Query 040781
Match_columns 316
No_of_seqs 167 out of 2429
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.9 7.9E-24 2.7E-28 181.6 23.4 210 64-296 12-236 (306)
2 1zgk_A Kelch-like ECH-associat 99.9 1.6E-23 5.3E-28 180.0 22.7 240 36-296 39-298 (308)
3 2xn4_A Kelch-like protein 2; s 99.9 1.7E-23 5.7E-28 179.3 22.1 213 64-296 62-288 (302)
4 1zgk_A Kelch-like ECH-associat 99.9 3.9E-23 1.3E-27 177.6 23.5 213 63-297 24-252 (308)
5 2vpj_A Kelch-like protein 12; 99.9 2.5E-23 8.6E-28 178.1 22.2 239 37-296 32-289 (301)
6 4asc_A Kelch repeat and BTB do 99.9 1.8E-23 6.3E-28 180.1 21.5 198 83-297 15-233 (315)
7 3ii7_A Kelch-like protein 7; p 99.9 3.3E-23 1.1E-27 177.8 22.9 212 64-296 56-283 (306)
8 2xn4_A Kelch-like protein 2; s 99.9 2.9E-23 9.9E-28 177.8 22.4 211 65-297 17-241 (302)
9 2vpj_A Kelch-like protein 12; 99.9 4.2E-23 1.4E-27 176.7 22.7 213 64-297 15-243 (301)
10 4asc_A Kelch repeat and BTB do 99.9 3.8E-23 1.3E-27 178.2 21.0 199 81-295 67-287 (315)
11 2woz_A Kelch repeat and BTB do 99.9 5.7E-23 1.9E-27 177.3 19.6 198 83-297 26-243 (318)
12 2woz_A Kelch repeat and BTB do 99.9 2.2E-22 7.4E-27 173.7 22.0 194 82-291 79-293 (318)
13 2uvk_A YJHT; unknown function, 99.9 2.5E-21 8.5E-26 169.7 20.2 215 64-297 20-306 (357)
14 2uvk_A YJHT; unknown function, 99.9 1.6E-20 5.6E-25 164.4 18.3 203 79-296 84-353 (357)
15 2zwa_A Leucine carboxyl methyl 99.8 7.4E-19 2.5E-23 166.5 20.5 213 65-298 399-647 (695)
16 2zwa_A Leucine carboxyl methyl 99.8 3.1E-17 1.1E-21 155.4 18.7 175 111-295 395-593 (695)
17 1k3i_A Galactose oxidase precu 99.7 8E-17 2.7E-21 152.1 17.0 204 82-296 220-508 (656)
18 1k3i_A Galactose oxidase precu 99.6 4.2E-15 1.4E-19 140.3 15.9 139 83-234 168-329 (656)
19 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 2.7E-11 9.3E-16 74.5 4.5 41 15-55 6-46 (53)
20 2e31_A FBS1, F-box only protei 98.9 1.2E-09 4.1E-14 91.0 4.0 41 15-55 48-89 (297)
21 3v7d_B Cell division control p 98.7 2.1E-06 7.1E-11 77.0 19.5 37 18-54 15-51 (464)
22 2ovr_B FBW7, F-BOX/WD repeat p 98.5 5.8E-06 2E-10 73.8 17.9 40 16-55 17-56 (445)
23 1p22_A F-BOX/WD-repeat protein 98.5 3E-05 1E-09 69.0 22.3 38 18-55 11-52 (435)
24 2ast_B S-phase kinase-associat 97.8 7.8E-06 2.7E-10 70.2 3.5 42 14-55 5-46 (336)
25 3l2o_B F-box only protein 4; s 97.7 1.9E-05 6.4E-10 65.2 3.6 38 18-55 5-42 (312)
26 2p1m_B Transport inhibitor res 97.3 0.00011 3.8E-09 68.0 3.4 36 17-52 5-41 (594)
27 3mbr_X Glutamine cyclotransfer 96.7 0.019 6.6E-07 46.4 10.9 104 112-230 29-135 (243)
28 3ogk_B Coronatine-insensitive 96.7 0.00085 2.9E-08 62.0 3.2 37 18-54 13-50 (592)
29 3dsm_A Uncharacterized protein 96.6 0.27 9.3E-06 41.5 19.7 138 80-231 16-164 (328)
30 3dsm_A Uncharacterized protein 96.4 0.24 8.3E-06 41.8 16.6 135 82-232 65-216 (328)
31 3nol_A Glutamine cyclotransfer 96.4 0.066 2.2E-06 43.7 12.2 103 113-230 52-157 (262)
32 3nok_A Glutaminyl cyclase; bet 96.2 0.055 1.9E-06 44.3 10.9 103 112-230 63-166 (268)
33 2iwa_A Glutamine cyclotransfer 96.1 0.057 2E-06 44.4 10.8 103 114-230 32-137 (266)
34 1q7f_A NHL, brain tumor CG1071 95.8 0.63 2.1E-05 37.9 17.6 146 112-279 130-279 (286)
35 3mbr_X Glutamine cyclotransfer 95.6 0.25 8.6E-06 39.8 12.3 100 147-263 23-122 (243)
36 1l0q_A Surface layer protein; 95.5 0.24 8.1E-06 42.5 13.0 132 82-231 13-150 (391)
37 3q7m_A Lipoprotein YFGL, BAMB; 95.4 1.1 3.9E-05 38.1 18.7 132 82-230 64-209 (376)
38 1l0q_A Surface layer protein; 95.1 0.22 7.4E-06 42.7 11.4 131 82-230 97-235 (391)
39 3nol_A Glutamine cyclotransfer 95.0 0.18 6E-06 41.2 9.6 73 148-230 46-118 (262)
40 3q7m_A Lipoprotein YFGL, BAMB; 95.0 1.5 5.2E-05 37.3 17.4 156 82-263 114-285 (376)
41 1ri6_A Putative isomerase YBHE 94.5 0.42 1.5E-05 39.8 11.5 149 113-279 140-307 (343)
42 1rwi_B Serine/threonine-protei 94.1 1.8 6.2E-05 34.6 16.1 142 113-279 118-263 (270)
43 3vl1_A 26S proteasome regulato 94.0 2.6 8.9E-05 36.2 16.3 104 155-279 259-364 (420)
44 2z2n_A Virginiamycin B lyase; 94.0 2 6.9E-05 34.8 17.3 107 112-233 108-217 (299)
45 3fvz_A Peptidyl-glycine alpha- 94.0 1.9 6.6E-05 36.0 14.5 101 124-230 70-177 (329)
46 3jrp_A Fusion protein of prote 93.8 0.81 2.8E-05 38.6 12.0 103 117-230 26-136 (379)
47 1rwi_B Serine/threonine-protei 93.7 2.1 7.3E-05 34.2 16.8 104 113-230 77-182 (270)
48 3nok_A Glutaminyl cyclase; bet 93.7 0.7 2.4E-05 37.7 10.4 96 148-263 58-153 (268)
49 3vgz_A Uncharacterized protein 93.6 2.7 9.3E-05 34.9 17.4 109 112-231 151-265 (353)
50 3bws_A Protein LP49; two-domai 93.5 2.3 7.7E-05 36.8 14.5 106 112-230 132-245 (433)
51 1q7f_A NHL, brain tumor CG1071 93.4 2.3 7.9E-05 34.4 13.6 106 112-230 87-196 (286)
52 3jrp_A Fusion protein of prote 92.8 1.3 4.5E-05 37.2 11.6 107 113-230 69-193 (379)
53 4ery_A WD repeat-containing pr 92.7 1.9 6.4E-05 35.5 12.2 145 114-279 120-267 (312)
54 2z2n_A Virginiamycin B lyase; 92.4 3.6 0.00012 33.2 17.3 134 83-233 38-175 (299)
55 2ad6_A Methanol dehydrogenase 92.3 3.1 0.0001 38.1 14.0 110 112-232 61-191 (571)
56 3dwl_C Actin-related protein 2 92.2 0.51 1.7E-05 40.1 8.3 148 114-279 23-176 (377)
57 4ery_A WD repeat-containing pr 92.1 4.2 0.00014 33.3 13.9 101 114-230 78-182 (312)
58 4aez_A CDC20, WD repeat-contai 92.0 2.1 7.2E-05 36.8 12.1 103 114-230 104-207 (401)
59 1kv9_A Type II quinohemoprotei 91.7 2.3 7.7E-05 39.9 12.6 111 112-233 65-194 (668)
60 3jro_A Fusion protein of prote 91.7 1.3 4.3E-05 42.1 11.1 106 114-230 22-134 (753)
61 2qc5_A Streptogramin B lactona 91.6 4.6 0.00016 32.6 16.9 134 83-233 85-222 (300)
62 1yiq_A Quinohemoprotein alcoho 91.5 3.2 0.00011 39.0 13.5 111 112-233 69-199 (689)
63 3u4y_A Uncharacterized protein 91.5 3.4 0.00012 34.0 12.6 132 82-229 21-161 (331)
64 2ovr_B FBW7, F-BOX/WD repeat p 91.4 6.6 0.00022 34.1 15.4 56 171-231 339-394 (445)
65 3bws_A Protein LP49; two-domai 91.3 1.8 6.3E-05 37.3 11.0 99 124-230 102-202 (433)
66 1pgu_A Actin interacting prote 91.2 8.3 0.00028 34.8 16.1 144 113-279 456-613 (615)
67 3lrv_A PRE-mRNA-splicing facto 91.2 5.9 0.0002 33.0 14.7 143 113-279 94-243 (343)
68 1got_B GT-beta; complex (GTP-b 91.0 2.7 9.1E-05 35.2 11.5 143 114-279 155-300 (340)
69 3v9f_A Two-component system se 91.0 7.3 0.00025 37.0 15.6 161 83-264 471-647 (781)
70 3i2n_A WD repeat-containing pr 90.9 3.9 0.00013 33.9 12.4 103 114-230 130-245 (357)
71 1gxr_A ESG1, transducin-like e 90.9 3.2 0.00011 34.1 11.8 104 114-230 110-216 (337)
72 2qc5_A Streptogramin B lactona 90.9 5.4 0.00018 32.1 17.1 134 83-233 43-180 (300)
73 1k8k_C P40, ARP2/3 complex 41 90.9 6.3 0.00022 32.9 13.9 134 83-228 32-173 (372)
74 4g56_B MGC81050 protein; prote 90.7 3.2 0.00011 35.1 11.8 105 113-230 105-215 (357)
75 4e54_B DNA damage-binding prot 90.7 7.8 0.00027 33.6 14.5 104 116-230 134-242 (435)
76 1got_B GT-beta; complex (GTP-b 90.5 5.4 0.00018 33.3 12.9 105 113-230 195-303 (340)
77 1kb0_A Quinohemoprotein alcoho 90.5 3.7 0.00013 38.5 12.8 110 112-232 76-205 (677)
78 3vl1_A 26S proteasome regulato 90.4 7.7 0.00026 33.1 14.5 23 208-230 258-280 (420)
79 2iwa_A Glutamine cyclotransfer 90.4 6.4 0.00022 32.1 15.5 136 81-230 44-183 (266)
80 1gxr_A ESG1, transducin-like e 90.2 3.2 0.00011 34.0 11.2 140 114-279 154-295 (337)
81 2aq5_A Coronin-1A; WD40 repeat 89.9 5.3 0.00018 34.1 12.6 104 115-230 146-256 (402)
82 4gga_A P55CDC, cell division c 89.9 3.6 0.00012 35.6 11.6 104 112-230 115-220 (420)
83 4gqb_B Methylosome protein 50; 89.7 3.3 0.00011 34.9 10.9 105 113-230 93-203 (344)
84 3ow8_A WD repeat-containing pr 89.4 8.2 0.00028 32.0 15.4 102 114-230 176-281 (321)
85 1p22_A F-BOX/WD-repeat protein 89.4 9.9 0.00034 32.9 14.9 139 114-279 224-364 (435)
86 2hqs_A Protein TOLB; TOLB, PAL 89.2 10 0.00035 32.8 14.9 94 123-230 203-302 (415)
87 1r5m_A SIR4-interacting protei 89.1 9.6 0.00033 32.3 15.2 143 112-279 216-360 (425)
88 3iz6_a 40S ribosomal protein R 88.9 4.7 0.00016 34.3 11.4 102 121-230 86-191 (380)
89 3ow8_A WD repeat-containing pr 88.9 6 0.00021 32.8 11.9 102 114-230 92-197 (321)
90 4gqb_B Methylosome protein 50; 88.8 3.6 0.00012 34.7 10.5 104 113-230 138-248 (344)
91 1erj_A Transcriptional repress 88.6 2.9 0.0001 35.8 10.0 103 113-230 134-240 (393)
92 2dg1_A DRP35, lactonase; beta 88.6 8.3 0.00028 31.8 12.6 112 112-232 54-175 (333)
93 3hfq_A Uncharacterized protein 88.3 5.1 0.00018 33.3 11.2 184 83-279 20-217 (347)
94 2hes_X YDR267CP; beta-propelle 88.1 1.4 4.7E-05 36.9 7.4 72 203-279 255-327 (330)
95 1ri6_A Putative isomerase YBHE 88.1 7 0.00024 32.1 11.8 108 112-231 48-164 (343)
96 4g56_B MGC81050 protein; prote 88.1 3.1 0.00011 35.2 9.6 105 114-230 151-260 (357)
97 1jmx_B Amine dehydrogenase; ox 88.0 2.4 8.4E-05 35.1 8.9 109 112-230 9-136 (349)
98 3ei3_B DNA damage-binding prot 87.9 7.2 0.00025 32.9 12.0 98 121-229 94-195 (383)
99 1w6s_A Methanol dehydrogenase 87.8 7.7 0.00026 35.7 12.6 110 112-232 61-197 (599)
100 3vgz_A Uncharacterized protein 87.8 11 0.00036 31.2 19.1 104 112-230 195-305 (353)
101 2fp8_A Strictosidine synthase; 87.7 3.8 0.00013 34.0 9.9 132 123-279 165-312 (322)
102 4aez_A CDC20, WD repeat-contai 87.6 2.6 8.7E-05 36.2 9.0 136 122-279 238-379 (401)
