Query 040780
Match_columns 95
No_of_seqs 104 out of 271
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1173 Anaphase-promoting com 99.8 6.5E-21 1.4E-25 150.3 8.2 90 6-95 16-105 (611)
2 PF12895 Apc3: Anaphase-promot 99.7 4.2E-18 9.1E-23 104.1 5.8 78 18-95 1-81 (84)
3 TIGR02552 LcrH_SycD type III s 98.6 5.4E-07 1.2E-11 58.0 8.8 89 6-94 17-107 (135)
4 PRK15359 type III secretion sy 98.2 1.6E-05 3.6E-10 53.0 8.8 86 9-94 27-114 (144)
5 PF04049 APC8: Anaphase promot 98.2 1.4E-05 3.1E-10 54.0 8.4 78 3-84 7-115 (142)
6 PLN03088 SGT1, suppressor of 98.2 1.2E-05 2.6E-10 61.0 8.8 87 8-94 4-92 (356)
7 PF14559 TPR_19: Tetratricopep 98.1 2.6E-05 5.5E-10 44.8 6.7 50 17-66 2-52 (68)
8 cd00189 TPR Tetratricopeptide 98.1 4.6E-05 9.9E-10 43.2 7.5 85 10-94 4-90 (100)
9 PRK10370 formate-dependent nit 98.0 9E-05 2E-09 52.0 10.1 81 14-94 81-166 (198)
10 TIGR02521 type_IV_pilW type IV 98.0 0.00014 2.9E-09 48.7 9.6 87 7-93 32-120 (234)
11 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00016 3.4E-09 44.7 9.0 87 8-94 4-98 (119)
12 PRK15363 pathogenicity island 97.9 0.00016 3.4E-09 49.9 9.2 92 3-94 32-125 (157)
13 TIGR02917 PEP_TPR_lipo putativ 97.8 0.00025 5.5E-09 56.1 9.9 88 7-94 23-112 (899)
14 PRK15179 Vi polysaccharide bio 97.7 0.00033 7E-09 57.8 9.3 79 16-94 96-176 (694)
15 PRK10803 tol-pal system protei 97.7 0.00095 2.1E-08 49.1 10.4 86 9-94 146-239 (263)
16 PF13371 TPR_9: Tetratricopept 97.7 0.00019 4.1E-09 41.7 5.4 51 15-65 4-55 (73)
17 PRK02603 photosystem I assembl 97.6 0.0013 2.9E-08 44.5 9.8 82 6-87 35-121 (172)
18 TIGR00990 3a0801s09 mitochondr 97.6 0.0011 2.3E-08 53.2 10.5 88 6-93 127-215 (615)
19 PRK12370 invasion protein regu 97.6 0.00038 8.2E-09 55.4 7.9 75 18-92 350-426 (553)
20 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.5E-09 41.3 4.3 51 14-64 5-56 (65)
21 TIGR03302 OM_YfiO outer membra 97.5 0.00083 1.8E-08 47.0 8.0 89 6-94 33-137 (235)
22 PRK15331 chaperone protein Sic 97.5 0.00096 2.1E-08 46.4 7.9 92 3-94 34-127 (165)
23 TIGR00990 3a0801s09 mitochondr 97.5 0.0014 3E-08 52.5 9.7 14 78-91 473-486 (615)
24 TIGR02917 PEP_TPR_lipo putativ 97.4 0.0017 3.8E-08 51.4 9.9 86 9-95 807-894 (899)
25 TIGR02521 type_IV_pilW type IV 97.4 0.0033 7.1E-08 41.9 9.7 81 13-93 142-224 (234)
26 PF13432 TPR_16: Tetratricopep 97.4 0.00063 1.4E-08 38.8 5.2 52 43-94 1-53 (65)
27 cd05804 StaR_like StaR_like; a 97.4 0.0028 6E-08 46.6 9.6 82 13-94 121-208 (355)
28 PF09976 TPR_21: Tetratricopep 97.3 0.0042 9.2E-08 40.9 9.5 84 12-95 17-108 (145)
29 PRK12370 invasion protein regu 97.3 0.00086 1.9E-08 53.4 6.9 75 20-94 318-394 (553)
30 PF13414 TPR_11: TPR repeat; P 97.3 0.00054 1.2E-08 39.4 4.2 56 9-64 6-63 (69)
31 TIGR02552 LcrH_SycD type III s 97.3 0.0007 1.5E-08 43.3 5.0 65 30-94 7-73 (135)
32 CHL00033 ycf3 photosystem I as 97.3 0.0086 1.9E-07 40.2 10.6 88 6-93 35-134 (168)
33 PF09976 TPR_21: Tetratricopep 97.3 0.0097 2.1E-07 39.2 10.4 83 12-94 54-140 (145)
34 PF13414 TPR_11: TPR repeat; P 97.2 0.0011 2.4E-08 38.0 5.1 57 38-94 2-60 (69)
35 PF14559 TPR_19: Tetratricopep 97.2 0.00042 9.1E-09 39.6 3.2 47 49-95 1-48 (68)
36 COG1729 Uncharacterized protei 97.2 0.0057 1.2E-07 45.3 9.8 87 9-95 144-238 (262)
37 PF13371 TPR_9: Tetratricopept 97.2 0.00062 1.3E-08 39.5 3.8 51 45-95 1-52 (73)
38 PRK15174 Vi polysaccharide exp 97.2 0.0038 8.3E-08 50.8 9.5 77 17-93 257-339 (656)
39 KOG1126 DNA-binding cell divis 97.2 0.0008 1.7E-08 54.9 5.4 80 16-95 499-580 (638)
40 PRK15174 Vi polysaccharide exp 97.2 0.0025 5.4E-08 51.9 8.3 86 8-93 44-131 (656)
41 PRK11788 tetratricopeptide rep 97.1 0.0062 1.3E-07 45.2 9.4 79 15-93 189-270 (389)
42 PF12895 Apc3: Anaphase-promot 97.1 0.0015 3.2E-08 39.2 4.8 55 9-64 28-83 (84)
43 PRK11788 tetratricopeptide rep 97.1 0.0084 1.8E-07 44.5 9.8 86 9-94 144-236 (389)
44 KOG2376 Signal recognition par 97.1 0.0035 7.5E-08 51.1 7.9 59 7-65 13-72 (652)
45 PRK15359 type III secretion sy 97.1 0.0075 1.6E-07 40.1 8.4 76 11-86 63-140 (144)
46 PRK11189 lipoprotein NlpI; Pro 97.0 0.0048 1E-07 45.5 8.1 76 18-93 76-153 (296)
47 PRK15179 Vi polysaccharide bio 97.0 0.0061 1.3E-07 50.5 9.1 82 13-94 127-210 (694)
48 PRK11447 cellulose synthase su 96.9 0.0082 1.8E-07 51.7 9.5 85 10-94 465-551 (1157)
49 PF12688 TPR_5: Tetratrico pep 96.8 0.01 2.2E-07 39.0 7.4 80 16-95 11-98 (120)
50 PRK09782 bacteriophage N4 rece 96.7 0.014 3.1E-07 50.0 9.5 81 14-94 617-699 (987)
51 PF13429 TPR_15: Tetratricopep 96.7 0.0044 9.6E-08 44.6 5.7 80 14-93 154-235 (280)
52 PLN03088 SGT1, suppressor of 96.7 0.014 3E-07 44.4 8.5 80 9-88 39-120 (356)
53 KOG2376 Signal recognition par 96.7 0.0081 1.8E-07 49.0 7.3 86 7-94 47-132 (652)
54 PRK10049 pgaA outer membrane p 96.7 0.022 4.7E-07 47.2 10.0 85 10-94 363-449 (765)
55 PF03704 BTAD: Bacterial trans 96.7 0.013 2.8E-07 38.3 7.1 62 3-64 59-121 (146)
56 PF13429 TPR_15: Tetratricopep 96.7 0.0062 1.3E-07 43.9 6.0 88 7-94 181-270 (280)
57 PRK11189 lipoprotein NlpI; Pro 96.6 0.023 5.1E-07 41.8 9.0 83 11-94 103-187 (296)
58 TIGR02795 tol_pal_ybgF tol-pal 96.6 0.006 1.3E-07 37.5 4.8 56 39-94 2-61 (119)
59 PRK09782 bacteriophage N4 rece 96.5 0.028 6.1E-07 48.3 10.0 76 19-94 589-665 (987)
60 PRK10049 pgaA outer membrane p 96.5 0.022 4.8E-07 47.1 9.1 84 9-93 52-137 (765)
61 PF09295 ChAPs: ChAPs (Chs5p-A 96.4 0.027 5.9E-07 43.9 8.5 49 46-94 241-290 (395)
62 PF13424 TPR_12: Tetratricopep 96.4 0.0059 1.3E-07 35.8 3.8 54 41-94 7-68 (78)
63 PF12569 NARP1: NMDA receptor- 96.4 0.024 5.1E-07 45.6 8.3 81 12-94 200-284 (517)
64 PRK10866 outer membrane biogen 96.4 0.045 9.8E-07 39.6 9.0 80 7-86 33-120 (243)
65 PRK10747 putative protoheme IX 96.4 0.05 1.1E-06 41.7 9.6 83 13-95 125-210 (398)
66 PRK11447 cellulose synthase su 96.3 0.049 1.1E-06 47.0 10.0 83 12-94 609-693 (1157)
67 PF13525 YfiO: Outer membrane 96.2 0.058 1.3E-06 37.7 8.3 81 5-85 4-92 (203)
68 cd00189 TPR Tetratricopeptide 96.1 0.017 3.7E-07 32.2 4.5 54 41-94 2-56 (100)
69 PRK10747 putative protoheme IX 96.0 0.043 9.2E-07 42.0 7.4 83 13-95 160-286 (398)
70 COG4783 Putative Zn-dependent 95.9 0.094 2E-06 41.9 9.1 82 12-93 346-429 (484)
71 PF13512 TPR_18: Tetratricopep 95.8 0.098 2.1E-06 35.5 7.9 82 6-87 10-99 (142)
72 TIGR03302 OM_YfiO outer membra 95.6 0.095 2.1E-06 36.5 7.6 83 12-94 76-188 (235)
73 PF09295 ChAPs: ChAPs (Chs5p-A 95.6 0.14 2.9E-06 40.0 8.9 78 15-94 178-256 (395)
74 TIGR02561 HrpB1_HrpK type III 95.5 0.42 9E-06 32.9 10.1 85 3-87 7-93 (153)
75 KOG0551 Hsp90 co-chaperone CNS 95.4 0.13 2.8E-06 39.9 8.1 91 4-94 79-175 (390)
76 PF12569 NARP1: NMDA receptor- 95.4 0.059 1.3E-06 43.3 6.6 54 41-94 196-250 (517)
77 TIGR00540 hemY_coli hemY prote 95.4 0.12 2.7E-06 39.5 8.0 79 16-94 128-209 (409)
78 PRK10370 formate-dependent nit 95.2 0.11 2.5E-06 36.3 6.9 76 19-94 52-132 (198)
79 PF13525 YfiO: Outer membrane 95.2 0.074 1.6E-06 37.1 5.8 57 38-94 4-64 (203)
80 COG2956 Predicted N-acetylgluc 95.1 0.16 3.4E-06 39.3 7.7 76 18-93 153-235 (389)
81 KOG2076 RNA polymerase III tra 95.1 0.2 4.4E-06 42.6 9.0 93 3-95 411-506 (895)
82 PF13431 TPR_17: Tetratricopep 95.1 0.037 8.1E-07 28.3 3.0 30 30-59 3-33 (34)
83 PF13424 TPR_12: Tetratricopep 95.0 0.26 5.7E-06 28.6 7.1 59 6-64 5-71 (78)
84 COG4105 ComL DNA uptake lipopr 95.0 0.13 2.8E-06 38.1 6.7 81 4-84 32-120 (254)
85 KOG1156 N-terminal acetyltrans 94.9 0.099 2.2E-06 43.2 6.5 81 13-93 14-96 (700)
86 KOG0553 TPR repeat-containing 94.9 0.37 8.1E-06 36.5 9.0 90 5-94 80-171 (304)
87 KOG4340 Uncharacterized conser 94.8 0.098 2.1E-06 40.4 5.9 86 10-95 14-101 (459)
88 KOG2053 Mitochondrial inherita 94.7 0.24 5.1E-06 42.3 8.4 90 4-93 7-98 (932)
89 COG2956 Predicted N-acetylgluc 94.7 0.37 8E-06 37.3 8.8 91 3-95 177-272 (389)
90 KOG1126 DNA-binding cell divis 94.7 0.14 3E-06 42.2 6.7 77 17-93 534-612 (638)
91 COG4783 Putative Zn-dependent 94.5 0.35 7.7E-06 38.7 8.5 83 13-95 313-397 (484)
92 PRK14574 hmsH outer membrane p 94.5 0.43 9.3E-06 40.5 9.4 88 7-94 417-506 (822)
93 PRK02603 photosystem I assembl 94.4 0.16 3.5E-06 34.2 5.8 69 26-94 16-94 (172)
94 PRK14574 hmsH outer membrane p 94.4 0.29 6.3E-06 41.5 8.3 82 11-94 73-158 (822)
95 PRK14720 transcript cleavage f 94.3 0.42 9.1E-06 41.0 9.0 89 5-94 30-138 (906)
96 PF13428 TPR_14: Tetratricopep 94.1 0.1 2.2E-06 27.7 3.5 25 40-64 2-26 (44)
97 PF09613 HrpB1_HrpK: Bacterial 94.1 1.3 2.8E-05 30.7 10.1 85 3-87 7-93 (160)
98 TIGR00540 hemY_coli hemY prote 93.8 0.44 9.5E-06 36.5 7.7 74 19-93 312-391 (409)
99 PF07719 TPR_2: Tetratricopept 93.8 0.11 2.3E-06 25.4 3.0 25 40-64 2-26 (34)
100 cd05804 StaR_like StaR_like; a 93.4 0.33 7.1E-06 35.6 6.2 52 43-94 118-170 (355)
101 PRK15363 pathogenicity island 93.4 0.26 5.5E-06 34.0 5.3 49 16-64 79-128 (157)
102 COG1729 Uncharacterized protei 93.4 0.31 6.7E-06 36.2 6.0 53 42-94 144-200 (262)
103 KOG3785 Uncharacterized conser 93.0 0.41 8.9E-06 37.8 6.4 81 13-94 29-113 (557)
104 PRK11906 transcriptional regul 93.0 0.52 1.1E-05 37.6 7.0 72 23-94 321-394 (458)
105 KOG0624 dsRNA-activated protei 92.8 1.2 2.6E-05 35.1 8.6 85 8-92 157-243 (504)
106 PF13174 TPR_6: Tetratricopept 92.7 0.14 2.9E-06 24.8 2.3 25 40-64 1-25 (33)
107 KOG2003 TPR repeat-containing 92.6 0.76 1.6E-05 37.5 7.5 81 6-86 626-708 (840)
108 PLN03098 LPA1 LOW PSII ACCUMUL 92.6 0.34 7.3E-06 38.6 5.5 52 14-65 83-138 (453)
109 KOG1129 TPR repeat-containing 92.0 1.7 3.6E-05 34.2 8.5 81 12-93 229-311 (478)
110 PF13512 TPR_18: Tetratricopep 91.7 0.96 2.1E-05 30.7 6.2 58 37-94 8-69 (142)
111 KOG0547 Translocase of outer m 90.9 2.2 4.8E-05 34.8 8.4 87 6-93 115-204 (606)
112 COG4235 Cytochrome c biogenesi 90.8 2 4.3E-05 32.4 7.7 81 14-94 164-249 (287)
113 PRK10866 outer membrane biogen 90.7 0.97 2.1E-05 32.7 5.8 57 38-94 31-91 (243)
114 PF07079 DUF1347: Protein of u 90.7 1.4 3.1E-05 35.6 7.1 53 14-66 470-522 (549)
115 PF12688 TPR_5: Tetratrico pep 90.6 1 2.2E-05 29.5 5.4 57 39-95 1-61 (120)
116 PRK10803 tol-pal system protei 90.5 1.3 2.8E-05 32.6 6.4 51 14-64 188-242 (263)
117 KOG1127 TPR repeat-containing 90.2 0.52 1.1E-05 41.1 4.6 81 15-95 571-653 (1238)
118 KOG0543 FKBP-type peptidyl-pro 90.1 2.2 4.9E-05 33.5 7.7 54 12-65 263-317 (397)
119 KOG1174 Anaphase-promoting com 90.1 1.4 3E-05 35.5 6.5 74 19-92 313-388 (564)
120 KOG4642 Chaperone-dependent E3 90.1 0.75 1.6E-05 34.3 4.8 93 3-95 7-101 (284)
121 PLN03098 LPA1 LOW PSII ACCUMUL 89.9 1.2 2.5E-05 35.6 6.1 58 38-95 74-135 (453)
122 PF07719 TPR_2: Tetratricopept 89.9 1.3 2.9E-05 21.2 4.4 29 10-38 5-33 (34)
123 KOG4162 Predicted calmodulin-b 89.8 1.3 2.8E-05 37.5 6.5 75 20-94 458-535 (799)
124 PF13428 TPR_14: Tetratricopep 89.8 1.2 2.5E-05 23.5 4.4 39 9-47 4-43 (44)
125 PRK15331 chaperone protein Sic 89.6 0.71 1.5E-05 32.1 4.2 50 15-64 80-130 (165)
126 KOG1174 Anaphase-promoting com 89.4 1.1 2.4E-05 36.0 5.5 66 28-93 288-355 (564)
127 COG3118 Thioredoxin domain-con 88.8 6.6 0.00014 29.9 9.1 80 16-95 144-259 (304)
128 PF07720 TPR_3: Tetratricopept 88.8 0.76 1.6E-05 23.9 3.0 25 39-63 1-25 (36)
129 PF10255 Paf67: RNA polymerase 88.5 0.95 2.1E-05 35.6 4.7 55 41-95 124-187 (404)
130 KOG2002 TPR-containing nuclear 88.2 3.4 7.3E-05 35.9 7.9 76 17-92 247-327 (1018)
131 PF07721 TPR_4: Tetratricopept 88.1 1.2 2.7E-05 21.0 3.4 22 42-63 4-25 (26)
132 PLN03218 maturation of RBCL 1; 88.1 5.3 0.00012 35.0 9.3 85 9-94 687-776 (1060)
133 PF04910 Tcf25: Transcriptiona 88.0 5.1 0.00011 30.8 8.4 80 9-88 106-194 (360)
134 PLN03077 Protein ECB2; Provisi 88.0 6.8 0.00015 32.7 9.6 54 12-65 595-651 (857)
135 PF04733 Coatomer_E: Coatomer 88.0 3.6 7.8E-05 30.6 7.3 53 12-64 173-226 (290)
136 PF04733 Coatomer_E: Coatomer 87.8 5.7 0.00012 29.5 8.3 89 6-95 131-224 (290)
137 CHL00033 ycf3 photosystem I as 87.7 2.2 4.7E-05 28.4 5.5 52 13-64 79-138 (168)
138 PF14853 Fis1_TPR_C: Fis1 C-te 87.7 0.98 2.1E-05 25.5 3.2 25 40-64 2-26 (53)
139 COG3063 PilF Tfp pilus assembl 87.6 9.4 0.0002 28.3 9.1 60 4-63 33-93 (250)
140 PF07079 DUF1347: Protein of u 87.5 1.1 2.4E-05 36.1 4.5 82 10-95 425-518 (549)
141 smart00028 TPR Tetratricopepti 86.8 1.1 2.4E-05 19.7 2.7 25 40-64 2-26 (34)
142 KOG2610 Uncharacterized conser 86.7 2.7 6E-05 33.1 6.1 75 17-94 186-269 (491)
143 KOG0550 Molecular chaperone (D 86.6 4.8 0.00011 32.2 7.5 82 12-93 255-342 (486)
144 PF14863 Alkyl_sulf_dimr: Alky 86.5 2.3 4.9E-05 28.7 5.0 64 26-89 57-121 (141)
145 PRK10153 DNA-binding transcrip 86.2 2.5 5.4E-05 34.0 5.9 47 18-64 432-478 (517)
146 KOG3785 Uncharacterized conser 85.7 3.5 7.6E-05 32.8 6.3 48 41-88 430-477 (557)
147 KOG1840 Kinesin light chain [C 85.2 7.8 0.00017 31.4 8.2 88 6-93 199-304 (508)
148 PF00515 TPR_1: Tetratricopept 85.2 1.6 3.4E-05 21.2 3.0 24 41-64 3-26 (34)
149 KOG0547 Translocase of outer m 84.9 3 6.4E-05 34.1 5.7 75 17-93 405-483 (606)
150 PF15015 NYD-SP12_N: Spermatog 84.3 3.1 6.8E-05 33.5 5.5 78 15-93 192-283 (569)
151 PLN03081 pentatricopeptide (PP 84.2 12 0.00026 30.6 9.1 50 43-94 162-211 (697)
152 PF08631 SPO22: Meiosis protei 84.1 12 0.00026 27.3 8.4 91 4-94 33-143 (278)
153 PF03704 BTAD: Bacterial trans 84.0 9 0.00019 24.6 9.7 81 14-94 14-118 (146)
154 PLN03218 maturation of RBCL 1; 83.9 14 0.00031 32.4 9.8 83 10-93 618-705 (1060)
155 KOG4162 Predicted calmodulin-b 83.6 12 0.00025 32.0 8.8 91 3-93 302-415 (799)
156 PF13176 TPR_7: Tetratricopept 83.4 2.4 5.1E-05 21.4 3.2 23 42-64 2-24 (36)
157 PF09477 Type_III_YscG: Bacter 83.3 11 0.00023 24.9 10.2 87 3-93 3-90 (116)
158 PLN03081 pentatricopeptide (PP 83.1 5.7 0.00012 32.4 6.8 56 9-64 497-553 (697)
159 KOG0548 Molecular co-chaperone 83.0 12 0.00026 30.6 8.4 87 6-94 358-448 (539)
160 TIGR02508 type_III_yscG type I 82.4 11 0.00025 24.6 7.9 81 8-92 7-88 (115)
161 KOG0553 TPR repeat-containing 82.3 3.2 7E-05 31.5 4.7 50 16-65 125-175 (304)
162 KOG1585 Protein required for f 82.0 12 0.00027 28.2 7.6 41 3-43 88-130 (308)
163 PF14853 Fis1_TPR_C: Fis1 C-te 81.5 2.3 4.9E-05 24.0 2.9 21 73-93 2-22 (53)
164 PF13181 TPR_8: Tetratricopept 81.4 3.6 7.7E-05 19.8 3.4 24 41-64 3-26 (34)
165 PF13374 TPR_10: Tetratricopep 81.2 3.2 6.9E-05 20.6 3.2 24 41-64 4-27 (42)
166 COG5010 TadD Flp pilus assembl 80.9 21 0.00045 26.6 8.6 47 12-58 106-153 (257)
167 PLN03077 Protein ECB2; Provisi 80.7 20 0.00044 30.0 9.4 85 9-94 557-647 (857)
168 PF14561 TPR_20: Tetratricopep 80.4 3.7 8.1E-05 25.3 3.9 32 31-62 13-45 (90)
169 KOG0543 FKBP-type peptidyl-pro 80.3 3.3 7.2E-05 32.6 4.3 85 10-94 212-313 (397)
170 PF10300 DUF3808: Protein of u 79.7 5.5 0.00012 31.6 5.5 44 12-55 311-356 (468)
171 PF02151 UVR: UvrB/uvrC motif; 78.3 7.4 0.00016 20.0 4.5 33 3-35 1-33 (36)
172 KOG2076 RNA polymerase III tra 78.2 19 0.00042 31.2 8.4 54 11-64 454-508 (895)
173 PF11846 DUF3366: Domain of un 77.7 6.1 0.00013 27.1 4.7 46 20-65 125-170 (193)
174 KOG4340 Uncharacterized conser 77.6 6.3 0.00014 30.8 5.0 45 19-63 157-202 (459)
175 KOG3364 Membrane protein invol 77.0 14 0.0003 25.4 6.0 58 36-93 29-92 (149)
176 KOG1156 N-terminal acetyltrans 75.8 31 0.00068 29.1 8.8 89 4-94 369-461 (700)
177 COG4235 Cytochrome c biogenesi 75.8 17 0.00036 27.5 6.8 51 14-64 201-252 (287)
178 KOG1840 Kinesin light chain [C 75.6 21 0.00046 29.0 7.8 89 6-94 283-389 (508)
179 COG4105 ComL DNA uptake lipopr 75.6 11 0.00024 28.0 5.7 44 9-52 74-121 (254)
180 KOG2002 TPR-containing nuclear 75.4 19 0.0004 31.6 7.6 84 9-92 273-362 (1018)
181 COG5010 TadD Flp pilus assembl 75.2 29 0.00062 25.9 7.8 77 18-94 146-224 (257)
182 smart00668 CTLH C-terminal to 74.7 4.8 0.0001 21.9 2.9 28 9-36 4-31 (58)
183 COG4700 Uncharacterized protei 74.3 31 0.00068 25.2 7.9 80 15-94 98-182 (251)
184 PRK10153 DNA-binding transcrip 74.2 22 0.00049 28.6 7.6 72 23-94 401-475 (517)
185 PF04184 ST7: ST7 protein; In 74.2 8 0.00017 31.6 5.0 52 43-95 263-318 (539)
186 PRK04841 transcriptional regul 73.7 21 0.00045 29.7 7.5 79 16-94 462-553 (903)
187 KOG0376 Serine-threonine phosp 73.1 3.8 8.3E-05 32.9 3.0 86 9-94 7-94 (476)
188 KOG1155 Anaphase-promoting com 73.1 5.5 0.00012 32.4 3.8 42 41-86 80-121 (559)
189 PRK10941 hypothetical protein; 72.9 22 0.00047 26.4 6.8 56 9-64 184-240 (269)
