Query 040780
Match_columns 95
No_of_seqs 104 out of 271
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ffl_A Anaphase-promoting comp 99.4 1.7E-13 5.9E-18 94.0 7.1 88 8-95 22-145 (167)
2 3upv_A Heat shock protein STI1 98.7 1.9E-07 6.7E-12 57.3 9.8 90 5-94 3-94 (126)
3 4gco_A Protein STI-1; structur 98.7 1.8E-07 6.1E-12 59.0 9.8 90 5-94 12-103 (126)
4 2xcb_A PCRH, regulatory protei 98.7 1.8E-07 6.3E-12 59.2 9.9 91 4-94 16-108 (142)
5 3gyz_A Chaperone protein IPGC; 98.7 1.6E-07 5.5E-12 61.8 9.6 90 5-94 35-126 (151)
6 1elw_A TPR1-domain of HOP; HOP 98.7 2.3E-07 7.9E-12 54.7 8.9 89 6-94 4-94 (118)
7 3sz7_A HSC70 cochaperone (SGT) 98.7 3.2E-07 1.1E-11 59.0 9.8 91 4-94 9-101 (164)
8 2xpi_A Anaphase-promoting comp 98.6 2.7E-07 9.3E-12 69.1 10.2 90 5-94 83-172 (597)
9 2vgx_A Chaperone SYCD; alterna 98.6 4.2E-07 1.4E-11 58.6 9.8 90 5-94 20-111 (148)
10 2lni_A Stress-induced-phosphop 98.6 4.7E-07 1.6E-11 54.7 9.2 90 5-94 15-106 (133)
11 2xev_A YBGF; tetratricopeptide 98.6 6.2E-07 2.1E-11 54.6 9.3 85 10-94 6-98 (129)
12 3q49_B STIP1 homology and U bo 98.6 6.8E-07 2.3E-11 54.9 9.5 89 6-94 9-99 (137)
13 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.9E-11 52.4 10.0 90 5-94 11-102 (131)
14 2dba_A Smooth muscle cell asso 98.5 1E-06 3.5E-11 54.3 9.2 89 6-94 28-121 (148)
15 1a17_A Serine/threonine protei 98.5 1.5E-06 5E-11 54.5 9.8 90 5-94 12-103 (166)
16 1hxi_A PEX5, peroxisome target 98.5 7.5E-07 2.6E-11 55.6 8.1 84 11-94 22-107 (121)
17 1elr_A TPR2A-domain of HOP; HO 98.5 1.4E-06 4.8E-11 52.1 8.7 90 5-94 3-101 (131)
18 2kck_A TPR repeat; tetratricop 98.5 7.1E-07 2.4E-11 52.2 6.8 84 11-94 11-99 (112)
19 3urz_A Uncharacterized protein 98.4 1.2E-06 4.2E-11 58.8 8.0 89 6-94 4-110 (208)
20 1na0_A Designed protein CTPR3; 98.4 5.3E-06 1.8E-10 49.0 9.7 89 6-94 9-99 (125)
21 2l6j_A TPR repeat-containing p 98.4 1.2E-06 4E-11 51.9 6.5 88 6-93 4-99 (111)
22 2fbn_A 70 kDa peptidylprolyl i 98.4 5E-06 1.7E-10 54.8 10.2 90 5-94 37-144 (198)
23 3rkv_A Putative peptidylprolyl 98.4 2E-06 6.8E-11 55.1 7.6 90 5-94 10-119 (162)
24 3k9i_A BH0479 protein; putativ 98.3 3.4E-07 1.2E-11 56.1 3.7 76 19-94 3-83 (117)
25 2gw1_A Mitochondrial precursor 98.3 4.1E-06 1.4E-10 61.0 9.5 92 3-94 3-95 (514)
26 3vtx_A MAMA; tetratricopeptide 98.3 7.8E-06 2.7E-10 52.7 9.5 84 11-94 78-163 (184)
27 2fo7_A Synthetic consensus TPR 98.3 1.1E-05 3.8E-10 47.8 9.2 85 10-94 39-125 (136)
28 4ga2_A E3 SUMO-protein ligase 98.3 2.1E-06 7.2E-11 55.2 6.2 82 12-93 37-120 (150)
29 3ieg_A DNAJ homolog subfamily 98.3 5.6E-06 1.9E-10 57.2 8.8 89 6-94 3-93 (359)
30 2c2l_A CHIP, carboxy terminus 98.3 9.4E-06 3.2E-10 57.1 10.1 88 7-94 5-94 (281)
31 4i17_A Hypothetical protein; T 98.3 7.7E-06 2.6E-10 54.5 9.2 88 7-94 8-98 (228)
32 1xnf_A Lipoprotein NLPI; TPR, 98.2 1.2E-05 4.3E-10 53.9 9.9 89 6-94 43-133 (275)
33 2fo7_A Synthetic consensus TPR 98.2 1.3E-05 4.3E-10 47.6 8.5 86 9-94 4-91 (136)
34 2pl2_A Hypothetical conserved 98.2 8.7E-06 3E-10 54.9 8.5 86 9-94 8-106 (217)
35 3as5_A MAMA; tetratricopeptide 98.2 1.4E-05 5E-10 50.1 9.1 47 16-62 52-99 (186)
36 3as5_A MAMA; tetratricopeptide 98.2 2.5E-05 8.7E-10 48.9 9.5 86 9-94 79-166 (186)
37 3uq3_A Heat shock protein STI1 98.1 2.3E-05 8E-10 51.8 9.6 90 5-94 4-101 (258)
38 4gcn_A Protein STI-1; structur 98.1 2.9E-05 1E-09 48.5 9.5 87 8-94 10-105 (127)
39 2e2e_A Formate-dependent nitri 98.1 1.6E-05 5.5E-10 51.1 8.4 87 8-94 46-137 (177)
40 3vtx_A MAMA; tetratricopeptide 98.1 2E-05 7E-10 50.7 8.9 83 9-91 8-92 (184)
41 3fp2_A TPR repeat-containing p 98.1 9.7E-06 3.3E-10 59.6 8.1 90 5-94 24-115 (537)
42 3uq3_A Heat shock protein STI1 98.1 3.2E-05 1.1E-09 51.1 9.8 87 8-94 141-229 (258)
43 2vq2_A PILW, putative fimbrial 98.1 3.1E-05 1.1E-09 50.2 9.5 80 14-93 50-134 (225)
44 2pl2_A Hypothetical conserved 98.1 1.3E-05 4.6E-10 54.0 7.9 79 15-93 48-139 (217)
45 3qky_A Outer membrane assembly 98.1 2.3E-05 7.8E-10 53.4 9.0 89 6-94 15-119 (261)
46 2ho1_A Type 4 fimbrial biogene 98.1 3.4E-05 1.2E-09 51.5 9.6 87 7-93 38-126 (252)
47 1hh8_A P67PHOX, NCF-2, neutrop 98.1 2.9E-05 1E-09 50.8 9.1 86 9-94 40-143 (213)
48 1p5q_A FKBP52, FK506-binding p 98.1 3.4E-05 1.2E-09 55.7 10.2 86 8-93 149-251 (336)
49 1hh8_A P67PHOX, NCF-2, neutrop 98.1 2.5E-05 8.4E-10 51.2 8.6 85 8-94 8-93 (213)
50 1a17_A Serine/threonine protei 98.1 4.9E-05 1.7E-09 47.3 9.2 86 9-94 50-139 (166)
51 3u4t_A TPR repeat-containing p 98.1 2.7E-05 9.3E-10 52.4 8.5 83 11-93 8-95 (272)
52 1ihg_A Cyclophilin 40; ppiase 98.0 2.4E-05 8.2E-10 57.7 8.7 89 6-94 223-329 (370)
53 2q7f_A YRRB protein; TPR, prot 98.0 5.2E-05 1.8E-09 49.9 9.6 80 13-92 64-145 (243)
54 2q7f_A YRRB protein; TPR, prot 98.0 3.4E-05 1.2E-09 50.8 8.6 85 10-94 95-181 (243)
55 2y4t_A DNAJ homolog subfamily 98.0 4.9E-05 1.7E-09 54.7 9.8 90 5-94 25-116 (450)
56 4eqf_A PEX5-related protein; a 98.0 3.6E-05 1.2E-09 54.3 9.0 86 9-94 68-155 (365)
57 3hym_B Cell division cycle pro 98.0 6E-05 2.1E-09 51.6 9.7 78 16-93 66-146 (330)
58 1fch_A Peroxisomal targeting s 98.0 4.4E-05 1.5E-09 53.4 9.0 86 9-94 67-154 (368)
59 3hym_B Cell division cycle pro 98.0 8.9E-05 3E-09 50.7 10.3 86 9-94 128-215 (330)
60 4ga2_A E3 SUMO-protein ligase 98.0 4.9E-06 1.7E-10 53.4 3.7 77 18-94 9-87 (150)
61 1fch_A Peroxisomal targeting s 98.0 5.7E-05 1.9E-09 52.8 9.4 87 8-94 219-307 (368)
62 3cv0_A Peroxisome targeting si 98.0 6.9E-05 2.4E-09 51.2 9.5 87 8-94 174-262 (327)
63 3ieg_A DNAJ homolog subfamily 98.0 0.0001 3.5E-09 50.7 10.3 83 12-94 126-210 (359)
64 3u4t_A TPR repeat-containing p 98.0 6.5E-05 2.2E-09 50.5 9.1 84 11-94 42-130 (272)
65 3kae_A CDC27, possible protein 98.0 4.4E-05 1.5E-09 53.5 8.3 80 9-94 5-84 (242)
66 2ho1_A Type 4 fimbrial biogene 98.0 0.00011 3.9E-09 48.9 10.1 83 11-93 146-230 (252)
67 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.6E-05 2.3E-09 56.5 9.8 89 6-94 268-373 (457)
68 4i17_A Hypothetical protein; T 98.0 5.2E-05 1.8E-09 50.4 8.3 83 12-94 48-139 (228)
69 3mkr_A Coatomer subunit epsilo 97.9 0.00012 4.1E-09 51.8 10.2 86 5-94 64-152 (291)
70 2kat_A Uncharacterized protein 97.9 3.3E-05 1.1E-09 46.5 6.4 70 24-93 3-74 (115)
71 1na3_A Designed protein CTPR2; 97.9 0.00023 7.8E-09 40.3 9.4 81 6-86 9-91 (91)
72 2vyi_A SGTA protein; chaperone 97.9 9.3E-05 3.2E-09 43.8 7.9 80 9-88 49-130 (131)
73 2vq2_A PILW, putative fimbrial 97.9 0.00014 4.9E-09 47.0 9.4 85 9-93 11-98 (225)
74 2vsy_A XCC0866; transferase, g 97.9 8.9E-05 3.1E-09 56.3 9.5 86 9-94 26-113 (568)
75 1p5q_A FKBP52, FK506-binding p 97.9 0.00012 4.2E-09 52.8 9.8 87 7-93 197-285 (336)
76 3cv0_A Peroxisome targeting si 97.9 0.00014 5E-09 49.6 9.5 86 9-94 209-308 (327)
77 4eqf_A PEX5-related protein; a 97.8 9.7E-05 3.3E-09 52.0 8.6 86 9-94 216-303 (365)
78 1wao_1 Serine/threonine protei 97.8 3.7E-05 1.3E-09 58.4 6.7 77 17-93 17-95 (477)
79 2if4_A ATFKBP42; FKBP-like, al 97.8 3.5E-05 1.2E-09 55.8 6.3 89 6-94 179-286 (338)
80 3qou_A Protein YBBN; thioredox 97.8 0.00029 9.9E-09 49.5 10.9 88 7-94 118-241 (287)
81 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.00011 3.8E-09 49.4 8.3 88 7-94 5-118 (225)
82 2y4t_A DNAJ homolog subfamily 97.8 0.00019 6.3E-09 51.6 9.8 85 10-94 261-351 (450)
83 3fp2_A TPR repeat-containing p 97.8 0.00018 6.1E-09 52.8 9.8 86 9-94 313-400 (537)
84 1ihg_A Cyclophilin 40; ppiase 97.8 0.00023 8E-09 52.4 10.0 86 9-94 276-363 (370)
85 3qky_A Outer membrane assembly 97.8 0.00011 3.9E-09 49.9 7.6 86 9-94 55-170 (261)
86 4gyw_A UDP-N-acetylglucosamine 97.7 0.00019 6.6E-09 57.7 9.8 85 9-93 12-98 (723)
87 2lni_A Stress-induced-phosphop 97.7 0.00028 9.6E-09 42.1 8.3 80 8-87 52-133 (133)
88 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00017 5.9E-09 47.2 7.9 85 8-92 90-176 (198)
89 3ro3_A PINS homolog, G-protein 97.7 0.0002 6.9E-09 43.5 7.5 87 8-94 51-151 (164)
90 3ro3_A PINS homolog, G-protein 97.7 0.00018 6.1E-09 43.8 7.0 89 6-94 9-111 (164)
91 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.00036 1.2E-08 46.7 9.0 86 8-94 79-166 (275)
92 2vsy_A XCC0866; transferase, g 97.6 0.00033 1.1E-08 53.2 9.3 87 8-94 59-150 (568)
93 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0004 1.4E-08 52.2 9.7 86 8-93 319-406 (457)
94 1w3b_A UDP-N-acetylglucosamine 97.6 0.00035 1.2E-08 49.7 8.9 82 12-93 277-360 (388)
95 2e2e_A Formate-dependent nitri 97.6 5.2E-05 1.8E-09 48.7 4.0 79 16-94 20-103 (177)
96 3gyz_A Chaperone protein IPGC; 97.6 3E-05 1E-09 50.7 2.8 82 7-94 9-92 (151)
97 3rkv_A Putative peptidylprolyl 97.6 0.00038 1.3E-08 44.2 7.9 83 8-90 65-150 (162)
98 3ro2_A PINS homolog, G-protein 97.6 0.00087 3E-08 45.2 9.8 89 6-94 5-105 (338)
99 3ma5_A Tetratricopeptide repea 97.6 0.00014 4.6E-09 43.5 5.1 57 9-65 10-67 (100)
100 3edt_B KLC 2, kinesin light ch 97.6 0.0003 1E-08 46.7 7.3 89 6-94 85-191 (283)
101 2gw1_A Mitochondrial precursor 97.6 0.00051 1.7E-08 49.8 8.9 86 9-94 307-394 (514)
102 2hr2_A Hypothetical protein; a 97.5 0.00098 3.4E-08 44.8 9.6 88 7-94 12-124 (159)
103 2xcb_A PCRH, regulatory protei 97.5 0.00094 3.2E-08 41.7 9.0 80 10-89 56-137 (142)
104 3edt_B KLC 2, kinesin light ch 97.5 0.00025 8.5E-09 47.1 6.6 89 6-94 43-149 (283)
105 2r5s_A Uncharacterized protein 97.5 0.00017 5.7E-09 46.7 5.6 87 8-94 8-130 (176)
106 3nf1_A KLC 1, kinesin light ch 97.5 0.00027 9.4E-09 47.8 6.9 88 7-94 154-300 (311)
107 1w3b_A UDP-N-acetylglucosamine 97.5 0.00076 2.6E-08 47.9 9.4 75 18-92 215-291 (388)
108 4abn_A Tetratricopeptide repea 97.5 0.00029 1E-08 53.0 7.5 82 12-93 143-242 (474)
109 1wao_1 Serine/threonine protei 97.5 0.00016 5.6E-09 54.8 6.1 86 9-94 43-132 (477)
110 2vgx_A Chaperone SYCD; alterna 97.5 0.00011 3.6E-09 47.1 4.3 65 30-94 11-77 (148)
111 1na0_A Designed protein CTPR3; 97.5 0.0014 4.9E-08 38.1 9.1 77 9-85 46-124 (125)
112 3nf1_A KLC 1, kinesin light ch 97.5 0.00047 1.6E-08 46.6 7.6 90 5-94 26-133 (311)
113 4gyw_A UDP-N-acetylglucosamine 97.5 0.00068 2.3E-08 54.5 9.5 81 14-94 51-133 (723)
114 4gco_A Protein STI-1; structur 97.5 0.00081 2.8E-08 41.8 7.9 73 9-81 50-124 (126)
115 4a1s_A PINS, partner of inscut 97.5 0.00077 2.6E-08 47.9 8.7 90 5-94 47-148 (411)
116 2xpi_A Anaphase-promoting comp 97.5 0.00068 2.3E-08 50.5 8.6 87 8-94 477-572 (597)
117 3urz_A Uncharacterized protein 97.4 0.00093 3.2E-08 44.5 8.1 53 12-64 60-113 (208)
118 3k9i_A BH0479 protein; putativ 97.4 0.00098 3.4E-08 40.2 7.6 60 6-65 27-87 (117)
119 2l6j_A TPR repeat-containing p 97.4 0.00025 8.4E-09 41.5 4.5 56 39-94 4-60 (111)
120 4abn_A Tetratricopeptide repea 97.4 0.00043 1.5E-08 52.1 6.7 83 12-94 108-201 (474)
121 3ma5_A Tetratricopeptide repea 97.3 0.0018 6.2E-08 38.4 8.1 57 38-94 6-63 (100)
122 3upv_A Heat shock protein STI1 97.3 0.0018 6.3E-08 39.0 8.2 75 9-83 41-123 (126)
123 2yhc_A BAMD, UPF0169 lipoprote 97.3 0.0014 4.9E-08 43.9 8.3 85 10-94 45-169 (225)
124 3ulq_A Response regulator aspa 97.3 0.0013 4.3E-08 47.0 8.1 86 9-94 187-286 (383)
125 1elw_A TPR1-domain of HOP; HOP 97.3 0.0041 1.4E-07 35.8 9.1 73 9-81 41-115 (118)
126 3u3w_A Transcriptional activat 97.3 0.0022 7.4E-08 44.6 9.0 84 11-94 120-218 (293)
127 3sf4_A G-protein-signaling mod 97.3 0.0032 1.1E-07 44.0 9.9 87 8-94 11-109 (406)
128 1ouv_A Conserved hypothetical 97.2 0.0035 1.2E-07 42.5 9.5 80 12-93 12-99 (273)
129 2h6f_A Protein farnesyltransfe 97.2 0.0014 4.7E-08 48.7 7.9 78 16-93 107-187 (382)
130 2kck_A TPR repeat; tetratricop 97.2 0.0006 2.1E-08 39.3 4.7 57 38-94 5-62 (112)
131 3sf4_A G-protein-signaling mod 97.2 0.0022 7.6E-08 44.9 8.4 86 9-94 190-289 (406)
132 2pzi_A Probable serine/threoni 97.2 0.00054 1.9E-08 53.9 5.5 80 11-90 438-519 (681)
133 2pzi_A Probable serine/threoni 97.2 0.00079 2.7E-08 53.0 6.4 79 16-94 401-489 (681)
134 2kc7_A BFR218_protein; tetratr 97.2 0.0016 5.4E-08 37.7 6.3 54 12-65 6-61 (99)
135 1elr_A TPR2A-domain of HOP; HO 97.2 0.0016 5.6E-08 38.3 6.5 79 9-87 41-127 (131)
136 3ro2_A PINS homolog, G-protein 97.1 0.0021 7.1E-08 43.3 7.5 87 8-94 225-325 (338)
137 2xev_A YBGF; tetratricopeptide 97.1 0.0035 1.2E-07 37.4 7.5 57 9-65 42-102 (129)
138 4a1s_A PINS, partner of inscut 97.0 0.0024 8.3E-08 45.3 7.4 87 8-94 225-325 (411)
139 3mkr_A Coatomer subunit epsilo 97.0 0.00075 2.5E-08 47.7 4.6 52 43-94 69-123 (291)
140 3sz7_A HSC70 cochaperone (SGT) 97.0 0.0043 1.5E-07 39.2 7.7 57 9-65 48-105 (164)
141 2h6f_A Protein farnesyltransfe 97.0 0.0013 4.6E-08 48.8 6.0 79 16-94 141-222 (382)
142 1ouv_A Conserved hypothetical 97.0 0.0075 2.6E-07 40.8 9.4 73 19-93 55-135 (273)
143 2qfc_A PLCR protein; TPR, HTH, 97.0 0.0069 2.3E-07 42.0 9.0 84 8-91 157-255 (293)
144 2dba_A Smooth muscle cell asso 96.9 0.0059 2E-07 36.9 7.7 74 7-80 66-141 (148)
145 3ulq_A Response regulator aspa 96.9 0.0037 1.3E-07 44.6 7.6 84 10-93 147-245 (383)
146 3q49_B STIP1 homology and U bo 96.9 0.0066 2.3E-07 36.5 7.7 56 9-64 46-102 (137)
147 2kat_A Uncharacterized protein 96.9 0.0055 1.9E-07 36.4 7.1 57 9-65 22-79 (115)
148 1hxi_A PEX5, peroxisome target 96.9 0.0016 5.6E-08 40.0 4.8 56 39-94 17-73 (121)
149 4gcn_A Protein STI-1; structur 96.9 0.0021 7.1E-08 39.8 5.2 52 43-94 12-64 (127)
150 1na3_A Designed protein CTPR2; 96.9 0.0022 7.5E-08 36.0 4.9 56 39-94 9-65 (91)
151 2qfc_A PLCR protein; TPR, HTH, 96.9 0.023 7.9E-07 39.2 11.0 90 5-94 74-177 (293)
152 3gw4_A Uncharacterized protein 96.8 0.0065 2.2E-07 38.7 7.5 86 9-94 69-169 (203)
153 3gw4_A Uncharacterized protein 96.8 0.0047 1.6E-07 39.4 6.6 89 6-94 26-129 (203)
154 2kc7_A BFR218_protein; tetratr 96.8 0.0018 6E-08 37.5 4.1 53 42-94 3-57 (99)
155 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0023 7.7E-08 38.7 4.7 55 39-93 5-67 (104)
156 3bee_A Putative YFRE protein; 96.8 0.0027 9.2E-08 38.3 5.0 43 22-64 25-68 (93)
157 2r5s_A Uncharacterized protein 96.7 0.0055 1.9E-07 39.3 6.4 74 20-93 88-165 (176)
158 1qqe_A Vesicular transport pro 96.7 0.0083 2.9E-07 41.7 7.8 86 9-94 120-221 (292)
159 3q15_A PSP28, response regulat 96.7 0.013 4.3E-07 41.9 8.9 87 8-94 184-283 (378)
160 3u3w_A Transcriptional activat 96.7 0.036 1.2E-06 38.3 10.8 91 4-94 73-177 (293)
161 3rjv_A Putative SEL1 repeat pr 96.6 0.012 4.1E-07 39.2 7.7 77 14-93 26-110 (212)
162 2if4_A ATFKBP42; FKBP-like, al 96.5 0.0085 2.9E-07 43.1 7.1 75 10-84 234-310 (338)
163 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0078 2.7E-07 36.3 5.8 55 11-65 10-72 (104)
164 3n71_A Histone lysine methyltr 96.4 0.018 6.2E-07 44.3 8.9 90 5-94 350-457 (490)
165 1qqe_A Vesicular transport pro 96.4 0.013 4.5E-07 40.7 7.5 87 8-94 79-180 (292)
166 1zu2_A Mitochondrial import re 96.2 0.0048 1.6E-07 41.4 4.0 76 19-94 15-113 (158)
167 1pc2_A Mitochondria fission pr 96.2 0.023 7.9E-07 37.9 7.2 57 37-93 30-92 (152)
168 3q15_A PSP28, response regulat 96.1 0.071 2.4E-06 37.9 10.1 55 9-63 225-285 (378)
169 2ifu_A Gamma-SNAP; membrane fu 96.0 0.036 1.2E-06 38.7 7.9 84 9-93 79-176 (307)
170 3mv2_B Coatomer subunit epsilo 96.0 0.0098 3.4E-07 43.7 5.0 70 25-94 85-158 (310)
171 3mv2_B Coatomer subunit epsilo 95.8 0.031 1.1E-06 41.0 7.0 88 5-95 135-234 (310)
172 3qwp_A SET and MYND domain-con 95.8 0.07 2.4E-06 40.2 9.0 87 8-94 289-393 (429)
173 1klx_A Cysteine rich protein B 95.7 0.056 1.9E-06 33.8 7.3 73 20-94 39-119 (138)
174 1hz4_A MALT regulatory protein 95.7 0.04 1.4E-06 38.7 7.1 81 14-94 22-115 (373)
175 3n71_A Histone lysine methyltr 95.6 0.089 3E-06 40.5 9.3 81 14-94 317-415 (490)
176 2c2l_A CHIP, carboxy terminus 95.6 0.056 1.9E-06 37.5 7.5 56 9-64 41-97 (281)
177 3bee_A Putative YFRE protein; 95.6 0.03 1E-06 33.6 5.3 58 37-94 4-65 (93)
178 3qww_A SET and MYND domain-con 95.5 0.11 3.7E-06 39.3 9.4 77 18-94 310-404 (433)
179 2xm6_A Protein corresponding t 95.5 0.12 4.1E-06 38.2 9.4 74 19-94 56-137 (490)
180 1nzn_A CGI-135 protein, fissio 95.5 0.14 4.6E-06 33.1 8.5 57 37-93 33-95 (126)
181 3qou_A Protein YBBN; thioredox 95.5 0.038 1.3E-06 38.4 6.3 78 16-93 195-276 (287)
182 2ifu_A Gamma-SNAP; membrane fu 95.4 0.035 1.2E-06 38.8 6.0 80 14-94 124-217 (307)
183 1hz4_A MALT regulatory protein 95.4 0.1 3.5E-06 36.6 8.3 85 10-94 97-196 (373)
184 4f3v_A ESX-1 secretion system 95.2 0.045 1.5E-06 39.6 6.1 51 43-93 175-229 (282)
185 3rjv_A Putative SEL1 repeat pr 95.0 0.092 3.1E-06 34.8 6.8 66 19-84 102-174 (212)