103 3u4y_A Uncharacterized protein 87.5 2.3 7.7E-05 35.2 8.3 106 113-230 187-306 (331)
104 3scy_A Hypothetical bacterial 87.3 2.8 9.7E-05 35.2 8.9 105 155-279 223-336 (361)
105 1vyh_C Platelet-activating fac 87.3 4 0.00014 35.3 10.0 142 114-279 120-264 (410)
106 2pbi_B Guanine nucleotide-bind 87.3 4.7 0.00016 34.0 10.3 97 122-230 219-317 (354)
107 4aow_A Guanine nucleotide-bind 87.1 6.7 0.00023 32.2 11.1 94 122-230 194-288 (340)
108 2pbi_B Guanine nucleotide-bind 87.1 8.4 0.00029 32.4 11.8 143 115-279 168-314 (354)
109 2vdu_B TRNA (guanine-N(7)-)-me 87.1 12 0.0004 32.6 13.1 182 114-311 210-423 (450)
110 4ggc_A P55CDC, cell division c 86.9 11 0.00038 30.5 12.3 104 112-230 35-140 (318)
111 3i2n_A WD repeat-containing pr 86.7 9.1 0.00031 31.6 11.8 103 114-230 31-150 (357)
112 3jro_A Fusion protein of prote 86.6 4.3 0.00015 38.4 10.6 106 113-229 67-190 (753)
113 3hrp_A Uncharacterized protein 86.6 13 0.00046 32.1 13.0 109 112-231 140-252 (409)
114 3fm0_A Protein CIAO1; WDR39,SG 86.6 4.7 0.00016 33.8 9.9 105 114-229 28-137 (345)
115 3bg1_A Protein SEC13 homolog; 86.4 5.2 0.00018 33.0 10.0 103 117-231 28-140 (316)
116 3v65_B Low-density lipoprotein 86.4 15 0.00051 31.5 20.0 105 112-230 126-236 (386)
117 2pm7_B Protein transport prote 86.3 12 0.00041 30.4 12.6 105 114-230 67-191 (297)
118 3g4e_A Regucalcin; six bladed 86.3 6.5 0.00022 32.1 10.4 131 82-226 36-178 (297)
119 2pm7_B Protein transport prote 86.1 12 0.00042 30.3 13.7 104 114-229 21-133 (297)
120 1yfq_A Cell cycle arrest prote 86.0 13 0.00044 30.5 13.1 103 113-228 68-179 (342)
121 1flg_A Protein (quinoprotein e 86.0 13 0.00044 34.1 13.0 110 112-232 67-199 (582)
122 3mkq_A Coatomer beta'-subunit; 85.5 16 0.00053 34.5 13.9 104 113-230 67-174 (814)
123 1k8k_C P40, ARP2/3 complex 41 85.5 1.5 5.2E-05 36.8 6.2 106 155-279 20-126 (372)
124 2pm9_A Protein WEB1, protein t 85.4 6.6 0.00023 33.4 10.4 148 114-279 178-336 (416)
125 3odt_A Protein DOA1; ubiquitin 85.3 13 0.00045 29.9 12.4 139 113-279 155-295 (313)
126 3lrv_A PRE-mRNA-splicing facto 85.2 15 0.00051 30.5 15.2 154 114-290 139-299 (343)
127 3v9f_A Two-component system se 85.2 14 0.00049 35.0 13.4 139 83-235 429-575 (781)
128 1r5m_A SIR4-interacting protei 85.2 8.9 0.0003 32.5 11.1 109 114-230 121-238 (425)
129 3iz6_a 40S ribosomal protein R 85.2 16 0.00056 30.9 14.8 111 155-279 261-374 (380)
130 2dg1_A DRP35, lactonase; beta 85.1 13 0.00045 30.5 11.9 137 83-228 68-213 (333)
131 2ynn_A Coatomer subunit beta'; 84.8 7.7 0.00026 31.7 10.2 104 113-230 67-174 (304)
132 2ynn_A Coatomer subunit beta'; 84.7 5.4 0.00018 32.7 9.2 100 114-229 26-129 (304)
133 3f3f_A Nucleoporin SEH1; struc 84.6 8.4 0.00029 31.4 10.4 20 210-229 231-250 (351)
134 4a11_B DNA excision repair pro 84.5 6.7 0.00023 33.1 10.0 100 115-230 114-220 (408)
135 1erj_A Transcriptional repress 84.5 6 0.0002 33.8 9.7 108 114-230 178-289 (393)
136 2aq5_A Coronin-1A; WD40 repeat 84.2 14 0.00048 31.4 12.0 149 113-279 93-253 (402)
137 3sfz_A APAF-1, apoptotic pepti 84.2 12 0.00042 37.4 13.0 139 114-279 1016-1157(1249)
138 2pm9_A Protein WEB1, protein t 84.0 6.8 0.00023 33.3 9.9 104 114-230 79-199 (416)
139 3g4e_A Regucalcin; six bladed 83.7 6.5 0.00022 32.1 9.2 102 113-228 24-139 (297)
140 4e54_B DNA damage-binding prot 83.7 4.9 0.00017 34.9 8.9 65 155-231 132-199 (435)
141 3zwl_B Eukaryotic translation 83.6 8.4 0.00029 31.9 10.1 63 114-184 188-253 (369)
142 3tc9_A Hypothetical hydrolase; 83.3 5.8 0.0002 34.8 9.1 107 113-230 149-259 (430)
143 3v64_C Agrin; beta propeller, 83.2 20 0.00067 30.2 21.6 132 83-230 55-193 (349)
144 1ijq_A LDL receptor, low-densi 83.2 18 0.00063 29.9 20.1 132 83-230 12-154 (316)
145 3bg1_A Protein SEC13 homolog; 83.0 9.5 0.00033 31.4 10.1 67 113-185 71-142 (316)
146 1vyh_C Platelet-activating fac 83.0 8.7 0.0003 33.1 10.1 61 209-279 308-368 (410)
147 1pjx_A Dfpase, DIISOPROPYLFLUO 82.9 17 0.00059 29.4 12.5 134 83-227 48-206 (314)
148 3fm0_A Protein CIAO1; WDR39,SG 82.9 2.6 8.7E-05 35.5 6.5 97 171-279 38-135 (345)
149 3hfq_A Uncharacterized protein 82.8 2.8 9.4E-05 35.1 6.6 58 172-235 19-79 (347)
150 4a11_B DNA excision repair pro 82.7 2.8 9.5E-05 35.6 6.8 103 114-230 57-177 (408)
151 1pgu_A Actin interacting prote 82.7 15 0.00052 33.0 12.1 104 115-230 175-285 (615)
152 3mkq_A Coatomer beta'-subunit; 82.6 26 0.00088 33.0 14.0 104 114-230 110-219 (814)
153 4a2l_A BT_4663, two-component 82.4 34 0.0012 32.4 14.9 158 83-264 473-650 (795)
154 3fvz_A Peptidyl-glycine alpha- 81.4 21 0.00073 29.4 17.0 149 113-279 154-321 (329)
155 3dwl_C Actin-related protein 2 81.4 0.97 3.3E-05 38.3 3.3 60 171-235 33-94 (377)
156 3k26_A Polycomb protein EED; W 81.0 22 0.00075 29.2 12.2 145 114-279 35-191 (366)
157 2xyi_A Probable histone-bindin 80.7 22 0.00075 30.6 12.0 146 115-279 196-352 (430)
158 1sq9_A Antiviral protein SKI8; 80.4 19 0.00064 30.2 11.3 104 114-228 27-157 (397)
159 3sfz_A APAF-1, apoptotic pepti 80.1 11 0.00038 37.7 11.0 95 121-230 981-1076(1249)
160 1sq9_A Antiviral protein SKI8; 80.0 19 0.00066 30.2 11.2 112 113-230 197-324 (397)
161 3scy_A Hypothetical bacterial 79.0 22 0.00076 29.5 11.2 98 123-229 27-130 (361)
162 3ott_A Two-component system se 78.9 43 0.0015 31.4 14.2 129 114-264 483-617 (758)
163 1npe_A Nidogen, entactin; glyc 78.8 23 0.00077 28.1 15.5 105 112-230 46-157 (267)
164 3frx_A Guanine nucleotide-bind 78.5 24 0.00083 28.9 11.1 99 114-230 77-187 (319)
165 3k26_A Polycomb protein EED; W 78.4 11 0.00039 31.1 9.1 27 203-230 236-262 (366)
166 3o4h_A Acylamino-acid-releasin 78.3 12 0.0004 33.9 9.7 105 114-232 123-231 (582)
167 3azo_A Aminopeptidase; POP fam 78.0 37 0.0013 31.1 13.2 109 123-235 161-281 (662)
168 2ojh_A Uncharacterized protein 77.8 24 0.00081 27.8 16.8 139 81-232 22-166 (297)
169 4gga_A P55CDC, cell division c 77.7 25 0.00087 30.0 11.4 91 171-279 301-394 (420)
170 3e5z_A Putative gluconolactona 77.0 25 0.00087 28.2 10.7 104 113-230 39-163 (296)
171 2hz6_A Endoplasmic reticulum t 76.9 1.6 5.5E-05 37.4 3.3 64 112-185 8-75 (369)
172 4ggc_A P55CDC, cell division c 76.7 27 0.00094 28.0 12.3 93 171-279 221-314 (318)
173 3odt_A Protein DOA1; ubiquitin 76.5 21 0.00071 28.6 10.0 101 112-225 28-130 (313)
174 3ei3_B DNA damage-binding prot 76.4 28 0.00096 29.1 11.1 131 83-229 98-237 (383)
175 2ojh_A Uncharacterized protein 76.4 26 0.00089 27.5 11.5 93 123-230 22-121 (297)
176 1yfq_A Cell cycle arrest prote 76.2 30 0.001 28.2 14.6 129 83-229 81-226 (342)
177 3hrp_A Uncharacterized protein 75.9 38 0.0013 29.2 16.1 112 113-231 230-357 (409)
178 2p4o_A Hypothetical protein; p 75.8 31 0.0011 28.1 15.6 106 111-228 125-242 (306)
179 4a2l_A BT_4663, two-component 75.8 55 0.0019 31.0 15.0 109 112-235 140-251 (795)
180 2xyi_A Probable histone-bindin 75.6 25 0.00085 30.3 10.7 28 203-230 236-265 (430)
181 3m0c_C LDL receptor, low-densi 75.2 59 0.002 31.0 19.1 102 113-230 435-548 (791)
182 4h5i_A Guanine nucleotide-exch 75.1 36 0.0012 28.6 14.8 155 111-279 185-342 (365)
183 3v7d_B Cell division control p 75.0 40 0.0014 29.0 19.0 139 114-279 323-462 (464)
184 1qks_A Cytochrome CD1 nitrite 74.8 9.1 0.00031 35.0 7.8 102 113-230 166-277 (567)
185 1pby_B Quinohemoprotein amine 74.7 32 0.0011 27.8 11.5 102 119-230 7-126 (337)
186 2vdu_B TRNA (guanine-N(7)-)-me 74.2 42 0.0014 28.9 14.1 104 114-230 162-273 (450)
187 1nir_A Nitrite reductase; hemo 74.2 46 0.0016 30.0 12.4 105 121-239 300-418 (543)
188 3gre_A Serine/threonine-protei 74.0 41 0.0014 28.7 11.9 105 114-230 182-294 (437)
189 2hqs_A Protein TOLB; TOLB, PAL 73.9 42 0.0014 28.8 15.5 107 113-233 234-349 (415)
190 3sjl_D Methylamine dehydrogena 73.5 24 0.00082 30.4 9.7 69 154-230 291-365 (386)
191 1nir_A Nitrite reductase; hemo 72.1 23 0.00079 32.0 9.8 101 112-230 147-259 (543)
192 2p4o_A Hypothetical protein; p 71.3 40 0.0014 27.4 16.6 106 113-228 82-198 (306)
193 1kb0_A Quinohemoprotein alcoho 71.2 47 0.0016 30.9 12.0 70 152-233 75-154 (677)
194 3dm0_A Maltose-binding peripla 70.9 32 0.0011 31.9 10.8 104 113-230 441-552 (694)
195 1kv9_A Type II quinohemoprotei 70.6 48 0.0016 30.8 11.9 74 152-233 64-143 (668)
196 1n7d_A LDL receptor, low-densi 70.2 51 0.0017 30.9 12.0 103 112-229 463-572 (699)
197 3dm0_A Maltose-binding peripla 69.8 28 0.00097 32.2 10.2 91 123-230 541-634 (694)
198 4aow_A Guanine nucleotide-bind 69.4 40 0.0014 27.3 10.2 21 210-230 186-206 (340)
199 4hw6_A Hypothetical protein, I 69.1 27 0.00093 30.5 9.3 108 113-231 152-262 (433)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 68.4 44 0.0015 26.8 12.8 107 112-231 27-164 (314)
201 1n7d_A LDL receptor, low-densi 68.2 79 0.0027 29.6 13.9 106 113-230 507-616 (699)
202 2fp8_A Strictosidine synthase; 68.0 48 0.0017 27.1 10.5 110 113-230 196-315 (322)
203 3p5b_L Low density lipoprotein 68.0 58 0.002 27.9 18.6 132 83-230 94-236 (400)
204 1yiq_A Quinohemoprotein alcoho 67.5 71 0.0024 29.8 12.3 74 152-233 68-147 (689)
205 1ijq_A LDL receptor, low-densi 67.3 51 0.0017 27.1 15.2 104 112-230 87-197 (316)