190 PF14938 SNAP: Soluble NSF att 72.9 33 0.00072 24.9 8.7 74 21-94 89-177 (282)
191 PF04840 Vps16_C: Vps16, C-ter 72.5 39 0.00085 25.5 9.2 77 9-93 180-258 (319)
192 PRK11906 transcriptional regul 71.9 24 0.00051 28.4 7.1 46 19-64 351-397 (458)
193 KOG1155 Anaphase-promoting com 71.2 36 0.00079 27.9 8.0 73 20-92 412-486 (559)
194 KOG2300 Uncharacterized conser 70.6 29 0.00062 28.7 7.3 80 15-94 376-467 (629)
195 KOG3081 Vesicle coat complex C 70.3 37 0.00081 25.8 7.5 82 13-95 144-230 (299)
196 PRK14720 transcript cleavage f 70.0 26 0.00055 30.6 7.3 74 19-93 96-170 (906)
197 PF14863 Alkyl_sulf_dimr: Alky 69.8 13 0.00029 24.9 4.7 48 6-53 70-118 (141)
198 PRK04841 transcriptional regul 68.5 48 0.001 27.6 8.5 79 15-94 500-595 (903)
199 KOG3081 Vesicle coat complex C 67.7 20 0.00043 27.2 5.6 53 38-94 105-159 (299)
200 PF10300 DUF3808: Protein of u 67.0 21 0.00046 28.3 6.0 72 17-88 278-356 (468)
201 PF10345 Cohesin_load: Cohesin 65.4 73 0.0016 25.9 9.0 91 3-94 57-161 (608)
202 KOG1125 TPR repeat-containing 62.8 14 0.0003 30.5 4.2 49 46-94 471-520 (579)
203 KOG1129 TPR repeat-containing 62.6 20 0.00043 28.3 4.9 56 39-94 220-278 (478)
204 COG3071 HemY Uncharacterized e 61.2 62 0.0013 25.7 7.4 67 27-93 315-382 (400)
205 PF04781 DUF627: Protein of un 60.8 35 0.00076 22.3 5.2 41 13-56 3-43 (111)
206 PLN02789 farnesyltranstransfer 60.7 70 0.0015 24.1 8.4 57 5-64 39-97 (320)
207 PF04049 APC8: Anaphase promot 60.1 5.9 0.00013 26.6 1.5 23 73-95 75-97 (142)
208 KOG0624 dsRNA-activated protei 59.2 44 0.00095 26.7 6.2 83 11-93 43-127 (504)
209 COG3063 PilF Tfp pilus assembl 58.1 38 0.00083 25.1 5.5 57 8-64 141-198 (250)
210 KOG3364 Membrane protein invol 57.3 14 0.0003 25.3 2.9 43 22-64 51-96 (149)
211 KOG0495 HAT repeat protein [RN 56.6 87 0.0019 27.0 7.8 76 20-95 598-674 (913)
212 PF08513 LisH: LisH; InterPro 56.4 22 0.00048 17.0 3.0 21 7-27 1-21 (27)
213 PF06957 COPI_C: Coatomer (COP 55.8 8.3 0.00018 30.6 1.9 35 6-40 300-334 (422)
214 PF02259 FAT: FAT domain; Int 55.4 77 0.0017 22.9 7.8 62 3-64 143-209 (352)
215 COG2976 Uncharacterized protei 55.2 78 0.0017 22.9 8.0 72 24-95 70-149 (207)
216 KOG0775 Transcription factor S 54.8 28 0.00061 26.4 4.4 26 43-68 103-128 (304)
217 PF12862 Apc5: Anaphase-promot 54.7 46 0.001 20.1 5.2 50 15-64 7-66 (94)
218 TIGR03824 FlgM_jcvi flagellar 53.8 23 0.0005 21.9 3.4 23 13-35 71-94 (95)
219 PF11817 Foie-gras_1: Foie gra 53.2 53 0.0012 23.5 5.6 52 42-93 181-239 (247)
220 KOG0548 Molecular co-chaperone 53.2 43 0.00094 27.5 5.5 78 14-93 10-91 (539)
221 PF10037 MRP-S27: Mitochondria 53.0 46 0.001 26.5 5.6 54 10-63 107-162 (429)
222 PF13934 ELYS: Nuclear pore co 52.0 85 0.0019 22.4 7.4 74 15-92 87-160 (226)
223 KOG1173 Anaphase-promoting com 51.9 82 0.0018 26.3 6.9 71 12-82 461-533 (611)
224 KOG3060 Uncharacterized conser 51.5 90 0.002 23.7 6.6 45 10-54 158-203 (289)
225 COG3923 PriC Primosomal replic 50.5 28 0.0006 24.4 3.6 27 5-35 56-82 (175)
226 PF10607 CLTH: CTLH/CRA C-term 49.5 68 0.0015 20.6 5.4 57 9-65 4-66 (145)
227 PF07035 Mic1: Colon cancer-as 49.1 87 0.0019 21.7 7.1 50 16-65 51-115 (167)
228 COG3118 Thioredoxin domain-con 47.2 49 0.0011 25.3 4.7 58 38-95 133-191 (304)
229 COG2912 Uncharacterized conser 47.1 1.2E+02 0.0026 22.7 6.8 62 4-65 178-241 (269)
230 KOG4626 O-linked N-acetylgluco 46.3 86 0.0019 27.0 6.3 48 18-65 332-380 (966)
231 PF04053 Coatomer_WDAD: Coatom 46.1 1.5E+02 0.0033 23.5 8.0 71 7-81 348-440 (443)
232 PF12854 PPR_1: PPR repeat 46.0 38 0.00083 16.7 3.5 22 43-64 11-32 (34)
233 COG3629 DnrI DNA-binding trans 45.6 1.3E+02 0.0028 22.6 7.4 62 3-64 150-212 (280)
234 KOG1550 Extracellular protein 45.3 97 0.0021 25.1 6.5 61 21-83 308-371 (552)
235 KOG2003 TPR repeat-containing 45.1 22 0.00047 29.4 2.7 73 21-93 471-545 (840)
236 PRK15180 Vi polysaccharide bio 45.0 56 0.0012 27.3 5.0 54 37-93 321-378 (831)
237 COG1116 TauB ABC-type nitrate/ 44.7 6.7 0.00015 29.0 -0.2 22 18-39 187-208 (248)
238 COG3898 Uncharacterized membra 44.4 1.7E+02 0.0037 23.8 9.5 60 5-64 153-213 (531)
239 PLN02789 farnesyltranstransfer 43.4 93 0.002 23.5 5.8 42 23-64 125-167 (320)
240 COG3947 Response regulator con 43.0 66 0.0014 25.0 4.9 84 4-87 242-328 (361)
241 PF02259 FAT: FAT domain; Int 42.6 55 0.0012 23.7 4.4 55 41-95 148-207 (352)
242 COG3071 HemY Uncharacterized e 42.1 1.4E+02 0.0031 23.7 6.7 55 9-63 156-211 (400)
243 PF14938 SNAP: Soluble NSF att 41.5 1.3E+02 0.0029 21.7 7.3 90 4-93 33-136 (282)
244 COG0457 NrfG FOG: TPR repeat [ 41.4 82 0.0018 19.2 8.1 84 10-93 63-151 (291)
245 PF08631 SPO22: Meiosis protei 41.2 1.1E+02 0.0024 22.2 5.8 75 16-90 3-102 (278)
246 COG3947 Response regulator con 39.5 98 0.0021 24.0 5.3 50 9-58 282-332 (361)
247 PF09613 HrpB1_HrpK: Bacterial 39.3 99 0.0021 21.4 4.9 53 13-65 51-107 (160)
248 PRK10093 primosomal replicatio 39.1 55 0.0012 22.9 3.7 21 16-36 59-79 (171)
249 TIGR00756 PPR pentatricopeptid 37.7 45 0.00097 15.2 2.3 20 45-64 6-25 (35)
250 KOG0292 Vesicle coat complex C 36.4 73 0.0016 28.3 4.6 40 5-44 1083-1122(1202)
251 TIGR03504 FimV_Cterm FimV C-te 36.0 64 0.0014 17.3 2.9 22 43-64 3-24 (44)
252 PF09986 DUF2225: Uncharacteri 36.0 90 0.002 22.2 4.5 47 18-64 137-190 (214)
253 PF01535 PPR: PPR repeat; Int 35.8 44 0.00095 15.0 2.1 20 45-64 6-25 (31)
254 PF09986 DUF2225: Uncharacteri 35.0 51 0.0011 23.4 3.1 24 71-94 164-187 (214)
255 KOG4626 O-linked N-acetylgluco 34.4 2.1E+02 0.0045 24.8 6.8 75 18-92 298-374 (966)
256 COG4525 TauB ABC-type taurine 34.3 15 0.00032 27.1 0.2 21 18-38 189-209 (259)
257 PF13812 PPR_3: Pentatricopept 32.5 59 0.0013 15.0 2.9 20 45-64 7-26 (34)
258 TIGR02561 HrpB1_HrpK type III 31.6 1.4E+02 0.0029 20.6 4.6 52 13-64 51-106 (153)
259 PF07219 HemY_N: HemY protein 31.6 1.3E+02 0.0029 18.7 4.5 47 41-87 61-108 (108)
260 PF13041 PPR_2: PPR repeat fam 31.4 84 0.0018 16.3 3.4 21 44-64 8-28 (50)
261 KOG1920 IkappaB kinase complex 31.2 2E+02 0.0043 26.3 6.4 24 43-66 1003-1026(1265)
262 PF04910 Tcf25: Transcriptiona 31.1 2.4E+02 0.0053 21.6 7.9 54 8-65 12-66 (360)
263 KOG1538 Uncharacterized conser 30.7 73 0.0016 27.5 3.7 58 7-64 774-842 (1081)
264 KOG1125 TPR repeat-containing 30.5 2E+02 0.0044 24.0 6.1 78 16-93 295-374 (579)
265 COG4455 ImpE Protein of avirul 30.2 2.4E+02 0.0051 21.2 6.4 56 9-64 4-60 (273)
266 smart00671 SEL1 Sel1-like repe 29.9 70 0.0015 15.0 3.4 25 40-64 2-30 (36)
267 KOG1128 Uncharacterized conser 29.9 62 0.0013 27.7 3.2 50 45-94 491-541 (777)
268 KOG4121 Nuclear pore complex, 29.2 3.6E+02 0.0078 24.4 7.6 53 6-62 772-824 (1128)
269 PRK04778 septation ring format 28.9 1.4E+02 0.0031 24.2 5.1 40 25-64 505-544 (569)
270 COG5600 Transcription-associat 28.2 1.2E+02 0.0026 24.2 4.3 50 43-92 181-240 (413)
271 smart00777 Mad3_BUB1_I Mad3/BU 27.6 1.7E+02 0.0037 19.2 4.4 43 52-94 79-121 (125)
272 PF07445 priB_priC: Primosomal 27.5 89 0.0019 21.6 3.2 28 5-36 52-79 (173)
273 KOG3616 Selective LIM binding 27.2 1.2E+02 0.0027 26.8 4.5 54 11-67 1297-1353(1636)
274 KOG1941 Acetylcholine receptor 26.6 1.5E+02 0.0033 23.9 4.6 67 21-87 177-261 (518)
275 KOG1550 Extracellular protein 26.3 2.1E+02 0.0046 23.1 5.6 66 20-86 263-339 (552)
276 COG4700 Uncharacterized protei 26.2 2.7E+02 0.0058 20.5 8.2 79 14-92 132-213 (251)
277 PF13034 DUF3895: Protein of u 26.0 1.1E+02 0.0024 18.7 3.1 36 9-44 5-40 (78)
278 PF15310 VAD1-2: Vitamin A-def 24.7 19 0.00042 26.4 -0.6 14 23-36 17-30 (245)
279 PF04348 LppC: LppC putative l 24.5 25 0.00054 28.5 0.0 53 12-64 30-86 (536)
280 PF12793 SgrR_N: Sugar transpo 23.9 1.4E+02 0.003 19.2 3.5 25 6-30 70-94 (115)
281 KOG1130 Predicted G-alpha GTPa 23.8 1.3E+02 0.0029 24.6 3.9 51 15-65 244-301 (639)
282 cd00103 IRF Interferon Regulat 23.6 17 0.00037 23.3 -0.9 24 8-32 3-26 (107)
283 KOG3616 Selective LIM binding 23.5 2.9E+02 0.0063 24.7 6.0 57 10-66 736-792 (1636)
284 PF04190 DUF410: Protein of un 23.4 3E+02 0.0064 20.0 11.2 91 3-93 7-111 (260)
285 KOG4814 Uncharacterized conser 23.3 2.6E+02 0.0056 24.2 5.6 78 17-94 365-450 (872)
286 KOG1310 WD40 repeat protein [G 23.2 3E+02 0.0065 23.4 5.8 27 67-93 440-466 (758)
287 PF09797 NatB_MDM20: N-acetylt 23.2 2E+02 0.0043 21.7 4.7 44 21-64 198-242 (365)
288 KOG0889 Histone acetyltransfer 22.9 4.8E+02 0.01 26.8 7.7 90 4-93 2734-2833(3550)
289 COG2250 Uncharacterized conser 22.9 2.2E+02 0.0047 18.6 4.3 26 11-36 18-43 (132)
290 PF08311 Mad3_BUB1_I: Mad3/BUB 22.8 1.5E+02 0.0032 19.2 3.5 42 53-94 80-121 (126)
291 COG1476 Predicted transcriptio 22.6 1.1E+02 0.0023 18.2 2.5 32 15-46 32-64 (68)
292 TIGR02606 antidote_CC2985 puta 21.6 97 0.0021 18.1 2.2 24 7-30 8-31 (69)
293 KOG2471 TPR repeat-containing 21.2 1.3E+02 0.0029 25.1 3.5 30 37-66 238-267 (696)
294 PF13281 DUF4071: Domain of un 20.9 4.2E+02 0.0091 20.8 8.2 75 10-84 145-229 (374)
295 KOG2005 26S proteasome regulat 20.7 4.8E+02 0.01 22.7 6.6 67 17-83 214-296 (878)
296 PF12921 ATP13: Mitochondrial 20.5 1.7E+02 0.0036 19.0 3.3 27 38-64 51-77 (126)
No 1
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.5e-21 Score=150.25 Aligned_cols=90 Identities=58% Similarity=0.963 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l 85 (95)
+++.|++|++++++++|++|+|||||+..++++|.|+||+|||||..|+|+||.++++.+++...++.|+||+++|++++
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 67788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcC
Q 040780 86 KEWEQCLSML 95 (95)
Q Consensus 86 ~~~~eal~~L 95 (95)
++|++|+.+|
T Consensus 96 k~~~~al~vl 105 (611)
T KOG1173|consen 96 KEWDQALLVL 105 (611)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 2
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.74 E-value=4.2e-18 Score=104.14 Aligned_cols=78 Identities=29% Similarity=0.517 Sum_probs=67.3
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHH--HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQ--AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~ll--A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++++|++|+++.||++..+| ++++.+++ |.|+|..|+|++|+.++++.+...+++.+.|+.|+|++++|+|+||+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57999999999999999998 44665555 9999999999999999988556667889999999999999999999986
Q ss_pred C
Q 040780 95 L 95 (95)
Q Consensus 95 L 95 (95)
|
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=5.4e-07 Score=57.98 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
...+......++..++++.|+.+.+++...+| +++..+.+|.|++..|++..|...+++. ...+.++...|..|.|+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44566778889999999999999999999886 7788889999999999999999877764 345667888999999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
..|++++|+..
T Consensus 97 ~~g~~~~A~~~ 107 (135)
T TIGR02552 97 ALGEPESALKA 107 (135)
T ss_pred HcCCHHHHHHH
Confidence 99999999764
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=1.6e-05 Score=52.98 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
....-......+.|+.|+-..++++..+| +++..+.+|.++...|++..|+...++. .+.+.++...+-.|.|+..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 33455677889999999999999999997 7778889999999999999999988764 345678888899999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
+++||+..
T Consensus 107 ~~~eAi~~ 114 (144)
T PRK15359 107 EPGLAREA 114 (144)
T ss_pred CHHHHHHH
Confidence 99999875
No 5
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=98.21 E-value=1.4e-05 Score=53.99 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-------------------------------CchhHHHHHHHHhh
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-------------------------------DPADVYMQAQALFL 51 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-------------------------------~~~~~~llA~~l~~ 51 (95)
.+.-..||..|.++-+.+.|.+|-..||-+..+.+ ...+.|++|.+||-
T Consensus 7 ~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD 86 (142)
T PF04049_consen 7 KEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFD 86 (142)
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhc
Confidence 35667899999999999999999999999999981 01389999999999
Q ss_pred CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780 52 GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 52 ~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~ 84 (95)
.++|.||.+++++. +++.+.||.-.+.+-
T Consensus 87 ~kEy~RaA~~L~~~----~s~~~~FL~lYs~YL 115 (142)
T PF04049_consen 87 CKEYDRAAHVLKDC----KSPKALFLRLYSRYL 115 (142)
T ss_pred hhHHHHHHHHHccC----CCchHHHHHHHHHHH
Confidence 99999999999984 466666666666553
No 6
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=1.2e-05 Score=61.03 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
.|...-......+.|+.|+-..++++.++| ++...+.+|.|+...|++..|+..+++. .+...+....+..|.+++.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 466667788889999999999999999997 5667778899999999999999988764 34456778888999999999
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|+|++|+..
T Consensus 84 g~~~eA~~~ 92 (356)
T PLN03088 84 EEYQTAKAA 92 (356)
T ss_pred CCHHHHHHH
Confidence 999999875
No 7
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.08 E-value=2.6e-05 Score=44.84 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=44.9
Q ss_pred HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780 17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK 66 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~ 66 (95)
+.+++|+.|+-.-++++..+| +++..+.+|.|++..|++..|..++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999999999997 77788889999999999999999999853
No 8
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=4.6e-05 Score=43.17 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
..........++++.|+-+.+++....+ ++...+.+|.++...|++..|...++.. ...+.+....+..|.++...++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3455566778999999999999999886 4567788999999999999999988763 2234455677888999999999
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
+++|...
T Consensus 84 ~~~a~~~ 90 (100)
T cd00189 84 YEEALEA 90 (100)
T ss_pred HHHHHHH
Confidence 9998754
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.04 E-value=9e-05 Score=52.04 Aligned_cols=81 Identities=10% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHH-hhCCC--HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQAL-FLGRH--YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l-~~~~~--~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
.-++..+.+++|+-.-++++.+.| +++-.+.+|.++ +..|+ +..|..++++. ..++.++...++.|...++.|+|
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 357899999999999999999997 677777889996 67788 58999988764 34567889999999999999999
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
++|+..
T Consensus 161 ~~Ai~~ 166 (198)
T PRK10370 161 AQAIEL 166 (198)
T ss_pred HHHHHH
Confidence 999864
No 10
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.97 E-value=0.00014 Score=48.71 Aligned_cols=87 Identities=10% Similarity=-0.082 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
...-.+...+..+++|+.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.+....+..|.++..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 3344455666667777777777777666664 3445555667777777777766665542 1123344455555666666
Q ss_pred cccHHHHHh
Q 040780 85 LKEWEQCLS 93 (95)
Q Consensus 85 l~~~~eal~ 93 (95)
.|++++|+.
T Consensus 112 ~g~~~~A~~ 120 (234)
T TIGR02521 112 QGKYEQAMQ 120 (234)
T ss_pred cccHHHHHH
Confidence 666666654
No 11
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00016 Score=44.72 Aligned_cols=87 Identities=15% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc---ChhhHHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNASK-IVLR---DLRFRYLAA 79 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~---~~~c~yL~A 79 (95)
-+-......+.+++|+.|+=..+++....|+ ++..+.+|.+++..|+|..|...++..- ..+. .+...+..|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3456777888999999999999999988763 4578899999999999999999887531 1122 356789999
Q ss_pred HHHHHcccHHHHHhc
Q 040780 80 KCLEELKEWEQCLSM 94 (95)
Q Consensus 80 ~c~~~l~~~~eal~~ 94 (95)
.+..+++++++|+..