186 4f3v_A ESX-1 secretion system 94.6 0.058 2E-06 39.0 5.4 82 13-94 109-193 (282)
187 2ond_A Cleavage stimulation fa 94.5 0.17 5.8E-06 35.1 7.4 72 23-94 81-156 (308)
188 4g1t_A Interferon-induced prot 94.4 0.21 7.1E-06 35.9 7.8 40 24-63 318-358 (472)
189 1b89_A Protein (clathrin heavy 94.3 0.16 5.3E-06 39.2 7.3 73 9-92 125-197 (449)
190 1y8m_A FIS1; mitochondria, unk 94.2 0.1 3.6E-06 34.5 5.3 58 36-93 36-98 (144)
191 2xm6_A Protein corresponding t 94.1 0.49 1.7E-05 34.8 9.4 42 21-63 166-211 (490)
192 2hr2_A Hypothetical protein; a 93.8 0.12 4.3E-06 34.4 5.2 49 16-64 67-127 (159)
193 3qwp_A SET and MYND domain-con 93.4 0.32 1.1E-05 36.5 7.5 61 5-65 328-397 (429)
194 2ond_A Cleavage stimulation fa 93.3 0.48 1.6E-05 32.7 7.9 18 19-36 112-129 (308)
195 3qww_A SET and MYND domain-con 93.3 0.37 1.3E-05 36.4 7.7 60 6-65 340-408 (433)
196 2ff4_A Probable regulatory pro 93.0 0.42 1.4E-05 35.3 7.6 60 5-64 170-230 (388)
197 1klx_A Cysteine rich protein B 92.8 0.4 1.4E-05 29.8 6.3 70 21-94 10-83 (138)
198 1xi4_A Clathrin heavy chain; a 92.6 0.34 1.2E-05 42.6 7.2 69 18-94 1088-1156(1630)
199 4g1t_A Interferon-induced prot 91.7 0.81 2.8E-05 32.7 7.4 53 13-65 341-398 (472)
200 3e4b_A ALGK; tetratricopeptide 91.6 0.84 2.9E-05 33.8 7.6 62 19-84 264-330 (452)
201 4gns_B Protein CSD3, chitin bi 91.2 1 3.6E-05 36.7 8.4 58 9-66 340-398 (754)
202 3o48_A Mitochondria fission 1 91.2 0.79 2.7E-05 29.9 6.3 57 37-93 38-99 (134)
203 3e4b_A ALGK; tetratricopeptide 90.9 1.5 5.2E-05 32.3 8.5 60 21-83 232-294 (452)
204 4b4t_Q 26S proteasome regulato 90.4 0.48 1.6E-05 33.6 5.2 76 19-94 108-197 (434)
205 2uwj_G Type III export protein 90.2 2.3 8E-05 26.9 9.1 86 3-93 3-89 (115)
206 2p58_C Putative type III secre 89.9 2.5 8.6E-05 26.7 9.7 85 4-93 5-90 (116)
207 3ly7_A Transcriptional activat 89.7 1.3 4.5E-05 33.2 7.2 50 16-65 287-336 (372)
208 4gq2_M Nucleoporin NUP120; bet 89.1 1.4 4.8E-05 36.3 7.6 54 37-93 808-861 (950)
209 4b4t_Q 26S proteasome regulato 89.0 2.1 7.1E-05 30.2 7.6 88 7-94 56-157 (434)
210 1pc2_A Mitochondria fission pr 87.8 0.6 2.1E-05 30.9 3.8 45 21-65 50-97 (152)
211 1xi4_A Clathrin heavy chain; a 87.8 2.2 7.5E-05 37.7 8.1 71 12-94 1055-1127(1630)
212 4g26_A Pentatricopeptide repea 87.7 6.9 0.00024 29.7 10.2 86 9-95 108-198 (501)
213 2ooe_A Cleavage stimulation fa 85.8 2.2 7.5E-05 31.6 6.4 71 24-94 304-378 (530)
214 1zu2_A Mitochondrial import re 85.1 0.92 3.1E-05 30.1 3.6 45 21-65 61-117 (158)
215 4fhn_B Nucleoporin NUP120; pro 84.4 2.4 8.1E-05 35.5 6.5 53 38-93 811-863 (1139)
216 1nzn_A CGI-135 protein, fissio 83.5 2 6.9E-05 27.5 4.6 40 25-64 57-99 (126)
217 1b89_A Protein (clathrin heavy 83.1 3.6 0.00012 31.6 6.6 61 11-74 182-243 (449)
218 3ffl_A Anaphase-promoting comp 82.6 8.8 0.0003 25.7 9.6 70 11-80 68-163 (167)
219 3dra_A Protein farnesyltransfe 80.8 5.8 0.0002 28.4 6.7 73 22-94 202-280 (306)
220 1y8m_A FIS1; mitochondria, unk 80.5 2.9 9.9E-05 27.5 4.6 41 24-64 60-102 (144)
221 1dce_A Protein (RAB geranylger 80.2 11 0.00038 29.0 8.5 78 8-85 111-191 (567)
222 2ooe_A Cleavage stimulation fa 79.4 15 0.00052 27.0 8.8 54 11-65 18-72 (530)
223 1qsa_A Protein (soluble lytic 75.1 17 0.00058 28.8 8.4 80 15-94 261-341 (618)
224 3o48_A Mitochondria fission 1 74.2 3.7 0.00013 26.7 3.7 41 24-64 61-103 (134)
225 3ly7_A Transcriptional activat 74.0 11 0.00038 28.2 6.8 51 44-94 282-332 (372)
226 3u64_A Protein TP_0956; tetrat 73.7 5.7 0.0002 29.1 5.0 72 23-94 180-262 (301)
227 3mv2_A Coatomer subunit alpha; 70.3 5.6 0.00019 29.4 4.3 35 6-40 207-241 (325)
228 4gq2_M Nucleoporin NUP120; bet 66.5 15 0.00051 30.3 6.5 50 12-65 816-866 (950)
229 3mkr_B Coatomer subunit alpha; 64.0 7.5 0.00026 28.7 3.9 35 6-40 198-232 (320)
230 3mkq_A Coatomer beta'-subunit; 59.9 55 0.0019 24.9 9.5 22 10-31 685-706 (814)
231 4gns_B Protein CSD3, chitin bi 58.8 15 0.0005 30.0 5.0 50 46-95 344-394 (754)
232 4fhn_B Nucleoporin NUP120; pro 58.1 25 0.00085 29.4 6.4 51 11-65 817-868 (1139)
233 2cfu_A SDSA1; SDS-hydrolase, l 56.5 19 0.00066 28.5 5.3 61 28-88 438-499 (658)
234 3mkq_B Coatomer subunit alpha; 56.1 42 0.0014 22.4 7.3 20 13-32 12-31 (177)
235 3ph0_C ASCG; type III secretio 55.3 26 0.00087 19.6 6.4 50 9-58 9-59 (61)
236 3dra_A Protein farnesyltransfe 54.0 56 0.0019 23.1 9.8 86 8-93 34-131 (306)
237 3dss_A Geranylgeranyl transfer 53.6 60 0.0021 23.4 8.8 84 10-93 33-131 (331)
238 4g26_A Pentatricopeptide repea 53.4 55 0.0019 24.7 7.3 56 9-64 143-200 (501)
239 3u64_A Protein TP_0956; tetrat 52.2 29 0.001 25.3 5.3 47 19-65 217-266 (301)
240 1dce_A Protein (RAB geranylger 52.0 78 0.0027 24.2 10.8 86 8-93 67-165 (567)
241 3kae_A CDC27, possible protein 51.7 52 0.0018 22.9 6.2 71 19-93 46-135 (242)
242 3txn_A 26S proteasome regulato 48.6 81 0.0028 23.5 8.2 83 11-93 104-202 (394)
243 2wpv_A GET4, UPF0363 protein Y 43.1 89 0.0031 22.5 6.7 23 71-93 133-155 (312)
244 2ynq_A ESSB; membrane protein, 41.9 63 0.0022 21.5 5.3 48 41-88 10-57 (161)
245 3dss_A Geranylgeranyl transfer 41.7 96 0.0033 22.3 7.8 56 9-64 113-170 (331)
246 1e52_A Excinuclease ABC subuni 39.9 47 0.0016 18.5 3.8 34 3-36 23-56 (63)
247 2uwj_G Type III export protein 39.6 69 0.0024 20.1 6.2 53 26-94 7-61 (115)
248 2do5_A Splicing factor 3B subu 33.6 31 0.0011 18.8 2.3 13 2-14 31-43 (58)
249 2yhe_A SEC-alkyl sulfatase; hy 38.3 9.6 0.00033 30.5 0.0 63 28-90 450-513 (668)
250 3mkq_B Coatomer subunit alpha; 30.9 1.2E+02 0.004 20.2 9.3 77 8-95 36-112 (177)
251 3q7a_A Farnesyltransferase alp 30.8 1.5E+02 0.0053 21.5 6.4 74 22-95 224-325 (349)
252 3mkq_A Coatomer beta'-subunit; 30.6 1.7E+02 0.006 22.1 9.4 22 9-30 697-718 (814)
253 1qsa_A Protein (soluble lytic 30.2 88 0.003 24.6 5.2 53 12-64 291-344 (618)
254 2dii_A TFIIH basal transcripti 28.0 63 0.0022 18.0 3.0 27 9-35 29-55 (61)
255 2cfu_A SDSA1; SDS-hydrolase, l 25.2 1.2E+02 0.004 23.9 5.1 47 7-53 450-497 (658)
256 1zbp_A Hypothetical protein VP 25.2 1.6E+02 0.0055 21.0 5.4 52 13-64 4-56 (273)
257 2pm7_A Protein WEB1, protein t 25.0 49 0.0017 24.7 2.8 21 9-29 159-179 (399)
258 2crb_A Nuclear receptor bindin 22.9 52 0.0018 20.1 2.1 15 79-93 22-36 (97)
259 2ff4_A Probable regulatory pro 22.6 2.2E+02 0.0075 20.5 10.5 78 17-94 126-227 (388)
260 1w53_A Phosphoserine phosphata 21.7 1.3E+02 0.0045 17.6 3.8 43 1-44 3-49 (84)
No 1
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=93.98 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch---------hHHHHHHHHhhCCCHHHHHHHHhc----CcccccC--
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA---------DVYMQAQALFLGRHYRRAFHLLNA----SKIVLRD-- 71 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~---------~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~-- 71 (95)
-|++.|+..++.++|++|++.+++++++++ +++ .++++|+++|..|+|.||....++ .+...+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 478899999999999999999999999995 333 569999999999999999988875 2221111
Q ss_pred --------------------hhhHHHHHHHHHHcccHHHHHhcC
Q 040780 72 --------------------LRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 72 --------------------~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
..++|..|+|+.+++++++|+.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 158999999999999999999764
No 2
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.9e-07 Score=57.33 Aligned_cols=90 Identities=17% Similarity=0.062 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+.+...-..+...+.|+.|+-+-++++.++| ++...+.+|.|++..|+|..|+..+++. .+.+.++...+..|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345677777888999999999999999999997 6777888999999999999999988764 23456788899999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..+|++++|+..
T Consensus 83 ~~~~~~~~A~~~ 94 (126)
T 3upv_A 83 IAVKEYASALET 94 (126)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHHhCHHHHHHH
Confidence 999999999864
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=1.8e-07 Score=59.00 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+..+..=..+..+++|+.|+-.-++++.++| ++...+.+|.|++..|++..|+..+++. .+.+.++...+..|.|+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345556666778899999999999999999997 6677778999999999999999988764 34467788899999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..+|+|++|+..
T Consensus 92 ~~~~~~~~A~~~ 103 (126)
T 4gco_A 92 VAMREWSKAQRA 103 (126)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHCCCHHHHHHH
Confidence 999999999864
No 4
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=1.8e-07 Score=59.19 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
+..+.+..+-...+..++|+.|+-+.++++..+| ++...+.+|.|++..|+|..|+..+++. .+.+.++...+..|.|
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3455666777888999999999999999999997 6777888999999999999999988764 2345678888999999
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+..+|++++|+..
T Consensus 96 ~~~~g~~~~A~~~ 108 (142)
T 2xcb_A 96 HLQLGDLDGAESG 108 (142)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 9999999999864
No 5
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=1.6e-07 Score=61.78 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+.+..+-..+...+.|+.|+-+-++++.++| +++..+.+|.|++..|+|..|+...++. .+.+.++...|-.|.|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455566777788899999999999999999997 6777788999999999999999988764 34567888999999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
.++|++++|+..
T Consensus 115 ~~lg~~~eA~~~ 126 (151)
T 3gyz_A 115 LRLKAPLKAKEC 126 (151)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999999864
No 6
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=2.3e-07 Score=54.72 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
.+.+......+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677788889999999999999999999997 6777888999999999999999988764 223457788899999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
.+|++++|+..
T Consensus 84 ~~~~~~~A~~~ 94 (118)
T 1elw_A 84 FLNRFEEAKRT 94 (118)
T ss_dssp HTTCHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 99999999864
No 7
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=3.2e-07 Score=58.97 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
+..+.+..+-..+...++|+.|+-+.++++.++| ++...+.+|.|++..|+|..|+..+++. .+.+.+....+..|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456777888889999999999999999999997 6777888999999999999999988764 2345678889999999
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+..++++++|+..
T Consensus 89 ~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 89 RFDMADYKGAKEA 101 (164)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHccCHHHHHHH
Confidence 9999999999864
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.63 E-value=2.7e-07 Score=69.05 Aligned_cols=90 Identities=32% Similarity=0.495 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~ 84 (95)
.+..++.++..++.+++|+.|+.+.+++....|++.+.+.++.+++..|++.+|..++++......++...+..+.++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 45678999999999999999999999999888988899999999999999999999999864456788899999999999
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
.|++++|+.+
T Consensus 163 ~g~~~~A~~~ 172 (597)
T 2xpi_A 163 LYDWQGALNL 172 (597)
T ss_dssp TTCHHHHHHH
T ss_pred HhhHHHHHHH
Confidence 9999999875
No 9
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=4.2e-07 Score=58.64 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+.+..+-......+.|+.|+-.-++++..+| +++..+.+|.|++..|+|..|+..+++. .+.+.++...+-.|.|+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455566777788999999999999999999997 6777788999999999999999988764 23456788889999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..+|++++|+..
T Consensus 100 ~~~g~~~~A~~~ 111 (148)
T 2vgx_A 100 LQXGELAEAESG 111 (148)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999999864
No 10
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=4.7e-07 Score=54.70 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
....+..+...+...+.|+.|+-+.++++..++ +++..+.+|.+++..|++..|...+++. ...+.++...+..|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 456677888889999999999999999999986 6778888999999999999999988763 22345778889999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..++++++|+..
T Consensus 95 ~~~~~~~~A~~~ 106 (133)
T 2lni_A 95 EAMKDYTKAMDV 106 (133)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHHhhHHHHHHH
Confidence 999999999864
No 11
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=6.2e-07 Score=54.58 Aligned_cols=85 Identities=9% Similarity=-0.029 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc---hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccC---hhhHHHHHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DP---ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRD---LRFRYLAAKC 81 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~---~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~---~~c~yL~A~c 81 (95)
-.....++..++|+.|+-..++++...| ++ +..+.+|.+++..|+|..|...+++. ...+.+ +...+..|.|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455677889999999999999999987 44 58889999999999999999887653 122344 6778999999
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+.++|++++|+..
T Consensus 86 ~~~~g~~~~A~~~ 98 (129)
T 2xev_A 86 QYGEGKNTEAQQT 98 (129)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 9999999999864
No 12
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=6.8e-07 Score=54.93 Aligned_cols=89 Identities=8% Similarity=0.104 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
.+.+...-..+...++|+.|+-..++++..+| ++...+.+|.|++..|++..|...+++. .+.+.++...+..|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45566777888999999999999999999997 5778888999999999999999888764 234567888999999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
.+|++++|+..
T Consensus 89 ~~~~~~~A~~~ 99 (137)
T 3q49_B 89 EMESYDEAIAN 99 (137)
T ss_dssp HTTCHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 99999999864
No 13
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=1.1e-06 Score=52.39 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
....+..+...+...+.|+.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 345666777888899999999999999999986 6677788999999999999999888753 22345678889999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..++++++|+..
T Consensus 91 ~~~~~~~~A~~~ 102 (131)
T 2vyi_A 91 SSLNKHVEAVAY 102 (131)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHhCCHHHHHHH
Confidence 999999999864
No 14
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1e-06 Score=54.27 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK 80 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~ 80 (95)
.+.+......+...++|+.|+-+.++++..+|+ +...+.+|.+++..|+|..|...+++. .+.+.++...+..|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 456777888899999999999999999999886 567788999999999999999888653 233457788899999
Q ss_pred HHHHcccHHHHHhc
Q 040780 81 CLEELKEWEQCLSM 94 (95)
Q Consensus 81 c~~~l~~~~eal~~ 94 (95)
++..++++++|+..
T Consensus 108 ~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 108 ALEKLGRLDQAVLD 121 (148)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 99999999999864
No 15
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=1.5e-06 Score=54.49 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+.+..+-..+...++|+.|+-+.++++..+| ++...+.+|.+++..|+|..|...+++. .+.+.++...+..|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345666777788889999999999999998886 6677788899999999999998877653 22345677788889999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..+|++++|+..
T Consensus 92 ~~~~~~~~A~~~ 103 (166)
T 1a17_A 92 MALGKFRAALRD 103 (166)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHhccHHHHHHH
Confidence 999999998764
No 16
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=7.5e-07 Score=55.61 Aligned_cols=84 Identities=10% Similarity=-0.077 Sum_probs=73.2
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
......+..++++.|+-..++++..+| +++..+.+|.++...|++..|+..+++. .+.+.++...+..|.++..+|++
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 445667889999999999999999997 7788889999999999999999988764 34456788889999999999999
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
++|+..