206 1w6s_A Methanol dehydrogenase 67.2 67 0.0023 29.4 11.9 74 112-186 116-199 (599)
207 3e5z_A Putative gluconolactona 64.6 53 0.0018 26.2 13.6 135 83-230 52-205 (296)
208 3no2_A Uncharacterized protein 64.4 54 0.0019 26.3 17.2 134 112-263 87-231 (276)
209 2ad6_A Methanol dehydrogenase 64.4 84 0.0029 28.5 12.0 70 152-232 60-140 (571)
210 3dr2_A Exported gluconolactona 64.3 56 0.0019 26.4 10.8 108 113-234 56-184 (305)
211 2ghs_A AGR_C_1268P; regucalcin 64.0 60 0.002 26.7 15.0 131 83-227 73-209 (326)
212 2hes_X YDR267CP; beta-propelle 63.6 60 0.0021 26.6 12.9 100 117-227 27-137 (330)
213 3f3f_A Nucleoporin SEH1; struc 63.6 56 0.0019 26.2 14.5 63 209-279 182-248 (351)
214 1npe_A Nidogen, entactin; glyc 63.5 53 0.0018 25.9 14.3 102 113-230 133-240 (267)
215 3zwl_B Eukaryotic translation 63.2 56 0.0019 26.6 10.0 95 172-279 55-150 (369)
216 2xzm_R RACK1; ribosome, transl 61.1 68 0.0023 26.3 10.4 28 203-230 260-287 (343)
217 2xzm_R RACK1; ribosome, transl 60.7 69 0.0024 26.3 11.4 22 114-135 88-110 (343)
218 1jmx_B Amine dehydrogenase; ox 60.4 31 0.001 28.2 7.8 65 154-230 10-76 (349)
219 3no2_A Uncharacterized protein 60.3 65 0.0022 25.8 13.0 131 82-227 16-154 (276)
220 1pby_B Quinohemoprotein amine 60.1 65 0.0022 25.8 11.3 136 82-230 12-165 (337)
221 1nr0_A Actin interacting prote 59.6 76 0.0026 28.8 10.9 106 114-230 202-315 (611)
222 3dw8_B Serine/threonine-protei 57.5 57 0.0019 27.7 9.3 108 114-228 189-315 (447)
223 3frx_A Guanine nucleotide-bind 57.5 76 0.0026 25.8 10.3 22 253-279 295-316 (319)
224 2kwv_A RAD30 homolog B, DNA po 57.4 4.7 0.00016 22.6 1.3 17 18-34 21-37 (48)
225 3mmy_A MRNA export factor; mRN 56.7 78 0.0027 25.7 13.0 103 114-230 54-162 (368)
226 3mmy_A MRNA export factor; mRN 56.0 31 0.0011 28.3 7.1 65 156-231 55-120 (368)
227 2ymu_A WD-40 repeat protein; u 55.0 1.1E+02 0.0039 27.0 13.0 99 115-229 440-540 (577)
228 2mad_H Methylamine dehydrogena 52.8 1E+02 0.0036 26.0 12.0 112 112-230 31-158 (373)
229 4h5i_A Guanine nucleotide-exch 51.1 1.1E+02 0.0036 25.6 9.7 137 123-279 157-299 (365)
230 3gre_A Serine/threonine-protei 49.9 49 0.0017 28.2 7.6 64 155-230 182-247 (437)
231 1nr0_A Actin interacting prote 49.1 45 0.0015 30.4 7.4 95 171-279 470-566 (611)
232 2ghs_A AGR_C_1268P; regucalcin 48.0 1.1E+02 0.0038 24.9 12.6 99 113-225 60-167 (326)
233 4a0p_A LRP6, LRP-6, low-densit 47.2 1.7E+02 0.0059 26.8 11.3 102 114-230 135-239 (628)
234 3v65_B Low-density lipoprotein 45.3 1.4E+02 0.0048 25.3 18.9 128 113-263 170-306 (386)
235 2z3z_A Dipeptidyl aminopeptida 44.6 1.9E+02 0.0064 26.5 13.6 64 114-186 93-161 (706)
236 3m0c_C LDL receptor, low-densi 44.2 2.2E+02 0.0074 27.1 15.4 107 112-230 524-634 (791)
237 3hxj_A Pyrrolo-quinoline quino 44.0 1.2E+02 0.0042 24.2 11.2 92 113-227 107-203 (330)
238 3c75_H MADH, methylamine dehyd 43.6 68 0.0023 28.0 7.3 114 111-230 82-211 (426)
239 2z3z_A Dipeptidyl aminopeptida 42.5 2E+02 0.0069 26.3 14.0 99 123-232 284-395 (706)
240 2mad_H Methylamine dehydrogena 42.1 1.6E+02 0.0053 24.9 10.6 69 154-230 278-352 (373)
241 3p5b_L Low density lipoprotein 41.6 1.6E+02 0.0056 25.0 15.0 126 113-263 170-308 (400)
242 2xbg_A YCF48-like protein; pho 39.6 1.6E+02 0.0053 24.2 13.7 154 90-263 151-311 (327)
243 3v64_C Agrin; beta propeller, 39.5 1.6E+02 0.0056 24.4 19.6 103 112-229 126-235 (349)
244 1jof_A Carboxy-CIS,CIS-muconat 38.8 1.6E+02 0.0056 24.2 12.6 156 110-279 153-340 (365)
245 1flg_A Protein (quinoprotein e 38.3 1.3E+02 0.0044 27.4 8.6 77 171-263 466-547 (582)
246 2be1_A Serine/threonine-protei 37.3 67 0.0023 27.0 6.1 109 113-230 10-132 (339)
247 2ymu_A WD-40 repeat protein; u 36.8 2.2E+02 0.0075 25.0 14.0 100 114-229 316-417 (577)
248 3sov_A LRP-6, low-density lipo 36.5 1.8E+02 0.006 23.9 12.0 105 112-230 132-240 (318)
249 3sov_A LRP-6, low-density lipo 35.0 1.9E+02 0.0064 23.7 15.8 103 113-229 46-155 (318)
250 2ecf_A Dipeptidyl peptidase IV 34.8 2.7E+02 0.0093 25.6 13.3 64 113-186 120-187 (741)
251 2bkl_A Prolyl endopeptidase; m 34.8 2.7E+02 0.0093 25.6 11.3 111 112-234 281-403 (695)
252 3hxj_A Pyrrolo-quinoline quino 31.5 2E+02 0.0068 22.9 12.4 122 83-230 119-246 (330)
253 3s94_A LRP-6, low-density lipo 29.5 3.3E+02 0.011 24.9 17.2 103 112-230 50-161 (619)
254 3dw8_B Serine/threonine-protei 29.2 2.5E+02 0.0086 23.5 10.8 28 203-230 231-260 (447)
255 3azo_A Aminopeptidase; POP fam 29.0 3.2E+02 0.011 24.6 16.1 137 123-279 217-366 (662)
256 3o4h_A Acylamino-acid-releasin 28.5 3E+02 0.01 24.4 9.4 98 123-226 175-274 (582)
257 2ecf_A Dipeptidyl peptidase IV 27.1 3.7E+02 0.013 24.6 13.8 26 113-139 163-188 (741)
258 2bkl_A Prolyl endopeptidase; m 26.7 3.7E+02 0.013 24.6 12.0 96 123-229 252-352 (695)
259 3vu4_A KMHSV2; beta-propeller 26.6 2.6E+02 0.0091 22.8 15.6 69 203-279 200-270 (355)
260 2qe8_A Uncharacterized protein 26.4 1.6E+02 0.0055 24.1 6.8 28 203-230 71-104 (343)
261 1qks_A Cytochrome CD1 nitrite 25.8 3.7E+02 0.013 24.2 11.9 89 82-182 178-277 (567)
262 2dk7_A Transcription elongatio 25.0 46 0.0016 20.9 2.2 21 114-134 21-41 (73)
263 3iuj_A Prolyl endopeptidase; h 24.2 4.2E+02 0.014 24.3 12.5 114 109-235 287-412 (693)
264 3q6k_A 43.2 kDa salivary prote 24.1 2E+02 0.0068 24.6 6.8 80 154-234 97-197 (381)
265 2xbg_A YCF48-like protein; pho 23.8 3E+02 0.01 22.4 16.4 130 90-235 24-158 (327)
266 3vu4_A KMHSV2; beta-propeller 23.8 3E+02 0.01 22.5 13.0 101 110-229 27-129 (355)
267 1itv_A MMP9; adaptive molecula 22.5 2.5E+02 0.0086 21.2 10.6 102 113-230 64-176 (195)
268 1pex_A Collagenase-3, MMP-13; 22.4 2.6E+02 0.009 21.3 11.8 101 113-230 79-194 (207)
269 1yr2_A Prolyl oligopeptidase; 22.3 4.7E+02 0.016 24.2 12.8 139 82-234 295-447 (741)
270 2qe8_A Uncharacterized protein 22.3 2.7E+02 0.0091 22.7 7.4 72 154-230 77-156 (343)
271 2xdw_A Prolyl endopeptidase; a 22.1 4.6E+02 0.016 24.0 14.1 151 66-230 246-416 (710)
272 3c5m_A Oligogalacturonate lyas 22.0 3.2E+02 0.011 22.2 13.6 65 123-189 216-282 (396)
273 3c75_H MADH, methylamine dehyd 22.0 3.9E+02 0.013 23.1 9.7 69 154-230 330-404 (426)
274 3tc9_A Hypothetical hydrolase; 21.7 3.8E+02 0.013 22.9 12.4 128 83-228 161-301 (430)
275 2oiz_A Aromatic amine dehydrog 21.3 3.5E+02 0.012 22.3 10.8 65 154-229 265-335 (361)
276 4hw6_A Hypothetical protein, I 21.2 4E+02 0.014 22.9 13.6 109 113-227 239-373 (433)
277 2oaj_A Protein SNI1; WD40 repe 20.5 5.7E+02 0.02 24.5 15.0 172 81-279 39-241 (902)
278 1yr2_A Prolyl oligopeptidase; 20.4 5.1E+02 0.018 23.9 13.5 97 123-230 294-397 (741)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.93 E-value=7.9e-24 Score=181.65 Aligned_cols=210 Identities=16% Similarity=0.214 Sum_probs=164.4
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEcCC-----ceeeeecCCCCceee
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPS-----KLSFSFDPLHLAWHH 137 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~gg~-----~~~~v~np~t~~w~~ 137 (316)
..+++++... . ...++.||+..++|..++ +++ ++.....+..++.||++||. +++++|||.+++|..
T Consensus 12 ~~l~~~GG~~--~---~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGS--Q---PQSCRYFNPKDYSWTDIR--CPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp CEEEEEECCS--S---TTSEEEEETTTTEEEECC--CCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred ceEEEEeCCC--C---CceEEEecCCCCCEecCC--CCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 4667777655 2 456889999999999996 433 22333444567899999983 689999999999999
Q ss_pred cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc
Q 040781 138 VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY 217 (316)
Q Consensus 138 lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~ 217 (316)
+++++.+|..++.+.++++||++||..........+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||.
T Consensus 85 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~ 158 (306)
T 3ii7_A 85 KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSH----GMVEANGLIYVCGGS 158 (306)
T ss_dssp EECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEECCE
T ss_pred CCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Cccee----EEEEECCEEEEECCC
Confidence 999999999999999999999999986443466789999999999999988887 67666 778889999999983
Q ss_pred ---------cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhh
Q 040781 218 ---------SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEEL 288 (316)
Q Consensus 218 ---------~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W 288 (316)
.+.+++||+.+++|+.+..+|.+ ...+.++..+++|+++||....... -.+|.+| ..+ ++|
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG~~~~~~~--~~~~~yd--~~~-~~W 228 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEA-----RKNHGLVFVKDKIFAVGGQNGLGGL--DNVEYYD--IKL-NEW 228 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCEETTEEB--CCEEEEE--TTT-TEE
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccch-----hhcceEEEECCEEEEEeCCCCCCCC--ceEEEee--CCC-CcE
Confidence 56789999999999998866655 2344556679999999986544222 3456666 333 349
Q ss_pred hhcCCCcH
Q 040781 289 KEIGEMPK 296 (316)
Q Consensus 289 ~~i~~~p~ 296 (316)
+++..||.