T Consensus 84 ~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 84 MSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHhCChHHHHHH
Confidence 999999999999864
No 12
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.92 E-value=0.00016 Score=49.92 Aligned_cols=92 Identities=9% Similarity=0.078 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAK 80 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~ 80 (95)
++.++.+-.+-......+.+++|+=+-+-++..+| +++..|-||-|+-+.|+|..|+..-.... +.+.++..-+=.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67788899999999999999999999999999997 78888999999999999999999877653 55678889999999
Q ss_pred HHHHcccHHHHHhc
Q 040780 81 CLEELKEWEQCLSM 94 (95)
Q Consensus 81 c~~~l~~~~eal~~ 94 (95)
|++++|+.++|...
T Consensus 112 c~L~lG~~~~A~~a 125 (157)
T PRK15363 112 CYLACDNVCYAIKA 125 (157)
T ss_pred HHHHcCCHHHHHHH
Confidence 99999999998764
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.80 E-value=0.00025 Score=56.05 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~ 84 (95)
+.+...-...+.+++|+.|+...++.....| +++..+.+|.+++..|+|..|...+++.. ....+....+..|+++..
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL 102 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHH
Confidence 3345556677888899999988888888886 67778888888888888888888776531 122344556677777777
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
.|++++|+..
T Consensus 103 ~g~~~~a~~~ 112 (899)
T TIGR02917 103 QGKFQQVLDE 112 (899)
T ss_pred CCCHHHHHHh
Confidence 7777777654
No 14
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.00033 Score=57.82 Aligned_cols=79 Identities=10% Similarity=-0.038 Sum_probs=65.1
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
-...|.|++|.+|=++++.+.| +......+|+++.+.+++.+|...+++. ...+.++...++.|.|+-++|+|+||+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 3457899999999999999997 5667888899999999999998888764 2235678888999999999999999886
Q ss_pred c
Q 040780 94 M 94 (95)
Q Consensus 94 ~ 94 (95)
+
T Consensus 176 ~ 176 (694)
T PRK15179 176 C 176 (694)
T ss_pred H
Confidence 4
No 15
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.65 E-value=0.00095 Score=49.12 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAK 80 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~ 80 (95)
+...+...+..+.|+.|+-.-++++...|+ ++..||+|.++|..|+|..|....++ ++-..+.+...|-.|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444454456679999999999999999873 57999999999999999999876643 4444566778888899
Q ss_pred HHHHcccHHHHHhc
Q 040780 81 CLEELKEWEQCLSM 94 (95)
Q Consensus 81 c~~~l~~~~eal~~ 94 (95)
+..++|++++|+..
T Consensus 226 ~~~~~g~~~~A~~~ 239 (263)
T PRK10803 226 IMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHcCCHHHHHHH
Confidence 99999999999875
No 16
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.65 E-value=0.00019 Score=41.69 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
-++.+++|+.|+-+.|+++.++| ++.-.+.+|.|++..|+|..|...+++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 46789999999999999999997 6777778999999999999999988764
No 17
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0013 Score=44.49 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK 80 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~ 80 (95)
...+..+...+...+.++.|+.+.++++...+++ ...+.+|.+++..|+|..|...+++. ...+.+....+..|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3345566667788999999999999999887542 46788899999999999999987753 233456667777899
Q ss_pred HHHHccc
Q 040780 81 CLEELKE 87 (95)
Q Consensus 81 c~~~l~~ 87 (95)
++..+++
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.58 E-value=0.0011 Score=53.16 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
...++..-..+...+.|+.|+-.-++++.+.|++..-+-+|.|++..|+|..|+...++. .+.+.+..+.+-.|.++..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455677777889999999999999999999988777777899999999999999987764 2445677888899999999
Q ss_pred cccHHHHHh
Q 040780 85 LKEWEQCLS 93 (95)
Q Consensus 85 l~~~~eal~ 93 (95)
+|+|++|+.
T Consensus 207 lg~~~eA~~ 215 (615)
T TIGR00990 207 LGKYADALL 215 (615)
T ss_pred cCCHHHHHH
Confidence 999999974
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=97.58 E-value=0.00038 Score=55.40 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=36.8
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
..++++.|+-..++++.++| +++..+.+|.+++..|++.+|+..+++. .+.+.++...+..+..++..++++||+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence 44556666666666666554 3344455555666666666555555442 122223333333333444455555544
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.58 E-value=0.00016 Score=41.27 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
...+..++|+.|+-.-++++...| +++..+++|.|++..|++..|...++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677778888888888877776 667777778888888888888777665
No 21
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.50 E-value=0.00083 Score=46.96 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc---hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh---hHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DP---ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR---FRYL 77 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~---~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~---c~yL 77 (95)
.+.+-.....++..++|+.|+-.-+++....| ++ +..+.+|.+++..|++..|...+++. ...+.++. ..|.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 45666777889999999999999999999886 33 35588999999999999999988763 11223333 5788
Q ss_pred HHHHHHHc--------ccHHHHHhc
Q 040780 78 AAKCLEEL--------KEWEQCLSM 94 (95)
Q Consensus 78 ~A~c~~~l--------~~~~eal~~ 94 (95)
.|.|.++. +++++|+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~ 137 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEA 137 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHH
Confidence 89999876 778888764
No 22
>PRK15331 chaperone protein SicA; Provisional
Probab=97.49 E-value=0.00096 Score=46.37 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAK 80 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~ 80 (95)
++.++.+-..-.+.-.++.|++|.=+---|+..++ +++-.+=||-|+-..|+|..|+..-.-.. +...+|.--|-.|+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 67788888889999999999999988888888886 78888888999999999999987654332 23456667788999
Q ss_pred HHHHcccHHHHHhc
Q 040780 81 CLEELKEWEQCLSM 94 (95)
Q Consensus 81 c~~~l~~~~eal~~ 94 (95)
|.+.+++..+|...
T Consensus 114 C~l~l~~~~~A~~~ 127 (165)
T PRK15331 114 CQLLMRKAAKARQC 127 (165)
T ss_pred HHHHhCCHHHHHHH
Confidence 99999999998764
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.46 E-value=0.0014 Score=52.53 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=5.3
Q ss_pred HHHHHHHcccHHHH
Q 040780 78 AAKCLEELKEWEQC 91 (95)
Q Consensus 78 ~A~c~~~l~~~~ea 91 (95)
.|.++.+.|++++|
T Consensus 473 lg~~~~~~g~~~~A 486 (615)
T TIGR00990 473 YGELLLDQNKFDEA 486 (615)
T ss_pred HHHHHHHccCHHHH
Confidence 33333333333333
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.44 E-value=0.0017 Score=51.36 Aligned_cols=86 Identities=21% Similarity=0.134 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+.+-+...++ +.|+-+.+|++.+.| ++..+..+|.+++..|++..|...+++. ...+..+...+..|.++.+.|
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 3445566677778 789999999999986 6777889999999999999999988764 223446788888999999999
Q ss_pred cHHHHHhcC
Q 040780 87 EWEQCLSML 95 (95)
Q Consensus 87 ~~~eal~~L 95 (95)
++++|+..+
T Consensus 886 ~~~~A~~~~ 894 (899)
T TIGR02917 886 RKAEARKEL 894 (899)
T ss_pred CHHHHHHHH
Confidence 999998753
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.41 E-value=0.0033 Score=41.93 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
..-+...++++.|+-+.++++..+| +++..+.+|.+++..|++.+|...+++.. ....++....+.+++....|++++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 3344566677777777777766664 45556666777777777777766665431 112344455566666666666666
Q ss_pred HHh
Q 040780 91 CLS 93 (95)
Q Consensus 91 al~ 93 (95)
|..
T Consensus 222 a~~ 224 (234)
T TIGR02521 222 AQR 224 (234)
T ss_pred HHH
Confidence 654
No 26
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00063 Score=38.77 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
|.+|..++..|+|..|...++.. ...+.++...+..|.|+...|++++|+..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 53 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAY 53 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46899999999999999988763 12356788999999999999999999864
No 27
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.36 E-value=0.0028 Score=46.55 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=65.8
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc----ChhhHHHHHHHHHHcc
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR----DLRFRYLAAKCLEELK 86 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~----~~~c~yL~A~c~~~l~ 86 (95)
-.-...+++++.|+-.+++.+.+.| ++...+.+|.+++..|++..|...+++.- .... ...+.+..|.++...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 3456789999999999999999997 56677889999999999999999987642 1111 1234557899999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 201 ~~~~A~~~ 208 (355)
T cd05804 201 DYEAALAI 208 (355)
T ss_pred CHHHHHHH
Confidence 99999875
No 28
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.34 E-value=0.0042 Score=40.95 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=52.4
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcCccccc----ChhhHHHHHHHHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNASKIVLR----DLRFRYLAAKCLE 83 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~----~~~c~yL~A~c~~ 83 (95)
-+...+..+.++.+.-..+++....|+ ....+.+|.+++..|++..|...++...-..+ .+..++-.|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 344444677777777777777776653 23566677777777777777776654311111 1235555677777
Q ss_pred HcccHHHHHhcC
Q 040780 84 ELKEWEQCLSML 95 (95)
Q Consensus 84 ~l~~~~eal~~L 95 (95)
..|+|++|+..|
T Consensus 97 ~~~~~d~Al~~L 108 (145)
T PF09976_consen 97 QQGQYDEALATL 108 (145)
T ss_pred HcCCHHHHHHHH
Confidence 777777777653
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=97.32 E-value=0.00086 Score=53.40 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=64.1
Q ss_pred CChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 20 HLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.++.|+-.++|++.++| +++....+|.++...|++..|...+++. .+.+.++...+..|.++...|+++||+..
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 347899999999999997 6667778899999999999999988764 34456777888899999999999999865
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.29 E-value=0.00054 Score=39.36 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC-CHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGR-HYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~-~~~~A~~ll~~ 64 (95)
+...=..+...++|+.|+-.-++.+..+| ++.-.+.+|.|++..| ++.+|+..+++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444555666777777777777777665 4555566677777776 56666665554
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.28 E-value=0.0007 Score=43.31 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=53.2
Q ss_pred HHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 30 DKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 30 ekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++++..+| +.+..+.+|.+++..|++..|...++.. ...+.++...+..|.|+++.+++++|+..
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666675 5678899999999999999999988763 22356778899999999999999999864
No 32
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.27 E-value=0.0086 Score=40.20 Aligned_cols=88 Identities=13% Similarity=-0.121 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK 80 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~ 80 (95)
...+-.+...+..+++|+.|+-+.++.+.+.+++ ...+-+|.++...|++..|+..+++. .+.+.........|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4445566778889999999999999999887543 25677899999999999999988764 122233333333344
Q ss_pred HH-------HHcccHHHHHh
Q 040780 81 CL-------EELKEWEQCLS 93 (95)
Q Consensus 81 c~-------~~l~~~~eal~ 93 (95)
.. .++|++++|+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHhhHHHHHcccHHHHHH
Confidence 44 48888886653
No 33
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.25 E-value=0.0097 Score=39.21 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=67.5
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHccc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
+.....+.+.|+.|+=.=+++....++++ ..+.+|.+++..|+|..|...++...-....+....+.|.++.+.|+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCC
Confidence 34567789999999999999888765433 56778999999999999999998753333456678899999999999
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
+++|+.+
T Consensus 134 ~~~A~~~ 140 (145)
T PF09976_consen 134 YDEARAA 140 (145)
T ss_pred HHHHHHH
Confidence 9999864
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.0011 Score=38.03 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=47.4
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc-cHHHHHhc
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK-EWEQCLSM 94 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~-~~~eal~~ 94 (95)
++...+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.|+.++| ++++|+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3456778899999999999999988764 344667888999999999999 79999863
No 35
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.00042 Score=39.64 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=38.3
Q ss_pred HhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 49 LFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 49 l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
++..|+|..|+.++++. ...+.+...++..|+|+++.|++++|...|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 48 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELL 48 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46789999999998864 234568889999999999999999998753
No 36
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.0057 Score=45.34 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHH----hcCcccccChhhHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLL----NASKIVLRDLRFRYLAAK 80 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll----~~~~l~~~~~~c~yL~A~ 80 (95)
+-..-.+.+..+.|++|.=---.-+.--| .++.-|||++|+|..|+|.+|.... ++++-..+.+...+=.|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444555666668887632222222223 5889999999999999999996644 455555678888999999
Q ss_pred HHHHcccHHHHHhcC
Q 040780 81 CLEELKEWEQCLSML 95 (95)
Q Consensus 81 c~~~l~~~~eal~~L 95 (95)
|..++++-++|-..|
T Consensus 224 ~~~~l~~~d~A~atl 238 (262)
T COG1729 224 SLGRLGNTDEACATL 238 (262)
T ss_pred HHHHhcCHHHHHHHH
Confidence 999999999987653
No 37
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.00062 Score=39.45 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=43.0
Q ss_pred HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 45 QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 45 lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
|.+.++.+++|..|...++.. .+.+.++...+..|.|+.++|+|++|+..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHH
Confidence 457899999999999998864 344678888999999999999999998753
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.19 E-value=0.0038 Score=50.85 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=40.2
Q ss_pred HHhCChhh----HHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780 17 VSKHLYSS----AIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 17 l~~~~y~~----AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
...+.++. |+.+.++++.++| ++.....+|..+...|++..|...+++. .+.+.++...+..|.++.+.|++++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44455553 5555566555554 3444455566666666666665555432 1223344445555555555555555
Q ss_pred HHh
Q 040780 91 CLS 93 (95)
Q Consensus 91 al~ 93 (95)
|+.
T Consensus 337 A~~ 339 (656)
T PRK15174 337 ASD 339 (656)
T ss_pred HHH
Confidence 554
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.0008 Score=54.91 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=64.6
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
++.+.+++.|.|.-.|++.++| +.-=+-.++..+.+.|+...|+.++++. -++.+++.|+|=-|+.++.+++|+||+.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 5678889999999999988887 3444555688888999999999888875 3567888899999999999999999886
Q ss_pred cC
Q 040780 94 ML 95 (95)
Q Consensus 94 ~L 95 (95)
.|
T Consensus 579 ~L 580 (638)
T KOG1126|consen 579 EL 580 (638)
T ss_pred HH
Confidence 54
No 40
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.17 E-value=0.0025 Score=51.91 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-++..+...+.++.++.|+=..+.+++..| +++..+.++.+....|++..|...+++- .+.+.++...+..|..+.+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 345555555555555555555555555553 4445555555555555555555544432 11223344444445555555
Q ss_pred ccHHHHHh
Q 040780 86 KEWEQCLS 93 (95)
Q Consensus 86 ~~~~eal~ 93 (95)
|++++|+.
T Consensus 124 g~~~~Ai~ 131 (656)
T PRK15174 124 KQYATVAD 131 (656)
T ss_pred CCHHHHHH
Confidence 55555443
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.12 E-value=0.0062 Score=45.17 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=43.4
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc-cccC-hhhHHHHHHHHHHcccHHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI-VLRD-LRFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~~-~~c~yL~A~c~~~l~~~~ea 91 (95)
.+..+++++.|+-+.+++...+| +....+.+|.++...|++.+|+..+++..- .+.+ .......+.++.+.|++++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666666666654 344556666666667777666666654310 0011 11223445555666666666
Q ss_pred Hh
Q 040780 92 LS 93 (95)
Q Consensus 92 l~ 93 (95)
+.
T Consensus 269 ~~ 270 (389)
T PRK11788 269 LE 270 (389)
T ss_pred HH
Confidence 54
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.0015 Score=39.23 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+-.+..-+...++|+.|+-+.++ ...++ +++..+++|.|++..|+|..|+..+++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 44467788999999999999999 55554 568889999999999999999998875
No 43
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.08 E-value=0.0084 Score=44.47 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchh------HHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPAD------VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~------~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
+..++.-+...++|+.|+-..+++....+.+.. ...+|.+++..|++..|...+++. ...+.+....+..|..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 444555666777888888888877766643221 124677777888888887777653 1223455677778888
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+.+.|++++|+..
T Consensus 224 ~~~~g~~~~A~~~ 236 (389)
T PRK11788 224 ALAQGDYAAAIEA 236 (389)
T ss_pred HHHCCCHHHHHHH
Confidence 8888888888764
No 44
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0035 Score=51.09 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+.+=+-|..+..++-|+.|+=-++|++...| ++++++..--|+...++|..|+.+++.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~ 72 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN 72 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc
Confidence 3444555556666666666666666666654 3344444455555555555555555444
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.06 E-value=0.0075 Score=40.06 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=60.0
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
.+-.-+...++|+.|+.+-++++.++| +++..+-+|.|+...|++..|+..++.. .+.+.++.-..+.+..+..++
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 344446789999999999999999996 7889999999999999999999988764 233455666666666665544
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.04 E-value=0.0048 Score=45.46 Aligned_cols=76 Identities=12% Similarity=-0.075 Sum_probs=42.7
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
..+.++.|+-.-++++.++| +++..+.+|..+...|++..|....++. .+.+.+....+-.|.+++..|++++|+.
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44566666666666666664 4455555666666666666666555442 1223344444555666666666666654
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.01 E-value=0.0061 Score=50.46 Aligned_cols=82 Identities=6% Similarity=-0.158 Sum_probs=68.3
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
..-......++.|+.++++++..+| +++..+.+|.++-..|+|.+|..+.++-- ..........=.|.++-+.|+.++
T Consensus 127 a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 127 LRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3344568999999999999999997 78899999999999999999999887642 123456677778999999999999
Q ss_pred HHhc
Q 040780 91 CLSM 94 (95)
Q Consensus 91 al~~ 94 (95)
|..+
T Consensus 207 A~~~ 210 (694)
T PRK15179 207 ARDV 210 (694)
T ss_pred HHHH
Confidence 9865
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.93 E-value=0.0082 Score=51.65 Aligned_cols=85 Identities=15% Similarity=0.003 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
..........++++.|+-+-++++.++| ++...+.+|.+++..|++..|...+++. ...+.++...|..|..+.+.++
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 3445567789999999999999999997 6777889999999999999999988763 1234567777888888888999
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
+++|+..
T Consensus 545 ~~~Al~~ 551 (1157)
T PRK11447 545 DRAALAH 551 (1157)
T ss_pred HHHHHHH
Confidence 9999764
No 49
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.84 E-value=0.01 Score=39.03 Aligned_cols=80 Identities=20% Similarity=0.074 Sum_probs=63.3
Q ss_pred HHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcCcc-ccc---ChhhHHHHHHHHHHccc
Q 040780 16 CVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNASKI-VLR---DLRFRYLAAKCLEELKE 87 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~---~~~c~yL~A~c~~~l~~ 87 (95)
+=..|..+.|+-+-++..+...+ ...+.-+|.++...|++.+|..++++.-. .+. +...+++.|-++..+|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 34568899999999999886522 34677899999999999999999986421 122 55678889999999999
Q ss_pred HHHHHhcC
Q 040780 88 WEQCLSML 95 (95)
Q Consensus 88 ~~eal~~L 95 (95)
++||+..+
T Consensus 91 ~~eAl~~~ 98 (120)
T PF12688_consen 91 PKEALEWL 98 (120)
T ss_pred HHHHHHHH
Confidence 99998753
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.75 E-value=0.014 Score=50.05 Aligned_cols=81 Identities=12% Similarity=0.004 Sum_probs=56.8
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea 91 (95)
.-+...+.++.|+-+.++++.++| ++.....+|.++...|++..|+..+++. .+.+.++...+-.|.++..+|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345566777777777777777775 5566666777777777777777766653 23345667777778888888888877
Q ss_pred Hhc
Q 040780 92 LSM 94 (95)
Q Consensus 92 l~~ 94 (95)
+..
T Consensus 697 ~~~ 699 (987)
T PRK09782 697 QHY 699 (987)
T ss_pred HHH
Confidence 754
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.74 E-value=0.0044 Score=44.65 Aligned_cols=80 Identities=19% Similarity=0.018 Sum_probs=33.4
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc-cccChhhHHHHHHHHHHcccHHHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI-VLRDLRFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~c~~~l~~~~ea 91 (95)
.-+...|+++.|+-.-++++..+| +++-...++..+...|++.++..+++...- ..+++....-+|.++..+|++++|
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 334445555555555555555554 233333344444444555444443332210 022333333344555555555544
Q ss_pred Hh
Q 040780 92 LS 93 (95)
Q Consensus 92 l~ 93 (95)
+.
T Consensus 234 l~ 235 (280)
T PF13429_consen 234 LE 235 (280)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.73 E-value=0.014 Score=44.36 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+-.-++..+.|+.|+-.+++++.++| ++...+.+|.+++..|+|..|+..+++. .+...+.......++|-.+++
T Consensus 39 ~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 39 YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 33445567888999999999999999997 6778888999999999999999988764 345667888888899977775
Q ss_pred cH
Q 040780 87 EW 88 (95)
Q Consensus 87 ~~ 88 (95)
+.
T Consensus 119 ~~ 120 (356)
T PLN03088 119 EE 120 (356)
T ss_pred hh
Confidence 43
No 53
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0081 Score=49.03 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+-+|.-|---|....|++|+-+-++-.+..-..---|-.|-|.|+.|+...|...++. +.........|.|+.||+++
T Consensus 47 ~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~ 124 (652)
T KOG2376|consen 47 DAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLE 124 (652)
T ss_pred hhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc--ccccchHHHHHHHHHHHHHh
Confidence 4467777777889999999977777655432111116889999999999999999994 44556678899999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
+|+||+++
T Consensus 125 ~ydealdi 132 (652)
T KOG2376|consen 125 RYDEALDI 132 (652)
T ss_pred hHHHHHHH
Confidence 99999875
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.68 E-value=0.022 Score=47.16 Aligned_cols=85 Identities=16% Similarity=0.041 Sum_probs=72.5
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
.....-....+.++.|+-..+++....| +++-.+.+|.++...|++.+|...+++. .+.+.++...+..|....++++
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 3445566788999999999999999997 6778888899999999999999999874 2345678889999999999999
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
|++|+.+
T Consensus 443 ~~~A~~~ 449 (765)
T PRK10049 443 WRQMDVL 449 (765)
T ss_pred HHHHHHH
Confidence 9999875
No 55
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.013 Score=38.32 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..++-++.++..++..+.++.|+-++++++..+| ++.....+-.+|...|++..|....++
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34466778888889999999999999999999999 555666679999999999999888765
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.66 E-value=0.0062 Score=43.90 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~ 84 (95)
+-+..+++-.++.+.++.|.-.-+++.... ++|.-...+|.+++..|++..|...+++.- ..+.++.....+|.++..