T Consensus 102 ~~A~~~ 107 (121)
T 1hxi_A 102 NAALAS 107 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 17
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.48 E-value=1.4e-06 Score=52.13 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC-------hhhH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD-------LRFR 75 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~-------~~c~ 75 (95)
..+.+..+...+...+.|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++.- +.+.+ ....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345567777888999999999999999999986 66677889999999999999998887531 11222 6678
Q ss_pred HHHHHHHHHcccHHHHHhc
Q 040780 76 YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 76 yL~A~c~~~l~~~~eal~~ 94 (95)
+..|.++..+|++++|+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~ 101 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHF 101 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHH
Confidence 8899999999999999864
No 18
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=7.1e-07 Score=52.23 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=70.9
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-ccccc--ChhhHHHHHHHHHHc-
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLR--DLRFRYLAAKCLEEL- 85 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~--~~~c~yL~A~c~~~l- 85 (95)
.+...+...++|+.|+-+.++++..++ ++...+.+|.+++..|++..|...+++. ...+. +....+..|.++.++
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 345567789999999999999999996 5667788999999999999999988764 22345 678889999999999
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|++++|+..
T Consensus 91 ~~~~~A~~~ 99 (112)
T 2kck_A 91 GKEVEAEIA 99 (112)
T ss_dssp SCSHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999874
No 19
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.41 E-value=1.2e-06 Score=58.80 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHH----------------HHHHHhhCCCHHHHHHHHhcC-cc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYM----------------QAQALFLGRHYRRAFHLLNAS-KI 67 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~l----------------lA~~l~~~~~~~~A~~ll~~~-~l 67 (95)
++.+-......+..++|+.|+-+.++++.++| +++..++ +|.+++..|+|..|+..+++. .+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555667889999999999999999997 5667778 999999999999999888764 23
Q ss_pred cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 68 VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 68 ~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+.++...+..|.++...|++++|+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~ 110 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRM 110 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456788889999999999999999864
No 20
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=5.3e-06 Score=49.00 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
...+..+...+...++++.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34556677788899999999999999999886 5667788999999999999999888753 122456677788999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
..+++++|+..
T Consensus 89 ~~~~~~~A~~~ 99 (125)
T 1na0_A 89 KQGDYDEAIEY 99 (125)
T ss_dssp HTTCHHHHHHH
T ss_pred HhcCHHHHHHH
Confidence 99999999864
No 21
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.2e-06 Score=51.89 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccC------hhhHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRD------LRFRYL 77 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~------~~c~yL 77 (95)
.+.+..+-..+...++|+.|+-+.++++.++| ++...+.+|.|++..|+|..|...+++. .+.+.+ ....+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566677788899999999999999999997 6778889999999999999999988764 233344 667788
Q ss_pred HHHHHHHcccHHHHHh
Q 040780 78 AAKCLEELKEWEQCLS 93 (95)
Q Consensus 78 ~A~c~~~l~~~~eal~ 93 (95)
.|.+...+|++++|+.
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 8999999888877664
No 22
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=5e-06 Score=54.82 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc----------------hhHHHHHHHHhhCCCHHHHHHHHhcC-c
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DP----------------ADVYMQAQALFLGRHYRRAFHLLNAS-K 66 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~----------------~~~~llA~~l~~~~~~~~A~~ll~~~-~ 66 (95)
..+.+...-..+...+.|+.|+-+-++++.+.+ ++ ...+.+|.|++..|+|..|+..+++. .
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455667777888899999999999999999886 44 56677899999999999998887753 2
Q ss_pred ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 67 IVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 67 l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.+.+....+..|.++..+++|++|+..
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 3356778889999999999999999864
No 23
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=2e-06 Score=55.09 Aligned_cols=90 Identities=12% Similarity=-0.044 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhh------------------cC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAAL------------------TN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~------------------~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
..+.++..-..+...+.|+.|+-.-++.+.+ ++ .+...+-+|.|++..|+|..|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4566777778889999999999999999988 22 2235566799999999999998877653
Q ss_pred -cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 66 -KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 66 -~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+.+.++...|..|.++..+|+|++|+..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 23466788899999999999999999864
No 24
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.35 E-value=3.4e-07 Score=56.14 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=55.9
Q ss_pred hCChhhHHHHHHHHhhh---cC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 19 KHLYSSAIFFADKVAAL---TN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~---~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.++|+.|+-+-++++.+ +| ++...+.+|.+++..|+|..|+..+++. .+.+.++...+..|.|+..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57788888888888888 33 4566778888888888888888877653 2334567788888888888888888876
Q ss_pred c
Q 040780 94 M 94 (95)
Q Consensus 94 ~ 94 (95)
.
T Consensus 83 ~ 83 (117)
T 3k9i_A 83 L 83 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.1e-06 Score=60.99 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
.+..+.+...-..+...++|+.|+-+-++++..+|++...+.+|.|++..|++..|...+++. .+.+.++...+..|.+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 456677888888999999999999999999999998888999999999999999999988763 2345677889999999
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+.++|++++|+..
T Consensus 83 ~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 83 NEGLGKFADAMFD 95 (514)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 9999999999864
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.30 E-value=7.8e-06 Score=52.69 Aligned_cols=84 Identities=11% Similarity=-0.070 Sum_probs=67.3
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
.........++++.|+-..+++..++| +++..+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.++.++|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 344556778888999999999888886 6777888899999999999998887754 23456777888889999999999
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
++|+..
T Consensus 158 ~~A~~~ 163 (184)
T 3vtx_A 158 DEAVKY 163 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 27
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.27 E-value=1.1e-05 Score=47.83 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
..+..-+...++++.|+-+.+++....+ ++...+.+|.+++..|++..|...+++. ...+..+...+..|.++...|+
T Consensus 39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc
Confidence 3445556677888888888888887775 4556667788888888888888777653 1223456667777888888888
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
+++|+..
T Consensus 119 ~~~A~~~ 125 (136)
T 2fo7_A 119 YDEAIEY 125 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.27 E-value=2.1e-06 Score=55.19 Aligned_cols=82 Identities=11% Similarity=0.001 Sum_probs=69.2
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
+-.-+...++|+.|+-+-++++.++| +++..+.+|.+++..|++..|+..+++. .+.+.++...+-.|.++.+.++++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 34557889999999999999999997 6778888999999999999999988764 344677888888999999999987
Q ss_pred HHHh
Q 040780 90 QCLS 93 (95)
Q Consensus 90 eal~ 93 (95)
||+.
T Consensus 117 ~aa~ 120 (150)
T 4ga2_A 117 GRAK 120 (150)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 7653
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.27 E-value=5.6e-06 Score=57.16 Aligned_cols=89 Identities=10% Similarity=0.015 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
++.+..+...++..++|+.|+-..++++..+| +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45667778889999999999999999999997 6788889999999999999999988764 223457788999999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
..|++++|+..
T Consensus 83 ~~~~~~~A~~~ 93 (359)
T 3ieg_A 83 KQGKLDEAEDD 93 (359)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCChHHHHHH
Confidence 99999999864
No 30
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=9.4e-06 Score=57.14 Aligned_cols=88 Identities=8% Similarity=0.108 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
+.+...-..+...++|+.|+-..++++..+| ++...+.+|.|++..|+|..|...+++. .+.+.+....+..|.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566777788899999999999999999997 6777788999999999999999988764 3456678889999999999
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
+|+|++|+..
T Consensus 85 ~g~~~~A~~~ 94 (281)
T 2c2l_A 85 MESYDEAIAN 94 (281)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 9999999864
No 31
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.26 E-value=7.7e-06 Score=54.55 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC--CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN--DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
+.+...-..+...++|+.|+-+-++++.++| ++...+.+|.|++..|+|..|+..+++. .+.+.++...+..|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4455666778899999999999999999994 6677888999999999999999988764 234567788899999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
.+|++++|+..
T Consensus 88 ~~~~~~~A~~~ 98 (228)
T 4i17_A 88 DMKNNQEYIAT 98 (228)
T ss_dssp HTTCHHHHHHH
T ss_pred HcccHHHHHHH
Confidence 99999999874
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.24 E-value=1.2e-05 Score=53.92 Aligned_cols=89 Identities=10% Similarity=-0.145 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
..-+..+..-+...++|+.|+-+.++++..+| +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.++.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 44556667778889999999999999999987 5677788999999999999999988764 123456778888999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
.+|++++|+..
T Consensus 123 ~~g~~~~A~~~ 133 (275)
T 1xnf_A 123 YGGRDKLAQDD 133 (275)
T ss_dssp HTTCHHHHHHH
T ss_pred HhccHHHHHHH
Confidence 99999999864
No 33
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.22 E-value=1.3e-05 Score=47.59 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+...+...+.++.|+-+.+++...++ ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 34556677889999999999999999886 5667778899999999999999988753 122345667788899999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 84 ~~~~A~~~ 91 (136)
T 2fo7_A 84 DYDEAIEY 91 (136)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999864
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.21 E-value=8.7e-06 Score=54.91 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc-
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL- 85 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l- 85 (95)
+..+-......++++.|+-..++++..+| +++..+.+|.++...|++..|...+++. .+.+.++...+..|.++.+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 44555667889999999999999999997 7888899999999999999999988764 23456788899999999999
Q ss_pred ----------ccHHHHHhc
Q 040780 86 ----------KEWEQCLSM 94 (95)
Q Consensus 86 ----------~~~~eal~~ 94 (95)
|++++|+..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccCHHHHHHH
Confidence 999999864
No 35
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.21 E-value=1.4e-05 Score=50.06 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=19.1
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHH
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLL 62 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll 62 (95)
+...+.++.|+-+.+++...+| ++...+.+|.+++..|++..|...+
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 99 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL 99 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3344444444444444444433 2223333344444444444444433
No 36
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.16 E-value=2.5e-05 Score=48.92 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+..-+...++++.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.+.|
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 44456667889999999999999999986 6677788999999999999999988763 223456788899999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 159 ~~~~A~~~ 166 (186)
T 3as5_A 159 RHEEALPH 166 (186)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999864
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.3e-05 Score=51.83 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC-------hhhHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD-------LRFRY 76 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~-------~~c~y 76 (95)
..+.+..+-..+...++|+.|+-+.++++..++++...+.+|.+++..|++..|...+++.- +.+.. +...+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 45667888888999999999999999999988777888999999999999999999887631 11222 57788
Q ss_pred HHHHHHHHcccHHHHHhc
Q 040780 77 LAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 77 L~A~c~~~l~~~~eal~~ 94 (95)
..|.++..++++++|+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~ 101 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEY 101 (258)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHH
Confidence 999999999999999864
No 38
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=2.9e-05 Score=48.47 Aligned_cols=87 Identities=8% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC-------hhhHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD-------LRFRYLA 78 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~-------~~c~yL~ 78 (95)
..+.+=..+..+++|+.|+-+-++++.++| ++...+-+|.|++..|+|..|+..+++.- +.+.+ ..+.+-.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445555678889999999999999999998 45566678999999999999998776531 11111 1245567
Q ss_pred HHHHHHcccHHHHHhc
Q 040780 79 AKCLEELKEWEQCLSM 94 (95)
Q Consensus 79 A~c~~~l~~~~eal~~ 94 (95)
|.++.++++|++|+..
T Consensus 90 g~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQW 105 (127)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 8899999999999863
No 39
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.14 E-value=1.6e-05 Score=51.11 Aligned_cols=87 Identities=8% Similarity=0.058 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHH-HhhCCCH--HHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQA-LFLGRHY--RRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~-l~~~~~~--~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
-+..+-.-+...++|+.|+-+.++++.++| ++...+.+|.+ ++..|++ ..|...+++. ...+.++...+..|.++
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345566677889999999999999999997 67777888999 7799999 9998888753 22356678889999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
...|++++|+..
T Consensus 126 ~~~g~~~~A~~~ 137 (177)
T 2e2e_A 126 FMQANYAQAIEL 137 (177)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcccHHHHHHH
Confidence 999999999864
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.14 E-value=2e-05 Score=50.66 Aligned_cols=83 Identities=11% Similarity=-0.027 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
.-.+=.-+..+++|+.|+-+-++++.++| +++..+.+|.+++..|++..|...+++. ...+.++...+..|.++...+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence 33444556778888888888888888886 6667777888888888888887766542 111223333334444444444
Q ss_pred cHHHH
Q 040780 87 EWEQC 91 (95)
Q Consensus 87 ~~~ea 91 (95)
+++++
T Consensus 88 ~~~~a 92 (184)
T 3vtx_A 88 EKQAA 92 (184)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 44433
No 41
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.13 E-value=9.7e-06 Score=59.58 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+.+...-..+...++|+.|+-+-++++..+| ++...+.+|.|++..|++..|...+++. .+.+.++...+..|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456778888899999999999999999999997 7778888999999999999999988764 23456788899999999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..+|++++|+..
T Consensus 104 ~~~g~~~~A~~~ 115 (537)
T 3fp2_A 104 ESLGNFTDAMFD 115 (537)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999999864
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.12 E-value=3.2e-05 Score=51.13 Aligned_cols=87 Identities=16% Similarity=0.049 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+..-+...+.|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 344556667889999999999999999997 6777888999999999999999988764 22345677888899999999
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|++++|+..
T Consensus 221 g~~~~A~~~ 229 (258)
T 3uq3_A 221 KEYASALET 229 (258)
T ss_dssp TCHHHHHHH
T ss_pred hhHHHHHHH
Confidence 999999864
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.12 E-value=3.1e-05 Score=50.18 Aligned_cols=80 Identities=4% Similarity=-0.133 Sum_probs=38.5
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhC-CCHHHHHHHHhcCc---ccccChhhHHHHHHHHHHcccH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLG-RHYRRAFHLLNASK---IVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~-~~~~~A~~ll~~~~---l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
.-+...+.++.|+-+.++++..+| ++...+.+|.+++.. |++..|...+++.- .........+..|.++.+.|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 334445555555555555555553 333444455555555 55555555444321 1111234445555555555555
Q ss_pred HHHHh
Q 040780 89 EQCLS 93 (95)
Q Consensus 89 ~eal~ 93 (95)
++|+.
T Consensus 130 ~~A~~ 134 (225)
T 2vq2_A 130 GLAEA 134 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.11 E-value=1.3e-05 Score=53.96 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=40.9
Q ss_pred HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhC-----------CCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLG-----------RHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~-----------~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
-+...+.++.|+-..++++.++| +++..+.+|.++... |++.+|...+++. .+.+.++...+..|.+
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555555555555554 344445555555555 5555555554432 1223344445555555
Q ss_pred HHHcccHHHHHh
Q 040780 82 LEELKEWEQCLS 93 (95)
Q Consensus 82 ~~~l~~~~eal~ 93 (95)
+..+|++++|+.
T Consensus 128 ~~~~g~~~~A~~ 139 (217)
T 2pl2_A 128 YALLGERDKAEA 139 (217)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCChHHHHH
Confidence 555555555543
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.10 E-value=2.3e-05 Score=53.43 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-C---chhHHHHHHHHhhCCCHHHHHHHHhcC----cccccChhhHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-D---PADVYMQAQALFLGRHYRRAFHLLNAS----KIVLRDLRFRYL 77 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~---~~~~~llA~~l~~~~~~~~A~~ll~~~----~l~~~~~~c~yL 77 (95)
.+.+-..-..++..++|+.|+-+-++++...| + ++..+.+|.|++..|+|..|+..+++. +-....+...|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 44566677788999999999999999999987 4 567899999999999999999988763 111233567889
Q ss_pred HHHHHHH--------cccHHHHHhc
Q 040780 78 AAKCLEE--------LKEWEQCLSM 94 (95)
Q Consensus 78 ~A~c~~~--------l~~~~eal~~ 94 (95)
.|.|++. .|++++|+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHH
Confidence 9999999 9999999864
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.10 E-value=3.4e-05 Score=51.49 Aligned_cols=87 Identities=11% Similarity=-0.046 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
+.+..+...+...++++.|+-+.++++..++ ++...+.+|.+++..|++..|...+++. ...+.+....+..|.++..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 3444555556666666666666666666664 4455556666666666666666655542 1122344555556666666
Q ss_pred cccHHHHHh
Q 040780 85 LKEWEQCLS 93 (95)
Q Consensus 85 l~~~~eal~ 93 (95)
.|++++|+.
T Consensus 118 ~g~~~~A~~ 126 (252)
T 2ho1_A 118 QKRYEEAYQ 126 (252)
T ss_dssp TTCHHHHHH
T ss_pred HhHHHHHHH
Confidence 666666654
No 47
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.09 E-value=2.9e-05 Score=50.79 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-----------------cccc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-----------------IVLR 70 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-----------------l~~~ 70 (95)
+..+..-+...++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|+..+++.- ....
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 119 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 119 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEE
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCcc
Confidence 34445556778888888888888888875 55666777888888888888877765431 1112
Q ss_pred ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 71 DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.....+..|.++.++|++++|+..
T Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 120 ACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHccCHHHHHHH
Confidence 336677788888888888888753
No 48
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.09 E-value=3.4e-05 Score=55.72 Aligned_cols=86 Identities=9% Similarity=0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----------------hhHHHHHHHHhhCCCHHHHHHHHhcC-ccccc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----------------ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLR 70 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----------------~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~ 70 (95)
.+..+-..+...++|+.|+-.-++++.+.|+. ...+.+|.|++..|+|..|+..+++. .+.+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34445555566667777777777776666532 45555677777777777776665543 12334
Q ss_pred ChhhHHHHHHHHHHcccHHHHHh
Q 040780 71 DLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
++...+..|.++..+++|++|+.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~ 251 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARA 251 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666666677777777766654
No 49
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.09 E-value=2.5e-05 Score=51.16 Aligned_cols=85 Identities=7% Similarity=-0.070 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
.+...-..+...+.|+.|+-..+++. .+++...+.+|.+++..|+|..|+..+++. .+.+.++...+..|.++..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 44556677889999999999999984 567788899999999999999999988764 233567788889999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 86 ~~~~A~~~ 93 (213)
T 1hh8_A 86 KYDLAIKD 93 (213)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999864
No 50
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.06 E-value=4.9e-05 Score=47.33 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH--HHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC--LEE 84 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c--~~~ 84 (95)
+..+..-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++. .+.+.+.......+.+ ..+
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 129 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 129 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44455667889999999999999999997 6778889999999999999999988764 1223455555455555 778
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
.+++++|+..
T Consensus 130 ~~~~~~A~~~ 139 (166)
T 1a17_A 130 QKAFERAIAG 139 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8999999864
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.05 E-value=2.7e-05 Score=52.42 Aligned_cols=83 Identities=13% Similarity=-0.037 Sum_probs=47.0
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccC----hhhHHHHHHHHHHc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRD----LRFRYLAAKCLEEL 85 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~----~~c~yL~A~c~~~l 85 (95)
.....+...++|+.|+-..++++..+| +++..+.+|.+++..|+|..|...+++.--...+ ..+.+..|.++...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334455566666666666666666664 4556666666666666666666655542111111 22345566666666
Q ss_pred ccHHHHHh
Q 040780 86 KEWEQCLS 93 (95)
Q Consensus 86 ~~~~eal~ 93 (95)
|++++|+.
T Consensus 88 ~~~~~A~~ 95 (272)
T 3u4t_A 88 GQDSLAIQ 95 (272)
T ss_dssp TCHHHHHH
T ss_pred ccHHHHHH
Confidence 66666654
No 52
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=2.4e-05 Score=57.73 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhh----------------hcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAA----------------LTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KI 67 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a----------------~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l 67 (95)
.+.+..+-..+...++|+.|+-.-++++. +++ .+...+.+|.|++..|+|..|+..+++. .+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 33455556666677777777777777766 332 3345556677777777777777666543 22
Q ss_pred cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 68 VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 68 ~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+.+....|..|.++..+++|++|+..
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~ 329 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALAD 329 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHH
Confidence 344566667777777777777777653
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.04 E-value=5.2e-05 Score=49.93 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
..-+...++++.|+-..+++....+ ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|++++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 3334444555555555555544443 3333344455555555555554444332 1112233444444455555555544
Q ss_pred HH
Q 040780 91 CL 92 (95)
Q Consensus 91 al 92 (95)
|+
T Consensus 144 A~ 145 (243)
T 2q7f_A 144 AL 145 (243)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.04 E-value=3.4e-05 Score=50.83 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
..+..-+...++++.|+-+.+++....+ +++..+.+|.+++..|++..|...+++. ...+.++...+..|.++.+.|+
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence 3344555666777777777777777665 4555566677777777777776666542 1123445566666667777777
Q ss_pred HHHHHhc
Q 040780 88 WEQCLSM 94 (95)
Q Consensus 88 ~~eal~~ 94 (95)
+++|+..
T Consensus 175 ~~~A~~~ 181 (243)
T 2q7f_A 175 LDEALSQ 181 (243)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 55
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.02 E-value=4.9e-05 Score=54.72 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~ 82 (95)
..+.+..+...+...++|+.|+-+-++++..+| ++...+.+|.+++..|++..|...+++. .+.+.+....+..|.++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 345677788889999999999999999999986 6778888999999999999999988763 12345677888899999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
.++|++++|+..
T Consensus 105 ~~~g~~~~A~~~ 116 (450)
T 2y4t_A 105 LKQGKLDEAEDD 116 (450)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999999864
No 56
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.02 E-value=3.6e-05 Score=54.27 Aligned_cols=86 Identities=8% Similarity=-0.026 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+-.....+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++..+|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 44556778889999999999999999997 6778889999999999999999988764 233566788899999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 148 ~~~~A~~~ 155 (365)
T 4eqf_A 148 HQQDACEA 155 (365)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999864
No 57
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.01 E-value=6e-05 Score=51.56 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=37.5
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC-CHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGR-HYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~-~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
....++++.|+-+.+++...+| ++...+.+|.+++..| ++..|...+++. .+.+.++...+..|.++...|++++|+
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555555555555543 3444445555555555 555555544432 112233444445555555555555554
Q ss_pred h
Q 040780 93 S 93 (95)
Q Consensus 93 ~ 93 (95)
.