T Consensus 229 ~~~~~~p~ 236 (306)
T 3ii7_A 229 KMVSPMPW 236 (306)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99998885
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.92 E-value=1.6e-23 Score=180.04 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=175.8
Q ss_pred hhhHHHhhhhHHHHHHhhccccccC----CCCCeEEEEecC----CCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccc
Q 040781 36 IDLASACYVSRSWNRAVFSSLRRVN----KIKPWLLLHTQS----QRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDF 106 (316)
Q Consensus 36 ~~l~r~r~VcK~W~~li~s~~~~~~----~~~~~l~~~~~~----~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~ 106 (316)
.++..+....+.|..+..-+..+.. .....+++++.. . .....+.++.||+..++|..++ +++. ...
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~ 114 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD--GNTDSSALDCYNPMTNQWSPCA--PMSVPRNR 114 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETT--EEEECCCEEEEETTTTEEEECC--CCSSCCBT
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCC--CCeecceEEEECCCCCeEeECC--CCCcCccc
Confidence 4455555666777766433311111 123455666554 2 2223456889999999999996 4432 223
Q ss_pred eeeeecCCEEEEEcC------CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781 107 LLRSSHSTLLYTLSP------SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT 180 (316)
Q Consensus 107 ~~~~s~~~~l~~~gg------~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t 180 (316)
...+..++.||++|| .+++++|||.+++|..+++++.+|..++.+.++.+||++||..... ....+++||+.+
T Consensus 115 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~ 193 (308)
T 1zgk_A 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPER 193 (308)
T ss_dssp CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTT
T ss_pred cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCC
Confidence 344445799999998 2689999999999999999999999999999999999999976543 367799999999
Q ss_pred CCeeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeC
Q 040781 181 RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAN 255 (316)
Q Consensus 181 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~ 255 (316)
++|+.+.++|. ++..+ ++++.++.+|++||. .+.++.||+.+++|+.+..+|.+ + ....++..+
T Consensus 194 ~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~ 262 (308)
T 1zgk_A 194 NEWRMITAMNT--IRSGA----GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR----R-SALGITVHQ 262 (308)
T ss_dssp TEEEECCCCSS--CCBSC----EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC----C-BSCEEEEET
T ss_pred CeEeeCCCCCC--ccccc----eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC----c-cceEEEEEC
Confidence 99999988887 67666 778889999999984 35799999999999999866665 2 234455679
Q ss_pred CEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 256 DRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 256 g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
++|+++||....... -++|.+| ..+ ++|+++..||.
T Consensus 263 ~~i~v~GG~~~~~~~--~~v~~yd--~~~-~~W~~~~~~p~ 298 (308)
T 1zgk_A 263 GRIYVLGGYDGHTFL--DSVECYD--PDT-DTWSEVTRMTS 298 (308)
T ss_dssp TEEEEECCBCSSCBC--CEEEEEE--TTT-TEEEEEEECSS
T ss_pred CEEEEEcCcCCCccc--ceEEEEc--CCC-CEEeecCCCCC
Confidence 999999986554333 3556666 333 34999988875
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.92 E-value=1.7e-23 Score=179.27 Aligned_cols=213 Identities=18% Similarity=0.229 Sum_probs=162.2
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCcee
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWH 136 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~ 136 (316)
..+++++... .......++.||+..++|..++ +++. ......+..++.||++||. +++++|||.+++|.
T Consensus 62 ~~lyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 62 GLVFAVGGFN--GSLRVRTVDSYDPVKDQWTSVA--NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TEEEEESCBC--SSSBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CEEEEEeCcC--CCccccceEEECCCCCceeeCC--CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 4466666654 3334566899999999999996 4432 2233344457899999973 57999999999999
Q ss_pred ecCCCCCCCCCCEEEEECCEEEEEcCcCCCC-CCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781 137 HVDAPRVWRTDPVVALVGDKVVVAGGACDFE-DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE 215 (316)
Q Consensus 137 ~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~-~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~ 215 (316)
.+++++.+|..++.+.+++++|++||..... .....+++||+.+++|+.+.++|. ++..+ ++++.++.+|++|
T Consensus 138 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~G 211 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST--RRSGA----GVGVLNNLLYAVG 211 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEEC
T ss_pred ecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc--ccccc----cEEEECCEEEEEC
Confidence 9999999999999999999999999975442 235679999999999999988877 67666 7888899999999
Q ss_pred cc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh
Q 040781 216 KY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE 290 (316)
Q Consensus 216 ~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~ 290 (316)
|. .+.++.||+++++|+.+..+|.+ + ..+.++..+|+|+++||....... -++|.+| ..+ ++|++
T Consensus 212 G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r-~~~~~~~~~~~i~v~GG~~~~~~~--~~v~~yd--~~~-~~W~~ 281 (302)
T 2xn4_A 212 GHDGPLVRKSVEVYDPTTNAWRQVADMNMC----R-RNAGVCAVNGLLYVVGGDDGSCNL--ASVEYYN--PTT-DKWTV 281 (302)
T ss_dssp CBSSSSBCCCEEEEETTTTEEEEECCCSSC----C-BSCEEEEETTEEEEECCBCSSSBC--CCEEEEE--TTT-TEEEE
T ss_pred CCCCCcccceEEEEeCCCCCEeeCCCCCCc----c-ccCeEEEECCEEEEECCcCCCccc--ccEEEEc--CCC-CeEEE
Confidence 84 35789999999999998876665 2 234455679999999987554333 3456665 323 34999
Q ss_pred cC-CCcH
Q 040781 291 IG-EMPK 296 (316)
Q Consensus 291 i~-~~p~ 296 (316)
+. .||.
T Consensus 282 ~~~~~~~ 288 (302)
T 2xn4_A 282 VSSCMST 288 (302)
T ss_dssp CSSCCSS
T ss_pred CCcccCc
Confidence 86 6764
No 4
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.92 E-value=3.9e-23 Score=177.56 Aligned_cols=213 Identities=15% Similarity=0.225 Sum_probs=163.1
Q ss_pred CCeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC----------ceeeeecCC
Q 040781 63 KPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS----------KLSFSFDPL 131 (316)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~----------~~~~v~np~ 131 (316)
...+++++... . .....++.||+..++|..++ +++. ......+..++.||++||. +++++|||.
T Consensus 24 ~~~i~v~GG~~--~-~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYF--R-QSLSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBS--S-SBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcC--C-CCcceEEEEcCCCCeEeECC--CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34566666542 1 24556889999999999995 4332 2233334557999999985 478999999
Q ss_pred CCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEE
Q 040781 132 HLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQL 211 (316)
Q Consensus 132 t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 211 (316)
+++|..+++++.+|..++++.++++||++||..... ....+++||+.+++|+.+.++|. ++..+ ++++.++.+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~i 171 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGV----GVAVLNRLL 171 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSC----EEEEETTEE
T ss_pred CCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCc--cccce----EEEEECCEE
Confidence 999999999999999999999999999999975432 45679999999999999998887 67666 778889999
Q ss_pred EEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchh
Q 040781 212 YVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLE 286 (316)
Q Consensus 212 y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~ 286 (316)
|++||. .+.++.||+.+++|..+..+|.+ + ....++..+++|+++||....... -++|.+| ..+ +
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~~~iyv~GG~~~~~~~--~~v~~yd--~~~-~ 241 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI----R-SGAGVCVLHNCIYAAGGYDGQDQL--NSVERYD--VET-E 241 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC----C-BSCEEEEETTEEEEECCBCSSSBC--CCEEEEE--TTT-T
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc----c-ccceEEEECCEEEEEeCCCCCCcc--ceEEEEe--CCC-C
Confidence 999984 35789999999999999877665 2 233455669999999987654333 4456666 333 3
Q ss_pred hhhhcCCCcHH
Q 040781 287 ELKEIGEMPKA 297 (316)
Q Consensus 287 ~W~~i~~~p~~ 297 (316)
+|+++..||..
T Consensus 242 ~W~~~~~~p~~ 252 (308)
T 1zgk_A 242 TWTFVAPMKHR 252 (308)
T ss_dssp EEEECCCCSSC
T ss_pred cEEECCCCCCC
Confidence 49999888853
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.92 E-value=2.5e-23 Score=178.06 Aligned_cols=239 Identities=14% Similarity=0.167 Sum_probs=174.2
Q ss_pred hhHHHhhhhHHHHHHhhcccccc----CCCCCeEEEEecCCCCCCCCCCceEEeeCCCCc---eeEccCCCCCC-cccee
Q 040781 37 DLASACYVSRSWNRAVFSSLRRV----NKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHV---WIEIKNNQPSS-FDFLL 108 (316)
Q Consensus 37 ~l~r~r~VcK~W~~li~s~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~---w~~~~~~~~~~-~~~~~ 108 (316)
++..+-...+.|..+..-+..+. ......+++++... .....+.++.||+..++ |..++ +++. .....
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~d~~~~~~~~W~~~~--~~p~~r~~~~ 107 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD--GRSRLSSVECLDYTADEDGVWYSVA--PMNVRRGLAG 107 (301)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC--SSCBCCCEEEEETTCCTTCCCEEEC--CCSSCCBSCE
T ss_pred EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC--CCccCceEEEEECCCCCCCeeEECC--CCCCCcccee
Confidence 34444445566655543221111 11234566666654 33455678999999999 99996 4432 22334
Q ss_pred eeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC
Q 040781 109 RSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT 182 (316)
Q Consensus 109 ~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~ 182 (316)
.+..++.||++||. +++++|||.+++|..+++++.+|..++.+..+.+||++||..... ....+++||+.+++
T Consensus 108 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 108 ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGH 186 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTE
T ss_pred EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCc
Confidence 44457999999982 689999999999999999999999999999999999999976543 56779999999999
Q ss_pred eeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCE
Q 040781 183 WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDR 257 (316)
Q Consensus 183 W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~ 257 (316)
|+.+.++|. ++..+ ++++.++.+|++||. .+.++.||+.+++|+.+..+|.+ + ..+.++..+|+
T Consensus 187 W~~~~~~p~--~r~~~----~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~~~ 255 (301)
T 2vpj_A 187 WTNVTPMAT--KRSGA----GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP----R-CYVGATVLRGR 255 (301)
T ss_dssp EEEECCCSS--CCBSC----EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC----C-BSCEEEEETTE
T ss_pred EEeCCCCCc--ccccc----eEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc----c-cceeEEEECCE
Confidence 999988877 66666 788889999999984 45789999999999998876665 2 23345566999
Q ss_pred EEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 258 LIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 258 L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
|+++||....... -.+|.+| ..+ ++|+++..||.
T Consensus 256 i~v~GG~~~~~~~--~~v~~yd--~~~-~~W~~~~~~~~ 289 (301)
T 2vpj_A 256 LYAIAGYDGNSLL--SSIECYD--PII-DSWEVVTSMGT 289 (301)
T ss_dssp EEEECCBCSSSBE--EEEEEEE--TTT-TEEEEEEEEEE
T ss_pred EEEEcCcCCCccc--ccEEEEc--CCC-CeEEEcCCCCc
Confidence 9999986544322 4567776 333 34999988875
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.92 E-value=1.8e-23 Score=180.14 Aligned_cols=198 Identities=14% Similarity=0.089 Sum_probs=154.9
Q ss_pred eEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecCCCCCCCCCCE
Q 040781 83 AHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVDAPRVWRTDPV 149 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~~~~~~~~ 149 (316)
++.||+..++|...+. |.+ +......+..++.||++||. +.+++|||.+++|..+++++.+|..++
T Consensus 15 ~~~yd~~~~~W~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 93 (315)
T 4asc_A 15 AVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG 93 (315)
T ss_dssp EEEEETTTTEEEEEEC-CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred eEEECCCCCeEecCCC-CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence 7899999999986432 332 23333445567899999882 348999999999999999999999999
Q ss_pred EEEECCEEEEEcCcCC--CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceE
Q 040781 150 VALVGDKVVVAGGACD--FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGIT 221 (316)
Q Consensus 150 ~~~~~~~v~~~gg~~~--~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i 221 (316)
++.++.++|++||... .......+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||. .+.+
T Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 94 LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGH----TVLSHMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSC----EEEEETTEEEEECCBCTTSCBCCCE
T ss_pred EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccce----eEEEECCEEEEEeCCCCCCcccceE
Confidence 9999999999999642 23466789999999999999998888 77777 788899999999985 3578
Q ss_pred EEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781 222 VSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA 297 (316)
Q Consensus 222 ~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~ 297 (316)
+.||+.+++|+.++.+|.+ ...+..+..+++|+++||...... .-.+|.+| ..+ ++|+++..||..