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 346678888899999999888888887776 466666778999999999999999887642 235678888888999999
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
.|++++|..+
T Consensus 261 ~g~~~~A~~~ 270 (280)
T PF13429_consen 261 AGRKDEALRL 270 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998865
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.63 E-value=0.023 Score=41.79 Aligned_cols=83 Identities=19% Similarity=-0.016 Sum_probs=60.5
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
.+-.-+...++|+.|+-..++++.++| ++...+.+|.+++..|++..|+..+++.- +.+.++ .+.+........+++
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAESKLDP 181 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHccCCH
Confidence 344566788999999999999999997 45566788999999999999999887641 122232 234444444556778
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
++|+..
T Consensus 182 ~~A~~~ 187 (296)
T PRK11189 182 KQAKEN 187 (296)
T ss_pred HHHHHH
Confidence 888764
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.59 E-value=0.006 Score=37.47 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=45.1
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc---ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLNASK-IVLR---DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~---~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++.+|-+|..++..|++..|...+...- ..+. .....+..|.++.+.+++++|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 61 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKA 61 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHH
Confidence 5788999999999999999999886531 1111 245789999999999999999875
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.55 E-value=0.028 Score=48.27 Aligned_cols=76 Identities=11% Similarity=-0.011 Sum_probs=63.5
Q ss_pred hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.++++.|+-+.++++.++|+++..+-+|.++...|++..|...+++. .+.+.++...+-.|.++.+.|+++||+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 38999999999999999888777788899999999999998888764 34466777888888999999999998764
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.55 E-value=0.022 Score=47.13 Aligned_cols=84 Identities=10% Similarity=-0.054 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+..-+...++++.|+-.-+++++.+| +++..+.+|.++...|++.+|...+++. ...+.+.. .+..|..+...+
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 33444455556666666666666666654 3444555566666666666666555542 12233444 555566666666
Q ss_pred cHHHHHh
Q 040780 87 EWEQCLS 93 (95)
Q Consensus 87 ~~~eal~ 93 (95)
++++|+.
T Consensus 131 ~~~~Al~ 137 (765)
T PRK10049 131 RHWDELR 137 (765)
T ss_pred CHHHHHH
Confidence 6666554
No 61
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.43 E-value=0.027 Score=43.89 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 46 AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 46 A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
|..+...|+|.-|..+.++. .+.+..-.+-|..|+|+.++|+|++|+.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44444444444444444432 11222334566667777777777777654
No 62
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.0059 Score=35.80 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcC-------ccc-ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNAS-------KIV-LRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~-------~l~-~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
....+|.+++..|+|.+|+...++. +-. .....+.+-.|.|+..+|++++|+..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 68 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566788888888888887777643 111 11255777788888888888888764
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.42 E-value=0.024 Score=45.59 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=63.0
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH---HHHccc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC---LEELKE 87 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c---~~~l~~ 87 (95)
+.+++-..++|+.|+.+.|+.+..+|. ++--++.|.++-+.|++..|...++... .-.+.=|||-.+| +++.|+
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar--~LD~~DRyiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR--ELDLADRYINSKCAKYLLRAGR 277 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hCChhhHHHHHHHHHHHHHCCC
Confidence 345566778999999999999999984 6666677999999999999999998753 2334456665555 568999
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
.++|+..
T Consensus 278 ~e~A~~~ 284 (517)
T PF12569_consen 278 IEEAEKT 284 (517)
T ss_pred HHHHHHH
Confidence 9999864
No 64
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.38 E-value=0.045 Score=39.61 Aligned_cols=80 Identities=8% Similarity=-0.069 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLA 78 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~ 78 (95)
+.+-......+..++|+.|+-.=+++....|.++ ..+++|.++|..|+|..|....++ ++-++..+...|+.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3344556677889999999999999999987433 459999999999999999876654 44344556788999
Q ss_pred HHHHHHcc
Q 040780 79 AKCLEELK 86 (95)
Q Consensus 79 A~c~~~l~ 86 (95)
|.|...++
T Consensus 113 g~~~~~~~ 120 (243)
T PRK10866 113 GLTNMALD 120 (243)
T ss_pred HHhhhhcc
Confidence 99976654
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.36 E-value=0.05 Score=41.65 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=66.0
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcCCch-hHH-HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTNDPA-DVY-MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~-~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
..-+...++++.|.-+-+++...+|++. .+. +.+..+...|++..|...+++- ...++|+....+.+..+.+.|+|+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 3445889999999999999988777553 332 4488999999999999988763 344678889999999999999999
Q ss_pred HHHhcC
Q 040780 90 QCLSML 95 (95)
Q Consensus 90 eal~~L 95 (95)
+++.+|
T Consensus 205 ~a~~~l 210 (398)
T PRK10747 205 SLLDIL 210 (398)
T ss_pred HHHHHH
Confidence 998653
No 66
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.28 E-value=0.049 Score=47.00 Aligned_cols=83 Identities=10% Similarity=-0.069 Sum_probs=60.3
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
+-.-+...++++.|+-.-++++..+| +++..+-+|.++...|++..|...+++.. ..+.++......|.+..+.|+++
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 34456677888888888888888886 66777778888888888888888777531 12234555566778888888888
Q ss_pred HHHhc
Q 040780 90 QCLSM 94 (95)
Q Consensus 90 eal~~ 94 (95)
+|+..
T Consensus 689 eA~~~ 693 (1157)
T PRK11447 689 AAQRT 693 (1157)
T ss_pred HHHHH
Confidence 88754
No 67
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.16 E-value=0.058 Score=37.66 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRY 76 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~y 76 (95)
..+.+-..-...+..++|+.|+-.=+++....| .++..+++|.++|..|+|..|...+++ ++-....+...|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344566677889999999999999999998876 366999999999999999999887654 333334456889
Q ss_pred HHHHHHHHc
Q 040780 77 LAAKCLEEL 85 (95)
Q Consensus 77 L~A~c~~~l 85 (95)
+.|.|.++.
T Consensus 84 ~~g~~~~~~ 92 (203)
T PF13525_consen 84 MLGLSYYKQ 92 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 68
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.09 E-value=0.017 Score=32.16 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=43.3
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+.+|.+++..|++..|...++.. ...+.+....+..|.++...+++++|+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALED 56 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999988763 22344556778899999999999999864
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.97 E-value=0.043 Score=42.03 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=66.6
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc---Ccc---------------------
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA---SKI--------------------- 67 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~---~~l--------------------- 67 (95)
.+-++.+++++.|+=..+++....| +++-..+++.++...|++.+|..++.. .+.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999997 788889999999999999999855532 110
Q ss_pred -------------------cccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 68 -------------------VLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 68 -------------------~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
..+++.....+|+.+...|+.++|..+|
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1124556677899999999999988753
No 70
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.87 E-value=0.094 Score=41.93 Aligned_cols=82 Identities=24% Similarity=0.102 Sum_probs=67.4
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
.++-.+..+.++.|+-..+|+++++|+ +-=...+|+.|+..|++.+|+.+|+... -++..+..-.+.|+.+-++|+-.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 445578899999999999999999984 6667788999999999999999998753 23456778888999999988877
Q ss_pred HHHh
Q 040780 90 QCLS 93 (95)
Q Consensus 90 eal~ 93 (95)
++..
T Consensus 426 ~a~~ 429 (484)
T COG4783 426 EALL 429 (484)
T ss_pred HHHH
Confidence 7654
No 71
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.82 E-value=0.098 Score=35.54 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh---hhHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL---RFRYL 77 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~---~c~yL 77 (95)
.+.|-+--.+.++.++|+.|+-.=|.+-+-.| .+..-..++.++|.+|+|..|+..+++. +++++|+ -..|+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 44566677889999999999999999887775 4668899999999999999999887763 3444554 45778
Q ss_pred HHHHHHHccc
Q 040780 78 AAKCLEELKE 87 (95)
Q Consensus 78 ~A~c~~~l~~ 87 (95)
.|.+.++...
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8888887654
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.64 E-value=0.095 Score=36.48 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCC-ch---hHHHHHHHHhhC--------CCHHHHHHHHhcCc-ccccChhh----
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTND-PA---DVYMQAQALFLG--------RHYRRAFHLLNASK-IVLRDLRF---- 74 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~---~~~llA~~l~~~--------~~~~~A~~ll~~~~-l~~~~~~c---- 74 (95)
+-.-+...++++.|+-..++++..+|+ ++ ..|.+|.|++.. |++..|...+++.- ..+.+...
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 344567789999999999999999973 43 578999999986 88999988887531 01122111
Q ss_pred -------------HHHHHHHHHHcccHHHHHhc
Q 040780 75 -------------RYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 75 -------------~yL~A~c~~~l~~~~eal~~ 94 (95)
.+-.|..+++.|++++|+..
T Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 156 KRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 12346778888999998864
No 73
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.57 E-value=0.14 Score=40.03 Aligned_cols=78 Identities=23% Similarity=0.217 Sum_probs=62.4
Q ss_pred HHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 15 DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
-.-..+.|+.|+-+-|++...+ |+...++|.++...++-..|+.++++.= ..+.+.....+.|+.+++.++++.|+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344678999999999987665 6788899999999999999999998741 112345566778999999999999987
Q ss_pred c
Q 040780 94 M 94 (95)
Q Consensus 94 ~ 94 (95)
+
T Consensus 256 i 256 (395)
T PF09295_consen 256 I 256 (395)
T ss_pred H
Confidence 5
No 74
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.50 E-value=0.42 Score=32.94 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCcccc-cChhhHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASKIVL-RDLRFRYLAAK 80 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~-~~~~c~yL~A~ 80 (95)
++.+.-|.+.++..+.....+++.-+=|-+..+-|+ ++--..-+--+...|+|..|++++++-.-.. ..+.|+=|.|.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 567788889999999999999999999999999974 4433334666899999999999998753333 34889999999
Q ss_pred HHHHccc
Q 040780 81 CLEELKE 87 (95)
Q Consensus 81 c~~~l~~ 87 (95)
|++.+++
T Consensus 87 CL~al~D 93 (153)
T TIGR02561 87 CLNAKGD 93 (153)
T ss_pred HHHhcCC
Confidence 9999987
No 75
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.13 Score=39.90 Aligned_cols=91 Identities=22% Similarity=0.267 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhh-hcCCch-hHHHH---HHHHhhCCCHHHHHHHHhc-CcccccChhhHHH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAA-LTNDPA-DVYMQ---AQALFLGRHYRRAFHLLNA-SKIVLRDLRFRYL 77 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a-~~~~~~-~~~ll---A~~l~~~~~~~~A~~ll~~-~~l~~~~~~c~yL 77 (95)
|..+-.++-=..+...-.|+.|+..--+-++ -+++++ +.-+| |-|.+..|+|.+|+.=.+. ..+.++|..|.|=
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 3334444444455666678888755555444 445444 44444 6699999999999885544 3456899999999
Q ss_pred HHHHHHHcccHHHHHhc
Q 040780 78 AAKCLEELKEWEQCLSM 94 (95)
Q Consensus 78 ~A~c~~~l~~~~eal~~ 94 (95)
-|+|+++|+++.+|+++
T Consensus 159 ~Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNW 175 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.42 E-value=0.059 Score=43.33 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..|.+|+.+-..|++..|+..|++. ...++.+...++.|+.+-..|++++|...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3477899999999999999999864 34567789999999999999999999764
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.36 E-value=0.12 Score=39.50 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=48.6
Q ss_pred HHHhCChhhHHHHHHHHhhhcCCch-hHHH-HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 16 CVSKHLYSSAIFFADKVAALTNDPA-DVYM-QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~~~~-~~~l-lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
+..+++++.|.-+=++.....|++. .+-+ .|..+...|++..|...++.- ...+.++....+.+..+.+.|+|++++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 4455666666666666655555443 3333 477777777777776655442 122456667777777777777777766
Q ss_pred hc
Q 040780 93 SM 94 (95)
Q Consensus 93 ~~ 94 (95)
..
T Consensus 208 ~~ 209 (409)
T TIGR00540 208 DI 209 (409)
T ss_pred HH
Confidence 53
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.22 E-value=0.11 Score=36.27 Aligned_cols=76 Identities=8% Similarity=0.023 Sum_probs=61.6
Q ss_pred hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH-HHccc--HHHHHh
Q 040780 19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL-EELKE--WEQCLS 93 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~-~~l~~--~~eal~ 93 (95)
....+.++-.-++.+..+| +++.-+.+|.++...|++..|...+++. .+.+.++...+-.|.++ ...|+ +++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4566888888888888886 7888889999999999999999988764 34567788888889987 56777 478776
Q ss_pred c
Q 040780 94 M 94 (95)
Q Consensus 94 ~ 94 (95)
+
T Consensus 132 ~ 132 (198)
T PRK10370 132 M 132 (198)
T ss_pred H
Confidence 5
No 79
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.19 E-value=0.074 Score=37.13 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcC----cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNAS----KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~----~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+++.+|..|...+..|+|..|+..++.- +-....+...+..|.++++.|+|++|+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~ 64 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA 64 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5678999999999999999999988752 22233456789999999999999999864
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.13 E-value=0.16 Score=39.35 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=32.7
Q ss_pred HhCChhhHHHHHHHHhhhcCCchhH------HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780 18 SKHLYSSAIFFADKVAALTNDPADV------YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~~~~~------~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
..-.|..||-.|+|+..+.+.+..+ .-||+.+....+..+|..++++. ..++++.....+.|+.....|+|+.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 3334555555555555554432221 11344444444455555444432 1122333334444444444444444
Q ss_pred HHh
Q 040780 91 CLS 93 (95)
Q Consensus 91 al~ 93 (95)
|++
T Consensus 233 AV~ 235 (389)
T COG2956 233 AVE 235 (389)
T ss_pred HHH
Confidence 443
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.13 E-value=0.2 Score=42.63 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHH-HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYM-QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAA 79 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~l-lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A 79 (95)
++..+-+-++..-.++.+.|+.|+=+=..+....+ +...||+ +|.||...|+|.+|+....+. .+.+.+...|.-.|
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 45567778888999999999999998888887775 3344544 599999999999998766553 23356778888888
Q ss_pred HHHHHcccHHHHHhcC
Q 040780 80 KCLEELKEWEQCLSML 95 (95)
Q Consensus 80 ~c~~~l~~~~eal~~L 95 (95)
--..++|+.++|+.+|
T Consensus 491 sl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETL 506 (895)
T ss_pred HHHHhcCCHHHHHHHH
Confidence 8889999999998765
No 82
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.07 E-value=0.037 Score=28.30 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHhhhcC-CchhHHHHHHHHhhCCCHHHHH
Q 040780 30 DKVAALTN-DPADVYMQAQALFLGRHYRRAF 59 (95)
Q Consensus 30 ekl~a~~~-~~~~~~llA~~l~~~~~~~~A~ 59 (95)
+|.+.++| +++..+.||.+|...|++.+|.
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57777886 7888899999999999998875
No 83
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.00 E-value=0.26 Score=28.56 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc---CC-----chhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT---ND-----PADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~~-----~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
..-+..+-.-+..+++|+.|+=+-++.+.+. ++ ....+-+|.|+...|++.+|...+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455666677889999999999999998774 21 22567789999999999999998876
No 84
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.97 E-value=0.13 Score=38.09 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh---hH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR---FR 75 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~---c~ 75 (95)
...+.|-+-....|+.++|++|+=.=|++-+..| ++.....++.++|.+|+|..|...+++. .+.++|+. ..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3567888889999999999999999999998886 4668999999999999999999988764 23344544 46
Q ss_pred HHHHHHHHH
Q 040780 76 YLAAKCLEE 84 (95)
Q Consensus 76 yL~A~c~~~ 84 (95)
||.|.+.+.
T Consensus 112 YlkgLs~~~ 120 (254)
T COG4105 112 YLKGLSYFF 120 (254)
T ss_pred HHHHHHHhc
Confidence 777777654
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.90 E-value=0.099 Score=43.24 Aligned_cols=81 Identities=10% Similarity=0.129 Sum_probs=71.4
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
+..+-+..||+..+=+++.++.=.| +++++-+.|..+...|+-..|+..++.. ..+.++.-|-.++|--...-++|+|
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 4457789999999999999999666 7899999999999999999999988753 2356788999999999999999999
Q ss_pred HHh
Q 040780 91 CLS 93 (95)
Q Consensus 91 al~ 93 (95)
||.
T Consensus 94 aiK 96 (700)
T KOG1156|consen 94 AIK 96 (700)
T ss_pred HHH
Confidence 986
No 86
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.85 E-value=0.37 Score=36.51 Aligned_cols=90 Identities=16% Similarity=0.053 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..++|+.-=...+....|..|+=.-++++.++|...-.| --|.+|-..|+|..|++=.++. .+++.+....-=.+..+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456677766778889999999999999999987533333 3489999999999999977764 23333333333457888
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
+.+|+|.+|+..
T Consensus 160 ~~~gk~~~A~~a 171 (304)
T KOG0553|consen 160 LALGKYEEAIEA 171 (304)
T ss_pred HccCcHHHHHHH
Confidence 899999999875
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.098 Score=40.43 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~ 87 (95)
...|..-|.-+.|.+||-.----..-+| +...+.+||.|||+..+|..|..--..-+ +.++-..-|+-.|+++++.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 3456666778889999865433333333 56689999999999999998866554421 334555678889999999999
Q ss_pred HHHHHhcC
Q 040780 88 WEQCLSML 95 (95)
Q Consensus 88 ~~eal~~L 95 (95)
|-+|+.++
T Consensus 94 ~ADALrV~ 101 (459)
T KOG4340|consen 94 YADALRVA 101 (459)
T ss_pred cHHHHHHH
Confidence 99998763
No 88
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.75 E-value=0.24 Score=42.33 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKC 81 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c 81 (95)
.+.++--.=|++.++.+|++.|+=-.+++..-.|+ +-..-+.|.++++.|++..|..+++... +-.++..-.=.+-.|
T Consensus 7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 34556566699999999999999999999999874 5567777999999999999999997643 222344445556778
Q ss_pred HHHcccHHHHHh
Q 040780 82 LEELKEWEQCLS 93 (95)
Q Consensus 82 ~~~l~~~~eal~ 93 (95)
+.++++++++..
T Consensus 87 y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 87 YRDLGKLDEAVH 98 (932)
T ss_pred HHHHhhhhHHHH
Confidence 889999999864
No 89
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.37 Score=37.35 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccCh----hhHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDL----RFRYL 77 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~----~c~yL 77 (95)
=++.+..-++.+.++-..+.+.|.+|-.|.+..+| .....-.+|......|+|..|+..+.+-- ..++ ...-.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~--eQn~~yl~evl~~ 254 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL--EQNPEYLSEVLEM 254 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH--HhChHHHHHHHHH
Confidence 35566777888999999999999999999999996 67778889999999999999998887631 2222 23344
Q ss_pred HHHHHHHcccHHHHHhcC
Q 040780 78 AAKCLEELKEWEQCLSML 95 (95)
Q Consensus 78 ~A~c~~~l~~~~eal~~L 95 (95)
...|+-++|+.+|+++.|
T Consensus 255 L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 255 LYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 578888999999988754
No 90
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.14 Score=42.21 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=66.9
Q ss_pred HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
-..+..|.|+-+-|+++.+++ +|-..|--|+.+|..++|+.|...++.-+ +.++...-.||.|+.+-++|+.+.|+.
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 356789999999999999996 99999999999999999999999998643 445666778999999999999988864
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.48 E-value=0.35 Score=38.73 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=63.9
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
-......++++.|.=.=+-|++..| |+--.-+.++.+...|++++|..-+++. .+.+..+...+.+|+.+++.|+++|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 3445667788888877777777665 3444445588999999999999999875 2344557788999999999999999
Q ss_pred HHhcC
Q 040780 91 CLSML 95 (95)
Q Consensus 91 al~~L 95 (95)
|+..|
T Consensus 393 ai~~L 397 (484)
T COG4783 393 AIRIL 397 (484)
T ss_pred HHHHH
Confidence 99865
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.47 E-value=0.43 Score=40.47 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
+..+..+...+..+.++.|+=..|+++...| +++=...+|..+...|.+.+|...++.. .+.+.....++-.|.+..+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 4455677788899999999999999999997 6777778899999999999999999764 3456777889999999999
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
+++|++|..+
T Consensus 497 l~e~~~A~~~ 506 (822)
T PRK14574 497 LQEWHQMELL 506 (822)
T ss_pred hhhHHHHHHH
Confidence 9999999543
No 93
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.45 E-value=0.16 Score=34.17 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=51.4
Q ss_pred HHHHHHHhhhcC------CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc---ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 26 IFFADKVAALTN------DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR---DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 26 iF~Aekl~a~~~------~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~---~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.-|+|....+.+ .....+.+|..+...|++..|+..+++.- .... .....+..|.++.++|++++|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 16 TVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred HHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 468888777663 23357888999999999999999887531 1111 235678889999999999999864
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.43 E-value=0.29 Score=41.49 Aligned_cols=82 Identities=10% Similarity=-0.049 Sum_probs=49.1
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-Cch--hHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPA--DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~--~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
.++.-+...++++.|+-+++|.+ ++ +.. .+-.+|..+...|+|.+|+.++++. ...+.++...+..+....+.+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 45555566677777777777777 33 222 2222355677778888877777653 122334444444466667777
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
+.++|+..
T Consensus 151 q~~eAl~~ 158 (822)
T PRK14574 151 RGGVVLKQ 158 (822)
T ss_pred CHHHHHHH
Confidence 77777654
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.27 E-value=0.42 Score=41.03 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccCh-----------
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDL----------- 72 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~----------- 72 (95)
..+-+..+|..+.+.++++.|+=.++..+..+| .+.-.|.+|..++..+++..+.-+ +--+......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHH
Confidence 355677888999999999999999999999987 677788889999999998888665 2222222222
Q ss_pred --------hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 --------RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 --------~c~yL~A~c~~~l~~~~eal~~ 94 (95)
...+-.|.|+-++|+++++..+
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 4678889999999999998764
No 96
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.15 E-value=0.1 Score=27.73 Aligned_cols=25 Identities=24% Similarity=-0.028 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 40 ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 40 ~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..+.+|..|...|++.+|..++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455666666666666666666654
No 97
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.10 E-value=1.3 Score=30.66 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc-cccChhhHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI-VLRDLRFRYLAAK 80 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~ 80 (95)
++.+.-|-+++.-.+..+..+++.-+=+-+..+.| .++--..-|.-+...|++..|..+++.-.- ....+.|+=|.|.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 67888999999999999999999999999999997 455555568889999999999999987421 1346788999999
Q ss_pred HHHHccc
Q 040780 81 CLEELKE 87 (95)
Q Consensus 81 c~~~l~~ 87 (95)
|++.+++
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 9999887
No 98
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.81 E-value=0.44 Score=36.52 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=44.5
Q ss_pred hCChhhHHHHHHHHhhhcC-Cc--hhHHHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHHHcccHHHHH
Q 040780 19 KHLYSSAIFFADKVAALTN-DP--ADVYMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~-~~--~~~~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
..+.+.++-..|+.+...| +| .-...+|..+++.|+|..|...+++ ....+.+.... -.|..+.++|+.++|.
