Query 040781
Match_columns 316
No_of_seqs 167 out of 2429
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 99.9 1.1E-24 2.4E-29 200.1 21.3 198 78-293 346-555 (571)
2 KOG4441 Proteins containing BT 99.9 1.4E-24 3.1E-29 199.4 21.7 216 64-299 285-514 (571)
3 PHA02713 hypothetical protein; 99.9 5.7E-24 1.2E-28 196.1 21.8 200 82-299 273-504 (557)
4 PHA02713 hypothetical protein; 99.9 3.3E-23 7.1E-28 191.1 21.5 193 80-293 319-542 (557)
5 PHA02790 Kelch-like protein; P 99.9 8.9E-23 1.9E-27 185.6 23.5 193 66-279 274-470 (480)
6 PHA03098 kelch-like protein; P 99.9 4.2E-22 9.2E-27 184.7 23.9 198 81-296 311-523 (534)
7 PLN02153 epithiospecifier prot 99.9 1.6E-20 3.5E-25 164.4 24.2 221 65-297 34-302 (341)
8 PLN02193 nitrile-specifier pro 99.9 1.3E-19 2.9E-24 164.4 24.2 219 64-295 176-421 (470)
9 PHA03098 kelch-like protein; P 99.9 5E-20 1.1E-24 170.9 20.4 197 84-297 267-477 (534)
10 TIGR03548 mutarot_permut cycli 99.9 1.6E-19 3.5E-24 157.0 22.2 193 64-267 73-315 (323)
11 TIGR03547 muta_rot_YjhT mutatr 99.8 3.4E-19 7.3E-24 156.5 22.8 205 82-298 30-312 (346)
12 TIGR03547 muta_rot_YjhT mutatr 99.8 5.6E-19 1.2E-23 155.1 23.3 179 80-266 84-332 (346)
13 TIGR03548 mutarot_permut cycli 99.8 1.6E-18 3.4E-23 150.7 22.5 176 82-265 40-233 (323)
14 PLN02153 epithiospecifier prot 99.8 1.6E-18 3.4E-23 151.8 22.6 220 36-266 50-325 (341)
15 PHA02790 Kelch-like protein; P 99.8 9.3E-19 2E-23 159.4 18.5 158 112-297 270-436 (480)
16 PRK14131 N-acetylneuraminic ac 99.8 8.1E-18 1.8E-22 149.0 21.4 190 80-279 105-366 (376)
17 PLN02193 nitrile-specifier pro 99.8 1.9E-17 4.1E-22 150.5 23.5 202 64-279 229-466 (470)
18 PRK14131 N-acetylneuraminic ac 99.8 2E-17 4.3E-22 146.6 19.3 178 108-297 33-261 (376)
19 TIGR01640 F_box_assoc_1 F-box 99.7 8.6E-17 1.9E-21 133.0 15.6 172 111-296 3-189 (230)
20 KOG4693 Uncharacterized conser 99.7 4.8E-16 1E-20 123.9 13.8 200 81-293 44-285 (392)
21 KOG0379 Kelch repeat-containin 99.6 3E-14 6.4E-19 129.4 20.3 202 82-295 89-312 (482)
22 KOG4693 Uncharacterized conser 99.6 1.7E-14 3.7E-19 115.1 14.2 191 66-266 91-313 (392)
23 PLN03215 ascorbic acid mannose 99.5 1.2E-12 2.5E-17 112.6 18.6 267 15-312 1-320 (373)
24 KOG0379 Kelch repeat-containin 99.5 4.4E-12 9.6E-17 115.3 17.5 167 112-291 69-256 (482)
25 KOG1230 Protein containing rep 99.4 3.5E-11 7.6E-16 101.9 14.9 163 123-293 98-289 (521)
26 KOG1230 Protein containing rep 99.3 1.1E-10 2.3E-15 99.1 16.0 176 81-266 98-318 (521)
27 COG3055 Uncharacterized protei 99.2 8.8E-10 1.9E-14 92.2 13.8 199 90-298 69-340 (381)
28 KOG4152 Host cell transcriptio 99.0 2.1E-09 4.5E-14 93.7 11.3 210 63-290 42-308 (830)
29 PF12937 F-box-like: F-box-lik 99.0 3.1E-10 6.7E-15 68.6 3.8 38 18-55 1-38 (47)
30 KOG4152 Host cell transcriptio 98.9 1.4E-08 3.1E-13 88.6 11.1 170 114-299 43-258 (830)
31 COG3055 Uncharacterized protei 98.9 5.5E-08 1.2E-12 81.6 13.4 176 111-298 44-269 (381)
32 PF00646 F-box: F-box domain; 98.8 1.9E-09 4.2E-14 65.5 1.0 39 17-55 2-40 (48)
33 PF13964 Kelch_6: Kelch motif 98.8 4.6E-08 1E-12 59.8 6.8 48 144-191 1-48 (50)
34 smart00256 FBOX A Receptor for 98.7 1.1E-08 2.5E-13 59.7 3.7 35 21-55 1-35 (41)
35 PF08268 FBA_3: F-box associat 98.5 2.1E-07 4.5E-12 69.5 6.2 93 203-300 1-97 (129)
36 PF01344 Kelch_1: Kelch motif; 98.5 1E-07 2.2E-12 57.5 3.2 47 144-190 1-47 (47)
37 PF07646 Kelch_2: Kelch motif; 98.3 2.7E-06 5.8E-11 51.6 6.2 47 144-190 1-49 (49)
38 PF13964 Kelch_6: Kelch motif 98.3 2E-06 4.2E-11 52.5 5.1 38 108-145 6-50 (50)
39 KOG0281 Beta-TrCP (transducin 98.2 0.00014 3E-09 61.2 15.4 38 18-55 75-116 (499)
40 smart00612 Kelch Kelch domain. 98.1 9.8E-06 2.1E-10 48.5 5.1 46 156-208 1-46 (47)
41 PF13418 Kelch_4: Galactose ox 98.1 4.9E-06 1.1E-10 50.5 3.6 47 144-190 1-48 (49)
42 KOG2120 SCF ubiquitin ligase, 98.1 4.1E-06 8.9E-11 69.3 3.9 49 5-55 87-135 (419)
43 PF07893 DUF1668: Protein of u 98.0 0.00025 5.3E-09 62.1 14.1 129 112-240 75-222 (342)
44 PF01344 Kelch_1: Kelch motif; 98.0 8.3E-06 1.8E-10 49.0 3.2 36 203-238 6-47 (47)
45 PF13415 Kelch_3: Galactose ox 97.8 7.2E-05 1.6E-09 45.3 5.6 43 154-198 1-44 (49)
46 PF13415 Kelch_3: Galactose ox 97.8 5.4E-05 1.2E-09 45.8 4.9 40 113-152 1-48 (49)
47 smart00612 Kelch Kelch domain. 97.8 7.3E-05 1.6E-09 44.6 5.0 39 116-154 2-46 (47)
48 PF07734 FBA_1: F-box associat 97.7 0.00012 2.6E-09 57.0 6.7 86 204-295 2-94 (164)
49 PF07646 Kelch_2: Kelch motif; 97.6 0.00015 3.2E-09 43.9 4.8 35 203-237 6-48 (49)
50 KOG2437 Muskelin [Signal trans 97.5 0.00018 3.9E-09 63.5 5.9 130 129-266 235-396 (723)
51 PF13418 Kelch_4: Galactose ox 97.5 0.00021 4.5E-09 43.2 3.9 36 203-238 6-48 (49)
52 PLN02772 guanylate kinase 97.3 0.0034 7.3E-08 55.2 10.8 81 144-229 24-110 (398)
53 PF07250 Glyoxal_oxid_N: Glyox 97.0 0.017 3.6E-07 47.7 11.6 141 85-240 50-211 (243)
54 PF13854 Kelch_5: Kelch motif 96.9 0.0035 7.5E-08 36.4 5.3 40 141-180 1-41 (42)
55 PF07250 Glyoxal_oxid_N: Glyox 96.8 0.023 5E-07 46.9 10.6 156 122-297 45-211 (243)
56 KOG2437 Muskelin [Signal trans 96.3 0.007 1.5E-07 53.9 5.1 162 64-230 273-474 (723)
57 KOG0274 Cdc4 and related F-box 96.2 0.38 8.3E-06 44.8 16.2 38 18-55 108-145 (537)
58 PLN02772 guanylate kinase 96.2 0.043 9.3E-07 48.4 9.2 73 203-282 29-109 (398)
59 TIGR01640 F_box_assoc_1 F-box 96.0 0.71 1.5E-05 37.9 16.9 177 83-263 16-215 (230)
60 COG4257 Vgb Streptogramin lyas 95.2 0.47 1E-05 39.5 11.2 114 114-240 200-317 (353)
61 PRK11138 outer membrane biogen 95.2 1.9 4.2E-05 38.6 16.4 105 112-233 68-186 (394)
62 PF12768 Rax2: Cortical protei 95.1 0.93 2E-05 38.5 13.0 108 122-236 15-130 (281)
63 PF13360 PQQ_2: PQQ-like domai 95.1 1.6 3.4E-05 35.8 17.8 160 82-262 47-219 (238)
64 PF07893 DUF1668: Protein of u 95.0 2.3 5E-05 37.4 17.1 102 83-191 88-221 (342)
65 KOG2997 F-box protein FBX9 [Ge 94.9 0.018 3.9E-07 48.4 2.3 38 18-55 107-149 (366)
66 PF13854 Kelch_5: Kelch motif 94.8 0.1 2.3E-06 30.1 4.7 31 194-228 4-41 (42)
67 PRK11138 outer membrane biogen 94.2 2.3 5E-05 38.2 14.4 124 112-263 255-384 (394)
68 TIGR03300 assembly_YfgL outer 94.2 2.4 5.1E-05 37.7 14.4 127 112-264 240-370 (377)
69 PF12768 Rax2: Cortical protei 93.9 1.1 2.5E-05 38.0 11.0 61 169-236 14-81 (281)
70 PF08450 SGL: SMP-30/Gluconola 93.6 3.3 7.1E-05 34.3 13.5 134 82-230 23-167 (246)
71 PF05096 Glu_cyclase_2: Glutam 93.4 1.2 2.5E-05 37.3 9.9 103 112-229 54-159 (264)
72 PF13360 PQQ_2: PQQ-like domai 93.4 3.7 8.1E-05 33.5 16.6 165 83-265 5-183 (238)
73 KOG0316 Conserved WD40 repeat- 92.7 4.8 0.0001 32.9 13.1 117 108-238 23-142 (307)
74 KOG0286 G-protein beta subunit 92.2 4.9 0.00011 33.9 11.8 139 123-279 77-217 (343)
75 KOG2055 WD40 repeat protein [G 91.8 7.5 0.00016 34.9 13.1 103 115-230 272-377 (514)
76 PF10282 Lactonase: Lactonase, 91.6 2.6 5.6E-05 37.1 10.7 146 113-279 155-322 (345)
77 KOG0310 Conserved WD40 repeat- 91.5 9.8 0.00021 34.3 13.6 144 113-279 79-225 (487)
78 PRK11028 6-phosphogluconolacto 90.7 11 0.00023 32.8 15.4 102 115-228 3-111 (330)
79 PLN03215 ascorbic acid mannose 90.6 12 0.00026 33.2 13.6 134 90-230 189-349 (373)
80 TIGR03866 PQQ_ABC_repeats PQQ- 90.1 4.9 0.00011 33.8 10.8 99 116-230 3-106 (300)
81 KOG4341 F-box protein containi 89.9 0.32 6.9E-06 43.0 3.2 38 18-55 72-109 (483)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.7 12 0.00025 35.2 13.5 110 112-233 68-197 (527)
83 PF05096 Glu_cyclase_2: Glutam 89.7 4.6 0.0001 33.8 9.6 99 149-264 49-148 (264)
84 PRK11028 6-phosphogluconolacto 89.6 13 0.00028 32.3 13.6 149 112-279 136-304 (330)
85 COG4257 Vgb Streptogramin lyas 89.5 12 0.00025 31.6 12.5 133 114-260 159-291 (353)
86 TIGR03300 assembly_YfgL outer 88.3 18 0.00038 32.1 19.2 131 83-232 77-215 (377)
87 PF08450 SGL: SMP-30/Gluconola 88.0 10 0.00023 31.3 11.1 101 113-230 11-125 (246)
88 KOG0310 Conserved WD40 repeat- 87.6 4 8.6E-05 36.7 8.3 138 119-279 44-184 (487)
89 PLN02919 haloacid dehalogenase 87.4 36 0.00078 35.1 16.1 114 113-232 694-838 (1057)
90 COG2706 3-carboxymuconate cycl 85.9 23 0.00049 30.8 14.3 108 114-228 157-275 (346)
91 KOG0316 Conserved WD40 repeat- 85.3 20 0.00042 29.5 11.4 106 111-230 69-176 (307)
92 PF03178 CPSF_A: CPSF A subuni 82.7 20 0.00042 31.1 10.6 100 123-236 62-168 (321)
93 KOG0639 Transducin-like enhanc 81.6 22 0.00049 32.5 10.3 66 154-230 476-542 (705)
94 PLN00181 protein SPA1-RELATED; 81.0 51 0.0011 32.8 14.0 101 114-229 588-692 (793)
95 KOG2321 WD40 repeat protein [G 80.9 21 0.00046 33.2 10.0 109 114-230 146-261 (703)
96 PLN00181 protein SPA1-RELATED; 80.5 64 0.0014 32.1 14.5 95 121-230 553-651 (793)
97 KOG0291 WD40-repeat-containing 79.6 63 0.0014 31.4 14.3 104 154-279 361-466 (893)
98 KOG2055 WD40 repeat protein [G 79.3 24 0.00053 31.8 9.6 130 84-227 283-417 (514)
99 cd00216 PQQ_DH Dehydrogenases 78.4 57 0.0012 30.3 12.8 111 112-233 60-191 (488)
100 PRK00178 tolB translocation pr 76.9 58 0.0013 29.5 16.3 104 122-235 222-327 (430)
101 PRK13684 Ycf48-like protein; P 76.5 52 0.0011 28.8 15.4 158 90-265 161-323 (334)
102 PF03178 CPSF_A: CPSF A subuni 76.3 26 0.00057 30.3 9.4 106 155-279 42-157 (321)
103 KOG0285 Pleiotropic regulator 75.9 16 0.00034 31.9 7.4 74 203-284 365-442 (460)
104 PRK04043 tolB translocation pr 75.5 64 0.0014 29.3 14.3 104 122-235 212-317 (419)
105 PRK04792 tolB translocation pr 75.0 68 0.0015 29.4 20.1 114 112-235 272-390 (448)
106 TIGR03074 PQQ_membr_DH membran 74.8 93 0.002 30.9 13.9 28 112-139 193-222 (764)
107 KOG1332 Vesicle coat complex C 74.4 24 0.00053 29.2 7.7 107 171-293 185-296 (299)
108 KOG0640 mRNA cleavage stimulat 74.2 31 0.00068 29.6 8.6 93 170-279 237-335 (430)
109 TIGR03866 PQQ_ABC_repeats PQQ- 73.3 53 0.0012 27.4 16.9 101 113-230 42-148 (300)
110 PF03088 Str_synth: Strictosid 73.1 4.9 0.00011 27.6 3.1 28 208-235 9-53 (89)
111 PLN02919 haloacid dehalogenase 73.1 86 0.0019 32.4 13.1 113 112-230 750-891 (1057)
112 KOG4649 PQQ (pyrrolo-quinoline 72.4 58 0.0012 27.4 10.9 98 115-230 25-126 (354)
113 PF12458 DUF3686: ATPase invol 72.4 43 0.00094 30.1 9.4 60 209-278 320-383 (448)
114 PF13013 F-box-like_2: F-box-l 72.3 8.8 0.00019 27.4 4.4 30 17-46 21-50 (109)
115 TIGR03032 conserved hypothetic 72.3 5.3 0.00012 34.3 3.8 83 203-293 207-302 (335)
116 PF13570 PQQ_3: PQQ-like domai 70.8 9.1 0.0002 21.4 3.5 25 203-228 16-40 (40)
117 KOG1445 Tumor-specific antigen 70.8 23 0.00051 33.4 7.6 99 122-230 741-847 (1012)
118 KOG0306 WD40-repeat-containing 70.6 74 0.0016 30.9 10.9 102 110-227 381-484 (888)
119 PRK04792 tolB translocation pr 69.7 91 0.002 28.6 23.1 105 121-235 240-346 (448)
120 KOG0308 Conserved WD40 repeat- 69.5 1E+02 0.0022 29.4 11.3 28 203-230 176-204 (735)
121 PF03089 RAG2: Recombination a 69.3 68 0.0015 27.3 9.4 43 139-188 82-128 (337)
122 cd00200 WD40 WD40 domain, foun 68.9 60 0.0013 26.2 15.4 102 114-230 147-252 (289)
123 KOG0289 mRNA splicing factor [ 68.2 93 0.002 28.1 14.0 107 170-298 368-476 (506)
124 PRK00178 tolB translocation pr 68.2 94 0.002 28.2 19.7 105 121-235 265-371 (430)
125 KOG0649 WD40 repeat protein [G 68.1 70 0.0015 26.6 12.2 108 114-230 127-238 (325)
126 TIGR02658 TTQ_MADH_Hv methylam 66.9 92 0.002 27.6 11.2 116 113-231 12-140 (352)
127 KOG0278 Serine/threonine kinas 66.8 75 0.0016 26.5 12.9 62 209-279 236-297 (334)
128 smart00284 OLF Olfactomedin-li 64.9 84 0.0018 26.4 11.3 114 155-279 35-159 (255)
129 KOG0299 U3 snoRNP-associated p 63.7 1.2E+02 0.0025 27.6 14.8 28 203-230 332-359 (479)
130 KOG2445 Nuclear pore complex c 63.1 37 0.0008 29.1 6.8 40 253-295 181-220 (361)
131 KOG0289 mRNA splicing factor [ 62.1 61 0.0013 29.2 8.2 67 203-279 352-419 (506)
132 KOG2502 Tub family proteins [G 60.6 6.3 0.00014 34.1 2.0 40 16-55 43-90 (355)
133 KOG0306 WD40-repeat-containing 59.4 88 0.0019 30.4 9.2 105 113-230 34-140 (888)
134 KOG3545 Olfactomedin and relat 58.5 1.1E+02 0.0023 25.5 9.0 93 116-230 3-99 (249)
135 KOG0266 WD40 repeat-containing 58.3 1.5E+02 0.0033 27.2 13.5 96 122-231 224-322 (456)
136 PF09372 PRANC: PRANC domain; 58.3 9.8 0.00021 26.4 2.4 25 16-40 70-94 (97)
137 KOG0294 WD40 repeat-containing 58.0 1.3E+02 0.0027 26.1 12.4 98 115-229 141-239 (362)
138 cd00216 PQQ_DH Dehydrogenases 55.9 1.7E+02 0.0038 27.1 14.0 134 115-265 303-458 (488)
139 KOG0315 G-protein beta subunit 55.8 1.2E+02 0.0027 25.3 13.0 149 114-279 137-288 (311)
140 PF02191 OLF: Olfactomedin-lik 55.7 1.2E+02 0.0027 25.3 9.7 113 154-279 30-154 (250)
141 KOG0281 Beta-TrCP (transducin 55.0 1.5E+02 0.0032 26.1 9.4 93 121-230 338-431 (499)
142 TIGR02658 TTQ_MADH_Hv methylam 54.8 1.5E+02 0.0033 26.2 11.6 109 113-230 206-333 (352)
143 KOG0305 Anaphase promoting com 54.3 1.8E+02 0.004 27.0 10.5 98 118-230 192-291 (484)
144 PRK04922 tolB translocation pr 54.1 1.7E+02 0.0037 26.6 20.2 113 113-235 259-376 (433)
145 TIGR03075 PQQ_enz_alc_DH PQQ-d 53.6 2E+02 0.0043 27.1 13.6 70 152-233 67-146 (527)
146 KOG1539 WD repeat protein [Gen 52.4 2.5E+02 0.0054 27.9 11.0 64 156-230 215-278 (910)
147 PF14870 PSII_BNR: Photosynthe 51.9 1.6E+02 0.0034 25.5 11.6 186 90-303 90-283 (302)
148 cd00200 WD40 WD40 domain, foun 51.6 1.3E+02 0.0027 24.2 16.3 102 114-230 105-210 (289)
149 KOG2048 WD40 repeat protein [G 51.5 2.1E+02 0.0046 27.4 10.2 35 106-140 480-514 (691)
150 KOG4378 Nuclear protein COP1 [ 51.4 1.8E+02 0.004 26.9 9.5 96 119-230 183-283 (673)
151 PF10282 Lactonase: Lactonase, 50.8 63 0.0014 28.4 6.9 52 174-229 18-72 (345)
152 PTZ00420 coronin; Provisional 48.9 2.5E+02 0.0054 26.9 10.9 23 208-230 274-296 (568)
153 KOG0315 G-protein beta subunit 48.8 1.6E+02 0.0035 24.7 14.4 68 203-279 129-197 (311)
154 PF01436 NHL: NHL repeat; Int 48.7 37 0.0008 17.2 3.6 22 203-224 6-28 (28)
155 PTZ00334 trans-sialidase; Prov 48.3 1.2E+02 0.0026 30.0 8.6 83 203-296 265-355 (780)
156 PF01011 PQQ: PQQ enzyme repea 48.1 42 0.00091 18.4 3.5 20 210-230 2-21 (38)
157 KOG0645 WD40 repeat protein [G 47.9 1.7E+02 0.0037 24.8 10.8 97 171-279 37-135 (312)
158 smart00564 PQQ beta-propeller 47.6 39 0.00084 17.5 3.3 23 112-134 5-27 (33)
159 TIGR02276 beta_rpt_yvtn 40-res 46.9 39 0.00084 18.6 3.4 23 208-230 3-25 (42)
160 PF02239 Cytochrom_D1: Cytochr 45.9 63 0.0014 28.8 6.1 99 114-230 6-111 (369)
161 PTZ00420 coronin; Provisional 44.0 3E+02 0.0064 26.3 13.5 52 171-230 148-200 (568)
162 KOG0282 mRNA splicing factor [ 43.9 1.3E+02 0.0028 27.5 7.4 51 171-230 280-333 (503)
163 PTZ00421 coronin; Provisional 43.8 2.8E+02 0.006 26.0 15.9 59 116-182 140-201 (493)
164 PTZ00421 coronin; Provisional 42.6 2.9E+02 0.0063 25.8 14.4 62 156-230 139-201 (493)
165 KOG0772 Uncharacterized conser 42.4 2.9E+02 0.0062 25.8 9.4 81 204-291 323-406 (641)
166 PF13859 BNR_3: BNR repeat-lik 41.7 83 0.0018 27.3 5.9 132 150-296 65-218 (310)
167 PF02897 Peptidase_S9_N: Proly 41.4 2.6E+02 0.0057 25.0 12.3 110 112-232 286-409 (414)
168 KOG0286 G-protein beta subunit 41.1 2.3E+02 0.0051 24.3 11.9 55 170-230 250-306 (343)
169 PRK13684 Ycf48-like protein; P 40.9 2.5E+02 0.0054 24.6 14.6 132 114-264 143-279 (334)
170 PF14781 BBS2_N: Ciliary BBSom 40.9 67 0.0015 23.9 4.5 50 211-264 66-116 (136)
171 KOG4499 Ca2+-binding protein R 38.9 1.3E+02 0.0029 24.9 6.2 38 203-240 216-254 (310)
172 PF11768 DUF3312: Protein of u 38.8 3.4E+02 0.0074 25.6 9.9 70 155-230 219-292 (545)
173 COG3386 Gluconolactonase [Carb 38.8 2.6E+02 0.0057 24.2 10.8 58 203-265 217-277 (307)
174 PRK05137 tolB translocation pr 38.8 3E+02 0.0066 25.0 22.5 104 121-234 224-329 (435)
175 KOG0270 WD40 repeat-containing 38.4 3.1E+02 0.0067 25.0 11.3 96 117-230 259-363 (463)
176 KOG1332 Vesicle coat complex C 38.3 2.4E+02 0.0052 23.6 8.7 110 123-238 80-204 (299)
177 COG4946 Uncharacterized protei 37.7 3.4E+02 0.0073 25.2 16.6 98 82-187 288-398 (668)
178 KOG0296 Angio-associated migra 36.9 3E+02 0.0065 24.4 12.4 139 114-279 76-220 (399)
179 PF14870 PSII_BNR: Photosynthe 36.8 2.8E+02 0.0061 24.0 11.7 130 113-262 71-204 (302)
180 PF08268 FBA_3: F-box associat 35.8 1.7E+02 0.0037 21.2 7.4 74 113-186 5-87 (129)
181 KOG0283 WD40 repeat-containing 35.8 4.3E+02 0.0094 25.9 10.8 61 210-279 516-576 (712)
182 KOG0639 Transducin-like enhanc 35.8 1.8E+02 0.004 27.0 7.1 71 203-279 424-495 (705)
183 TIGR02800 propeller_TolB tol-p 35.6 3.2E+02 0.007 24.4 22.0 103 122-234 213-317 (417)
184 COG3823 Glutamine cyclotransfe 35.2 2.5E+02 0.0054 23.0 10.0 55 209-263 186-248 (262)
185 KOG0295 WD40 repeat-containing 34.6 3.3E+02 0.0072 24.2 11.8 63 207-279 302-364 (406)
186 KOG0266 WD40 repeat-containing 34.5 3.7E+02 0.008 24.7 13.7 143 117-279 261-409 (456)
187 KOG0283 WD40 repeat-containing 33.3 2.5E+02 0.0054 27.5 8.0 93 122-231 389-485 (712)
188 PF06881 Elongin_A: RNA polyme 33.3 48 0.001 23.6 2.8 37 17-53 3-47 (109)
189 KOG2394 WD40 protein DMR-N9 [G 33.1 76 0.0017 29.5 4.4 59 208-279 301-362 (636)
190 COG1520 FOG: WD40-like repeat 32.2 3.6E+02 0.0077 23.8 13.7 135 83-232 80-224 (370)
191 KOG0263 Transcription initiati 32.0 4.7E+02 0.01 25.6 9.5 62 208-279 588-649 (707)
192 PF08309 LVIVD: LVIVD repeat; 30.1 1.1E+02 0.0025 17.4 4.3 26 203-229 6-31 (42)
193 KOG3926 F-box proteins [Amino 30.0 96 0.0021 26.2 4.2 30 16-45 200-230 (332)
194 COG3823 Glutamine cyclotransfe 27.1 3.5E+02 0.0077 22.2 9.0 71 147-228 48-120 (262)
195 KOG1446 Histone H3 (Lys4) meth 27.0 4.1E+02 0.009 22.9 12.1 26 112-137 110-136 (311)
196 KOG0272 U4/U6 small nuclear ri 26.9 4.8E+02 0.01 23.7 9.7 105 153-279 313-418 (459)
197 PRK04043 tolB translocation pr 26.8 4.9E+02 0.011 23.7 20.0 140 82-235 214-365 (419)
198 PF15408 PH_7: Pleckstrin homo 26.1 67 0.0014 21.7 2.2 26 35-60 76-101 (104)
199 KOG0640 mRNA cleavage stimulat 26.1 2.3E+02 0.0049 24.6 5.8 64 208-278 227-290 (430)
200 PF13919 ASXH: Asx homology do 25.7 74 0.0016 23.9 2.7 39 17-55 43-101 (138)
201 KOG0299 U3 snoRNP-associated p 25.4 2.8E+02 0.006 25.4 6.5 27 204-230 209-235 (479)
202 PF06433 Me-amine-dh_H: Methyl 25.2 2E+02 0.0044 25.3 5.5 69 154-230 249-323 (342)
203 KOG0293 WD40 repeat-containing 25.2 5.2E+02 0.011 23.5 11.7 132 122-279 290-425 (519)
204 PF07762 DUF1618: Protein of u 25.0 2E+02 0.0043 21.0 5.0 43 250-292 47-94 (131)
205 KOG1273 WD40 repeat protein [G 25.0 1.8E+02 0.004 25.2 5.1 61 208-279 34-95 (405)
206 PF15232 DUF4585: Domain of un 24.1 87 0.0019 20.5 2.4 31 208-239 16-48 (75)
207 KOG0647 mRNA export protein (c 23.2 5E+02 0.011 22.5 10.7 27 113-139 84-110 (347)
208 PRK04922 tolB translocation pr 23.1 5.7E+02 0.012 23.2 22.0 103 122-234 227-331 (433)
209 KOG0264 Nucleosome remodeling 22.6 5.9E+02 0.013 23.2 9.5 90 208-309 284-374 (422)
210 KOG0646 WD40 repeat protein [G 22.3 6.2E+02 0.013 23.3 13.9 24 107-130 128-152 (476)
211 PF03022 MRJP: Major royal jel 22.3 2.8E+02 0.0061 23.7 6.0 64 171-235 34-105 (287)
212 cd00094 HX Hemopexin-like repe 22.0 4E+02 0.0087 21.0 12.4 103 114-230 63-178 (194)
213 TIGR03118 PEPCTERM_chp_1 conse 21.8 5E+02 0.011 22.7 7.0 73 200-279 139-230 (336)
214 KOG0318 WD40 repeat stress pro 21.4 6.9E+02 0.015 23.5 14.1 65 154-230 454-520 (603)
215 KOG1517 Guanine nucleotide bin 20.8 9.8E+02 0.021 25.1 11.6 141 116-278 1079-1238(1387)
216 TIGR03678 het_cyc_patell bacte 20.5 1.3E+02 0.0029 16.1 2.2 28 1-28 1-29 (34)
217 KOG0771 Prolactin regulatory e 20.5 6.4E+02 0.014 22.7 11.4 147 109-265 151-302 (398)
218 KOG1445 Tumor-specific antigen 20.2 4.8E+02 0.01 25.3 7.1 46 217-265 740-785 (1012)
219 PF11932 DUF3450: Protein of u 20.0 79 0.0017 26.4 2.1 27 114-140 193-219 (251)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=200.11 Aligned_cols=198 Identities=21% Similarity=0.331 Sum_probs=167.5
Q ss_pred CCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEE
Q 040781 78 PYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVV 150 (316)
Q Consensus 78 ~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~ 150 (316)
...++++.||+..++|..++ |+.. +.....+..+|.||++||. +++.+|||.|++|..+++|+.+|..+++
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv 423 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV 423 (571)
T ss_pred cccceEEEecCCCCceeccC--CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE
Confidence 45677899999999999986 7643 3344556678999999984 6899999999999999999999999999
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc-----ceEEEee
Q 040781 151 ALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS-----GITVSFD 225 (316)
Q Consensus 151 ~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~-----~~i~~yD 225 (316)
+.++++||++||.++.......++.||+.+++|+.+++|+. ++... ++++.++.||++||.. ..|.+||
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~----g~a~~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGF----GVAVLNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccc----eEEEECCEEEEECCccCCCccceEEEEc
Confidence 99999999999987766577899999999999999999988 88888 9999999999999954 3489999
Q ss_pred CCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCC
Q 040781 226 PSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGE 293 (316)
Q Consensus 226 ~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~ 293 (316)
+.+++|..+..++.+ .....++..+++||++||.........++.|..+ .++|++...
T Consensus 498 p~~~~W~~v~~m~~~-----rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~-----~d~W~~~~~ 555 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSP-----RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE-----TDTWTEVTE 555 (571)
T ss_pred CCCCceeEcccCccc-----cccccEEEECCEEEEEecccCccccceeEEcCCC-----CCceeeCCC
Confidence 999999999877766 2445667789999999998777777888888554 244999877
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=199.39 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=172.5
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC-------ceeeeecCCCCce
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAW 135 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w 135 (316)
..++.+++... .......++.||+..+.|..+. +++. .....++..+|.||++||. +++++|||.+++|
T Consensus 285 ~~l~~vGG~~~-~~~~~~~ve~yd~~~~~w~~~a--~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 285 GKLVAVGGYNR-QGQSLRSVECYDPKTNEWSSLA--PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CeEEEECCCCC-CCcccceeEEecCCcCcEeecC--CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 34555655541 1334566889999999999995 5542 3344556678999999984 5789999999999
Q ss_pred eecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781 136 HHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE 215 (316)
Q Consensus 136 ~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~ 215 (316)
..+|+|..+|..++++.+++.||++||.++.. ....+|.||+.+++|..+++|+. .+... ++++.+|.+|++|
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~--~r~~~----gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLT--RRSGH----GVAVLGGKLYIIG 434 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCc--ceeee----EEEEECCEEEEEc
Confidence 99999999999999999999999999987554 67789999999999999999988 88888 9999999999999
Q ss_pred c------ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhh
Q 040781 216 K------YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELK 289 (316)
Q Consensus 216 ~------~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~ 289 (316)
| ..+.+.+|||.+++|+.++.|+.+ . ....+...+|+||++||.........++.+... .++|+
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~---R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~-----~~~W~ 504 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTR---R--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE-----TNQWT 504 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccc---c--ccceEEEECCEEEEECCccCCCccceEEEEcCC-----CCcee
Confidence 9 335789999999999999988776 2 334467789999999998774444556666554 24499
Q ss_pred hcCCCcHHHH
Q 040781 290 EIGEMPKALL 299 (316)
Q Consensus 290 ~i~~~p~~~~ 299 (316)
.++.|+....
T Consensus 505 ~v~~m~~~rs 514 (571)
T KOG4441|consen 505 MVAPMTSPRS 514 (571)
T ss_pred EcccCccccc
Confidence 9988876644
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=5.7e-24 Score=196.11 Aligned_cols=200 Identities=12% Similarity=0.140 Sum_probs=156.0
Q ss_pred ceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC-------ceeeeecCCCCceeecCCCCCCCCCCEEEEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV 153 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~ 153 (316)
.+++||+..++|..++ +++. ......+..++.||++||. +.+++|||.+++|..+|+|+.+|..++++.+
T Consensus 273 ~v~~yd~~~~~W~~l~--~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVIS--TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECC--CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 4678999999999986 4432 2233445568999999983 4589999999999999999999999999999
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc---------------
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS--------------- 218 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--------------- 218 (316)
+++||++||..+.. ....+++||+.+++|+.++++|. ++... ++++.+|.+|++||..
T Consensus 351 ~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~--~r~~~----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 351 DDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI--ALSSY----GMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred CCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc--ccccc----cEEEECCEEEEEeCCCccccccccccccccc
Confidence 99999999975432 45679999999999999999988 77666 7888999999999843
Q ss_pred --------ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc-ceeeEEEeeccCCchhhhh
Q 040781 219 --------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV-KSLKIWQVNIKGGSLEELK 289 (316)
Q Consensus 219 --------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~-~~~~iw~l~~~~~~~~~W~ 289 (316)
+.+.+|||++++|..++.|+.+ ...+.++..+|+||++||....... ..++.+..+ +.++|+
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~----~~~~W~ 494 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTG-----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN----TYNGWE 494 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcc-----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCC----CCCCee
Confidence 3589999999999999877766 1234566789999999986532221 224444333 213499
Q ss_pred hcCCCcHHHH
Q 040781 290 EIGEMPKALL 299 (316)
Q Consensus 290 ~i~~~p~~~~ 299 (316)
.+++||....
T Consensus 495 ~~~~m~~~r~ 504 (557)
T PHA02713 495 LITTTESRLS 504 (557)
T ss_pred EccccCcccc
Confidence 9999997655
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=3.3e-23 Score=191.09 Aligned_cols=193 Identities=10% Similarity=0.121 Sum_probs=152.8
Q ss_pred CCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEE
Q 040781 80 LTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL 152 (316)
Q Consensus 80 ~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~ 152 (316)
...++.||+..+.|..++ |++. ......+..+|.||++||. +++++|||.+++|..+++++.++..++.+.