T Consensus 168 ~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~yd--~~~-~~W~~~~~~p~~ 233 (315)
T 4asc_A 168 CVYDPKKFEWKELAPMQTA-----RSLFGATVHDGRIIVAAGVTDTGL--TSSAEVYS--ITD-NKWAPFEAFPQE 233 (315)
T ss_dssp EEEETTTTEEEECCCCSSC-----CBSCEEEEETTEEEEEEEECSSSE--EEEEEEEE--TTT-TEEEEECCCSSC
T ss_pred EEEeCCCCeEEECCCCCCc-----hhceEEEEECCEEEEEeccCCCCc--cceEEEEE--CCC-CeEEECCCCCCc
Confidence 9999999999999877665 233445567999999998765432 24567777 433 349999988854
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.92 E-value=3.3e-23 Score=177.80 Aligned_cols=212 Identities=13% Similarity=0.110 Sum_probs=162.8
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC-------ceeeeecCCCCce
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAW 135 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w 135 (316)
..+++++... ......++.||+..++|..++ +++. ......+..++.||++||. +++++|||.+++|
T Consensus 56 ~~lyv~GG~~---~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 56 NVVYILGGSQ---LFPIKRMDCYNVVKDSWYSKL--GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TEEEEECCBS---SSBCCEEEEEETTTTEEEEEE--CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CEEEEEeCCC---CCCcceEEEEeCCCCeEEECC--CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 3455665543 224566889999999999986 4432 2233444567999999983 5799999999999
Q ss_pred eecCCCCCCCCCCEEEEECCEEEEEcCcCCCCC---CCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEE
Q 040781 136 HHVDAPRVWRTDPVVALVGDKVVVAGGACDFED---DPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLY 212 (316)
Q Consensus 136 ~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~---~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y 212 (316)
..+++++.+|..++.+..++++|++||...... ....+++||+.+++|+.+.++|. ++..+ ++++.++.+|
T Consensus 131 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~i~ 204 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE--ARKNH----GLVFVKDKIF 204 (306)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEE
T ss_pred EeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc--hhhcc----eEEEECCEEE
Confidence 999999999999999999999999999755432 16789999999999999998887 77766 7888899999
Q ss_pred EEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhh
Q 040781 213 VTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEE 287 (316)
Q Consensus 213 ~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~ 287 (316)
++||. .+.+.+||+.+++|+.+..+|.+ + ....++..+++|+++||....... -++|.+| ... ++
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~~~i~v~GG~~~~~~~--~~~~~yd--~~~-~~ 274 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK----G-VTVKCAAVGSIVYVLAGFQGVGRL--GHILEYN--TET-DK 274 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSCC----B-SCCEEEEETTEEEEEECBCSSSBC--CEEEEEE--TTT-TE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC----c-cceeEEEECCEEEEEeCcCCCeee--eeEEEEc--CCC-Ce
Confidence 99984 35789999999999999877665 2 234455669999999987654333 3567777 333 34
Q ss_pred hhhcCCCcH
Q 040781 288 LKEIGEMPK 296 (316)
Q Consensus 288 W~~i~~~p~ 296 (316)
|+++..||.
T Consensus 275 W~~~~~~~~ 283 (306)
T 3ii7_A 275 WVANSKVRA 283 (306)
T ss_dssp EEEEEEEEC
T ss_pred EEeCCCccc
Confidence 999988773
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.92 E-value=2.9e-23 Score=177.79 Aligned_cols=211 Identities=16% Similarity=0.214 Sum_probs=162.5
Q ss_pred eEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCceee
Q 040781 65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHH 137 (316)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~ 137 (316)
.+++++... . .....+++||+..++|..++ +++. ......+..++.||++||. +++++|||.+++|..
T Consensus 17 ~i~v~GG~~--~-~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 17 LMVVVGGQA--P-KAIRSVECYDFKEERWHQVA--ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp EEEEECCBS--S-SBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEEEECCCC--C-CCCCcEEEEcCcCCcEeEcc--cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 566666544 2 24456889999999999985 4432 2223334467999999983 579999999999999
Q ss_pred cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc
Q 040781 138 VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY 217 (316)
Q Consensus 138 lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~ 217 (316)
+++++.+|..++++.+++++|++||..... ....+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||.
T Consensus 92 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~ 164 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSV----GVGVVGGLLYAVGGY 164 (302)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEECCE
T ss_pred CCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCc----eEEEECCEEEEEeCC
Confidence 999999999999999999999999975442 45679999999999999998887 67766 788889999999983
Q ss_pred -------cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh
Q 040781 218 -------SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE 290 (316)
Q Consensus 218 -------~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~ 290 (316)
.+.++.||+.+++|+.+..+|.+ ...+.++..+++|+++||....... -++|.+| ..+ ++|++
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~yd--~~~-~~W~~ 234 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-----RSGAGVGVLNNLLYAVGGHDGPLVR--KSVEVYD--PTT-NAWRQ 234 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCBSSSSBC--CCEEEEE--TTT-TEEEE
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccc-----cccccEEEECCEEEEECCCCCCccc--ceEEEEe--CCC-CCEee
Confidence 35689999999999998867665 2334556679999999987543322 3456776 333 34999
Q ss_pred cCCCcHH
Q 040781 291 IGEMPKA 297 (316)
Q Consensus 291 i~~~p~~ 297 (316)
+..||..
T Consensus 235 ~~~~~~~ 241 (302)
T 2xn4_A 235 VADMNMC 241 (302)
T ss_dssp ECCCSSC
T ss_pred CCCCCCc
Confidence 9988853
No 9
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.92 E-value=4.2e-23 Score=176.69 Aligned_cols=213 Identities=17% Similarity=0.238 Sum_probs=163.5
Q ss_pred CeEEEEec-CCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCc-
Q 040781 64 PWLLLHTQ-SQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLA- 134 (316)
Q Consensus 64 ~~l~~~~~-~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~- 134 (316)
..+++++. .. .......++.||+..++|..++ +++. ......+..++.||++||. +++++||+.+++
T Consensus 15 ~~i~~~GG~~~--~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 15 EVLLVVGGFGS--QQSPIDVVEKYDPKTQEWSFLP--SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp EEEEEECCEET--TTEECCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CEEEEEeCccC--CCcceeEEEEEcCCCCeEEeCC--CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 34666666 33 2234566889999999999986 3332 2233444567899999983 579999999999
Q ss_pred --eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEE
Q 040781 135 --WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLY 212 (316)
Q Consensus 135 --w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y 212 (316)
|..+++++.+|..++++..++++|++||..... ....+++||+.+++|+.+.++|. ++..+ ++++.++.+|
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iy 163 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQT--AREGA----GLVVASGVIY 163 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSS--CCBSC----EEEEETTEEE
T ss_pred CeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCC--Ccccc----eEEEECCEEE
Confidence 999999999999999999999999999976543 46789999999999999988877 66666 7788899999
Q ss_pred EEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhh
Q 040781 213 VTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEE 287 (316)
Q Consensus 213 ~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~ 287 (316)
++||. .+.+.+||+.+++|+.+..+|.+ ...+.++..+++|+++||....... -++|.+| ..+ ++
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG~~~~~~~--~~v~~yd--~~~-~~ 233 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-----RSGAGVALLNDHIYVVGGFDGTAHL--SSVEAYN--IRT-DS 233 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCBCSSSBC--CCEEEEE--TTT-TE
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-----cccceEEEECCEEEEEeCCCCCccc--ceEEEEe--CCC-Cc
Confidence 99983 35789999999999998866665 2334556679999999987654333 3456666 323 34
Q ss_pred hhhcCCCcHH
Q 040781 288 LKEIGEMPKA 297 (316)
Q Consensus 288 W~~i~~~p~~ 297 (316)
|+++..||..
T Consensus 234 W~~~~~~p~~ 243 (301)
T 2vpj_A 234 WTTVTSMTTP 243 (301)
T ss_dssp EEEECCCSSC
T ss_pred EEECCCCCCc
Confidence 9999888854
No 10
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.91 E-value=3.8e-23 Score=178.17 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=154.7
Q ss_pred CceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC---------ceeeeecCCCCceeecCCCCCCCCCCEE
Q 040781 81 TTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS---------KLSFSFDPLHLAWHHVDAPRVWRTDPVV 150 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~---------~~~~v~np~t~~w~~lp~~~~~~~~~~~ 150 (316)
..++.||+..++|..++ +++. +.....+..++.||++||. +++++|||.+++|..++++|.+|..++.
T Consensus 67 ~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 144 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMP--PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTV 144 (315)
T ss_dssp EEEEEEETTTTEEEECC--CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred cceEEecCCCCeEEECC--CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeE
Confidence 34778999999999986 4432 2233444567999999982 5799999999999999999999999999
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEee
Q 040781 151 ALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFD 225 (316)
Q Consensus 151 ~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD 225 (316)
+..+++||++||..........+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||. .+.+.+||
T Consensus 145 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 145 LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--ARSLF----GATVHDGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp EEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CCBSC----EEEEETTEEEEEEEECSSSEEEEEEEEE
T ss_pred EEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--chhce----EEEEECCEEEEEeccCCCCccceEEEEE
Confidence 99999999999985444467789999999999999998887 77777 788889999999984 34689999
Q ss_pred CCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCC----C---cceeeEEEeeccCCchhhhhhcCCCc
Q 040781 226 PSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAE----D---VKSLKIWQVNIKGGSLEELKEIGEMP 295 (316)
Q Consensus 226 ~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~----~---~~~~~iw~l~~~~~~~~~W~~i~~~p 295 (316)
+++++|+.+..+|.+ ...+.++..+|+|+++||..... . ...-++|.+| ..+ ++|+++...|
T Consensus 219 ~~~~~W~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd--~~~-~~W~~~~~~~ 287 (315)
T 4asc_A 219 ITDNKWAPFEAFPQE-----RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYN--EEE-KKWEGVLREI 287 (315)
T ss_dssp TTTTEEEEECCCSSC-----CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE--TTT-TEEEEEESCS
T ss_pred CCCCeEEECCCCCCc-----ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEec--CCC-ChhhhhccCC
Confidence 999999998876655 23345556799999999864211 0 1225678888 433 3499985544
No 11
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.91 E-value=5.7e-23 Score=177.32 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=152.9
Q ss_pred eEEeeCCCCceeEccCCCC-CCccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecCCCCCCCCCCE
Q 040781 83 AHAYDARSHVWIEIKNNQP-SSFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVDAPRVWRTDPV 149 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~-~~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~~~~~~~~ 149 (316)
.+.||+..++|...+. +. .+......+..++.||++||. +.+++|||.+++|..+++++.+|..++
T Consensus 26 ~~~yd~~~~~W~~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 26 AVAYDPMENECYLTAL-AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEETTTTEEEEEEE-CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred eEEECCCCCceecccC-CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 6899999999988532 32 223333445567899999982 128899999999999999999999999
Q ss_pred EEEECCEEEEEcCcCC-CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceEE
Q 040781 150 VALVGDKVVVAGGACD-FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGITV 222 (316)
Q Consensus 150 ~~~~~~~v~~~gg~~~-~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i~ 222 (316)
++.++.+||++||... .......+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||. .+.++
T Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGH----NVISHNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESC----EEEEETTEEEEECCEESSSCBCCCEE
T ss_pred eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--ccccc----EEEEECCEEEEEcCCCCCCCccceEE
Confidence 9999999999999753 22355779999999999999998887 66666 777899999999984 35689
Q ss_pred EeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781 223 SFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA 297 (316)
Q Consensus 223 ~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~ 297 (316)
.||+.+++|+.++.+|.+ ...+.++..+++|+++||...... .-.+|.+| ..+ ++|+++..||..
T Consensus 179 ~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~yd--~~~-~~W~~~~~~p~~ 243 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKTP-----RSMFGVAIHKGKIVIAGGVTEDGL--SASVEAFD--LKT-NKWEVMTEFPQE 243 (318)
T ss_dssp EEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEEEEEETTEE--EEEEEEEE--TTT-CCEEECCCCSSC
T ss_pred EEcCCCCEEEECCCCCCC-----cccceEEEECCEEEEEcCcCCCCc--cceEEEEE--CCC-CeEEECCCCCCc
Confidence 999999999998866665 233445567999999998654322 24566666 333 349999988864
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.90 E-value=2.2e-22 Score=173.67 Aligned_cols=194 Identities=16% Similarity=0.215 Sum_probs=152.0
Q ss_pred ceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC--------ceeeeecCCCCceeecCCCCCCCCCCEEEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS--------KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL 152 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~--------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~ 152 (316)
.++.||+..++|..++ +++. +.....+..++.||++||. +++++|||.+++|..++++|.+|..++++.