T Consensus 146 ~ 146 (330)
T 3hym_B 146 A 146 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.00 E-value=4.4e-05 Score=53.41 Aligned_cols=86 Identities=6% Similarity=-0.114 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+-.+...+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++...|
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 33556677889999999999999999986 6778888999999999999999988764 233457788889999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 147 ~~~~A~~~ 154 (368)
T 1fch_A 147 LQRQACEI 154 (368)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999864
No 59
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.99 E-value=8.9e-05 Score=50.70 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+..-+...++++.|+-..+++....| ++...+.+|.++...|++..|...+++. ...+.++...+..|.++...|
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 34455556677777777777777777775 4566667777777777777777776653 223455666777777888888
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 208 ~~~~A~~~ 215 (330)
T 3hym_B 208 EWKTAEKW 215 (330)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 88777653
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.99 E-value=4.9e-06 Score=53.41 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=64.5
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.++.++.|+-..++....+| ++...|.+|.+|+..|+|..|+..+++. .+.+.++...+..|.|+.++|++++|+..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 35667888888888877775 5667789999999999999999988764 34567888999999999999999999864
No 61
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.99 E-value=5.7e-05 Score=52.83 Aligned_cols=87 Identities=13% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+..-+...++++.|+-+.++++.++| ++...+.+|.++...|++..|...+++. .+.+.++...+..|.++.++
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 345566677788999999999999998886 5677788899999999999998888763 22345677888889999999
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|++++|+..
T Consensus 299 g~~~~A~~~ 307 (368)
T 1fch_A 299 GAHREAVEH 307 (368)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999998764
No 62
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.98 E-value=6.9e-05 Score=51.18 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+..-+...++++.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.++
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 344556667889999999999999999986 5667788899999999999999888763 22345677888899999999
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|++++|+..
T Consensus 254 g~~~~A~~~ 262 (327)
T 3cv0_A 254 SQYDLAAKQ 262 (327)
T ss_dssp TCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 999999864
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.97 E-value=0.0001 Score=50.71 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=72.1
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
....+...++++.|+-+-+++....| +++..+.+|.++...|++..|...+++. ...+.++...+..|.++...|+++
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 35778899999999999999999997 6777888999999999999999988764 234567888999999999999999
Q ss_pred HHHhc
Q 040780 90 QCLSM 94 (95)
Q Consensus 90 eal~~ 94 (95)
+|+..
T Consensus 206 ~A~~~ 210 (359)
T 3ieg_A 206 LSLSE 210 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.97 E-value=6.5e-05 Score=50.52 Aligned_cols=84 Identities=8% Similarity=-0.079 Sum_probs=58.9
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcCCchh----HHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTNDPAD----VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~----~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
.+..-+...++|+.|+-+.++++...++++. .+.+|.++...|++..|+..+++. ...+.++...+..|.++...
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 3444567778888888888888774333333 577888888888888888777653 12344566777788888888
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|++++|+..
T Consensus 122 ~~~~~A~~~ 130 (272)
T 3u4t_A 122 GNFPLAIQY 130 (272)
T ss_dssp TCHHHHHHH
T ss_pred cCHHHHHHH
Confidence 888888754
No 65
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.97 E-value=4.4e-05 Score=53.50 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
+..-|..|+.--.|+||+|++--+.+ ..++--.+++.++|.+|+|.||.-++.+- ...-..|-.+.|+.++++|
T Consensus 5 ~~~kI~Ks~kY~dYdt~~fLsa~L~~--~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdY 78 (242)
T 3kae_A 5 LIGKICKSIRYRDYETAIFLAACLLP--CKPEYRMLMSIVLYLNGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDY 78 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHcc--CChHHHhhhhhhhhhcchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHH
Confidence 45567788889999999999977654 35588899999999999999999999884 3456778899999999999
Q ss_pred HHHHhc
Q 040780 89 EQCLSM 94 (95)
Q Consensus 89 ~eal~~ 94 (95)
..|+..
T Consensus 79 kkA~~~ 84 (242)
T 3kae_A 79 KKAIKS 84 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 66
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.96 E-value=0.00011 Score=48.88 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=45.1
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
.+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.+....+..+.++.+.|++
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 334445555666666666666665554 3445555566666666666665555442 11223444555556666666666
Q ss_pred HHHHh
Q 040780 89 EQCLS 93 (95)
Q Consensus 89 ~eal~ 93 (95)
++|+.
T Consensus 226 ~~A~~ 230 (252)
T 2ho1_A 226 DTAAS 230 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 67
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=6.6e-05 Score=56.48 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----------------hhHHHHHHHHhhCCCHHHHHHHHhcC-ccc
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----------------ADVYMQAQALFLGRHYRRAFHLLNAS-KIV 68 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----------------~~~~llA~~l~~~~~~~~A~~ll~~~-~l~ 68 (95)
...++..-..+...++|+.|+-.-++++.+.++. ...+.+|.|++..|+|..|+..+++. .+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455566667777888888888888888887643 45566788888888888888777653 233
Q ss_pred ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 69 LRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 69 ~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.+....|-.|.++..+++|++|+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~ 373 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGD 373 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 45677778888888888888888753
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.95 E-value=5.2e-05 Score=50.40 Aligned_cols=83 Identities=10% Similarity=-0.046 Sum_probs=68.6
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh-------hhHHHHHHHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL-------RFRYLAAKCL 82 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~-------~c~yL~A~c~ 82 (95)
+-.-+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++ ...+..|.+.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence 45567789999999999999999997 5667888999999999999999988764 1223444 4577889999
Q ss_pred HHcccHHHHHhc
Q 040780 83 EELKEWEQCLSM 94 (95)
Q Consensus 83 ~~l~~~~eal~~ 94 (95)
..+|++++|+..
T Consensus 128 ~~~~~~~~A~~~ 139 (228)
T 4i17_A 128 QQAGNIEKAEEN 139 (228)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHhccHHHHHHH
Confidence 999999999864
No 69
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.92 E-value=0.00012 Score=51.81 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--C-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--N-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC 81 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c 81 (95)
...-++.+.......+.++.|+-.-+++++.. | ++...+.+|.++...|++..|...+++ +.++.+.+..|++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 34567778888888899999999999998764 5 566778889999999999999999998 4678899999999
Q ss_pred HHHcccHHHHHhc
Q 040780 82 LEELKEWEQCLSM 94 (95)
Q Consensus 82 ~~~l~~~~eal~~ 94 (95)
+.++|++++|+..
T Consensus 140 ~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 140 LLKLDRLDLARKE 152 (291)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHH
Confidence 9999999999864
No 70
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=3.3e-05 Score=46.54 Aligned_cols=70 Identities=9% Similarity=-0.063 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 24 SAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 24 ~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.|+-.-++++..+| ++...+.+|.+++..|++..|...+++. .+.+.+....+..|.++..+|++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445555555554 4455556666666666666666655442 1223344555566666666666666654
No 71
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=0.00023 Score=40.29 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
...+..+-..+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455666778899999999999999999986 6777889999999999999999988764 223456666677777766
Q ss_pred Hcc
Q 040780 84 ELK 86 (95)
Q Consensus 84 ~l~ 86 (95)
++|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 72
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.89 E-value=9.3e-05 Score=43.78 Aligned_cols=80 Identities=9% Similarity=-0.039 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
...+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++. .+.+.+....+..+.++.+++
T Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 34455667889999999999999999986 5778888999999999999999988764 233456778888999999888
Q ss_pred cH
Q 040780 87 EW 88 (95)
Q Consensus 87 ~~ 88 (95)
++
T Consensus 129 ~~ 130 (131)
T 2vyi_A 129 EA 130 (131)
T ss_dssp TC
T ss_pred cC
Confidence 75
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.89 E-value=0.00014 Score=46.98 Aligned_cols=85 Identities=7% Similarity=-0.039 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc-
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL- 85 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l- 85 (95)
+..+...+...++++.|+-+.++++..+| +++..+.+|.++...|++..|...+++. ...+.+....+..|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 34444455555555555555555555554 3444445555555555555555555432 11123344445555555555
Q ss_pred ccHHHHHh
Q 040780 86 KEWEQCLS 93 (95)
Q Consensus 86 ~~~~eal~ 93 (95)
|++++|+.
T Consensus 91 ~~~~~A~~ 98 (225)
T 2vq2_A 91 NRPAESMA 98 (225)
T ss_dssp CCHHHHHH
T ss_pred CcHHHHHH
Confidence 55555544
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.88 E-value=8.9e-05 Score=56.30 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+-.-+...++|+.|+-..++++.++| +++..+.+|.+++..|++..|...+++. .+.+.+....+..|.++.++|
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 34445556667777777777777777775 4556666777777777777777766543 122345566677777777777
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 106 ~~~~A~~~ 113 (568)
T 2vsy_A 106 QAEAAAAA 113 (568)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77777653
No 75
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.88 E-value=0.00012 Score=52.78 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
.-+..+-.-++..++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+....+..+.++.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4455566677889999999999999999997 7888999999999999999999988764 2345677888999999999
Q ss_pred cccHHHHHh
Q 040780 85 LKEWEQCLS 93 (95)
Q Consensus 85 l~~~~eal~ 93 (95)
+++++++..
T Consensus 277 ~~~~~~a~~ 285 (336)
T 1p5q_A 277 IRRQLAREK 285 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998854
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.87 E-value=0.00014 Score=49.56 Aligned_cols=86 Identities=8% Similarity=-0.075 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc------------Chhh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR------------DLRF 74 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~------------~~~c 74 (95)
+..+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++.- +.+. ....
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 45566677889999999999999999986 67788889999999999999998887531 1222 4677
Q ss_pred HHHHHHHHHHcccHHHHHhc
Q 040780 75 RYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..|.++.++|++++|+.+
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 88899999999999999865
No 77
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.85 E-value=9.7e-05 Score=52.04 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+..-+...+.++.|+-+.++++...| ++...+.+|.++...|++..|...+++. .+.+.++...+..|.++.++|
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 44455667778899999999999988886 5667778899999999999998887753 223456777888899999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 296 ~~~~A~~~ 303 (365)
T 4eqf_A 296 AYREAVSN 303 (365)
T ss_dssp CCHHHHHH
T ss_pred CHHHHHHH
Confidence 99988764
No 78
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=3.7e-05 Score=58.40 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=49.2
Q ss_pred HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
..+++|+.|+-..++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.++...+..|.++.++|++++|+.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456667777777777777665 4555666677777777777776666543 2234455666666777777777777664
No 79
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=3.5e-05 Score=55.80 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch------------------hHHHHHHHHhhCCCHHHHHHHHhcC-c
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA------------------DVYMQAQALFLGRHYRRAFHLLNAS-K 66 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~------------------~~~llA~~l~~~~~~~~A~~ll~~~-~ 66 (95)
...++..-..+...++|+.|+-.-++++.+.++.. ..+.+|.|++..|+|..|+..+++. .
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666677788889999999999888876422 4567899999999999998877653 2
Q ss_pred ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 67 IVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 67 l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.+.+....|-.|.++..+++|++|+..
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~ 286 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDD 286 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3345677888889999999999998764
No 80
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.83 E-value=0.00029 Score=49.46 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-------------------
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK------------------- 66 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~------------------- 66 (95)
+.+...-...+..+.++.|+-.-++++..+| +++..+.+|.++...|++..|...+++..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 3445566677899999999999999999997 67788899999999999999998887631
Q ss_pred ----------------ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 67 ----------------IVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 67 ----------------l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+.++..++-.|.++...|++++|+..
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~ 241 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALEL 241 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence 1234566788889999999999999875
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.82 E-value=0.00011 Score=49.43 Aligned_cols=88 Identities=7% Similarity=-0.045 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh---hhHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL---RFRYLA 78 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~---~c~yL~ 78 (95)
+.+-......+..++|+.|+-.-++++...|+ ++..+.+|.+++..|+|..|+..+++. ...+.++ ...|..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34455667789999999999999999998863 257899999999999999999887653 1122333 367888
Q ss_pred HHHHHH------------------cccHHHHHhc
Q 040780 79 AKCLEE------------------LKEWEQCLSM 94 (95)
Q Consensus 79 A~c~~~------------------l~~~~eal~~ 94 (95)
|.|..+ .|++++|+..
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 118 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD 118 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence 998886 4678888754
No 82
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.82 E-value=0.00019 Score=51.64 Aligned_cols=85 Identities=6% Similarity=-0.038 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTNDP-----ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~ 83 (95)
......+...++++.|+-+-++++...|+. ...+.+|.++...|++..|...+++. .+.+.++...+..|.++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344778889999999999999999998752 35677899999999999999998864 233557788899999999
Q ss_pred HcccHHHHHhc
Q 040780 84 ELKEWEQCLSM 94 (95)
Q Consensus 84 ~l~~~~eal~~ 94 (95)
+.|++++|+..
T Consensus 341 ~~~~~~~A~~~ 351 (450)
T 2y4t_A 341 IEEMYDEAIQD 351 (450)
T ss_dssp HTTCHHHHHHH
T ss_pred HhcCHHHHHHH
Confidence 99999999864
No 83
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.81 E-value=0.00018 Score=52.78 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+..-+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 44555667788899999999999998886 6777888899999999999998888653 223456677888899999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 393 ~~~~A~~~ 400 (537)
T 3fp2_A 393 DFDTAIKQ 400 (537)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998764
No 84
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=0.00023 Score=52.39 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+-.-++..++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......+.+..+++
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34455567889999999999999999996 6788899999999999999999988764 234567788899999999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
+++++...
T Consensus 356 ~~~~a~k~ 363 (370)
T 1ihg_A 356 AQKDKEKA 363 (370)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998754
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.76 E-value=0.00011 Score=49.94 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-C---chhHHHHHHHHhh--------CCCHHHHHHHHhcCc-ccccChhhH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-D---PADVYMQAQALFL--------GRHYRRAFHLLNASK-IVLRDLRFR 75 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~---~~~~~llA~~l~~--------~~~~~~A~~ll~~~~-l~~~~~~c~ 75 (95)
+-.+-.-+...+.|+.|+-+-++++...| + ++..|.+|.|++. .|++..|+..+++.- ..+.++...
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 34455567889999999999999999986 3 4468899999999 999999999887531 112233333
Q ss_pred -----------------HHHHHHHHHcccHHHHHhc
Q 040780 76 -----------------YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 76 -----------------yL~A~c~~~l~~~~eal~~ 94 (95)
+..|.++.+.|+|++|+..
T Consensus 135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7789999999999999864
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.75 E-value=0.00019 Score=57.67 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+=.-+.++++|+.|+-.-+|++.++| +++..+.+|.+|...|++..|+..+++. .+...+....+-.|.++.++|
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33444445566666666666666666665 4455555666666666666666655542 223344555555666666666
Q ss_pred cHHHHHh
Q 040780 87 EWEQCLS 93 (95)
Q Consensus 87 ~~~eal~ 93 (95)
++++|+.
T Consensus 92 ~~~~A~~ 98 (723)
T 4gyw_A 92 DVQGALQ 98 (723)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6666654
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.73 E-value=0.00028 Score=42.09 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+..-+...++++.|+.+.++++..++ ++...+.+|.+++..|++..|...+++. ...+.+....+..+.+....
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 344555667889999999999999999986 6778889999999999999999988764 22345567778888888776
Q ss_pred cc
Q 040780 86 KE 87 (95)
Q Consensus 86 ~~ 87 (95)
++
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.73 E-value=0.00017 Score=47.25 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+-.-++..++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......+.|...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 344555667889999999999999999996 6788899999999999999999988764 23456778888999999999
Q ss_pred ccHHHHH
Q 040780 86 KEWEQCL 92 (95)
Q Consensus 86 ~~~~eal 92 (95)
++.+++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 8887765
No 89
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.0002 Score=43.53 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChh
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLR 73 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~ 73 (95)
-+..+-.-+...++|+.|+-+.++.+.+.+ + ....+.+|.+++..|++..|...+++. +.......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445566677788899999999998887763 2 235667788999999998888777543 11112245
Q ss_pred hHHHHHHHHHHcccHHHHHhc
Q 040780 74 FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.+..|.++...|++++|+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHH
Confidence 677788888899999888754
No 90
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.00018 Score=43.78 Aligned_cols=89 Identities=7% Similarity=0.039 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-c------hhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccC
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-P------ADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRD 71 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~------~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~ 71 (95)
..-+..+-.-+...++|+.|+-+.++.+.+.+. + ...+.+|.+++..|++..|...+++.- -....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 334556667778899999999999999988742 1 267788999999999999998887531 11112
Q ss_pred hhhHHHHHHHHHHcccHHHHHhc
Q 040780 72 LRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 72 ~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+.+..|.++...+++++|+..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~ 111 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDY 111 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 45677889999999999999864
No 91
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.68 E-value=0.00036 Score=46.66 Aligned_cols=86 Identities=15% Similarity=-0.095 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+..-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++.- +.+.+..... ....+...
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 157 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQK 157 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHh
Confidence 344566677889999999999999999997 68888999999999999999999887642 2233333333 33444777
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
+++++|+..
T Consensus 158 ~~~~~A~~~ 166 (275)
T 1xnf_A 158 LDEKQAKEV 166 (275)
T ss_dssp HCHHHHHHH
T ss_pred cCHHHHHHH
Confidence 889888764
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.65 E-value=0.00033 Score=53.17 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+-.-+...++++.|+-+.++++.++| +++..+.+|.+++..|++..|...+++. .+...+....+..|.++..+
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 344556677889999999999999999997 6778889999999999999999988764 23345677888999999999
Q ss_pred ---ccHHHHHhc
Q 040780 86 ---KEWEQCLSM 94 (95)
Q Consensus 86 ---~~~~eal~~ 94 (95)
+++++|+..
T Consensus 139 ~~~g~~~~A~~~ 150 (568)
T 2vsy_A 139 CDWRALDVLSAQ 150 (568)
T ss_dssp TCCTTHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999998764
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=0.0004 Score=52.18 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
-+..+-.-++..++|+.|+-..++++.++| ++...|.+|.+++..|+|..|...+++. .+.+.+....+..+.+..++
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 344556667889999999999999999996 7888999999999999999999988764 24455667888899999999
Q ss_pred ccHHHHHh
Q 040780 86 KEWEQCLS 93 (95)
Q Consensus 86 ~~~~eal~ 93 (95)
++++++..
T Consensus 399 ~~~~~a~~ 406 (457)
T 1kt0_A 399 KEHNERDR 406 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 94
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.00035 Score=49.69 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=48.4
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
+..-+...++++.|+-+-++++..+| +++....+|.++...|++..|...+++. .+.+.+....+..|.++.+.|+++
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 34445556666666666666666664 4455555666666666666666666543 122334455566666666666666
Q ss_pred HHHh
Q 040780 90 QCLS 93 (95)
Q Consensus 90 eal~ 93 (95)
+|+.
T Consensus 357 ~A~~ 360 (388)
T 1w3b_A 357 EALM 360 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.62 E-value=5.2e-05 Score=48.65 Aligned_cols=79 Identities=6% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH-HHHcccH--HH
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC-LEELKEW--EQ 90 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c-~~~l~~~--~e 90 (95)
.+..++|+.|+-+.++++..+| +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.+ +...+++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3467899999999999999997 6778889999999999999999988764 2334567788888999 7789998 98
Q ss_pred HHhc
Q 040780 91 CLSM 94 (95)
Q Consensus 91 al~~ 94 (95)
|+..
T Consensus 100 A~~~ 103 (177)
T 2e2e_A 100 TRAM 103 (177)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.62 E-value=3e-05 Score=50.73 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
+.....+.+.+..+.. -++++.++| +++..|.+|.+++..|+|..|...+++. .+.+.++...+-.|.|+..
T Consensus 9 ~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 9 ESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82 (151)
T ss_dssp CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444555555554432 244555665 6778999999999999999999988764 2346778888899999999
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
+|+|++|+..
T Consensus 83 ~g~~~~Ai~~ 92 (151)
T 3gyz_A 83 KEQFQQAADL 92 (151)
T ss_dssp TTCHHHHHHH
T ss_pred HccHHHHHHH
Confidence 9999999874
No 97
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.61 E-value=0.00038 Score=44.19 Aligned_cols=83 Identities=10% Similarity=-0.077 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh-hhHHHHHHHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL-RFRYLAAKCLEE 84 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~-~c~yL~A~c~~~ 84 (95)
-+..+-.-++..+.|+.|+-++++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+. ...-..+.+..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344555667889999999999999999997 6788899999999999999999988764 2334444 455566666666
Q ss_pred cccHHH
Q 040780 85 LKEWEQ 90 (95)
Q Consensus 85 l~~~~e 90 (95)
++++++
T Consensus 145 ~~~~~~ 150 (162)
T 3rkv_A 145 RAEKKA 150 (162)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 655544
No 98
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.57 E-value=0.00087 Score=45.21 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChh
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP-----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLR 73 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~ 73 (95)
...+...-..+...++|+.|+-+.++++...|+. ...+.+|.+++..|++..|...+++. +.......
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566677889999999999999999998642 45668899999999999999887653 11123355
Q ss_pred hHHHHHHHHHHcccHHHHHhc
Q 040780 74 FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+..|.++...|++++|+..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~ 105 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVC 105 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHH
Confidence 677889999999999999864
No 99
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00014 Score=43.47 Aligned_cols=57 Identities=7% Similarity=-0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+..+-.-+...++|+.|+-+-++++.++| +++..+.+|.+++..|++..|...+++.