T Consensus 319 ~~~v~~Yd~~~n~W~~~~--~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~ 396 (557)
T PHA02713 319 LNKVYKINIENKIHVELP--PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV 396 (557)
T ss_pred cceEEEEECCCCeEeeCC--CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE
Confidence 456889999999999986 6542 2334555678999999984 568999999999999999999999999999
Q ss_pred ECCEEEEEcCcCCCC-----------------CCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781 153 VGDKVVVAGGACDFE-----------------DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE 215 (316)
Q Consensus 153 ~~~~v~~~gg~~~~~-----------------~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~ 215 (316)
++++||++||..... .....++.||+.+++|+.+++|+. ++..+ ++++.++.||++|
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~----~~~~~~~~IYv~G 470 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRP----GVVSHKDDIYVVC 470 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc--ccccC----cEEEECCEEEEEe
Confidence 999999999975321 124679999999999999999988 77777 8889999999999
Q ss_pred ccc------ceEEEeeCCC-CCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhh
Q 040781 216 KYS------GITVSFDPST-KGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEEL 288 (316)
Q Consensus 216 ~~~------~~i~~yD~~~-~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W 288 (316)
|.. ..+.+|||++ ++|..++.||.+ .....++..+|+||++||.... ..++.+... . ++|
T Consensus 471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-----r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~--~---~~W 537 (557)
T PHA02713 471 DIKDEKNVKTCIFRYNTNTYNGWELITTTESR-----LSALHTILHDNTIMMLHCYESY---MLQDTFNVY--T---YEW 537 (557)
T ss_pred CCCCCCccceeEEEecCCCCCCeeEccccCcc-----cccceeEEECCEEEEEeeecce---eehhhcCcc--c---ccc
Confidence 853 3578999999 899999877766 2345667789999999986542 235555444 3 449
Q ss_pred hhcCC
Q 040781 289 KEIGE 293 (316)
Q Consensus 289 ~~i~~ 293 (316)
+.+++
T Consensus 538 ~~~~~ 542 (557)
T PHA02713 538 NHICH 542 (557)
T ss_pred cchhh
Confidence 87755
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.91 E-value=8.9e-23 Score=185.61 Aligned_cols=193 Identities=15% Similarity=0.155 Sum_probs=149.3
Q ss_pred EEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC---ceeeeecCCCCceeecCCC
Q 040781 66 LLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS---KLSFSFDPLHLAWHHVDAP 141 (316)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~---~~~~v~np~t~~w~~lp~~ 141 (316)
+++.++.+ .......++.||+..++|..++ +++. +.....+..++.||++||. +.+..|||.+++|..+|++
T Consensus 274 lyviGG~~--~~~~~~~v~~Ydp~~~~W~~~~--~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWM--NNEIHNNAIAVNYISNNWIPIP--PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred EEEEcCCC--CCCcCCeEEEEECCCCEEEECC--CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 34444443 2223456788999999999996 5532 2234445578999999985 5689999999999999999
Q ss_pred CCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceE
Q 040781 142 RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGIT 221 (316)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i 221 (316)
+.+|..++.+.++++||++||.... ...++.||+.+++|+.+++++. ++..+ ++++.++.||++||. +
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~--~r~~~----~~~~~~~~IYv~GG~---~ 417 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYY--PHYKS----CALVFGRRLFLVGRN---A 417 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCC--ccccc----eEEEECCEEEEECCc---e
Confidence 9999999999999999999996432 2568999999999999999887 66666 778899999999974 5
Q ss_pred EEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 222 VSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 222 ~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.+||+++++|+.++.++.+ ...+.++..+|+||++||.........++.+..+
T Consensus 418 e~ydp~~~~W~~~~~m~~~-----r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP-----RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEecCCCCcEeEcCCCCCC-----ccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 8899999999999877665 2334566789999999996543323446555554
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=4.2e-22 Score=184.72 Aligned_cols=198 Identities=18% Similarity=0.286 Sum_probs=153.3
Q ss_pred CceEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEE
Q 040781 81 TTAHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV 153 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~ 153 (316)
..++.||+..++|..++ +++ +......+..++.||++||. +++++|||.+++|..+++++.+|..++.+..
T Consensus 311 ~~v~~yd~~~~~W~~~~--~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 388 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVP--ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV 388 (534)
T ss_pred ccEEEEeCCCCeeeECC--CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence 45788999999999886 443 33333445568999999984 5789999999999999999999999999899
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc--------ceEEEee
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS--------GITVSFD 225 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--------~~i~~yD 225 (316)
+++||++||..........+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||.. +.+++||
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SHYGG----CAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--cccCc----eEEEECCEEEEECCccCCCCCcccceEEEec
Confidence 99999999975444356789999999999999998887 66666 6788899999999842 3489999
Q ss_pred CCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 226 PSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 226 ~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
+.+++|+.++.++.+ + ....++..+|+|+++||........ .++.+| ... ++|+.+..+|.
T Consensus 463 ~~~~~W~~~~~~~~~----r-~~~~~~~~~~~iyv~GG~~~~~~~~--~v~~yd--~~~-~~W~~~~~~p~ 523 (534)
T PHA03098 463 PVTNKWTELSSLNFP----R-INASLCIFNNKIYVVGGDKYEYYIN--EIEVYD--DKT-NTWTLFCKFPK 523 (534)
T ss_pred CCCCceeeCCCCCcc----c-ccceEEEECCEEEEEcCCcCCcccc--eeEEEe--CCC-CEEEecCCCcc
Confidence 999999998876655 1 2234455699999999876543233 345555 322 34998887665
No 7
>PLN02153 epithiospecifier protein
Probab=99.88 E-value=1.6e-20 Score=164.39 Aligned_cols=221 Identities=16% Similarity=0.167 Sum_probs=151.9
Q ss_pred eEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCC--CCcc---ceeeeecCCEEEEEcCC------ceeeeecCCCC
Q 040781 65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQP--SSFD---FLLRSSHSTLLYTLSPS------KLSFSFDPLHL 133 (316)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~--~~~~---~~~~~s~~~~l~~~gg~------~~~~v~np~t~ 133 (316)
.+++++..........+.++.||+..++|..++ ++ .+.. ....+..++.||++||. +++++|||.++
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAP--ANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcC--ccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 455565542101112356889999999999885 33 1221 22334567999999983 57999999999
Q ss_pred ceeecCCC-----CCCCCCCEEEEECCEEEEEcCcCCCC-----CCCcEEEEEeCCCCCeeecCCCCc-ccccCccccce
Q 040781 134 AWHHVDAP-----RVWRTDPVVALVGDKVVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQSMPA-VLKDSAASTWL 202 (316)
Q Consensus 134 ~w~~lp~~-----~~~~~~~~~~~~~~~v~~~gg~~~~~-----~~~~~v~vy~~~t~~W~~~~~~p~-~~~~~~~~~~~ 202 (316)
+|..++++ |.+|..++++..+.+||++||..... .....+++||+++++|+.+..+.. ..++..+
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~---- 187 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA---- 187 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc----
Confidence 99999866 67888888888999999999975321 123578999999999999865431 1145555
Q ss_pred eEEEeCCEEEEEecc-------------cceEEEeeCCCCCccCCCcCC-CCCcccceeeeeeEeeCCEEEEEecCCCCC
Q 040781 203 SVAVNSRQLYVTEKY-------------SGITVSFDPSTKGWSGPFHLR-QFDHEKKVFYSVITFANDRLIAVGLTGEAE 268 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~-------------~~~i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~ 268 (316)
++++.++.+|+++|. .+.+.+||+.+++|.++.... .| ........+..+++|+++||....+
T Consensus 188 ~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P---~~r~~~~~~~~~~~iyv~GG~~~~~ 264 (341)
T PLN02153 188 GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP---SARSVFAHAVVGKYIIIFGGEVWPD 264 (341)
T ss_pred eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC---CCcceeeeEEECCEEEEECcccCCc
Confidence 677889999998763 256899999999999886432 12 1223344566789999999963221
Q ss_pred -------CcceeeEEEeeccCCchhhhhhcC-----CCcHH
Q 040781 269 -------DVKSLKIWQVNIKGGSLEELKEIG-----EMPKA 297 (316)
Q Consensus 269 -------~~~~~~iw~l~~~~~~~~~W~~i~-----~~p~~ 297 (316)
.....++|.+| ... ++|+++. ++|+.
T Consensus 265 ~~~~~~~~~~~n~v~~~d--~~~-~~W~~~~~~~~~~~pr~ 302 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALD--TET-LVWEKLGECGEPAMPRG 302 (341)
T ss_pred cccccccccccccEEEEE--cCc-cEEEeccCCCCCCCCCc
Confidence 11123788888 443 4498775 56654
No 8
>PLN02193 nitrile-specifier protein
Probab=99.86 E-value=1.3e-19 Score=164.43 Aligned_cols=219 Identities=12% Similarity=0.147 Sum_probs=152.1
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCCc---cceeeeecCCEEEEEcCC------ceeeeecCCCCc
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSF---DFLLRSSHSTLLYTLSPS------KLSFSFDPLHLA 134 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~---~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~ 134 (316)
..+++++..........+.++.||+..++|..++.....|. .....+..++.||++||. +++++|||.+++
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 34555655320011123458899999999998742001221 122334467999999983 689999999999
Q ss_pred eeecCCC---CCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEeC
Q 040781 135 WHHVDAP---RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVNS 208 (316)
Q Consensus 135 w~~lp~~---~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~~ 208 (316)
|.+++++ |.+|..++++..+.+||++||..... ....+++||+.+++|+.+.. +|. .+..+ ++++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~--~R~~~----~~~~~~ 328 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFS--IRGGA----GLEVVQ 328 (470)
T ss_pred EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCC--CCCCc----EEEEEC
Confidence 9999876 77888888888999999999975433 45679999999999998853 333 45555 677889
Q ss_pred CEEEEEeccc----ceEEEeeCCCCCccCCCcCC-CCCcccceeeeeeEeeCCEEEEEecCCCCCC-------cceeeEE
Q 040781 209 RQLYVTEKYS----GITVSFDPSTKGWSGPFHLR-QFDHEKKVFYSVITFANDRLIAVGLTGEAED-------VKSLKIW 276 (316)
Q Consensus 209 ~~~y~~~~~~----~~i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~-------~~~~~iw 276 (316)
+.+|+++|.. +.+++||+.+++|+.+..+. .| .....+..+..+++|+++||....+. ...-++|
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P---~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRP---SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCC---CCcceeEEEEECCEEEEECCccCCccccccCccceeccEE
Confidence 9999998843 57899999999999887542 12 12233445567899999998643211 1113578
Q ss_pred EeeccCCchhhhhhcCCCc
Q 040781 277 QVNIKGGSLEELKEIGEMP 295 (316)
Q Consensus 277 ~l~~~~~~~~~W~~i~~~p 295 (316)
.+| ..+ .+|+++..++
T Consensus 406 ~~D--~~t-~~W~~~~~~~ 421 (470)
T PLN02193 406 ALD--TET-LQWERLDKFG 421 (470)
T ss_pred EEE--cCc-CEEEEcccCC
Confidence 888 544 3499876554
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.86 E-value=5e-20 Score=170.94 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=148.5
Q ss_pred EEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCC-------ceeeeecCCCCceeecCCCCCCCCCCEEEEECCE
Q 040781 84 HAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDK 156 (316)
Q Consensus 84 ~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~ 156 (316)
..|++...+|..++ +.+..........++.||++||. +++++|||.+++|..+|+++.+|..++++..+++
T Consensus 267 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ 344 (534)
T PHA03098 267 ITNYSPLSEINTII--DIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNR 344 (534)
T ss_pred eecchhhhhccccc--CccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCE
Confidence 45777777887764 32212222444567999999983 4789999999999999999999999999999999
Q ss_pred EEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceEEEeeCCCCC
Q 040781 157 VVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGITVSFDPSTKG 230 (316)
Q Consensus 157 v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i~~yD~~~~~ 230 (316)
+|++||.... .....+++||+.+++|+.++++|. ++..+ ++++.++.+|++||. .+.+..||+.+++
T Consensus 345 lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~--~r~~~----~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 345 IYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIF--PRYNP----CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCc--CCccc----eEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 9999997633 255779999999999999999887 77666 778899999999983 2568999999999
Q ss_pred ccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc-ceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781 231 WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV-KSLKIWQVNIKGGSLEELKEIGEMPKA 297 (316)
Q Consensus 231 W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~-~~~~iw~l~~~~~~~~~W~~i~~~p~~ 297 (316)
|..+..+|.+ . ..+..+..+|+||++||....... ..-.+|.+| ..+ ++|+++..||..
T Consensus 418 W~~~~~~p~~----r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd--~~~-~~W~~~~~~~~~ 477 (534)
T PHA03098 418 WSKGSPLPIS----H-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN--PVT-NKWTELSSLNFP 477 (534)
T ss_pred eeecCCCCcc----c-cCceEEEECCEEEEECCccCCCCCcccceEEEec--CCC-CceeeCCCCCcc
Confidence 9998866655 1 233456679999999986543211 112367776 333 449999888753
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.85 E-value=1.6e-19 Score=156.96 Aligned_cols=193 Identities=12% Similarity=0.088 Sum_probs=137.1
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCce----eEccCCCCCCc-cceeeeecCCEEEEEcCC------ceeeeecCCC
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVW----IEIKNNQPSSF-DFLLRSSHSTLLYTLSPS------KLSFSFDPLH 132 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w----~~~~~~~~~~~-~~~~~~s~~~~l~~~gg~------~~~~v~np~t 132 (316)
..+++++..+ .......++.||+..++| ..++ +++.. .....+..++.||++||. +++++|||.+
T Consensus 73 ~~lyviGG~~--~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSN--SSERFSSVYRITLDESKEELICETIG--NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCC--CCCCceeEEEEEEcCCceeeeeeEcC--CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 4455566554 333456688899998887 5554 44322 233445567999999983 6899999999
Q ss_pred CceeecCCCC-CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc-cccCccccceeEEEeCCE
Q 040781 133 LAWHHVDAPR-VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV-LKDSAASTWLSVAVNSRQ 210 (316)
Q Consensus 133 ~~w~~lp~~~-~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~-~~~~~~~~~~~~~~~~~~ 210 (316)
++|..+++++ .+|..+.++.++.+||++||.... ....+++||+.+++|+.+.+++.. .++... ...++++.++.
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~-~~~~~~~~~~~ 225 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLL-GAASIKINESL 225 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceecc-ceeEEEECCCE
Confidence 9999998776 467777777899999999997532 234578999999999999765321 121111 01145566899
Q ss_pred EEEEeccc-------------------------------------ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEe
Q 040781 211 LYVTEKYS-------------------------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITF 253 (316)
Q Consensus 211 ~y~~~~~~-------------------------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~ 253 (316)
+|++||.. +.+++||+.+++|+.+..+|.. ......++.
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----~r~~~~~~~ 301 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF----ARCGAALLL 301 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc----ccCchheEE
Confidence 99999843 4689999999999998866533 223345678
Q ss_pred eCCEEEEEecCCCC
Q 040781 254 ANDRLIAVGLTGEA 267 (316)
Q Consensus 254 ~~g~L~v~g~~~~~ 267 (316)
.+++||++||...+
T Consensus 302 ~~~~iyv~GG~~~p 315 (323)
T TIGR03548 302 TGNNIFSINGELKP 315 (323)
T ss_pred ECCEEEEEeccccC
Confidence 89999999986543
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.85 E-value=3.4e-19 Score=156.53 Aligned_cols=205 Identities=15% Similarity=0.191 Sum_probs=142.3
Q ss_pred ceEEeeC--CCCceeEccCCCCC--CccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecC-CCCCC
Q 040781 82 TAHAYDA--RSHVWIEIKNNQPS--SFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVD-APRVW 144 (316)
Q Consensus 82 ~~~~~d~--~~~~w~~~~~~~~~--~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp-~~~~~ 144 (316)
..+.||+ ..++|..++ +++ ++.....+..++.||++||. +++++|||.+++|..++ +++..
T Consensus 30 ~~~~~d~~~~~~~W~~l~--~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~ 107 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIA--DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG 107 (346)
T ss_pred eeEEEECCCCCCCceECC--CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc
Confidence 3677885 577899986 543 23334455678999999984 35889999999999997 34455
Q ss_pred CCCCEEE-EECCEEEEEcCcCCCC---------------------------------CCCcEEEEEeCCCCCeeecCCCC
Q 040781 145 RTDPVVA-LVGDKVVVAGGACDFE---------------------------------DDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 145 ~~~~~~~-~~~~~v~~~gg~~~~~---------------------------------~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+..++.+ .++.+||++||..... .....+++||+.+++|+.+.++|
T Consensus 108 ~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p 187 (346)
T TIGR03547 108 LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP 187 (346)
T ss_pred ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence 5555444 6899999999964210 01367999999999999999887
Q ss_pred cccccCccccceeEEEeCCEEEEEeccc------ceEEEee--CCCCCccCCCcCCCCCc--ccceeeeeeEeeCCEEEE
Q 040781 191 AVLKDSAASTWLSVAVNSRQLYVTEKYS------GITVSFD--PSTKGWSGPFHLRQFDH--EKKVFYSVITFANDRLIA 260 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~------~~i~~yD--~~~~~W~~~~~l~~~~~--~~~~~~~~l~~~~g~L~v 260 (316)
. .++..+ ++++.+++||++||.. ..+..|| +++++|..+..++.+.. ......+..+..+|+||+
T Consensus 188 ~-~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv 262 (346)
T TIGR03547 188 F-LGTAGS----AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLV 262 (346)
T ss_pred C-CcCCCc----eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEE
Confidence 4 145555 7788899999999842 2344554 57779999988876511 011122335567999999
Q ss_pred EecCCCCC-----------------CcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781 261 VGLTGEAE-----------------DVKSLKIWQVNIKGGSLEELKEIGEMPKAL 298 (316)
Q Consensus 261 ~g~~~~~~-----------------~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~ 298 (316)
+||..... ....+++|..+ . ++|+.+..||...
T Consensus 263 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~---~~W~~~~~lp~~~ 312 (346)
T TIGR03547 263 AGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD--N---GKWSKVGKLPQGL 312 (346)
T ss_pred eecCCCCCchhhhhcCCccccCCCCceeEeeEEEec--C---CcccccCCCCCCc
Confidence 99864211 01246778776 4 3499999998653
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.85 E-value=5.6e-19 Score=155.15 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=129.9
Q ss_pred CCceEEeeCCCCceeEccCCCCCCccc-eeee-ecCCEEEEEcCC-----------------------------------
Q 040781 80 LTTAHAYDARSHVWIEIKNNQPSSFDF-LLRS-SHSTLLYTLSPS----------------------------------- 122 (316)
Q Consensus 80 ~~~~~~~d~~~~~w~~~~~~~~~~~~~-~~~~-s~~~~l~~~gg~----------------------------------- 122 (316)
...++.||+..++|..++. +++.... .... ..++.||++||.
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred cccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 4568899999999999852 2221111 1222 478999999984
Q ss_pred -----ceeeeecCCCCceeecCCCCC-CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEe--CCCCCeeecCCCCcccc
Q 040781 123 -----KLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYS--VDTRTWEICQSMPAVLK 194 (316)
Q Consensus 123 -----~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~--~~t~~W~~~~~~p~~~~ 194 (316)
+.+++|||.|++|..+++++. ++..++++.++++||++||..........+++|+ +.+++|..+.+||. +
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~--~ 240 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP--P 240 (346)
T ss_pred HcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC--C
Confidence 468899999999999998885 6777888889999999999754322223455565 56789999988876 3
Q ss_pred cCc--c-ccceeEEEeCCEEEEEeccc----------------------ceEEEeeCCCCCccCCCcCCCCCcccceeee
Q 040781 195 DSA--A-STWLSVAVNSRQLYVTEKYS----------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYS 249 (316)
Q Consensus 195 ~~~--~-~~~~~~~~~~~~~y~~~~~~----------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~ 249 (316)
+.. . .....+++.++.||++||.. ..+.+||+++++|+.+..+|.+ . ..+
T Consensus 241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~----~-~~~ 315 (346)
T TIGR03547 241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG----L-AYG 315 (346)
T ss_pred CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC----c-eee
Confidence 311 0 00113567899999999842 2478999999999999888766 2 334
Q ss_pred eeEeeCCEEEEEecCCC
Q 040781 250 VITFANDRLIAVGLTGE 266 (316)
Q Consensus 250 ~l~~~~g~L~v~g~~~~ 266 (316)
..+..+|+|+++||...
T Consensus 316 ~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 316 VSVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEEcCCEEEEEeccCC
Confidence 55678999999998754
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.83 E-value=1.6e-18 Score=150.72 Aligned_cols=176 Identities=12% Similarity=0.099 Sum_probs=127.0
Q ss_pred ceEEee-CCCC-ceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCce----eecCCCCCCCCCC
Q 040781 82 TAHAYD-ARSH-VWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAW----HHVDAPRVWRTDP 148 (316)
Q Consensus 82 ~~~~~d-~~~~-~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w----~~lp~~~~~~~~~ 148 (316)
.++.++ +... +|..++ +++. ......+..++.||++||. +++++||+.+++| ..++++|.++..+
T Consensus 40 ~v~~~~~~~~~~~W~~~~--~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDG--QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred eeEEEecCCCceeEEEcc--cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 345554 3322 698875 4432 2223344557899999984 6889999999987 7789999999888
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc----ceEEEe
Q 040781 149 VVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS----GITVSF 224 (316)
Q Consensus 149 ~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~~i~~y 224 (316)
+.++++++||++||..+.. ....+++||+.+++|+.++++|.. .+..+ .+++.++.+|++||.. ..+++|
T Consensus 118 ~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~----~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE-PRVQP----VCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred eEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC-CCCcc----eEEEECCEEEEEcCCCCccccceEEE
Confidence 8889999999999964332 457899999999999999887641 45555 6677899999999853 246899
Q ss_pred eCCCCCccCCCcCCCC-CcccceeeeeeEeeCCEEEEEecCC
Q 040781 225 DPSTKGWSGPFHLRQF-DHEKKVFYSVITFANDRLIAVGLTG 265 (316)
Q Consensus 225 D~~~~~W~~~~~l~~~-~~~~~~~~~~l~~~~g~L~v~g~~~ 265 (316)
|+++++|+.+..++.. ..........++..+++|+++||..
T Consensus 192 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 192 SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 9999999988765321 0001122334455689999999865
No 14
>PLN02153 epithiospecifier protein
Probab=99.83 E-value=1.6e-18 Score=151.85 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=147.0
Q ss_pred hhhHHHhhhhHHHHHHhhcc-cccc-------CCCCCeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCC-----C
Q 040781 36 IDLASACYVSRSWNRAVFSS-LRRV-------NKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQP-----S 102 (316)
Q Consensus 36 ~~l~r~r~VcK~W~~li~s~-~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~-----~ 102 (316)
.++.++-...+.|..+.... ..+. ......+++++... .....+.++.||+..++|..++ ++ +
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~p 125 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRD--EKREFSDFYSYDTVKNEWTFLT--KLDEEGGP 125 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCC--CCCccCcEEEEECCCCEEEEec--cCCCCCCC
Confidence 34555555667787654321 1010 01133456666654 3334567899999999999885 33 1
Q ss_pred -CccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecCCCC---CCCCCCEEEEECCEEEEEcCcCCC
Q 040781 103 -SFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVDAPR---VWRTDPVVALVGDKVVVAGGACDF 166 (316)
Q Consensus 103 -~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~---~~~~~~~~~~~~~~v~~~gg~~~~ 166 (316)
+......+..++.||++||. +++++|||.+++|..++++. .+|..+.+++++.++|++||....
T Consensus 126 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 205 (341)
T PLN02153 126 EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATS 205 (341)
T ss_pred CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccc
Confidence 12222334567899999984 25889999999999998654 677777888899999999975321
Q ss_pred -------CCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEeCCEEEEEeccc--------------ceEE
Q 040781 167 -------EDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVNSRQLYVTEKYS--------------GITV 222 (316)
Q Consensus 167 -------~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--------------~~i~ 222 (316)
......+++||+.+++|+.+.. +|. ++... ++++.++.+|++||.. +.++
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~ 279 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS--ARSVF----AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGY 279 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccCCCCC--Cccee----eeEEECCEEEEECcccCCccccccccccccccEE
Confidence 1124679999999999999864 454 55555 7788899999999942 3689
Q ss_pred EeeCCCCCccCCCcC---CCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781 223 SFDPSTKGWSGPFHL---RQFDHEKKVFYSVITFANDRLIAVGLTGE 266 (316)
Q Consensus 223 ~yD~~~~~W~~~~~l---~~~~~~~~~~~~~l~~~~g~L~v~g~~~~ 266 (316)
+||+++++|+.+... +.|.. .....+..+..+++|+++||...
T Consensus 280 ~~d~~~~~W~~~~~~~~~~~pr~-~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 280 ALDTETLVWEKLGECGEPAMPRG-WTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred EEEcCccEEEeccCCCCCCCCCc-cccccccccCCcceEEEEcCcCC
Confidence 999999999987632 22310 11112333444569999998754
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.82 E-value=9.3e-19 Score=159.38 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=129.4
Q ss_pred cCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 112 HSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 112 ~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
.++.||++||. +.++.|||.+++|..+++++.+|..++.+..+++||++||..+ ...++.||+.+++|..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEEE
Confidence 57899999984 4688999999999999999999998888899999999999642 2458999999999999
Q ss_pred cCCCCcccccCccccceeEEEeCCEEEEEeccc---ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEe
Q 040781 186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS---GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVG 262 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~---~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g 262 (316)
++++|. ++... ++++.+|.+|++||.. +.+..||+.+++|+.++.++.| + .....+..+|+||++|
T Consensus 346 ~~~l~~--~r~~~----~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~----r-~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 346 MPSLLK--PRCNP----AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP----H-YKSCALVFGRRLFLVG 414 (480)
T ss_pred CCCCCC--CCccc----EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc----c-ccceEEEECCEEEEEC
Confidence 999987 77666 7888999999999943 4578999999999998877766 2 2234557799999999
Q ss_pred cCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781 263 LTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA 297 (316)
Q Consensus 263 ~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~ 297 (316)
|. .+++..+ . ++|+.+++||..
T Consensus 415 G~--------~e~ydp~--~---~~W~~~~~m~~~ 436 (480)
T PHA02790 415 RN--------AEFYCES--S---NTWTLIDDPIYP 436 (480)
T ss_pred Cc--------eEEecCC--C---CcEeEcCCCCCC
Confidence 63 4555554 2 459999998864
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.80 E-value=8.1e-18 Score=149.02 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=131.7
Q ss_pred CCceEEeeCCCCceeEccCCCCCCccc--eeeee-cCCEEEEEcCC----------------------------------
Q 040781 80 LTTAHAYDARSHVWIEIKNNQPSSFDF--LLRSS-HSTLLYTLSPS---------------------------------- 122 (316)
Q Consensus 80 ~~~~~~~d~~~~~w~~~~~~~~~~~~~--~~~~s-~~~~l~~~gg~---------------------------------- 122 (316)
...+++||+..++|..++ +..+... ..... .++.||++||.
T Consensus 105 ~~~v~~YD~~~n~W~~~~--~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~ 182 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLD--TRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP 182 (376)
T ss_pred cccEEEEeCCCCEEEeCC--CCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence 456889999999999985 3222211 22222 67999999984
Q ss_pred ------ceeeeecCCCCceeecCCCCC-CCCCCEEEEECCEEEEEcCcCCCCCCCcEE--EEEeCCCCCeeecCCCCccc
Q 040781 123 ------KLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVGDKVVVAGGACDFEDDPLAV--EMYSVDTRTWEICQSMPAVL 193 (316)
Q Consensus 123 ------~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v--~vy~~~t~~W~~~~~~p~~~ 193 (316)
+.+++|||.+++|..+++++. ++..++++..+++||++||..........+ ..||+++++|+.+.++|.
T Consensus 183 ~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-- 260 (376)
T PRK14131 183 EDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP-- 260 (376)
T ss_pred hhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC--
Confidence 358999999999999998885 677778888899999999864332122222 345778999999988876
Q ss_pred ccCcc--ccc--eeEEEeCCEEEEEeccc----------------------ceEEEeeCCCCCccCCCcCCCCCccccee
Q 040781 194 KDSAA--STW--LSVAVNSRQLYVTEKYS----------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVF 247 (316)
Q Consensus 194 ~~~~~--~~~--~~~~~~~~~~y~~~~~~----------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~ 247 (316)
++... ... ..+++.++.||++||.. ..+.+||+++++|+.+..+|.+ + .
T Consensus 261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~----r-~ 335 (376)
T PRK14131 261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG----L-A 335 (376)
T ss_pred CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC----c-c
Confidence 33211 000 12466789999999842 1356899999999998877766 2 2
Q ss_pred eeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 248 YSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 248 ~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
....+..+|+||++||..... ...-+++.++
T Consensus 336 ~~~av~~~~~iyv~GG~~~~~-~~~~~v~~~~ 366 (376)
T PRK14131 336 YGVSVSWNNGVLLIGGETAGG-KAVSDVTLLS 366 (376)
T ss_pred ceEEEEeCCEEEEEcCCCCCC-cEeeeEEEEE
Confidence 345677899999999865421 2223445554
No 17
>PLN02193 nitrile-specifier protein
Probab=99.80 E-value=1.9e-17 Score=150.47 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=141.8
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCC---C-CccceeeeecCCEEEEEcCC------ceeeeecCCCC
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQP---S-SFDFLLRSSHSTLLYTLSPS------KLSFSFDPLHL 133 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~---~-~~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~ 133 (316)
..+++++..+ .....+++++||+..++|..++ ++ + ++.....+..++.||++||. +++++|||.++
T Consensus 229 ~~lYvfGG~~--~~~~~ndv~~yD~~t~~W~~l~--~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 229 STLYVFGGRD--ASRQYNGFYSFDTTTNEWKLLT--PVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CEEEEECCCC--CCCCCccEEEEECCCCEEEEcC--cCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 3456666654 3334567899999999999985 43 1 22223334467899999984 56899999999
Q ss_pred ceeecCC---CCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC---CcccccCccccceeEEEe
Q 040781 134 AWHHVDA---PRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM---PAVLKDSAASTWLSVAVN 207 (316)
Q Consensus 134 ~w~~lp~---~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~---p~~~~~~~~~~~~~~~~~ 207 (316)
+|..+++ ++.+|..+.+++++.++|++||.... ....+++||+.+++|+.+..+ |. ++..+ ++++.
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~--~R~~~----~~~~~ 376 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPS--ERSVF----ASAAV 376 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCC--Cccee----EEEEE
Confidence 9999874 45677788888899999999986533 357799999999999998654 44 55555 67788
Q ss_pred CCEEEEEeccc--------------ceEEEeeCCCCCccCCCcCCC----CCcccceeeeee--EeeCCEEEEEecCCCC
Q 040781 208 SRQLYVTEKYS--------------GITVSFDPSTKGWSGPFHLRQ----FDHEKKVFYSVI--TFANDRLIAVGLTGEA 267 (316)
Q Consensus 208 ~~~~y~~~~~~--------------~~i~~yD~~~~~W~~~~~l~~----~~~~~~~~~~~l--~~~~g~L~v~g~~~~~ 267 (316)
++.+|++||.. +.+++||+.+++|+.+..+.. |.. ........ ...++.|+++||....
T Consensus 377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~-R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSS-RGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCC-CccccceeeEEcCCceEEEEcCCCCc
Confidence 99999999942 368999999999998875541 200 11111112 2234569999987543
Q ss_pred CCcceeeEEEee
Q 040781 268 EDVKSLKIWQVN 279 (316)
Q Consensus 268 ~~~~~~~iw~l~ 279 (316)
. ..--++|.++
T Consensus 456 ~-~~~~D~~~~~ 466 (470)
T PLN02193 456 N-DRFDDLFFYG 466 (470)
T ss_pred c-ccccceEEEe
Confidence 2 2225668877
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.78 E-value=2e-17 Score=146.58 Aligned_cols=178 Identities=17% Similarity=0.229 Sum_probs=127.1
Q ss_pred eeeecCCEEEEEcCC--ceeeeecCC--CCceeecCCCC-CCCCCCEEEEECCEEEEEcCcCC-CC----CCCcEEEEEe
Q 040781 108 LRSSHSTLLYTLSPS--KLSFSFDPL--HLAWHHVDAPR-VWRTDPVVALVGDKVVVAGGACD-FE----DDPLAVEMYS 177 (316)
Q Consensus 108 ~~~s~~~~l~~~gg~--~~~~v~np~--t~~w~~lp~~~-~~~~~~~~~~~~~~v~~~gg~~~-~~----~~~~~v~vy~ 177 (316)
..+..++.||+.||. +.++++|+. +++|..+++++ .+|..++++..+.+||++||... .. .....+++||
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD 112 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD 112 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEe
Confidence 445567999998875 668888875 57999999876 47777788889999999999754 11 1346799999
Q ss_pred CCCCCeeecCC-CCcccccCccccceeEEE-eCCEEEEEeccc-------------------------------------
Q 040781 178 VDTRTWEICQS-MPAVLKDSAASTWLSVAV-NSRQLYVTEKYS------------------------------------- 218 (316)
Q Consensus 178 ~~t~~W~~~~~-~p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~------------------------------------- 218 (316)
+.+++|+.+.. .|. .+..+ ++++ .+++||++||..
T Consensus 113 ~~~n~W~~~~~~~p~--~~~~~----~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 113 PKTNSWQKLDTRSPV--GLAGH----VAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred CCCCEEEeCCCCCCC--cccce----EEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 99999999864 333 33333 3333 799999999842
Q ss_pred --ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 219 --GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 219 --~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
+.+++||+.+++|..+..+|.+ ......++..+++||++||..... ....++|.++.+... .+|.++..||.
T Consensus 187 ~~~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~-~~W~~~~~~p~ 260 (376)
T PRK14131 187 FNKEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQGKFTGNN-LKWQKLPDLPP 260 (376)
T ss_pred cCceEEEEECCCCeeeECCcCCCC----CCCcceEEEECCEEEEEeeeECCC-cCChhheEEEecCCC-cceeecCCCCC
Confidence 4689999999999998877653 223345567799999999854322 223455554411333 34999999986
Q ss_pred H
Q 040781 297 A 297 (316)
Q Consensus 297 ~ 297 (316)
.
T Consensus 261 ~ 261 (376)
T PRK14131 261 A 261 (376)
T ss_pred C
Confidence 4
No 19
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.74 E-value=8.6e-17 Score=133.04 Aligned_cols=172 Identities=15% Similarity=0.211 Sum_probs=110.3
Q ss_pred ecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC-----EEEE----ECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 111 SHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP-----VVAL----VGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 111 s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~-----~~~~----~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
+++|+||+..+ ..++||||+|++|+.||+++.++... +++. ..|||+.+....... ....++||+++++
T Consensus 3 sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~ 80 (230)
T TIGR01640 3 PCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSN 80 (230)
T ss_pred ccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCC
Confidence 35688887765 68999999999999998665432111 1111 136888776432111 3467999999999
Q ss_pred CeeecCCCCcccccCccccceeEEEeCCEEEEEecc----cc-eEEEeeCCCCCccC-CCcCCCCCcccceeeeeeEeeC
Q 040781 182 TWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY----SG-ITVSFDPSTKGWSG-PFHLRQFDHEKKVFYSVITFAN 255 (316)
Q Consensus 182 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~----~~-~i~~yD~~~~~W~~-~~~l~~~~~~~~~~~~~l~~~~ 255 (316)
+|+.+...+........ ++ +.+|.+|++... .. .|++||+++++|++ ++ +|.... .......|+..+
T Consensus 81 ~Wr~~~~~~~~~~~~~~----~v-~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~-~~~~~~~L~~~~ 153 (230)
T TIGR01640 81 SWRTIECSPPHHPLKSR----GV-CINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNS-DSVDYLSLINYK 153 (230)
T ss_pred CccccccCCCCccccCC----eE-EECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCcccc-ccccceEEEEEC
Confidence 99998643321111111 44 456666665432 11 69999999999995 44 443311 111234678889
Q ss_pred CEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 256 DRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 256 g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
|+|+++...... ..++||.|+ +++.++|++...+|.