T Consensus 79 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLP--PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEEETTTTEEEECS--CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred cEEEEeCCCCcEEECC--CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence 3788999999999986 4432 2233344457899999873 579999999999999999999999999999
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCC
Q 040781 153 VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPS 227 (316)
Q Consensus 153 ~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~ 227 (316)
.+++||++||..........+++||+.+++|+.+.++|. ++..+ ++++.++.+|++||. .+.+..||++
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT--PRSMF----GVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC--Ccccc----eEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence 999999999975444456789999999999999998887 77666 788899999999983 3568999999
Q ss_pred CCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCC-------CcceeeEEEeeccCCchhhhhhc
Q 040781 228 TKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAE-------DVKSLKIWQVNIKGGSLEELKEI 291 (316)
Q Consensus 228 ~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~-------~~~~~~iw~l~~~~~~~~~W~~i 291 (316)
+++|+.+..+|.+ + ..+.++..+++|+++||..... ....-++|.+| ..+ ++|+++
T Consensus 231 ~~~W~~~~~~p~~----r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd--~~~-~~W~~~ 293 (318)
T 2woz_A 231 TNKWEVMTEFPQE----R-SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE--DDK-KEWAGM 293 (318)
T ss_dssp TCCEEECCCCSSC----C-BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE--TTT-TEEEEE
T ss_pred CCeEEECCCCCCc----c-cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe--CCC-CEehhh
Confidence 9999999877665 2 2345567799999999875421 11235678888 433 349988
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.88 E-value=2.5e-21 Score=169.67 Aligned_cols=215 Identities=15% Similarity=0.120 Sum_probs=152.6
Q ss_pred CeEEEEecCCCCCCCCCCceEEeeCC--CCceeEccCCCCC--CccceeeeecCCEEEEEcCC-----------ceeeee
Q 040781 64 PWLLLHTQSQRTMAPYLTTAHAYDAR--SHVWIEIKNNQPS--SFDFLLRSSHSTLLYTLSPS-----------KLSFSF 128 (316)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~d~~--~~~w~~~~~~~~~--~~~~~~~~s~~~~l~~~gg~-----------~~~~v~ 128 (316)
..+++++... . ..++.||+. .++|..++ +++ ++.....+..++.||++||. +++++|
T Consensus 20 ~~iyv~GG~~--~----~~~~~~d~~~~~~~W~~~~--~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~y 91 (357)
T 2uvk_A 20 DTVYIGLGSA--G----TAWYKLDTQAKDKKWTALA--AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY 91 (357)
T ss_dssp TEEEEECGGG--T----TCEEEEETTSSSCCEEECC--CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEE
T ss_pred CEEEEEeCcC--C----CeEEEEccccCCCCeeECC--CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEE
Confidence 4455665543 2 348899997 48999996 443 33333445567999999985 468999
Q ss_pred cCCCCceeecCCCC-CCCCCCEEEEECCEEEEEcCcCCCC---------------------------------CCCcEEE
Q 040781 129 DPLHLAWHHVDAPR-VWRTDPVVALVGDKVVVAGGACDFE---------------------------------DDPLAVE 174 (316)
Q Consensus 129 np~t~~w~~lp~~~-~~~~~~~~~~~~~~v~~~gg~~~~~---------------------------------~~~~~v~ 174 (316)
||.+++|..+++++ .+|..++++..+++||++||..... .....++
T Consensus 92 d~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 92 NPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp ETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred eCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 99999999999877 8888888888999999999964321 1357899
Q ss_pred EEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceEEEeeC--CCCCccCCCcCCCCCcccce
Q 040781 175 MYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGITVSFDP--STKGWSGPFHLRQFDHEKKV 246 (316)
Q Consensus 175 vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i~~yD~--~~~~W~~~~~l~~~~~~~~~ 246 (316)
+||+.+++|+.+.++|. ..+..+ ++++.++.+|++||. .+.++.||+ ++++|+.+..++.| ...
T Consensus 172 ~yd~~~~~W~~~~~~p~-~~~~~~----~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~ 243 (357)
T 2uvk_A 172 SFDPSTQQWSYAGESPW-YGTAGA----AVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGV 243 (357)
T ss_dssp EEETTTTEEEEEEECSS-CCCBSC----EEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCC
T ss_pred EEeCCCCcEEECCCCCC-CCcccc----cEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---ccc
Confidence 99999999999987775 123335 778889999999983 456888876 89999999877666 333
Q ss_pred eeeeeEeeCCEEEEEecCCCCC---------------CcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781 247 FYSVITFANDRLIAVGLTGEAE---------------DVKSLKIWQVNIKGGSLEELKEIGEMPKA 297 (316)
Q Consensus 247 ~~~~l~~~~g~L~v~g~~~~~~---------------~~~~~~iw~l~~~~~~~~~W~~i~~~p~~ 297 (316)
..+.++..+++|+++||..... ......+|.+| ..+ ++|+++..||..
T Consensus 244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd--~~~-~~W~~~~~~p~~ 306 (357)
T 2uvk_A 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL--WHN-GKWDKSGELSQG 306 (357)
T ss_dssp BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE--CC----CEEEEECSSC
T ss_pred ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe--cCC-CceeeCCCCCCC
Confidence 4445667899999999854221 11113455665 333 349999888854
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.86 E-value=1.6e-20 Score=164.43 Aligned_cols=203 Identities=15% Similarity=0.153 Sum_probs=141.1
Q ss_pred CCCceEEeeCCCCceeEccCCCCCCc--cceeeeecCCEEEEEcCC----------------------------------
Q 040781 79 YLTTAHAYDARSHVWIEIKNNQPSSF--DFLLRSSHSTLLYTLSPS---------------------------------- 122 (316)
Q Consensus 79 ~~~~~~~~d~~~~~w~~~~~~~~~~~--~~~~~~s~~~~l~~~gg~---------------------------------- 122 (316)
..++++.||+..++|..++ +++|. ........++.||++||.
T Consensus 84 ~~~~v~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLM--SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp ECCCEEEEETTTTEEEECS--CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred eeccEEEEeCCCCcEEECC--CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 3566899999999999996 44322 222334467999999983
Q ss_pred ------ceeeeecCCCCceeecCCCCCCCCC-CEEEEECCEEEEEcCcCCCCCCCcEEEEEeC--CCCCeeecCCCCccc
Q 040781 123 ------KLSFSFDPLHLAWHHVDAPRVWRTD-PVVALVGDKVVVAGGACDFEDDPLAVEMYSV--DTRTWEICQSMPAVL 193 (316)
Q Consensus 123 ------~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~--~t~~W~~~~~~p~~~ 193 (316)
+++++|||.+++|..+++++.++.. ++++..+.+||++||..........+++||. .+++|+.+.++|...
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~ 241 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD 241 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc
Confidence 4799999999999999888876544 8888899999999997543334566888986 899999998876522
Q ss_pred ccCccccceeEEEeCCEEEEEeccc----------------------ceEEEeeCCCCCccCCCcCCCCCcccceeeeee
Q 040781 194 KDSAASTWLSVAVNSRQLYVTEKYS----------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI 251 (316)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~y~~~~~~----------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l 251 (316)
.+..+ ++++.++.+|++||.. ..+.+||+++++|+.+..+|.+ + ..+..
T Consensus 242 ~~~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r-~~~~~ 312 (357)
T 2uvk_A 242 GVAGG----FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG----R-AYGVS 312 (357)
T ss_dssp CCBSC----EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC----C-BSSEE
T ss_pred ccccc----eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC----c-cccee
Confidence 33344 6788899999999842 3578999999999999877766 2 22445
Q ss_pred EeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 252 TFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 252 ~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
+..+++|+++||...... ..-++|.++ -.+ ++|.+....|.
T Consensus 313 ~~~~~~i~v~GG~~~~~~-~~~~v~~l~--~~~-~~~~~~~~~~~ 353 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGK-AVTDSVLIT--VKD-NKVTVQNLEHH 353 (357)
T ss_dssp EEETTEEEEEEEECGGGC-EEEEEEEEE--C-C-CSCEEEC----
T ss_pred EEeCCEEEEEeeeCCCCC-EeeeEEEEE--EcC-cEeEeeecccc
Confidence 667999999999754322 124556555 222 34988766654
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.82 E-value=7.4e-19 Score=166.46 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=151.2
Q ss_pred eEEEEecCCCCCCCCCCceEEeeCCCCceeEccC-CC---CC-Cccceeeeec--CCEEEEEcCC-------ceeeeecC
Q 040781 65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKN-NQ---PS-SFDFLLRSSH--STLLYTLSPS-------KLSFSFDP 130 (316)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~-~~---~~-~~~~~~~~s~--~~~l~~~gg~-------~~~~v~np 130 (316)
.++++++.. . ...+.++.||+..++|..++. +| ++ ++.....+.. ++.||++||. +++++||+
T Consensus 399 ~iyv~GG~~--~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 399 DVFYMGGSN--P-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CEEEECCBS--S-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred EEEEECCCC--C-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666654 3 456678999999999998862 11 22 2222333445 8899999983 57999999
Q ss_pred CCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEE
Q 040781 131 LHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAV 206 (316)
Q Consensus 131 ~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~ 206 (316)
.+++|..+++++.+|..++.+.+ +++||++||..... .+++||+.+++|+.+.. +|. ++..+ ++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~--~r~~~----~a~v 545 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQ--NSLVS----AGLE 545 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGG--SCCBS----CEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCC--cccce----eEEE
Confidence 99999999999999999999886 99999999975543 79999999999999975 555 55555 4444
Q ss_pred eC---CEEEEEecc-------cceEEEeeCCCCC------ccCCCcCCCCCcccceeeeeeEeeC-CEEEEEecCCCCCC
Q 040781 207 NS---RQLYVTEKY-------SGITVSFDPSTKG------WSGPFHLRQFDHEKKVFYSVITFAN-DRLIAVGLTGEAED 269 (316)
Q Consensus 207 ~~---~~~y~~~~~-------~~~i~~yD~~~~~------W~~~~~l~~~~~~~~~~~~~l~~~~-g~L~v~g~~~~~~~ 269 (316)
.+ +.+|++||. .+.+++||+.+++ |..+..+|+. ....+.++..+ |+|+++||......
T Consensus 546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~----~R~~~~~~~~~~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF----QRYGSQIKYITPRKLLIVGGTSPSGL 621 (695)
T ss_dssp EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG----CCBSCEEEEEETTEEEEECCBCSSCC
T ss_pred EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC----CcccceEEEeCCCEEEEECCccCCCC
Confidence 34 889999985 3579999999999 7776654322 22334445556 99999998654321
Q ss_pred -cceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781 270 -VKSLKIWQVNIKGGSLEELKEIGEMPKAL 298 (316)
Q Consensus 270 -~~~~~iw~l~~~~~~~~~W~~i~~~p~~~ 298 (316)
...-++|.+| ..+ ++|+.+ .+|...
T Consensus 622 ~~~~~~v~~yd--~~t-~~W~~~-~~p~~~ 647 (695)
T 2zwa_A 622 FDRTNSIISLD--PLS-ETLTSI-PISRRI 647 (695)
T ss_dssp CCTTTSEEEEE--TTT-TEEEEC-CCCHHH
T ss_pred CCCCCeEEEEE--CCC-CeEEEe-eccccc
Confidence 1124456666 333 349854 667665
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.75 E-value=3.1e-17 Score=155.35 Aligned_cols=175 Identities=9% Similarity=0.034 Sum_probs=128.9
Q ss_pred ecCCEEEEEcCC-----ceeeeecCCCCceeecC-C-----CCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEe
Q 040781 111 SHSTLLYTLSPS-----KLSFSFDPLHLAWHHVD-A-----PRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYS 177 (316)
Q Consensus 111 s~~~~l~~~gg~-----~~~~v~np~t~~w~~lp-~-----~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~ 177 (316)
..++.||++||. +++++|||.+++|..++ + ++.+|..++++.+ ++++|++||..........+++||
T Consensus 395 ~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 395 VAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp ECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred EECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 367889999984 67999999999999997 5 6888999999999 999999999866543567799999
Q ss_pred CCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccc--eEEEeeCCCCCccCCCc---CCCCCcccceeeeee
Q 040781 178 VDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSG--ITVSFDPSTKGWSGPFH---LRQFDHEKKVFYSVI 251 (316)
Q Consensus 178 ~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~--~i~~yD~~~~~W~~~~~---l~~~~~~~~~~~~~l 251 (316)
+.+++|+.+.++|. ++..+ ++++. ++.+|++||..+ .+++||+.+++|..+.. +|.+ +...+.+
T Consensus 475 ~~t~~W~~~~~~p~--~R~~h----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~----r~~~~a~ 544 (695)
T 2zwa_A 475 MKTREWSMIKSLSH--TRFRH----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN----SLVSAGL 544 (695)
T ss_dssp TTTTEEEECCCCSB--CCBSC----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS----CCBSCEE
T ss_pred CCCCcEEECCCCCC--Ccccc----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc----ccceeEE
Confidence 99999999998887 77777 77775 999999999543 68999999999998875 4444 2222223
Q ss_pred E-eeC-CEEEEEecCCCCCCcceeeEEEeeccCCch---hhhhhcCCCc
Q 040781 252 T-FAN-DRLIAVGLTGEAEDVKSLKIWQVNIKGGSL---EELKEIGEMP 295 (316)
Q Consensus 252 ~-~~~-g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~---~~W~~i~~~p 295 (316)
+ ..+ ++||++||.........-++|.++.+.... -+|+++..+|
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p 593 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP 593 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence 2 223 899999987443211123445555113220 0188887765
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.73 E-value=8e-17 Score=152.07 Aligned_cols=204 Identities=14% Similarity=0.109 Sum_probs=139.6
Q ss_pred ceEEeeCCCCceeEccCCCCC-Cccce---eeeecCCEEEEEcCC--ceeeeecCCCCceeecCCCCCCCCCCEEEEE-C
Q 040781 82 TAHAYDARSHVWIEIKNNQPS-SFDFL---LRSSHSTLLYTLSPS--KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-G 154 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~-~~~~~---~~~s~~~~l~~~gg~--~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~ 154 (316)
.++.||+..++|..++ +++ ++... .....++.||++||. .++++|||.+++|.++++++.+|..++.+.+ +
T Consensus 220 ~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD 297 (656)
T ss_dssp EEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred EEEEEeCCCCcEEeCc--ccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence 4678999999999875 332 11111 233457899999984 5799999999999999999999999998888 9
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-----CCCcccc-----cC----------c-----------------
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-----SMPAVLK-----DS----------A----------------- 197 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-----~~p~~~~-----~~----------~----------------- 197 (316)
++||++||..+.......+++||+.+++|+.+. +++.... .. .