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455567788999999999999998886 5677788899999999999998888763
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.57 E-value=0.0003 Score=46.72 Aligned_cols=89 Identities=8% Similarity=-0.017 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--------C-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-c--------
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT--------N-DPADVYMQAQALFLGRHYRRAFHLLNASK-I-------- 67 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--------~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l-------- 67 (95)
..-+..+..-+...++|+.|+-+.++++.+. + .....+.+|.+++..|++..|...+++.- +
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455667777888999999999999999883 1 24466778999999999999998886531 1
Q ss_pred cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 68 VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 68 ~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
........+..|.++...|++++|+..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~ 191 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETL 191 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 223456778889999999999999864
No 101
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00051 Score=49.83 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
+..+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Confidence 34455667778889999999999888886 6677788889999999999988877653 122345667788889999999
Q ss_pred cHHHHHhc
Q 040780 87 EWEQCLSM 94 (95)
Q Consensus 87 ~~~eal~~ 94 (95)
++++|+..
T Consensus 387 ~~~~A~~~ 394 (514)
T 2gw1_A 387 DFDKALKQ 394 (514)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99988764
No 102
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.55 E-value=0.00098 Score=44.79 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-------h------hHHHHHHHHhhCCCHHHHHHHHhcCc-c-----
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP-------A------DVYMQAQALFLGRHYRRAFHLLNASK-I----- 67 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-------~------~~~llA~~l~~~~~~~~A~~ll~~~~-l----- 67 (95)
+.+...-......+.|+.|+..-+|.+.++|+. . .-+-+|.|+...|+|..|+...++.- +
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455556678999999999999999999861 1 34556999999999999988776541 2
Q ss_pred --cccChhhH----HHHHHHHHHcccHHHHHhc
Q 040780 68 --VLRDLRFR----YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 68 --~~~~~~c~----yL~A~c~~~l~~~~eal~~ 94 (95)
.+...... |-.|.++..+|+++||+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~ 124 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence 34455566 7889999999999999864
No 103
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.54 E-value=0.00094 Score=41.68 Aligned_cols=80 Identities=16% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
..+-.-+...++|+.|+-+.++++.++| +++..+.+|.|++..|++..|...+++. .+.+.++....+..++...++.
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 3444556789999999999999999997 7788889999999999999999988764 1223455566666776666555
Q ss_pred HH
Q 040780 88 WE 89 (95)
Q Consensus 88 ~~ 89 (95)
.+
T Consensus 136 l~ 137 (142)
T 2xcb_A 136 VT 137 (142)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.54 E-value=0.00025 Score=47.13 Aligned_cols=89 Identities=12% Similarity=-0.056 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc-----C----CchhHHHHHHHHhhCCCHHHHHHHHhcCcc---------
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT-----N----DPADVYMQAQALFLGRHYRRAFHLLNASKI--------- 67 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-----~----~~~~~~llA~~l~~~~~~~~A~~ll~~~~l--------- 67 (95)
..-+..+-.-+...++|+.|+-+.++++.+. + .....+.+|.+++..|++..|...+++.--
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456667778889999999999999999884 2 234677889999999999999988875311
Q ss_pred cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 68 VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 68 ~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+......+..|.++..+|++++|+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~ 149 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYY 149 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 123456678889999999999999864
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.54 E-value=0.00017 Score=46.70 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc--------------------
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-------------------- 66 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-------------------- 66 (95)
.+-......+..++++.|+-..++++..+| +++..+.+|.++...|++..|...+++.-
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 345566778889999999999999999996 67788899999999999999988775431
Q ss_pred ---------------ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 67 ---------------IVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 67 ---------------l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+.++...+..|.++...|++++|+..
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0122455677788888888888888754
No 106
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.54 E-value=0.00027 Score=47.82 Aligned_cols=88 Identities=8% Similarity=0.050 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhc--------C-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-----------
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALT--------N-DPADVYMQAQALFLGRHYRRAFHLLNASK----------- 66 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--------~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~----------- 66 (95)
.-+..+..-+...++++.|+-+.++++.+. + .....+.+|.+++..|++..|...+++.-
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 335556667788999999999999999882 1 23456778999999999999988876531
Q ss_pred ---------------------------------------ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 67 ---------------------------------------IVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 67 ---------------------------------------l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.........+..|.++.+.|++++|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1123345677889999999999999864
No 107
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00076 Score=47.90 Aligned_cols=75 Identities=9% Similarity=-0.048 Sum_probs=30.1
Q ss_pred HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
..+.++.|+-..++.+.++| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++.+.|++++|+
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33444444444444444443 2233333444444444444444443321 111223333344444444444444443
No 108
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.52 E-value=0.00029 Score=52.99 Aligned_cols=82 Identities=17% Similarity=0.037 Sum_probs=46.2
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhC---------CCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLG---------RHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~---------~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
+-.-+...++|+.|+-+.++++.++|++...+.+|.++... |++..|...+++. .+.+.+....+..|.+
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444555666666666666666665555555566666666 6666666555442 1223445555566666
Q ss_pred HHHc--------ccHHHHHh
Q 040780 82 LEEL--------KEWEQCLS 93 (95)
Q Consensus 82 ~~~l--------~~~~eal~ 93 (95)
+..+ +++++|+.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHH
Confidence 6666 66666654
No 109
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.52 E-value=0.00016 Score=54.82 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH--HHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC--LEE 84 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c--~~~ 84 (95)
+..+-.-+..+++|+.|+-..++++.++| ++...+.+|.+++..|++.+|...+++. .+.+.+....+..+.+ +.+
T Consensus 43 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 122 (477)
T 1wao_1 43 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122 (477)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44555667889999999999999999997 6778889999999999999999988764 2234556677778888 888
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
.++|++|+..
T Consensus 123 ~g~~~~A~~~ 132 (477)
T 1wao_1 123 QKAFERAIAG 132 (477)
T ss_dssp HHHHCCC---
T ss_pred HHHHHHHhcc
Confidence 8999988764
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.51 E-value=0.00011 Score=47.11 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=53.1
Q ss_pred HHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 30 DKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 30 ekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++++.++| +++..+.+|.+++..|+|..|+..+++. .+.+.++...+..|.|+..+|+|++|+..
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55666665 6678888999999999999999988763 23356777888899999999999999864
No 111
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.51 E-value=0.0014 Score=38.13 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
+..+..-+...++++.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.++...+..+.+....
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 44566677889999999999999999986 6677788999999999999999988763 22345666677777766554
No 112
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.50 E-value=0.00047 Score=46.61 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--------C-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc--------
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--------N-DPADVYMQAQALFLGRHYRRAFHLLNASKI-------- 67 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--------~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-------- 67 (95)
..+-+..+...+...++|+.|+-+.++++.+. + .....+.+|.+++..|++..|...+++.--
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45667788888999999999999999999862 1 345677889999999999999988865310
Q ss_pred -cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 68 -VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 68 -~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
........+..|.++...|++++|+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 133 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPL 133 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 123456778889999999999999864
No 113
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.48 E-value=0.00068 Score=54.51 Aligned_cols=81 Identities=6% Similarity=-0.069 Sum_probs=59.5
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea 91 (95)
.-+..+++++.|+-.-++++.++| +++..+.+|.++...|++..|+..+++. .+...+....+-.|.++.++|+++||
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345667888888888888888886 5667777888888888888887777653 23345666777778888888888887
Q ss_pred Hhc
Q 040780 92 LSM 94 (95)
Q Consensus 92 l~~ 94 (95)
+..
T Consensus 131 i~~ 133 (723)
T 4gyw_A 131 IAS 133 (723)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.47 E-value=0.00081 Score=41.82 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
+..+-.-+...++|+.|+-..++++.++| +++..+.+|.+++..|+|..|...+++. .+.+.+...+.-.++|
T Consensus 50 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 50 YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 33445567789999999999999999997 6778889999999999999999988764 2344566655555554
No 115
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.47 E-value=0.00077 Score=47.92 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-c----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccCh
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-P----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDL 72 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~ 72 (95)
....+...-..+...++|+.|+-+.++++.+.++ + ...+.+|.+++..|++..|...+++. +-.....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455666777889999999999999999999864 3 35678899999999999999887653 1123445
Q ss_pred hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+.+..|.++...|++++|+..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~ 148 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAIC 148 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHH
Confidence 6788899999999999999864
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.45 E-value=0.00068 Score=50.51 Aligned_cols=87 Identities=16% Similarity=0.009 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhc------CC--chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALT------ND--PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLA 78 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~------~~--~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~ 78 (95)
-+..++.-+...++++.|+-+-+++.... |+ ....+.++.++...|++..|...+++. .+.+.++...+..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35567778889999999999999999883 22 345678899999999999999988763 2234577889999
Q ss_pred HHHHHHcccHHHHHhc
Q 040780 79 AKCLEELKEWEQCLSM 94 (95)
Q Consensus 79 A~c~~~l~~~~eal~~ 94 (95)
|.++.+.|++++|+..
T Consensus 557 ~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHH
Confidence 9999999999999864
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.41 E-value=0.00093 Score=44.46 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=46.4
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+-.-+...++|+.|+-+.++++.++| +++..+.+|.+++..|++..|...+++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55567789999999999999999997 677888899999999999999888775
No 118
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.41 E-value=0.00098 Score=40.23 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
..-+..+-.-+...++|+.|+-+.++++.++| +++..+.+|.|++..|++..|...+++.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666778899999999999999999997 6778889999999999999999988763
No 119
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00025 Score=41.49 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=46.6
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..+.+|.+++..|+|..|+...++. .+.+.++...+..|.|+..+|+|++|+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456778999999999999999988764 23356778889999999999999999864
No 120
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.37 E-value=0.00043 Score=52.06 Aligned_cols=83 Identities=8% Similarity=-0.039 Sum_probs=67.2
Q ss_pred HHHHHHHhCCh-hhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHc----
Q 040780 12 VVRDCVSKHLY-SSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEEL---- 85 (95)
Q Consensus 12 ~v~~~l~~~~y-~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l---- 85 (95)
+-.-+...++| +.|+-+.++++.++| +++..+.+|.+++..|++..|...+++.--........+..|.++..+
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCC
Confidence 33455677899 999999999999997 677888999999999999999998876421123357778889999999
Q ss_pred -----ccHHHHHhc
Q 040780 86 -----KEWEQCLSM 94 (95)
Q Consensus 86 -----~~~~eal~~ 94 (95)
+++++|+..
T Consensus 188 ~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 188 GDEHSRHVMDSVRQ 201 (474)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHH
Confidence 999999864
No 121
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.0018 Score=38.35 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++...+.+|.+++..|+|..|+..+++. .+.+..+...+..|.|+.++|++++|+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5667889999999999999999988764 23355677888999999999999999864
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0018 Score=39.04 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cc------ccChhhHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IV------LRDLRFRYLAAK 80 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~------~~~~~c~yL~A~ 80 (95)
+..+-.-+...++|+.|+-..++++.++| ++...+.+|.+++..|++..|...+++.- +. +.+.......++
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 34455567789999999999999999997 67788899999999999999999887631 22 334445555555
Q ss_pred HHH
Q 040780 81 CLE 83 (95)
Q Consensus 81 c~~ 83 (95)
|.-
T Consensus 121 ~~~ 123 (126)
T 3upv_A 121 ASQ 123 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.32 E-value=0.0014 Score=43.88 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhh------------------CCCHHHHHHHHhcCc-
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFL------------------GRHYRRAFHLLNASK- 66 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~------------------~~~~~~A~~ll~~~~- 66 (95)
-.+..-+...++|+.|+-..++++...|+.. ..|.+|.+++. .|++..|+..+++.-
T Consensus 45 ~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 45 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence 3345567789999999999999999997433 67899999986 679999988776521
Q ss_pred ccccChhhH-----------------HHHHHHHHHcccHHHHHhc
Q 040780 67 IVLRDLRFR-----------------YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 67 l~~~~~~c~-----------------yL~A~c~~~l~~~~eal~~ 94 (95)
..+.+.... +..|.++++.|+|++|+..
T Consensus 125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 169 (225)
T 2yhc_A 125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNR 169 (225)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 112222211 5668899999999999864
No 124
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.29 E-value=0.0013 Score=47.05 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCC-c------hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTND-P------ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRF 74 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~------~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c 74 (95)
+..+-.-+...++|+.|+-+.++.+.+.+. + ...+-+|.+++..|+|..|...+++. +..+..+.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 344456677889999999999999988742 1 26777899999999999998877653 111345677
Q ss_pred HHHHHHHHHHcccHHHHHhc
Q 040780 75 RYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..|.++.++|++++|+..
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~ 286 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEY 286 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 88899999999999999864
No 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.0041 Score=35.79 Aligned_cols=73 Identities=14% Similarity=-0.030 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC 81 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c 81 (95)
+..+..-+...++|+.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.++...+..+++
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 44555667889999999999999999997 6778889999999999999999988764 2233455555544443
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.28 E-value=0.0022 Score=44.55 Aligned_cols=84 Identities=18% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcCC-ch------hHHHHHHHHhhCCCHHHHHHHHhcC--------cccccChhhH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTND-PA------DVYMQAQALFLGRHYRRAFHLLNAS--------KIVLRDLRFR 75 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~------~~~llA~~l~~~~~~~~A~~ll~~~--------~l~~~~~~c~ 75 (95)
.+..-+...++|+.|+..-++++.+... ++ ....+|.+++..|+|..|....++. +.........
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 3445556677889999999998887632 22 3567788999999999888776653 1111223466
Q ss_pred HHHHHHHHHcccHHHHHhc
Q 040780 76 YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 76 yL~A~c~~~l~~~~eal~~ 94 (95)
+-.|.++.++|+|++|+..
T Consensus 200 ~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 7788899999999998753
No 127
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.0032 Score=44.02 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDP-----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFR 75 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~ 75 (95)
.+...-..+...++|+.|+-+.++++...|+. ...+.+|.+++..|+|..|...+++. +-......+.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34555667889999999999999999998643 35678899999999999999877642 1112335577
Q ss_pred HHHHHHHHHcccHHHHHhc
Q 040780 76 YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 76 yL~A~c~~~l~~~~eal~~ 94 (95)
+..|.++...|++++|+..
T Consensus 91 ~~la~~~~~~g~~~~A~~~ 109 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVC 109 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 8889999999999999864
No 128
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.0035 Score=42.47 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=43.1
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH---
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE--- 84 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~--- 84 (95)
+-..+...+.++.|+-+-++... .++++..+.+|.++.. .|++..|...+++.- ...++...+..|.++..
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhCCCC
Confidence 33444555566666666666555 2344555556666666 666666665555431 12244555555666665
Q ss_pred -cccHHHHHh
Q 040780 85 -LKEWEQCLS 93 (95)
Q Consensus 85 -l~~~~eal~ 93 (95)
.+++++|+.
T Consensus 90 ~~~~~~~A~~ 99 (273)
T 1ouv_A 90 VSQNTNKALQ 99 (273)
T ss_dssp SCCCHHHHHH
T ss_pred cccCHHHHHH
Confidence 556655554
No 129
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.22 E-value=0.0014 Score=48.70 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=52.1
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCC-HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRH-YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~-~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
....+.++.|+-..++++.++| +....+.+|.++...|+ +..|+..+++. .+.+++....+-.|.++..+|++++|+
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 3456777777777777777776 44455566777777776 77777766653 233456666666777777777776665
Q ss_pred h
Q 040780 93 S 93 (95)
Q Consensus 93 ~ 93 (95)
.
T Consensus 187 ~ 187 (382)
T 2h6f_A 187 E 187 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.20 E-value=0.0006 Score=39.26 Aligned_cols=57 Identities=14% Similarity=0.421 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+++..+.+|.+++..|++.+|...+++. .+.+.+....+..|.++..+|+|++|+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 62 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 5667788999999999999999988764 22345677788899999999999999864
No 131
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.19 E-value=0.0022 Score=44.88 Aligned_cols=86 Identities=7% Similarity=0.075 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch------hHHHHHHHHhhCCCHHHHHHHHhcCc-cccc------Chhh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA------DVYMQAQALFLGRHYRRAFHLLNASK-IVLR------DLRF 74 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~------~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~------~~~c 74 (95)
+..+..-+...++|+.|+-+.++.+.+.+ .++ ..+.+|.+++..|++..|...+++.- +... ....
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 44555666778888888888888887763 222 56677888888888888877776431 1011 1445
Q ss_pred HHHHHHHHHHcccHHHHHhc
Q 040780 75 RYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..|.++...|++++|+..
T Consensus 270 ~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHH
Confidence 66678888888888887653
No 132
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.00054 Score=53.95 Aligned_cols=80 Identities=18% Similarity=0.039 Sum_probs=51.5
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
.+..-++..++|+.|+-..++++.++| +++..+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.++.++|+|
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence 344556778888888888888888886 5666777788888888888887766542 12223344444444444444444
Q ss_pred HH
Q 040780 89 EQ 90 (95)
Q Consensus 89 ~e 90 (95)
++
T Consensus 518 ~~ 519 (681)
T 2pzi_A 518 DE 519 (681)
T ss_dssp CT
T ss_pred HH
Confidence 33
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.00079 Score=53.01 Aligned_cols=79 Identities=10% Similarity=-0.060 Sum_probs=67.0
Q ss_pred HHHhCChhhHHHHHHHHh--------hhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780 16 CVSKHLYSSAIFFADKVA--------ALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL 85 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~--------a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l 85 (95)
.+..++++.|+-..+++. ..+| +.+..+.+|.+++..|+|..|...+++. .+...+....+..|.++..+
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 377899999999999998 7765 6778888999999999999999988764 23456788899999999999
Q ss_pred ccHHHHHhc
Q 040780 86 KEWEQCLSM 94 (95)
Q Consensus 86 ~~~~eal~~ 94 (95)
|+|++|+..
T Consensus 481 g~~~~A~~~ 489 (681)
T 2pzi_A 481 GDYDSATKH 489 (681)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999864
No 134
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.16 E-value=0.0016 Score=37.67 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-Cch-hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPA-DVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~-~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
....++..++|+.|+-..++++..+| ++. ..+.+|.+++..|++..|...+++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567789999999999999999997 566 7888999999999999999988763
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.16 E-value=0.0016 Score=38.29 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-C-------chhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-D-------PADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAK 80 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~ 80 (95)
+..+..-+...++|+.|+-+.++++...+ + +...+.+|.+++..|++..|...+++.--...++......++
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 120 (131)
T 1elr_A 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44556667889999999999999999985 3 567788999999999999999988764222235666666677
Q ss_pred HHHHccc
Q 040780 81 CLEELKE 87 (95)
Q Consensus 81 c~~~l~~ 87 (95)
+...+++
T Consensus 121 ~~~~~~~ 127 (131)
T 1elr_A 121 AEKILKE 127 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 136
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.13 E-value=0.0021 Score=43.31 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccChh
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRDLR 73 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~~~ 73 (95)
-+..+..-+...++++.|+-+.++.+.+.+. ....+.+|.+++..|++..|...+++.- -......
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3445556677788889998888888877631 3456678889999999998888776531 0111234
Q ss_pred hHHHHHHHHHHcccHHHHHhc
Q 040780 74 FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.+..|.++.+.|++++|+..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHH
Confidence 667788888899999888764
No 137
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.08 E-value=0.0035 Score=37.44 Aligned_cols=57 Identities=7% Similarity=-0.063 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-C---chhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-D---PADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~---~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+..+..-+...++|+.|+-+.++++...| + ++..+.+|.+++..|++..|...+++.
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455567889999999999999999987 4 567899999999999999999988763
No 138
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.03 E-value=0.0024 Score=45.28 Aligned_cols=87 Identities=7% Similarity=0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch------hHHHHHHHHhhCCCHHHHHHHHhcCc-ccc------cChh
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA------DVYMQAQALFLGRHYRRAFHLLNASK-IVL------RDLR 73 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~------~~~llA~~l~~~~~~~~A~~ll~~~~-l~~------~~~~ 73 (95)
-+..+..-+...++|+.|+-+.++.+.+.+ ..+ ..+.+|.+++..|++..|...+++.- +.. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455667788889999999888888774 222 56778889999999888888776531 001 1245
Q ss_pred hHHHHHHHHHHcccHHHHHhc
Q 040780 74 FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+..|.++...|++++|+..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 667778888888888888753
No 139
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.02 E-value=0.00075 Score=47.67 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
-.+|+.+...|++..|+..+++ .+..+.++...++.|..+...|++++|+..
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3334444444444444444432 111244566777888888888888888764
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.00 E-value=0.0043 Score=39.22 Aligned_cols=57 Identities=12% Similarity=-0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+..+-.-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++.
T Consensus 48 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44556667889999999999999999997 6778899999999999999999988753
No 141
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.00 E-value=0.0013 Score=48.75 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=62.7
Q ss_pred HHHhCC-hhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780 16 CVSKHL-YSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL 92 (95)
Q Consensus 16 ~l~~~~-y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal 92 (95)
....+. |+.|+-+.++++.++| ++...+.+|.++...|++..|+..+++. .+..++..+.+-.|.++..+|+|++|+
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 445676 9999999999999986 6667777899999999999998887764 234567778888888888889888887
Q ss_pred hc
Q 040780 93 SM 94 (95)
Q Consensus 93 ~~ 94 (95)
..
T Consensus 221 ~~ 222 (382)
T 2h6f_A 221 QY 222 (382)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 142
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.00 E-value=0.0075 Score=40.79 Aligned_cols=73 Identities=8% Similarity=0.093 Sum_probs=43.6
Q ss_pred hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHH
Q 040780 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQ 90 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~e 90 (95)
.++++.|+-|-++..... +++..+.+|.++.. .|++..|+..+++.- ...++...+..|.++.. .+++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCccHHHHHHHHHHcCCCcccCHHH
Confidence 566666666666665553 55666666666666 666666666665431 12345555566666666 666666
Q ss_pred HHh
Q 040780 91 CLS 93 (95)
Q Consensus 91 al~ 93 (95)
|+.