T Consensus 154 G~L~~v~~~~~~---~~~~IWvl~--d~~~~~W~k~~~i~~ 189 (230)
T TIGR01640 154 GKLAVLKQKKDT---NNFDLWVLN--DAGKQEWSKLFTVPI 189 (230)
T ss_pred CEEEEEEecCCC---CcEEEEEEC--CCCCCceeEEEEEcC
Confidence 999999864321 239999998 665556998777764
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.70 E-value=4.8e-16 Score=123.92 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=142.8
Q ss_pred CceEEeeCCCCceeEccCCCCC---------Cccceeeeec-----CCEEEEEcCC-------ceeeeecCCCCceeecC
Q 040781 81 TTAHAYDARSHVWIEIKNNQPS---------SFDFLLRSSH-----STLLYTLSPS-------KLSFSFDPLHLAWHHVD 139 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~~~~~~~~---------~~~~~~~~s~-----~~~l~~~gg~-------~~~~v~np~t~~w~~lp 139 (316)
.+++.+|...-+|..++ |-+ +..+..+..| .+.+|+.||. +.++.|||.|++|++..
T Consensus 44 iDVH~lNa~~~RWtk~p--p~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMP--PGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred ceeEEeeccceeEEecC--cccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccc
Confidence 45777888888999986 421 1112222222 3888999983 67999999999998753
Q ss_pred ---CCCCCCCCCEEEEECCEEEEEcCcCCC-CCCCcEEEEEeCCCCCeeecCC--CCcccccCccccceeEEEeCCEEEE
Q 040781 140 ---APRVWRTDPVVALVGDKVVVAGGACDF-EDDPLAVEMYSVDTRTWEICQS--MPAVLKDSAASTWLSVAVNSRQLYV 213 (316)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~v~~~gg~~~~-~~~~~~v~vy~~~t~~W~~~~~--~p~~~~~~~~~~~~~~~~~~~~~y~ 213 (316)
-.|..|..+..++.+...|++||+.+. ......++++|..|.+|+.+.. .|.. -+..+ +..+.++.+|+
T Consensus 122 v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Ppr-wRDFH----~a~~~~~~MYi 196 (392)
T KOG4693|consen 122 VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPR-WRDFH----TASVIDGMMYI 196 (392)
T ss_pred eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCch-hhhhh----hhhhccceEEE
Confidence 467788899999999999999997543 2456789999999999999943 3332 23333 55667899999
Q ss_pred Eec--------------ccceEEEeeCCCCCccCCCcCCC-CCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEe
Q 040781 214 TEK--------------YSGITVSFDPSTKGWSGPFHLRQ-FDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQV 278 (316)
Q Consensus 214 ~~~--------------~~~~i~~yD~~~~~W~~~~~l~~-~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l 278 (316)
+|| +.+.|+++|+.++.|...+.-+. | .....+....++|++|++||+...-+.---++|.+
T Consensus 197 FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P---~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~F 273 (392)
T KOG4693|consen 197 FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP---GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCF 273 (392)
T ss_pred eccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC---CcccccceEEEcceEEEecccchhhhhhhcceeec
Confidence 998 23579999999999987654221 3 23344566678999999998765444444788999
Q ss_pred eccCCchhhhhhcCC
Q 040781 279 NIKGGSLEELKEIGE 293 (316)
Q Consensus 279 ~~~~~~~~~W~~i~~ 293 (316)
| ..+ ..|..|..
T Consensus 274 d--P~t-~~W~~I~~ 285 (392)
T KOG4693|consen 274 D--PKT-SMWSVISV 285 (392)
T ss_pred c--ccc-chheeeec
Confidence 8 544 44976643
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.64 E-value=3e-14 Score=129.42 Aligned_cols=202 Identities=17% Similarity=0.158 Sum_probs=147.5
Q ss_pred ceEEeeCCCCceeEccCCC-CC-CccceeeeecCCEEEEEcCCc-------eeeeecCCCCceeecC---CCCCCCCCCE
Q 040781 82 TAHAYDARSHVWIEIKNNQ-PS-SFDFLLRSSHSTLLYTLSPSK-------LSFSFDPLHLAWHHVD---APRVWRTDPV 149 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~-~~-~~~~~~~~s~~~~l~~~gg~~-------~~~v~np~t~~w~~lp---~~~~~~~~~~ 149 (316)
+++.+|.....|.....-- .+ +......+..+..||++||.. .++.||+.|++|..+. .+|.+|..|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 3788999988887653201 11 111223333458999999864 8999999999999875 4678899999
Q ss_pred EEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC---CCCcccccCccccceeEEEeCCEEEEEecc------cce
Q 040781 150 VALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGI 220 (316)
Q Consensus 150 ~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~ 220 (316)
++.++.++|++||.....+....+++||.++.+|.++. ..|. ++..+ ++++.++.+|+++|. .+.
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~--pR~gH----~~~~~~~~~~v~gG~~~~~~~l~D 242 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS--PRYGH----AMVVVGNKLLVFGGGDDGDVYLND 242 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC--CCCCc----eEEEECCeEEEEeccccCCceecc
Confidence 99999999999998766556788999999999999983 3444 77888 889999999999873 357
Q ss_pred EEEeeCCCCCccCCCcCC-CCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCc
Q 040781 221 TVSFDPSTKGWSGPFHLR-QFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMP 295 (316)
Q Consensus 221 i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p 295 (316)
++.+|+.+.+|..+.... .| ...+.+.++..+.+++++|+........--++|.|+ .. ...|.++...+
T Consensus 243 ~~~ldl~~~~W~~~~~~g~~p---~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~--~~-~~~w~~~~~~~ 312 (482)
T KOG0379|consen 243 VHILDLSTWEWKLLPTGGDLP---SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLD--LE-TLVWSKVESVG 312 (482)
T ss_pred eEeeecccceeeeccccCCCC---CCcceeeeEEECCEEEEEcCCccccccccccccccc--cc-ccceeeeeccc
Confidence 899999999998554322 12 234555666889999999987664221225668887 33 23498776655
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.62 E-value=1.7e-14 Score=115.14 Aligned_cols=191 Identities=15% Similarity=0.191 Sum_probs=132.4
Q ss_pred EEEEecCCCCCCCCCCceEEeeCCCCceeEccCCC-CCCccce-eeeecCCEEEEEcC--------CceeeeecCCCCce
Q 040781 66 LLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQ-PSSFDFL-LRSSHSTLLYTLSP--------SKLSFSFDPLHLAW 135 (316)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~-~~~~~~~-~~~s~~~~l~~~gg--------~~~~~v~np~t~~w 135 (316)
.++.+.++- .....+.+++|||..++|.+..... .++..+. ..+.-|+.+|++|| +.+++++|..|-+|
T Consensus 91 ~yvWGGRND-~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtW 169 (392)
T KOG4693|consen 91 AYVWGGRND-DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTW 169 (392)
T ss_pred EEEEcCccC-cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceee
Confidence 344455441 1223455788999999998653201 1222222 33445788999998 37899999999999
Q ss_pred eecC---CCCCCCCCCEEEEECCEEEEEcCcCCCC--------CCCcEEEEEeCCCCCeeecCC---CCcccccCccccc
Q 040781 136 HHVD---APRVWRTDPVVALVGDKVVVAGGACDFE--------DDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTW 201 (316)
Q Consensus 136 ~~lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~--------~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~ 201 (316)
+.+- .++..|..++..+++...|++||..+.. .++..+..+|.+|+.|.+... .|. .+..+
T Consensus 170 r~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~--GRRSH--- 244 (392)
T KOG4693|consen 170 REMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG--GRRSH--- 244 (392)
T ss_pred eehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC--ccccc---
Confidence 9875 5677888888888999999999875421 466788899999999998733 233 44445
Q ss_pred eeEEEeCCEEEEEecc-------cceEEEeeCCCCCccCCCc-CCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781 202 LSVAVNSRQLYVTEKY-------SGITVSFDPSTKGWSGPFH-LRQFDHEKKVFYSVITFANDRLIAVGLTGE 266 (316)
Q Consensus 202 ~~~~~~~~~~y~~~~~-------~~~i~~yD~~~~~W~~~~~-l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~ 266 (316)
+..+-++.+|++||+ .+.++.|||.+..|+.+.. -..| ..+...|. +..+++++++||+..
T Consensus 245 -S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P--~aRRRqC~-~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 245 -STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYP--SARRRQCS-VVSGGKVYLFGGTSP 313 (392)
T ss_pred -ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCC--CcccceeE-EEECCEEEEecCCCC
Confidence 556689999999993 3578999999999998762 1122 01222233 346999999999753
No 23
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.53 E-value=1.2e-12 Score=112.61 Aligned_cols=267 Identities=11% Similarity=0.087 Sum_probs=139.1
Q ss_pred CCCCCCCcHHHHHHHHhcCC-hhhhHHHhhhhHHHHHHhhcccccc-CCCCCeEEEEecCCCCCCCCCCceEEeeCCC--
Q 040781 15 NTNNSIVHGDILEAILSQVP-LIDLASACYVSRSWNRAVFSSLRRV-NKIKPWLLLHTQSQRTMAPYLTTAHAYDARS-- 90 (316)
Q Consensus 15 ~~~~~~Lp~dll~~IL~rLp-~~~l~r~r~VcK~W~~li~s~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~-- 90 (316)
|++|++||+|||..|..||| ..|++|||+|||+||+.+....... ...+||+++..-.. ..+ . ...|+..
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~-~~~--~---~~~~~~~~~ 74 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINP-SET--L---TDDRSYISR 74 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccC-CCC--c---ccccccccc
Confidence 57899999999999999996 6899999999999999987532111 11225655421000 010 0 0111100
Q ss_pred -C------ceeEccCCCCCCccceeeeecCCEEEEEcCC---ceeeeecCCCCceeecCCCCC----CC---CCCEEEE-
Q 040781 91 -H------VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS---KLSFSFDPLHLAWHHVDAPRV----WR---TDPVVAL- 152 (316)
Q Consensus 91 -~------~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~---~~~~v~np~t~~w~~lp~~~~----~~---~~~~~~~- 152 (316)
+ ...++ + ...++..|+|...+.. +.+.+.||.++.-...++... .+ ...+..+
T Consensus 75 ~~~~ls~~~~~r~---~------~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 75 PGAFLSRAAFFRV---T------LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ccceeeeeEEEEe---e------cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 0 11111 1 0111223665555432 678888888887444432110 00 0000000
Q ss_pred ---------ECC-EEEEEcCcCCCCC-CCcEEEEEeC------CCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781 153 ---------VGD-KVVVAGGACDFED-DPLAVEMYSV------DTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE 215 (316)
Q Consensus 153 ---------~~~-~v~~~gg~~~~~~-~~~~v~vy~~------~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~ 215 (316)
.++ ++.++. .....+ ....+.++.. ..++|+.+..... ... .+++.+|.+|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~----~~~----DIi~~kGkfYAvD 216 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVK-VKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY----HFS----DIIVHKGQTYALD 216 (373)
T ss_pred ecccccccccceeEEEEEE-eecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc----eee----EEEEECCEEEEEc
Confidence 001 011111 000000 0011111111 1367888753211 122 7888999999996
Q ss_pred cccceEEEeeCCCCCccCCCcCCC--CCcccceeeeeeEeeCCEEEEEecCCCC------------CCcceeeEEEeecc
Q 040781 216 KYSGITVSFDPSTKGWSGPFHLRQ--FDHEKKVFYSVITFANDRLIAVGLTGEA------------EDVKSLKIWQVNIK 281 (316)
Q Consensus 216 ~~~~~i~~yD~~~~~W~~~~~l~~--~~~~~~~~~~~l~~~~g~L~v~g~~~~~------------~~~~~~~iw~l~~~ 281 (316)
. .+.++++|.+-+. .++..... +..........+++++|+|++|...... .....++||++|
T Consensus 217 ~-~G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD-- 292 (373)
T PLN03215 217 S-IGIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD-- 292 (373)
T ss_pred C-CCeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc--
Confidence 4 3677888854221 22221111 0000111235688999999999864211 123469999999
Q ss_pred CCchhhhhhcCCCcHHHHHHHhcCCcceeee
Q 040781 282 GGSLEELKEIGEMPKALLEKLKGNKRSAVEV 312 (316)
Q Consensus 282 ~~~~~~W~~i~~~p~~~~~~~~~~~~~~~~~ 312 (316)
... .+|+++..+.+..+ |.|.+++....
T Consensus 293 ~~~-~~WveV~sLgd~aL--FlG~~~s~sv~ 320 (373)
T PLN03215 293 DEL-AKWMEVKTLGDNAF--VMATDTCFSVL 320 (373)
T ss_pred CCC-CcEEEecccCCeEE--EEECCccEEEe
Confidence 544 34999999988855 77766655443
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.45 E-value=4.4e-12 Score=115.33 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=126.2
Q ss_pred cCCEEEEEcCC------c--eeeeecCCCCceeecC---CCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781 112 HSTLLYTLSPS------K--LSFSFDPLHLAWHHVD---APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT 180 (316)
Q Consensus 112 ~~~~l~~~gg~------~--~~~v~np~t~~w~~lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t 180 (316)
.++.+|++||. . +++++|..+..|.... ..|.++..+.++..+.++|++||..........++.||..|
T Consensus 69 ~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t 148 (482)
T KOG0379|consen 69 IGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST 148 (482)
T ss_pred ECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCC
Confidence 47899999873 3 4999999999998764 34578888888899999999999876544677899999999
Q ss_pred CCeeecCC---CCcccccCccccceeEEEeCCEEEEEec------ccceEEEeeCCCCCccCCCcCC-CCCcccceeeee
Q 040781 181 RTWEICQS---MPAVLKDSAASTWLSVAVNSRQLYVTEK------YSGITVSFDPSTKGWSGPFHLR-QFDHEKKVFYSV 250 (316)
Q Consensus 181 ~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~ 250 (316)
++|+.... .|. ++..+ ++++.+.++|++|| ..+.+++||+++.+|.++.... .| .....+.
T Consensus 149 ~~W~~l~~~~~~P~--~r~~H----s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P---~pR~gH~ 219 (482)
T KOG0379|consen 149 RTWSLLSPTGDPPP--PRAGH----SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP---SPRYGHA 219 (482)
T ss_pred CcEEEecCcCCCCC--Ccccc----eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC---CCCCCce
Confidence 99999843 344 67777 88899999999998 2467999999999999887532 23 2345567
Q ss_pred eEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhc
Q 040781 251 ITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEI 291 (316)
Q Consensus 251 l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i 291 (316)
++..++++++++|.... ...--++|.|| -.+ .+|.++
T Consensus 220 ~~~~~~~~~v~gG~~~~-~~~l~D~~~ld--l~~-~~W~~~ 256 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGDDG-DVYLNDVHILD--LST-WEWKLL 256 (482)
T ss_pred EEEECCeEEEEeccccC-CceecceEeee--ccc-ceeeec
Confidence 78889999999875521 12224567777 434 338744
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.35 E-value=3.5e-11 Score=101.91 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=111.6
Q ss_pred ceeeeecCCCCceeec--CCCCCCCCCCEEEEE-CCEEEEEcCcCCCC-----CCCcEEEEEeCCCCCeeecCC--CCcc
Q 040781 123 KLSFSFDPLHLAWHHV--DAPRVWRTDPVVALV-GDKVVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQS--MPAV 192 (316)
Q Consensus 123 ~~~~v~np~t~~w~~l--p~~~~~~~~~~~~~~-~~~v~~~gg~~~~~-----~~~~~v~vy~~~t~~W~~~~~--~p~~ 192 (316)
+++|+||..+++|+.+ |..|.+|..+.++++ ...++++||..... .....+++||..+++|..+.. -|.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS- 176 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS- 176 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC-
Confidence 7899999999999987 566777877766555 37899999853211 234568999999999999953 445
Q ss_pred cccCccccceeEEEeCCEEEEEec---------ccceEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEe
Q 040781 193 LKDSAASTWLSVAVNSRQLYVTEK---------YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVG 262 (316)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~y~~~~---------~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g 262 (316)
+++++ -.++-...+.++|| +.|.+++||+++-+|+.+.. +..-. ...+.|.+ +.-.|.++|.|
T Consensus 177 -~RSGH----RMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~P-tpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 177 -PRSGH----RMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGP-TPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred -CCccc----eeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCC-CCCCcceEEecCCCcEEEEc
Confidence 77776 45556788888888 34689999999999998874 32101 22333444 44489999999
Q ss_pred cCCCCC-------CcceeeEEEeeccCC--chhhhhhcCC
Q 040781 263 LTGEAE-------DVKSLKIWQVNIKGG--SLEELKEIGE 293 (316)
Q Consensus 263 ~~~~~~-------~~~~~~iw~l~~~~~--~~~~W~~i~~ 293 (316)
|+.... ....-++|.|+-+++ ...+|+++.+
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 875321 223367899983221 1233666644
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=99.08 Aligned_cols=176 Identities=15% Similarity=0.213 Sum_probs=123.4
Q ss_pred CceEEeeCCCCceeEccCCCC--CCccc-eeeeecCCEEEEEcC------------CceeeeecCCCCceeecC--CCCC
Q 040781 81 TTAHAYDARSHVWIEIKNNQP--SSFDF-LLRSSHSTLLYTLSP------------SKLSFSFDPLHLAWHHVD--APRV 143 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~~~~~~~--~~~~~-~~~~s~~~~l~~~gg------------~~~~~v~np~t~~w~~lp--~~~~ 143 (316)
+.++.||...++|..+.. |. +|+.. ..++...|.++++|| .+++++++..|++|.+|. ..|.
T Consensus 98 ndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 557789999999998743 32 22322 233333479999998 178999999999999875 5778
Q ss_pred CCCCCEEEEECCEEEEEcCcCCCC---CCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEe-CCEEEEEec
Q 040781 144 WRTDPVVALVGDKVVVAGGACDFE---DDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVN-SRQLYVTEK 216 (316)
Q Consensus 144 ~~~~~~~~~~~~~v~~~gg~~~~~---~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~-~~~~y~~~~ 216 (316)
+|..|.+++...+++++||+.+.. .+...+++||..|=+|..+.+ .|. ++++. ...+. .|.||+.||
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt--pRSGc----q~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT--PRSGC----QFSVTPQGGIVVYGG 250 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC--CCCcc----eEEecCCCcEEEEcc
Confidence 899999999999999999985432 466789999999999999954 233 55544 33444 789999998
Q ss_pred c--------------cceEEEeeCCC-----CCccCCCc--CCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781 217 Y--------------SGITVSFDPST-----KGWSGPFH--LRQFDHEKKVFYSVITFANDRLIAVGLTGE 266 (316)
Q Consensus 217 ~--------------~~~i~~yD~~~-----~~W~~~~~--l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~ 266 (316)
+ ...++.+++++ =.|..+.. ++|- .+..+...+.-+++-+++||.-+
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs---pRsgfsv~va~n~kal~FGGV~D 318 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS---PRSGFSVAVAKNHKALFFGGVCD 318 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC---CCCceeEEEecCCceEEecceec
Confidence 2 23567888877 34666554 3332 23334444556777777776433
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.17 E-value=8.8e-10 Score=92.16 Aligned_cols=199 Identities=16% Similarity=0.208 Sum_probs=129.1
Q ss_pred CCceeEccCCCCCCccceeeeecCCEEEEEcCC-----------ceeeeecCCCCceeecCCC-CCCCCCCEEEEECC-E
Q 040781 90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS-----------KLSFSFDPLHLAWHHVDAP-RVWRTDPVVALVGD-K 156 (316)
Q Consensus 90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~-----------~~~~v~np~t~~w~~lp~~-~~~~~~~~~~~~~~-~ 156 (316)
...|..+...|..++.....+..++.||+.||. ++.|.|||.+++|.++... |.--..+..+.++. +
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~ 148 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTK 148 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCce
Confidence 458998853233333334445567999998862 6889999999999999632 22222333444555 9
Q ss_pred EEEEcCcCCCC---------------------------------CCCcEEEEEeCCCCCeeecCCCCcccccCcccccee
Q 040781 157 VVVAGGACDFE---------------------------------DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLS 203 (316)
Q Consensus 157 v~~~gg~~~~~---------------------------------~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~ 203 (316)
|+++||+.... .....+.+|++.++.|+.....|. .+.+.+ +
T Consensus 149 i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf-~~~aGs----a 223 (381)
T COG3055 149 IYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF-YGNAGS----A 223 (381)
T ss_pred EEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc-cCccCc----c
Confidence 99999984110 133467899999999999976665 355555 5
Q ss_pred EEEeCCEEEEEec------ccceEEEeeC--CCCCccCCCcCCCCCcc--cceeeeeeEeeCCEEEEEecCCCCC-----
Q 040781 204 VAVNSRQLYVTEK------YSGITVSFDP--STKGWSGPFHLRQFDHE--KKVFYSVITFANDRLIAVGLTGEAE----- 268 (316)
Q Consensus 204 ~~~~~~~~y~~~~------~~~~i~~yD~--~~~~W~~~~~l~~~~~~--~~~~~~~l~~~~g~L~v~g~~~~~~----- 268 (316)
++.-++.+.++.| ++..+..+|+ ...+|..+..+|+|... ..+..+.-...+|.+.+.|+.....
T Consensus 224 ~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y 303 (381)
T COG3055 224 VVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAY 303 (381)
T ss_pred eeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHH
Confidence 5556777777766 2333445554 56789999988887221 2333333446688888988864321
Q ss_pred ------------CcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781 269 ------------DVKSLKIWQVNIKGGSLEELKEIGEMPKAL 298 (316)
Q Consensus 269 ------------~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~ 298 (316)
....-+||.++ +.. |+.++.||..+
T Consensus 304 ~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~---Wk~~GeLp~~l 340 (381)
T COG3055 304 KNGKFYAHEGLSKSWNSEVYIFD--NGS---WKIVGELPQGL 340 (381)
T ss_pred HhcccccccchhhhhhceEEEEc--CCc---eeeecccCCCc
Confidence 12235778888 533 99999999754
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.05 E-value=2.1e-09 Score=93.72 Aligned_cols=210 Identities=14% Similarity=0.183 Sum_probs=129.7
Q ss_pred CCeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCC-CCCCcc-ceeeeecCCEEEEEcCC-------ceeeeecCCCC
Q 040781 63 KPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNN-QPSSFD-FLLRSSHSTLLYTLSPS-------KLSFSFDPLHL 133 (316)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~-~~~~~~-~~~~~s~~~~l~~~gg~-------~~~~v~np~t~ 133 (316)
.-.+++|+..+ +. -...++.||...++|.....- ..++.. -+-..+.|..||++||- +++|-.....-
T Consensus 42 kELiviFGGGN--EG-iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 42 KELIVIFGGGN--EG-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRW 118 (830)
T ss_pred eeeEEEecCCc--cc-chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhh
Confidence 34556676655 21 233478899999999743110 111111 11223456888999883 45555545555
Q ss_pred ceeecC-------CCCCCCCCCEEEEECCEEEEEcCcCCCC--------CCCcEEEEEeCCCC----Ceeec---CCCCc
Q 040781 134 AWHHVD-------APRVWRTDPVVALVGDKVVVAGGACDFE--------DDPLAVEMYSVDTR----TWEIC---QSMPA 191 (316)
Q Consensus 134 ~w~~lp-------~~~~~~~~~~~~~~~~~v~~~gg~~~~~--------~~~~~v~vy~~~t~----~W~~~---~~~p~ 191 (316)
+|+++. ++|.+|..|.+.+++.|.|++||..+.. .++..+.+.+...+ .|... ..+|.
T Consensus 119 eWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~ 198 (830)
T KOG4152|consen 119 EWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPP 198 (830)
T ss_pred hHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCC
Confidence 788873 5778899999999999999999974332 34566667666644 48876 23555
Q ss_pred ccccCccccceeEEEe-----CCEEEEEec----ccceEEEeeCCCCCccCCCc---CCCCCcccceeeeeeEeeCCEEE
Q 040781 192 VLKDSAASTWLSVAVN-----SRQLYVTEK----YSGITVSFDPSTKGWSGPFH---LRQFDHEKKVFYSVITFANDRLI 259 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-----~~~~y~~~~----~~~~i~~yD~~~~~W~~~~~---l~~~~~~~~~~~~~l~~~~g~L~ 259 (316)
++..+. ++... ..++|++|| +.++++-+|+++-+|.+... .|.| .+-+.....++++|
T Consensus 199 --pRESHT---AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlP-----RSLHsa~~IGnKMy 268 (830)
T KOG4152|consen 199 --PRESHT---AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLP-----RSLHSATTIGNKMY 268 (830)
T ss_pred --Ccccce---eEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCC-----cccccceeecceeE
Confidence 444331 22221 246899988 45688999999999987652 1223 22234445689999
Q ss_pred EEecCC----CC--------C--CcceeeEEEeeccCCchhhhhh
Q 040781 260 AVGLTG----EA--------E--DVKSLKIWQVNIKGGSLEELKE 290 (316)
Q Consensus 260 v~g~~~----~~--------~--~~~~~~iw~l~~~~~~~~~W~~ 290 (316)
++||-- +. + ....+..|.+| +.. |+.
T Consensus 269 vfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--t~~---W~t 308 (830)
T KOG4152|consen 269 VFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--TMA---WET 308 (830)
T ss_pred Eecceeeeeccccccccccceeeeccceeeeeec--chh---eee
Confidence 999732 11 0 22457888888 533 853
No 29
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.02 E-value=3.1e-10 Score=68.56 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
|..||+|++.+||++||..|+.++..|||+|++++.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999999999999999999999999765
No 30
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.91 E-value=1.4e-08 Score=88.65 Aligned_cols=170 Identities=12% Similarity=0.244 Sum_probs=103.5
Q ss_pred CEEEEEcCC-----ceeeeecCCCCceeecC---CCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC--CCe
Q 040781 114 TLLYTLSPS-----KLSFSFDPLHLAWHHVD---APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT--RTW 183 (316)
Q Consensus 114 ~~l~~~gg~-----~~~~v~np~t~~w~~lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t--~~W 183 (316)
.++.++||. +.+++||.+|++|..-. ..|.....+++...+.+|+++||...++.+.. +.|.... ..|
T Consensus 43 ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsN--dLYELQasRWeW 120 (830)
T KOG4152|consen 43 ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSN--DLYELQASRWEW 120 (830)
T ss_pred eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccc--hHHHhhhhhhhH
Confidence 677777752 68999999999997421 34445555666667899999999876654443 3455444 467
Q ss_pred eecCC-CC----cccccCccccceeEEEeCCEEEEEec--------------ccceEEEeeCCCC----CccCC---CcC
Q 040781 184 EICQS-MP----AVLKDSAASTWLSVAVNSRQLYVTEK--------------YSGITVSFDPSTK----GWSGP---FHL 237 (316)
Q Consensus 184 ~~~~~-~p----~~~~~~~~~~~~~~~~~~~~~y~~~~--------------~~~~i~~yD~~~~----~W~~~---~~l 237 (316)
+++.+ .| .+.++-.+ +..+.+++-|++|| +.++++..++.-+ .|... ..+
T Consensus 121 krlkp~~p~nG~pPCPRlGH----SFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~ 196 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGH----SFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVL 196 (830)
T ss_pred hhcCCCCCCCCCCCCCccCc----eeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCC
Confidence 77733 11 11255556 67788999999998 2234455555433 25432 214
Q ss_pred CCCCcccceeeeeeEe-----eCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh-----cCCCcHHHH
Q 040781 238 RQFDHEKKVFYSVITF-----ANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE-----IGEMPKALL 299 (316)
Q Consensus 238 ~~~~~~~~~~~~~l~~-----~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~-----i~~~p~~~~ 299 (316)
|+| +-++.+++. ...+++++||-.. ++--++|.|| -+++. |.+ +.+||+.|.
T Consensus 197 P~p----RESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ld--l~Tl~-W~kp~~~G~~PlPRSLH 258 (830)
T KOG4152|consen 197 PPP----RESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLD--LDTLT-WNKPSLSGVAPLPRSLH 258 (830)
T ss_pred CCC----cccceeEEEEeccCCcceEEEEccccc---ccccceeEEe--cceee-cccccccCCCCCCcccc
Confidence 444 222233332 1347888886432 2335789999 55555 865 456887664
No 31
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.89 E-value=5.5e-08 Score=81.61 Aligned_cols=176 Identities=18% Similarity=0.290 Sum_probs=114.5
Q ss_pred ecCCEEEE-EcC-CceeeeecCC--CCceeecCC-CCCCCCCCEEEEECCEEEEEcCcCCCC----CCCcEEEEEeCCCC
Q 040781 111 SHSTLLYT-LSP-SKLSFSFDPL--HLAWHHVDA-PRVWRTDPVVALVGDKVVVAGGACDFE----DDPLAVEMYSVDTR 181 (316)
Q Consensus 111 s~~~~l~~-~gg-~~~~~v~np~--t~~w~~lp~-~~~~~~~~~~~~~~~~v~~~gg~~~~~----~~~~~v~vy~~~t~ 181 (316)
-.|..+|+ .|. -...|+.|.. .+.|+++.. +..+|.....++.+.++|++||..... .....+..||+.+|
T Consensus 44 ~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n 123 (381)
T COG3055 44 LIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN 123 (381)
T ss_pred eecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC
Confidence 34566776 441 2567777654 468999875 445666667777899999999874432 24467889999999
Q ss_pred CeeecCC-CCcccccCccccceeEEEeCC-EEEEEec---------------------------------------ccce
Q 040781 182 TWEICQS-MPAVLKDSAASTWLSVAVNSR-QLYVTEK---------------------------------------YSGI 220 (316)
Q Consensus 182 ~W~~~~~-~p~~~~~~~~~~~~~~~~~~~-~~y~~~~---------------------------------------~~~~ 220 (316)
+|..++. .|. ....+ .++..++ .+|++|| ....
T Consensus 124 sW~kl~t~sP~--gl~G~----~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~e 197 (381)
T COG3055 124 SWHKLDTRSPT--GLVGA----STFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197 (381)
T ss_pred hhheecccccc--ccccc----eeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccc
Confidence 9999954 455 33333 3444444 8999887 1346
Q ss_pred EEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781 221 TVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKAL 298 (316)
Q Consensus 221 i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~ 298 (316)
+++||+.+++|+.....|.- .....+.+..+++|.++.|...+. .+.-++++.++.....+ |..+..+|...
T Consensus 198 v~sy~p~~n~W~~~G~~pf~----~~aGsa~~~~~n~~~lInGEiKpG-LRt~~~k~~~~~~~~~~-w~~l~~lp~~~ 269 (381)
T COG3055 198 VLSYDPSTNQWRNLGENPFY----GNAGSAVVIKGNKLTLINGEIKPG-LRTAEVKQADFGGDNLK-WLKLSDLPAPI 269 (381)
T ss_pred ccccccccchhhhcCcCccc----CccCcceeecCCeEEEEcceecCC-ccccceeEEEeccCcee-eeeccCCCCCC
Confidence 89999999999998866653 122234556678899998754432 12233344442254444 99887766543
No 32
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.77 E-value=1.9e-09 Score=65.47 Aligned_cols=39 Identities=33% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 17 NNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 17 ~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
++..||+|++.+||.+|+..++++++.|||+|++++.+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 356799999999999999999999999999999999875
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.75 E-value=4.6e-08 Score=59.84 Aligned_cols=48 Identities=33% Similarity=0.434 Sum_probs=41.6
Q ss_pred CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 144 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
+|..++++.++++||++||..........+++||++|++|+.+++||.
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 466778888999999999987744477889999999999999998876
No 34
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.75 E-value=1.1e-08 Score=59.75 Aligned_cols=35 Identities=40% Similarity=0.547 Sum_probs=33.4
Q ss_pred CcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 21 VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 21 Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
||+|++.+||.+|+..++.++++|||+|+.++.++
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999999999999999999999999765
No 35
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.54 E-value=2.1e-07 Score=69.53 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred eEEEeCCEEEEEec---ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 203 SVAVNSRQLYVTEK---YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 203 ~~~~~~~~~y~~~~---~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
|++++|..+|.... ....|++||+++|+|+.+. +|.. .........|++.+|+|+++....... ...++||.|+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~-~P~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIK-LPED-PYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEE-eeee-eccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 34555555555543 3468999999999998777 6511 112334567889999999997544322 3569999999
Q ss_pred ccCCchhhhhhcCC-CcHHHHH
Q 040781 280 IKGGSLEELKEIGE-MPKALLE 300 (316)
Q Consensus 280 ~~~~~~~~W~~i~~-~p~~~~~ 300 (316)
+...++|.+... +|.....
T Consensus 78 --D~~k~~Wsk~~~~lp~~~~~ 97 (129)
T PF08268_consen 78 --DYEKQEWSKKHIVLPPSWQH 97 (129)
T ss_pred --ccccceEEEEEEECChHHhc
Confidence 776667986644 5555443
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.51 E-value=1e-07 Score=57.47 Aligned_cols=47 Identities=34% Similarity=0.534 Sum_probs=40.0
Q ss_pred CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 144 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+|..++++.++.+||++||..........+++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 46677888999999999998775557889999999999999988765
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.32 E-value=2.7e-06 Score=51.65 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCCCCEEEEECCEEEEEcCc--CCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 144 WRTDPVVALVGDKVVVAGGA--CDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 144 ~~~~~~~~~~~~~v~~~gg~--~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+|..++.++.+.+||++||. .........+++||+++++|+.+.++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 46677888899999999998 333356788999999999999987663
No 38
>PF13964 Kelch_6: Kelch motif
Probab=98.29 E-value=2e-06 Score=52.54 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=32.4
Q ss_pred eeeecCCEEEEEcCC-------ceeeeecCCCCceeecCCCCCCC
Q 040781 108 LRSSHSTLLYTLSPS-------KLSFSFDPLHLAWHHVDAPRVWR 145 (316)
Q Consensus 108 ~~~s~~~~l~~~gg~-------~~~~v~np~t~~w~~lp~~~~~~ 145 (316)
..+..++.||++||. +++++|||.|++|.++++|+.+|
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 345577899999983 67999999999999999999875
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.19 E-value=0.00014 Score=61.17 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=35.6
Q ss_pred CCCCc----HHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVH----GDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp----~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
+..|| +++.+.||+.|...+|..+..|||+|+.+++.+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc
Confidence 34688 999999999999999999999999999999987
No 40
>smart00612 Kelch Kelch domain.
Probab=98.08 E-value=9.8e-06 Score=48.51 Aligned_cols=46 Identities=35% Similarity=0.454 Sum_probs=35.2
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNS 208 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (316)
+||++||.... .....+++||+.+++|+.++++|. .+..+ ++++.+
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~----~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGH----GVAVIN 46 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccc----eEEEeC
Confidence 48999987542 356789999999999999999887 66655 555544
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.07 E-value=4.9e-06 Score=50.52 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 144 WRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 144 ~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+|..++.+.. +.++|++||..........+++||..+++|+++.++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4667777777 5899999998765446778999999999999997765
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.1e-06 Score=69.31 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 5 AAAPEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 5 ~~~~~~~~~~~~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
++.++..++. .|.+||||+++.||+.|+.++|++...|||+|+.+.++.
T Consensus 87 ~~~~~~npgv--~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 87 KLNRENNPGV--SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred chhcccCCCC--CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 3444555554 399999999999999999999999999999999999876
No 43
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.99 E-value=0.00025 Score=62.09 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=84.4
Q ss_pred cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCC----CcEEEEE--e--------
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDD----PLAVEMY--S-------- 177 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~----~~~v~vy--~-------- 177 (316)
++..|++++......+||+.|..-..+|.+..+...+....+++++|++......... ...+|++ +
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~ 154 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSP 154 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccC
Confidence 5778888877778999999999999999888888777777789999999854322111 0145544 4
Q ss_pred CCCCCeeecCCCCcccccCc-cccceeEEEe-CCEEEE-EecccceEEEeeCCCCCccCCCc--CCCC
Q 040781 178 VDTRTWEICQSMPAVLKDSA-ASTWLSVAVN-SRQLYV-TEKYSGITVSFDPSTKGWSGPFH--LRQF 240 (316)
Q Consensus 178 ~~t~~W~~~~~~p~~~~~~~-~~~~~~~~~~-~~~~y~-~~~~~~~i~~yD~~~~~W~~~~~--l~~~ 240 (316)
..+.+|+.+++.|....... .....+.+++ |..||+ +.+.....++||..+.+|+.+.. ||..
