BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040780
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana
GN=APC6 PE=2 SV=1
Length = 543
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/95 (94%), Positives = 94/95 (98%)
Query: 1 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDP+D+YMQAQALFLGRHYRRAFH
Sbjct: 1 MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60
Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16
PE=2 SV=1
Length = 620
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64
+E LR VR + + Y SA+F+ADKVA+L++ +P DVY AQ L+L Y RA H L +
Sbjct: 3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62
Query: 65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
K+ RYLAA+C KE +Q L +L
Sbjct: 63 RKLDKLYEACRYLAARCHYAAKEHQQALDIL 93
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16
PE=1 SV=2
Length = 620
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNA 64
+E+LR VR + + Y SA+F+ADKVA+L+ +P D+Y AQ L+L Y RA H L +
Sbjct: 3 LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62
Query: 65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
K+ RYLAA+C KE +Q L +L
Sbjct: 63 RKLDKLYEACRYLAARCHYAAKEHQQALDVL 93
>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1
SV=1
Length = 840
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS 65
IE+LR D + +H+Y +A + ADKV ++NDP D + Q + Y RA L+ +
Sbjct: 230 IERLRLWRFDALMQHMYRTAEYIADKVYNISNDPDDAFWLGQVYYNNNQYVRAVELITRN 289
Query: 66 KIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
+ ++ RYL +L+ ++ L ++
Sbjct: 290 NLDGVNILCRYLLGLSFVKLQRFDDALDVI 319
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
Length = 671
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 15 DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRF 74
D + + Y A F +KV +T +P D + AQ Y RA LL + R
Sbjct: 93 DALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSAC 152
Query: 75 RYLAAKCLEELKEWEQCLSML 95
RYLAA CL +L +W+ L++L
Sbjct: 153 RYLAAFCLVKLYDWQGALNLL 173
>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum
GN=anapc6 PE=3 SV=1
Length = 865
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 48/137 (35%)
Query: 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPAD-----VYMQAQALFLGRHYRRAFHL 61
++L+ + + +S H Y +AIFF+DK+ L + +Y+ AL+L R ++R+ +L
Sbjct: 13 KQLKEKIENALSIHSYPTAIFFSDKLLNLVTIHSKEYVKILYILCDALYLDRQFQRSSYL 72
Query: 62 ----LNASKIVLRD---------------------------------------LRFRYLA 78
LNA + + + L+ +YLA
Sbjct: 73 IQKYLNAIEEIDKKGEDYQYIDDIHSHHHNQQQNIFYKRIKKEKEDEQYTNTILKLKYLA 132
Query: 79 AKCLEELKEWEQCLSML 95
AKC E E++QCL +L
Sbjct: 133 AKCKIETNEFDQCLQIL 149
>sp|P10505|APC3_SCHPO Anaphase-promoting complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nuc2 PE=1 SV=3
Length = 665
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS 65
++L+ ++ C+ Y ++IF+++++ A+ + +Y+ A + FL Y + LL+
Sbjct: 2 TDRLKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLDR- 60
Query: 66 KIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
V+ + YL A+ L ++Q +S +
Sbjct: 61 --VISHVPCTYLFARTSLILGRYKQGISAV 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,045,932
Number of Sequences: 539616
Number of extensions: 988550
Number of successful extensions: 2862
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2849
Number of HSP's gapped (non-prelim): 13
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)