T Consensus 133 A~~ 135 (273)
T 1ouv_A 133 AVE 135 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.95 E-value=0.0069 Score=41.95 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhc---CCc-----hhHHHHHHHHhhCCCHHHHHHHHhcCccc-------ccCh
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALT---NDP-----ADVYMQAQALFLGRHYRRAFHLLNASKIV-------LRDL 72 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~~l~-------~~~~ 72 (95)
-+..+-.-+...++|+.|+-+-++++.+. ++. ...+-+|.+++..|+|..|...+++.--. ..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44555667788999999999999988553 321 35677899999999999998887653100 1114
Q ss_pred hhHHHHHHHHHHcccHHHH
Q 040780 73 RFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~ea 91 (95)
.+.+..|.++.++|++++|
T Consensus 237 ~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCcHHH
Confidence 5667889999999999988
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0059 Score=36.87 Aligned_cols=74 Identities=18% Similarity=0.048 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK 80 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~ 80 (95)
.-+..+..-+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.+.......++
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3455566678899999999999999999986 6677889999999999999999988764 122334444444333
No 145
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.93 E-value=0.0037 Score=44.59 Aligned_cols=84 Identities=10% Similarity=0.051 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc-------hhHHHHHHHHhhCCCHHHHHHHHhcCc-c------cccChhh
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DP-------ADVYMQAQALFLGRHYRRAFHLLNASK-I------VLRDLRF 74 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~-------~~~~llA~~l~~~~~~~~A~~ll~~~~-l------~~~~~~c 74 (95)
..+-.-+...++|+.|+-+.++.+.+.+ .+ .....+|.++...|+|..|...+++.- + .......
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3334444455566666666666555542 11 134445556666666666555444320 0 0011124
Q ss_pred HHHHHHHHHHcccHHHHHh
Q 040780 75 RYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~ 93 (95)
.+-.|.++..+|++++|+.
T Consensus 227 ~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 4445666666666666554
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.91 E-value=0.0066 Score=36.53 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..+-.-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44455667789999999999999999997 677889999999999999999988865
No 147
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.88 E-value=0.0055 Score=36.43 Aligned_cols=57 Identities=5% Similarity=-0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+..+-.-+...++|+.|+-+.++++.++| +++..+.+|.++...|++..|...+++.
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455667889999999999999999997 6778889999999999999999988763
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.88 E-value=0.0016 Score=40.03 Aligned_cols=56 Identities=5% Similarity=-0.144 Sum_probs=47.8
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..+.+|..++..|++..|+..+++. ...+.+....+..|.++...|++++|+..
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 73 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 357889999999999999999988764 23456888899999999999999999865
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.86 E-value=0.0021 Score=39.80 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 43 YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.-+|.++|..|+|..|+...++. .+.+.++...+-.|.|+.++|+|++|+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence 35799999999999999988764 24456777888889999999999999863
No 150
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.86 E-value=0.0022 Score=36.00 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=45.6
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
+...+.+|.+++..|++..|...+++. ...+.++...+..|.++.+.+++++|+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456778899999999999999888753 22345677788999999999999999864
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.85 E-value=0.023 Score=39.24 Aligned_cols=90 Identities=11% Similarity=-0.005 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch-------hHHHHHHHHhhCCCHHHHHHHHhcCc-cccc------
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA-------DVYMQAQALFLGRHYRRAFHLLNASK-IVLR------ 70 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~-------~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~------ 70 (95)
.++.+...+..++.+++|+.|+-+.++.....+... ..+.+|.++...|+|..|+..+++.- +..+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345667778889999999999999999888775322 24567888899999999999876431 1011
Q ss_pred ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 71 DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
...+.+-.|.++...|+|++|+..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~ 177 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDL 177 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 134667789999999999999864
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.83 E-value=0.0065 Score=38.72 Aligned_cols=86 Identities=14% Similarity=-0.105 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc---C-Cc----hhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccChh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT---N-DP----ADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRDLR 73 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~-~~----~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~~~ 73 (95)
+..+-.-+...++|+.|+-+.++.+.+. + ++ ...+.+|.+++..|++..|...+++.- -......
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4455566778899999999999988884 3 22 246677999999999999988776531 0011123
Q ss_pred hHHHHHHHHHHcccHHHHHhc
Q 040780 74 FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~~ 94 (95)
+....|.++...|++++|+..
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~ 169 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQH 169 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHH
Confidence 456778999999999998764
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.79 E-value=0.0047 Score=39.42 Aligned_cols=89 Identities=4% Similarity=-0.155 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-------CchhHHHHHHHHhhCCCHHHHHHHHhcC-------cccc-c
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-------DPADVYMQAQALFLGRHYRRAFHLLNAS-------KIVL-R 70 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-------~~~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~-~ 70 (95)
..-+..+-.-+...++|+.|+-+.++.+.+.. .....+.+|.++...|++..|...+++. +-.. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34455666778889999999999999988652 2335677899999999999998877653 1011 2
Q ss_pred ChhhHHHHHHHHHHcccHHHHHhc
Q 040780 71 DLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
...+.+..|.++...|++++|+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~ 129 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQE 129 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 245677789999999999999764
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0018 Score=37.49 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=43.8
Q ss_pred HHHHHHHHhhCCCHHHHHHHHhcC-cccccChh-hHHHHHHHHHHcccHHHHHhc
Q 040780 42 VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR-FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 42 ~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~-c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+-.|.+++..|+|..|+..+++. ...+.++. ..+..|.|+..+|++++|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~ 57 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467899999999999999988763 22345677 888999999999999999864
No 155
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.78 E-value=0.0023 Score=38.74 Aligned_cols=55 Identities=5% Similarity=0.101 Sum_probs=26.9
Q ss_pred chhHHHHHHHHhhCCCHHHHHHHHhcCc--------ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 39 PADVYMQAQALFLGRHYRRAFHLLNASK--------IVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 39 ~~~~~llA~~l~~~~~~~~A~~ll~~~~--------l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+++-|-+|..+|..|+|.+|+.+++..- .......+.+..|.|++++|++++|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 3455555555555555555555554310 001233444555556666665555543
No 156
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.76 E-value=0.0027 Score=38.32 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 22 YSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 22 y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+.|.-+-++.+.++| ++...+++|..+|..|+|..|+...++
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677777777777775 666777777777777777777776554
No 157
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.69 E-value=0.0055 Score=39.32 Aligned_cols=74 Identities=15% Similarity=-0.058 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc--ChhhHHHHHHHHHHcccHHHHHh
Q 040780 20 HLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR--DLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~--~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.....|+-..++++..+| +++..+.+|.++...|++..|...+++.- ..+. .....+..+.++..+|++++|+.
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 344457888899999987 67888999999999999999999887531 1122 24577888999999999998875
No 158
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.69 E-value=0.0083 Score=41.74 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=61.9
Q ss_pred HHHHHHHHHHh-CChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccCh-------
Q 040780 9 LRGVVRDCVSK-HLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDL------- 72 (95)
Q Consensus 9 Lr~~v~~~l~~-~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~------- 72 (95)
+..+-.-+... ++|+.|+-+-++.+.+.++ ......+|.++...|+|..|+..+++.. +.+.+.
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 34444455565 9999999999999998752 1235567999999999999999887631 111111
Q ss_pred hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~ 94 (95)
...+-.|.|+..+|++++|+..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 1334568999999999999864
No 159
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.69 E-value=0.013 Score=41.86 Aligned_cols=87 Identities=8% Similarity=-0.011 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhCCCHHHHHHHHhcCc------ccccChhh
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLGRHYRRAFHLLNASK------IVLRDLRF 74 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~~~~~~A~~ll~~~~------l~~~~~~c 74 (95)
-+..+-.-+...++|+.|+-+.++.+.+.+ + ....+-+|.+++..|++..|...+++.- ..+..+.+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 344555667889999999999999998863 2 2245668999999999999988876531 12334678
Q ss_pred HHHHHHHHHHcccHHHHHhc
Q 040780 75 RYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..|.++.++|++++|+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~ 283 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQF 283 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 88999999999999999864
No 160
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.66 E-value=0.036 Score=38.26 Aligned_cols=91 Identities=12% Similarity=0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchh------H-HHHHHHHhhCCCHHHHHHHHhcCc-c--cccC--
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPAD------V-YMQAQALFLGRHYRRAFHLLNASK-I--VLRD-- 71 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~------~-~llA~~l~~~~~~~~A~~ll~~~~-l--~~~~-- 71 (95)
+....+...+...+.+++|+.|+-..+++....+...+ . +.++.+++..|+|..|+..+++.- + ....
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 34566777789999999999999999999887753222 1 237888888999999998776531 0 0111
Q ss_pred --hhhHHHHHHHHHHcccHHHHHhc
Q 040780 72 --LRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 72 --~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..+..-.|.++..+|+|++|+..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~ 177 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDL 177 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33567789999999999999863
No 161
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.58 E-value=0.012 Score=39.22 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCC----CHHHHHHHHhcCcccccChhhHHHHHHHHHH----c
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGR----HYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----L 85 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~----~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l 85 (95)
.-+...++++.|+-|-+|.... ++++..+.+|.+|.. | ++.+|+.++++. ....++...+-.|.++.. .
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g~~~a~~~Lg~~y~~g~g~~ 102 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKA-VEAGSKSGEIVLARVLVNRQAGA 102 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTCGGGSS
T ss_pred HHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCCCc
Confidence 3444567778888888877554 567777777777776 5 777777777654 234566666777777766 6
Q ss_pred ccHHHHHh
Q 040780 86 KEWEQCLS 93 (95)
Q Consensus 86 ~~~~eal~ 93 (95)
+++++|+.
T Consensus 103 ~d~~~A~~ 110 (212)
T 3rjv_A 103 TDVAHAIT 110 (212)
T ss_dssp CCHHHHHH
T ss_pred cCHHHHHH
Confidence 66776664
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0085 Score=43.08 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
..+-.-++..++|+.|+-..++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......+++...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3445566788999999999999999997 6788899999999999999999999875 2334555566666666444
No 163
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.0078 Score=36.27 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=44.6
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC--------CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN--------DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~--------~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
.+=..+.+++.|+.|++|-++++...+ .++-...||.|++..|++..|+...++.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 455678899999999999999887641 2334568899999999999999988764
No 164
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.44 E-value=0.018 Score=44.34 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc----C--Cch---hHHHHHHHHhhCCCHHHHHHHHhcCc------ccc
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT----N--DPA---DVYMQAQALFLGRHYRRAFHLLNASK------IVL 69 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~----~--~~~---~~~llA~~l~~~~~~~~A~~ll~~~~------l~~ 69 (95)
+..-+..+..-+.+++.|+.|+-+.+|.+++. | +|+ ++.-+|..|...|+|..|..++++.- +-.
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34556677778889999999999999999886 2 333 66778999999999999998887531 112
Q ss_pred cChh---hHHHHHHHHHHcccHHHHHhc
Q 040780 70 RDLR---FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 70 ~~~~---c~yL~A~c~~~l~~~~eal~~ 94 (95)
.|+. ..-+.++|..++++|++|+..
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 345678888999999998753
No 165
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.44 E-value=0.013 Score=40.70 Aligned_cols=87 Identities=7% Similarity=-0.054 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhC-CCHHHHHHHHhcCc-cccc------Ch
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLG-RHYRRAFHLLNASK-IVLR------DL 72 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~-~~~~~A~~ll~~~~-l~~~------~~ 72 (95)
-+..+-.-+...++|+.|+-.-++.+.+.+ + .....-+|.++... |+|..|+...++.- +.+. ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344455556677888888888888888773 2 22455678888885 89888887776531 1111 13
Q ss_pred hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..-.|.++.++|+|++|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHH
Confidence 4556678888899999988764
No 166
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.24 E-value=0.0048 Score=41.38 Aligned_cols=76 Identities=8% Similarity=0.058 Sum_probs=60.8
Q ss_pred hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHH----------HHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780 19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYR----------RAFHLLNAS-KIVLRDLRFRYLAAKCLEELK 86 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~----------~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~ 86 (95)
..+|+.|+=.+++.+.++| +++..+.++.++...|++. .|+..+++. .+.+......|-.|.++..++
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 4568899999999999998 5566666999999998864 888887764 345667788888999999875
Q ss_pred -----------cHHHHHhc
Q 040780 87 -----------EWEQCLSM 94 (95)
Q Consensus 87 -----------~~~eal~~ 94 (95)
+|++|+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQF 113 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHH
Confidence 78888763
No 167
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.18 E-value=0.023 Score=37.86 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHhhCC---CHHHHHHHHhcCc-cc-c-cChhhHHHHHHHHHHcccHHHHHh
Q 040780 37 NDPADVYMQAQALFLGR---HYRRAFHLLNASK-IV-L-RDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~---~~~~A~~ll~~~~-l~-~-~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
++++..|-||.||.+++ +..+++.+++.-- .. + .+..|.|..|-.++++++|++|..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 47889999999999999 5569988876421 11 1 356899999999999999999875
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.13 E-value=0.071 Score=37.92 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc-----C-CchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT-----N-DPADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-----~-~~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
+..+-.-+...++|+.|+-+.++.+.+. + .+...+.+|.+++..|++..|...++
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555566666666666655522 1 23345555666666666665555544
No 169
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.01 E-value=0.036 Score=38.75 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC---Cc----hhHHHHHHHHhhCCCHHHHHHHHhcCc-cc------ccChhh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN---DP----ADVYMQAQALFLGRHYRRAFHLLNASK-IV------LRDLRF 74 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~~----~~~~llA~~l~~~~~~~~A~~ll~~~~-l~------~~~~~c 74 (95)
+..+-.-+...++|+.|+-+-++.+.+.+ ++ ....-+|.++.. |+|..|+...++.- +. .....+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 34444455566777777777777766642 22 234456777766 77777766665421 00 011345
Q ss_pred HHHHHHHHHHcccHHHHHh
Q 040780 75 RYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~ 93 (95)
..-.|.++.++|+|++|+.
T Consensus 158 ~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 5556777777777777765
No 170
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.99 E-value=0.0098 Score=43.70 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhcC-ccc--ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 25 AIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNAS-KIV--LRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 25 AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~--~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
|+=.-+++++.. +++..++.+|+.+...|++..|..++.+. +.. ..++.+..+.+++++++|+.++|.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 444556666554 45667899999999999999999999875 222 26889999999999999999999865
No 171
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.80 E-value=0.031 Score=41.01 Aligned_cols=88 Identities=11% Similarity=-0.016 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-----CchhHHHHHHH--HhhCC--CHHHHHHHHhcCcccccChh--
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-----DPADVYMQAQA--LFLGR--HYRRAFHLLNASKIVLRDLR-- 73 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~~~~~llA~~--l~~~~--~~~~A~~ll~~~~l~~~~~~-- 73 (95)
.++-..-.|+-++..++.+.|.=..+++...++ +..-+..++.. .+..| ++..|+.+++.- ..+.+.
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El--~~~~p~~~ 212 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL--SQTFPTWK 212 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH--HTTSCSHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH--HHhCCCcc
Confidence 445556677778888888888888888777766 23445566555 55555 888888877762 223322
Q ss_pred -hHHHHHHHHHHcccHHHHHhcC
Q 040780 74 -FRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 74 -c~yL~A~c~~~l~~~~eal~~L 95 (95)
-..|.+ |...+|+|+||...|
T Consensus 213 ~~~lLln-~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 213 TQLGLLN-LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH-HHHHHTCHHHHHHHH
T ss_pred cHHHHHH-HHHHcCCHHHHHHHH
Confidence 334555 888999999988753
No 172
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.75 E-value=0.07 Score=40.19 Aligned_cols=87 Identities=5% Similarity=-0.088 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---Cc------hhHHHHHHHHhhCCCHHHHHHHHhcCc------ccccCh
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---DP------ADVYMQAQALFLGRHYRRAFHLLNASK------IVLRDL 72 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~~------~~~~llA~~l~~~~~~~~A~~ll~~~~------l~~~~~ 72 (95)
.+-..+...-.++.|+.|+-..+++++... .+ .+..-+|.+|...|+|.+|..+.++.- +-..||
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 344456667789999999999999998762 22 256677999999999999988876520 112333
Q ss_pred ---hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 ---RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ---~c~yL~A~c~~~l~~~~eal~~ 94 (95)
...+=.|..+..+|+|+||+..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~ 393 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKN 393 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455678888999999999864
No 173
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.74 E-value=0.056 Score=33.84 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=57.8
Q ss_pred CChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHHH
Q 040780 20 HLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQC 91 (95)
Q Consensus 20 ~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~ea 91 (95)
..++.|+.|-+|.... ++++..+.+|.+|+. .+++.+|+.++++.- ...++...+-.|.++.. .+++++|
T Consensus 39 ~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 116 (138)
T 1klx_A 39 INKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLILGYKQYAGKGVVKNEKQA 116 (138)
T ss_dssp SCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 3455688888888765 788899999999998 899999999888752 23577778888998888 7888888
Q ss_pred Hhc
Q 040780 92 LSM 94 (95)
Q Consensus 92 l~~ 94 (95)
+..
T Consensus 117 ~~~ 119 (138)
T 1klx_A 117 VKT 119 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 174
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.71 E-value=0.04 Score=38.72 Aligned_cols=81 Identities=9% Similarity=-0.049 Sum_probs=60.4
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCCch------hHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhHHHHHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTNDPA------DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFRYLAAK 80 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~------~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~yL~A~ 80 (95)
.-.+..+.++.|+-+.++.+...+..+ ....+|.+++..|++.+|...+++. +.......+....|.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345678999999999999988875332 3567799999999999998887653 111111234566788
Q ss_pred HHHHcccHHHHHhc
Q 040780 81 CLEELKEWEQCLSM 94 (95)
Q Consensus 81 c~~~l~~~~eal~~ 94 (95)
++...|++++|+..
T Consensus 102 ~~~~~G~~~~A~~~ 115 (373)
T 1hz4_A 102 ILFAQGFLQTAWET 115 (373)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
Confidence 99999999999764
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.64 E-value=0.089 Score=40.46 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=60.7
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcC------Cc---hhHHHHHHHHhhCCCHHHHHHHHhcC------cccccCh---hhH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTN------DP---ADVYMQAQALFLGRHYRRAFHLLNAS------KIVLRDL---RFR 75 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~------~~---~~~~llA~~l~~~~~~~~A~~ll~~~------~l~~~~~---~c~ 75 (95)
.....++.|+.|+=+.++.+++.. +| .+..-+|.+|...|+|.+|..+.++. -+-..|+ ...
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345679999999999999998862 22 26677899999999999998877652 0112343 345
Q ss_pred HHHHHHHHHcccHHHHHhc
Q 040780 76 YLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 76 yL~A~c~~~l~~~~eal~~ 94 (95)
.=.|..+..+|+|+||+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~ 415 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGM 415 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH
Confidence 5678888999999999864
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.61 E-value=0.056 Score=37.52 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+..+-.-+...++|+.|+-..++++.++| ++...+.+|.+++..|++..|...+++
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445567789999999999999999996 677889999999999999999988765
No 177
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.60 E-value=0.03 Score=33.56 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=49.0
Q ss_pred CCchhHHHHHHHHhhCCC---HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 37 NDPADVYMQAQALFLGRH---YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~---~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++++..+.+|++++..++ ...|..++++. .+++.++...++.|...++.|+|++|+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~ 65 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT 65 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 378888999999987766 68888888764 35678899999999999999999999874
No 178
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.54 E-value=0.11 Score=39.34 Aligned_cols=77 Identities=6% Similarity=-0.041 Sum_probs=57.1
Q ss_pred HhCChhhHHHHHHHHhhhcC------Cc---hhHHHHHHHHhhCCCHHHHHHHHhcCc------ccccChh---hHHHHH
Q 040780 18 SKHLYSSAIFFADKVAALTN------DP---ADVYMQAQALFLGRHYRRAFHLLNASK------IVLRDLR---FRYLAA 79 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~------~~---~~~~llA~~l~~~~~~~~A~~ll~~~~------l~~~~~~---c~yL~A 79 (95)
..+.|+.|+=+.+|.+++.. +| .+..-+|.+|...|+|.+|..+.++.- +-..|+. ...=.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45679999999999998762 22 255678999999999999988887530 1123433 445568
Q ss_pred HHHHHcccHHHHHhc
Q 040780 80 KCLEELKEWEQCLSM 94 (95)
Q Consensus 80 ~c~~~l~~~~eal~~ 94 (95)
..+..+|+|+||+..
T Consensus 390 ~~~~~qg~~~eA~~~ 404 (433)
T 3qww_A 390 RLYMGLENKAAGEKA 404 (433)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhccCHHHHHHH
Confidence 888999999999864
No 179
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.52 E-value=0.12 Score=38.16 Aligned_cols=74 Identities=8% Similarity=0.006 Sum_probs=53.2
Q ss_pred hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHH
Q 040780 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQ 90 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~e 90 (95)
...++.|+-|-++.... ++++..+.+|..++. .+++.+|..++++.- ...++...+..|.++.. .+++++
T Consensus 56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 57788888888887655 667788888888887 788888887776641 23466667777777777 667777
Q ss_pred HHhc
Q 040780 91 CLSM 94 (95)
Q Consensus 91 al~~ 94 (95)
|+..
T Consensus 134 A~~~ 137 (490)
T 2xm6_A 134 SVKW 137 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 180
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.50 E-value=0.14 Score=33.14 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCchhHHHHHHHHhhCCCHHH---HHHHHhcCc-cc--ccChhhHHHHHHHHHHcccHHHHHh
Q 040780 37 NDPADVYMQAQALFLGRHYRR---AFHLLNASK-IV--LRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~~~~---A~~ll~~~~-l~--~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+++++.|-||-||.++++... .+.++..-- -. ...-.|.|..|-.++++|+|++|..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 588999999999999998877 787776521 00 1344799999999999999999975
No 181
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.49 E-value=0.038 Score=38.44 Aligned_cols=78 Identities=18% Similarity=0.015 Sum_probs=58.4
Q ss_pred HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC--hhhHHHHHHHHHHcccHHHH
Q 040780 16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD--LRFRYLAAKCLEELKEWEQC 91 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~--~~c~yL~A~c~~~l~~~~ea 91 (95)
....+..+.|+=.-++++..+| +++..+.+|.++...|++..|...+.+.- ..+.+ ...+...+.++..+|+.++|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 3345556666666677788886 67888999999999999999998887531 11233 56678889999999998887
Q ss_pred Hh
Q 040780 92 LS 93 (95)
Q Consensus 92 l~ 93 (95)
+.