T Consensus 155 ~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF~ 222 (342)
T PF07893_consen 155 EESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPFH 222 (342)
T ss_pred CCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecCcC
Confidence 23346787765443111110 0002356666 777888 33321235999999999999876 5553
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.96 E-value=8.3e-06 Score=48.97 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=31.1
Q ss_pred eEEEeCCEEEEEecc------cceEEEeeCCCCCccCCCcCC
Q 040781 203 SVAVNSRQLYVTEKY------SGITVSFDPSTKGWSGPFHLR 238 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~------~~~i~~yD~~~~~W~~~~~l~ 238 (316)
++++.++.+|++||. .+.+..||+.+++|+.++.||
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 788999999999993 347899999999999887654
No 45
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.82 E-value=7.2e-05 Score=45.27 Aligned_cols=43 Identities=30% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCEEEEEcCcCC-CCCCCcEEEEEeCCCCCeeecCCCCcccccCcc
Q 040781 154 GDKVVVAGGACD-FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA 198 (316)
Q Consensus 154 ~~~v~~~gg~~~-~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~ 198 (316)
++++|++||... .......+.+||+.+++|+++..+|. ++..+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h 44 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGH 44 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--Cccce
Confidence 468999999872 33467889999999999999987877 77665
No 46
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.81 E-value=5.4e-05 Score=45.84 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCEEEEEcCC--------ceeeeecCCCCceeecCCCCCCCCCCEEEE
Q 040781 113 STLLYTLSPS--------KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL 152 (316)
Q Consensus 113 ~~~l~~~gg~--------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~ 152 (316)
|+.+|++||. +++++||+.+++|++++.+|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 3567888873 689999999999999999999998887754
No 47
>smart00612 Kelch Kelch domain.
Probab=97.76 E-value=7.3e-05 Score=44.60 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=32.7
Q ss_pred EEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEEC
Q 040781 116 LYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVG 154 (316)
Q Consensus 116 l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~ 154 (316)
||++||. +++++|||.+++|..+++++.+|..++.+.++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 6788763 57899999999999999999999888776654
No 48
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=97.70 E-value=0.00012 Score=57.00 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=49.2
Q ss_pred EEEeCCEEEEEecccc----eEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEecCCCCCCcceeeEEEe
Q 040781 204 VAVNSRQLYVTEKYSG----ITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVGLTGEAEDVKSLKIWQV 278 (316)
Q Consensus 204 ~~~~~~~~y~~~~~~~----~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g~~~~~~~~~~~~iw~l 278 (316)
+.++|..+|+...... .|++||+++++|+....+|.... .......| +..+++|+++..... ...++||.|
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~~L~~v~~~~L~~~~~~~~---~~~~~IWvm 77 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND-DDDDSVSLSVVRGDCLCVLYQCDE---TSKIEIWVM 77 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC-ccCCEEEEEEecCCEEEEEEeccC---CccEEEEEE
Confidence 3444444444443222 69999999999843332554411 11223445 344789999964221 234999999
Q ss_pred eccCCc--hhhhhhcCCCc
Q 040781 279 NIKGGS--LEELKEIGEMP 295 (316)
Q Consensus 279 ~~~~~~--~~~W~~i~~~p 295 (316)
+ +.+ .+.|+++-.++
T Consensus 78 ~--~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 78 K--KYGYGKESWTKLFTID 94 (164)
T ss_pred e--eeccCcceEEEEEEEe
Confidence 9 532 33498776544
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.62 E-value=0.00015 Score=43.91 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=30.0
Q ss_pred eEEEeCCEEEEEecc--------cceEEEeeCCCCCccCCCcC
Q 040781 203 SVAVNSRQLYVTEKY--------SGITVSFDPSTKGWSGPFHL 237 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~--------~~~i~~yD~~~~~W~~~~~l 237 (316)
++++.++++|++||. .+.+.+||+++++|+++..+
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 678889999999996 24689999999999988744
No 50
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.54 E-value=0.00018 Score=63.50 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=82.7
Q ss_pred cCCCCceeecCCCC----------CCCCCCEEEEEC--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCccc
Q 040781 129 DPLHLAWHHVDAPR----------VWRTDPVVALVG--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVL 193 (316)
Q Consensus 129 np~t~~w~~lp~~~----------~~~~~~~~~~~~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~ 193 (316)
-|.+-.|.++++-. ..|..|.++... ..||+.||.++.. ....+++|+...+.|..+.. .|-
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG-- 311 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPG-- 311 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCc--
Confidence 45667888886433 344556665544 4899999987765 66778999999999999843 333
Q ss_pred ccCccccceeEEEe--CCEEEEEecc-----------cceEEEeeCCCCCccCCCcCCCC-Cc-ccceeeeeeEeeCCE-
Q 040781 194 KDSAASTWLSVAVN--SRQLYVTEKY-----------SGITVSFDPSTKGWSGPFHLRQF-DH-EKKVFYSVITFANDR- 257 (316)
Q Consensus 194 ~~~~~~~~~~~~~~--~~~~y~~~~~-----------~~~i~~yD~~~~~W~~~~~l~~~-~~-~~~~~~~~l~~~~g~- 257 (316)
.+..+ -.+.+ ..++|++|.+ ...++.||.+++.|..+. +... +. -...+.+.+...+++
T Consensus 312 ~RsCH----RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 312 ARSCH----RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred chhhh----hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEec-ccccccCCcceeecceeeEecCcc
Confidence 33322 12223 2368887751 236899999999998665 2211 11 133444555555555
Q ss_pred -EEEEecCCC
Q 040781 258 -LIAVGLTGE 266 (316)
Q Consensus 258 -L~v~g~~~~ 266 (316)
|||+||+..
T Consensus 387 ~iyVfGGr~~ 396 (723)
T KOG2437|consen 387 MIYVFGGRIL 396 (723)
T ss_pred eEEEecCeec
Confidence 999998753
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.46 E-value=0.00021 Score=43.22 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=22.7
Q ss_pred eEEEe-CCEEEEEecc------cceEEEeeCCCCCccCCCcCC
Q 040781 203 SVAVN-SRQLYVTEKY------SGITVSFDPSTKGWSGPFHLR 238 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~------~~~i~~yD~~~~~W~~~~~l~ 238 (316)
+++.. ++.+|++||. .+.++.||+.+++|++++.+|
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 44444 6899999983 246899999999999987555
No 52
>PLN02772 guanylate kinase
Probab=97.29 E-value=0.0034 Score=55.17 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=58.4
Q ss_pred CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC---CCCcccccCccccceeEEEeCCEEEEEec---c
Q 040781 144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVNSRQLYVTEK---Y 217 (316)
Q Consensus 144 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~~y~~~~---~ 217 (316)
++..+....+++++|++||..+.......+++||..|++|.... ..|. ++..+ .++.+.+++++++++ .
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~--~r~Gh---Sa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK--PCKGY---SAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC--CCCcc---eEEEECCceEEEEeCCCCC
Confidence 45556777889999999997765446778999999999998863 3444 44444 155566899999975 3
Q ss_pred cceEEEeeCCCC
Q 040781 218 SGITVSFDPSTK 229 (316)
Q Consensus 218 ~~~i~~yD~~~~ 229 (316)
...|+.+.+.|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 346777776654
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.00 E-value=0.017 Score=47.71 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=82.3
Q ss_pred EeeCCCCceeEccCCCCCCccceeeeec----CCEEEEEcCC----ceeeeecCCC----CceeecC-CCCCCCCCCEEE
Q 040781 85 AYDARSHVWIEIKNNQPSSFDFLLRSSH----STLLYTLSPS----KLSFSFDPLH----LAWHHVD-APRVWRTDPVVA 151 (316)
Q Consensus 85 ~~d~~~~~w~~~~~~~~~~~~~~~~~s~----~~~l~~~gg~----~~~~v~np~t----~~w~~lp-~~~~~~~~~~~~ 151 (316)
.||+..++++.+.. .. +.-++++ .|.+...||. +.+..|+|.+ ..|.+.+ .|...|-.+...
T Consensus 50 ~yD~~tn~~rpl~v-~t----d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 50 EYDPNTNTFRPLTV-QT----DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEecCCCcEEeccC-CC----CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 39999999987743 22 2222222 2666777763 5677888876 6798887 477777776655
Q ss_pred EE-CCEEEEEcCcCCCCCCCcEEEEEeCCCC-----CeeecCCCCccc-ccCccccceeEEEeCCEEEEEecccceEEEe
Q 040781 152 LV-GDKVVVAGGACDFEDDPLAVEMYSVDTR-----TWEICQSMPAVL-KDSAASTWLSVAVNSRQLYVTEKYSGITVSF 224 (316)
Q Consensus 152 ~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~-----~W~~~~~~p~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~y 224 (316)
.+ +++|+++||... ...|.+..... .|..+....... ..-.+ + ....-+|.+++.+.... ..|
T Consensus 125 ~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~-~~llPdG~lFi~an~~s--~i~ 194 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--F-VHLLPDGNLFIFANRGS--IIY 194 (243)
T ss_pred ECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCc--e-EEEcCCCCEEEEEcCCc--EEE
Confidence 44 689999999753 23555554321 222222111000 01111 1 22234788888886533 577
Q ss_pred eCCCCCc-cCCCcCCCC
Q 040781 225 DPSTKGW-SGPFHLRQF 240 (316)
Q Consensus 225 D~~~~~W-~~~~~l~~~ 240 (316)
|..++++ +.++.+|..
T Consensus 195 d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 195 DYKTNTVVRTLPDLPGG 211 (243)
T ss_pred eCCCCeEEeeCCCCCCC
Confidence 9998876 566666543
No 54
>PF13854 Kelch_5: Kelch motif
Probab=96.94 E-value=0.0035 Score=36.38 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEEECCEEEEEcCcCC-CCCCCcEEEEEeCCC
Q 040781 141 PRVWRTDPVVALVGDKVVVAGGACD-FEDDPLAVEMYSVDT 180 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~gg~~~-~~~~~~~v~vy~~~t 180 (316)
+|.+|..++.+.++.++|++||... .......+.+||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 3667888999999999999999874 444667788888765
No 55
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.77 E-value=0.023 Score=46.88 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=86.5
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC----CCeeecC-CCCccccc-
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT----RTWEICQ-SMPAVLKD- 195 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t----~~W~~~~-~~p~~~~~- 195 (316)
...-.+|||.|++++.+....-.-+..+...-+++++..||..+ ....+.+|++.+ ..|.+.. .|.. .|
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~--~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQS--GRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccC--CCc
Confidence 35678899999999988533222222223234689999998654 235577888765 6788774 4544 33
Q ss_pred CccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCC----Ccccceeee-eeEeeCCEEEEEecCCCCCCc
Q 040781 196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF----DHEKKVFYS-VITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 196 ~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~----~~~~~~~~~-~l~~~~g~L~v~g~~~~~~~~ 270 (316)
+.. ...+-+|.+.++||..+..+.|-+....-.....++.. +......+. ..+.-+|+|++++...
T Consensus 120 YpT----~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~----- 190 (243)
T PF07250_consen 120 YPT----ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG----- 190 (243)
T ss_pred ccc----ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-----
Confidence 333 44556899999999655444554442210111111111 001111222 2235589999998532
Q ss_pred ceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781 271 KSLKIWQVNIKGGSLEELKEIGEMPKA 297 (316)
Q Consensus 271 ~~~~iw~l~~~~~~~~~W~~i~~~p~~ 297 (316)
-.|+..+ ..+..+++..||..
T Consensus 191 --s~i~d~~----~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 --SIIYDYK----TNTVVRTLPDLPGG 211 (243)
T ss_pred --cEEEeCC----CCeEEeeCCCCCCC
Confidence 2234433 22323677778876
No 56
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=96.31 E-value=0.007 Score=53.87 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=101.6
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCCccceeeeecC-------CEEEEEcC------------Cce
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHS-------TLLYTLSP------------SKL 124 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~-------~~l~~~gg------------~~~ 124 (316)
..+++|++-+ +...+.+.+.|+-..+.|..+.. .. ..+..+++|. .+||++|. ..+
T Consensus 273 ~CiYLYGGWd--G~~~l~DFW~Y~v~e~~W~~iN~-~t--~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsD 347 (723)
T KOG2437|consen 273 ECVYLYGGWD--GTQDLADFWAYSVKENQWTCINR-DT--EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSD 347 (723)
T ss_pred cEEEEecCcc--cchhHHHHHhhcCCcceeEEeec-CC--CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccc
Confidence 4677777777 44466777889999999998842 21 2234444443 46777663 378
Q ss_pred eeeecCCCCceeecCC------CCCCCCCCEEEEECCE--EEEEcCcCCCC--CCCcEEEEEeCCCCCeeecC-CCCccc
Q 040781 125 SFSFDPLHLAWHHVDA------PRVWRTDPVVALVGDK--VVVAGGACDFE--DDPLAVEMYSVDTRTWEICQ-SMPAVL 193 (316)
Q Consensus 125 ~~v~np~t~~w~~lp~------~~~~~~~~~~~~~~~~--v~~~gg~~~~~--~~~~~v~vy~~~t~~W~~~~-~~p~~~ 193 (316)
+++||-.|+.|.-+.- -|..-.+|.+++.+.+ |||+||..-.. .....+..||.....|+... +.....
T Consensus 348 fW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~ 427 (723)
T KOG2437|consen 348 FWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAG 427 (723)
T ss_pred eEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcC
Confidence 9999999999998741 2223346677777777 99999864332 24566899999999998872 211100
Q ss_pred cc-----CccccceeEEEeCCEEEEEecccc-----eEEEeeCCCCC
Q 040781 194 KD-----SAASTWLSVAVNSRQLYVTEKYSG-----ITVSFDPSTKG 230 (316)
Q Consensus 194 ~~-----~~~~~~~~~~~~~~~~y~~~~~~~-----~i~~yD~~~~~ 230 (316)
+. ..-...+-.+.++..+|+.||... ..++||+..+.
T Consensus 428 ~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~ 474 (723)
T KOG2437|consen 428 PVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEH 474 (723)
T ss_pred cchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecccc
Confidence 10 000011234457889999998432 23566665544
No 57
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.22 E-value=0.38 Score=44.84 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
+..||.++...||..|+.++++.++.||+.|+.++...
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc
Confidence 67899999999999999999999999999999999876
No 58
>PLN02772 guanylate kinase
Probab=96.16 E-value=0.043 Score=48.42 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=51.3
Q ss_pred eEEEeCCEEEEEec------ccceEEEeeCCCCCccCCCcC--CCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceee
Q 040781 203 SVAVNSRQLYVTEK------YSGITVSFDPSTKGWSGPFHL--RQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLK 274 (316)
Q Consensus 203 ~~~~~~~~~y~~~~------~~~~i~~yD~~~~~W~~~~~l--~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~ 274 (316)
+++..++++|++|| ..+.+.+||..+.+|.....+ +|+ .+..+.+.+..+++|++++....++ =.
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~---~r~GhSa~v~~~~rilv~~~~~~~~----~~ 101 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK---PCKGYSAVVLNKDRILVIKKGSAPD----DS 101 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC---CCCcceEEEECCceEEEEeCCCCCc----cc
Confidence 56778999999997 234789999999999875532 222 2334455666789999998765543 44
Q ss_pred EEEeeccC
Q 040781 275 IWQVNIKG 282 (316)
Q Consensus 275 iw~l~~~~ 282 (316)
||-|+++.
T Consensus 102 ~w~l~~~t 109 (398)
T PLN02772 102 IWFLEVDT 109 (398)
T ss_pred eEEEEcCC
Confidence 68887543
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.99 E-value=0.71 Score=37.93 Aligned_cols=177 Identities=7% Similarity=0.019 Sum_probs=91.0
Q ss_pred eEEeeCCCCceeEccCCCCCCc-ccee-eeecC-------CEEEEEcC------CceeeeecCCCCceeecCCCCCCC-C
Q 040781 83 AHAYDARSHVWIEIKNNQPSSF-DFLL-RSSHS-------TLLYTLSP------SKLSFSFDPLHLAWHHVDAPRVWR-T 146 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~-~~~~-~~s~~-------~~l~~~gg------~~~~~v~np~t~~w~~lp~~~~~~-~ 146 (316)
....||.+++|..+|. |..+. .... ....| =++..+.. ...+.||+..|+.|+.+.+.+... .
T Consensus 16 ~~V~NP~T~~~~~LP~-~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~ 94 (230)
T TIGR01640 16 LVVWNPSTGQSRWLPT-PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPL 94 (230)
T ss_pred EEEECCCCCCEEecCC-CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCccc
Confidence 6678999999999863 22110 0000 00011 12222211 246789999999999986322111 1
Q ss_pred CCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc--c--eEE
Q 040781 147 DPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS--G--ITV 222 (316)
Q Consensus 147 ~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~--~i~ 222 (316)
....+.+++.+|-+...... .....+-.||..+.+|+...++|. ..........+...+|.+.++.... . .|+
T Consensus 95 ~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~--~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW 171 (230)
T TIGR01640 95 KSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPC--GNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLW 171 (230)
T ss_pred cCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCc--cccccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence 11133467777766522111 111268889999999995223333 1111111124566678888876421 1 455
Q ss_pred Eee-CCCCCccCCCcCCCC--CcccceeeeeeEeeCCEEEEEec
Q 040781 223 SFD-PSTKGWSGPFHLRQF--DHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 223 ~yD-~~~~~W~~~~~l~~~--~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
+.+ -++++|.+.-.++.+ ..........-+..+|++++...
T Consensus 172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 554 446679876555532 11111111222355788888875
No 60
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.23 E-value=0.47 Score=39.51 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=67.3
Q ss_pred CEEEEEcC-CceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
|.++...- .+-+...||.++.=..+|++........-.. -..++.+-- .....++.||+.+.+|.+-. +|
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt------wg~g~l~rfdPs~~sW~eyp-LP 272 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT------WGTGSLHRFDPSVTSWIEYP-LP 272 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEec------cCCceeeEeCcccccceeee-CC
Confidence 55554421 1456677999987777764443222211111 123333331 12345889999999998763 22
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF 240 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~ 240 (316)
...++..+ ..|+ .+.+|+-+-..+.|..||+++.+|.+++ ++.+
T Consensus 273 gs~arpys-----~rVD~~grVW~sea~agai~rfdpeta~ftv~p-~pr~ 317 (353)
T COG4257 273 GSKARPYS-----MRVDRHGRVWLSEADAGAIGRFDPETARFTVLP-IPRP 317 (353)
T ss_pred CCCCCcce-----eeeccCCcEEeeccccCceeecCcccceEEEec-CCCC
Confidence 21233332 3333 5788887777788999999999988877 5544
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.16 E-value=1.9 Score=38.63 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=65.4
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eee-cCCCC-------CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHH-VDAPR-------VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~-lp~~~-------~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
.++.+|+.+..+.++.+|..|++ |+. ++... ........+..+++||+... ...+..+|.+|+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG 140 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDG 140 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCC
Confidence 57899998877789999998875 653 32200 01112234456788887542 234778888766
Q ss_pred --CeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccC
Q 040781 182 --TWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSG 233 (316)
Q Consensus 182 --~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~ 233 (316)
.|+.-.. . . ... +..+.++.+|+..+ .+.+.++|+.+++ |+.
T Consensus 141 ~~~W~~~~~--~--~-~~s----sP~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 141 EVAWQTKVA--G--E-ALS----RPVVSDGLVLVHTS-NGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCcccccCC--C--c-eec----CCEEECCEEEEECC-CCEEEEEEccCCCEeeee
Confidence 5876422 1 1 112 34556888888654 4578999998775 764
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.07 E-value=0.93 Score=38.48 Aligned_cols=108 Identities=12% Similarity=0.228 Sum_probs=63.3
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC-CCcccccCccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS-MPAVLKDSAAS 199 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~-~p~~~~~~~~~ 199 (316)
|..++.||+.+++|..+..- ..-.-..+... +.++++.|-..........+..||..+.+|..+.. .....+....
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~- 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT- 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE-
Confidence 57899999999999977432 11111122223 56788777432222245678999999999988854 2111122111
Q ss_pred cceeEEE---eCCEEEEEecc---cceEEEeeCCCCCccCCCc
Q 040781 200 TWLSVAV---NSRQLYVTEKY---SGITVSFDPSTKGWSGPFH 236 (316)
Q Consensus 200 ~~~~~~~---~~~~~y~~~~~---~~~i~~yD~~~~~W~~~~~ 236 (316)
...+ +...+|+.|.. ...|..|| ..+|..+..
T Consensus 93 ---a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ---ALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred ---EEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 2222 34567776651 23577785 458887774
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.07 E-value=1.6 Score=35.79 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=86.0
Q ss_pred ceEEeeCCCC--ceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--ee-ecCCCCC--CCCCCEEEEEC
Q 040781 82 TAHAYDARSH--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WH-HVDAPRV--WRTDPVVALVG 154 (316)
Q Consensus 82 ~~~~~d~~~~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~-~lp~~~~--~~~~~~~~~~~ 154 (316)
.+.++|...+ .|..-. +-.. .......++.+|+....+.++.+|..|++ |+ .....+. ..........+
T Consensus 47 ~l~~~d~~tG~~~W~~~~--~~~~--~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 122 (238)
T PF13360_consen 47 NLYALDAKTGKVLWRFDL--PGPI--SGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG 122 (238)
T ss_dssp EEEEEETTTSEEEEEEEC--SSCG--GSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET
T ss_pred EEEEEECCCCCEEEEeec--cccc--cceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec
Confidence 3778998665 455431 2111 11224467787877655689999988875 76 3322111 22333455557
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccC--ccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDS--AASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..+++... ...+..+|..+++ |+.-...+...... .......+.+.++.+|+...... +..+|..+++
T Consensus 123 ~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~ 194 (238)
T PF13360_consen 123 DRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGE 194 (238)
T ss_dssp TEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTE
T ss_pred CEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCC
Confidence 77777652 2558889988774 87754332210100 00001144555678888876543 5677999987
Q ss_pred --ccCCCcCCCCCcccceeeeeeEeeCCEEEEEe
Q 040781 231 --WSGPFHLRQFDHEKKVFYSVITFANDRLIAVG 262 (316)
Q Consensus 231 --W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g 262 (316)
|+.. +.. ........++.|++..
T Consensus 195 ~~w~~~--~~~-------~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 195 KLWSKP--ISG-------IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp EEEEEC--SS--------ECECEECCCTEEEEEE
T ss_pred EEEEec--CCC-------ccCCceeeCCEEEEEe
Confidence 6322 111 1112334567777766
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.02 E-value=2.3 Score=37.41 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=58.9
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCC-----c------eeee--ecC------CC--CceeecCCC
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS-----K------LSFS--FDP------LH--LAWHHVDAP 141 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~-----~------~~~v--~np------~t--~~w~~lp~~ 141 (316)
...||+....-...|.+..+...+ +..+.|+.||++... . .+.+ |++ .. -.|+.||+|
T Consensus 88 t~vyDt~t~av~~~P~l~~pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHSPKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred eEEEECCCCeEeccCCCCCCCcce-EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 557999888777665211112223 333457779987642 1 4444 442 12 258889887
Q ss_pred CCCCCCC-------EEEEE-CCEEEE-EcCcCCCCCCCcEEEEEeCCCCCeeecCC--CCc
Q 040781 142 RVWRTDP-------VVALV-GDKVVV-AGGACDFEDDPLAVEMYSVDTRTWEICQS--MPA 191 (316)
Q Consensus 142 ~~~~~~~-------~~~~~-~~~v~~-~gg~~~~~~~~~~v~vy~~~t~~W~~~~~--~p~ 191 (316)
|...... +.+++ +..|++ +.+. ......||..+.+|+.... ||.
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~------~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGR------RWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCC------ceEEEEEEcCCcceeeccceecCc
Confidence 7555431 33445 555665 2221 1347889999999999953 655
No 65
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.91 E-value=0.018 Score=48.45 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHhcCC-----hhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVHGDILEAILSQVP-----LIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp-----~~~l~r~r~VcK~W~~li~s~ 55 (316)
+..||+|||..||.++= +.+|-++.+|||.|+-..+.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 46799999999999874 699999999999999999887
No 66
>PF13854 Kelch_5: Kelch motif
Probab=94.77 E-value=0.1 Score=30.06 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=23.6
Q ss_pred ccCccccceeEEEeCCEEEEEeccc-------ceEEEeeCCC
Q 040781 194 KDSAASTWLSVAVNSRQLYVTEKYS-------GITVSFDPST 228 (316)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~y~~~~~~-------~~i~~yD~~~ 228 (316)
++..+ ++++.++.+|++||.. +.++.||+.+
T Consensus 4 ~R~~h----s~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 4 PRYGH----SAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred Cccce----EEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 56666 7788899999999954 3577787764
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.21 E-value=2.3 Score=38.16 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=72.9
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQ 187 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~ 187 (316)
.++.+|+.+..+.++++|+.+++ |+.- .... ...+..+++||+... ...+..+|..+++ |+.-.
T Consensus 255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 255 VGGVVYALAYNGNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQ-------NDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred ECCEEEEEEcCCeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcC-------CCeEEEEECCCCcEEEcccc
Confidence 35788887766789999999986 6541 1111 123446788888752 2347778887764 86422
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
.. . .... +.++.++.+|+... .+.+.++|..+++ |+. . +... . .....+..+|+|++...
T Consensus 323 ~~-~---~~~~----sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~~~~-~-~~~~----~-~~s~P~~~~~~l~v~t~ 384 (394)
T PRK11138 323 LL-H---RLLT----APVLYNGYLVVGDS-EGYLHWINREDGRFVAQQ-K-VDSS----G-FLSEPVVADDKLLIQAR 384 (394)
T ss_pred cC-C---Cccc----CCEEECCEEEEEeC-CCEEEEEECCCCCEEEEE-E-cCCC----c-ceeCCEEECCEEEEEeC
Confidence 11 1 1112 44567899988764 4678899998876 322 1 1111 1 11223345778877764
No 68
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.18 E-value=2.4 Score=37.74 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=72.5
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC--CeeecC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR--TWEICQ 187 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~~~ 187 (316)
.++.+|+.+..+.++++|+.|++ |..- .. . ....+..+.+||+... ...+..+|..++ .|+.-.
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~-~--~~~p~~~~~~vyv~~~-------~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS-S--YQGPAVDDNRLYVTDA-------DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeec--cC-C--ccCceEeCCEEEEECC-------CCeEEEEECCCCcEEEcccc
Confidence 46788887766789999999875 5331 11 1 1123346788887642 234777888776 476521
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLT 264 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~ 264 (316)
+.. .... +.++.++.+|+.+ ..+.+.++|..+++-. ..++.+ ........+..+++|++.+..
T Consensus 308 -~~~---~~~s----sp~i~g~~l~~~~-~~G~l~~~d~~tG~~~--~~~~~~---~~~~~~sp~~~~~~l~v~~~d 370 (377)
T TIGR03300 308 -LKY---RQLT----APAVVGGYLVVGD-FEGYLHWLSREDGSFV--ARLKTD---GSGIASPPVVVGDGLLVQTRD 370 (377)
T ss_pred -ccC---Cccc----cCEEECCEEEEEe-CCCEEEEEECCCCCEE--EEEEcC---CCccccCCEEECCEEEEEeCC
Confidence 111 1112 3455788888865 4567899998776511 112222 111122334557788877653
No 69
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.90 E-value=1.1 Score=37.96 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEE-eCCEEEEEec------ccceEEEeeCCCCCccCCCc
Q 040781 169 DPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAV-NSRQLYVTEK------YSGITVSFDPSTKGWSGPFH 236 (316)
Q Consensus 169 ~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~~~y~~~~------~~~~i~~yD~~~~~W~~~~~ 236 (316)
.+..+-+||..+.+|.....--. .. -. .+.. .++.+|+.|. ....+..||..+.+|..+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~--G~-V~----~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGIS--GT-VT----DLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCce--EE-EE----EEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 57889999999999998843212 11 11 3332 4677888765 23467899999999987764
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.64 E-value=3.3 Score=34.34 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=72.9
Q ss_pred ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEcCCceeeeecCCCCceeecCCCCCC-----CCCCEEEEECC
Q 040781 82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVW-----RTDPVVALVGD 155 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~-----~~~~~~~~~~~ 155 (316)
.++.+|+..+.-..... +- . ...... .++.+|+... ....++|+.++++..+...... +.+-....-++
T Consensus 23 ~i~~~~~~~~~~~~~~~-~~--~-~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G 97 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDL-PG--P-NGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG 97 (246)
T ss_dssp EEEEEETTTTEEEEEES-SS--E-EEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS
T ss_pred EEEEEECCCCeEEEEec-CC--C-ceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC
Confidence 36778887776654432 22 1 112222 3577777654 3556669999998877543211 11112222346
Q ss_pred EEEEEcCcCCCCCCC--cEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 156 KVVVAGGACDFEDDP--LAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~--~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+|+-.......... ..+..++.. ++.+.+ ..+.. .. ++++. +..+|+.....+.|+.||+....
T Consensus 98 ~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-----pN----Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 98 NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-----PN----GIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp -EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-----EE----EEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-----cc----ceEECCcchheeecccccceeEEEeccccc
Confidence 777754211111111 457777777 555554 22211 11 55555 55799998888899999986544
No 71
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.37 E-value=1.2 Score=37.29 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=66.6
Q ss_pred cCCEEEEEcC---CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLSP---SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
++|.+|-..| .+.+..+|+.|++-..--+++.....-+++.+++++|..-= ......+||..+ .+.+..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ceEEEE
Confidence 5677777554 37899999999986544344545555678889999998851 224578899875 455544
Q ss_pred CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.+. ...+- |.+.++..+|+..|. +.|...||++-
T Consensus 126 ~~y--~~EGW----GLt~dg~~Li~SDGS-~~L~~~dP~~f 159 (264)
T PF05096_consen 126 FPY--PGEGW----GLTSDGKRLIMSDGS-SRLYFLDPETF 159 (264)
T ss_dssp EE---SSS------EEEECSSCEEEE-SS-SEEEEE-TTT-
T ss_pred Eec--CCcce----EEEcCCCEEEEECCc-cceEEECCccc
Confidence 444 34455 788888888888874 47789999753
No 72
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.37 E-value=3.7 Score=33.52 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=88.5
Q ss_pred eEEeeCCCC--ceeEccCCCCCCcccee--eeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCE
Q 040781 83 AHAYDARSH--VWIEIKNNQPSSFDFLL--RSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDK 156 (316)
Q Consensus 83 ~~~~d~~~~--~w~~~~~~~~~~~~~~~--~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~ 156 (316)
+.++|+..+ .|..-.. +. ..... ....++.+|+..+.+.++++|+.|++ |+.- ++...... ....+.+
T Consensus 5 l~~~d~~tG~~~W~~~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~-~~~~~~~ 78 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG-PG--IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPISGA-PVVDGGR 78 (238)
T ss_dssp EEEEETTTTEEEEEEECS-SS--CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCGGSG-EEEETTE
T ss_pred EEEEECCCCCEEEEEECC-CC--CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccccce-eeecccc
Confidence 567887655 4654211 11 11112 22367888888777899999999986 4332 12221111 3557888
Q ss_pred EEEEcCcCCCCCCCcEEEEEeCCCC--Ceee-cCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--c
Q 040781 157 VVVAGGACDFEDDPLAVEMYSVDTR--TWEI-CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--W 231 (316)
Q Consensus 157 v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~-~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W 231 (316)
+|+... ...+..+|..++ .|+. ....+........ ...+.++.+|+... .+.|.++|+++++ |
T Consensus 79 v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 79 VYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSS----SPAVDGDRLYVGTS-SGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--S----EEEEETTEEEEEET-CSEEEEEETTTTEEEE
T ss_pred cccccc-------eeeeEecccCCcceeeeecccccccccccccc----CceEecCEEEEEec-cCcEEEEecCCCcEEE
Confidence 887762 126888997776 4984 4332221111222 45566788887764 4578999998775 5
Q ss_pred cCCCcCCCCCccc---ceeeeeeEeeCCEEEEEecCC
Q 040781 232 SGPFHLRQFDHEK---KVFYSVITFANDRLIAVGLTG 265 (316)
Q Consensus 232 ~~~~~l~~~~~~~---~~~~~~l~~~~g~L~v~g~~~ 265 (316)
..-...+...... ......++..+|.+++....+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred EeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 4322122210000 001234444567777776543
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.68 E-value=4.8 Score=32.92 Aligned_cols=117 Identities=11% Similarity=0.082 Sum_probs=61.0
Q ss_pred eeeecCCEEEEEcC-CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee-
Q 040781 108 LRSSHSTLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI- 185 (316)
Q Consensus 108 ~~~s~~~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~- 185 (316)
++....|..|+..| .+.+-+|||..+...+--.-......-+....+..-+..+| ....++++|..|++=.+
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G------gDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG------GDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCC------CCceEEEEEcccCeeeee
Confidence 33333355455555 47899999998876543211111100001111222222222 23568899998876221
Q ss_pred cCCCCcccccCccccceeEEEeCC-EEEEEecccceEEEeeCCCCCccCCCcCC
Q 040781 186 CQSMPAVLKDSAASTWLSVAVNSR-QLYVTEKYSGITVSFDPSTKGWSGPFHLR 238 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~i~~yD~~~~~W~~~~~l~ 238 (316)
...- ...-. ++.++.. .+.+-|+....+.+||-.++.++.+..+.
T Consensus 97 ~rgH----~aqVN----tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 97 FRGH----LAQVN----TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc----cceee----EEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence 1100 11111 4555544 45556667778999999999977666443
No 74
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=92.18 E-value=4.9 Score=33.89 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=73.0
Q ss_pred ceeeeecCCC-CceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 123 KLSFSFDPLH-LAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 123 ~~~~v~np~t-~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
+.+.|||..| ++-..+| ++..........-....+..||.+ ..+-||+..+..=+...++.. ....+..+
T Consensus 77 GklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r--~l~gHtgy 147 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSR--ELAGHTGY 147 (343)
T ss_pred CeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcC------ceeEEEecccccccccceeee--eecCccce
Confidence 6788898765 5556564 444433222222356788888865 347889887653222222111 01111112
Q ss_pred e-eEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 202 L-SVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 202 ~-~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+ .+.+.++...+.+.......-||+++..=.... . .+......-.+.-.+++.++-|++... -+||.+.
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f--~--GH~gDV~slsl~p~~~ntFvSg~cD~~-----aklWD~R 217 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVF--H--GHTGDVMSLSLSPSDGNTFVSGGCDKS-----AKLWDVR 217 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccceEEEEe--c--CCcccEEEEecCCCCCCeEEecccccc-----eeeeecc
Confidence 1 344455666666654446678999987621111 1 111222222333347788888877654 6678776
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.81 E-value=7.5 Score=34.88 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=59.6
Q ss_pred EEEEEcCCceeeeecCCCCceeecCCCCCCC--CCCEE-EEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWR--TDPVV-ALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~--~~~~~-~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
.++..|-.+-+|.||-.|.+..++.++-... ....+ +.....++++.|.. ..+.+....|+.|-.--.++-
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~KieG 345 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEG 345 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeeecc
Confidence 4444444577899999999998886544332 11111 22345566666633 337777788888754333322
Q ss_pred ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... ....++..+|+.++. +-|++||+..+.