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAA 390 (409)
T ss_pred CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHH
Confidence 3445666666677666665 44 3344667777777777777777772 22223333333 4577777777776665
Q ss_pred h
Q 040780 93 S 93 (95)
Q Consensus 93 ~ 93 (95)
+
T Consensus 391 ~ 391 (409)
T TIGR00540 391 A 391 (409)
T ss_pred H
Confidence 4
No 99
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.77 E-value=0.11 Score=25.44 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 40 ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 40 ~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..+.+|.+++..|+|..|+..+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4568899999999999999988876
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.45 E-value=0.33 Score=35.57 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+|.++...|++.+|...+++. .+.+.++......|.++++.|+++||+..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 45567889999999998877764 22344566677788899999999998764
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.44 E-value=0.26 Score=34.05 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=43.6
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+-..++|..||..-.+...+++ +|...+-.|.|++..|+...|..-++.
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457899999999999999996 899999999999999999999877765
No 102
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.39 E-value=0.31 Score=36.23 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCHHHHHHHH----hcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 42 VYMQAQALFLGRHYRRAFHLL----NASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 42 ~~llA~~l~~~~~~~~A~~ll----~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.|--|.-++.+|+|..|.... ++++-....+...|..|.|.+..|+|++|..+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~ 200 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI 200 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH
Confidence 799999999999999997655 45544456788999999999999999998754
No 103
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.41 Score=37.84 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=55.0
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcCCch--hHHHHHHHHhhCCCHHHHHHHHhcC--cccccChhhHHHHHHHHHHcccH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTNDPA--DVYMQAQALFLGRHYRRAFHLLNAS--KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~--~~~llA~~l~~~~~~~~A~~ll~~~--~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
..+.+.+..|+-|+-+-|--..++..++ --.|+|.|+|+.|+|++|...-+.- +-+... ..-.=.|-|.+-+|.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~-el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA-ELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc-ccchhHHHHHHHHHHH
Confidence 4677889999999988887766664333 3468999999999999997755431 111111 1112235677789999
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
.||..+
T Consensus 108 ~eA~~~ 113 (557)
T KOG3785|consen 108 IEAKSI 113 (557)
T ss_pred HHHHHH
Confidence 998754
No 104
>PRK11906 transcriptional regulator; Provisional
Probab=92.97 E-value=0.52 Score=37.62 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=59.6
Q ss_pred hhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 23 SSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 23 ~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..|.=.|+|.+.+++ ++-..+.+|..+...|++..|..++++.. +.+......|..|.-+.-.|+.++|+..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 458889999999996 78899999999999999999999998764 4456677788888888889999888753
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.78 E-value=1.2 Score=35.13 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
+||+.+..+...+.+.+||-+-+.++.+++=..+++.+ |.||..-|+++.|++=++.. ++...+...-|=.++-+|..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 56677777778889999999999999999855666665 99999999999999977643 34444445555566666666
Q ss_pred ccHHHHH
Q 040780 86 KEWEQCL 92 (95)
Q Consensus 86 ~~~~eal 92 (95)
+.-++++
T Consensus 237 gd~~~sL 243 (504)
T KOG0624|consen 237 GDAENSL 243 (504)
T ss_pred hhHHHHH
Confidence 6555544
No 106
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.66 E-value=0.14 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 40 ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 40 ~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..|.+|.|++..|++.+|...++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3578899999999999999888775
No 107
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.64 E-value=0.76 Score=37.49 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
++-+.=+--.+++..-++.||-+-||..-+.|+ ..--...|.|+.++|+|++|+.+.+.- .-.+..+.|.-...|-|-
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 344444556899999999999999999888764 344456699999999999999988652 123457788777777777
Q ss_pred Hcc
Q 040780 84 ELK 86 (95)
Q Consensus 84 ~l~ 86 (95)
++|
T Consensus 706 dlg 708 (840)
T KOG2003|consen 706 DLG 708 (840)
T ss_pred ccc
Confidence 655
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.57 E-value=0.34 Score=38.60 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
.-+...+.|+.|+-..++.+.++|+.. ..|-+|-||-..|++..|+..+++.
T Consensus 83 ~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 83 LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344556777777777777777776433 2567777777777777777777664
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.01 E-value=1.7 Score=34.15 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=58.0
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHH--HHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLA--AKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~--A~c~~~l~~~~ 89 (95)
+-+.++..|++..|.=.----+...+.++.-.+|+.+|.+-+|+.+|..++... ++...-.-.|+. ||..-++++++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~g-ld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEG-LDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhh-hhcCCchhhhhhhhHHHHHHHHhHH
Confidence 445688899999876544444444478888888999999999999999988753 333333344444 56666799998
Q ss_pred HHHh
Q 040780 90 QCLS 93 (95)
Q Consensus 90 eal~ 93 (95)
+|++
T Consensus 308 ~a~~ 311 (478)
T KOG1129|consen 308 DALQ 311 (478)
T ss_pred HHHH
Confidence 8875
No 110
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.71 E-value=0.96 Score=30.71 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCchhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 37 NDPADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.++..+|.-|+-.+.+|+|..|+..++. ++.-........-.+.+.++.++|.+|+..
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~ 69 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA 69 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 4678999999999999999999988864 222233456777889999999999999864
No 111
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=2.2 Score=34.80 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH--HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY--MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~--llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
...++..=..+-.++.|++||=+-+....++|++ .+| -.|-||-..|++...+.-.++. .+.+++....+=-|+..
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 3455666677888999999999999999999874 343 3588999999999998877664 34455556666667788
Q ss_pred HHcccHHHHHh
Q 040780 83 EELKEWEQCLS 93 (95)
Q Consensus 83 ~~l~~~~eal~ 93 (95)
-.+|+++||+.
T Consensus 194 E~lg~~~eal~ 204 (606)
T KOG0547|consen 194 EQLGKFDEALF 204 (606)
T ss_pred HhhccHHHHHH
Confidence 88999999974
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=2 Score=32.44 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=62.2
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHH---HHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYR---RAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~---~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
+-++.++.+++|.---.+.+-+.| +++-.-.+|.+++.+..-+ .+-.++++. .++..++..+++.|...++.++|
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 457888999999988888888886 6777777888887765443 334455543 34567899999999999999999
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
.+|+..
T Consensus 244 ~~A~~~ 249 (287)
T COG4235 244 AEAAAA 249 (287)
T ss_pred HHHHHH
Confidence 999753
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.66 E-value=0.97 Score=32.65 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccCh---hhHHHHHHHHHHcccHHHHHhc
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDL---RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~---~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+++..|..|.-.+..|+|..|+..++.-. ..+.++ ...+-.|.++++.++|++|+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~ 91 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA 91 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56688999999999999999999887531 112222 2347889999999999999864
No 114
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.65 E-value=1.4 Score=35.56 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=46.3
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK 66 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~ 66 (95)
+.--.+|.|..+.+++.=+..+.|+|...-++|.|++-+.+|.+|...+++-+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34456899999999999999999999999999999999999999999998754
No 115
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.57 E-value=1 Score=29.46 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=44.5
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHhcC---ccccc-ChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLNAS---KIVLR-DLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~~~---~l~~~-~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
|.-.|..|-++-..|++.+|+.+.++. ++... ...+..-.|.++..+|+++||+.+|
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345788999999999999999988763 33221 2356677899999999999999764
No 116
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.52 E-value=1.3 Score=32.60 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=44.7
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.-+...++|+.|+...++++...| .++.++.+|.++...|++..|...+++
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456788999999999999998775 477889999999999999999998875
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=90.22 E-value=0.52 Score=41.08 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=67.0
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
.+++.++...|+=|.--.+-.+| +-+.---+++.|-.+|.|..|....++.. +.+.|...+|.-|-.--++|+|.|++
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 35778889999988888777776 45555568999999999999999997764 45667888999999999999999999
Q ss_pred hcC
Q 040780 93 SML 95 (95)
Q Consensus 93 ~~L 95 (95)
+++
T Consensus 651 d~l 653 (1238)
T KOG1127|consen 651 DAL 653 (1238)
T ss_pred HHH
Confidence 864
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=2.2 Score=33.50 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=47.8
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+--.++....|+.|+=+++|++.+++ |...+|.-|+++...|+|.-|...+++.
T Consensus 263 lA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 263 LAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33456778899999999999999995 8999999999999999999999988764
No 119
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=1.4 Score=35.46 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=50.9
Q ss_pred hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
.-.|.+|+.++||..-.++ +.+..-+.|..+...|++..|+.-.+.. .+.+..+.|.=-.-.|+++.|++.||.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 4457788888888877774 6777777788888888888877666543 233344555545556777788888775
No 120
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.75 Score=34.34 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhc-CcccccChhhHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNA-SKIVLRDLRFRYLAAK 80 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~-~~l~~~~~~c~yL~A~ 80 (95)
+++.+++.+--..+-..-.|++||=---|.++.+|.+.+-|.- |.|++..+++..+-.=.++ -.++.....--|..+.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 4566777776667777778899998777888888876555554 8899999988876553333 2344556677799999
Q ss_pred HHHHcccHHHHHhcC
Q 040780 81 CLEELKEWEQCLSML 95 (95)
Q Consensus 81 c~~~l~~~~eal~~L 95 (95)
+....+.|.+||..|
T Consensus 87 ~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVL 101 (284)
T ss_pred HHHhhccccHHHHHH
Confidence 999999999999765
No 121
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.91 E-value=1.2 Score=35.64 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh---hhHHHHHHHHHHcccHHHHHhcC
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL---RFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~---~c~yL~A~c~~~l~~~~eal~~L 95 (95)
+++.-+-+|..|+..|+|..|+..+++. .+.+.+. ...|-.|-|+.++|+++||+..|
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778888999999999999999998774 2334444 24788999999999999998753
No 122
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.87 E-value=1.3 Score=21.24 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcCC
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTND 38 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~ 38 (95)
..+=.-+..+++|+.|+++.++.+.++|+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34456678899999999999999999875
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=89.84 E-value=1.3 Score=37.48 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=59.0
Q ss_pred CChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-c-cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 20 HLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-I-VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l-~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
-..+.+++-=|+.+..++ ||+.+|-+|.=|-..++...|...++..- + ...++.+-.|.|.|.-..+++.+|+++
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 345677888888888886 78888888888888888888888776531 2 245788888899999899999988875
No 124
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.78 E-value=1.2 Score=23.45 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQ 47 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~ 47 (95)
...+-+-+..+++++.|+=+-++++..+| +++..+.+|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 34566778999999999999999999997 5555555543
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=89.59 E-value=0.71 Score=32.12 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=43.5
Q ss_pred HHHHhCChhhHHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 15 DCVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
-+-.+.+|+.|+..-.....++ ++|.-.|..|+|++..|+...|...+..
T Consensus 80 ~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 80 VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 3445788999999999999998 4888999999999999999999887665
No 126
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=1.1 Score=36.03 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred HHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 28 FADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 28 ~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+.+++++.++ ..+-+|.-++.+|-.++|.||..+..+. .+..+|.....+.|+.++.+++.++|+-
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 3344444442 3445566677888899999998887664 4557788889999999999999999864
No 127
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=6.6 Score=29.89 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=57.3
Q ss_pred HHHhCChhhHHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhcCc----------------------------
Q 040780 16 CVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNASK---------------------------- 66 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~~---------------------------- 66 (95)
.+..+.+..|.=.-+-+.... .+.+-...||.||...|+...|..++..-+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 344566766666444444444 478899999999999999998888886421
Q ss_pred -------ccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 67 -------IVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 67 -------l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
.++.+...++-.|.-+...|+.++|++.|
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11224567888899988999999887643
No 128
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.80 E-value=0.76 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=20.2
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
++.+|-+|-+++..|+|..|.++.+
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678889999999999999988844
No 129
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.51 E-value=0.95 Score=35.58 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcCccccc---------ChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNASKIVLR---------DLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~---------~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
++--|...+.+.|+|+.|+..+++-.+..+ |..-.|=.|-|...+++|.||++++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f 187 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTF 187 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHH
Confidence 444567789999999999999987544332 2334788899999999999999763
No 130
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.19 E-value=3.4 Score=35.94 Aligned_cols=76 Identities=13% Similarity=0.280 Sum_probs=57.0
Q ss_pred HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc--cccC--hhhHHHHHHHHHHcccHHHH
Q 040780 17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI--VLRD--LRFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l--~~~~--~~c~yL~A~c~~~l~~~~ea 91 (95)
.+...|+.|+=.--+.+.+++ +|.-+-.||.=+|--|+|.++.++....-. ..++ ....|..|||..+.|+|++|
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 344567778888888888886 788888899999999999999888764311 1112 23468999999999999887
Q ss_pred H
Q 040780 92 L 92 (95)
Q Consensus 92 l 92 (95)
-
T Consensus 327 ~ 327 (1018)
T KOG2002|consen 327 F 327 (1018)
T ss_pred H
Confidence 4
No 131
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.14 E-value=1.2 Score=21.02 Aligned_cols=22 Identities=27% Similarity=0.147 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCCHHHHHHHHh
Q 040780 42 VYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 42 ~~llA~~l~~~~~~~~A~~ll~ 63 (95)
.+.+|..+...|++.+|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4555666666666666655543
No 132
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.10 E-value=5.3 Score=34.99 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~ 83 (95)
...+|.-+...+.++.|+-+-+++.... |+...--.+...|...|++.+|..+++. .++.+. .......-.+|.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~ 765 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence 4556666777777777777777765543 3444444566777778888888777763 222222 222222235666
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
+.+++++|..+
T Consensus 766 k~G~le~A~~l 776 (1060)
T PLN03218 766 RKDDADVGLDL 776 (1060)
T ss_pred HCCCHHHHHHH
Confidence 77777777654
No 133
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.04 E-value=5.1 Score=30.76 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCC--ch-hHHHHHHHHhhCCCHHHHHHHHhcCcc------cccChhhHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTND--PA-DVYMQAQALFLGRHYRRAFHLLNASKI------VLRDLRFRYLAA 79 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~--~~-~~~llA~~l~~~~~~~~A~~ll~~~~l------~~~~~~c~yL~A 79 (95)
|-.-|+.-...|.|.||.-||--+++++|. |- .++++=.--.+++||+--+.+.++... ...-|+..|=.|
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence 445567777899999999999999999974 33 445555556788999988888876432 123567888889
Q ss_pred HHHHHcccH
Q 040780 80 KCLEELKEW 88 (95)
Q Consensus 80 ~c~~~l~~~ 88 (95)
-+.+.+++-
T Consensus 186 LA~~~l~~~ 194 (360)
T PF04910_consen 186 LAYFRLEKE 194 (360)
T ss_pred HHHHHhcCc
Confidence 999988876
No 134
>PLN03077 Protein ECB2; Provisional
Probab=87.98 E-value=6.8 Score=32.75 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=32.0
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhc---CCchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALT---NDPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~---~~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
++.-+-..+.++.|.-+-+.+.... |+.+.-..+...+.+.|++.+|..++++-
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4455555666666666666655322 33344455566677777777777776653
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=87.98 E-value=3.6 Score=30.59 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
||.-......|.+|.++-|-+..-.+ ++.-+.-+|.|+...|+|..|..++..
T Consensus 173 wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 173 WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34433334445555555555433332 333444455555555555555555543
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=87.76 E-value=5.7 Score=29.50 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHh--hCC--CHHHHHHHHhcCcc-cccChhhHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALF--LGR--HYRRAFHLLNASKI-VLRDLRFRYLAAK 80 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~--~~~--~~~~A~~ll~~~~l-~~~~~~c~yL~A~ 80 (95)
++-+--.|+-+|..+++|-|.=--+++-.. .+.+-+..+|++.. ..| +++.|+.+.+.-.- ...++......|-
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQI-DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 445556788999999999987666665443 34466777777543 344 69999888765211 1245666777889
Q ss_pred HHHHcccHHHHHhcC
Q 040780 81 CLEELKEWEQCLSML 95 (95)
Q Consensus 81 c~~~l~~~~eal~~L 95 (95)
|...+|+|+||+.+|
T Consensus 210 ~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 210 CHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHCT-HHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999998764
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=87.73 E-value=2.2 Score=28.38 Aligned_cols=52 Identities=10% Similarity=-0.147 Sum_probs=41.0
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHh-------hCCCHHHHHHHHhc
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALF-------LGRHYRRAFHLLNA 64 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~-------~~~~~~~A~~ll~~ 64 (95)
-.-+...++++.|+...++++.+.+ .++....+|.++. ..|++..|...+++
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 3445668999999999999999986 5666777788888 88888877666654
No 138
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.66 E-value=0.98 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 40 ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 40 ~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+-+|.+|..+|+.|+|..|...++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~ 26 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDA 26 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4689999999999999999888775
No 139
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.63 E-value=9.4 Score=28.30 Aligned_cols=60 Identities=10% Similarity=-0.131 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHHHHHHh
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A~~ll~ 63 (95)
+..+.--++--.++.+|++..|.---||++..+|+...++ .+|..|-..|+..-|-+-.+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yr 93 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYR 93 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 4444455677789999999999999999999998655554 45888888887776655444
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.51 E-value=1.1 Score=36.13 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-------CchhHHHH--HHHHhhCCCHHHHHH---HHhcCcccccChhhHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-------DPADVYMQ--AQALFLGRHYRRAFH---LLNASKIVLRDLRFRYL 77 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-------~~~~~~ll--A~~l~~~~~~~~A~~---ll~~~~l~~~~~~c~yL 77 (95)
+..-.+.+..++.+- +|+-|..+...+ +.+=.-.| |+=+|..|+|+.|+. ++.+- ..++..+=|
T Consensus 425 Kq~Y~qaLs~~~~~r-LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i---aPS~~~~RL 500 (549)
T PF07079_consen 425 KQAYKQALSMHAIPR-LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI---APSPQAYRL 500 (549)
T ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---CCcHHHHHH
Confidence 333445555555543 455555555443 12212222 556899999999976 44442 358889999
Q ss_pred HHHHHHHcccHHHHHhcC
Q 040780 78 AAKCLEELKEWEQCLSML 95 (95)
Q Consensus 78 ~A~c~~~l~~~~eal~~L 95 (95)
.|-|++..++|+||.+.|
T Consensus 501 lGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 501 LGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 999999999999997653
No 141
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.77 E-value=1.1 Score=19.73 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 40 ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 40 ~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..+.+|.+++..|++..|...++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3467789999999999999887765
No 142
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=2.7 Score=33.09 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhh--------HHHHHHHHHHccc
Q 040780 17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRF--------RYLAAKCLEELKE 87 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c--------~yL~A~c~~~l~~ 87 (95)
++.+-|++|.-.|+|.+.+++ +.=+.+.+|.++-++|+++.+..+..+.. ....| -.=.|-|+++-.+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te---d~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE---DDWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc---cchhhhhHHHhhhhHHHHHhhhcccc
Confidence 467889999999999999997 56689999999999999999999998752 22222 2335778888888
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
|+.|+.+
T Consensus 263 ye~aleI 269 (491)
T KOG2610|consen 263 YEKALEI 269 (491)
T ss_pred hhHHHHH
Confidence 8888764
No 143
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=4.8 Score=32.22 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCC--chhHHHH---HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTND--PADVYMQ---AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~--~~~~~ll---A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-=.+.-.+|.|..|--.---.+.++|+ ..++.+| |.+..+.|+...|+.-.+.. .++..-+......|+|...+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 334566778888877666666677762 2233333 67888899999998877664 34455566777889999999
Q ss_pred ccHHHHHh
Q 040780 86 KEWEQCLS 93 (95)
Q Consensus 86 ~~~~eal~ 93 (95)
++|++|+.
T Consensus 335 e~~e~AV~ 342 (486)
T KOG0550|consen 335 EKWEEAVE 342 (486)
T ss_pred HHHHHHHH
Confidence 99999974
No 144
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.47 E-value=2.3 Score=28.74 Aligned_cols=64 Identities=25% Similarity=0.158 Sum_probs=46.8
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780 26 IFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 26 iF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
.--|.+++.+-++.+.|.--|+-.+..|+|.-|.++++.- ...+.+...+.|.|.++.+++.-.
T Consensus 57 ~~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3457778888888899999999999999999998888752 123456778888898888876543
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=86.17 E-value=2.5 Score=34.04 Aligned_cols=47 Identities=15% Similarity=-0.015 Sum_probs=25.7
Q ss_pred HhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 18 SKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
..++++.|.-..+|..++.++...-.++|.++...|++.+|....++
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555555555555555544555555555555555555555543
No 146
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.75 E-value=3.5 Score=32.78 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
...+||.||.++|++.-|..+.-+..-........=|.|.-|++.++|
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999887654321111222334567777776664
No 147
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=85.16 E-value=7.8 Score=31.40 Aligned_cols=88 Identities=10% Similarity=-0.000 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhh--------cCCchhHH-HHHHHHhhCCCHHHHHHHHhcCcc------ccc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAAL--------TNDPADVY-MQAQALFLGRHYRRAFHLLNASKI------VLR 70 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~--------~~~~~~~~-llA~~l~~~~~~~~A~~ll~~~~l------~~~ 70 (95)
..-++.+...+-.+++|+.|+=+....+-. .+...+.- .+|..|...++|..|+.+.++.-- =..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666899999999999999999998877 22222333 489999999999999999876310 023
Q ss_pred Chhh--HHH-HHHHHHHcccHHHHHh
Q 040780 71 DLRF--RYL-AAKCLEELKEWEQCLS 93 (95)
Q Consensus 71 ~~~c--~yL-~A~c~~~l~~~~eal~ 93 (95)
|+.- .+. .|..+++.|||.||..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEE 304 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHH
Confidence 3322 111 2556689999999864
No 148
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.16 E-value=1.6 Score=21.23 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
..+.+|.+++..|+|..|+...++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHH
Confidence 456778888888888888887765
No 149
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=3 Score=34.12 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHhCChhhHHHHHHHHhhhcCCchhHHH---HHHHHhhCCCHHHHHHHHhcCcc-cccChhhHHHHHHHHHHcccHHHHH
Q 040780 17 VSKHLYSSAIFFADKVAALTNDPADVYM---QAQALFLGRHYRRAFHLLNASKI-VLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~~~~~~~l---lA~~l~~~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
+-.++|+.|+==-||..+++| +++|- +|-.+|+.+++..+++..+.... .++.+.|--+||..+.+.++|+.|+
T Consensus 405 flL~q~e~A~aDF~Kai~L~p--e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDP--ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 445566666666666666654 33333 34467777777777776654321 2567778888999999988888886
Q ss_pred h
Q 040780 93 S 93 (95)
Q Consensus 93 ~ 93 (95)
.