T Consensus 275 ~~ 276 (287)
T 3qou_A 275 AS 276 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 182
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.44 E-value=0.035 Score=38.76 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=56.5
Q ss_pred HHHHHhCChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccc----cC--hhhHHHHH
Q 040780 14 RDCVSKHLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNASK-IVL----RD--LRFRYLAA 79 (95)
Q Consensus 14 ~~~l~~~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~----~~--~~c~yL~A 79 (95)
.-+.. ++|+.|+-+-++.+.+.+. .....-+|.++...|+|..|+..+++.- +.. .. ....+-.+
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 33444 8999999999999988742 2355667999999999999998887531 000 11 12344456
Q ss_pred HHHHHcccHHHHHhc
Q 040780 80 KCLEELKEWEQCLSM 94 (95)
Q Consensus 80 ~c~~~l~~~~eal~~ 94 (95)
.|++.+|++++|+..
T Consensus 203 ~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 203 LVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHH
Confidence 778888999999864
No 183
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.40 E-value=0.1 Score=36.62 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhhhcC---C---ch---hHHHHHHHHhhCCCHHHHHHHHhcCc-----c-cccChhh
Q 040780 10 RGVVRDCVSKHLYSSAIFFADKVAALTN---D---PA---DVYMQAQALFLGRHYRRAFHLLNASK-----I-VLRDLRF 74 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~---~---~~---~~~llA~~l~~~~~~~~A~~ll~~~~-----l-~~~~~~c 74 (95)
..+-.-+...++|+.|+-+.++.+.+.+ + +. ....+|.+++..|++.+|...+++.- . ......+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3445567789999999999999988762 2 22 33458999999999999998886531 0 0113356
Q ss_pred HHHHHHHHHHcccHHHHHhc
Q 040780 75 RYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 75 ~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..|++....|++++|+..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~ 196 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQ 196 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 67789999999999999764
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.23 E-value=0.045 Score=39.61 Aligned_cols=51 Identities=8% Similarity=-0.091 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCHHHHHHHHhcCccccc----ChhhHHHHHHHHHHcccHHHHHh
Q 040780 43 YMQAQALFLGRHYRRAFHLLNASKIVLR----DLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 43 ~llA~~l~~~~~~~~A~~ll~~~~l~~~----~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+.+|.++-..|++..|...+++...-.. .+...|-.|.|+.++|+.+||..
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555555555544443210000 12234444555555555555543
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.03 E-value=0.092 Score=34.77 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=36.6
Q ss_pred hCChhhHHHHHHHHhhhcCC---chhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780 19 KHLYSSAIFFADKVAALTND---PADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~---~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~ 84 (95)
..+++.|+-|-++.....++ ++..+.+|.+|.. .+++..|..++++.--...++...+-.|.++..
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 34566666666666555443 5666666666666 556666666665531112344455555665554
No 186
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.65 E-value=0.058 Score=39.02 Aligned_cols=82 Identities=6% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccC---hhhHHHHHHHHHHcccHH
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRD---LRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~---~~c~yL~A~c~~~l~~~~ 89 (95)
..-.++.++|+.|.=.-+.+....|+....|.+|..++..|+|..|...+++..-.... ....|..|.++..+|+++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHH
Confidence 44567789999998888777766653227889999999999999999999865321111 236788899999999999
Q ss_pred HHHhc
Q 040780 90 QCLSM 94 (95)
Q Consensus 90 eal~~ 94 (95)
||+..
T Consensus 189 eAl~~ 193 (282)
T 4f3v_A 189 EAERR 193 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 187
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.54 E-value=0.17 Score=35.08 Aligned_cols=72 Identities=11% Similarity=-0.014 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhh-hcCCc-hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh-hHHHHHHHHHHcccHHHHHhc
Q 040780 23 SSAIFFADKVAA-LTNDP-ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR-FRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 23 ~~AiF~Aekl~a-~~~~~-~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~-c~yL~A~c~~~l~~~~eal~~ 94 (95)
+.|+-.-+|.+. +.|+. .--..+|..+...|++.+|..+.++. .+.+.++. ...-+|..+.+.|++++|+.+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 778888888777 56533 33445677777788888887776653 11223333 445567777777777777653
No 188
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.37 E-value=0.21 Score=35.89 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780 24 SAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLN 63 (95)
Q Consensus 24 ~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~ 63 (95)
.|+..-+++..++| .+...+.+|.++...|+|..|....+
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 33333344433332 23334444555555555555554444
No 189
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=94.32 E-value=0.16 Score=39.20 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
...+-..+-+.++|+.|.-+=++. ++-..+|.|+++.|+|..|+...++.+ ++..---...+|.+.|+|
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA~----~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp ------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHcC----CchhHHHHHHHHHHcCcH
Confidence 344455667778888888777755 567788999999999999988887753 222111223444555555
Q ss_pred HHHH
Q 040780 89 EQCL 92 (95)
Q Consensus 89 ~eal 92 (95)
++|.
T Consensus 194 ~lA~ 197 (449)
T 1b89_A 194 RLAQ 197 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 190
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.18 E-value=0.1 Score=34.54 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=44.5
Q ss_pred cCCchhHHHHHHHHhhCCCHH---HHHHHHhcCc--ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 36 TNDPADVYMQAQALFLGRHYR---RAFHLLNASK--IVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 36 ~~~~~~~~llA~~l~~~~~~~---~A~~ll~~~~--l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
.+++++.|-+|-||.++.+.. +.+.+++.-- -....-.|.|..|-.++++|+|++|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 98 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 368899999999999999876 5666665410 001344799999999999999999875
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.06 E-value=0.49 Score=34.83 Aligned_cols=42 Identities=12% Similarity=-0.083 Sum_probs=18.0
Q ss_pred ChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHh
Q 040780 21 LYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLN 63 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~ 63 (95)
.++.|+-|-++.... ++++..+.+|.++.. .+++..|..+++
T Consensus 166 d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 344444444444332 334444444444444 444444444443
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.79 E-value=0.12 Score=34.35 Aligned_cols=49 Identities=20% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHHhCChhhHHHHHHHHhhh-------cCC-chhH----HHHHHHHhhCCCHHHHHHHHhc
Q 040780 16 CVSKHLYSSAIFFADKVAAL-------TND-PADV----YMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~-------~~~-~~~~----~llA~~l~~~~~~~~A~~ll~~ 64 (95)
....++|+.|+-.+||.+.+ +|+ .... |-.|.++...|+|..|+.-.++
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 45579999999999999999 874 4445 7899999999999999988875
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.41 E-value=0.32 Score=36.52 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc----C--Cch---hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT----N--DPA---DVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~----~--~~~---~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
+..-+..+..-+..++.|+.|+-+.+|++.+. | +|+ .++-+|..|...|+|.+|..++++.
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556677778889999999999999999886 2 333 6778899999999999999988753
No 194
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.34 E-value=0.48 Score=32.74 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=7.7
Q ss_pred hCChhhHHHHHHHHhhhc
Q 040780 19 KHLYSSAIFFADKVAALT 36 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~ 36 (95)
.++++.|+-.-+|++.+.
T Consensus 112 ~~~~~~A~~~~~~al~~~ 129 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE 129 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHHHhcc
Confidence 344444444444444443
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.29 E-value=0.37 Score=36.42 Aligned_cols=60 Identities=7% Similarity=0.017 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc----C--Cch---hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT----N--DPA---DVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~----~--~~~---~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
..-+..+..-+.+++.|+.|+-+.+|.+++- | +|+ ++.-+|..|...|+|..|..++++.
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4456667777889999999999999999886 2 333 6777899999999999999988763
No 196
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.04 E-value=0.42 Score=35.32 Aligned_cols=60 Identities=8% Similarity=-0.063 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.++-+..++...+..+.++.|+-+++++++.+| +++-...+-.+|++.|+...|....+.
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566777888999999999999999999998 555666778999999999999877664
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.83 E-value=0.4 Score=29.79 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHHHHhc
Q 040780 21 LYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQCLSM 94 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~eal~~ 94 (95)
.++.|+.|-+|..... +++.. +|.++...+.+.+|+.++++.- ...++...+-.|.++.. .+++++|+..
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~--lg~~y~~g~~~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC--LSLVSNSQINKQKLFQYLSKAC-ELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH--HHHHTCTTSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh--HHHHHHcCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 5788999999987664 44444 9999999999999999888752 24678888999999998 7889988764
No 198
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.55 E-value=0.34 Score=42.60 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=50.7
Q ss_pred HhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 18 SKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 18 ~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
..++|+.|+=+++|+ .+++--+.+|.++...|+++.|+....+. .++...+=.|.|+.++|+|+|++..
T Consensus 1088 ~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 456677777777766 45667778888888888888888877664 3444555568888888888888764
No 199
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.66 E-value=0.81 Score=32.75 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcCCchhH----HHHHH-HHhhCCCHHHHHHHHhcC
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTNDPADV----YMQAQ-ALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~----~llA~-~l~~~~~~~~A~~ll~~~ 65 (95)
-.-+...++|+.|+-+-+|++.+.+++.+. +.++. .++..|++..|+...++.
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345677899999999999999988755432 33443 456889999999888764
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.59 E-value=0.84 Score=33.75 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=27.8
Q ss_pred hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCC-----CHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGR-----HYRRAFHLLNASKIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~-----~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~ 84 (95)
.+.++.|+-|-+|.... ++++..+.+|.+|+ .| ++..|+.++++.- ..++...|-.|.++..
T Consensus 264 ~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAA-DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRR 330 (452)
T ss_dssp GCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHC
Confidence 44444555554444322 34444445554444 33 4555555544432 3344444444444433
No 201
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.25 E-value=1 Score=36.68 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASK 66 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~ 66 (95)
|..-++-.+.++.|+-|+=.|.|.+...|+ -..=+.||.||...|+|..|.-.|.+.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445566678899999999999999999984 5677899999999999999999998864
No 202
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.21 E-value=0.79 Score=29.92 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCchhHHHHHHHHhhCCCHH---HHHHHHhcCc-c-cccChhhHHHHHHHHHHcccHHHHHh
Q 040780 37 NDPADVYMQAQALFLGRHYR---RAFHLLNASK-I-VLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~~~---~A~~ll~~~~-l-~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
+++.+.|-+|-|+.++++.. +++.++..-- . ....-.|.|..|-.++++|+|++|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 58889999999999998773 5677765410 0 11235799999999999999999875
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.93 E-value=1.5 Score=32.33 Aligned_cols=60 Identities=18% Similarity=0.045 Sum_probs=25.7
Q ss_pred ChhhHHHHHHHHhhhcCCchhHHHHHHH-H--hhCCCHHHHHHHHhcCcccccChhhHHHHHHHHH
Q 040780 21 LYSSAIFFADKVAALTNDPADVYMQAQA-L--FLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~-l--~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~ 83 (95)
.++.|+.|-++.. .++++..+.+|.+ + ...|++.+|+.++++. ....++...+-.|.++.
T Consensus 232 d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A-a~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 232 DEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG-RAADQPRAELLLGKLYY 294 (452)
T ss_dssp CHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHH
Confidence 3444444444443 3344444444444 2 2344445554444432 11223444444444444
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.42 E-value=0.48 Score=33.55 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred hCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhCCCHHHHHHHHhcC-----ccc--ccChhhHHHHHHHHHH
Q 040780 19 KHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLGRHYRRAFHLLNAS-----KIV--LRDLRFRYLAAKCLEE 84 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~~~~~~A~~ll~~~-----~l~--~~~~~c~yL~A~c~~~ 84 (95)
.+.++.|+.+.++.....+ + ......+|.+++..|+|..|..++++. +.. .........-++++..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3567777777777766652 1 124456899999999999999888642 111 1123466777999999
Q ss_pred cccHHHHHhc
Q 040780 85 LKEWEQCLSM 94 (95)
Q Consensus 85 l~~~~eal~~ 94 (95)
+|+|++|...
T Consensus 188 ~~~~~~A~~~ 197 (434)
T 4b4t_Q 188 LRNLAKSKAS 197 (434)
T ss_dssp TTCHHHHHHH
T ss_pred hCcHHHHHHH
Confidence 9999998754
No 205
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.24 E-value=2.3 Score=26.87 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC 81 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c 81 (95)
-++...|-++---.--.|..+.|.-.||=+-.... .+-|-+. ..++...|.|.+|..+.+... .|..--++|.|
T Consensus 3 ~~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc 77 (115)
T 2uwj_G 3 TSLIRELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC 77 (115)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH
Confidence 34555566666666778999999999999877766 5555544 778999999999999998852 56666788999
Q ss_pred HHHcccHHHHHh
Q 040780 82 LEELKEWEQCLS 93 (95)
Q Consensus 82 ~~~l~~~~eal~ 93 (95)
-.++|.-.++..
T Consensus 78 e~rlGl~s~le~ 89 (115)
T 2uwj_G 78 EWHLGLGAALDR 89 (115)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhcccHHHHHH
Confidence 999998777654
No 206
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.90 E-value=2.5 Score=26.75 Aligned_cols=85 Identities=15% Similarity=-0.010 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHH
Q 040780 4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCL 82 (95)
Q Consensus 4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~ 82 (95)
++...|-++---.--.|..+.|.-.||=+-.... .+-|-+. ..++...|.|.+|..+.+... .|..--++|.|-
T Consensus 5 ~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce 79 (116)
T 2p58_C 5 KLNVLLAEIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE 79 (116)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence 3444555666666678999999999999877766 5555544 778999999999999999852 566667889999
Q ss_pred HHcccHHHHHh
Q 040780 83 EELKEWEQCLS 93 (95)
Q Consensus 83 ~~l~~~~eal~ 93 (95)
.++|.-.++..
T Consensus 80 ~rlGl~s~le~ 90 (116)
T 2p58_C 80 YRLGLGSALES 90 (116)
T ss_dssp HHHTCHHHHHH
T ss_pred HhcccHHHHHH
Confidence 99998777654
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=89.65 E-value=1.3 Score=33.24 Aligned_cols=50 Identities=8% Similarity=-0.071 Sum_probs=41.5
Q ss_pred HHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 16 CVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 16 ~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
.+-.++++.|+=+.+|.++++++.....++|.++...|++.+|...+.+.
T Consensus 287 ~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45579999999999999999877666678899999999999998887653
No 208
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.13 E-value=1.4 Score=36.34 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 37 NDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 37 ~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
..++....++..+...|+|.-|..++.=. ..++...|+.|+|+++.|++++|..
T Consensus 808 ~~~~~~~~l~~~L~~~~~~~~a~eL~~~~---~~t~~~~yv~gr~~L~~ge~~~A~~ 861 (950)
T 4gq2_M 808 TENDLVTELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVR 861 (950)
T ss_dssp SSCCHHHHHHHHHHHTTCHHHHHHHGGGC---CSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCccHHHHHHHHHHhcHHHHHHHHHhhc---CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555667777788888777766543 3566778999999999999999875
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.98 E-value=2.1 Score=30.19 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch-------hHHHHHHHHhhCCCHHHHHHHHhcC-------cccccCh
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA-------DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDL 72 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~-------~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~ 72 (95)
+-+..+..-+..+++|+.|+-+-.++....+... -...++.++...|++..|+.+.+.. +-...-.
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 3467788889999999999999988887764221 1234577778889999998877542 1111123
Q ss_pred hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+..-.|..+.+.|+|++|+..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHH
Confidence 4556679999999999999865
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.83 E-value=0.6 Score=30.88 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.0
Q ss_pred ChhhHHHHHHHHhhhc-C--CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 21 LYSSAIFFADKVAALT-N--DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~-~--~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
..+.||..=+.++..+ | +.+.+|.+|..+++.|+|.+|...++.-
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4557888888888887 4 5789999999999999999999988763
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.79 E-value=2.2 Score=37.74 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=54.0
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHH-HHHh-hCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHH
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQA-QALF-LGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWE 89 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA-~~l~-~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~ 89 (95)
+-.-+++.++|+.|+-.-+|.- .+..| ..++ ..|++.+|+.+..+. ..+..-+-.|+++.+.|+|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--------~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--------VNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--------CHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHH
Confidence 3445777888999888888851 23332 4445 889999999999874 34666778899999999999
Q ss_pred HHHhc
Q 040780 90 QCLSM 94 (95)
Q Consensus 90 eal~~ 94 (95)
||++.
T Consensus 1123 EAIds 1127 (1630)
T 1xi4_A 1123 EAIDS 1127 (1630)
T ss_pred HHHHH
Confidence 99874
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=87.66 E-value=6.9 Score=29.72 Aligned_cols=86 Identities=13% Similarity=0.000 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLE 83 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~ 83 (95)
...+|.-+...+.++.|.-+-+.+.... |+..+--.+-..+...|+...|..+++. .|+. .+....-..-.+|.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHh
Confidence 5678888999999999998888887654 3433444556778899999999998864 3432 23334444556778
Q ss_pred HcccHHHHHhcC
Q 040780 84 ELKEWEQCLSML 95 (95)
Q Consensus 84 ~l~~~~eal~~L 95 (95)
+.|++++|..+|
T Consensus 187 ~~g~~d~A~~ll 198 (501)
T 4g26_A 187 DTKNADKVYKTL 198 (501)
T ss_dssp HTTCHHHHHHHH
T ss_pred hCCCHHHHHHHH
Confidence 899999998764
No 213
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=85.79 E-value=2.2 Score=31.61 Aligned_cols=71 Identities=11% Similarity=-0.033 Sum_probs=42.9
Q ss_pred hHHHHHHHHhh-hcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccCh-hhHHHHHHHHHHcccHHHHHhc
Q 040780 24 SAIFFADKVAA-LTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDL-RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 24 ~AiF~Aekl~a-~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~-~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.|+-..+|.+. ..| ++.--+.+|..+...|++.+|..+.++.- +.+.++ ..-..+++.....|++++|+.+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 67777788775 565 34444556777777888888877776531 112222 2334456666667777766553
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=85.10 E-value=0.92 Score=30.06 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=39.2
Q ss_pred ChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC-----------CHHHHHHHHhcC
Q 040780 21 LYSSAIFFADKVAALTN-DPADVYMQAQALFLGR-----------HYRRAFHLLNAS 65 (95)
Q Consensus 21 ~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~-----------~~~~A~~ll~~~ 65 (95)
+++.|+-.-++.+.++| .++..|.+|.+|+..| ++..|+..+++.
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 37899999999999997 6778889999999875 899999988764
No 215
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.35 E-value=2.4 Score=35.47 Aligned_cols=53 Identities=23% Similarity=0.172 Sum_probs=39.5
Q ss_pred CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHh
Q 040780 38 DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
..+-+-.+...+...|+|.-+..++.=. ..++..+|+.|+|+++.|++++|..
T Consensus 811 ~~~~~~~l~~~l~~~~~~~~~~~l~~~~---~~~~~~~yl~g~~~L~~ge~~~A~~ 863 (1139)
T 4fhn_B 811 ENDLVTELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVR 863 (1139)
T ss_dssp CSCHHHHHHHHHHHHSCTTHHHHHHHHS---CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHhhhc---cCCcHHHHHHHHHHHhcCCHHHHHH
Confidence 3444556777788888888777766432 4567788999999999999999875
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.50 E-value=2 Score=27.50 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhc-C--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 25 AIFFADKVAALT-N--DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 25 AiF~Aekl~a~~-~--~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+|.+=+.++..+ | .-+-+|.+|..+|+.|+|.+|...++.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666666666654 2 456899999999999999999887765
No 217
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=83.13 E-value=3.6 Score=31.60 Aligned_cols=61 Identities=10% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhh
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRF 74 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c 74 (95)
.++.-|++.++|+-|.-.+.. +...|+.+--+..+|...|++..|+.++++. ++...|.+.
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~---L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ 243 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 243 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHH---HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444444444322222 1123444444555566666666666655543 333444443
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.59 E-value=8.8 Score=25.74 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=50.4
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC----Cc----------------------hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN----DP----------------------ADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~----------------------~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
-+..-...+++|..|+=.-++++.+.+ ++ +=-|..|.|+...|++..|+..+++
T Consensus 68 ~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 68 YHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 334445567777777777766544431 11 3349999999999999999999999
Q ss_pred CcccccChhhHHHHHH
Q 040780 65 SKIVLRDLRFRYLAAK 80 (95)
Q Consensus 65 ~~l~~~~~~c~yL~A~ 80 (95)
-+...+.+..-.+.|+
T Consensus 148 Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 148 IPSRQRTPKINMLLAN 163 (167)
T ss_dssp SCGGGCCHHHHHHHHH
T ss_pred CCchhcCHHHHHHHHH
Confidence 7666778887777766
No 219
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=80.80 E-value=5.8 Score=28.38 Aligned_cols=73 Identities=4% Similarity=-0.096 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHH-HHHHhcC-cc---cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 22 YSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRA-FHLLNAS-KI---VLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 22 y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A-~~ll~~~-~l---~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
++.++-+.++++..+|+..+++ -+..++-..|+...+ ..+..+. .+ ..+++...++.|.++.+.|+.++|+.+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8899999999999998777777 446677777775543 3355442 11 256778889999999999999999864
No 220
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.50 E-value=2.9 Score=27.50 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhcC--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 24 SAIFFADKVAALTN--DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 24 ~AiF~Aekl~a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+|.+-|.++..++ .-+-+|.+|..+|+.|+|.+|...++.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45666666666554 467899999999999999999887765
No 221
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=80.17 E-value=11 Score=29.03 Aligned_cols=78 Identities=4% Similarity=-0.046 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCC-CHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGR-HYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE 84 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~-~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~ 84 (95)
.-|.|+-..+....|+.|+-+.+|++.+++....+|-+ +-++...| .+.+++...++. ..+..+...-+-.+..+.+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 34556665554447799999999999998755555544 66777778 888888877654 2223333333333444444
Q ss_pred c
Q 040780 85 L 85 (95)
Q Consensus 85 l 85 (95)
+
T Consensus 191 l 191 (567)
T 1dce_A 191 L 191 (567)
T ss_dssp H
T ss_pred h
Confidence 3
No 222
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=79.40 E-value=15 Score=26.97 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcCCchh-HHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTNDPAD-VYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~-~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
.++. ....+.++.|.-.-|+++...|+... -..++......|++..|..++++.