T Consensus 346 --~v~~~----~fsSdsk~l~~~~~~-GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 346 --VVSDF----TFSSDSKELLASGGT-GEVYVWNLRQNS 377 (514)
T ss_pred --EEeeE----EEecCCcEEEEEcCC-ceEEEEecCCcc
Confidence 11111 222344556666654 578999999874
No 76
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.62 E-value=2.6 Score=37.09 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=75.5
Q ss_pred CCEEEEEc-CCceeeeecCCCCc--eee-----cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC--C
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLA--WHH-----VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD--T 180 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~--w~~-----lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~--t 180 (316)
+..+|+.. |.+.+++|+..... ... +|+-..|| .+++. +..+|++... ...+.+|+.. +
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNEL------SNTVSVFDYDPSD 225 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEETT------TTEEEEEEEETTT
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecCC------CCcEEEEeecccC
Confidence 46777765 67888888665433 433 33323333 23333 3578888753 3446666555 6
Q ss_pred CCeeecC---CCCccccc--CccccceeEEEe--CCEEEEEecccceEEEeeCC--CCCccCCCcCCCCCcccceeeeee
Q 040781 181 RTWEICQ---SMPAVLKD--SAASTWLSVAVN--SRQLYVTEKYSGITVSFDPS--TKGWSGPFHLRQFDHEKKVFYSVI 251 (316)
Q Consensus 181 ~~W~~~~---~~p~~~~~--~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~--~~~W~~~~~l~~~~~~~~~~~~~l 251 (316)
+.++.+. .+|..... ..+ ++++. +..+|+.....+.|.+|++. ++..+.+...+.. ...-....
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~----~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~ 298 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPA----EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFA 298 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEE----EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEE
T ss_pred CceeEEEEeeeccccccccCCce----eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEE
Confidence 6776653 34332111 122 45555 67789988777889999884 3443333322221 01011112
Q ss_pred EeeCC-EEEEEecCCCCCCcceeeEEEee
Q 040781 252 TFAND-RLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 252 ~~~~g-~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.-+| .|++.....+ .+.++..|
T Consensus 299 ~s~~g~~l~Va~~~s~-----~v~vf~~d 322 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSN-----TVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEETTTT-----EEEEEEEE
T ss_pred EeCCCCEEEEEecCCC-----eEEEEEEe
Confidence 22344 4555543322 38889887
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.46 E-value=9.8 Score=34.29 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=69.2
Q ss_pred CCEEEEEcC-CceeeeecCCCCc-eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC-C
Q 040781 113 STLLYTLSP-SKLSFSFDPLHLA-WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS-M 189 (316)
Q Consensus 113 ~~~l~~~gg-~~~~~v~np~t~~-w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~-~ 189 (316)
.|.|++.|+ .+.+-+||-.++. .+.+..-..+-....+...+.++++.|+. ...+...|..+.. ...+- -
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD------d~v~k~~d~s~a~-v~~~l~~ 151 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD------DKVVKYWDLSTAY-VQAELSG 151 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC------CceEEEEEcCCcE-EEEEecC
Confidence 377777774 5789999933321 12221111111111223346677777752 2334444444433 11110 0
Q ss_pred CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED 269 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~ 269 (316)
..+.-++.. +.-.++.+.+.|++.+.|-.||..+.+ ..+..+... ++.......-.++.+..+|| .
T Consensus 152 htDYVR~g~-----~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg---~pVe~vl~lpsgs~iasAgG--n--- 217 (487)
T KOG0310|consen 152 HTDYVRCGD-----ISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHG---CPVESVLALPSGSLIASAGG--N--- 217 (487)
T ss_pred CcceeEeec-----cccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCC---CceeeEEEcCCCCEEEEcCC--C---
Confidence 000122211 122346788899999999999998874 223323322 22221111122334444443 2
Q ss_pred cceeeEEEee
Q 040781 270 VKSLKIWQVN 279 (316)
Q Consensus 270 ~~~~~iw~l~ 279 (316)
.++||.+-
T Consensus 218 --~vkVWDl~ 225 (487)
T KOG0310|consen 218 --SVKVWDLT 225 (487)
T ss_pred --eEEEEEec
Confidence 38999997
No 78
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.66 E-value=11 Score=32.82 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=54.2
Q ss_pred EEEEEc-CCceeeeecCCC-CceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC-CCCeeecCCC
Q 040781 115 LLYTLS-PSKLSFSFDPLH-LAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD-TRTWEICQSM 189 (316)
Q Consensus 115 ~l~~~g-g~~~~~v~np~t-~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~-t~~W~~~~~~ 189 (316)
.+|+.. ..+.+.+||..+ +++..+...+.......++.. +..+|+.+. ....+.+|+.. +++++.+...
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAES 76 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeee
Confidence 456664 346788888754 455444322222222223332 345566443 12446677765 4567655433
Q ss_pred CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC
Q 040781 190 PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~ 228 (316)
+. ..... .+++. +..+|+.....+.|.+||+.+
T Consensus 77 ~~--~~~p~----~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 77 PL--PGSPT----HISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cC--CCCce----EEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 32 11111 34444 567888876667889999864
No 79
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.56 E-value=12 Score=33.22 Aligned_cols=134 Identities=10% Similarity=0.180 Sum_probs=68.9
Q ss_pred CCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCC-------CCCCCCCEEEEECCEEEEEcC
Q 040781 90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAP-------RVWRTDPVVALVGDKVVVAGG 162 (316)
Q Consensus 90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~-------~~~~~~~~~~~~~~~v~~~gg 162 (316)
.+.|..++. .. ..-.-...+.|.+|++...+.++++++.-+ -.++.+. ........++...++++++..
T Consensus 189 ~~~Wt~l~~-~~--~~~~DIi~~kGkfYAvD~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R 264 (373)
T PLN03215 189 GNVLKALKQ-MG--YHFSDIIVHKGQTYALDSIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVER 264 (373)
T ss_pred CCeeeEccC-CC--ceeeEEEEECCEEEEEcCCCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEE
Confidence 357777742 11 111123447788999876678888884321 1222111 011112224345567777765
Q ss_pred cCCCC-----------CCCcEEEEE--eCCCCCeeecCCCCcc--cccCcccccee-----EEEeCCEEEEEecccceEE
Q 040781 163 ACDFE-----------DDPLAVEMY--SVDTRTWEICQSMPAV--LKDSAASTWLS-----VAVNSRQLYVTEKYSGITV 222 (316)
Q Consensus 163 ~~~~~-----------~~~~~v~vy--~~~t~~W~~~~~~p~~--~~~~~~~~~~~-----~~~~~~~~y~~~~~~~~i~ 222 (316)
..... .....++|| |.++.+|.++..+... +-.... .++- ....++.+|+.... ...
T Consensus 265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~-s~sv~a~e~pG~k~NcIYFtdd~--~~~ 341 (373)
T PLN03215 265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDT-CFSVLAHEFYGCLPNSIYFTEDT--MPK 341 (373)
T ss_pred EccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCc-cEEEecCCCCCccCCEEEEECCC--cce
Confidence 32110 112457777 6667899999876431 000111 0000 01235788888654 456
Q ss_pred EeeCCCCC
Q 040781 223 SFDPSTKG 230 (316)
Q Consensus 223 ~yD~~~~~ 230 (316)
+||++.++
T Consensus 342 v~~~~dg~ 349 (373)
T PLN03215 342 VFKLDNGN 349 (373)
T ss_pred EEECCCCC
Confidence 88888877
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.05 E-value=4.9 Score=33.80 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=51.9
Q ss_pred EEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 116 LYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 116 l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
+|+.+ ..+.+.+||+.+++....-..... ...++.. +..+++.++ ....+.+||..+++.... ++.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~--~~~- 71 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR--PRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGT--LPS- 71 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC--CCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEe--ccC-
Confidence 45554 357899999988764332111111 1122222 334666654 224588899888765432 111
Q ss_pred cccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781 193 LKDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 193 ~~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... .+++ .+..+|+.++..+.|..||+.+..
T Consensus 72 -~~~~~----~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 72 -GPDPE----LFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred -CCCcc----EEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 11111 2222 345677776655678888887643
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.86 E-value=0.32 Score=42.96 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
.-.||.|++..||+.|..+++.|++.+|+.|+-++.+.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 45799999999999999999999999999999998775
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.68 E-value=12 Score=35.24 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=64.8
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCC--------CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVW--------RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
.++.||+.+..+.++.+|..|++ |+.-+..+.. ......++.+++||+... ...+..+|.+|+
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TG 140 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTG 140 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCC
Confidence 47898987766789999999875 6543221110 011234456778776432 234777888877
Q ss_pred C--eeecC-CCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--ccC
Q 040781 182 T--WEICQ-SMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WSG 233 (316)
Q Consensus 182 ~--W~~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~~ 233 (316)
+ |+.-. ..... ....+ +..+.++.+|+... ..+.|.+||.++++ |+.
T Consensus 141 k~~W~~~~~~~~~~-~~~ts----sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 141 KVVWSKKNGDYKAG-YTITA----APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEeeccccccccc-ccccC----CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 5 87542 22110 01112 44566788887542 24678999998775 653
No 83
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.65 E-value=4.6 Score=33.79 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=62.0
Q ss_pred EEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 149 VVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 149 ~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
++.. .++.+|---|.. ..+.+..||+.|++=....++|. ...+- |+++.++.+|.+.-..+..+.||..
T Consensus 49 GL~~~~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~--~~FgE----Git~~~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPP--RYFGE----GITILGDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TT--T--EE----EEEEETTEEEEEESSSSEEEEEETT
T ss_pred cEEecCCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCc--cccce----eEEEECCEEEEEEecCCeEEEEccc
Confidence 4544 456666654532 34779999999998655566666 45556 8999999999999878889999997
Q ss_pred CCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecC
Q 040781 228 TKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLT 264 (316)
Q Consensus 228 ~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~ 264 (316)
+ ++.+...+.+ .....|...+.+|++-.|.
T Consensus 119 t--l~~~~~~~y~-----~EGWGLt~dg~~Li~SDGS 148 (264)
T PF05096_consen 119 T--LKKIGTFPYP-----GEGWGLTSDGKRLIMSDGS 148 (264)
T ss_dssp T--TEEEEEEE-S-----SS--EEEECSSCEEEE-SS
T ss_pred c--ceEEEEEecC-----CcceEEEcCCCEEEEECCc
Confidence 4 4444444433 1223444555566665553
No 84
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.59 E-value=13 Score=32.25 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=70.3
Q ss_pred cCCEEEEEc-CCceeeeecCCC-Cceee-------cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC-
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLH-LAWHH-------VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD- 179 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t-~~w~~-------lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~- 179 (316)
.+..+|+.. +.+.+.+||..+ +.... ++.-..++ .++.. +..+|+... ....+.+|+..
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~---~~~~~pdg~~lyv~~~------~~~~v~v~~~~~ 206 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR---HMVFHPNQQYAYCVNE------LNSSVDVWQLKD 206 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc---eEEECCCCCEEEEEec------CCCEEEEEEEeC
Confidence 356777766 567899998866 33221 11111111 23322 346667643 23456677765
Q ss_pred -CCCeeecC---CCCcccccCccccceeEE--EeCCEEEEEecccceEEEeeCCCC--CccCCCcCCCCCcccceeeeee
Q 040781 180 -TRTWEICQ---SMPAVLKDSAASTWLSVA--VNSRQLYVTEKYSGITVSFDPSTK--GWSGPFHLRQFDHEKKVFYSVI 251 (316)
Q Consensus 180 -t~~W~~~~---~~p~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~i~~yD~~~~--~W~~~~~l~~~~~~~~~~~~~l 251 (316)
+++.+.+. .+|........ -.++. -++..+|+.....+.|.+||..++ .+..+...+... .. ....+
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~--~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--~p-~~~~~ 281 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRW--AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--QP-RGFNI 281 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCcc--ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--cC-CceEE
Confidence 45554442 23331111100 00222 235678887666678888887543 333233222110 00 01122
Q ss_pred EeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 252 TFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 252 ~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
...+..|++..... ..+.+|.++
T Consensus 282 ~~dg~~l~va~~~~-----~~v~v~~~~ 304 (330)
T PRK11028 282 DHSGKYLIAAGQKS-----HHISVYEID 304 (330)
T ss_pred CCCCCEEEEEEccC-----CcEEEEEEc
Confidence 22344566655322 248999987
No 85
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.52 E-value=12 Score=31.60 Aligned_cols=133 Identities=20% Similarity=0.124 Sum_probs=70.9
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVL 193 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~ 193 (316)
|.|.+++..+-.=..||.++.-+..|.+...-.....+.-++.|+...-.. ..+..-|+.+..=+.+ +.|...
T Consensus 159 G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------naiaridp~~~~aev~-p~P~~~ 231 (353)
T COG4257 159 GNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NAIARIDPFAGHAEVV-PQPNAL 231 (353)
T ss_pred ccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cceEEcccccCCccee-cCCCcc
Confidence 777777755455578999998888875543333323333355555543111 1133344544432222 122211
Q ss_pred ccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEE
Q 040781 194 KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIA 260 (316)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v 260 (316)
.......|. ---+.+|+..-.++.+..||+.+..|.+-+ ||.. ....+..-+...|++.+
T Consensus 232 ~~gsRriws---dpig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs---~arpys~rVD~~grVW~ 291 (353)
T COG4257 232 KAGSRRIWS---DPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGS---KARPYSMRVDRHGRVWL 291 (353)
T ss_pred ccccccccc---CccCcEEEeccCCceeeEeCcccccceeee-CCCC---CCCcceeeeccCCcEEe
Confidence 111111111 123678888766778999999999999877 6653 11222233444566655
No 86
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.32 E-value=18 Score=32.14 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=71.1
Q ss_pred eEEeeCCCC--ceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEE
Q 040781 83 AHAYDARSH--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVV 158 (316)
Q Consensus 83 ~~~~d~~~~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~ 158 (316)
++++|...+ .|..- . +.. ........++.+|+.+..+.++.+|+.|++ |+.-.+ .... ......+++++
T Consensus 77 v~a~d~~tG~~~W~~~-~-~~~--~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~--~~p~v~~~~v~ 149 (377)
T TIGR03300 77 VVALDAETGKRLWRVD-L-DER--LSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVL--SPPLVANGLVV 149 (377)
T ss_pred EEEEEccCCcEeeeec-C-CCC--cccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceee--cCCEEECCEEE
Confidence 778887654 47533 1 211 111122356888876666789999998876 643211 1111 11223566776
Q ss_pred EEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--cc
Q 040781 159 VAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WS 232 (316)
Q Consensus 159 ~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~ 232 (316)
+..+ ...+..+|..+++ |+.-...+........ +.++.++.+|+.. ..+.+.++|+.+++ |+
T Consensus 150 v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~----sp~~~~~~v~~~~-~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 150 VRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSA----SPVIADGGVLVGF-AGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCC----CCEEECCEEEEEC-CCCEEEEEEccCCCEeee
Confidence 6532 2347788887764 8764322210011112 3345567666543 44578999987764 64
No 87
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.98 E-value=10 Score=31.29 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=60.6
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
.+.||.+. ..+.++.+||.+++-..+..+. ..+++.. ++++|+... ....++|+.+++++.+...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEeec
Confidence 46667766 4578999999998876543222 1233333 577777753 2356679999999887543
Q ss_pred Cc---ccccCccccceeEEEeCCEEEEEecc------c--ceEEEeeCCCCC
Q 040781 190 PA---VLKDSAASTWLSVAVNSRQLYVTEKY------S--GITVSFDPSTKG 230 (316)
Q Consensus 190 p~---~~~~~~~~~~~~~~~~~~~~y~~~~~------~--~~i~~yD~~~~~ 230 (316)
+. ...+.+. .++--+|.+|+.... . +.|+.+++. ++
T Consensus 79 ~~~~~~~~~~ND----~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~ 125 (246)
T PF08450_consen 79 PDGGVPFNRPND----VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK 125 (246)
T ss_dssp ETTCSCTEEEEE----EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE
T ss_pred cCCCcccCCCce----EEEcCCCCEEEEecCCCccccccccceEEECCC-Ce
Confidence 21 0122222 222336779987541 1 568999998 44
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.60 E-value=4 Score=36.67 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=76.5
Q ss_pred EcCCceeeeecCCCCceeecCCCCCCCCC-CEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCccccc
Q 040781 119 LSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKD 195 (316)
Q Consensus 119 ~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~ 195 (316)
+.++.++-+|+..+.+-.+. ....+.. .+..+ .++++.++|+. ...+.+||..+ +.+ ..+ . .+
T Consensus 44 Vt~S~rvqly~~~~~~~~k~--~srFk~~v~s~~fR~DG~LlaaGD~------sG~V~vfD~k~---r~iLR~~-~--ah 109 (487)
T KOG0310|consen 44 VTSSVRVQLYSSVTRSVRKT--FSRFKDVVYSVDFRSDGRLLAAGDE------SGHVKVFDMKS---RVILRQL-Y--AH 109 (487)
T ss_pred EecccEEEEEecchhhhhhh--HHhhccceeEEEeecCCeEEEccCC------cCcEEEecccc---HHHHHHH-h--hc
Confidence 33345788888877655432 1111111 12222 36889999863 34599999554 222 112 1 11
Q ss_pred CccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeE
Q 040781 196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKI 275 (316)
Q Consensus 196 ~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~i 275 (316)
..+.+..-.+..++.+.+.++....+..||..+..- ...+... +....+..+.-.++++++.|+++.. +.+
T Consensus 110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~h--tDYVR~g~~~~~~~hivvtGsYDg~-----vrl 180 (487)
T KOG0310|consen 110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGH--TDYVRCGDISPANDHIVVTGSYDGK-----VRL 180 (487)
T ss_pred cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCC--cceeEeeccccCCCeEEEecCCCce-----EEE
Confidence 111111122345788899888777788888887761 1112222 1223334455567889999987664 777
Q ss_pred EEee
Q 040781 276 WQVN 279 (316)
Q Consensus 276 w~l~ 279 (316)
|...
T Consensus 181 ~DtR 184 (487)
T KOG0310|consen 181 WDTR 184 (487)
T ss_pred EEec
Confidence 8776
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.41 E-value=36 Score=35.10 Aligned_cols=114 Identities=14% Similarity=0.184 Sum_probs=62.1
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCC-------------CCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEE
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPR-------------VWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMY 176 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~-------------~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy 176 (316)
++.+|+.. +.+.+.++|+.++....+..-. ....-.++++. +..+|+... ....+.+|
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~ 767 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRAL 767 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEE
Confidence 57777765 5678999999887654332100 00011123332 345777653 23568889
Q ss_pred eCCCCCeeecC---C-CCc---cccc-----C--ccccceeEEEe-CCEEEEEecccceEEEeeCCCCCcc
Q 040781 177 SVDTRTWEICQ---S-MPA---VLKD-----S--AASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWS 232 (316)
Q Consensus 177 ~~~t~~W~~~~---~-~p~---~~~~-----~--~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~ 232 (316)
|..++.-..+. + .+. .+.. . ....-.++++. +|.+|+.....+.|.+||+.++...
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 88876533221 0 000 0000 0 00001155554 4679999988889999999877644
No 90
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.86 E-value=23 Score=30.82 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=60.4
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecC-----CCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVD-----APRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp-----~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
..|+... |.+.+++|+...+.....- +-..+|. ++++ +.-.|++...+ ....+..||...++-+.
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH---i~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH---IVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEE 229 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcce---EEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEE
Confidence 4666666 6788999987766554432 2222321 2222 34567776432 22345567776778777
Q ss_pred cC---CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCC
Q 040781 186 CQ---SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 186 ~~---~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~ 228 (316)
++ .+|.++.......-..+.-+|..+|+.....+.|.+|-+..
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 74 46665444333111112233677899887667888885543
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.26 E-value=20 Score=29.54 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred ecCCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEEC-CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 111 SHSTLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALVG-DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 111 s~~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+.+..++..||.+.+.+||..|++-.+ +. -.....+ ++.+-. ..|++-|+. ...+.++|-++++-+.+.-
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVN-tV~fNeesSVv~Sgsf------D~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVN-TVRFNEESSVVASGSF------DSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeeeecc-cccceee-EEEecCcceEEEeccc------cceeEEEEcccCCCCccch
Confidence 344566666677899999999987532 21 0000000 111112 345555553 3558888888877665544
Q ss_pred CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.. ....- ......+...+.|...+.+..||+..++
T Consensus 141 lde--a~D~V----~Si~v~~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 141 LDE--AKDGV----SSIDVAEHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred hhh--hcCce----eEEEecccEEEeeccCCcEEEEEeecce
Confidence 322 22211 2223345566777777889999998776
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.70 E-value=20 Score=31.12 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=58.7
Q ss_pred ceeeeecCCCC-----ceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCCCcccccC
Q 040781 123 KLSFSFDPLHL-----AWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSMPAVLKDS 196 (316)
Q Consensus 123 ~~~~v~np~t~-----~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~p~~~~~~ 196 (316)
+.+++|+.... +.+.+......-.-.+++.+++++++..| ..+.+|+...++ +...+.... ...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~--~~~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDS--PFY 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-B--SSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecc--eEE
Confidence 67888877664 44444322222222355667888665545 568899988887 776654433 222
Q ss_pred ccccceeEEEeCCEEEEEecccc-eEEEeeCCCCCccCCCc
Q 040781 197 AASTWLSVAVNSRQLYVTEKYSG-ITVSFDPSTKGWSGPFH 236 (316)
Q Consensus 197 ~~~~~~~~~~~~~~~y~~~~~~~-~i~~yD~~~~~W~~~~~ 236 (316)
.. ++.+.++.+++.+...+ .++.||.+..+...+..
T Consensus 132 i~----sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 132 IT----SLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EE----EEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred EE----EEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence 22 67777888887765433 35677886666555553
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=81.63 E-value=22 Score=32.48 Aligned_cols=66 Identities=11% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEE-eCCEEEEEecccceEEEeeCCCCC
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAV-NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+++-.++|| ....+-|.|..+-+=+.-..++..-..+. +.++ -+..+++..-..+.|.+||+.+++
T Consensus 476 dgrtLivGG------eastlsiWDLAapTprikaeltssapaCy-----ALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGG------EASTLSIWDLAAPTPRIKAELTSSAPACY-----ALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred CCceEEecc------ccceeeeeeccCCCcchhhhcCCcchhhh-----hhhcCCccceeeeeccCCcEEEEEcccce
Confidence 567777887 34667787777655333333332111111 2222 255666665566788999999877
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.98 E-value=51 Score=32.77 Aligned_cols=101 Identities=12% Similarity=-0.016 Sum_probs=49.6
Q ss_pred CEEEEEcC-CceeeeecCCCCcee-ecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 114 TLLYTLSP-SKLSFSFDPLHLAWH-HVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 114 ~~l~~~gg-~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
+.+++.|+ .+.+.+||..++... .+. .......+.. .++..++.|+. ...+.+||..+..= .+..+
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~g~~latgs~------dg~I~iwD~~~~~~-~~~~~ 657 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVSIGTIK---TKANICCVQFPSESGRSLAFGSA------DHKVYYYDLRNPKL-PLCTM 657 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEe---cCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCCc-cceEe
Confidence 33344443 467888988765432 221 1000011111 12455666642 24588999875421 01111
Q ss_pred CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
. .+... ...+.+.++.+++.++..+.|..||+.+.
T Consensus 658 ~---~h~~~--V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 658 I---GHSKT--VSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred c---CCCCC--EEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 0 11111 11344455666677777778999998753
No 95
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.93 E-value=21 Score=33.17 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=58.9
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-C---
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-Q--- 187 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~--- 187 (316)
-.||+.|....+|.+|...+.|-. |..+....--.+.+ ...++++|+. ...||.+|+++.+=... .
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccEEEeecCcceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhhhheeeeccc
Confidence 445666645689999999988832 22222111111112 2457777763 35588888876542221 1
Q ss_pred CCCcccccCccccceeEEEeC-CEEEEEecccceEEEeeCCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNS-RQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.++............++.+.+ |....+|...|.++.||+.+.+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 111100111111122455556 6667777788889999998764
No 96
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.52 E-value=64 Score=32.08 Aligned_cols=95 Identities=8% Similarity=0.000 Sum_probs=48.8
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA 198 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~ 198 (316)
..+.+.+||..+++....-..... .-..++.. +..+++.|+. ...+.+||..++.- +..+.. ...
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~------Dg~v~iWd~~~~~~--~~~~~~--~~~-- 619 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSD------DGSVKLWSINQGVS--IGTIKT--KAN-- 619 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcC------CCEEEEEECCCCcE--EEEEec--CCC--
Confidence 347899999877654221011110 01122222 3456666653 24588888876431 111101 000
Q ss_pred ccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781 199 STWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 199 ~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...+.. .++.+.+.|+..+.|..||+.+..
T Consensus 620 --v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 620 --ICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred --eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 012222 246777778788899999997643
No 97
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.57 E-value=63 Score=31.36 Aligned_cols=104 Identities=12% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC-c
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG-W 231 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~-W 231 (316)
++++++.|+.+ ..|.+||..++---. ..- . ..+.. .++.+. .+...+.....|.|.+||+.+-. +
T Consensus 361 Dgq~iaTG~eD------gKVKvWn~~SgfC~v-TFt-e--Hts~V---t~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 361 DGQLIATGAED------GKVKVWNTQSGFCFV-TFT-E--HTSGV---TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred CCcEEEeccCC------CcEEEEeccCceEEE-Eec-c--CCCce---EEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 56777777643 348888777643211 100 0 11111 122222 34444444467789999997543 4
Q ss_pred cCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 232 SGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.+. .|.| ....+..+...|.|+.+|..... .|.+|.++
T Consensus 428 RTft-~P~p----~QfscvavD~sGelV~AG~~d~F----~IfvWS~q 466 (893)
T KOG0291|consen 428 RTFT-SPEP----IQFSCVAVDPSGELVCAGAQDSF----EIFVWSVQ 466 (893)
T ss_pred eeec-CCCc----eeeeEEEEcCCCCEEEeeccceE----EEEEEEee
Confidence 4433 3434 12223334445788888864432 47888887
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=79.30 E-value=24 Score=31.79 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=66.8
Q ss_pred EEeeCCCCceeEccCCCCCCc----cceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEE
Q 040781 84 HAYDARSHVWIEIKNNQPSSF----DFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVV 159 (316)
Q Consensus 84 ~~~d~~~~~w~~~~~~~~~~~----~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~ 159 (316)
+.||....+...+.. +.... ..+.++-.+..|.+.|..+.+++.-..|++|..--.+...-....+...+.+|++
T Consensus 283 ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKP-PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred EEeeccccccccccC-CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 446666666655531 21111 1223333346666666567888888888888542222222222233333456777
Q ss_pred EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEE-EeCCEEEEEecccceEEEeeCC
Q 040781 160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVA-VNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
.||+ ..|.++|.++++= +.....+-..... +.| ..++.++..|...|.|-.||-.
T Consensus 362 ~~~~-------GeV~v~nl~~~~~--~~rf~D~G~v~gt----s~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 362 SGGT-------GEVYVWNLRQNSC--LHRFVDDGSVHGT----SLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EcCC-------ceEEEEecCCcce--EEEEeecCcccee----eeeecCCCceEEeccCcceEEEeccc
Confidence 7764 3588888887731 1111010011111 222 2356666667677777778754
No 99
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=78.43 E-value=57 Score=30.29 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=62.3
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCC----CCC-CCCEEEEEC-CEEEEEcCcCCCCCCCcEEEEEeCCCCC-
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPR----VWR-TDPVVALVG-DKVVVAGGACDFEDDPLAVEMYSVDTRT- 182 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~----~~~-~~~~~~~~~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~- 182 (316)
.++.+|+....+.++.+|+.|++ |+.-.... .+. .....+..+ ++||+... ...+..+|.+|++
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~ 132 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQ 132 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCE
Confidence 46888887766789999999875 65422111 000 111223345 67776432 2347778887764
Q ss_pred -eeecCCCCc-ccccCccccceeEEEeCCEEEEEec--------ccceEEEeeCCCCC--ccC
Q 040781 183 -WEICQSMPA-VLKDSAASTWLSVAVNSRQLYVTEK--------YSGITVSFDPSTKG--WSG 233 (316)
Q Consensus 183 -W~~~~~~p~-~~~~~~~~~~~~~~~~~~~~y~~~~--------~~~~i~~yD~~~~~--W~~ 233 (316)
|+.-..-+. ....... +..+.++.+|+... ..+.++++|..+++ |+.
T Consensus 133 ~W~~~~~~~~~~~~~i~s----sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTG----APTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred eeeecCCCCcCcceEecC----CCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 876422110 0000112 44566788776432 24678999997664 753
No 100
>PRK00178 tolB translocation protein TolB; Provisional
Probab=76.92 E-value=58 Score=29.52 Aligned_cols=104 Identities=12% Similarity=0.022 Sum_probs=56.0
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
...++++|..+++-+.+...+.....+....-+.+++...... ....+.+||..++..+.+...+. .....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~--~~~~~--- 292 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD----GNPEIYVMDLASRQLSRVTNHPA--IDTEP--- 292 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC----CCceEEEEECCCCCeEEcccCCC--CcCCe---
Confidence 3579999999988877753332211222212234554432211 12568889999988877643221 11111
Q ss_pred eeEEEeCCEEEEEecc--cceEEEeeCCCCCccCCC
Q 040781 202 LSVAVNSRQLYVTEKY--SGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 202 ~~~~~~~~~~y~~~~~--~~~i~~yD~~~~~W~~~~ 235 (316)
...-+|..+++.... ...|+.+|+.+++.+.+.
T Consensus 293 -~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 293 -FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 111245566665432 235788898887755443
No 101
>PRK13684 Ycf48-like protein; Provisional
Probab=76.54 E-value=52 Score=28.82 Aligned_cols=158 Identities=14% Similarity=0.224 Sum_probs=74.7
Q ss_pred CCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeee-cCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCC
Q 040781 90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSF-DPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFE 167 (316)
Q Consensus 90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~-np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~ 167 (316)
..+|..+.. +............++.++++|..+.++.- +....+|..++.. .......++. -+.+++++|..
T Consensus 161 G~tW~~~~~-~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg~~---- 234 (334)
T PRK13684 161 GKNWEALVE-DAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLARG---- 234 (334)
T ss_pred CCCceeCcC-CCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCC-CcccceeeeEcCCCCEEEEecC----
Confidence 357887743 32111112222234555566655556554 4555679888542 2222223322 35677777631
Q ss_pred CCCcEEEEEe-CC-CCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCccc
Q 040781 168 DDPLAVEMYS-VD-TRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEK 244 (316)
Q Consensus 168 ~~~~~v~vy~-~~-t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~ 244 (316)
....+. .. ..+|+.+. .|. ... .....++++. ++.+|+.+.. +.|+.-.-..++|+.+...... .
T Consensus 235 ----G~~~~~s~d~G~sW~~~~-~~~--~~~-~~~l~~v~~~~~~~~~~~G~~-G~v~~S~d~G~tW~~~~~~~~~---~ 302 (334)
T PRK13684 235 ----GQIRFNDPDDLESWSKPI-IPE--ITN-GYGYLDLAYRTPGEIWAGGGN-GTLLVSKDGGKTWEKDPVGEEV---P 302 (334)
T ss_pred ----CEEEEccCCCCCcccccc-CCc--ccc-ccceeeEEEcCCCCEEEEcCC-CeEEEeCCCCCCCeECCcCCCC---C
Confidence 122342 22 34899753 221 100 0011133333 5678887754 3444334455789876521111 1
Q ss_pred ceeeeeeEeeCCEEEEEecCC
Q 040781 245 KVFYSVITFANDRLIAVGLTG 265 (316)
Q Consensus 245 ~~~~~~l~~~~g~L~v~g~~~ 265 (316)
...+..+...+++.+++|..+
T Consensus 303 ~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 303 SNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred cceEEEEEeCCCceEEECCCc
Confidence 112233334567888887543
No 102
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.27 E-value=26 Score=30.33 Aligned_cols=106 Identities=8% Similarity=0.113 Sum_probs=57.3
Q ss_pred CEEEEEc-CcCCCC--CCC-cEEEEEeCCCC-----CeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEee
Q 040781 155 DKVVVAG-GACDFE--DDP-LAVEMYSVDTR-----TWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFD 225 (316)
Q Consensus 155 ~~v~~~g-g~~~~~--~~~-~~v~vy~~~t~-----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD 225 (316)
..++++| +..... ... .++.+|+.... +.+.+..... ..... +++..++.+.+..|. .|..|+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~----ai~~~~~~lv~~~g~--~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVT----AICSFNGRLVVAVGN--KLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EE----EEEEETTEEEEEETT--EEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcce----EhhhhCCEEEEeecC--EEEEEE
Confidence 5788888 332222 122 67889998875 4444422211 22222 667778886555543 788999
Q ss_pred CCCCC-ccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 226 PSTKG-WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 226 ~~~~~-W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+..++ +........+ .....+...++.+++..... .+.++.++
T Consensus 114 l~~~~~l~~~~~~~~~-----~~i~sl~~~~~~I~vgD~~~------sv~~~~~~ 157 (321)
T PF03178_consen 114 LDNSKTLLKKAFYDSP-----FYITSLSVFKNYILVGDAMK------SVSLLRYD 157 (321)
T ss_dssp EETTSSEEEEEEE-BS-----SSEEEEEEETTEEEEEESSS------SEEEEEEE
T ss_pred ccCcccchhhheecce-----EEEEEEeccccEEEEEEccc------CEEEEEEE
Confidence 88877 5554433333 13334555677665544322 26666665
No 103
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=75.93 E-value=16 Score=31.92 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=42.3
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCC-ccCCCcCCCC---CcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEe
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKG-WSGPFHLRQF---DHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQV 278 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~-W~~~~~l~~~---~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l 278 (316)
+..++.+-+|+.|+..+.|+.||-+++. ++.......| ..+...........+-+|+-.+. .+.|++|+=
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea------dKtIk~~ke 438 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA------DKTIKMYKE 438 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC------CcceEEEec
Confidence 4566677889999988899999988763 5555433334 12222222222223444433222 234999998
Q ss_pred eccCCc
Q 040781 279 NIKGGS 284 (316)
Q Consensus 279 ~~~~~~ 284 (316)
| +..
T Consensus 439 D--e~a 442 (460)
T KOG0285|consen 439 D--EHA 442 (460)
T ss_pred c--ccc
Confidence 8 643
No 104
>PRK04043 tolB translocation protein TolB; Provisional
Probab=75.51 E-value=64 Score=29.33 Aligned_cols=104 Identities=8% Similarity=0.061 Sum_probs=58.8
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
..+++++|..|++-+.+...+.....+....-+.++....... ....+.++|..++.++.+...+. ....+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~~--~d~~p--- 282 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYPG--IDVNG--- 282 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCCC--ccCcc---
Confidence 4689999999988777743222111112211233554433221 23568899999999988854432 11111
Q ss_pred eeEEEeCCEEEEEeccc--ceEEEeeCCCCCccCCC
Q 040781 202 LSVAVNSRQLYVTEKYS--GITVSFDPSTKGWSGPF 235 (316)
Q Consensus 202 ~~~~~~~~~~y~~~~~~--~~i~~yD~~~~~W~~~~ 235 (316)
...-+|..+|+..... ..|+.+|+.+++.+.+.
T Consensus 283 -~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 283 -NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 1222456777765422 26889999888754443
No 105
>PRK04792 tolB translocation protein TolB; Provisional
Probab=75.02 E-value=68 Score=29.42 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=59.9
Q ss_pred cCCEEEEE---cCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTL---SPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~---gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.|..|++. +|..+++++|..+++.+++.........+....-+..++...... ....+.++|..+++++.+..
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEec
Confidence 34444443 234579999999998887753221111222211233444433211 22467888998888887642
Q ss_pred CCcccccCccccceeEEEeCCEEEEEeccc--ceEEEeeCCCCCccCCC
Q 040781 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYS--GITVSFDPSTKGWSGPF 235 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~~i~~yD~~~~~W~~~~ 235 (316)
-.. ..... ...-+|..+++.+... ..|+.+|+.++....+.