T Consensus 483 k 483 (606)
T KOG0547|consen 483 K 483 (606)
T ss_pred H
Confidence 4
No 150
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.32 E-value=3.1 Score=33.54 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=53.3
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC----CchhHHHH--------HHHHhhCCCHHHHHHHHhcC-cccccChhhHHH-HHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN----DPADVYMQ--------AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYL-AAK 80 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~ll--------A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL-~A~ 80 (95)
....-+++.+|+-+++|-.++++ +++|++-. ..||.+.++++-|..=..+. .+.+.+ .+-.| -|-
T Consensus 192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~-frnHLrqAa 270 (569)
T PF15015_consen 192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY-FRNHLRQAA 270 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch-hhHHHHHHH
Confidence 34566889999999999988883 56677655 56999999999997655432 221222 22222 355
Q ss_pred HHHHcccHHHHHh
Q 040780 81 CLEELKEWEQCLS 93 (95)
Q Consensus 81 c~~~l~~~~eal~ 93 (95)
|-..+.+|.||-.
T Consensus 271 vfR~LeRy~eAar 283 (569)
T PF15015_consen 271 VFRRLERYSEAAR 283 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 6667899998753
No 151
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=84.21 E-value=12 Score=30.56 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=28.3
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
-.+..+|...|++..|..+++.-. .++.........++.+.|++++|+.+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 344556666666666666666532 23333344445555666777776654
No 152
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.09 E-value=12 Score=27.26 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhC-ChhhHHHHHHHHhhhc----C----Cch-------hHHHHHHHHhhCCCHHHH---HHHHhc
Q 040780 4 EEIEKLRGVVRDCVSKH-LYSSAIFFADKVAALT----N----DPA-------DVYMQAQALFLGRHYRRA---FHLLNA 64 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~-~y~~AiF~Aekl~a~~----~----~~~-------~~~llA~~l~~~~~~~~A---~~ll~~ 64 (95)
++...+-..-.+.+... .|++|+||=++.+.+. + +++ -+..+|.++...+.+... ..+++-
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44555666667778888 9999999999998883 1 222 566789999998887644 333321
Q ss_pred C-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 65 S-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 65 ~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
- +..+.++...+|.-+.+.+....+++.++
T Consensus 113 l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 113 LESEYGNKPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHhCCCCcHHHHHHHHHHhccCChhHHHHH
Confidence 1 11245677777888888885555555443
No 153
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=84.02 E-value=9 Score=24.63 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCC-----------------------chhHHHHHHHHhhCCCHHHHHHHHhcC-cccc
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTND-----------------------PADVYMQAQALFLGRHYRRAFHLLNAS-KIVL 69 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~-----------------------~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~ 69 (95)
......+..+.++-..++++++-++ .+.+-.++..+...|++..|..++++. ..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP 93 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP 93 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3446677889999999998888731 114455677889999999999988764 2334
Q ss_pred cChhhHHHHHHHHHHcccHHHHHhc
Q 040780 70 RDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 70 ~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+........+++...|+..+|+.+
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~ 118 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRV 118 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 5667778889999999999999864
No 154
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.88 E-value=14 Score=32.44 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhcC---cccccChhhHHHHHHHHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNAS---KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~~---~l~~~~~~c~yL~A~c~~~ 84 (95)
..+|.-+...+.++.|+.+-+++.... |+....-.+...+...|++..|..+++.- +. ..+.........+|.+
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh
Confidence 344555555666666666666655443 22223334455566666666666555431 11 1122233333445555
Q ss_pred cccHHHHHh
Q 040780 85 LKEWEQCLS 93 (95)
Q Consensus 85 l~~~~eal~ 93 (95)
.|++++|+.
T Consensus 697 ~G~~eeA~~ 705 (1060)
T PLN03218 697 AKNWKKALE 705 (1060)
T ss_pred CCCHHHHHH
Confidence 566665554
No 155
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=83.60 E-value=12 Score=32.01 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHH------------------HHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFF------------------ADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~------------------Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
|.++.++..+++.-....+++.|||= -|+..-.+ +..+..+.+|.|+-..|+-..|..+++
T Consensus 302 d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 302 DAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 55667777778888888888888771 12211111 357899999999999999999999998
Q ss_pred cCc-cc--ccChhhHHHHHHHHH-HcccHHHHHh
Q 040780 64 ASK-IV--LRDLRFRYLAAKCLE-ELKEWEQCLS 93 (95)
Q Consensus 64 ~~~-l~--~~~~~c~yL~A~c~~-~l~~~~eal~ 93 (95)
+.- .. +.++.-..++++-|+ .++..+||++
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld 415 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD 415 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence 752 21 222333344455444 6999999986
No 156
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.44 E-value=2.4 Score=21.39 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCHHHHHHHHhc
Q 040780 42 VYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 42 ~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
...+|..+...|+|.+|+.+.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45689999999999999988876
No 157
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=83.26 E-value=11 Score=24.88 Aligned_cols=87 Identities=18% Similarity=0.027 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC 81 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c 81 (95)
-++...|-++---....|..+.|.-.||=+-..++..+.|-+. ..++...|+|.+|..+-.. ...|..--++|.|
T Consensus 3 ~~l~~lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~----~~~pdL~p~~AL~ 78 (116)
T PF09477_consen 3 RELRRLLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQC----HCYPDLEPWAALC 78 (116)
T ss_dssp HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTT----S--GGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhccc----CCCccHHHHHHHH
Confidence 3455566666666778899999999999998888766665554 8899999999999333222 3455666688999
Q ss_pred HHHcccHHHHHh
Q 040780 82 LEELKEWEQCLS 93 (95)
Q Consensus 82 ~~~l~~~~eal~ 93 (95)
-.++|--.++..
T Consensus 79 a~klGL~~~~e~ 90 (116)
T PF09477_consen 79 AWKLGLASALES 90 (116)
T ss_dssp HHHCT-HHHHHH
T ss_pred HHhhccHHHHHH
Confidence 999887776654
No 158
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=83.09 E-value=5.7 Score=32.44 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
...++.-+-.+++++.|...++++..+.| +...-..++..|...|++..|..+.+.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 55667777789999999999999988886 455666778999999999999888753
No 159
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.01 E-value=12 Score=30.63 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH---HHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ---AQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKC 81 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll---A~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c 81 (95)
.+.-|.-=.++...+.|.+|+-.-++.+..+ |+|.-++ |.||...|++.+|+.=.+... +++..+..-.=.|.|
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 4455566678888999999999999955554 4444444 779999999999988655432 333444444445888
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+..+++|+.|+++
T Consensus 436 l~~mk~ydkAlea 448 (539)
T KOG0548|consen 436 LRAMKEYDKALEA 448 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988764
No 160
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.38 E-value=11 Score=24.61 Aligned_cols=81 Identities=17% Similarity=0.021 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~ 86 (95)
.|-++.-----+|..+.|.-.||=+.......+-|-+. ..++...|+|..|..+.+.. ..|..--++|.|-.++|
T Consensus 7 lLAE~AL~gTG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlG 82 (115)
T TIGR02508 7 LLAEIALIGTGHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLG 82 (115)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhc
Confidence 34444444456788899999999987776555655554 67889999999999998875 25556667899988888
Q ss_pred cHHHHH
Q 040780 87 EWEQCL 92 (95)
Q Consensus 87 ~~~eal 92 (95)
.-.+..
T Consensus 83 l~s~l~ 88 (115)
T TIGR02508 83 LGSALE 88 (115)
T ss_pred cHHHHH
Confidence 765543
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.32 E-value=3.2 Score=31.54 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=39.7
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+...++|++|+==||+.+.++| ....--.++.+++..|+|..|+...++.
T Consensus 125 y~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 125 YSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred HHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 4566777777777777777776 4557778899999999999999986654
No 162
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.04 E-value=12 Score=28.21 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVY 43 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~ 43 (95)
.|.++..+..+.-+.++|..++|.---||..-.. .+|++..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Al 130 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDAL 130 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHH
Confidence 5778888999999999999999999999976655 3566443
No 163
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.46 E-value=2.3 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHcccHHHHHh
Q 040780 73 RFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~ 93 (95)
.|.|..|-.++++|+|++|..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~ 22 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARR 22 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHH
Confidence 488999999999999999975
No 164
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.43 E-value=3.6 Score=19.78 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
..+.+|.++...|++..|...+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457788888888888888887765
No 165
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.21 E-value=3.2 Score=20.57 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+...+|.+|...|++.+|..+.++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHH
Confidence 566789999999999999998876
No 166
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=80.86 E-value=21 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=25.6
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRA 58 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A 58 (95)
.+...+.+++|..|+=..-|+..++| +.+-.-.+|-+|-+.|+...|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHH
Confidence 44555556666666666666666654 444444455555555554444
No 167
>PLN03077 Protein ECB2; Provisional
Probab=80.69 E-value=20 Score=29.96 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~c~ 82 (95)
...+|.-+..+++.+.|+-+-+++.... |+....-.+-..+...|...+|..+++. +++. .+..........+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l 635 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 4567778888899999999888887654 3333333445667888999999888764 3322 2223334456677
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
.+.|+++||++.
T Consensus 636 ~r~G~~~eA~~~ 647 (857)
T PLN03077 636 GRAGKLTEAYNF 647 (857)
T ss_pred HhCCCHHHHHHH
Confidence 788999998764
No 168
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.38 E-value=3.7 Score=25.35 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=24.9
Q ss_pred HHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHH
Q 040780 31 KVAALTN-DPADVYMQAQALFLGRHYRRAFHLL 62 (95)
Q Consensus 31 kl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll 62 (95)
+.++.+| +++..|-+|..+...|++..|+..+
T Consensus 13 ~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~L 45 (90)
T PF14561_consen 13 AALAANPDDLDARYALADALLAAGDYEEALDQL 45 (90)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455565 6789999999999999999998855
No 169
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=3.3 Score=32.57 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-----Cch-----------hHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-----DPA-----------DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL 72 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~~-----------~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~ 72 (95)
|.-=..+...+.|..|+---||++..-+ +++ .-.=+|-|+...++|..|+....+. .+.+.+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 3333456677888888888888555432 111 2233688999999999999887765 2345678
Q ss_pred hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~ 94 (95)
...|=-|+++..+++|+.|++.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~d 313 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDD 313 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHH
Confidence 8888899999999999999864
No 170
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=79.70 E-value=5.5 Score=31.56 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=22.5
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCCch--hHHHHHHHHhhCCCH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTNDPA--DVYMQAQALFLGRHY 55 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~--~~~llA~~l~~~~~~ 55 (95)
+.|.++-+++|+.|....+++...++-.. ..|..|-|+...|+.
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 34445555555555555555555554222 333445555555555
No 171
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=78.34 E-value=7.4 Score=19.98 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhh
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAL 35 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~ 35 (95)
++.+..|+.-...+.....|+.|..+=|++-.+
T Consensus 1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l 33 (36)
T PF02151_consen 1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKAL 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 467888999999999999999999999998765
No 172
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=78.23 E-value=19 Score=31.18 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=48.8
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+-..+++.+.|+.|+-+-+|++-+.| +.+....||..+...|++..|...+.+
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 344567899999999999999999997 778889999999999999999999988
No 173
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.68 E-value=6.1 Score=27.08 Aligned_cols=46 Identities=22% Similarity=0.139 Sum_probs=39.5
Q ss_pred CChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 20 HLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
..-+..+=|+++.+.-.|+++...-++..+..+|+..+|-.+....
T Consensus 125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455677899999988899888888999999999999998888763
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.62 E-value=6.3 Score=30.75 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=32.2
Q ss_pred hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
-++|+.|+-=-.-....++ +|--.|-+|.|+|+.|||..|...+.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 3566666644444445555 67788889999999999999987764
No 175
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.99 E-value=14 Score=25.39 Aligned_cols=58 Identities=21% Similarity=0.139 Sum_probs=36.1
Q ss_pred cCCchhHHHHHHHHhhCCCHHHH---HHHHhcC---cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 36 TNDPADVYMQAQALFLGRHYRRA---FHLLNAS---KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 36 ~~~~~~~~llA~~l~~~~~~~~A---~~ll~~~---~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+.+.++.|-||-|+.++.+-... +.++..- ......-.|.|..|-.++++|+|+.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~ 92 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR 92 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH
Confidence 34666778888888877765543 3333321 0112344677888888888888887764
No 176
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=75.78 E-value=31 Score=29.07 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH-
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC- 81 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c- 81 (95)
+.+..+--+++++--.++|+-|.-|-|..+.-+|+.-..| ..|..+-.+|.+..|..++.... .-...=|||.++|
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~--elD~aDR~INsKcA 446 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ--ELDTADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH--hccchhHHHHHHHH
Confidence 3466777888999999999999999999999998655555 66999999999999999998753 2233456676555
Q ss_pred --HHHcccHHHHHhc
Q 040780 82 --LEELKEWEQCLSM 94 (95)
Q Consensus 82 --~~~l~~~~eal~~ 94 (95)
.+..++.+||..+
T Consensus 447 KYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEV 461 (700)
T ss_pred HHHHHccccHHHHHH
Confidence 5678888888765
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=75.76 E-value=17 Score=27.50 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
-.+-+...-..|.-.-++++.+++ ++.+.++||..+|..|+|..|....+.
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 334467777778888899999996 899999999999999999999876653
No 178
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.65 E-value=21 Score=28.96 Aligned_cols=89 Identities=10% Similarity=0.058 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-----Cch----hHHHHHHHHhhCCCHHHHHHHHhcC--------ccc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-----DPA----DVYMQAQALFLGRHYRRAFHLLNAS--------KIV 68 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~~----~~~llA~~l~~~~~~~~A~~ll~~~--------~l~ 68 (95)
...|..+-.-+...+.|+.|.+++|++..+.. +++ -+--++..+-..++|..|..++++. +..
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 34455666667889999999999999988772 222 4445678888999999998888753 111
Q ss_pred c-cChhhHHHHHHHHHHcccHHHHHhc
Q 040780 69 L-RDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 69 ~-~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
. .-.+.+-=.|.+++..|+|+||++.
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 1 1122233349999999999999864
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=75.64 E-value=11 Score=28.01 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch---hHHHHHHHHhhC
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA---DVYMQAQALFLG 52 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~---~~~llA~~l~~~ 52 (95)
+-.++.-+...++|+.|++.+||-..+.| +|+ -.|+.+.++|..
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 45677888899999999999999999997 333 567889998754
No 180
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=75.40 E-value=19 Score=31.65 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHh-cCcccccC-hhhHHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLN-ASKIVLRD-LRFRYLAAKCL 82 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~-~~~l~~~~-~~c~yL~A~c~ 82 (95)
|--+-.+.--.++|..+.=+|+-+..-+. -.++-||+|.++...|+|..|...-. +.+....+ ..-.+-.|+-.
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 34455566778899999999998777662 46799999999999999999977442 22222233 44455567778
Q ss_pred HHcccHHHHH
Q 040780 83 EELKEWEQCL 92 (95)
Q Consensus 83 ~~l~~~~eal 92 (95)
+..+.+++++
T Consensus 353 i~~~dle~s~ 362 (1018)
T KOG2002|consen 353 IKRGDLEESK 362 (1018)
T ss_pred HHhchHHHHH
Confidence 8888877765
No 181
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=75.17 E-value=29 Score=25.89 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=54.3
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCccccc-ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLR-DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~-~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+..+.|-+---+++.+.+ +|.-+-=+|-.++.+|++..|..++.+..+... ....+-=.|...-..+++++|.++
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 34555666666666666664 455666788899999999999999876543222 455555567777789999998875
No 182
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=74.74 E-value=4.8 Score=21.91 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT 36 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~ 36 (95)
-+..|.+.+..|+++.|+-|++.....-
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPL 31 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHH
Confidence 3567788899999999999999876544
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=74.34 E-value=31 Score=25.22 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=54.3
Q ss_pred HHHHhCChhhHHHHHHHHhh-hc-CCchhHHHHHHHHhhCCCHHHHHHHHhcCc---ccccChhhHHHHHHHHHHcccHH
Q 040780 15 DCVSKHLYSSAIFFADKVAA-LT-NDPADVYMQAQALFLGRHYRRAFHLLNASK---IVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a-~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~~---l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
...+.|.|..|.=.-+..++ +. +++.-+.-+|+..|..+++..|...+++-. -..+++.--.++|+.+-..|++.
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 34566777776654444322 22 245555667889999999999988887532 23356666788899999999998
Q ss_pred HHHhc
Q 040780 90 QCLSM 94 (95)
Q Consensus 90 eal~~ 94 (95)
+|+..
T Consensus 178 ~Aesa 182 (251)
T COG4700 178 DAESA 182 (251)
T ss_pred hHHHH
Confidence 87754
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=74.19 E-value=22 Score=28.64 Aligned_cols=72 Identities=15% Similarity=0.031 Sum_probs=50.3
Q ss_pred hhHHHHHHHHhhhc--C-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 23 SSAIFFADKVAALT--N-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 23 ~~AiF~Aekl~a~~--~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..|.=.+++..++. + ++..-.-+|......|++.+|...+++.--...+.....+.|+++...|+++||++.
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444555655542 2 333333467788889999999999987532223566778889999999999999864
No 185
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=74.16 E-value=8 Score=31.55 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 43 YMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
.-+|.|....|+.++|+...+. .+ ...+.+.++....|+++++.|.|+..+|
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4578999999999999876543 22 2357789999999999999999988764
No 186
>PRK04841 transcriptional regulator MalT; Provisional
Probab=73.75 E-value=21 Score=29.69 Aligned_cols=79 Identities=9% Similarity=-0.033 Sum_probs=55.7
Q ss_pred HHHhCChhhHHHHHHHHhhhcCCc------hhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccChhhHHHHHHHH
Q 040780 16 CVSKHLYSSAIFFADKVAALTNDP------ADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRDLRFRYLAAKCL 82 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~~~------~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~~~c~yL~A~c~ 82 (95)
+...+.++.|.-++++.+...+.. .....+|.++...|++.+|...+...- ............|..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 457889999999999988754321 134667889999999999988776431 1011123445568888
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
+..|++++|+..
T Consensus 542 ~~~G~~~~A~~~ 553 (903)
T PRK04841 542 FAQGFLQAAYET 553 (903)
T ss_pred HHCCCHHHHHHH
Confidence 899999998753
No 187
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.12 E-value=3.8 Score=32.94 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHH-HHhcCcccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFH-LLNASKIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~-ll~~~~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..--.+.+.-.-|+.|+-++-|+..++++-.-.|-. |+.+...+.|+.|.+ .++--.+.++-..|.|.-|..|-+++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3344445566778888888888888887643322222 467888888888877 44444455667788888888888888
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++.+|...
T Consensus 87 ~~~~A~~~ 94 (476)
T KOG0376|consen 87 EFKKALLD 94 (476)
T ss_pred HHHHHHHH
Confidence 88888754
No 188
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=5.5 Score=32.37 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~ 86 (95)
++|++|+++|-..+|.||.+.+++. ++....||.-.|.+-.+
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~----~s~k~~FL~lysk~La~ 121 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNC----KSKKSAFLRLYSKYLAG 121 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhc----chHHHHHHHHHHHHHhh
Confidence 8999999999999999999999984 44555566566655433
No 189
>PRK10941 hypothetical protein; Provisional
Probab=72.95 E-value=22 Score=26.40 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
++.+-.-++..+.++.|+=.+|+++.+.| +|..+-=-|..|++.|.++.|..=++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55666677999999999999999999997 555555579999999999999875543
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=72.93 E-value=33 Score=24.88 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHhhhc---CCch----hHHHHHHHHhhC-CCHHHHHHHHhcC-------cccccChhhHHHHHHHHHHc
Q 040780 21 LYSSAIFFADKVAALT---NDPA----DVYMQAQALFLG-RHYRRAFHLLNAS-------KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~---~~~~----~~~llA~~l~~~-~~~~~A~~ll~~~-------~l~~~~~~c~yL~A~c~~~l 85 (95)
+++.|+-+-++++.+- +++. -..-+|..|-.. |++..|+...++. +-......|.-=.|..+.++
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 7777777777766554 3222 344556667666 7777777666542 21122345555667778888
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
++|++|+..
T Consensus 169 ~~y~~A~~~ 177 (282)
T PF14938_consen 169 GRYEEAIEI 177 (282)
T ss_dssp T-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 888888764
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.54 E-value=39 Score=25.55 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH--HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ--AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll--A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+.+-|..++..++.+ -|+|+....+=|+--||. -.+|..+|++.+-..+.++. ++|-.---|..+|++.|
T Consensus 180 l~~Ti~~li~~~~~k----~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~sk----KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEK----QAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSK----KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHH----HHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCC----CCCCChHHHHHHHHHCC
Confidence 456677777788765 478887777655544444 66888899998888877652 45555566777888888
Q ss_pred cHHHHHh
Q 040780 87 EWEQCLS 93 (95)
Q Consensus 87 ~~~eal~ 93 (95)
..+||..
T Consensus 252 ~~~eA~~ 258 (319)
T PF04840_consen 252 NKKEASK 258 (319)
T ss_pred CHHHHHH
Confidence 7777753
No 192
>PRK11906 transcriptional regulator; Provisional
Probab=71.90 E-value=24 Score=28.44 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=40.3
Q ss_pred hCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 19 KHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+.++.|+=|-|+...++|+ ....|..|..++.+|+..+|...+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34599999999999999984 56777789999999999999999887
No 193
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=71.24 E-value=36 Score=27.86 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCccc-ccChhhHHHHHHHHHHcccHHHHH
Q 040780 20 HLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASKIV-LRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~l~-~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
.++-=|+|+--|...+-|+ +.=.-.||+||-..++...|+.-.++.-+. ...-...+=.|+-+-++++.+||.
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 4455566666666666553 333334566777777777666666553211 111122333456666666666664
No 194
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.63 E-value=29 Score=28.67 Aligned_cols=80 Identities=11% Similarity=0.011 Sum_probs=55.1
Q ss_pred HHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhcCcccccC--------hhhHHHHHHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNASKIVLRD--------LRFRYLAAKCL 82 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~--------~~c~yL~A~c~ 82 (95)
+|..-+.|++|.|-.--...++.+.+ -.--+|.+|.+.|+-..-+.+++.-+-..++ ....|+.|.-.
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 45667889999987766665554322 2223577999999888888888764422232 23578888888
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
++.++++||-..