T Consensus 298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 999999995433335677999999999999862 2222100 00 0
Q ss_pred ------------------cccceeEEE----eCCEEEEEeccc--------c---eEEEeeCCCCCccCCC--cCCCCCc
Q 040781 198 ------------------ASTWLSVAV----NSRQLYVTEKYS--------G---ITVSFDPSTKGWSGPF--HLRQFDH 242 (316)
Q Consensus 198 ------------------~~~~~~~~~----~~~~~y~~~~~~--------~---~i~~yD~~~~~W~~~~--~l~~~~~ 242 (316)
.....+.++ .++.+|++||.. + .|..||+.+++|..+. .+|.+
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-- 455 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-- 455 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC--
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC--
Confidence 000112333 489999999842 2 6889999999998875 56655
Q ss_pred ccceeeeeeEeeCCEEEEEecCCCC------CCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781 243 EKKVFYSVITFANDRLIAVGLTGEA------EDVKSLKIWQVNIKGGSLEELKEIGEMPK 296 (316)
Q Consensus 243 ~~~~~~~~l~~~~g~L~v~g~~~~~------~~~~~~~iw~l~~~~~~~~~W~~i~~~p~ 296 (316)
+......+..+|+|+++||.... .....+++|..+ . ++|+++..||.
T Consensus 456 --R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t---~~W~~~~~~~~ 508 (656)
T 1k3i_A 456 --RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--Q---DTFYKQNPNSI 508 (656)
T ss_dssp --CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--G---TEEEECCCCSS
T ss_pred --cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--C---CceeecCCCCC
Confidence 22223333448999999986421 122345555554 3 34999988774
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.63 E-value=4.2e-15 Score=140.34 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=106.9
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeeec-CCEEEEEcCC------------ceeeeecCCCCceeecCCCCCCCCCC-
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSH-STLLYTLSPS------------KLSFSFDPLHLAWHHVDAPRVWRTDP- 148 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~-~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~~~~~~~- 148 (316)
..+||+..++|..+. |++.......... ++.||++||. ..+++|||.|++|..+++++.++..+
T Consensus 168 ~~~~dp~~~~W~~~~--~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~ 245 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTI--DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC 245 (656)
T ss_dssp CCCCCTTSCEEEEEE--ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred cccCCCCCCeeeeec--cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence 456899999999875 4433222222232 7899999862 26889999999999998777766544
Q ss_pred -EEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecc------cc
Q 040781 149 -VVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKY------SG 219 (316)
Q Consensus 149 -~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~------~~ 219 (316)
+.++ .+++||++||.... .+++||+.+++|+.+.++|. ++..+ ++++. ++++|++||. .+
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~--~R~~~----s~~~~~dg~iyv~GG~~~~~~~~~ 314 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV--ARGYQ----SSATMSDGRVFTIGGSWSGGVFEK 314 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS--CCSSC----EEEECTTSCEEEECCCCCSSSCCC
T ss_pred ccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc--ccccc----ceEEecCCeEEEEeCcccCCcccc
Confidence 3333 57899999996432 59999999999999998887 77766 77777 9999999992 25
Q ss_pred eEEEeeCCCCCccCC
Q 040781 220 ITVSFDPSTKGWSGP 234 (316)
Q Consensus 220 ~i~~yD~~~~~W~~~ 234 (316)
.+.+||+.+++|..+
T Consensus 315 ~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSL 329 (656)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred cceEeCCCCCcceeC
Confidence 689999999999876
No 19
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.16 E-value=2.7e-11 Score=74.47 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 15 NTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 15 ~~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
...+..||+|++.+||++||..++.++++|||+|++++.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~ 46 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Confidence 45689999999999999999999999999999999999876
No 20
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.86 E-value=1.2e-09 Score=91.02 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=38.7
Q ss_pred CCCCCCCcHHHHHHHHhcCChhhhH-HHhhhhHHHHHHhhcc
Q 040781 15 NTNNSIVHGDILEAILSQVPLIDLA-SACYVSRSWNRAVFSS 55 (316)
Q Consensus 15 ~~~~~~Lp~dll~~IL~rLp~~~l~-r~r~VcK~W~~li~s~ 55 (316)
+..+..||+||+.+||++||+++|+ +|++|||+|++++.++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh
Confidence 3568899999999999999999999 9999999999999998
No 21
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.67 E-value=2.1e-06 Score=77.00 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=35.3
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhc
Q 040781 18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFS 54 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s 54 (316)
+..||+||+.+||+.||+++|+++..|||+|+.++.+
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 5679999999999999999999999999999999987
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.52 E-value=5.8e-06 Score=73.76 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 16 TNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 16 ~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
..+..||+|++..||++|+..+|.++.+|||+|+.++.+.
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~ 56 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN 56 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch
Confidence 4578899999999999999999999999999999999876
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.52 E-value=3e-05 Score=68.96 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=35.4
Q ss_pred CCCCcHH----HHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVHGD----ILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp~d----ll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
+..||+| |+..||+.|+..+|.++.+|||+|+.++.++
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh
Confidence 5679999 9999999999999999999999999999765
No 24
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.85 E-value=7.8e-06 Score=70.17 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 14 SNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 14 ~~~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
++.+|..||+|++.+||.+|+..++.+++.|||+|+.++.++
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~ 46 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence 356799999999999999999999999999999999999765
No 25
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.72 E-value=1.9e-05 Score=65.24 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781 18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS 55 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~ 55 (316)
++.||+||+..||+.|++++|.++-+|||+||.++.++
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Confidence 66899999999999999999999999999999999998
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.30 E-value=0.00011 Score=68.04 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCCCcHHHHHHHHhcCC-hhhhHHHhhhhHHHHHHh
Q 040781 17 NNSIVHGDILEAILSQVP-LIDLASACYVSRSWNRAV 52 (316)
Q Consensus 17 ~~~~Lp~dll~~IL~rLp-~~~l~r~r~VcK~W~~li 52 (316)
.|+.||+|++.+||++|| .+++.+++.|||+|+.+.
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~ 41 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE 41 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 488999999999999999 999999999999999984
No 27
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.69 E-value=0.019 Score=46.38 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=73.1
Q ss_pred cCCEEEEEcCC---ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLSPS---KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~gg~---~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.++.||..+|. +.+.++|+.|++-..--+++......+++..+.++|+... ....+.+||..+.+=. ..
T Consensus 29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~tl~~~--~t 100 (243)
T 3mbr_X 29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLATLTPR--AR 100 (243)
T ss_dssp ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTTEEE--EE
T ss_pred ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCcCcEE--EE
Confidence 45788887764 6899999999987543233333344567778999999863 3366999999886532 22
Q ss_pred CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++. ..... +++..++.+|+..+ .+.|..+|+++.+
T Consensus 101 i~~--~~~Gw----glt~dg~~L~vSdg-s~~l~~iDp~t~~ 135 (243)
T 3mbr_X 101 FRY--PGEGW----ALTSDDSHLYMSDG-TAVIRKLDPDTLQ 135 (243)
T ss_dssp EEC--SSCCC----EEEECSSCEEEECS-SSEEEEECTTTCC
T ss_pred EeC--CCCce----EEeeCCCEEEEECC-CCeEEEEeCCCCe
Confidence 322 22234 77778899999987 6789999999865
No 28
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.66 E-value=0.00085 Score=62.04 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHhcC-ChhhhHHHhhhhHHHHHHhhc
Q 040781 18 NSIVHGDILEAILSQV-PLIDLASACYVSRSWNRAVFS 54 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rL-p~~~l~r~r~VcK~W~~li~s 54 (316)
...||+|++.+||++| |.+++.+++.|||+|+.+...
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 3579999999999999 899999999999999998543
No 29
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.59 E-value=0.27 Score=41.45 Aligned_cols=138 Identities=12% Similarity=0.004 Sum_probs=81.8
Q ss_pred CCceEEeeCCCCceeEcc-----CCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCce-eecCCCCCCCCCCEEEE
Q 040781 80 LTTAHAYDARSHVWIEIK-----NNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAW-HHVDAPRVWRTDPVVAL 152 (316)
Q Consensus 80 ~~~~~~~d~~~~~w~~~~-----~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~ 152 (316)
...+..+|+..++...-- ..++ ..........++.+|+.. +.+.+.++|+.|++. ..++....+ ..++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p---~~i~~ 91 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKL-GDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP---RYIHF 91 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCC-BSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE---EEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCccc-CccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC---cEEEE
Confidence 445777999887765310 0011 111111122467888876 457899999999876 445422222 23444
Q ss_pred -ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc--cccCccccceeEEEeCCEEEEEec-ccceEEEeeCCC
Q 040781 153 -VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV--LKDSAASTWLSVAVNSRQLYVTEK-YSGITVSFDPST 228 (316)
Q Consensus 153 -~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~--~~~~~~~~~~~~~~~~~~~y~~~~-~~~~i~~yD~~~ 228 (316)
-++++|+.... ...+.++|..+++-...-..... ...... ++++.++.+|+... ..+.|.++|+.+
T Consensus 92 ~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~----~i~~~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 92 LSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTE----QMVQYGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp EETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCC----CEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred eCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcc----eEEEECCEEEEEcCCCCCEEEEEECCC
Confidence 56788887642 35689999998764322111110 000122 56668999999975 467899999998
Q ss_pred CCc
Q 040781 229 KGW 231 (316)
Q Consensus 229 ~~W 231 (316)
.+.
T Consensus 162 ~~~ 164 (328)
T 3dsm_A 162 DKV 164 (328)
T ss_dssp TEE
T ss_pred CeE
Confidence 764
No 30
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.37 E-value=0.24 Score=41.76 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=78.6
Q ss_pred ceEEeeCCCCce-eEccCCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCcee-ecCCCCCC---CCCCEEEEECC
Q 040781 82 TAHAYDARSHVW-IEIKNNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAWH-HVDAPRVW---RTDPVVALVGD 155 (316)
Q Consensus 82 ~~~~~d~~~~~w-~~~~~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~-~lp~~~~~---~~~~~~~~~~~ 155 (316)
.+..+|+...+. ..++. . ........+.++.+|+.. ..+.+.++|+.|++.. .++..... ..-..++..+.
T Consensus 65 ~v~viD~~t~~~~~~i~~--~-~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~ 141 (328)
T 3dsm_A 65 VIFAIDINTFKEVGRITG--F-TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGK 141 (328)
T ss_dssp EEEEEETTTCCEEEEEEC--C-SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETT
T ss_pred EEEEEECcccEEEEEcCC--C-CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECC
Confidence 366788887665 33421 1 111223333456889887 5679999999998754 33321100 01123444788
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEeccc----------ceEEEe
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYS----------GITVSF 224 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~----------~~i~~y 224 (316)
++|+.... ....+.++|..+++....-.... ... ++++. +|.+|+..... +.|.++
T Consensus 142 ~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g~----~p~----~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 142 YVYVNCWS-----YQNRILKIDTETDKVVDELTIGI----QPT----SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp EEEEEECT-----TCCEEEEEETTTTEEEEEEECSS----CBC----CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred EEEEEcCC-----CCCEEEEEECCCCeEEEEEEcCC----Ccc----ceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 99988520 13569999999987544321111 111 33333 57888876532 679999
Q ss_pred eCCCCCcc
Q 040781 225 DPSTKGWS 232 (316)
Q Consensus 225 D~~~~~W~ 232 (316)
|+.+.+..