T Consensus 348 ~g~--~~~~~----~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 348 EGE--QNLGG----SITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCC--CCcCe----eECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 111 11111 2223456666654322 35788999888754443
No 106
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.79 E-value=93 Score=30.85 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.5
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVD 139 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp 139 (316)
.++.||+....+.++.+|+.|++ |+.-+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcC
Confidence 47899998877889999999985 66544
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.40 E-value=24 Score=29.16 Aligned_cols=107 Identities=15% Similarity=0.297 Sum_probs=49.1
Q ss_pred cEEEEEeCCCCCeeecCCCC--cccccCccccceeEEEeCCEEEEEec-ccce--EEEeeCCCCCccCCCcCCCCCcccc
Q 040781 171 LAVEMYSVDTRTWEICQSMP--AVLKDSAASTWLSVAVNSRQLYVTEK-YSGI--TVSFDPSTKGWSGPFHLRQFDHEKK 245 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p--~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~--i~~yD~~~~~W~~~~~l~~~~~~~~ 245 (316)
..|.|.+..+++|..-..+. .++.|.. .|+. .+.-.+.|+... ..+. |+.-+.+.+.|+.-..-+.| ..
T Consensus 185 n~VkiW~~~~~~w~~e~~l~~H~dwVRDV--AwaP-~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~---~~ 258 (299)
T KOG1332|consen 185 NLVKIWKFDSDSWKLERTLEGHKDWVRDV--AWAP-SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP---DV 258 (299)
T ss_pred cceeeeecCCcchhhhhhhhhcchhhhhh--hhcc-ccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC---cc
Confidence 34666666777887643221 1122211 1111 111123344432 3333 34446667888754411223 11
Q ss_pred eeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCC
Q 040781 246 VFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGE 293 (316)
Q Consensus 246 ~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~ 293 (316)
.....--..++-|.+-+|. + .+.+|+-+ . +. +|+++..
T Consensus 259 ~w~vSWS~sGn~LaVs~Gd-N-----kvtlwke~--~-~G-kw~~v~~ 296 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGD-N-----KVTLWKEN--V-DG-KWEEVGE 296 (299)
T ss_pred eEEEEEeccccEEEEecCC-c-----EEEEEEeC--C-CC-cEEEccc
Confidence 2222222334555555542 2 38899877 3 22 4988765
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=74.24 E-value=31 Score=29.57 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=50.3
Q ss_pred CcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe----CCEEEEEecccceEEEeeCCCCC-ccCCCcCCCCCccc
Q 040781 170 PLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN----SRQLYVTEKYSGITVSFDPSTKG-WSGPFHLRQFDHEK 244 (316)
Q Consensus 170 ~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~-W~~~~~l~~~~~~~ 244 (316)
...+.+||..|-+-- +...|.+ .+.. +++.+ .+.+|+.+...+.|-.||--++. -..+...- .
T Consensus 237 Hp~~rlYdv~T~Qcf-vsanPd~-qht~-----ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-----~ 304 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCF-VSANPDD-QHTG-----AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-----G 304 (430)
T ss_pred CCceeEEeccceeEe-eecCccc-cccc-----ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-----C
Confidence 345788888775522 2222442 1111 12222 58899999988899889876543 11122111 1
Q ss_pred ceeeeee-EeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 245 KVFYSVI-TFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 245 ~~~~~~l-~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.-.-+.+ ...+|+.++-.|.+. .+++|++.
T Consensus 305 gsevcSa~Ftkn~kyiLsSG~DS-----~vkLWEi~ 335 (430)
T KOG0640|consen 305 GSEVCSAVFTKNGKYILSSGKDS-----TVKLWEIS 335 (430)
T ss_pred CceeeeEEEccCCeEEeecCCcc-----eeeeeeec
Confidence 1122333 345666666655443 38889886
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=73.25 E-value=53 Score=27.37 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=50.0
Q ss_pred CCEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+..+|+.+ ..+.+.+||+.+++... ++..... ..++.. +..+++.++. ...+.+||..+.+ .+..
T Consensus 42 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~--~~~~ 110 (300)
T TIGR03866 42 GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRK--VLAE 110 (300)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCe--EEeE
Confidence 45677665 34789999998877643 3321111 122222 2345555431 2358889887753 1221
Q ss_pred CCcccccCccccceeEEEe-CCEEEEEec-ccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN-SRQLYVTEK-YSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~-~~~~i~~yD~~~~~ 230 (316)
++. ..... ++++. ++.+++++. ....+..||..+.+
T Consensus 111 ~~~--~~~~~----~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 111 IPV--GVEPE----GMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred eeC--CCCcc----eEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 211 11111 33333 344444443 33356678887654
No 110
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.15 E-value=4.9 Score=27.56 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=18.6
Q ss_pred CCEEEEEec-----------------ccceEEEeeCCCCCccCCC
Q 040781 208 SRQLYVTEK-----------------YSGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 208 ~~~~y~~~~-----------------~~~~i~~yD~~~~~W~~~~ 235 (316)
+|.+|+... .++.++.|||.+++.+.+.
T Consensus 9 ~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 9 TGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp T--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh
Confidence 478888765 4578999999999865443
No 111
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.12 E-value=86 Score=32.43 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=62.7
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecC------CCCCCC-------------CC-CEEEE-ECCEEEEEcCcCCCCCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVD------APRVWR-------------TD-PVVAL-VGDKVVVAGGACDFEDD 169 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp------~~~~~~-------------~~-~~~~~-~~~~v~~~gg~~~~~~~ 169 (316)
.++.||+.. +.+.+.++|+.++....+. +..... .. .++++ -++.+|+... .
T Consensus 750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------~ 823 (1057)
T PLN02919 750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------Y 823 (1057)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC------C
Confidence 346678765 5678999999876543221 000000 01 12222 2346777653 2
Q ss_pred CcEEEEEeCCCCCeeecCCCCc-ccc-----cCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 170 PLAVEMYSVDTRTWEICQSMPA-VLK-----DSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 170 ~~~v~vy~~~t~~W~~~~~~p~-~~~-----~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...+.+||..++....+..... ... ......-.++++. +|.+|+.....+.|..+|+.+++
T Consensus 824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 3568999998877665422100 000 0000001155554 57899999888899999998875
No 112
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.42 E-value=58 Score=27.40 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=52.4
Q ss_pred EEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC--CeeecCCCC
Q 040781 115 LLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR--TWEICQSMP 190 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~~~~~p 190 (316)
++|+-..+..+...||.++. |..+ -.-|......++++. +++|.+.+. +...+..|+ -|....--
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~g~------lYfl~~~tGs~~w~f~~~~- 93 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYSGG------LYFLCVKTGSQIWNFVILE- 93 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEccCc------EEEEEecchhheeeeeehh-
Confidence 33333344667778999885 6654 233333333335555 667765432 555555555 58765211
Q ss_pred cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. -...+ .+...++.+|.-. +.+..++.|+.+..
T Consensus 94 ~--vk~~a----~~d~~~glIycgs-hd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 94 T--VKVRA----QCDFDGGLIYCGS-HDGNFYALDPKTYG 126 (354)
T ss_pred h--hccce----EEcCCCceEEEec-CCCcEEEecccccc
Confidence 0 11112 3444567777654 44456788887653
No 113
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=72.39 E-value=43 Score=30.09 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=36.1
Q ss_pred CEEEEEecc---cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecC-CCCCCcceeeEEEe
Q 040781 209 RQLYVTEKY---SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLT-GEAEDVKSLKIWQV 278 (316)
Q Consensus 209 ~~~y~~~~~---~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~-~~~~~~~~~~iw~l 278 (316)
+.+|++... ...++.|++-.++ +. -|.. ..+.....+|+|+++... .++...--+.||.-
T Consensus 320 DvLYvF~~~~~g~~~Ll~YN~I~k~---v~-tPi~------chG~alf~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 320 DVLYVFYAREEGRYLLLPYNLIRKE---VA-TPII------CHGYALFEDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred eEEEEEEECCCCcEEEEechhhhhh---hc-CCee------ccceeEecCCEEEEEecCCCCcceeccceeecC
Confidence 568887542 2357889988766 44 2222 122334568999999865 23333334888975
No 114
>PF13013 F-box-like_2: F-box-like domain
Probab=72.35 E-value=8.8 Score=27.42 Aligned_cols=30 Identities=13% Similarity=-0.024 Sum_probs=24.7
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHHhhhhH
Q 040781 17 NNSIVHGDILEAILSQVPLIDLASACYVSR 46 (316)
Q Consensus 17 ~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK 46 (316)
...+||+||+..|+..-..+++...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 467899999999999999888876665555
No 115
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=72.34 E-value=5.3 Score=34.27 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=53.1
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC-------------
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED------------- 269 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~------------- 269 (316)
+...++|.+|+....++.+..+|++++++..+..+|.- -..+... |++.++|.....+.
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~-------~rGL~f~-G~llvVgmSk~R~~~~f~glpl~~~l~ 278 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF-------TRGLAFA-GDFAFVGLSKLRESRVFGGLPIEERLD 278 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCC-------Cccccee-CCEEEEEeccccCCCCcCCCchhhhhh
Confidence 44567899999999888999999999998877766542 1233333 77888887543321
Q ss_pred cceeeEEEeeccCCchhhhhhcCC
Q 040781 270 VKSLKIWQVNIKGGSLEELKEIGE 293 (316)
Q Consensus 270 ~~~~~iw~l~~~~~~~~~W~~i~~ 293 (316)
...=.||..|+..++.-.|.+++.
T Consensus 279 ~~~CGv~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 279 ALGCGVAVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred hhcccEEEEECCCCCEEEEEEeCC
Confidence 112356777744544333655443
No 116
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.83 E-value=9.1 Score=21.39 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=17.3
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCC
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~ 228 (316)
+.++.++.+|+.+. .+.+.++|+++
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 56778899999875 46789999864
No 117
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=70.76 E-value=23 Score=33.40 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=56.7
Q ss_pred CceeeeecCCCCceee--cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-----CCCCccc-
Q 040781 122 SKLSFSFDPLHLAWHH--VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-----QSMPAVL- 193 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~--lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-----~~~p~~~- 193 (316)
.+.+.||||..++-.. -+-+...|..-..-+.+++++++-|++.. ....+.+||..+-.=+-+ +-.|...
T Consensus 741 Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~--SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv 818 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS--SERQVQMYDAQTLDLRPLYTQVLDVAPSPLV 818 (1012)
T ss_pred CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc--chhhhhhhhhhhccCCcceeeeecccCcccc
Confidence 3789999999876432 22233344444455567887777776543 234467777665332221 1111100
Q ss_pred ccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 194 KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.+ -.+.+.+++.|.....|..|.+--++
T Consensus 819 P~Y--------D~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 819 PHY--------DYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccc--------cCCCceEEEecCCCceEEEEEecCCC
Confidence 111 12347788888777788999887665
No 118
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.64 E-value=74 Score=30.90 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=54.1
Q ss_pred eecCCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 110 SSHSTLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 110 ~s~~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.|....+...|+.+.+.+||-.|.++.+ ++- . ...+..+ -+++.++.|+. ...+++||..+..=- +
T Consensus 381 vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~-y~l~~~Fvpgd~~Iv~G~k------~Gel~vfdlaS~~l~--E 448 (888)
T KOG0306|consen 381 VSSDSILLASGAGESIKIWNRDTLKCIRTITC---G-YILASKFVPGDRYIVLGTK------NGELQVFDLASASLV--E 448 (888)
T ss_pred eecCceeeeecCCCcEEEEEccCcceeEEecc---c-cEEEEEecCCCceEEEecc------CCceEEEEeehhhhh--h
Confidence 3444666667766899999999877644 321 1 1112222 36677777753 244888887764321 1
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
..+. +-+. -|.-....++.-++.++..+.|-.||..
T Consensus 449 ti~A---Hdga-IWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 449 TIRA---HDGA-IWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred hhhc---cccc-eeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 1110 1000 0111122356677777766666666553
No 119
>PRK04792 tolB translocation protein TolB; Provisional
Probab=69.74 E-value=91 Score=28.60 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=56.4
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~ 200 (316)
+...++++|..+++-+.+...+.....+....-+.+++...... ....+.++|..+++.+.+..... .....
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~~--~~~~p-- 311 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHRA--IDTEP-- 311 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCCC--Cccce--
Confidence 34679999999988766643332222222222244555443211 22468888999988877643211 11111
Q ss_pred ceeEEEeCCEEEEEecc--cceEEEeeCCCCCccCCC
Q 040781 201 WLSVAVNSRQLYVTEKY--SGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 201 ~~~~~~~~~~~y~~~~~--~~~i~~yD~~~~~W~~~~ 235 (316)
...-++..+++.... ...|+.+|+.++++..+.
T Consensus 312 --~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 312 --SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred --EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 111234556555432 235788899887765543
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=69.46 E-value=1e+02 Score=29.42 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 203 SVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.+.+ .|.+.+.||..+.+..||+.+++
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred eeecCCcceEEEecCcccceEEecccccc
Confidence 44545 35688888888899999999887
No 121
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=69.34 E-value=68 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=25.8
Q ss_pred CCCCCCCCCCEEEEEC----CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 139 DAPRVWRTDPVVALVG----DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 139 p~~~~~~~~~~~~~~~----~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
...|.+|..|.+.++. ..++++||....... .-.|..|..+-+
T Consensus 82 GdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~-------qRTTenWNsVvD 128 (337)
T PF03089_consen 82 GDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPG-------QRTTENWNSVVD 128 (337)
T ss_pred CCCCcccccceEEEEEECCcEEEEEECCcccCCcc-------ccchhhcceecc
Confidence 3678889888776653 347788886533200 113566877643
No 122
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=68.87 E-value=60 Score=26.21 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=48.6
Q ss_pred CEEEEEcC-CceeeeecCCCCcee-ecCCCCCCCCCCEEEEEC-CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLSP-SKLSFSFDPLHLAWH-HVDAPRVWRTDPVVALVG-DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~gg-~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+.+++.+. .+.+.+||..+++-. .+.. ... .-..+.... .+.+++++. ...+.+||..+++-...-. .
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~-~ 217 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTG-HTG-EVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGTLR-G 217 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEec-Ccc-ccceEEECCCcCEEEEecC------CCcEEEEECCCCceecchh-h
Confidence 34344443 578999998755432 2211 110 111222222 223444432 2348889887644322110 1
Q ss_pred cccccCccccceeEEEeC-CEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVNS-RQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..... ++.... +.+++.+...+.|..||..+..
T Consensus 218 ~--~~~i~----~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 218 H--ENGVN----SVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred c--CCceE----EEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 1 11111 344444 4555555546788999987643
No 123
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=68.23 E-value=93 Score=28.11 Aligned_cols=107 Identities=9% Similarity=0.139 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEec-ccceEEEeeCCCCCccCCCcCCCCCcccceee
Q 040781 170 PLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFY 248 (316)
Q Consensus 170 ~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~ 248 (316)
...+.+||..+.. .+...|. ...... ++.+..+-||++.+ ..+.|..||+.+.+ .+..++.+ ....-
T Consensus 368 d~~vkiwdlks~~--~~a~Fpg-ht~~vk----~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~---~~~~v 435 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPG-HTGPVK----AISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLD---EKKEV 435 (506)
T ss_pred CceEEEEEcCCcc--ccccCCC-CCCcee----EEEeccCceEEEEEecCCeEEEEEehhhc--ccceeecc---ccccc
Confidence 3558899998876 4444433 011112 55566555555544 55569999998665 23333333 11111
Q ss_pred eee-EeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781 249 SVI-TFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKAL 298 (316)
Q Consensus 249 ~~l-~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~ 298 (316)
..+ ....|..+.+++ ..+.|+..+ ... +.|+++...+...
T Consensus 436 ~s~~fD~SGt~L~~~g-------~~l~Vy~~~--k~~-k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAG-------SDLQVYICK--KKT-KSWTEIKELADHS 476 (506)
T ss_pred eeEEEcCCCCeEEeec-------ceeEEEEEe--ccc-ccceeeehhhhcc
Confidence 111 223444444442 237888887 433 4499887766544
No 124
>PRK00178 tolB translocation protein TolB; Provisional
Probab=68.21 E-value=94 Score=28.15 Aligned_cols=105 Identities=9% Similarity=-0.001 Sum_probs=56.2
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~ 200 (316)
|..+++++|..+++.+++.........+....-+.+++...... ....+.++|..+++++.+..... .....
T Consensus 265 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~~--~~~~~-- 336 (430)
T PRK00178 265 GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVGN--YNARP-- 336 (430)
T ss_pred CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCCC--Cccce--
Confidence 34589999999998887743221111122211234555443211 22457788888888877642111 11111
Q ss_pred ceeEEEeCCEEEEEeccc--ceEEEeeCCCCCccCCC
Q 040781 201 WLSVAVNSRQLYVTEKYS--GITVSFDPSTKGWSGPF 235 (316)
Q Consensus 201 ~~~~~~~~~~~y~~~~~~--~~i~~yD~~~~~W~~~~ 235 (316)
...-++..+++..... ..|..+|+.++..+.+.
T Consensus 337 --~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 337 --RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT 371 (430)
T ss_pred --EECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc
Confidence 1222456666655322 25789999887755444
No 125
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=68.07 E-value=70 Score=26.61 Aligned_cols=108 Identities=7% Similarity=0.009 Sum_probs=53.2
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP 190 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p 190 (316)
+.++..||...++.+|..+++.+..-.-.+.. -|.++. -..+|+. |+ ....+.+.|.+|.+=..+ ++..
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~~~qils-G~------EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNANGQILS-GA------EDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeecccCcceee-cC------CCccEEEEeccccceeEEecccc
Confidence 66677778789999999999887542111111 111111 0122221 22 223477888888775544 3321
Q ss_pred c-ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 191 A-VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ...+.....|.++...+....+.|+. ..+..|++...+
T Consensus 199 ~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse 238 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSE 238 (325)
T ss_pred ChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCC
Confidence 1 01232333455433333333344433 244667776544
No 126
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=66.88 E-value=92 Score=27.58 Aligned_cols=116 Identities=16% Similarity=0.047 Sum_probs=66.1
Q ss_pred CCEEEEEcCC-----ceeeeecCCCCcee-ecCCCCCCCCCCEEEEECCEEEEEcCcC---CCCCCCcEEEEEeCCCCCe
Q 040781 113 STLLYTLSPS-----KLSFSFDPLHLAWH-HVDAPRVWRTDPVVALVGDKVVVAGGAC---DFEDDPLAVEMYSVDTRTW 183 (316)
Q Consensus 113 ~~~l~~~gg~-----~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~~~~v~~~gg~~---~~~~~~~~v~vy~~~t~~W 183 (316)
+..+|+.... +++.|.|..+++-. .++--..++. .+.--+..+|+...+. ..+.....+++||..|.+=
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4556776543 78999999997753 3543333332 2323356788876531 1223557799999999874
Q ss_pred eecCCCCccccc---CccccceeEEEeCCEEEEEecc-cceEEEeeCCCCCc
Q 040781 184 EICQSMPAVLKD---SAASTWLSVAVNSRQLYVTEKY-SGITVSFDPSTKGW 231 (316)
Q Consensus 184 ~~~~~~p~~~~~---~~~~~~~~~~~~~~~~y~~~~~-~~~i~~yD~~~~~W 231 (316)
..--++|. .++ ......+++.-+|..+|+..-. .+.|.+.|+.+++.
T Consensus 90 ~~~i~~p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 90 IADIELPE-GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred EeEEccCC-CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 33222222 111 1111112333445678887743 56788999988874
No 127
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=66.83 E-value=75 Score=26.53 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=37.1
Q ss_pred CEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 209 RQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 209 ~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.-+|+.||....++.||..++. ......... ... -.+.-..-+|.+|..|..+. .+.||++.
T Consensus 236 k~~fVaGged~~~~kfDy~Tge-Ei~~~nkgh--~gp-VhcVrFSPdGE~yAsGSEDG-----TirlWQt~ 297 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGE-EIGSYNKGH--FGP-VHCVRFSPDGELYASGSEDG-----TIRLWQTT 297 (334)
T ss_pred CceEEecCcceEEEEEeccCCc-eeeecccCC--CCc-eEEEEECCCCceeeccCCCc-----eEEEEEec
Confidence 3678888877778899988776 211100110 011 11222345888998885443 39999998
No 128
>smart00284 OLF Olfactomedin-like domains.
Probab=64.85 E-value=84 Score=26.37 Aligned_cols=114 Identities=15% Similarity=0.048 Sum_probs=59.6
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCC----CCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVD----TRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~----t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.++++..+... ....+..|... .+.+...-.+|. .-.+. |-++-+|.+|.....+..|..||+.+++
T Consensus 35 ~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~Gt----G~VVYngslYY~~~~s~~iiKydL~t~~ 105 (255)
T smart00284 35 SLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPH--AGQGT----GVVVYNGSLYFNKFNSHDICRFDLTTET 105 (255)
T ss_pred ceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCC--ccccc----cEEEECceEEEEecCCccEEEEECCCCc
Confidence 45666654321 12335555543 333333334555 33333 5667778888876666789999999998
Q ss_pred ccCCCcCCCCC--cccce-----eeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 231 WSGPFHLRQFD--HEKKV-----FYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 231 W~~~~~l~~~~--~~~~~-----~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
-.....||... +.... ...-+...++.|.++=..... ...|.|=+|+
T Consensus 106 v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~--~g~ivvSkLn 159 (255)
T smart00284 106 YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN--AGKIVISKLN 159 (255)
T ss_pred EEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC--CCCEEEEeeC
Confidence 53333344331 11111 112345566678777543222 2235556666
No 129
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.73 E-value=1.2e+02 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+++.+..+|+.|+..+.|.-+++.+.+
T Consensus 332 cv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred eEEEecccceeeccCCceEEEeeecccC
Confidence 6888999999999988999999987765
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.08 E-value=37 Score=29.12 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=30.1
Q ss_pred eeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCc
Q 040781 253 FANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMP 295 (316)
Q Consensus 253 ~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p 295 (316)
.....++.+|.........++.||+.+ +...+ |.+++.+|
T Consensus 181 r~~~p~iAvgs~e~a~~~~~~~Iye~~--e~~rK-w~kva~L~ 220 (361)
T KOG2445|consen 181 RMHEPLIAVGSDEDAPHLNKVKIYEYN--ENGRK-WLKVAELP 220 (361)
T ss_pred cccCceEEEEcccCCccccceEEEEec--CCcce-eeeehhcC
Confidence 334567788876666677789999999 65544 99998887
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=62.13 E-value=61 Score=29.18 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=40.3
Q ss_pred eEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 203 SVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.+++ +|.++..|...+.+-.||+.+.. .+...|+. .... ..+...++.-+++..+.+. .+.+|.|.
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpgh--t~~v--k~i~FsENGY~Lat~add~----~V~lwDLR 419 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGH--TGPV--KAISFSENGYWLATAADDG----SVKLWDLR 419 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCC--CCce--eEEEeccCceEEEEEecCC----eEEEEEeh
Confidence 45555 67888888888888999998877 44544443 1222 1233344444455433221 28899986
No 132
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=60.59 E-value=6.3 Score=34.09 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=34.6
Q ss_pred CCCCCCcHHHHHHHHhcCC--------hhhhHHHhhhhHHHHHHhhcc
Q 040781 16 TNNSIVHGDILEAILSQVP--------LIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 16 ~~~~~Lp~dll~~IL~rLp--------~~~l~r~r~VcK~W~~li~s~ 55 (316)
..|..||.+++.+|+.|+. .++.+.+..||+.|+....+.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 4688999999999999994 357889999999999988764
No 133
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=59.37 E-value=88 Score=30.41 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=51.3
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCC-CCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWR-TDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~-~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
|..+++.+ ...+.+||-.|++-.+.=.....+ .-.......+...++-|+.+ ..+++|+..++ .+.-.+.
T Consensus 34 Gr~va~~a-~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaD-----GsVqif~~~s~---~~~~tfn 104 (888)
T KOG0306|consen 34 GRAVAVSA-LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYAD-----GSVQIFSLESE---EILITFN 104 (888)
T ss_pred CcEEEEec-cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecC-----ceEEeeccCCC---ceeeeec
Confidence 44444433 368999999998543221111111 11122233444444434422 34889988876 2211222
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+..+.. ..-+. .|.-.+.|+..+.|.+||+-.+.
T Consensus 105 --gHK~AVt--~l~fd~~G~rlaSGskDt~IIvwDlV~E~ 140 (888)
T KOG0306|consen 105 --GHKAAVT--TLKFDKIGTRLASGSKDTDIIVWDLVGEE 140 (888)
T ss_pred --ccccceE--EEEEcccCceEeecCCCccEEEEEeccce
Confidence 2222211 11111 24556666677788889886554
No 134
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=58.47 E-value=1.1e+02 Score=25.52 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=52.9
Q ss_pred EEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeC----CCCCeeecCCCCc
Q 040781 116 LYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSV----DTRTWEICQSMPA 191 (316)
Q Consensus 116 l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~----~t~~W~~~~~~p~ 191 (316)
|..+++.-......+..+.|.+=|.+. +.++++..... ...+--|.+ ..+.|...-.+|.
T Consensus 3 l~~v~~p~~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~lp~ 66 (249)
T KOG3545|consen 3 LYAVGGPVTVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYRLPY 66 (249)
T ss_pred eEEeccceEEEeeccccceeecCCCcc-----------cCceEEecccc-----CceEEEeccHHHhhccCcceEEeCCC
Confidence 344444445666677778887654322 45566663221 122223333 3345555555666
Q ss_pred ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.-... +-++-+|.+|.....+..|..||+.++.
T Consensus 67 --~~~gT----g~VVynGs~yynk~~t~~ivky~l~~~~ 99 (249)
T KOG3545|consen 67 --SWDGT----GHVVYNGSLYYNKAGTRNIIKYDLETRT 99 (249)
T ss_pred --Ccccc----ceEEEcceEEeeccCCcceEEEEeecce
Confidence 32233 4556678888877777788999999854
No 135
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=58.30 E-value=1.5e+02 Score=27.22 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=51.3
Q ss_pred CceeeeecCCCC-ce-eecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccc
Q 040781 122 SKLSFSFDPLHL-AW-HHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS 199 (316)
Q Consensus 122 ~~~~~v~np~t~-~w-~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~ 199 (316)
..++.+|+...+ .. +.+...........+...+ +.++.|+. ...|.+.|.++++=...-.. . .....
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~------D~tvriWd~~~~~~~~~l~~-h--s~~is- 292 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSD------DGTVRIWDVRTGECVRKLKG-H--SDGIS- 292 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecC------CCcEEEEeccCCeEEEeeec-c--CCceE-
Confidence 378899988333 22 4443333332211221223 67777763 35588888887442222110 0 11111
Q ss_pred cceeEEEe-CCEEEEEecccceEEEeeCCCCCc
Q 040781 200 TWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 200 ~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
++++. ++.+.+.+...+.|..||+.++..
T Consensus 293 ---~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 293 ---GLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred ---EEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 33444 455666666788999999998884
No 136
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=58.27 E-value=9.8 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCCCCcHHHHHHHHhcCChhhhHH
Q 040781 16 TNNSIVHGDILEAILSQVPLIDLAS 40 (316)
Q Consensus 16 ~~~~~Lp~dll~~IL~rLp~~~l~r 40 (316)
+.|..||.|+...||+.|.-.+|-.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5699999999999999999888753
No 137
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.00 E-value=1.3e+02 Score=26.14 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=49.2
Q ss_pred EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCe-eecCCCCccc
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTW-EICQSMPAVL 193 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W-~~~~~~p~~~ 193 (316)
+-+.+||...+-.||..++.--.+-++......-.....++++++.+. ..+.+|.+++-+= +.+. +|.
T Consensus 141 LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--------~~i~i~q~d~A~v~~~i~-~~~-- 209 (362)
T KOG0294|consen 141 LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--------NKIDIYQLDNASVFREIE-NPK-- 209 (362)
T ss_pred eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--------cEEEEEecccHhHhhhhh-ccc--
Confidence 334456666777788877654333222211111111112455555542 5688887765431 2221 111
Q ss_pred ccCccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781 194 KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.. . .+...++...++|+....|..+|....
T Consensus 210 r~--l----~~~~l~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 210 RI--L----CATFLDGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred cc--e----eeeecCCceEEEecCCceEEEeccCCC
Confidence 11 1 333445566666666677889998763
No 138
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=55.87 E-value=1.7e+02 Score=27.14 Aligned_cols=134 Identities=11% Similarity=0.064 Sum_probs=68.7
Q ss_pred EEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcC--C---------CCCCCcEEEEEeCCCC
Q 040781 115 LLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGAC--D---------FEDDPLAVEMYSVDTR 181 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~--~---------~~~~~~~v~vy~~~t~ 181 (316)
.+|+-+..+.++.+|+.|++ |+.--. ...++.....||+..... . .......+..+|..++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 35554445789999999987 543111 000111124455532110 0 0112345777887776
Q ss_pred C--eeecCC-CCcc----cccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccCCCcCCCCCcccceeeeeeE
Q 040781 182 T--WEICQS-MPAV----LKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSGPFHLRQFDHEKKVFYSVIT 252 (316)
Q Consensus 182 ~--W~~~~~-~p~~----~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~~~~l~~~~~~~~~~~~~l~ 252 (316)
+ |+.-.. .... .+.... ..++.++.+|+.. ..+.+.++|..+++ |+. . ++.+ -.....+.
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~----~~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~~-~-~~~~----~~a~P~~~ 445 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGG----SLATAGNLVFAGA-ADGYFRAFDATTGKELWKF-R-TPSG----IQATPMTY 445 (488)
T ss_pred cEeeEeeCCccccccccCCcccCc----ceEecCCeEEEEC-CCCeEEEEECCCCceeeEE-E-CCCC----ceEcCEEE
Confidence 4 876422 1000 011112 3456778888765 55788999998775 542 2 3322 11222223
Q ss_pred eeCCEEEEEecCC
Q 040781 253 FANDRLIAVGLTG 265 (316)
Q Consensus 253 ~~~g~L~v~g~~~ 265 (316)
..+|++|++...+
T Consensus 446 ~~~g~~yv~~~~g 458 (488)
T cd00216 446 EVNGKQYVGVMVG 458 (488)
T ss_pred EeCCEEEEEEEec
Confidence 5689999887544
No 139
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=55.76 E-value=1.2e+02 Score=25.34 Aligned_cols=149 Identities=8% Similarity=0.058 Sum_probs=70.3
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCe-eecCCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTW-EICQSMPA 191 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W-~~~~~~p~ 191 (316)
+-|+.....+.+.+||..++.+...+-|.....-..+++. +++.++.. . ....+.+.+..++.= ..+.++..
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-n-----nkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-N-----NKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-c-----CCccEEEEEccCCCccccceEhhh
Confidence 4443333458899999999987655322211111223222 23322222 1 122355555554321 11222211
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
...+.. +.+.+.+. ++++....+....+..|+.++. +..-..+... .++........+|+.++.++.+..
T Consensus 211 ~~ah~~--~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh---~rWvWdc~FS~dg~YlvTassd~~--- 281 (311)
T KOG0315|consen 211 FQAHNG--HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH---QRWVWDCAFSADGEYLVTASSDHT--- 281 (311)
T ss_pred eecccc--eEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecC---CceEEeeeeccCccEEEecCCCCc---
Confidence 011111 11122222 5667777777778888888765 3221213332 333333444556666666654433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
..+|.+.
T Consensus 282 --~rlW~~~ 288 (311)
T KOG0315|consen 282 --ARLWDLS 288 (311)
T ss_pred --eeecccc
Confidence 7889987
No 140
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=55.66 E-value=1.2e+02 Score=25.32 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCC-----CCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCC
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDT-----RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t-----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~ 228 (316)
..+++++.+.... .+..|.... +.....-.+|. .-.+. |-++-+|.+|.-...++.|..||+.+
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~Gt----G~vVYngslYY~~~~s~~IvkydL~t 98 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGT----GHVVYNGSLYYNKYNSRNIVKYDLTT 98 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccC----CeEEECCcEEEEecCCceEEEEECcC
Confidence 4567777654322 455554432 22333334554 22333 55666777777666677899999999
Q ss_pred CCccCCCcCCCCCcc--cce-----eeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 229 KGWSGPFHLRQFDHE--KKV-----FYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 229 ~~W~~~~~l~~~~~~--~~~-----~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.-..-..||..... ..+ ...-+...++.|.++-.....+ ..+.|=++|
T Consensus 99 ~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~--g~ivvskld 154 (250)
T PF02191_consen 99 RSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN--GNIVVSKLD 154 (250)
T ss_pred CcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC--CcEEEEeeC
Confidence 884412225443111 111 1123445566788886543322 225566666
No 141
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=54.97 E-value=1.5e+02 Score=26.08 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=55.8
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCcccccCccc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKDSAAS 199 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~ 199 (316)
|..++-+||..|.++.+. +..-+...+...+.+++++-|.. ...+.++|...+.=-++ +.-.. .-+
T Consensus 338 gDRTikvW~~st~efvRt--l~gHkRGIAClQYr~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEe-LvR---- 404 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEE-LVR---- 404 (499)
T ss_pred CCceEEEEeccceeeehh--hhcccccceehhccCeEEEecCC------CceEEEEeccccHHHHHHhchHH-hhh----
Confidence 557899999999888654 23333333444567788888753 24577887776653222 11000 011
Q ss_pred cceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 200 TWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 200 ~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.+ ++.=.+-|++.+.|-+||+.+..
T Consensus 405 ---ciRF-d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 405 ---CIRF-DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred ---heee-cCceeeeccccceEEEEeccccc
Confidence 2222 34555677788889999987654
No 142
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=54.85 E-value=1.5e+02 Score=26.21 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=59.5
Q ss_pred CCEEEEEcCCceeeeecC-----CCC-ceeecCCC---CCCCCC--CEEEEE--CCEEEEEc-C-c-CCCCCCCcEEEEE
Q 040781 113 STLLYTLSPSKLSFSFDP-----LHL-AWHHVDAP---RVWRTD--PVVALV--GDKVVVAG-G-A-CDFEDDPLAVEMY 176 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np-----~t~-~w~~lp~~---~~~~~~--~~~~~~--~~~v~~~g-g-~-~~~~~~~~~v~vy 176 (316)
|..+|+... +.+++.|. .+. .|..+..- ...+.. ..++.. +.++|+.. + . ..+......+.++
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 456566554 68888884 332 24433211 011111 123333 57888843 2 2 1122355689999
Q ss_pred eCCCCCeeecCCCCcccccCccccceeEEEe--CC-EEEEEecccceEEEeeCCCCC
Q 040781 177 SVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SR-QLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 177 ~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~-~~y~~~~~~~~i~~yD~~~~~ 230 (316)
|.+++ +.+..++. ..... ++++. +. .+|+..+..+.|.++|..+.+
T Consensus 285 D~~t~--kvi~~i~v--G~~~~----~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 285 DAKTG--KRLRKIEL--GHEID----SINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ECCCC--eEEEEEeC--CCcee----eEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 97664 44444333 22222 34443 56 788888777889999998875
No 143
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.30 E-value=1.8e+02 Score=26.96 Aligned_cols=98 Identities=5% Similarity=0.044 Sum_probs=55.9
Q ss_pred EEcCCceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccccc
Q 040781 118 TLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKD 195 (316)
Q Consensus 118 ~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~ 195 (316)
.++-...+|+||-.++.-..|-... ........ ..+.++++|.. ...+++||..+..= +..+-. .+
T Consensus 192 aValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~------~g~v~iwD~~~~k~--~~~~~~--~h 259 (484)
T KOG0305|consen 192 AVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTS------DGTVQIWDVKEQKK--TRTLRG--SH 259 (484)
T ss_pred EEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeec------CCeEEEEehhhccc--cccccC--Cc
Confidence 3442358999999999977775544 22222211 24677777753 24589998765431 111111 01
Q ss_pred CccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 196 ~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ...++..=++.+...|...+.|..+|+....