T Consensus 456 f~qn~lnEaK~~ 467 (629)
T KOG2300|consen 456 FKQNDLNEAKRF 467 (629)
T ss_pred HHhccHHHHHHH
Confidence 899999998653
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=37 Score=25.80 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=45.3
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcc-cccChhhHHHHHHHHHHccc
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKI-VLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~c~~~l~~ 87 (95)
|+=.+..+..|.|.=--.++..++ +...+-.||+++.. .++++.|+.+.+.-.- ....+...---|-|+..+++
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 444445555555544444443332 22344457777653 4567888877765321 12233333344667788899
Q ss_pred HHHHHhcC
Q 040780 88 WEQCLSML 95 (95)
Q Consensus 88 ~~eal~~L 95 (95)
|+||..+|
T Consensus 223 ~eeAe~lL 230 (299)
T KOG3081|consen 223 YEEAESLL 230 (299)
T ss_pred HHHHHHHH
Confidence 99988654
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=70.03 E-value=26 Score=30.56 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=51.8
Q ss_pred hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
...|.-..+++.++.....+...++.+|.||-..|++.+|+...++. .++..++.+.-=+|..+.+. +.++|+.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 33445555666665554445579999999999999999999988774 24456676655556666666 7777664
No 197
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.75 E-value=13 Score=24.95 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGR 53 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~ 53 (95)
.+++-+..+..++.+.|.-|+-++|.++..+| +.+.-.+.|.+|-..|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 35666777889999999999999999999997 6778888888887665
No 198
>PRK04841 transcriptional regulator MalT; Provisional
Probab=68.45 E-value=48 Score=27.60 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=54.1
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC---Cc----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccC---hhhHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN---DP----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRD---LRFRYL 77 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~---~~----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~---~~c~yL 77 (95)
-....+.++.|.-+.++...... ++ .....+|.+++..|++..|...+++. +. ..+ ......
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~ 578 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQLPMHEFLLRI 578 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHH
Confidence 34668899999999999887653 21 24456788999999999998876542 11 011 122345
Q ss_pred HHHHHHHcccHHHHHhc
Q 040780 78 AAKCLEELKEWEQCLSM 94 (95)
Q Consensus 78 ~A~c~~~l~~~~eal~~ 94 (95)
.|...+..|++++|+..
T Consensus 579 la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 579 RAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 57788888999988653
No 199
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.72 E-value=20 Score=27.22 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=42.5
Q ss_pred CchhHHHH--HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 38 DPADVYMQ--AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 38 ~~~~~~ll--A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+++..+ |..+...|++..|...+++ ..++.+.-|--+|++++.+.+-|++.
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434444 7789999999999999998 35788999999999999998877654
No 200
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=67.05 E-value=21 Score=28.28 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=49.7
Q ss_pred HHhCChhhHHHHHHHHhhhc---C--CchhHHHHHHHHhhCCCHHHHHHHHhcCc--ccccChhhHHHHHHHHHHcccH
Q 040780 17 VSKHLYSSAIFFADKVAALT---N--DPADVYMQAQALFLGRHYRRAFHLLNASK--IVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~---~--~~~~~~llA~~l~~~~~~~~A~~ll~~~~--l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
..+++.+.|+=+=++..... + ..--.|-+|-|+...++|.+|......-. ..-.+....|+.|-|+..+++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 44566677776666654321 1 23367778999999999999987654311 0123566899999999999988
No 201
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.42 E-value=73 Score=25.92 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch-------hHHHHHHHHhhCCCHHHHHHHHhcC-------ccc
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA-------DVYMQAQALFLGRHYRRAFHLLNAS-------KIV 68 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~-------~~~llA~~l~~~~~~~~A~~ll~~~-------~l~ 68 (95)
.|...+||=..--.-+..+++-|.-.-+|...++..++ .-++++.+++..|... |...+++. +..
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 34444555544455578899999999999988884322 3468899999999887 88888763 111
Q ss_pred ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 69 LRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 69 ~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.-...|+++-+.-....+++.-|++.
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~ 161 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALEN 161 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 12345677644444444677766654
No 202
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.78 E-value=14 Score=30.49 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 46 AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 46 A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
|-.+--..+.++|+..-++. .|.+.-.+.||=.|-||..+|-|+||+.-
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 44444444444444433332 23334566899999999999999999753
No 203
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.64 E-value=20 Score=28.34 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=44.7
Q ss_pred chhHHHH---HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 39 PADVYMQ---AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 39 ~~~~~ll---A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
-.|-||. |.||++.|-|.+|-.-+++.---.+++.-.-+.++.+-..++..-|+.+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~ 278 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLV 278 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHH
Confidence 4477775 8899999999999998887633346788888889999999988877754
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=61.15 E-value=62 Score=25.67 Aligned_cols=67 Identities=18% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 27 FFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 27 F~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
=.+|+-....| +|.-.+.||.-++.+++|..|...++..--...+..-.-..|..+-++++..+|.+
T Consensus 315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 34455555554 45566677888888888888877776532112333334456777777777766654
No 205
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=60.84 E-value=35 Score=22.26 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYR 56 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~ 56 (95)
.++++..|++-.|+-+-|.+.+-.++.++.+. .+...|+..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~---lh~~QG~if 43 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWL---LHRLQGTIF 43 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHH---HHHHHhHHH
Confidence 46788899999999999999988876555431 244445443
No 206
>PLN02789 farnesyltranstransferase
Probab=60.65 E-value=70 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHH-HHHHHhhCC-CHHHHHHHHhc
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYM-QAQALFLGR-HYRRAFHLLNA 64 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~l-lA~~l~~~~-~~~~A~~ll~~ 64 (95)
..+.+|.++ .....++.|+..-++++.++|+...++. .+.++...| .+..++..+.+
T Consensus 39 a~~~~ra~l---~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 39 AMDYFRAVY---ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHH---HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 344555553 2466888888888888888876555544 367777777 56788777653
No 207
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=60.14 E-value=5.9 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHcccHHHHHhcC
Q 040780 73 RFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~L 95 (95)
.-.|++|+++++.++|+-|..+|
T Consensus 75 ~d~yllAksyFD~kEy~RaA~~L 97 (142)
T PF04049_consen 75 YDKYLLAKSYFDCKEYDRAAHVL 97 (142)
T ss_pred HHHHHHHHHHhchhHHHHHHHHH
Confidence 47899999999999999887654
No 208
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=59.24 E-value=44 Score=26.67 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
++=...+..+|+.+|+----.++..+| +--.+|.=|++|...|+-+.|+.=+.+- .+.+.-.+.|.=-|..+++.|++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 445566778899999877777777765 4457888899999999999887655442 22234556677778889999999
Q ss_pred HHHHh
Q 040780 89 EQCLS 93 (95)
Q Consensus 89 ~eal~ 93 (95)
++|+.
T Consensus 123 e~A~~ 127 (504)
T KOG0624|consen 123 EQAEA 127 (504)
T ss_pred HHHHH
Confidence 99874
No 209
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.05 E-value=38 Score=25.15 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+..+...++..++.+.|.-+=.|.+..+| .|...--+|.-+|..|+|-+|...++.
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 344555666666777777777777666665 455666667777777777777666654
No 210
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.34 E-value=14 Score=25.35 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHhh-hcC--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 22 YSSAIFFADKVAA-LTN--DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 22 y~~AiF~Aekl~a-~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+..|-.=|.++. .+| .-+-+|.||-.+|+.|||.++..+++.
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 3445555666665 333 566899999999999999999998864
No 211
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=56.62 E-value=87 Score=27.03 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHhhhcCCchhHHHHHH-HHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 20 HLYSSAIFFADKVAALTNDPADVYMQAQ-ALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~~~~~~~llA~-~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
+....|.-.-+.++.-.|+.+++++-|- -.+.+.|+.||-.++.+..........-+-.+.-..-+++.+||+..|
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 4455566666667777777788877764 678899999999888876544444444444555556677777777643
No 212
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=56.41 E-value=22 Score=17.01 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhCChhhHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIF 27 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF 27 (95)
+.|..+|++++...-|..+..
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~ 21 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAK 21 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHH
Confidence 457889999999988887654
No 213
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.84 E-value=8.3 Score=30.59 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA 40 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~ 40 (95)
+--||..+..+....+|.+|..+|.||+.+.|+++
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 44688899999999999999999999999987664
No 214
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=55.35 E-value=77 Score=22.89 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-----CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-----DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
++..+-.-....-+...++++.|...-.++....+ .|.-.+..|+.+...|+...|+..++.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556667778889999999999999999887652 466777789999999999999998854
No 215
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.24 E-value=78 Score=22.91 Aligned_cols=72 Identities=17% Similarity=0.054 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhhcC-Cch---hHHHHHHHHhhCCCHHHHHHHHhcCcccccC----hhhHHHHHHHHHHcccHHHHHhcC
Q 040780 24 SAIFFADKVAALTN-DPA---DVYMQAQALFLGRHYRRAFHLLNASKIVLRD----LRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 24 ~AiF~Aekl~a~~~-~~~---~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~----~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
+.+--+|++...++ +.- ...-+|...+-.|++..|..-|+..--.++. .-...=.|+..+..|++++|+..|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56666777766663 322 4445677777777777777666532100111 112222367777777777777654
No 216
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=54.85 E-value=28 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcCccc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNASKIV 68 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~~l~ 68 (95)
=-.|.+.|..|+|++-|++|+++.+.
T Consensus 103 kArA~vafH~gnf~eLY~iLE~h~Fs 128 (304)
T KOG0775|consen 103 KARAVVAFHSGNFRELYHILENHKFS 128 (304)
T ss_pred HHHHHHHHhcccHHHHHHHHHhccCC
Confidence 34577999999999999999998654
No 217
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.74 E-value=46 Score=20.14 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC---C-c------hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN---D-P------ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~---~-~------~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.++..+.|.+|+=--.+.+...+ + . ..+..+|..+...|++..|+..++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45778899999888888877763 1 1 2456678899999999999998875
No 218
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=53.81 E-value=23 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.7
Q ss_pred HHHHHHhCChh-hHHHHHHHHhhh
Q 040780 13 VRDCVSKHLYS-SAIFFADKVAAL 35 (95)
Q Consensus 13 v~~~l~~~~y~-~AiF~Aekl~a~ 35 (95)
|+..|..|.|. ++--.||+++..
T Consensus 71 ik~aI~~G~Y~vd~~~iA~~ml~~ 94 (95)
T TIGR03824 71 IKAAIANGSYKVDAEKIADKLLDF 94 (95)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHhc
Confidence 45566799999 999999998753
No 219
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.24 E-value=53 Score=23.54 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 42 VYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 42 ~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.+.+|.-|+..|+|..|..+++.. |-..-...+.-...+|...+|+.++.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 456789999999999999988763 1111233466677888889998887664
No 220
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=43 Score=27.51 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=49.2
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCCchhHHHH---HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTNDPADVYMQ---AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll---A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
.-....+.|++|+-.--....++|.. --++ .-|+--.|+|..|+.=-.+. .+.+.-+....=.|-.+.-+|+|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~n--hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTN--HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCc--cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 34556788888888887777777652 2222 34777788888887644332 233333334344566777788888
Q ss_pred HHHh
Q 040780 90 QCLS 93 (95)
Q Consensus 90 eal~ 93 (95)
||+.
T Consensus 88 eA~~ 91 (539)
T KOG0548|consen 88 EAIL 91 (539)
T ss_pred HHHH
Confidence 8875
No 221
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=52.97 E-value=46 Score=26.48 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCChhhHHHHHHH--HhhhcCCchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 10 RGVVRDCVSKHLYSSAIFFADK--VAALTNDPADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aek--l~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
..+|+.|++.+.++.|+-.-.- .+-+.+++-+..++=..++..|+|..|..+..
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~ 162 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVAT 162 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHH
Confidence 4689999999999999876543 44444788888999999999999999988764
No 222
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.02 E-value=85 Score=22.42 Aligned_cols=74 Identities=14% Similarity=-0.099 Sum_probs=40.4
Q ss_pred HHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
..||+++|+.|+=+= ..-+-.+.-.....+++...|++.-|...++..+-...+..-.-++... +..+...||.
T Consensus 87 W~LD~~~~~~A~~~L---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 87 WLLDHGDFEEALELL---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred HHhChHhHHHHHHHh---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 357777777776321 1111134445567777888888888888877655433443322222222 4445555554
No 223
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.93 E-value=82 Score=26.29 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=52.3
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCL 82 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~ 82 (95)
+=+-+...+.|+.||-...+.+.++| +++.---.|-|+...|++..|+.-+.+.- +.+.+..+.=+...+.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34566778999999999999999997 56666678999999999999999887752 2233334444444443
No 224
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.51 E-value=90 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCC
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRH 54 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~ 54 (95)
+.+-.-++.-++|+.|+|-=|-++-++| +|----.||.++|-.|.
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 4556678899999999999999999998 55556668888888876
No 225
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=50.48 E-value=28 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhh
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAAL 35 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~ 35 (95)
++++|+..+. +++..-+.|+|||++|.
T Consensus 56 tL~aL~~~~e----~~~l~q~afLAErLlAQ 82 (175)
T COG3923 56 TLTALKQAVE----QDRLPQVAFLAERLLAQ 82 (175)
T ss_pred HHHHHHHHHh----ccchHHHHHHHHHHHHH
Confidence 4555555554 67777899999999875
No 226
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=49.48 E-value=68 Score=20.58 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc-C-CchhHHHH----HHHHhhCCCHHHHHHHHhcC
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT-N-DPADVYMQ----AQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-~-~~~~~~ll----A~~l~~~~~~~~A~~ll~~~ 65 (95)
-|.-|.+.|..|+.+.|+=|.+.....- . +++=.|.+ --=+.+.|+..+|+...+++
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~ 66 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKH 66 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667888999999999999999875443 2 23322222 22355678888888888874
No 227
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=49.05 E-value=87 Score=21.67 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHhCChhhHHHHHHHHhhhcCCchhHHHHH---------------HHHhhCCCHHHHHHHHhcC
Q 040780 16 CVSKHLYSSAIFFADKVAALTNDPADVYMQA---------------QALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA---------------~~l~~~~~~~~A~~ll~~~ 65 (95)
-+..+-..+....|-+++++....+.++.+| .++...|++..|..++++.
T Consensus 51 llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 51 LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3346677788888888888875322233322 5788999999999999874
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.16 E-value=49 Score=25.27 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=43.5
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
..+..+--+.-....|++..|..+++..- ....+.....+.|+|+++.|+.++|..+|
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL 191 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAIL 191 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHH
Confidence 34566666777888899988888776531 22345677889999999999999987764
No 229
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=47.14 E-value=1.2e+02 Score=22.74 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHHHH-HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 4 EEIEKLRGVVR-DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 4 ~~~~~Lr~~v~-~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+.+.+|....+ -.+...+++.|.+.+++++.++| +|..+=-=|..|.+.|-++.|..=++..
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 34444444443 45678899999999999999986 6766766788999999999999877763
No 230
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.33 E-value=86 Score=26.99 Aligned_cols=48 Identities=13% Similarity=-0.017 Sum_probs=34.5
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+.|+.+.|+=.-.+.+.+++ .+++++-||..+.-.|....|..+..+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45677777777777777775 5677777777777777777777766553
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=46.05 E-value=1.5e+02 Score=23.54 Aligned_cols=71 Identities=20% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHH---------hhhcCCchhHHH-------------HHHHHhhCCCHHHHHHHHhc
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKV---------AALTNDPADVYM-------------QAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl---------~a~~~~~~~~~l-------------lA~~l~~~~~~~~A~~ll~~ 64 (95)
++-+.+-..++.+++++-|..--.|. +..+++.+.+-- --+|.+..|++..++.+|.+
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35667777888888888776654442 222233222222 22366677777777777776
Q ss_pred CcccccChhhHHHHHHH
Q 040780 65 SKIVLRDLRFRYLAAKC 81 (95)
Q Consensus 65 ~~l~~~~~~c~yL~A~c 81 (95)
.+ ...-++++|+.
T Consensus 428 ~~----~~~~A~~~A~t 440 (443)
T PF04053_consen 428 TG----RLPEAALFART 440 (443)
T ss_dssp TT-----HHHHHHHHHH
T ss_pred cC----CchHHHHHHHh
Confidence 43 23444666654
No 232
>PF12854 PPR_1: PPR repeat
Probab=45.96 E-value=38 Score=16.68 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCHHHHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~ 64 (95)
-.+-.++.+.|+...|..+++.
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 3456678888888888888764
No 233
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=45.57 E-value=1.3e+02 Score=22.63 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+.-+.-+.+++...+..+.+++++---+++..++| +...-..+=..|+.+|....|+...++
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 34456677889999999999999999999999998 444555567799999999999887765
No 234
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.33 E-value=97 Score=25.07 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCC---CHHHHHHHHhcCcccccChhhHHHHHHHHH
Q 040780 21 LYSSAIFFADKVAALTNDPADVYMQAQALFLGR---HYRRAFHLLNASKIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~---~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~ 83 (95)
.++.|.++-.+...+ ++++..|.+|.|+.... ++++|.++....-. ..|+...|=.|+|..
T Consensus 308 d~~~A~~~~~~aA~~-g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHILAIYRLALCYE 371 (552)
T ss_pred cHHHHHHHHHHHHhc-CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence 678899988887655 78899999999999887 56889888765421 245555565666654
No 235
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.05 E-value=22 Score=29.39 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 21 LYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.+.+|--+||..+.++. ++..+--.+..-|.+|++..|....+..- -+.......|=.+...-++++.+||++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald 545 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALD 545 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHH
Confidence 45677788888888886 67777777888899999999988776531 112233345555666667888888875
No 236
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.99 E-value=56 Score=27.26 Aligned_cols=54 Identities=24% Similarity=0.427 Sum_probs=42.3
Q ss_pred CCchhHHHHHHHHhhCCCHHHHHHHHhcCc-cc---ccChhhHHHHHHHHHHcccHHHHHh
Q 040780 37 NDPADVYMQAQALFLGRHYRRAFHLLNASK-IV---LRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~---~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+.|+-+.+.+-..-..|.|..++.++.... .. .+...|+ .+...++++|++|..
T Consensus 321 ~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~---~r~~~~l~r~~~a~s 378 (831)
T PRK15180 321 QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCR---LRSLHGLARWREALS 378 (831)
T ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHH---HHhhhchhhHHHHHH
Confidence 478899999999999999999999997642 21 2334454 688899999999864
No 237
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.70 E-value=6.7 Score=29.02 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.1
Q ss_pred HhCChhhHHHHHHHHhhhcCCc
Q 040780 18 SKHLYSSAIFFADKVAALTNDP 39 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~~ 39 (95)
=.|..+.|+|+|||++-+++.|
T Consensus 187 VTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 187 VTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EeCCHHHHHhhhCEEEEecCCC
Confidence 3699999999999999999654
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=44.44 E-value=1.7e+02 Score=23.76 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch-hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA-DVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~-~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+--||.+--..-..|.++.|+-+||+....-|... ..--.=.-....|++..|+.+++.
T Consensus 153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 153 RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 345678888888889999999999999998887433 222222356789999999999874
No 239
>PLN02789 farnesyltranstransferase
Probab=43.35 E-value=93 Score=23.45 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhhhcCCchhHHH-HHHHHhhCCCHHHHHHHHhc
Q 040780 23 SSAIFFADKVAALTNDPADVYM-QAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 23 ~~AiF~Aekl~a~~~~~~~~~l-lA~~l~~~~~~~~A~~ll~~ 64 (95)
+.++-+.++++..++....++. .+-++...|+|..++...++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455555555555543222222 24455555555555554443
No 240
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.00 E-value=66 Score=24.98 Aligned_cols=84 Identities=13% Similarity=-0.003 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhh--hcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAA--LTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK 80 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a--~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~ 80 (95)
..++.++++|..+-..+..+.+--|||---. .+--..-+..-|.-+..+|.|..|+.+.++. .+++-+...-.++.+
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~ 321 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMA 321 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 3577888888888777777777778762110 0001223344577788888888888888764 233344455566666
Q ss_pred HHHHccc
Q 040780 81 CLEELKE 87 (95)
Q Consensus 81 c~~~l~~ 87 (95)
.+..+|+
T Consensus 322 ~la~~gD 328 (361)
T COG3947 322 SLATLGD 328 (361)
T ss_pred HHHHhcc
Confidence 6666665
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=42.55 E-value=55 Score=23.67 Aligned_cols=55 Identities=20% Similarity=-0.027 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcCcc-----cccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNASKI-----VLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~~l-----~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
....+|......|++..|...+.+..- ....+...+-.|+-+.+.|+-.+|+..|
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L 207 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKL 207 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHH
Confidence 444568899999999999998876421 0115778888999999999999998754
No 242
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=42.15 E-value=1.4e+02 Score=23.66 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
.-...+--+.++.|+.|.-=-|.+..+.| +++-+-+-.++|+..|.|.....++.
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33445666778888888888888888886 45555555678888888888877774
No 243
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=41.49 E-value=1.3e+02 Score=21.67 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc---CC---chhHHHHHHHHhhCCCHHHHHHHHhcC-------ccccc
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALT---ND---PADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLR 70 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~~---~~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~ 70 (95)
+-.+.+...-..+-..++|+.|.-.-+|..... ++ ....|.-|--.+..+++..|+..+++. |-...
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHH
Confidence 445666777777888889998888888876655 22 124444444455666888887777643 22222
Q ss_pred ChhhHHHHHHHHHHc-ccHHHHHh
Q 040780 71 DLRFRYLAAKCLEEL-KEWEQCLS 93 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l-~~~~eal~ 93 (95)
-..+..-.|..+.+. +++++|+.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~ 136 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIE 136 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334455555555555 67777765
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=41.40 E-value=82 Score=19.15 Aligned_cols=84 Identities=19% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhh--hc-CCchhHHHHHHHHhhCCCHHHHHHHHhcCccc-ccChhhHHHHHH-HHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAA--LT-NDPADVYMQAQALFLGRHYRRAFHLLNASKIV-LRDLRFRYLAAK-CLEE 84 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a--~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~-~~~~~c~yL~A~-c~~~ 84 (95)
..........+.++.++...+.... .. ......+..+......+++..++..+.+.... ..........+. +...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 3344445555556666666666554 22 23444555566666666666666665543211 111122333333 5556
Q ss_pred cccHHHHHh
Q 040780 85 LKEWEQCLS 93 (95)
Q Consensus 85 l~~~~eal~ 93 (95)
.+++++|+.
T Consensus 143 ~~~~~~a~~ 151 (291)
T COG0457 143 LGDYEEALE 151 (291)
T ss_pred cCCHHHHHH
Confidence 666665544
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=41.20 E-value=1.1e+02 Score=22.21 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=50.5
Q ss_pred HHHhCChhhHHHHHHHHhhhc--CCchh-------HHHHHHHHhhCC-CHHHHHHHHhcCc--------cccc-------
Q 040780 16 CVSKHLYSSAIFFADKVAALT--NDPAD-------VYMQAQALFLGR-HYRRAFHLLNASK--------IVLR------- 70 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~--~~~~~-------~~llA~~l~~~~-~~~~A~~ll~~~~--------l~~~------- 70 (95)
+..+++.+-|.++-.|+-.+. .+|+. .|-.|..++..+ +|..|..++++.- ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999976665 24543 455567777888 9988877776431 1111
Q ss_pred ChhhHHHHHHHHHHcccHHH
Q 040780 71 DLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~e 90 (95)
...+.-+.|+++++.+.++.