T Consensus 18 ~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 18 ILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444 36689999999999999999985444 456799999999999999999875
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.13 E-value=17 Score=28.75 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=53.5
Q ss_pred HHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCccc-ccChhhHHHHHHHHHHcccHHHHHh
Q 040780 15 DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIV-LRDLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 15 ~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~-~~~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
..+..+.-.++..|.++......+.+.+-+.+---.+.|++..|...++.-.-. .....-.|=.|+...++|+-++|..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 261 RLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp TSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence 344444466777787776554455455556655556779999998888764322 1345567999999888998888765
Q ss_pred c
Q 040780 94 M 94 (95)
Q Consensus 94 ~ 94 (95)
.
T Consensus 341 ~ 341 (618)
T 1qsa_A 341 I 341 (618)
T ss_dssp H
T ss_pred H
Confidence 3
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.20 E-value=3.7 Score=26.65 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhhcC--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 24 SAIFFADKVAALTN--DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 24 ~AiF~Aekl~a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+|-+=+.++..++ .-+-+|.+|..+|+.|+|.+|...++.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46666666666554 466899999999999999999988875
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=74.04 E-value=11 Score=28.17 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 44 MQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 44 llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.+|..+...|++..|+..+++.-....+.....+.|++..-.|++++|+..
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355667778999999998887532234445556779999999999998864
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=73.68 E-value=5.7 Score=29.07 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhhcCC--chhHHHH-HHHHhh-----CCCHHHHHHHHhcCc-cccc-ChhhHHHHHHHHHH-cccHHHH
Q 040780 23 SSAIFFADKVAALTND--PADVYMQ-AQALFL-----GRHYRRAFHLLNASK-IVLR-DLRFRYLAAKCLEE-LKEWEQC 91 (95)
Q Consensus 23 ~~AiF~Aekl~a~~~~--~~~~~ll-A~~l~~-----~~~~~~A~~ll~~~~-l~~~-~~~c~yL~A~c~~~-l~~~~ea 91 (95)
+.|.=..||++.++|+ ..+.|.. |.-|+. -|+..+|...+++.- +.+. ++...|.+|.-+.. .++++++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4566667888888876 3345554 444444 288888888877642 2232 37788888888877 4778777
Q ss_pred Hhc
Q 040780 92 LSM 94 (95)
Q Consensus 92 l~~ 94 (95)
...
T Consensus 260 ~~~ 262 (301)
T 3u64_A 260 DEA 262 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 227
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.27 E-value=5.6 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA 40 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~ 40 (95)
+--||..+..+....+|.+|..+|.|++.+.++++
T Consensus 207 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 207 TNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 45689999999999999999999999999988644
No 228
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.53 E-value=15 Score=30.26 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
++..++..++|+ ++-.+....+ ++-+.|++|.|+...|+++.|....++.
T Consensus 816 l~~~L~~~~~~~----~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYN----ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHH----HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHH----HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666665 3344555554 7778999999999999999999999864
No 229
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.96 E-value=7.5 Score=28.67 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch
Q 040780 6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA 40 (95)
Q Consensus 6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~ 40 (95)
+--||..+..+....+|.+|..+|.|++.+.++++
T Consensus 198 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 198 ILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 44689999999999999999999999999977644
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=59.87 E-value=55 Score=24.89 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=13.3
Q ss_pred HHHHHHHHHhCChhhHHHHHHH
Q 040780 10 RGVVRDCVSKHLYSSAIFFADK 31 (95)
Q Consensus 10 r~~v~~~l~~~~y~~AiF~Aek 31 (95)
+.+-+.++.+++++.|+-.-.+
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666777777666554333
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=58.75 E-value=15 Score=29.99 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=37.3
Q ss_pred HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780 46 AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 46 A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~L 95 (95)
|.=+...|+|.-|..+.++. ...+..-.+=|..|+|+.++|+|+.|+-+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 33445678999999988874 222344567799999999999999998653
No 232
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.14 E-value=25 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=38.7
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS 65 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~ 65 (95)
.++...+..++|+-|. .+....+ ++-+.|++|.|++..|++..|+...++.
T Consensus 817 ~l~~~l~~~~~~~~~~----~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHH----HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHH----HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4555666777776543 3444443 7778999999999999999999999765
No 233
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=56.53 E-value=19 Score=28.47 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccH
Q 040780 28 FADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 28 ~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
-|.|++.+-++.+.+.-.|+-.+..|+|.-|.++++.-- ..+.+...|.|.|.++.+++.-
T Consensus 438 ~a~~~v~~~gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 438 SAGRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 356666666777788888999999999999999887521 1245677888999988887643
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=56.08 E-value=42 Score=22.40 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=13.4
Q ss_pred HHHHHHhCChhhHHHHHHHH
Q 040780 13 VRDCVSKHLYSSAIFFADKV 32 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl 32 (95)
..-+|+.++++.|.-.|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l 31 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL 31 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh
Confidence 44566677777777777665
No 235
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=55.32 E-value=26 Score=19.65 Aligned_cols=50 Identities=22% Similarity=0.138 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRA 58 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A 58 (95)
|-++---.--.|..+.|.-.||=+-......+-|-+. +.++...|.|.+|
T Consensus 9 LAe~AL~~TG~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~A 59 (61)
T 3ph0_C 9 LAELALAGTGHHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRA 59 (61)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHh
Confidence 3333333334444555555555444443333322222 3444444444443
No 236
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=53.95 E-value=56 Score=23.13 Aligned_cols=86 Identities=7% Similarity=-0.020 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHhhhcCCchhHHHH-HHHHhhCC--CHHHHHHHHhcCc-ccccChhhHHHHHHHH
Q 040780 8 KLRGVVRDCVSKHLYS-SAIFFADKVAALTNDPADVYMQ-AQALFLGR--HYRRAFHLLNASK-IVLRDLRFRYLAAKCL 82 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~-~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~--~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~ 82 (95)
.+.+.+...+..+.|+ .|+-.-++++.++|+...++.. +.++...| .+..++.++...- ..+++...=+--+.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3444445555677774 8999999999999976666544 88999999 9999998886531 1233333333333344
Q ss_pred ----HHc---ccHHHHHh
Q 040780 83 ----EEL---KEWEQCLS 93 (95)
Q Consensus 83 ----~~l---~~~~eal~ 93 (95)
..+ +++++++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHTTTCCCTHHHHH
T ss_pred HHHHHhccccCCHHHHHH
Confidence 445 56777664
No 237
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=53.64 E-value=60 Score=23.43 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCChh-hHHHHHHHHhhhcCCchhHHHH-HHHHhhCCC----------HHHHHHHHhcCc-ccccChhhHH
Q 040780 10 RGVVRDCVSKHLYS-SAIFFADKVAALTNDPADVYMQ-AQALFLGRH----------YRRAFHLLNASK-IVLRDLRFRY 76 (95)
Q Consensus 10 r~~v~~~l~~~~y~-~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~----------~~~A~~ll~~~~-l~~~~~~c~y 76 (95)
++.|......+.|+ .|+-+.++++.++|+...++-+ +.++...|. +..++.++...- ..+++...=+
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34444555677776 5788888888888765555443 445544443 456666554321 1234444433
Q ss_pred HHHHHHHHccc--HHHHHh
Q 040780 77 LAAKCLEELKE--WEQCLS 93 (95)
Q Consensus 77 L~A~c~~~l~~--~~eal~ 93 (95)
=-+.++..+++ |++++.
T Consensus 113 hR~wlL~~l~~~~~~~EL~ 131 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELE 131 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHhccCcccHHHHHH
Confidence 33455555663 666554
No 238
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=53.44 E-value=55 Score=24.66 Aligned_cols=56 Identities=5% Similarity=-0.010 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
...+|.-+...+..+.|.-+-+.+.... |+....-.+-.++...|+..+|..+++.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 5578888999999999999999987765 4555666677899999999999999976
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=52.22 E-value=29 Score=25.27 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=41.8
Q ss_pred hCChhhHHHHHHHHhhhcC--CchhHHHHHHHHhhC-CCHHHHHHHHhcC
Q 040780 19 KHLYSSAIFFADKVAALTN--DPADVYMQAQALFLG-RHYRRAFHLLNAS 65 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~--~~~~~~llA~~l~~~-~~~~~A~~ll~~~ 65 (95)
-+..+.|...=||.++++| +++.-+.+|.-+... |++..+...+++.
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3789999999999999997 489999999999885 9999999988763
No 240
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=52.03 E-value=78 Score=24.23 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCC--------hhhHHHHHHHHhhhcCCchhH-HHHHHHHhhCC--CHHHHHHHHhcC-cccccChhhH
Q 040780 8 KLRGVVRDCVSKHL--------YSSAIFFADKVAALTNDPADV-YMQAQALFLGR--HYRRAFHLLNAS-KIVLRDLRFR 75 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~--------y~~AiF~Aekl~a~~~~~~~~-~llA~~l~~~~--~~~~A~~ll~~~-~l~~~~~~c~ 75 (95)
..|..+-..+.... |+.|+-+.|+++..+|....+ +--+-++...| ++.+++..+++. ..+.++..+=
T Consensus 67 ~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW 146 (567)
T 1dce_A 67 NCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW 146 (567)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHH
Confidence 44555555554422 999999999999999754444 44488888999 679999988764 2334555555
Q ss_pred HHHHHHHHHcc-cHHHHHh
Q 040780 76 YLAAKCLEELK-EWEQCLS 93 (95)
Q Consensus 76 yL~A~c~~~l~-~~~eal~ 93 (95)
+=-+.+...++ .++++++
T Consensus 147 ~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 147 DYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHH
Confidence 55566667788 7887764
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=51.69 E-value=52 Score=22.89 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=52.0
Q ss_pred hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC---cccc----------------cChhhHHHHH
Q 040780 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS---KIVL----------------RDLRFRYLAA 79 (95)
Q Consensus 19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~---~l~~----------------~~~~c~yL~A 79 (95)
++.|.-|+|.--++ +...++|.-+.|+...++|+.|+.-+++- +... .-..+--+.|
T Consensus 46 ngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 46 NGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp TTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred cchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 67788888853222 45679999999999999999998877652 1110 0123556789
Q ss_pred HHHHHcccHHHHHh
Q 040780 80 KCLEELKEWEQCLS 93 (95)
Q Consensus 80 ~c~~~l~~~~eal~ 93 (95)
.-|...+.-+|||.
T Consensus 122 ~lltq~g~r~EaI~ 135 (242)
T 3kae_A 122 DLCTLSGYREEGIG 135 (242)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHhcCHHHhhh
Confidence 99999999999985
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.56 E-value=81 Score=23.46 Aligned_cols=83 Identities=8% Similarity=0.135 Sum_probs=59.3
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhhhcCCch------hHHHH-HHHHhhCCCHHHHHHHHhcCcc----ccc----ChhhH
Q 040780 11 GVVRDCVSKHLYSSAIFFADKVAALTNDPA------DVYMQ-AQALFLGRHYRRAFHLLNASKI----VLR----DLRFR 75 (95)
Q Consensus 11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~------~~~ll-A~~l~~~~~~~~A~~ll~~~~l----~~~----~~~c~ 75 (95)
.++.-+++.+.|..|+=+-.++....+..+ .+|++ .+.++..|++..+-..+.+..- ... ....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 566788999999999999999988875322 34444 6788899999999877765310 001 22346
Q ss_pred HHHHHHHH-HcccHHHHHh
Q 040780 76 YLAAKCLE-ELKEWEQCLS 93 (95)
Q Consensus 76 yL~A~c~~-~l~~~~eal~ 93 (95)
...|..+. ..++|.+|-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~ 202 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFS 202 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHH
Confidence 66788888 7888988753
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=43.11 E-value=89 Score=22.54 Aligned_cols=23 Identities=13% Similarity=-0.165 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHHcccHHHHHh
Q 040780 71 DLRFRYLAAKCLEELKEWEQCLS 93 (95)
Q Consensus 71 ~~~c~yL~A~c~~~l~~~~eal~ 93 (95)
++....+.|..+.+-+++.+|..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHH
Confidence 66778888999999889888875
No 244
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=41.88 E-value=63 Score=21.46 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780 41 DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW 88 (95)
Q Consensus 41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~ 88 (95)
..+.-|.-.|.+.+|-.++.-+++.....-...-.|..|.+..+....
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~L 57 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESL 57 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCC
Confidence 456667788888899988888888765555567788888888876553
No 245
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=41.68 E-value=96 Score=22.33 Aligned_cols=56 Identities=2% Similarity=-0.053 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCC-HHHHHHHHhc
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRH-YRRAFHLLNA 64 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~-~~~A~~ll~~ 64 (95)
-|.++-..+....|+.++-+.++++..+|....++.+ +-++...|. +..++...++
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3445544443335778888888888877654544443 555566666 4666655543
No 246
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=39.86 E-value=47 Score=18.54 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc
Q 040780 3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALT 36 (95)
Q Consensus 3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~ 36 (95)
.+.+..|+.....+.+...|+.|.-+=|++-++.
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988774
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=39.56 E-value=69 Score=20.07 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=40.0
Q ss_pred HHHHHHHhhhcC--CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780 26 IFFADKVAALTN--DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 26 iF~Aekl~a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.-+||-.+.-++ -.+-.-..|.|+-..|+ .++..+|+.. ++..-|+|++|...
T Consensus 7 ~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~s---------------SLmNrG~Yq~Al~l 61 (115)
T 2uwj_G 7 RELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLIRIS---------------SLANQGRYQEALAF 61 (115)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHH---------------HHHHTTCHHHHHGG
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHH---------------HHHcchhHHHHHHh
Confidence 356888777775 46678889999999999 9999988863 23456778887654
No 248
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.62 E-value=31 Score=18.80 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHH
Q 040780 2 REEEIEKLRGVVR 14 (95)
Q Consensus 2 ~~~~~~~Lr~~v~ 14 (95)
|+|++++|+.-..
T Consensus 31 REElvdRLk~Y~~ 43 (58)
T 2do5_A 31 REELVERLQSYTR 43 (58)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7899999987543
No 249
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=38.32 E-value=9.6 Score=30.47 Aligned_cols=63 Identities=21% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHH
Q 040780 28 FADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQ 90 (95)
Q Consensus 28 ~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~e 90 (95)
-|.|++.+-++.+.|.-.|+-.|..|+|.-|.++++.-- ..+.+...|.|.|.++.+++.-.|
T Consensus 450 ~a~~~v~~~Gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 450 AGKRYVEAMGGADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 355666666677888889999999999999999887631 124566788888888888876544
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.89 E-value=1.2e+02 Score=20.16 Aligned_cols=77 Identities=6% Similarity=-0.038 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHccc
Q 040780 8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKE 87 (95)
Q Consensus 8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~ 87 (95)
.-+.+-..++.+++++ +||+.+.-.++.+.+.+|..+ +|+-..-..+.+-... ... --++-.|.+-+|+
T Consensus 36 ~Wk~Lg~~AL~~gn~~----lAe~cy~~~~D~~~L~~Ly~~---tg~~e~L~kla~iA~~-~g~---~n~af~~~l~lGd 104 (177)
T 3mkq_B 36 TWERLIQEALAQGNAS----LAEMIYQTQHSFDKLSFLYLV---TGDVNKLSKMQNIAQT-RED---FGSMLLNTFYNNS 104 (177)
T ss_dssp HHHHHHHHHHHTTCHH----HHHHHHHHTTCHHHHHHHHHH---HTCHHHHHHHHHHHHH-TTC---HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCChH----HHHHHHHHhCCHHHHHHHHHH---hCCHHHHHHHHHHHHH-Ccc---HHHHHHHHHHcCC
Confidence 3455566677777765 445555555666666555444 3333222222111100 011 1334456667777
Q ss_pred HHHHHhcC
Q 040780 88 WEQCLSML 95 (95)
Q Consensus 88 ~~eal~~L 95 (95)
+++++++|
T Consensus 105 v~~~i~lL 112 (177)
T 3mkq_B 105 TKERSSIF 112 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 251
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.78 E-value=1.5e+02 Score=21.48 Aligned_cols=74 Identities=7% Similarity=-0.146 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCH--------------------HHHHHHHhcCcccc-------cChh
Q 040780 22 YSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHY--------------------RRAFHLLNASKIVL-------RDLR 73 (95)
Q Consensus 22 y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~--------------------~~A~~ll~~~~l~~-------~~~~ 73 (95)
+++++-+.++.+.++|+..+++.+ .-.+-..|+. ..........--.. +++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Q ss_pred hHHHHHHHHHHcccHHHHHhcC
Q 040780 74 FRYLAAKCLEELKEWEQCLSML 95 (95)
Q Consensus 74 c~yL~A~c~~~l~~~~eal~~L 95 (95)
...+.|.++.+.++.++|+.++
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHH
No 252
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.63 E-value=1.7e+02 Score=22.06 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCChhhHHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFAD 30 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Ae 30 (95)
+...++-+...++|+.+.|+..
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~ 718 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHS 718 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHccChhhhHHHHH
Confidence 3445555666677777777643
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=30.21 E-value=88 Score=24.63 Aligned_cols=53 Identities=15% Similarity=0.052 Sum_probs=42.2
Q ss_pred HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
.+...|..++++.|.-|-+++-.... .+.-.||+|..+-..|+...|-.+++.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34457888999999999998866442 566799999999999999988776543
No 254
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=28.05 E-value=63 Score=18.05 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhh
Q 040780 9 LRGVVRDCVSKHLYSSAIFFADKVAAL 35 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~ 35 (95)
|+++=.+-+..+......||+.+..-+
T Consensus 29 L~qLyk~LV~s~vIse~eFW~~r~~ll 55 (61)
T 2dii_A 29 LFQLYKDLVVSQVISAEEFWANRLNVN 55 (61)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHhh
Confidence 445555667788999999999997543
No 255
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.19 E-value=1.2e+02 Score=23.93 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC
Q 040780 7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGR 53 (95)
Q Consensus 7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~ 53 (95)
+.+....+.+.+.+.|.=|.-+.+.++..+| +.+.-.++|.+|-..|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999996 6777888898887665
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.16 E-value=1.6e+02 Score=21.03 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780 13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64 (95)
Q Consensus 13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~ 64 (95)
+.+.+..++.++|+=...--+--+| +.+--..|.+-|..+|++.||..=|+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455677888888877777666666 666778889999999999999887664
No 257
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=24.99 E-value=49 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCChhhHHHHH
Q 040780 9 LRGVVRDCVSKHLYSSAIFFA 29 (95)
Q Consensus 9 Lr~~v~~~l~~~~y~~AiF~A 29 (95)
+...|+.|++.+.+.+|+++|
T Consensus 159 ~e~AV~~cl~~~r~adAllLA 179 (399)
T 2pm7_A 159 IKSAVKNSLENDLMMEAMVIA 179 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHH
Confidence 567888899999998888877
No 258
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.93 E-value=52 Score=20.09 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.8
Q ss_pred HHHHHHcccHHHHHh
Q 040780 79 AKCLEELKEWEQCLS 93 (95)
Q Consensus 79 A~c~~~l~~~~eal~ 93 (95)
|.-+++-++|+|||.
T Consensus 22 Ae~ll~~gkydeAIe 36 (97)
T 2crb_A 22 ADRLLAAGKYEEAIS 36 (97)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHhcCCHHHHHH
Confidence 566677778888764
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=22.64 E-value=2.2e+02 Score=20.49 Aligned_cols=78 Identities=8% Similarity=-0.164 Sum_probs=53.7
Q ss_pred HHhCChhhHHHHHHHHhhhcCC-----------------------chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh
Q 040780 17 VSKHLYSSAIFFADKVAALTND-----------------------PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL 72 (95)
Q Consensus 17 l~~~~y~~AiF~Aekl~a~~~~-----------------------~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~ 72 (95)
...+..+.|+-..++++++-.. ...+-.++..+...|++..++..+..- ..++-+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3456677777777777766521 013334677888999999998766542 1223456
Q ss_pred hhHHHHHHHHHHcccHHHHHhc
Q 040780 73 RFRYLAAKCLEELKEWEQCLSM 94 (95)
Q Consensus 73 ~c~yL~A~c~~~l~~~~eal~~ 94 (95)
.......++++..|+..+|+.+
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~ 227 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGA 227 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 6778889999999999999864
No 260
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=21.75 E-value=1.3e+02 Score=17.65 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--C--CchhHHH
Q 040780 1 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--N--DPADVYM 44 (95)
Q Consensus 1 ~~~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~--~~~~~~l 44 (95)
|+++.-++.++++.+++.++.= .++.-|+++--.- + +|+++--
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E-~~Ly~~q~fs~~~iek~i~PEeiV~ 49 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTE-TSLYQAQKFSRKTIEHQIPPEEIIS 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccH-HHHHHHHHhhHHHHHcCCCHHHHHH
Confidence 3567788999999999998887 9999999875544 3 6775543
Done!