T Consensus 260 ~---~rvg~laW~~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 260 A---SRVGSLAWNSSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred C---ceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence 1 1112222246667777777889999987655
No 144
>PRK04922 tolB translocation protein TolB; Provisional
Probab=54.08 E-value=1.7e+02 Score=26.56 Aligned_cols=113 Identities=12% Similarity=-0.017 Sum_probs=57.8
Q ss_pred CCEEEEE-c--CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 113 STLLYTL-S--PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 113 ~~~l~~~-g--g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
|..|++. . |..+++++|..+++.+++..-......+....-+.+++...... ....+.++|..+++.+.+..-
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~~ 334 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTFQ 334 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCeEEeecC
Confidence 4455443 2 34589999999998777643221111122211233444432211 123577778888887766421
Q ss_pred CcccccCccccceeEEEeCCEEEEEecc--cceEEEeeCCCCCccCCC
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKY--SGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~i~~yD~~~~~W~~~~ 235 (316)
.. ..... ...-+|..+++.... ...|..+|+.++....+.
T Consensus 335 g~--~~~~~----~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 335 GN--YNARA----SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred CC--CccCE----EECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 11 11111 222245666665432 236889999887755443
No 145
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=53.62 E-value=2e+02 Score=27.14 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=42.2
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEeCCCC--CeeecCCCCcccc------cCccccceeEEEeCCEEEEEecccceEEE
Q 040781 152 LVGDKVVVAGGACDFEDDPLAVEMYSVDTR--TWEICQSMPAVLK------DSAASTWLSVAVNSRQLYVTEKYSGITVS 223 (316)
Q Consensus 152 ~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~~~~~p~~~~------~~~~~~~~~~~~~~~~~y~~~~~~~~i~~ 223 (316)
+.+++||+.... ..+..+|..|+ .|+.-...+.... .... ++++.++.+|+.. ..+.+++
T Consensus 67 v~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r----g~av~~~~v~v~t-~dg~l~A 134 (527)
T TIGR03075 67 VVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR----GVALYDGKVFFGT-LDARLVA 134 (527)
T ss_pred EECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccc----cceEECCEEEEEc-CCCEEEE
Confidence 367888886431 23677787776 4876432221000 1112 5667788988755 3457899
Q ss_pred eeCCCCC--ccC
Q 040781 224 FDPSTKG--WSG 233 (316)
Q Consensus 224 yD~~~~~--W~~ 233 (316)
+|.++++ |+.
T Consensus 135 LDa~TGk~~W~~ 146 (527)
T TIGR03075 135 LDAKTGKVVWSK 146 (527)
T ss_pred EECCCCCEEeec
Confidence 9998775 653
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=52.44 E-value=2.5e+02 Score=27.87 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=34.3
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.|+++|.. ...+.+||.+.++= +-....++.+-.. ++..-+|..+.+.+...|.+..||+++..
T Consensus 215 DVVaiG~~------~G~ViifNlK~dki--l~sFk~d~g~Vts---lSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 215 DVVAIGLE------NGTVIIFNLKFDKI--LMSFKQDWGRVTS---LSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred eEEEEecc------CceEEEEEcccCcE--EEEEEccccceeE---EEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 46666642 24478888887651 1111111111111 02222356667777677888999999876
No 147
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=51.95 E-value=1.6e+02 Score=25.49 Aligned_cols=186 Identities=10% Similarity=0.098 Sum_probs=71.6
Q ss_pred CCceeEccCCCC-CCccce-eeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCC
Q 040781 90 SHVWIEIKNNQP-SSFDFL-LRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFE 167 (316)
Q Consensus 90 ~~~w~~~~~~~~-~~~~~~-~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~ 167 (316)
..+|.+++. +. .+.... ..+...+...+.+..+.++.-.=.=+.|+.+..............-+.++++++...
T Consensus 90 G~tW~~v~l-~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G--- 165 (302)
T PF14870_consen 90 GKTWERVPL-SSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG--- 165 (302)
T ss_dssp TSS-EE-----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS---
T ss_pred CCCcEEeec-CCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc---
Confidence 457988742 21 121111 222233455555544555555445567887643222111111112345777776322
Q ss_pred CCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEee--CCCCCccCCCcCCCCCcccc
Q 040781 168 DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFD--PSTKGWSGPFHLRQFDHEKK 245 (316)
Q Consensus 168 ~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD--~~~~~W~~~~~l~~~~~~~~ 245 (316)
..+...|+....|+....... .+-.. -...-++.+|++. ..+.|..=| -..++|.+.. .|... ..
T Consensus 166 ---~~~~s~~~G~~~w~~~~r~~~--~riq~----~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~--~~ 232 (302)
T PF14870_consen 166 ---NFYSSWDPGQTTWQPHNRNSS--RRIQS----MGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKT--NG 232 (302)
T ss_dssp ---SEEEEE-TT-SS-EEEE--SS--S-EEE----EEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS----
T ss_pred ---cEEEEecCCCccceEEccCcc--ceehh----ceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCccc--Cc
Confidence 224445667778987754322 22111 1122356777776 334444444 3566787733 33320 11
Q ss_pred eeeeeeE-eeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh---cCCCcHHHHHHHh
Q 040781 246 VFYSVIT-FANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE---IGEMPKALLEKLK 303 (316)
Q Consensus 246 ~~~~~l~-~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~---i~~~p~~~~~~~~ 303 (316)
+..-.+. ...+.++++|+.+. ++.-. +.+ +.|++ ...+|..+++=.|
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~--------l~~S~--DgG-ktW~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGT--------LLVST--DGG-KTWQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT---------EEEES--STT-SS-EE-GGGTTSSS---EEEE
T ss_pred eeeEEEEecCCCCEEEEeCCcc--------EEEeC--CCC-ccceECccccCCCCceEEEEE
Confidence 1112223 23578888887543 34444 333 44854 4567777765433
No 148
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=51.57 E-value=1.3e+02 Score=24.24 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=47.5
Q ss_pred CEEEEEcC-CceeeeecCCCCceee-cCCCCCCCCCCEEEEEC-CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLSP-SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALVG-DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~gg-~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+.+++.++ .+.+.+||..+++... +.... ..-..+.... .++++.+.. ...+.+||..+++= +..+.
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~--~~~~~ 174 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGKC--VATLT 174 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEcC------CCcEEEEEcccccc--ceeEe
Confidence 34444444 6789999988654332 22111 0111222222 344444431 23478888864331 11111
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ...... .+... ++..+++++..+.|..||+.+..
T Consensus 175 ~-~~~~i~----~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 175 G-HTGEVN----SVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred c-Cccccc----eEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 1 010111 33333 33344444446788999998644
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=51.53 E-value=2.1e+02 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=29.8
Q ss_pred ceeeeecCCEEEEEcCCceeeeecCCCCceeecCC
Q 040781 106 FLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDA 140 (316)
Q Consensus 106 ~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~ 140 (316)
....+++|..+++.++.+.+++||..+++.+.+++
T Consensus 480 ~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 480 RLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred eEEEcCCCCEEEEEeccceEEEEEcccceeecchh
Confidence 34567789999999988999999999999998863
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=51.41 E-value=1.8e+02 Score=26.89 Aligned_cols=96 Identities=9% Similarity=0.117 Sum_probs=50.3
Q ss_pred EcCCceeeeecCCCCc----eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccc
Q 040781 119 LSPSKLSFSFDPLHLA----WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLK 194 (316)
Q Consensus 119 ~gg~~~~~v~np~t~~----w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~ 194 (316)
.+..+.+.+||..-.. |.+. ...|..+.++...+..+++--|+ ...+.+||..+.+=. ..+.+ .
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~--HsAP~~gicfspsne~l~vsVG~------Dkki~~yD~~s~~s~--~~l~y--~ 250 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEA--HSAPCRGICFSPSNEALLVSVGY------DKKINIYDIRSQAST--DRLTY--S 250 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhh--ccCCcCcceecCCccceEEEecc------cceEEEeeccccccc--ceeee--c
Confidence 3334667777754321 2221 11122222344456666665564 355889998865422 22222 1
Q ss_pred cCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 195 DSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 195 ~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.-. ++++. +|.+.++|...+.|+.||+....
T Consensus 251 ~Pls----tvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 251 HPLS----TVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred CCcc----eeeecCCceEEEeecCCceEEEEecccCC
Confidence 1112 45554 45666666677889999987544
No 151
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=50.78 E-value=63 Score=28.35 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=31.6
Q ss_pred EEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEec---ccceEEEeeCCCC
Q 040781 174 EMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK---YSGITVSFDPSTK 229 (316)
Q Consensus 174 ~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~---~~~~i~~yD~~~~ 229 (316)
..||..++++..+..... .... .|+.+.-.+..+|+... ..+.|.+|++..+
T Consensus 18 ~~~d~~~g~l~~~~~~~~--~~~P--s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~ 72 (345)
T PF10282_consen 18 FRFDEETGTLTLVQTVAE--GENP--SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD 72 (345)
T ss_dssp EEEETTTTEEEEEEEEEE--SSSE--CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT
T ss_pred EEEcCCCCCceEeeeecC--CCCC--ceEEEEeCCCEEEEEEccccCCCCEEEEEECCC
Confidence 334568889987754322 1111 23333336788999976 4678888887765
No 152
>PTZ00420 coronin; Provisional
Probab=48.95 E-value=2.5e+02 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=18.6
Q ss_pred CCEEEEEecccceEEEeeCCCCC
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.+|+.|...+.|..||...+.
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCc
Confidence 47888888777789999987664
No 153
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=48.83 E-value=1.6e+02 Score=24.67 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=35.0
Q ss_pred eEEEeCCE-EEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 203 SVAVNSRQ-LYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 203 ~~~~~~~~-~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.++.+-+. -.+.+...+.|.++|+.++...... +|.++ .... ..-+..+|..++..-... ...+|+|-
T Consensus 129 ~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-iPe~~--~~i~-sl~v~~dgsml~a~nnkG-----~cyvW~l~ 197 (311)
T KOG0315|consen 129 TVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-IPEDD--TSIQ-SLTVMPDGSMLAAANNKG-----NCYVWRLL 197 (311)
T ss_pred eEEecCCcceEEeecCCCcEEEEEccCCcccccc-CCCCC--ccee-eEEEcCCCcEEEEecCCc-----cEEEEEcc
Confidence 44555333 3344446678999999999865544 44331 1222 122334555444442222 26667775
No 154
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=48.69 E-value=37 Score=17.24 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.3
Q ss_pred eEEE-eCCEEEEEecccceEEEe
Q 040781 203 SVAV-NSRQLYVTEKYSGITVSF 224 (316)
Q Consensus 203 ~~~~-~~~~~y~~~~~~~~i~~y 224 (316)
++++ .+|.+|+.....+.|..|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 5555 578999998777777765
No 155
>PTZ00334 trans-sialidase; Provisional
Probab=48.32 E-value=1.2e+02 Score=29.98 Aligned_cols=83 Identities=8% Similarity=0.100 Sum_probs=47.9
Q ss_pred eEEEeCCEEEE-Eec-----ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeC-CEEEEEecCCCCCCcceeeE
Q 040781 203 SVAVNSRQLYV-TEK-----YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAN-DRLIAVGLTGEAEDVKSLKI 275 (316)
Q Consensus 203 ~~~~~~~~~y~-~~~-----~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~-g~L~v~g~~~~~~~~~~~~i 275 (316)
++...+|.+.+ +.+ ..-.+..|-.+++.|.--..+++. .-....+++++ |+|+|+..|.+. .-.+
T Consensus 265 GI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~----gC~~P~I~EWe~gkLlM~t~C~dG----~RrV 336 (780)
T PTZ00334 265 GVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSAD----GCSDPSVVEWKEGKLMMMTACDDG----RRRV 336 (780)
T ss_pred eEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCC----CCCCCEEEEEcCCeEEEEEEeCCC----CEEE
Confidence 66666777544 222 112356676666779643334544 22334678885 999998876542 1356
Q ss_pred EEeeccCCchhhhhh-cCCCcH
Q 040781 276 WQVNIKGGSLEELKE-IGEMPK 296 (316)
Q Consensus 276 w~l~~~~~~~~~W~~-i~~~p~ 296 (316)
|+-. +.+.. |+| ++.+|+
T Consensus 337 YES~--DmG~t-WtEAlGTLsr 355 (780)
T PTZ00334 337 YESG--DKGDS-WTEALGTLSR 355 (780)
T ss_pred EEEC--CCCCC-hhhCCCccce
Confidence 7776 54433 986 455543
No 156
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=48.08 E-value=42 Score=18.42 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=12.2
Q ss_pred EEEEEecccceEEEeeCCCCC
Q 040781 210 QLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 210 ~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+|+. ...+.|.++|.++++
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGK 21 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTS
T ss_pred EEEEe-CCCCEEEEEECCCCC
Confidence 34444 455667777777665
No 157
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=47.92 E-value=1.7e+02 Score=24.77 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=53.0
Q ss_pred cEEEEEeCC-CCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceee
Q 040781 171 LAVEMYSVD-TRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFY 248 (316)
Q Consensus 171 ~~v~vy~~~-t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~ 248 (316)
..+.+++.. .++|.-..-+.....+.-. +++.. .|.+...+.+...+..|.-..++|..+..|..+.++. -
T Consensus 37 k~vriw~~~~~~s~~ck~vld~~hkrsVR----svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEV--K- 109 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDDGHKRSVR----SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEV--K- 109 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccccchheee----eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccce--e-
Confidence 557888877 7888766443221122222 33332 3555555556667778887888888887777662222 1
Q ss_pred eeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 249 SVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 249 ~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+..-...|+++.....+ +++-||+.+
T Consensus 110 ~Vaws~sG~~LATCSRD-----KSVWiWe~d 135 (312)
T KOG0645|consen 110 CVAWSASGNYLATCSRD-----KSVWIWEID 135 (312)
T ss_pred EEEEcCCCCEEEEeeCC-----CeEEEEEec
Confidence 22223344433333222 237777776
No 158
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.58 E-value=39 Score=17.47 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=17.5
Q ss_pred cCCEEEEEcCCceeeeecCCCCc
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA 134 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~ 134 (316)
.++.+|+....+.++.+|+.+++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCc
Confidence 35677776666789999998875
No 159
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=46.89 E-value=39 Score=18.59 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=17.7
Q ss_pred CCEEEEEecccceEEEeeCCCCC
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+..+|+.....+.|.++|+.+..
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCe
Confidence 46788887767788999997654
No 160
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.94 E-value=63 Score=28.82 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=55.7
Q ss_pred CEEEEEc-CCceeeeecCCCCce-eecCCCCCCCCCCEEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAW-HHVDAPRVWRTDPVVALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+++|++. +.+.+.+.|..|++- ..++-... .++...+ +..+|+.+. ...+.++|..+++ .+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~--~v~~ 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGK--VVAT 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSS--EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcC-------CCeEEEEECCccc--EEEE
Confidence 4555544 568999999998764 44532211 1222222 356888753 1358899999877 3333
Q ss_pred CCcccccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++. ..... ++++ .|..+|+.....+.+..+|.++.+
T Consensus 74 i~~--G~~~~----~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 74 IKV--GGNPR----GIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EE---SSEEE----EEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred Eec--CCCcc----eEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 333 22222 4444 455677776667788999987654
No 161
>PTZ00420 coronin; Provisional
Probab=43.99 E-value=3e+02 Score=26.34 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..+.++|..+++ .+..+.. ... ..++..+ +|.+.+.++..+.|..||+.+++
T Consensus 148 gtIrIWDl~tg~--~~~~i~~--~~~----V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 148 SFVNIWDIENEK--RAFQINM--PKK----LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CeEEEEECCCCc--EEEEEec--CCc----EEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 458888887764 1111111 111 1133333 46666666666789999998765
No 162
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=43.90 E-value=1.3e+02 Score=27.53 Aligned_cols=51 Identities=6% Similarity=0.080 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCCeeec---CCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 171 LAVEMYSVDTRTWEIC---QSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~---~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..+...|.+|++=... ..+|. .... -..+..++++|+..+.|..||+.+++
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~~--cvkf-------~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVPT--CVKF-------HPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred eeeeeeccccceEEEEEecCCCce--eeec-------CCCCCcEEEEecCCCcEEEEeccchH
Confidence 4467778887764332 12222 1110 11245789999988899999999887
No 163
>PTZ00421 coronin; Provisional
Probab=43.84 E-value=2.8e+02 Score=25.96 Aligned_cols=59 Identities=3% Similarity=-0.052 Sum_probs=31.0
Q ss_pred EEEEcC-CceeeeecCCCCceee-cCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCC
Q 040781 116 LYTLSP-SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRT 182 (316)
Q Consensus 116 l~~~gg-~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~ 182 (316)
+++.++ .+.+.+||..+++-.. +.... . .-..+.. .++.+++.|+. ...+.+||.++++
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-~-~V~sla~spdG~lLatgs~------Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIKCHS-D-QITSLEWNLDGSLLCTTSK------DKKLNIIDPRDGT 201 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcCCC-C-ceEEEEEECCCCEEEEecC------CCEEEEEECCCCc
Confidence 344443 4689999998875422 21100 0 0011222 24555666653 2458899998765
No 164
>PTZ00421 coronin; Provisional
Probab=42.65 E-value=2.9e+02 Score=25.84 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=34.7
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+++.|+. ...+.++|..+++=.. .+.. +.. ...+++.+ ++.+.+.++..+.|..||+.++.
T Consensus 139 ~iLaSgs~------DgtVrIWDl~tg~~~~--~l~~---h~~--~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 139 NVLASAGA------DMVVNVWDVERGKAVE--VIKC---HSD--QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEeC------CCEEEEEECCCCeEEE--EEcC---CCC--ceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 45555543 2458899988764211 1110 000 01134443 46666777777889999998765
No 165
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=42.40 E-value=2.9e+02 Score=25.84 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=39.6
Q ss_pred EEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCC--CCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeec
Q 040781 204 VAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLR--QFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNI 280 (316)
Q Consensus 204 ~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~--~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~ 280 (316)
|+.+ ++.+...|...+.|..||..+.. .-+.+. .......-..+.....+|+.++-.+..+. +++|.|..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~--v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-----LKvWDLrq 395 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRT--VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-----LKVWDLRQ 395 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcc--cccceEeeeccCCCCceeEEEeccccchhhhccCCCc-----eeeeeccc
Confidence 3344 35554445467789999974333 222222 11100111112233456666665554443 99999983
Q ss_pred cCCchhhhhhc
Q 040781 281 KGGSLEELKEI 291 (316)
Q Consensus 281 ~~~~~~~W~~i 291 (316)
...-...|+-+
T Consensus 396 ~kkpL~~~tgL 406 (641)
T KOG0772|consen 396 FKKPLNVRTGL 406 (641)
T ss_pred cccchhhhcCC
Confidence 22233445543
No 166
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=41.67 E-value=83 Score=27.30 Aligned_cols=132 Identities=11% Similarity=0.195 Sum_probs=59.8
Q ss_pred EEEECCEEEEEcCcCCC--CCCCcEEEEEeCC--CCCeeecCCCCcccc--------cCccccceeEEEeCCEEEE-Eec
Q 040781 150 VALVGDKVVVAGGACDF--EDDPLAVEMYSVD--TRTWEICQSMPAVLK--------DSAASTWLSVAVNSRQLYV-TEK 216 (316)
Q Consensus 150 ~~~~~~~v~~~gg~~~~--~~~~~~v~vy~~~--t~~W~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~y~-~~~ 216 (316)
..+.+.+||++-|.... ......+.++.+. ..+|.....++.... ...+ ++...+|.+.+ +.+
T Consensus 65 tvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGS----GV~m~dGTLVFPv~a 140 (310)
T PF13859_consen 65 TVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGS----GVVMEDGTLVFPVQA 140 (310)
T ss_dssp EEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-----EE-TTS-EEEEEEE
T ss_pred eeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCC----ceEEcCCCEEEEEee
Confidence 34457777766543221 1123334444332 225887755544211 1222 45555666543 222
Q ss_pred -----c-cceEEEeeCC-CCCccCCCcCCCCCcccceeeeeeEee-CCEEEEEecCCCCCCcceeeEEEeeccCCchhhh
Q 040781 217 -----Y-SGITVSFDPS-TKGWSGPFHLRQFDHEKKVFYSVITFA-NDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEEL 288 (316)
Q Consensus 217 -----~-~~~i~~yD~~-~~~W~~~~~l~~~~~~~~~~~~~l~~~-~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W 288 (316)
. .-.+..|-.. ...|.--..+++. .-....++++ +|+|+|+..|... .-.+|+-. +.+.. |
T Consensus 141 ~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~----gC~~psv~EWe~gkLlM~~~c~~g----~rrVYeS~--DmG~t-W 209 (310)
T PF13859_consen 141 TKKNGDGTVSLIIYSTDDGKTWKLSKGMSPA----GCSDPSVVEWEDGKLLMMTACDDG----RRRVYESG--DMGTT-W 209 (310)
T ss_dssp EETT---EEEEEEEESSTTSS-EE-S----T----T-EEEEEEEE-TTEEEEEEE-TTS-------EEEES--STTSS--
T ss_pred eccCccceEEEEEEECCCccceEeccccCCC----CcceEEEEeccCCeeEEEEecccc----eEEEEEEc--cccee-h
Confidence 1 1235667665 6788754445544 2245678888 8899999876553 24567776 54433 9
Q ss_pred hh-cCCCcH
Q 040781 289 KE-IGEMPK 296 (316)
Q Consensus 289 ~~-i~~~p~ 296 (316)
++ ++.+|+
T Consensus 210 tea~gtlsr 218 (310)
T PF13859_consen 210 TEALGTLSR 218 (310)
T ss_dssp EE-TTTTTT
T ss_pred hhccCccce
Confidence 87 667664
No 167
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=41.42 E-value=2.6e+02 Score=25.04 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred cCCEEEEEcC----CceeeeecCCCC---cee-ecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCe
Q 040781 112 HSTLLYTLSP----SKLSFSFDPLHL---AWH-HVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTW 183 (316)
Q Consensus 112 ~~~~l~~~gg----~~~~~v~np~t~---~w~-~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W 183 (316)
.++.+|+... ...++.++.... .|. .+++.........+...+.++++..-.+ ....+.+|+.. ..|
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~-~~~ 360 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD-DGK 360 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT--TE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC-CCc
Confidence 4677777542 256777765554 365 5543332223334555677777665221 34678999998 334
Q ss_pred eec-CCCCcccccCccccceeEE--EeCCEEEEE-ec--ccceEEEeeCCCCCcc
Q 040781 184 EIC-QSMPAVLKDSAASTWLSVA--VNSRQLYVT-EK--YSGITVSFDPSTKGWS 232 (316)
Q Consensus 184 ~~~-~~~p~~~~~~~~~~~~~~~--~~~~~~y~~-~~--~~~~i~~yD~~~~~W~ 232 (316)
... .++|. ..... +.. ..++.+++. .+ ....++.||+.+++-.
T Consensus 361 ~~~~~~~p~--~g~v~----~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLPE--AGSVS----GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESSS--SSEEE----EEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCCc--ceEEe----ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 433 33333 11101 111 113445443 33 3457899999998843
No 168
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=41.09 E-value=2.3e+02 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCeeec-CCCCcccccCccccceeEEE-eCCEEEEEecccceEEEeeCCCCC
Q 040781 170 PLAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAV-NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 170 ~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...+..||.++++=-.+ ..-+. ...-. ++++ ..|++.+.|.....+.+||.-+.+
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~-~~git-----Sv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSI-ICGIT-----SVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcc-cCCce-----eEEEcccccEEEeeecCCceeEeeccccc
Confidence 34577788877652222 21111 01111 2332 357777776655567888876654
No 169
>PRK13684 Ycf48-like protein; Provisional
Probab=40.91 E-value=2.5e+02 Score=24.59 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=58.5
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
+.+++.+..+.++.=+-.=+.|..+...... ....+... +..++++|... ......+....+|..+... .
T Consensus 143 ~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~~-~- 213 (334)
T PRK13684 143 GTAEMATNVGAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQRN-S- 213 (334)
T ss_pred CcceeeeccceEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeCC-C-
Confidence 3345555444555544445678877432211 11122222 23444444211 1111123344579887432 1
Q ss_pred cccCccccceeEEE-eCCEEEEEecccceEEEe--eCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEecC
Q 040781 193 LKDSAASTWLSVAV-NSRQLYVTEKYSGITVSF--DPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVGLT 264 (316)
Q Consensus 193 ~~~~~~~~~~~~~~-~~~~~y~~~~~~~~i~~y--D~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g~~ 264 (316)
...-. ++.+ .++.+|+++.. +. ..+ +-.-++|+.+. .|... .......+ ...++.++++|..
T Consensus 214 -~~~l~----~i~~~~~g~~~~vg~~-G~-~~~~s~d~G~sW~~~~-~~~~~--~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 214 -SRRLQ----SMGFQPDGNLWMLARG-GQ-IRFNDPDDLESWSKPI-IPEIT--NGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred -cccce----eeeEcCCCCEEEEecC-CE-EEEccCCCCCcccccc-CCccc--cccceeeEEEcCCCCEEEEcCC
Confidence 11111 2322 46778888754 34 334 23345898765 33220 11111122 2336678888753
No 170
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=40.88 E-value=67 Score=23.93 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=26.0
Q ss_pred EEEEecccceEEEeeCCCCCccCCCc-CCCCCcccceeeeeeEeeCCEEEEEecC
Q 040781 211 LYVTEKYSGITVSFDPSTKGWSGPFH-LRQFDHEKKVFYSVITFANDRLIAVGLT 264 (316)
Q Consensus 211 ~y~~~~~~~~i~~yD~~~~~W~~~~~-l~~~~~~~~~~~~~l~~~~g~L~v~g~~ 264 (316)
+.++|.. ..+++||.++++ ..+.. ++.. ........+....+.|.++||.
T Consensus 66 ~LliGt~-t~llaYDV~~N~-d~Fyke~~DG--vn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 66 CLLIGTQ-TSLLAYDVENNS-DLFYKEVPDG--VNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred EEEEecc-ceEEEEEcccCc-hhhhhhCccc--eeEEEEEecCCCCCcEEEECce
Confidence 3444433 367999999887 22221 2222 1122223333445678888863
No 171
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.94 E-value=1.3e+02 Score=24.94 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=25.5
Q ss_pred eEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCC
Q 040781 203 SVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF 240 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~ 240 (316)
|.+++ .|.+|+..-..+.|..+|+.+++--.-..+|.+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence 33444 578898876777899999999983222225555
No 172
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.80 E-value=3.4e+02 Score=25.59 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=37.3
Q ss_pred CEEEEEcC-cCCCCCCCcEEEEEeCCCCCeeecC--CCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 155 DKVVVAGG-ACDFEDDPLAVEMYSVDTRTWEICQ--SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 155 ~~v~~~gg-~~~~~~~~~~v~vy~~~t~~W~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++|+.+.- .+..+......-+|+...++=+.+. .+|- +.... .++.+ .....++|-..+.|..||..++.
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL--~s~v~----~ca~sp~E~kLvlGC~DgSiiLyD~~~~~ 292 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPL--PSQVI----CCARSPSEDKLVLGCEDGSIILYDTTRGV 292 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEec--CCcce----EEecCcccceEEEEecCCeEEEEEcCCCe
Confidence 55666652 2222233444556777666555442 2322 21111 22222 34567777777899999998775
No 173
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=38.80 E-value=2.6e+02 Score=24.23 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=31.6
Q ss_pred eEEEe-CCEEEEEecc-cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeE-eeCCEEEEEecCC
Q 040781 203 SVAVN-SRQLYVTEKY-SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVIT-FANDRLIAVGLTG 265 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~-~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~-~~~g~L~v~g~~~ 265 (316)
+.++. +|.+|+.... .+.|.+|+++.+.-.++. +|.+ ...++..+ ...+.|++.....
T Consensus 217 G~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~-lP~~----~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 217 GMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIK-LPVK----RPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEEeCCCCEEEecccCCceEEEECCCCcEEEEEE-CCCC----CCccceEeCCCcCEEEEEecCC
Confidence 55555 5777854433 348999999955433333 5533 11222222 2347788877543
No 174
>PRK05137 tolB translocation protein TolB; Provisional
Probab=38.79 E-value=3e+02 Score=24.98 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=54.6
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~ 200 (316)
+...++++|..+++.+.+...+.....+....-+.+++...... ....+.++|..++.-+.+...+. .....
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~Lt~~~~--~~~~~-- 295 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTDSPA--IDTSP-- 295 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC----CCceEEEEECCCCceEEccCCCC--ccCce--
Confidence 34689999999998877754333222223322244554433211 23457778988887766643221 11111
Q ss_pred ceeEEEeCCEEEEEecc--cceEEEeeCCCCCccCC
Q 040781 201 WLSVAVNSRQLYVTEKY--SGITVSFDPSTKGWSGP 234 (316)
Q Consensus 201 ~~~~~~~~~~~y~~~~~--~~~i~~yD~~~~~W~~~ 234 (316)
...-+|..+++.... ...|+.+|..++..+.+
T Consensus 296 --~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 296 --SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred --eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 111234455554322 23578888877664443
No 175
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.44 E-value=3.1e+02 Score=24.96 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred EEEcCC-ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC-----CCCeeecCC
Q 040781 117 YTLSPS-KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD-----TRTWEICQS 188 (316)
Q Consensus 117 ~~~gg~-~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~-----t~~W~~~~~ 188 (316)
+..|+. +++.+||-.|++....=.- ....-+.+..+ ...+.+-|+++ ..|.++|.+ ...|+.-..
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D------~~V~l~D~R~~~~s~~~wk~~g~ 331 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYD------GTVALKDCRDPSNSGKEWKFDGE 331 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEecccc------ceEEeeeccCccccCceEEeccc
Confidence 345543 7899999999887654111 11111223322 24566666643 346667765 345766533
Q ss_pred CCc-ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPA-VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.-. .+... .-..++++...|.+..||..+..
T Consensus 332 VEkv~w~~~-----------se~~f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 332 VEKVAWDPH-----------SENSFFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred eEEEEecCC-----------CceeEEEecCCceEEeeecCCCC
Confidence 211 01111 12344444455667777776553
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.33 E-value=2.4e+02 Score=23.64 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=52.7
Q ss_pred ceeeeecCCCCceeecCCCC---CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec--CCCCcccccCc
Q 040781 123 KLSFSFDPLHLAWHHVDAPR---VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC--QSMPAVLKDSA 197 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~---~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~--~~~p~~~~~~~ 197 (316)
+.+.+|+-..++|.++..-. ..-..-+.+..+|-+.++.+..+.. ..+.-|+.. +.|..- ..... +. ..
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~---vsvl~~~~~-g~w~t~ki~~aH~-~G-vn 153 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK---VSVLTYDSS-GGWTTSKIVFAHE-IG-VN 153 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCc---EEEEEEcCC-CCccchhhhhccc-cc-cc
Confidence 67899988888998773111 1111112223455555555433322 334445544 577543 11100 00 00
Q ss_pred cccce-----eEEEe-----CCEEEEEecccceEEEeeCCCCCccCCCcCC
Q 040781 198 ASTWL-----SVAVN-----SRQLYVTEKYSGITVSFDPSTKGWSGPFHLR 238 (316)
Q Consensus 198 ~~~~~-----~~~~~-----~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~ 238 (316)
+..|. +..+. ..+=++.||..+.|-.++..+++|..-..|.
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence 10111 11111 1133666777777777888787887544343
No 177
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=37.69 E-value=3.4e+02 Score=25.18 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=53.8
Q ss_pred ceEEeeCCCCceeEccC-CCCCCc--cce----------eeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC
Q 040781 82 TAHAYDARSHVWIEIKN-NQPSSF--DFL----------LRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP 148 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~-~~~~~~--~~~----------~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~ 148 (316)
+.+.|||..++...+.. ||+... .+. -....|..+-+++ .+..++.+|-.+--.+++....-|...
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r 366 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRR 366 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEE
Confidence 37789999888776532 132200 000 1112334443333 357899998887777776544333221
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 149 VVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 149 ~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.. ....-.++|-. ....+.|||.+++.-+.++
T Consensus 367 ~~--~~~e~~vigt~-----dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 367 IQ--VDPEGDVIGTN-----DGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred Ec--cCCcceEEecc-----CCceEEEEecCCceEEEee
Confidence 11 22234444432 2346999999999887774
No 178
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=36.90 E-value=3e+02 Score=24.39 Aligned_cols=139 Identities=12% Similarity=0.205 Sum_probs=70.4
Q ss_pred CEEEEEcC-CceeeeecCCCCceeecCCCCCCCCCCEEE--EECCEEEEEcCcCCCCCCCcEEEEEeCCCC--CeeecCC
Q 040781 114 TLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVA--LVGDKVVVAGGACDFEDDPLAVEMYSVDTR--TWEICQS 188 (316)
Q Consensus 114 ~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~--~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~~~~ 188 (316)
.-+++.|| .+.-|+|+-.++.|--. +......-..+ .+++.+++-|+.++ .+.++...++ +|.....
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~~~~~~~e 147 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGEQWKLDQE 147 (399)
T ss_pred CceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCceEEEeecc
Confidence 44456664 57789999999985321 12222111111 23566667676543 3666666554 5765422
Q ss_pred CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEA 267 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~ 267 (316)
+.. ..|+ .-+ .+.+.++|...+.++.|.+.++. ....++.+. .+..+..+ .-+|+..+.+....
T Consensus 148 ~~d-------ieWl--~WHp~a~illAG~~DGsvWmw~ip~~~--~~kv~~Gh~--~~ct~G~f-~pdGKr~~tgy~dg- 212 (399)
T KOG0296|consen 148 VED-------IEWL--KWHPRAHILLAGSTDGSVWMWQIPSQA--LCKVMSGHN--SPCTCGEF-IPDGKRILTGYDDG- 212 (399)
T ss_pred cCc-------eEEE--EecccccEEEeecCCCcEEEEECCCcc--eeeEecCCC--CCcccccc-cCCCceEEEEecCc-
Confidence 211 0111 011 14566677777888999888763 122222221 11111222 23466666664322
Q ss_pred CCcceeeEEEee
Q 040781 268 EDVKSLKIWQVN 279 (316)
Q Consensus 268 ~~~~~~~iw~l~ 279 (316)
.+.+|.+.
T Consensus 213 ----ti~~Wn~k 220 (399)
T KOG0296|consen 213 ----TIIVWNPK 220 (399)
T ss_pred ----eEEEEecC
Confidence 38888886
No 179
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=36.85 E-value=2.8e+02 Score=24.00 Aligned_cols=130 Identities=11% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCC-CCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCC--CCCeeecCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDA-PRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVD--TRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~-~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~--t~~W~~~~~ 188 (316)
+...+++|....++.-.=.=..|.+++. .+.+.....+.. -...+.+++.. -.+|-+. ..+|+.+..
T Consensus 71 ~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~---------G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 71 GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR---------GAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT-----------EEEESSTTSSEEEEE-
T ss_pred CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC---------CcEEEeCCCCCCeeEccc
Confidence 4556677644343433334467998852 222222222322 34556665521 2244443 458998743
Q ss_pred CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEe
Q 040781 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVG 262 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g 262 (316)
-.. ..-.. .....+|.+..++...+.....|+....|..... +-. .++.. .-...++.|+++.
T Consensus 142 ~~~--gs~~~----~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-~~~---~riq~-~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 142 ETS--GSIND----ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-NSS---RRIQS-MGFSPDGNLWMLA 204 (302)
T ss_dssp S------EEE----EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SS---S-EEE-EEE-TTS-EEEEE
T ss_pred CCc--ceeEe----EEECCCCcEEEEECcccEEEEecCCCccceEEcc-Ccc---ceehh-ceecCCCCEEEEe
Confidence 212 11111 2334567777777666677789999889986652 222 12221 1123456777766
No 180
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=35.85 E-value=1.7e+02 Score=21.23 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=43.9
Q ss_pred CCEEEEEcC-----CceeeeecCCCCceeecCCC---CCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEE-eCCCCCe
Q 040781 113 STLLYTLSP-----SKLSFSFDPLHLAWHHVDAP---RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMY-SVDTRTW 183 (316)
Q Consensus 113 ~~~l~~~gg-----~~~~~v~np~t~~w~~lp~~---~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy-~~~t~~W 183 (316)
+|.+|-.+. ...+..||-.+.+|+.++.| ........+..+++++-++............+.+. |...++|
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~W 84 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEW 84 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceE
Confidence 455554331 36788899999999988643 22333445666778877765322211122345544 4557889
Q ss_pred eec
Q 040781 184 EIC 186 (316)
Q Consensus 184 ~~~ 186 (316)
.+.