T Consensus 83 r~~iL~~La~~~l~~~~~~~ 102 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYES 102 (278)
T ss_pred HHHHHHHHHHHHHcCCChHH
Confidence 23456677888888776543
No 246
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.45 E-value=98 Score=24.04 Aligned_cols=50 Identities=18% Similarity=0.032 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRA 58 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A 58 (95)
+-..-..|++.+.+.+|+-+.-|+..++| ++.+-..|-+.|-..|+-+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhh
Confidence 34556789999999999999999999998 777777888888888874433
No 247
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.28 E-value=99 Score=21.37 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=39.4
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHH---HHHHHHhcC
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYR---RAFHLLNAS 65 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~---~A~~ll~~~ 65 (95)
.+-+|..++|++|+=.=+-+..-.+ .|-.-=++|.||+..|++. .|..++.+.
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 5667999999999988887755554 5666788899999988753 345566653
No 248
>PRK10093 primosomal replication protein N''; Provisional
Probab=39.07 E-value=55 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=16.3
Q ss_pred HHHhCChhhHHHHHHHHhhhc
Q 040780 16 CVSKHLYSSAIFFADKVAALT 36 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~ 36 (95)
....+....+.|++||+++..
T Consensus 59 ~~~~~~~~~~~flaEkL~aQi 79 (171)
T PRK10093 59 AVEQQQLPQVAWLAEHLAAQL 79 (171)
T ss_pred HHhcCcHHHHHHHHHHHHHHH
Confidence 334666789999999998764
No 249
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=37.68 E-value=45 Score=15.18 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=15.7
Q ss_pred HHHHHhhCCCHHHHHHHHhc
Q 040780 45 QAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 45 lA~~l~~~~~~~~A~~ll~~ 64 (95)
+-.++.+.|++..|..+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34678889999999888865
No 250
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.36 E-value=73 Score=28.29 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYM 44 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~l 44 (95)
.|--||..+..+-...+|++|-++|-|++.+.++|+-.-.
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3567899999999999999999999999999987665443
No 251
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.02 E-value=64 Score=17.33 Aligned_cols=22 Identities=23% Similarity=0.058 Sum_probs=18.9
Q ss_pred HHHHHHHhhCCCHHHHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+-||..|.-.|++..|-.+++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEE 24 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHH
Confidence 4579999999999999988875
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.00 E-value=90 Score=22.16 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=33.8
Q ss_pred HhCChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 18 SKHLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..-+..|+++=++.+.-... ..-+|++|.-.++.|++..|...+.+
T Consensus 137 E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 137 EKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334456677777776655532 23678899999999999999888765
No 253
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.83 E-value=44 Score=15.03 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHHHHhhCCCHHHHHHHHhc
Q 040780 45 QAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 45 lA~~l~~~~~~~~A~~ll~~ 64 (95)
+-+++...|++..|..+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 34677888888888887765
No 254
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.00 E-value=51 Score=23.45 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 71 DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.....||.|.-.+++|+++||+..
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356899999999999999999864
No 255
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.42 E-value=2.1e+02 Score=24.80 Aligned_cols=75 Identities=17% Similarity=0.073 Sum_probs=38.7
Q ss_pred HhCChhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 18 SKHLYSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
++|+.|=||---+|.++++|+-++.| -+|..+--.|+..+|...-++. .+-..|+..-+=.|....+.+++++|.
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 45555556666666666665433332 3455555555555554443332 122345555555555566666666654
No 256
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.29 E-value=15 Score=27.09 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred HhCChhhHHHHHHHHhhhcCC
Q 040780 18 SKHLYSSAIFFADKVAALTND 38 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~ 38 (95)
-.|..+.|+|+|++++-++|.
T Consensus 189 iTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 189 ITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred EeccHHHHHhhhheeEEecCC
Confidence 368899999999999999964
No 257
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.55 E-value=59 Score=14.97 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=15.1
Q ss_pred HHHHHhhCCCHHHHHHHHhc
Q 040780 45 QAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 45 lA~~l~~~~~~~~A~~ll~~ 64 (95)
+-.++...|+++.|..+++.
T Consensus 7 ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45677788888888887764
No 258
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=31.61 E-value=1.4e+02 Score=20.64 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=38.8
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHH---HHHHHHhc
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYR---RAFHLLNA 64 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~---~A~~ll~~ 64 (95)
++-++..++|++|+=.=..+..-.+ .|-.-=++|.|++..|++. -|.+++.+
T Consensus 51 g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~ 106 (153)
T TIGR02561 51 GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHADEVLAR 106 (153)
T ss_pred HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 4667889999999988777766654 4667789999999999863 34455554
No 259
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.57 E-value=1.3e+02 Score=18.71 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=31.6
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHH-HHHHHHHccc
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYL-AAKCLEELKE 87 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL-~A~c~~~l~~ 87 (95)
....-|..-+..|++.+|...+.+..-....+...|| +|++-.+.|+
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4445577788899999999888765323445555555 6777666553
No 260
>PF13041 PPR_2: PPR repeat family
Probab=31.36 E-value=84 Score=16.31 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCHHHHHHHHhc
Q 040780 44 MQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 44 llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+-.++.+.|++..|..+++.
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKE 28 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 345678999999999998875
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.21 E-value=2e+02 Score=26.28 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcCc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNASK 66 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~~ 66 (95)
..++.-+...+++..|..++..+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 566677777777777777776653
No 262
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.06 E-value=2.4e+02 Score=21.59 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+.......+++.|..+. ++ .++...| ..+++..++.++.+.|++..|..++++.
T Consensus 12 ~~q~~F~~~v~~~Dp~~-l~---~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 12 EAQEQFYAAVQSHDPNA-LI---NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHccCHHH-HH---HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555563332 22 2234556 8899999999999999999999999863
No 263
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.68 E-value=73 Score=27.54 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----------chhHHHHHH-HHhhCCCHHHHHHHHhc
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTND----------PADVYMQAQ-ALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----------~~~~~llA~-~l~~~~~~~~A~~ll~~ 64 (95)
.-+.++|+-+++.+.|++|.-+|||.=..-++ +.|-|--|+ ++.+.|+-++|.+++++
T Consensus 774 gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 774 GDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred ccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 34678999999999999999999997554432 223333332 67788888888888875
No 264
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.53 E-value=2e+02 Score=23.96 Aligned_cols=78 Identities=10% Similarity=-0.050 Sum_probs=59.3
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.+++|...+|+-.-|-.+-.+| +.+.=.+||.+...+++=..|+..+++. ++++++.....=.|-|+.--+.=.+|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4678889999999999999887 5666677899999999999999988875 4666666665555666655555555544
No 265
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=30.23 E-value=2.4e+02 Score=21.16 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
++.-+..-|+.++.++||=.++--+-..| +..--+.|=+-|...|+|.+|.+=++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 45667777889999999999988777776 555667777889999999999887653
No 266
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=29.93 E-value=70 Score=14.98 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=16.1
Q ss_pred hhHHHHHHHHhhC----CCHHHHHHHHhc
Q 040780 40 ADVYMQAQALFLG----RHYRRAFHLLNA 64 (95)
Q Consensus 40 ~~~~llA~~l~~~----~~~~~A~~ll~~ 64 (95)
++.+.+|.+++.. .++..|+.++++
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~ 30 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKK 30 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 4567777777643 266777776654
No 267
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=29.89 E-value=62 Score=27.73 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=36.9
Q ss_pred HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 45 QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 45 lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+|.-.+++++|..+..-++.. .+.+-.++.-|-.|-|.+++++++.|.+.
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 344457778899888887764 23345567778888899999999998763
No 268
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.24 E-value=3.6e+02 Score=24.35 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLL 62 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll 62 (95)
.+.=|.|++.-.+-++|+.|+=.|||.... .++-.+++++....+..+...-.
T Consensus 772 ~~~Rrdwlq~L~~vg~~e~Ai~iAEKY~Df----qsLV~lcdqld~kdrLq~y~~~~ 824 (1128)
T KOG4121|consen 772 DDNRRDWLQVLCKVGQYEQAIQIAEKYKDF----QSLVQLCDQLDQKDRLQDYETFF 824 (1128)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhhH----HHHHHHHHhhCchhHHHHHHHHH
Confidence 345578999999999999999999998654 45555555555555444444433
No 269
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.94 E-value=1.4e+02 Score=24.20 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 25 AIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 25 AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+|=++.|.-+-.+..+.-|--|.-+|+.++|.+|+..+..
T Consensus 505 ~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~ 544 (569)
T PRK04778 505 LIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIAT 544 (569)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4445777777777888999999999999999999998854
No 270
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=28.19 E-value=1.2e+02 Score=24.15 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcCccc----c------cChhhHHHHHHHHHHcccHHHHH
Q 040780 43 YMQAQALFLGRHYRRAFHLLNASKIV----L------RDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~~l~----~------~~~~c~yL~A~c~~~l~~~~eal 92 (95)
-++-+.|++.|+++-+-.+++..... . .-.-.+|..|+|..-..++.||-
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~ 240 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAF 240 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHH
Confidence 34567899999999999999865421 0 11246899999999999988874
No 271
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.55 E-value=1.7e+02 Score=19.20 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 52 GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 52 ~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+++...+..+.+.++=.++...--=+|..+-..|+|++|..+
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3678888888888765333333333458999999999999876
No 272
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=27.53 E-value=89 Score=21.55 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT 36 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~ 36 (95)
++.+|...+. .+....+.|+|||+++..
T Consensus 52 ~l~~L~~~~~----~~~~~~~~~laEkL~~Q~ 79 (173)
T PF07445_consen 52 TLAQLQQQVE----QNRLQQVAFLAEKLVAQI 79 (173)
T ss_pred HHHHHHHHHh----cChHHHHHHHHHHHHHHH
Confidence 3445555444 333388999999998653
No 273
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=27.25 E-value=1.2e+02 Score=26.84 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=43.6
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhc--C-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALT--N-DPADVYMQAQALFLGRHYRRAFHLLNASKI 67 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~--~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l 67 (95)
..|.-+++++|||.|+--|-+- + | -...|-++|.-+.+.|...+|..++.++|-
T Consensus 1297 aaidl~ien~qwdk~idtak~q---nykpil~kyva~yaa~li~~~d~aq~lal~~q~ga 1353 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQ---NYKPILDKYVALYAAHLIHEGDLAQALALLEQHGA 1353 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCC
Confidence 4577789999999999777653 2 2 245788999999999999999999998763
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.60 E-value=1.5e+02 Score=23.87 Aligned_cols=67 Identities=24% Similarity=0.170 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHhhhcCC--c---------hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhHHHHHHHH
Q 040780 21 LYSSAIFFADKVAALTND--P---------ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~~--~---------~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~yL~A~c~ 82 (95)
.|+.|+||+-|.+++.++ . -++|-+|-.|.+.|+.-.|....+.. |-...+..|-..+|.-+
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 489999999999999853 1 26777788888888877666655432 21223445555556555
Q ss_pred HHccc
Q 040780 83 EELKE 87 (95)
Q Consensus 83 ~~l~~ 87 (95)
...++
T Consensus 257 R~~gd 261 (518)
T KOG1941|consen 257 RSRGD 261 (518)
T ss_pred Hhccc
Confidence 55554
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.26 E-value=2.1e+02 Score=23.10 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=50.4
Q ss_pred CChhhHHHHHHHHhh------hcCCchhHHHHHHHHhhCC-----CHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780 20 HLYSSAIFFADKVAA------LTNDPADVYMQAQALFLGR-----HYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a------~~~~~~~~~llA~~l~~~~-----~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~ 86 (95)
.+.+.|++|-.+... ..+.+...+-+|.+|+... ++..|..+..+.- ...++.+.|+.|.|...-.
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELGNPDAQYLLGVLYETGT 339 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcCCchHHHHHHHHHHcCC
Confidence 467889999888755 1247889999999999964 6677888776642 2467889999999987643
No 276
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=26.23 E-value=2.7e+02 Score=20.49 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=54.7
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC---CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN---DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~---~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
+--+..+.+..|.=.=|++..-.| +|+...++|.+|-..|+|..|-.-++..-..-..+..+..++.-+.+.|+-+|
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhH
Confidence 333445556666666677776664 79999999999999999996655444321112456667777888889988777
Q ss_pred HH
Q 040780 91 CL 92 (95)
Q Consensus 91 al 92 (95)
+-
T Consensus 212 a~ 213 (251)
T COG4700 212 AN 213 (251)
T ss_pred HH
Confidence 63
No 277
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=25.95 E-value=1.1e+02 Score=18.74 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYM 44 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~l 44 (95)
.+..+.+++.+..--+|.-+||.|..-.+.|+..|.
T Consensus 5 e~~~i~~yi~n~~~Isa~elcE~LI~~~~~~~~rys 40 (78)
T PF13034_consen 5 EKEFINWYIQNEEEISARELCEYLIENGGSPNKRYS 40 (78)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHcCCCcccccc
Confidence 467888999999999999999999998877666543
No 278
>PF15310 VAD1-2: Vitamin A-deficiency (VAD) rat model signalling
Probab=24.65 E-value=19 Score=26.40 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=10.5
Q ss_pred hhHHHHHHHHhhhc
Q 040780 23 SSAIFFADKVAALT 36 (95)
Q Consensus 23 ~~AiF~Aekl~a~~ 36 (95)
..=+|||||+.--+
T Consensus 17 SkHLFWadKliQaS 30 (245)
T PF15310_consen 17 SKHLFWADKLIQAS 30 (245)
T ss_pred cccceeccchhhhh
Confidence 44589999987654
No 279
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=24.45 E-value=25 Score=28.48 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHhCChhhHHHHHHHHh--hhcC--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVA--ALTN--DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~--a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.++-++..+++..|.-..+.+- .+++ ..+...+.|......|++..|...+..
T Consensus 30 Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 30 AARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 3444455555555555555544 2222 233444445555556666666555554
No 280
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=23.91 E-value=1.4e+02 Score=19.18 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFAD 30 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Ae 30 (95)
.+-+...+...++.+.++.|+-+.+
T Consensus 70 ~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 70 EELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555555555555555444
No 281
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=23.84 E-value=1.3e+02 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHhCChhhHHHHHHHHhhhc---C----CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 15 DCVSKHLYSSAIFFADKVAALT---N----DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~---~----~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
.++-.+++++|+-.--+.+.+- + ...+-|-||..|+...+++.|+..-.++
T Consensus 244 ~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred hhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3456678888887777755554 2 2448899999999999999998877665
No 282
>cd00103 IRF Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The IRF family is characterized by a unique 'tryptophan cluster' DNA-binding region. Viral IRFs bind to cellular IRFs; block type I and II interferons and host IRF-mediated transcriptional activation.
Probab=23.61 E-value=17 Score=23.34 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKV 32 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl 32 (95)
+||.|+.+.++.+.|. .++|.|.=
T Consensus 3 ~lr~WL~~~i~sg~yp-GL~W~d~e 26 (107)
T cd00103 3 RLRPWLVEQVDSGTYP-GLIWLDEE 26 (107)
T ss_pred chHHHHHHHhccCCCC-CCeEecCC
Confidence 6899999999999999 79999874
No 283
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.45 E-value=2.9e+02 Score=24.68 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK 66 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~ 66 (95)
.+.|.-.+..-+|+.|+..-|.+-........-=..|+-|-..|+|.+|-.+....+
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 344555566667777777666553332111122234555555666666666665543
No 284
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.44 E-value=3e+02 Score=20.01 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhh----c-C-CchhHHHHHHHHhhCCC--------HHHHHHHHhcCccc
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAL----T-N-DPADVYMQAQALFLGRH--------YRRAFHLLNASKIV 68 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~----~-~-~~~~~~llA~~l~~~~~--------~~~A~~ll~~~~l~ 68 (95)
++.++-|.+-...-++++|+.+|.=+|--++.. . + +.+++--+++++-..+. -++|+.+.+..+-.
T Consensus 7 ~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~ 86 (260)
T PF04190_consen 7 DEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYK 86 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-T
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCC
Confidence 567778888888888899999988888665543 1 1 44455566665554432 34566666433333
Q ss_pred ccChhhHHHHHHHHHHcccHHHHHh
Q 040780 69 LRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 69 ~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
..++....++|..+++-+++.+|..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHH
Confidence 4678888899999999999988874
No 285
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.32 E-value=2.6e+02 Score=24.19 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=54.1
Q ss_pred HHhCChhhHHHHHHHH-hhhc-CCchhHHHH-----HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 17 VSKHLYSSAIFFADKV-AALT-NDPADVYMQ-----AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl-~a~~-~~~~~~~ll-----A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
-.-..|.+|+-|-++- .-+. +..+++|.. +-||....|..+|...+... +.+++++.|...--+.-..-++-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3456788888888773 2232 345566654 55999999999999988754 23456788877777776677777
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
++|+.+
T Consensus 445 e~AL~~ 450 (872)
T KOG4814|consen 445 EEALTC 450 (872)
T ss_pred HHHHHH
Confidence 777654
No 286
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=23.21 E-value=3e+02 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=20.9
Q ss_pred ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 67 IVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 67 l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+...+...-|=.++|+.+++++.||++
T Consensus 440 ln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 440 LNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 344455666778999999999999986
No 287
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=23.18 E-value=2e+02 Score=21.70 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=37.1
Q ss_pred ChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 21 LYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
..-.|+.+-|.++.-+| ++.--.++...|...|-..+|.....+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34568888899988887 788888999999999999999888875
No 288
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.94 E-value=4.8e+02 Score=26.85 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHH----HHHHhhCC-CHHHHHHHHhcCccc----ccChh
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQ----AQALFLGR-HYRRAFHLLNASKIV----LRDLR 73 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~ll----A~~l~~~~-~~~~A~~ll~~~~l~----~~~~~ 73 (95)
++.+-+-..-+-+..++.++.+++-=.|++++.. ...+.|.. +.||+.+. +...+..++++-++. .....
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~ae 2813 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAE 2813 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHH
Confidence 3444444555556689999999999999999974 66677776 88999998 899999999886431 23455
Q ss_pred hHHHHHHHHHHcccHHHHHh
Q 040780 74 FRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~ 93 (95)
...+.|.=+.++++++||-+
T Consensus 2814 ff~lkG~f~~kL~~~eeAn~ 2833 (3550)
T KOG0889|consen 2814 FFTLKGMFLEKLGKFEEANK 2833 (3550)
T ss_pred HHHhhhHHHHHhcCcchhHH
Confidence 77888999999999998854
No 289
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=22.90 E-value=2.2e+02 Score=18.62 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.9
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALT 36 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~ 36 (95)
......++.|.|+.|.|+|...+.+.
T Consensus 18 ~~A~~~le~G~y~~a~f~aqQAvel~ 43 (132)
T COG2250 18 KLAKRDLELGDYDLACFHAQQAVELA 43 (132)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 34455679999999999998876554
No 290
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.81 E-value=1.5e+02 Score=19.16 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=31.9
Q ss_pred CCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 53 RHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 53 ~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.++...+..+.+.++-.++..+---.|..+...|++++|..+
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I 121 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEI 121 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 367777777777766566777777789999999999999876
No 291
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=22.59 E-value=1.1e+02 Score=18.22 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=27.6
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQA 46 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA 46 (95)
..++++.|+-.+.+|=++....+ ..+++|++.
T Consensus 32 ~~iEkgky~Psl~La~kia~~f~~~iedIF~~~ 64 (68)
T COG1476 32 IAIEKGKYNPSLELALKIARVFGKTIEDIFQLE 64 (68)
T ss_pred HHHHcCCCCchHHHHHHHHHHhCCCHHHHHhhh
Confidence 46889999999999999888875 889999875
No 292
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=21.65 E-value=97 Score=18.09 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFAD 30 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Ae 30 (95)
+.+..+|+.-++.|.|.|+==+-.
T Consensus 8 ~~~~~~i~~~V~sG~Y~s~SEVir 31 (69)
T TIGR02606 8 EHLESFIRSQVQSGRYGSASEVVR 31 (69)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHH
Confidence 456777777888888877644433
No 293
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.20 E-value=1.3e+02 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.0
Q ss_pred CCchhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780 37 NDPADVYMQAQALFLGRHYRRAFHLLNASK 66 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~~~~A~~ll~~~~ 66 (95)
+++.++++.++-.|..|+|..|+.++-..+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 578999999999999999999999987654
No 294
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=20.86 E-value=4.2e+02 Score=20.79 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhc-----CCchhHHHHHHHHhh---CCCHHHHHHHHhcC--cccccChhhHHHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALT-----NDPADVYMQAQALFL---GRHYRRAFHLLNAS--KIVLRDLRFRYLAA 79 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~-----~~~~~~~llA~~l~~---~~~~~~A~~ll~~~--~l~~~~~~c~yL~A 79 (95)
..+.-.+.+...|+.=|=++|.+-.+. .++.--+++|.++-+ .|+..+|..++..- +.....+....|.|
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344556788889999999999998883 256678899999999 99999999987651 11245566666777
Q ss_pred HHHHH
Q 040780 80 KCLEE 84 (95)
Q Consensus 80 ~c~~~ 84 (95)
+.+=+
T Consensus 225 RIyKD 229 (374)
T PF13281_consen 225 RIYKD 229 (374)
T ss_pred HHHHH
Confidence 76543
No 295
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=4.8e+02 Score=22.71 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHhCChhhHHHHHHHHhhhcCCchhHHHHHH---HHhhCCCHHHHHHHHhcC-------------cccccChhhHHHHHH
Q 040780 17 VSKHLYSSAIFFADKVAALTNDPADVYMQAQ---ALFLGRHYRRAFHLLNAS-------------KIVLRDLRFRYLAAK 80 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~---~l~~~~~~~~A~~ll~~~-------------~l~~~~~~c~yL~A~ 80 (95)
++.++|.--.-+=.-...+-|.|+|+-++=. .|..-++|-+|..+.-.- .=....-+|.|+.||
T Consensus 214 Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR 293 (878)
T KOG2005|consen 214 VDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLAR 293 (878)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3333333333333333334456787777633 456677888877654221 000123468899998
Q ss_pred HHH
Q 040780 81 CLE 83 (95)
Q Consensus 81 c~~ 83 (95)
|-.
T Consensus 294 ~~i 296 (878)
T KOG2005|consen 294 HGI 296 (878)
T ss_pred cCC
Confidence 865
No 296
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=20.53 E-value=1.7e+02 Score=19.03 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=22.7
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+++-+.-.+.++..+|++..|+.+++.
T Consensus 51 t~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 51 TSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455677778999999999999998864
Done!