T Consensus 85 sk~ 87 (129)
T PF08268_consen 85 SKK 87 (129)
T ss_pred EEE
Confidence 876
No 181
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.85 E-value=4.3e+02 Score=25.90 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=33.0
Q ss_pred EEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 210 QLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 210 ~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.+.|.. ....|..||..... .+..++...+......+.+.. +|+-+|.+..+. .+.||.++
T Consensus 516 ~vLVTS-nDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs-----~VYiW~~~ 576 (712)
T KOG0283|consen 516 EVLVTS-NDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASFSS-DGKHIVSASEDS-----WVYIWKND 576 (712)
T ss_pred eEEEec-CCCceEEEeccchh--hhhhhcccccCCcceeeeEcc-CCCEEEEeecCc-----eEEEEeCC
Confidence 344444 55678999986544 122233332222323344444 666666665333 39999986
No 182
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=35.84 E-value=1.8e+02 Score=26.95 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=37.4
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCC-ccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKG-WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~-W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
++++.+-.=+|+.|..+.|-+||+..-. =..+..|+.-+.......|.| .-+|+-+++||... .+.||.|.
T Consensus 424 AvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL-~pdgrtLivGGeas-----tlsiWDLA 495 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL-LPDGRTLIVGGEAS-----TLSIWDLA 495 (705)
T ss_pred EEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEe-cCCCceEEeccccc-----eeeeeecc
Confidence 3444444444444444578899986432 012233333211222233344 45777777886533 49999998
No 183
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=35.57 E-value=3.2e+02 Score=24.35 Aligned_cols=103 Identities=13% Similarity=0.039 Sum_probs=53.4
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
...++++|..+++...+..............-+.+++...... ....+.++|..++..+.+..... .....
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~~--~~~~~--- 283 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGPG--IDTEP--- 283 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCCC--CCCCE---
Confidence 3689999999987766543332222222211234555443211 22457888988887766643211 11111
Q ss_pred eeEEEeCCEEEEEecc--cceEEEeeCCCCCccCC
Q 040781 202 LSVAVNSRQLYVTEKY--SGITVSFDPSTKGWSGP 234 (316)
Q Consensus 202 ~~~~~~~~~~y~~~~~--~~~i~~yD~~~~~W~~~ 234 (316)
....++..+++.... ...|+.+|+.+..+..+
T Consensus 284 -~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 284 -SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 111234556554432 22578889887775443
No 184
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=2.5e+02 Score=22.97 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=30.6
Q ss_pred CEEEEEecccceEEEeeCCCCC---ccCCCcCCCC-Cccc---ce-eeeeeEeeCCEEEEEec
Q 040781 209 RQLYVTEKYSGITVSFDPSTKG---WSGPFHLRQF-DHEK---KV-FYSVITFANDRLIAVGL 263 (316)
Q Consensus 209 ~~~y~~~~~~~~i~~yD~~~~~---W~~~~~l~~~-~~~~---~~-~~~~l~~~~g~L~v~g~ 263 (316)
|.+|..--.+..|..-||+++. |.++..+++. +... .. ...+-...++++++.|-
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 4444433356688999999885 7777766653 1000 01 11111234678888873
No 185
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.59 E-value=3.3e+02 Score=24.17 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=34.8
Q ss_pred eCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 207 NSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 207 ~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+++.+...+...+.|-.+|+.+.. - +..|... ...-...+..-+|+.++--.. .+.+.+|.++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~-c-L~tL~gh---dnwVr~~af~p~Gkyi~ScaD-----Dktlrvwdl~ 364 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGM-C-LFTLVGH---DNWVRGVAFSPGGKYILSCAD-----DKTLRVWDLK 364 (406)
T ss_pred CCccEEEeecccceEEEEeccCCe-E-EEEEecc---cceeeeeEEcCCCeEEEEEec-----CCcEEEEEec
Confidence 355677777788889999998874 1 1112222 122223333445654433322 2349999998
No 186
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.47 E-value=3.7e+02 Score=24.71 Aligned_cols=143 Identities=9% Similarity=0.074 Sum_probs=68.4
Q ss_pred EEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCee---ecCCCCc
Q 040781 117 YTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE---ICQSMPA 191 (316)
Q Consensus 117 ~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~---~~~~~p~ 191 (316)
++.| ..+.+.+||..+++....=........ ++++ -++.+++.+.. ...+.+||..+++=. .+.....
T Consensus 261 i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is-~~~f~~d~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 261 LVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS-GLAFSPDGNLLVSASY------DGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred EEEecCCCcEEEEeccCCeEEEeeeccCCceE-EEEECCCCCEEEEcCC------CccEEEEECCCCceeeeecccCCCC
Confidence 3444 447899999998666443111111111 1111 23455555543 245889999887632 2221111
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
..... .+... ++.+.+.+...+.+..||+.+..-.. . .........-........++++.+.|.....
T Consensus 334 --~~~~~----~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~--- 402 (456)
T KOG0266|consen 334 --SAPVT----SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG-T-YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS--- 402 (456)
T ss_pred --CCcee----EEEECCCCcEEEEecCCCeEEEEEccCCccee-e-ecccCCcceeEecccccCCCCeEEEEeCCce---
Confidence 10111 34443 44444444455577888888665111 1 1111000000111222446777777754433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
+.+|.+.
T Consensus 403 --v~~~~~~ 409 (456)
T KOG0266|consen 403 --VYVWDSS 409 (456)
T ss_pred --EEEEeCC
Confidence 8888887
No 187
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.29 E-value=2.5e+02 Score=27.47 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=48.1
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC---eeecCCCCcccccCcc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT---WEICQSMPAVLKDSAA 198 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~---W~~~~~~p~~~~~~~~ 198 (316)
.+++-+|+|.++++-.+=.-+-.-...++--.+++.++-|..+.. +.+.+....+ |..+..+-.
T Consensus 389 DKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K------vRiWsI~d~~Vv~W~Dl~~lIT------- 455 (712)
T KOG0283|consen 389 DKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK------VRLWSISDKKVVDWNDLRDLIT------- 455 (712)
T ss_pred cccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccc------eEEeecCcCeeEeehhhhhhhe-------
Confidence 377888888887765441111110000111245777777754332 3333222221 444433211
Q ss_pred ccceeEEEe-CCEEEEEecccceEEEeeCCCCCc
Q 040781 199 STWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 199 ~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
++|+. +|..-++|...|.+..|+.+..+.
T Consensus 456 ----Avcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 456 ----AVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred ----eEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 23333 577778888778888888876664
No 188
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=33.26 E-value=48 Score=23.57 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=28.4
Q ss_pred CCCCCcHHHHHHHHhcCChhhhHHHhhh--------hHHHHHHhh
Q 040781 17 NNSIVHGDILEAILSQVPLIDLASACYV--------SRSWNRAVF 53 (316)
Q Consensus 17 ~~~~Lp~dll~~IL~rLp~~~l~r~r~V--------cK~W~~li~ 53 (316)
++..+|.+++.-||.++.+..|.++-.- -..|+.++.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~tdeLW~~~i~ 47 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIEDTDELWKKLIK 47 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 4678999999999999998888776544 345555554
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=33.08 E-value=76 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeE---eeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVIT---FANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~---~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+|.+...-+..+.+-+||..+++-.-+. ..++...|. .-+|+.+++||.++. +.||.+.
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~m--------kSYFGGLLCvcWSPDGKyIvtGGEDDL-----VtVwSf~ 362 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVM--------KSYFGGLLCVCWSPDGKYIVTGGEDDL-----VTVWSFE 362 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHH--------HhhccceEEEEEcCCccEEEecCCcce-----EEEEEec
Confidence 4555555556778889998887621111 122222222 238999999987776 7788886
No 190
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=32.15 E-value=3.6e+02 Score=23.83 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=67.4
Q ss_pred eEEeeCCCCc--eeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCC-CCCCCEEEEECCEEEE
Q 040781 83 AHAYDARSHV--WIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVGDKVVV 159 (316)
Q Consensus 83 ~~~~d~~~~~--w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~v~~ 159 (316)
+.++|+...+ |..... .-............|.||+-...+.++++|+.+++-......+. ++........++.+|+
T Consensus 80 i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~ 158 (370)
T COG1520 80 IFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYV 158 (370)
T ss_pred EEEEeCCCCcEEecccCc-CcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEE
Confidence 6778887765 754421 10001111122225777776655689999997765332222222 1211122234455555
Q ss_pred EcCcCCCCCCCcEEEEEeCCCC--CeeecCC--CCcccccCccccceeEEEeCCEEEEEecc-cceEEEeeCCCCC--cc
Q 040781 160 AGGACDFEDDPLAVEMYSVDTR--TWEICQS--MPAVLKDSAASTWLSVAVNSRQLYVTEKY-SGITVSFDPSTKG--WS 232 (316)
Q Consensus 160 ~gg~~~~~~~~~~v~vy~~~t~--~W~~~~~--~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~i~~yD~~~~~--W~ 232 (316)
.. ....+...|..++ .|+.-.. ++. .... +....++.+|+.... .+.+.++|+++++ |.
T Consensus 159 ~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~--~~~~-----~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 159 GT-------DDGHLYALNADTGTLKWTYETPAPLSL--SIYG-----SPAIASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ec-------CCCeEEEEEccCCcEEEEEecCCcccc--cccc-----CceeecceEEEecCCCcceEEEEEccCCcEeee
Confidence 42 1133555565544 5875422 222 2222 222566777776532 3368999997664 65
No 191
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.96 E-value=4.7e+02 Score=25.56 Aligned_cols=62 Identities=13% Similarity=0.292 Sum_probs=37.2
Q ss_pred CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.|.+...|+..+.|..||+.+.+ . +..+... ....+..-...+|.++++|+-+.. +.+|.+.
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~-~-v~~l~~H---t~ti~SlsFS~dg~vLasgg~Dns-----V~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGS-L-VKQLKGH---TGTIYSLSFSRDGNVLASGGADNS-----VRLWDLT 649 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCc-c-hhhhhcc---cCceeEEEEecCCCEEEecCCCCe-----EEEEEch
Confidence 46666666677889999999866 1 2212222 111111222447778788765554 9999886
No 192
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=30.06 E-value=1.1e+02 Score=17.44 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=20.0
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCC
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.+.+.|+..|+..+.. .+..+|+.+-
T Consensus 6 ~v~v~g~yaYva~~~~-Gl~IvDISnP 31 (42)
T PF08309_consen 6 DVAVSGNYAYVADGNN-GLVIVDISNP 31 (42)
T ss_pred EEEEECCEEEEEeCCC-CEEEEECCCC
Confidence 6788899999997654 4588998653
No 193
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=29.99 E-value=96 Score=26.17 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=23.7
Q ss_pred CCCCCCcHHHHHHHHhcCC-hhhhHHHhhhh
Q 040781 16 TNNSIVHGDILEAILSQVP-LIDLASACYVS 45 (316)
Q Consensus 16 ~~~~~Lp~dll~~IL~rLp-~~~l~r~r~Vc 45 (316)
....+||.+++.+||.||| -.||.....|-
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~ 230 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAW 230 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhh
Confidence 4578999999999999998 46666655553
No 194
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.06 E-value=3.5e+02 Score=22.15 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=45.1
Q ss_pred CCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEe
Q 040781 147 DPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSF 224 (316)
Q Consensus 147 ~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~y 224 (316)
.+++...+++++.--|.. ..+.+.++|..+++ |+.--+ |. ..... |+...++.+|...-..+.-+.|
T Consensus 48 TQGL~~~~g~i~esTG~y----g~S~ir~~~L~~gq~~~s~~l~-~~--~~FgE----Git~~gd~~y~LTw~egvaf~~ 116 (262)
T COG3823 48 TQGLEYLDGHILESTGLY----GFSKIRVSDLTTGQEIFSEKLA-PD--TVFGE----GITKLGDYFYQLTWKEGVAFKY 116 (262)
T ss_pred hcceeeeCCEEEEecccc----ccceeEEEeccCceEEEEeecC-Cc--ccccc----ceeeccceEEEEEeccceeEEE
Confidence 345555677766655543 33668899998775 443212 22 23334 7788899999988666666778
Q ss_pred eCCC
Q 040781 225 DPST 228 (316)
Q Consensus 225 D~~~ 228 (316)
|..+
T Consensus 117 d~~t 120 (262)
T COG3823 117 DADT 120 (262)
T ss_pred ChHH
Confidence 7754
No 195
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=27.03 E-value=4.1e+02 Score=22.94 Aligned_cols=26 Identities=12% Similarity=-0.130 Sum_probs=17.1
Q ss_pred cCCEEEEEcCC-ceeeeecCCCCceee
Q 040781 112 HSTLLYTLSPS-KLSFSFDPLHLAWHH 137 (316)
Q Consensus 112 ~~~~l~~~gg~-~~~~v~np~t~~w~~ 137 (316)
-.+..++.+.. +++..||-.+...+-
T Consensus 110 P~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 110 PKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred CCCCeEEecccCCeEEeeEecCCCCce
Confidence 34565666654 588889887766544
No 196
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=26.92 E-value=4.8e+02 Score=23.67 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=53.2
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCc
Q 040781 153 VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 153 ~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
.++.+..-||.+.. ..|.|.+|+.=..+- . .+ .-..+++.+. +|+....|+..+.+-+||+....
T Consensus 313 ~DGSL~~tGGlD~~------~RvWDlRtgr~im~L---~--gH--~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~- 378 (459)
T KOG0272|consen 313 PDGSLAATGGLDSL------GRVWDLRTGRCIMFL---A--GH--IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS- 378 (459)
T ss_pred CCCceeeccCccch------hheeecccCcEEEEe---c--cc--ccceeeEeECCCceEEeecCCCCcEEEeeecccc-
Confidence 35677787875433 234555555422210 0 11 1111244444 57777778888888999998665
Q ss_pred cCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 232 SGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
++..+|...+.. .........|+.++..+++.. ++||.-+
T Consensus 379 -~ly~ipAH~nlV--S~Vk~~p~~g~fL~TasyD~t-----~kiWs~~ 418 (459)
T KOG0272|consen 379 -ELYTIPAHSNLV--SQVKYSPQEGYFLVTASYDNT-----VKIWSTR 418 (459)
T ss_pred -cceecccccchh--hheEecccCCeEEEEcccCcc-----eeeecCC
Confidence 244455441111 100111124555555554443 7778665
No 197
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.83 E-value=4.9e+02 Score=23.69 Aligned_cols=140 Identities=9% Similarity=-0.018 Sum_probs=72.7
Q ss_pred ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEE-EEEc--CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLL-YTLS--PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKV 157 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l-~~~g--g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v 157 (316)
.++.+|...++-..+. ..........-+ .|..| +... |..+++++|..++++++|-..+.....+....-+.+|
T Consensus 214 ~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I 291 (419)
T PRK04043 214 TLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRI 291 (419)
T ss_pred EEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEE
Confidence 3566776665554442 111111112222 34344 3332 4578999999999988885433222222332234566
Q ss_pred EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc--------cceEEEeeCCCC
Q 040781 158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY--------SGITVSFDPSTK 229 (316)
Q Consensus 158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~--------~~~i~~yD~~~~ 229 (316)
+...... ....+.++|..+++.+.+..... ... ...-.|..+.+.... ...|..+|++++
T Consensus 292 ~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~----~~~----~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 292 VFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK----NNS----SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred EEEECCC----CCceEEEEECCCCCeEeCccCCC----cCc----eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 6554221 23468888998888866632111 111 222244555443321 136889999888
Q ss_pred CccCCC
Q 040781 230 GWSGPF 235 (316)
Q Consensus 230 ~W~~~~ 235 (316)
.++.+.
T Consensus 360 ~~~~LT 365 (419)
T PRK04043 360 YIRRLT 365 (419)
T ss_pred CeEECC
Confidence 876655
No 198
>PF15408 PH_7: Pleckstrin homology domain
Probab=26.12 E-value=67 Score=21.69 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=19.9
Q ss_pred hhhhHHHhhhhHHHHHHhhccccccC
Q 040781 35 LIDLASACYVSRSWNRAVFSSLRRVN 60 (316)
Q Consensus 35 ~~~l~r~r~VcK~W~~li~s~~~~~~ 60 (316)
++-...-+-|||.|-++..++.++..
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~~ 101 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRVS 101 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhhc
Confidence 45566778899999999988855543
No 199
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=26.11 E-value=2.3e+02 Score=24.63 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=34.5
Q ss_pred CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEe
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQV 278 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l 278 (316)
+|.+.++|.....+..||+.+-+ --++..|.. +...-....--...|+||+.+..+.. |+||.=
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Q-cfvsanPd~-qht~ai~~V~Ys~t~~lYvTaSkDG~-----IklwDG 290 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQ-CFVSANPDD-QHTGAITQVRYSSTGSLYVTASKDGA-----IKLWDG 290 (430)
T ss_pred CCceEEEecCCCceeEEecccee-EeeecCccc-ccccceeEEEecCCccEEEEeccCCc-----EEeecc
Confidence 35555666655678899998765 112212222 11111111112457899999865544 777843
No 200
>PF13919 ASXH: Asx homology domain
Probab=25.72 E-value=74 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCCCCcHHHHHHHHhcCChhhhH--------------------HHhhhhHHHHHHhhcc
Q 040781 17 NNSIVHGDILEAILSQVPLIDLA--------------------SACYVSRSWNRAVFSS 55 (316)
Q Consensus 17 ~~~~Lp~dll~~IL~rLp~~~l~--------------------r~r~VcK~W~~li~s~ 55 (316)
.|..||.+-..+||..||..+.. .||.-|..|+..+...
T Consensus 43 tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G 101 (138)
T PF13919_consen 43 TWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEG 101 (138)
T ss_pred HHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcC
Confidence 37789999999999999965441 3778888888888765
No 201
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.43 E-value=2.8e+02 Score=25.36 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=22.1
Q ss_pred EEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 204 VAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 204 ~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++..+|++.+.|+..+.|..||..+.+
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccc
Confidence 344578899999988888999998876
No 202
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.23 E-value=2e+02 Score=25.32 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=38.3
Q ss_pred CCEEEEEc--C-cCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCC---EEEEEecccceEEEeeCC
Q 040781 154 GDKVVVAG--G-ACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSR---QLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 154 ~~~v~~~g--g-~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~i~~yD~~ 227 (316)
..++|+.- | ...++.....+++||..+++= +..++- ..... ++.+..+ .+|.+....+.+.+||..
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l--~~~~~----Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPL--EHPID----SIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEE--EEEES----EEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeC--CCccc----eEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 35777764 2 222335667899999999762 222221 11111 3444422 577776666789999999
Q ss_pred CCC
Q 040781 228 TKG 230 (316)
Q Consensus 228 ~~~ 230 (316)
+++
T Consensus 321 tGk 323 (342)
T PF06433_consen 321 TGK 323 (342)
T ss_dssp T--
T ss_pred CCc
Confidence 886
No 203
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.17 E-value=5.2e+02 Score=23.49 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=68.8
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCC---CCeeecCCCCcccccCc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDT---RTWEICQSMPAVLKDSA 197 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t---~~W~~~~~~p~~~~~~~ 197 (316)
...+..||..|+....+-+-...-.....+. -++.=++.|+.+ ..+-..|... +.|+.+.. |. ...
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~-~~---v~d 359 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD-PK---VHD 359 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc-ce---eEE
Confidence 4678889999998876633221111112221 233345566532 2244445443 46877642 11 111
Q ss_pred cccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEE
Q 040781 198 ASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQ 277 (316)
Q Consensus 198 ~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~ 277 (316)
- ++..+|..++.++. ...|..|+.++..=+.+-....| ....-...+|+++++..... ++.+|.
T Consensus 360 l----ait~Dgk~vl~v~~-d~~i~l~~~e~~~dr~lise~~~------its~~iS~d~k~~LvnL~~q-----ei~LWD 423 (519)
T KOG0293|consen 360 L----AITYDGKYVLLVTV-DKKIRLYNREARVDRGLISEEQP------ITSFSISKDGKLALVNLQDQ-----EIHLWD 423 (519)
T ss_pred E----EEcCCCcEEEEEec-ccceeeechhhhhhhccccccCc------eeEEEEcCCCcEEEEEcccC-----eeEEee
Confidence 1 34445566666664 34578888876551212212222 11222355789999986433 399999
Q ss_pred ee
Q 040781 278 VN 279 (316)
Q Consensus 278 l~ 279 (316)
++
T Consensus 424 l~ 425 (519)
T KOG0293|consen 424 LE 425 (519)
T ss_pred cc
Confidence 98
No 204
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=25.03 E-value=2e+02 Score=20.99 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=26.1
Q ss_pred eeEeeCCEEEEEecCCCC-----CCcceeeEEEeeccCCchhhhhhcC
Q 040781 250 VITFANDRLIAVGLTGEA-----EDVKSLKIWQVNIKGGSLEELKEIG 292 (316)
Q Consensus 250 ~l~~~~g~L~v~g~~~~~-----~~~~~~~iw~l~~~~~~~~~W~~i~ 292 (316)
.+...+|+|-++...... .....+..|.|.+.+.+..+|++-.
T Consensus 47 ~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~~~~W~~d~ 94 (131)
T PF07762_consen 47 DVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGSSWEWKKDC 94 (131)
T ss_pred eEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCCCCCEEEeE
Confidence 455678998777654432 2345699999993212344486543
No 205
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=25.01 E-value=1.8e+02 Score=25.22 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=36.0
Q ss_pred CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeE-eeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVIT-FANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~-~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.|.+..+|-..|.|+.||+.|.. +..+-.. -...-+.+. ..+|+.++...... .+.+|.+-
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~~---iar~lsa---H~~pi~sl~WS~dgr~LltsS~D~-----si~lwDl~ 95 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTFR---IARMLSA---HVRPITSLCWSRDGRKLLTSSRDW-----SIKLWDLL 95 (405)
T ss_pred CcceeeeeccCCcEEEEEccccc---hhhhhhc---cccceeEEEecCCCCEeeeecCCc-----eeEEEecc
Confidence 46666677677889999999876 3332221 000112232 34677777764433 38888886
No 206
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=24.12 E-value=87 Score=20.53 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=22.0
Q ss_pred CCEEEEEec--ccceEEEeeCCCCCccCCCcCCC
Q 040781 208 SRQLYVTEK--YSGITVSFDPSTKGWSGPFHLRQ 239 (316)
Q Consensus 208 ~~~~y~~~~--~~~~i~~yD~~~~~W~~~~~l~~ 239 (316)
.|.+|+++. .-..=..||+++++..++. ++.
T Consensus 16 SG~Yy~vd~P~Qp~~k~lfDPETGqYVeV~-iP~ 48 (75)
T PF15232_consen 16 SGQYYVVDAPVQPKTKTLFDPETGQYVEVL-IPS 48 (75)
T ss_pred CCCEEEEecCCCcceeeeecCCCCcEEEEe-CCC
Confidence 478888876 1123368999999988877 554
No 207
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=23.21 E-value=5e+02 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=20.0
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVD 139 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp 139 (316)
|.++|.-+..+.+-+||..+++-..+.
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred CceEEeeccCCceEEEEccCCCeeeee
Confidence 456655555588999999999877763
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=23.10 E-value=5.7e+02 Score=23.19 Aligned_cols=103 Identities=11% Similarity=0.028 Sum_probs=53.2
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
...++++|..+++.+.+...+..........-+.++++..... ....+.++|..+++-+.+..... .....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~----g~~~Iy~~d~~~g~~~~lt~~~~--~~~~~--- 297 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD----GNPEIYVMDLGSRQLTRLTNHFG--IDTEP--- 297 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC----CCceEEEEECCCCCeEECccCCC--Cccce---
Confidence 4579999999988776643332221222222244555443211 12468888998887665532211 11111
Q ss_pred eeEEEeCCEEEEEeccc--ceEEEeeCCCCCccCC
Q 040781 202 LSVAVNSRQLYVTEKYS--GITVSFDPSTKGWSGP 234 (316)
Q Consensus 202 ~~~~~~~~~~y~~~~~~--~~i~~yD~~~~~W~~~ 234 (316)
...-+|..+++..... ..|+.+|..+++.+.+
T Consensus 298 -~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 298 -TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 1112344555554322 2478888877765444
No 209
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=22.59 E-value=5.9e+02 Score=23.15 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhh
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEE 287 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~ 287 (316)
++.+...++..++|..||+.+-. ..+..+.... ..+....-.-....++...+... .+.||.+. .-+.++
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~--dev~~V~WSPh~etvLASSg~D~-----rl~vWDls--~ig~eq 353 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLN-KPLHTFEGHE--DEVFQVEWSPHNETVLASSGTDR-----RLNVWDLS--RIGEEQ 353 (422)
T ss_pred CCceEEeccCCCcEEEeechhcc-cCceeccCCC--cceEEEEeCCCCCceeEecccCC-----cEEEEecc--cccccc
Confidence 57777788878899999998766 3333233220 11111000011333444444333 38999997 332222
Q ss_pred -hhhcCCCcHHHHHHHhcCCcce
Q 040781 288 -LKEIGEMPKALLEKLKGNKRSA 309 (316)
Q Consensus 288 -W~~i~~~p~~~~~~~~~~~~~~ 309 (316)
|..-..-|.|++ |.-.++.+
T Consensus 354 ~~eda~dgppEll--F~HgGH~~ 374 (422)
T KOG0264|consen 354 SPEDAEDGPPELL--FIHGGHTA 374 (422)
T ss_pred ChhhhccCCccee--EEecCccc
Confidence 666667788866 44444443
No 210
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=22.27 E-value=6.2e+02 Score=23.28 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=16.3
Q ss_pred eeeeecCCEEEEEcCC-ceeeeecC
Q 040781 107 LLRSSHSTLLYTLSPS-KLSFSFDP 130 (316)
Q Consensus 107 ~~~~s~~~~l~~~gg~-~~~~v~np 130 (316)
..+.+..|..++.||. +.+++|..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEE
Confidence 3566677887777764 67777743
No 211
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.27 E-value=2.8e+02 Score=23.68 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=35.3
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeC-------CEEEEEecccceEEEeeCCCCC-ccCCC
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNS-------RQLYVTEKYSGITVSFDPSTKG-WSGPF 235 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~y~~~~~~~~i~~yD~~~~~-W~~~~ 235 (316)
..+-+||..|++=-..-.+|...... .+....+++.. +.+|+.......|.+||+.+++ |+...
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~-~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~ 105 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPP-DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLH 105 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-T-CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred cEEEEEECCCCcEEEEEECChHHccc-ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence 45667788887632222233311221 11122344554 5789998766689999999865 55444
No 212
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=22.05 E-value=4e+02 Score=21.01 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=52.0
Q ss_pred CEEEEEcCCceeeeecCCCCce---eecCC--CC--CCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAW---HHVDA--PR--VWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w---~~lp~--~~--~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
+.+|++.|. .++.||-.+... +.+.. .+ ....+.++... +.++|.+.| .....||..+++-..
T Consensus 63 ~~~yfFkg~-~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~ 133 (194)
T cd00094 63 GKIYFFKGD-KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDP 133 (194)
T ss_pred CEEEEECCC-EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccC
Confidence 788888764 788887654211 11111 11 12223333333 578898876 335567665444321
Q ss_pred c-C-CCCccc---ccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 186 C-Q-SMPAVL---KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~-~-~~p~~~---~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
- + .+...+ +.... .+....++.+|++.|. ..+.||..+++
T Consensus 134 ~yP~~i~~~w~g~p~~id---aa~~~~~~~~yfF~g~--~y~~~d~~~~~ 178 (194)
T cd00094 134 GYPKLIETDFPGVPDKVD---AAFRWLDGYYYFFKGD--QYWRFDPRSKE 178 (194)
T ss_pred CCCcchhhcCCCcCCCcc---eeEEeCCCcEEEEECC--EEEEEeCccce
Confidence 1 0 000000 11111 0333344788888775 67899988765
No 213
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=21.77 E-value=5e+02 Score=22.67 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=43.2
Q ss_pred cceeEEEe----CCEEEEEecccceEEEeeCCCCCccCCCcCC-------CCCcccceeeeeeEeeCCEEEEEecCCCCC
Q 040781 200 TWLSVAVN----SRQLYVTEKYSGITVSFDPSTKGWSGPFHLR-------QFDHEKKVFYSVITFANDRLIAVGLTGEAE 268 (316)
Q Consensus 200 ~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~-------~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~ 268 (316)
.+.++++. ++.+|...=+.+.|.+||- +|..+. ++ .| ..+.--.+...+++|||.-...+..
T Consensus 139 vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~---~f~~~~-~~g~F~DP~iP---agyAPFnIqnig~~lyVtYA~qd~~ 211 (336)
T TIGR03118 139 VYKGLAVGPTGGGDYLYAANFRQGRIDVFKG---SFRPPP-LPGSFIDPALP---AGYAPFNVQNLGGTLYVTYAQQDAD 211 (336)
T ss_pred eeeeeEEeecCCCceEEEeccCCCceEEecC---cccccc-CCCCccCCCCC---CCCCCcceEEECCeEEEEEEecCCc
Confidence 34466655 6788888766778999975 344333 22 12 2223334667799999986544332
Q ss_pred C--------cceeeEEEee
Q 040781 269 D--------VKSLKIWQVN 279 (316)
Q Consensus 269 ~--------~~~~~iw~l~ 279 (316)
. ...|+++.++
T Consensus 212 ~~d~v~G~G~G~VdvFd~~ 230 (336)
T TIGR03118 212 RNDEVAGAGLGYVNVFTLN 230 (336)
T ss_pred ccccccCCCcceEEEEcCC
Confidence 1 1237777665
No 214
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=21.40 E-value=6.9e+02 Score=23.52 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=38.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+...+++||.+ ..+++|....+.=.+.. .++. ..... .++.. ++.+...+-..+.+..||..++.
T Consensus 454 ~~~~vaVGG~D------gkvhvysl~g~~l~ee~~~~~h--~a~iT----~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 454 DGSEVAVGGQD------GKVHVYSLSGDELKEEAKLLEH--RAAIT----DVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred CCCEEEEeccc------ceEEEEEecCCcccceeeeecc--cCCce----EEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 45677788743 34999998876543332 1211 11111 23333 45566666667789999998876
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.84 E-value=9.8e+02 Score=25.05 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEEEcCCceeeee----cCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC---------
Q 040781 116 LYTLSPSKLSFSF----DPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--------- 182 (316)
Q Consensus 116 l~~~gg~~~~~v~----np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--------- 182 (316)
++..++...+.|| +-.-+.+..-.++...-....+.--.+.-.++-+..+.. +.||+.-.+.
T Consensus 1079 i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv-----IRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV-----IRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCce-----EEEecccccccCCceeEEe
Q ss_pred eeecCCCCcccccCccccceeEEEe----CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeE--eeCC
Q 040781 183 WEICQSMPAVLKDSAASTWLSVAVN----SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVIT--FAND 256 (316)
Q Consensus 183 W~~~~~~p~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~--~~~g 256 (316)
|..+..+-. ..... ++.+. .|.+++.|+ ...|..||.+++. .+..+|.. ....-.+|. ..+|
T Consensus 1154 w~~Ls~~~~--~~r~~----~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~--~~~diP~~---s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1154 WSSLSDQLP--GARGT----GLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQ--VVADIPYG---SSTLVTALSADLVHG 1221 (1387)
T ss_pred eccccccCc--cCCCC----CeeeehhhhCCeEEecCC-eeEEEEEecccce--eEeecccC---CCccceeecccccCC
Q ss_pred EEEEEecCCCCCCcceeeEEEe
Q 040781 257 RLIAVGLTGEAEDVKSLKIWQV 278 (316)
Q Consensus 257 ~L~v~g~~~~~~~~~~~~iw~l 278 (316)
.++++|..+.. +.+|..
T Consensus 1222 n~i~AGfaDGs-----vRvyD~ 1238 (1387)
T KOG1517|consen 1222 NIIAAGFADGS-----VRVYDR 1238 (1387)
T ss_pred ceEEEeecCCc-----eEEeec
No 216
>TIGR03678 het_cyc_patell bacteriocin leader peptide, microcyclamide/patellamide family. This model represents a conserved N-terminal region shared by microcyclamide and patellamide bacteriocins precursors. These bacteriocin precursors are associated with heterocyclization.
Probab=20.53 E-value=1.3e+02 Score=16.06 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=16.7
Q ss_pred CCccCCCCCC-CCCCCCCCCCCcHHHHHH
Q 040781 1 MDKQAAAPEG-DSGSNTNNSIVHGDILEA 28 (316)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~Lp~dll~~ 28 (316)
|++++-.+.. .+--......||.++.+.
T Consensus 1 Md~~NllPqQ~~Pi~R~taGqLp~~lAEL 29 (34)
T TIGR03678 1 MDKKNILPQQGAPVIRGTAGKLPSHLAEL 29 (34)
T ss_pred CcccccCcccCCCeeecccccCcHHHHHh
Confidence 6666666533 233334467899988764
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.48 E-value=6.4e+02 Score=22.74 Aligned_cols=147 Identities=15% Similarity=0.046 Sum_probs=64.0
Q ss_pred eeecCCEEEEEcCC-ceeeeec-CCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC-Ceee
Q 040781 109 RSSHSTLLYTLSPS-KLSFSFD-PLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR-TWEI 185 (316)
Q Consensus 109 ~~s~~~~l~~~gg~-~~~~v~n-p~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~-~W~~ 185 (316)
+.++.|-...+||. +.+-+++ |....-...+.-...-.+..+..-+..+.-+|+ ...+|.+..++ .|..
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~--------d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA--------DSARVWSVNTGAALAR 222 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC--------CceEEEEeccCchhhh
Confidence 33344455555543 5677787 655433322211111111122112224444444 24667777665 3443
Q ss_pred cCCCCcccccCccccceeEEEeCCEEEEEec--ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEK--YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
..+...+ .....|.| +..-.+..++++.. ..+.|..+|+..-.|..+..+...........+-.+..+|++..+|.
T Consensus 223 ~t~~~k~-~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 223 KTPFSKD-EMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred cCCcccc-hhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 3321110 01111111 21111235666553 44567778888766653332222210011122334566788888886
Q ss_pred CC
Q 040781 264 TG 265 (316)
Q Consensus 264 ~~ 265 (316)
..
T Consensus 301 ~d 302 (398)
T KOG0771|consen 301 MD 302 (398)
T ss_pred cC
Confidence 53
No 218
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=20.24 E-value=4.8e+02 Score=25.26 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=27.5
Q ss_pred ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCC
Q 040781 217 YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTG 265 (316)
Q Consensus 217 ~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~ 265 (316)
..+.|.+|++.+.. ..+..-+.| ........+-.++|+++++.|..
T Consensus 740 KDg~~rVy~Prs~e-~pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSRE-QPVYEGKGP--VGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred cCceEEEeCCCCCC-CccccCCCC--ccCcceeEEEEecCcEEEEeccc
Confidence 55688999998877 333323333 01222234457899888877654
No 219
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.00 E-value=79 Score=26.39 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=21.7
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDA 140 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~ 140 (316)
+++|.........+|||.++.|..+|.
T Consensus 193 ~l~~~t~Dg~~~g~~~~~~~~W~~l~~ 219 (251)
T PF11932_consen 193 ALYYQTLDGSQAGVWDPATGQWQWLPD 219 (251)
T ss_pred hheeECCCccceeeecCCCCCCeECCH
Confidence 566666655689999999999999864
Done!