T Consensus 209 d~~t~~v~ 216 (328)
T 3dsm_A 209 DAETFTVE 216 (328)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99987643
No 31
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.35 E-value=0.066 Score=43.74 Aligned_cols=103 Identities=10% Similarity=-0.067 Sum_probs=71.0
Q ss_pred CCEEEEEcCC---ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 113 STLLYTLSPS---KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 113 ~~~l~~~gg~---~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
++.||..+|. +.+.++|+.|++-..--+++......+++..+.++|+... ....+.+||..+.+=.. .+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t~~~~~--ti 123 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRNLRQVR--SF 123 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTCCEEE--EE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCCEEEEEECccCcEEE--EE
Confidence 5788887653 5899999999986432233323333457778999999864 33669999998866332 22
Q ss_pred CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+. ..... +++..++.+|+..+ .+.|..+|+++.+
T Consensus 124 ~~--~~eG~----glt~dg~~L~~SdG-s~~i~~iDp~T~~ 157 (262)
T 3nol_A 124 NY--DGEGW----GLTHNDQYLIMSDG-TPVLRFLDPESLT 157 (262)
T ss_dssp EC--SSCCC----CEEECSSCEEECCS-SSEEEEECTTTCS
T ss_pred EC--CCCce----EEecCCCEEEEECC-CCeEEEEcCCCCe
Confidence 22 22233 67778889999987 5789999998765
No 32
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.20 E-value=0.055 Score=44.28 Aligned_cols=103 Identities=7% Similarity=-0.091 Sum_probs=70.8
Q ss_pred cCCEEEEEcCC-ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 112 HSTLLYTLSPS-KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 112 ~~~~l~~~gg~-~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
.++.||...|. +.+.++|+.|++-..-- ++......+++..+.++|+... ....+.+||..+.+=.. .++
T Consensus 63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~~~~--ti~ 133 (268)
T 3nok_A 63 HQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQRER--TTR 133 (268)
T ss_dssp ETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTEEEE--EEE
T ss_pred ECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCcEEE--EEe
Confidence 36888887764 57999999998754321 2322233457778899999864 33669999998865432 222
Q ss_pred cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..... +++..++.+|+..+ ++.|..+|+++.+
T Consensus 134 ~--~~eGw----GLt~Dg~~L~vSdG-s~~l~~iDp~T~~ 166 (268)
T 3nok_A 134 Y--SGEGW----GLCYWNGKLVRSDG-GTMLTFHEPDGFA 166 (268)
T ss_dssp C--SSCCC----CEEEETTEEEEECS-SSEEEEECTTTCC
T ss_pred C--CCcee----EEecCCCEEEEECC-CCEEEEEcCCCCe
Confidence 2 22233 77888999999986 6789999998865
No 33
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.12 E-value=0.057 Score=44.35 Aligned_cols=103 Identities=12% Similarity=0.021 Sum_probs=69.3
Q ss_pred CEEEEEcC---CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLSP---SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+.||+..| .+.+.++|+.|++-..--+++......+++..+.++|+..- ....+.+||..+.+ .+..++
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~~t~~--v~~~i~ 103 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDRRTLS--NIKNFT 103 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSEEEEEETTTTE--EEEEEE
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCEEEEEECCCCc--EEEEEE
Confidence 78898765 47999999999986442122222233366777889999864 33569999998753 333333
Q ss_pred cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+ ..... +++..++.+|+..+ .+.|..+|+++.+
T Consensus 104 ~g-~~~g~----glt~Dg~~l~vs~g-s~~l~viD~~t~~ 137 (266)
T 2iwa_A 104 HQ-MKDGW----GLATDGKILYGSDG-TSILYEIDPHTFK 137 (266)
T ss_dssp CC-SSSCC----EEEECSSSEEEECS-SSEEEEECTTTCC
T ss_pred CC-CCCeE----EEEECCCEEEEECC-CCeEEEEECCCCc
Confidence 31 12223 67777889999885 6789999998755
No 34
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.78 E-value=0.63 Score=37.92 Aligned_cols=146 Identities=8% Similarity=0.093 Sum_probs=76.7
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
..|.+|+.. +.+.+.+||+..+....+........-..++.. ++++|+.... ...+.+||.....-..+...
T Consensus 130 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~ 203 (286)
T 1q7f_A 130 NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGE 203 (286)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCT
T ss_pred CCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccC
Confidence 345677765 457899999866554444211111111133332 3678877532 24688999865433333211
Q ss_pred CcccccCccccceeEEEe-CCEEEEEecccc-eEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCC
Q 040781 190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSG-ITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEA 267 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~-~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~ 267 (316)
.. ..... ++++. +|.+|+.+...+ .|..||+..+.-..+. .... ...........+|+|++... .
T Consensus 204 g~--~~~p~----~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~-~~~~---~~~~~~i~~~~~g~l~vs~~-~-- 270 (286)
T 1q7f_A 204 GI--TNYPI----GVGINSNGEILIADNHNNFNLTIFTQDGQLISALE-SKVK---HAQCFDVALMDDGSVVLASK-D-- 270 (286)
T ss_dssp TT--SCSEE----EEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE-ESSC---CSCEEEEEEETTTEEEEEET-T--
T ss_pred Cc--cCCCc----EEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc-ccCC---CCcceeEEECCCCcEEEECC-C--
Confidence 00 01112 55654 578999886665 8999997654322222 1111 00111222344788888752 2
Q ss_pred CCcceeeEEEee
Q 040781 268 EDVKSLKIWQVN 279 (316)
Q Consensus 268 ~~~~~~~iw~l~ 279 (316)
..+.+|.+.
T Consensus 271 ---~~v~v~~~~ 279 (286)
T 1q7f_A 271 ---YRLYIYRYV 279 (286)
T ss_dssp ---TEEEEEECS
T ss_pred ---CeEEEEEcc
Confidence 248899876
No 35
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.61 E-value=0.25 Score=39.83 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=66.7
Q ss_pred CCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeC
Q 040781 147 DPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDP 226 (316)
Q Consensus 147 ~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~ 226 (316)
.+++.+.+..+|.-.|.. ..+.+.++|+++++=.....++. ..... +++..++.+|+.....+.+++||+
T Consensus 23 tqGL~~~~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~--~~fge----Gi~~~~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGET----GRSSVRKVDLETGRILQRAEVPP--PYFGA----GIVAWRDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp EEEEEEETTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCT--TCCEE----EEEEETTEEEEEESSSSEEEEEET
T ss_pred cccEEEECCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCC--Cccee----EEEEeCCEEEEEEeeCCEEEEEEC
Confidence 447777888999887743 23679999999987544444444 33334 788899999999988889999999
Q ss_pred CCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 227 STKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 227 ~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
.+.+ .+..++.+ . ....+...+++|++..+
T Consensus 93 ~tl~--~~~ti~~~---~--~Gwglt~dg~~L~vSdg 122 (243)
T 3mbr_X 93 ATLT--PRARFRYP---G--EGWALTSDDSHLYMSDG 122 (243)
T ss_dssp TTTE--EEEEEECS---S--CCCEEEECSSCEEEECS
T ss_pred CcCc--EEEEEeCC---C--CceEEeeCCCEEEEECC
Confidence 8754 23333333 1 12344445666777654
No 36
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.51 E-value=0.24 Score=42.49 Aligned_cols=132 Identities=17% Similarity=0.068 Sum_probs=72.6
Q ss_pred ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKV 157 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v 157 (316)
.+..+|...++-...- +..........+ .+..+++.+ ..+.+.+||..+++....-.... .-..++.. +..+
T Consensus 13 ~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l 88 (391)
T 1l0q_A 13 NISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQV 88 (391)
T ss_dssp EEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEE
T ss_pred EEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEE
Confidence 3667887766543321 111111222222 345677766 45789999999887644322111 11123332 3456
Q ss_pred EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781 158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
++.+. ....+.+||..+++-........ ... ++++. +..+|+.+...+.|..||+.+.+.
T Consensus 89 ~~~~~------~~~~v~v~d~~~~~~~~~~~~~~----~~~----~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 89 YVTNM------ASSTLSVIDTTSNTVAGTVKTGK----SPL----GLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp EEEET------TTTEEEEEETTTTEEEEEEECSS----SEE----EEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEC------CCCEEEEEECCCCeEEEEEeCCC----Ccc----eEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 66553 22569999998876433311111 111 34443 456888887778999999987763
No 37
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.36 E-value=1.1 Score=38.12 Aligned_cols=132 Identities=10% Similarity=0.068 Sum_probs=74.0
Q ss_pred ceEEeeCCCC--ceeEccCCCCC--------CccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCE
Q 040781 82 TAHAYDARSH--VWIEIKNNQPS--------SFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPV 149 (316)
Q Consensus 82 ~~~~~d~~~~--~w~~~~~~~~~--------~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~ 149 (316)
.+.++|...+ .|..-. +.. ..........++.+|+.+..+.++++|+.|++ |+.-.. ......
T Consensus 64 ~v~a~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~-- 138 (376)
T 3q7m_A 64 LVKALNADDGKEIWSVSL--AEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSR-- 138 (376)
T ss_dssp EEEEEETTTCCEEEEEEC--CC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSC--
T ss_pred eEEEEEccCCceeeeecC--ccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcC--
Confidence 3778998655 465432 110 00111223356888887666789999999886 543211 111222
Q ss_pred EEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 150 VALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 150 ~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
....++.+++... ...+..||..+++ |+.-...+........ ..++.++.+|+.. ..+.+.+||+.
T Consensus 139 p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~~~~~~~v~~g~-~~g~l~~~d~~ 206 (376)
T 3q7m_A 139 PVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGES----APTTAFGAAVVGG-DNGRVSAVLME 206 (376)
T ss_dssp CEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCC----CCEEETTEEEECC-TTTEEEEEETT
T ss_pred CEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCC----CcEEECCEEEEEc-CCCEEEEEECC
Confidence 2335777777542 2458889988775 8765332220011122 4455678887744 44578999997
Q ss_pred CCC
Q 040781 228 TKG 230 (316)
Q Consensus 228 ~~~ 230 (316)
+++
T Consensus 207 tG~ 209 (376)
T 3q7m_A 207 QGQ 209 (376)
T ss_dssp TCC
T ss_pred CCc
Confidence 664
No 38
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.09 E-value=0.22 Score=42.72 Aligned_cols=131 Identities=20% Similarity=0.150 Sum_probs=68.4
Q ss_pred ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKV 157 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v 157 (316)
.+..+|...++....- ...........+ .+..+|+.+ +.+.+.+||..+++....-..... ...++.. +..+
T Consensus 97 ~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~dg~~l 172 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAVTPDGTKV 172 (391)
T ss_dssp EEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEE
T ss_pred EEEEEECCCCeEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC--cceEEECCCCCEE
Confidence 3566777766543321 111111112222 345666665 457999999998876543221111 1122222 3456
Q ss_pred EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEec--ccceEEEeeCCCCC
Q 040781 158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEK--YSGITVSFDPSTKG 230 (316)
Q Consensus 158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~--~~~~i~~yD~~~~~ 230 (316)
++.++. ...+.+||..+++-........ ... ++++. +..+|+.+. ..+.|..||+.+.+
T Consensus 173 ~~~~~~------~~~v~~~d~~~~~~~~~~~~~~----~~~----~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 173 YVANFD------SMSISVIDTVTNSVIDTVKVEA----APS----GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp EEEETT------TTEEEEEETTTTEEEEEEECSS----EEE----EEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred EEEeCC------CCEEEEEECCCCeEEEEEecCC----Ccc----ceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 666542 2458899998875433211111 111 33333 456676664 56789999998764
No 39
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.99 E-value=0.18 Score=41.18 Aligned_cols=73 Identities=3% Similarity=-0.076 Sum_probs=52.8
Q ss_pred CEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 148 PVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 148 ~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
.++...++.+|...|..+ .+.+.++|++|++=....+++. ..... +++..++.+|+.....+.+.+||+.
T Consensus 46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~--~~Fge----Git~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGK--RYFGE----GISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCT--TCCEE----EEEEETTEEEEEESSSSEEEEEETT
T ss_pred ceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCC--cccee----EEEEeCCEEEEEEeeCCEEEEEECc
Confidence 456666888888777432 3578999999987433333433 33334 6888999999999888899999998
Q ss_pred CCC
Q 040781 228 TKG 230 (316)
Q Consensus 228 ~~~ 230 (316)
+.+
T Consensus 116 t~~ 118 (262)
T 3nol_A 116 NLR 118 (262)
T ss_dssp TCC
T ss_pred cCc
Confidence 765
No 40
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.95 E-value=1.5 Score=37.32 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=82.7
Q ss_pred ceEEeeCCCC--ceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCC--CCCCCEEEEECC
Q 040781 82 TAHAYDARSH--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV--WRTDPVVALVGD 155 (316)
Q Consensus 82 ~~~~~d~~~~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~--~~~~~~~~~~~~ 155 (316)
.+.++|...+ .|..-. +. .........++.+|+....+.++.+|+.|++ |+.-...+. .+.....+..++
T Consensus 114 ~l~a~d~~tG~~~W~~~~--~~--~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 189 (376)
T 3q7m_A 114 QVYALNTSDGTVAWQTKV--AG--EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFG 189 (376)
T ss_dssp EEEEEETTTCCEEEEEEC--SS--CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETT
T ss_pred EEEEEECCCCCEEEEEeC--CC--ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECC
Confidence 3667887655 465431 21 1111112246787876666789999999986 654321111 111122333466
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCccc------ccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVL------KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~------~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
.+++ |. ....+..||..+++ |+.-...|... ..... ...+.++.+|+.+ ..+.+.++|+.
T Consensus 190 ~v~~-g~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~v~~~~-~~g~l~~~d~~ 257 (376)
T 3q7m_A 190 AAVV-GG------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT----TPVVVNGVVFALA-YNGNLTALDLR 257 (376)
T ss_dssp EEEE-CC------TTTEEEEEETTTCCEEEEEECCC-----------CCCC----CCEEETTEEEEEC-TTSCEEEEETT
T ss_pred EEEE-Ec------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCC----CcEEECCEEEEEe-cCcEEEEEECC
Confidence 6665 32 12458889987764 77643322100 00112 3456788999876 34578999998
Q ss_pred CCC--ccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 228 TKG--WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 228 ~~~--W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
+++ |+.- .. . ...+...+++|++...
T Consensus 258 tG~~~w~~~----~~----~--~~~~~~~~~~l~~~~~ 285 (376)
T 3q7m_A 258 SGQIMWKRE----LG----S--VNDFIVDGNRIYLVDQ 285 (376)
T ss_dssp TCCEEEEEC----CC----C--EEEEEEETTEEEEEET
T ss_pred CCcEEeecc----CC----C--CCCceEECCEEEEEcC
Confidence 765 5422 11 1 1223445777877764
No 41
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.52 E-value=0.42 Score=39.76 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=73.4
Q ss_pred CCEEEEEc-CCceeeeecCCC-CceeecC--CCCCCCC-CC-EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC--CCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLH-LAWHHVD--APRVWRT-DP-VVALV--GDKVVVAGGACDFEDDPLAVEMYSVD--TRT 182 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t-~~w~~lp--~~~~~~~-~~-~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~--t~~ 182 (316)
+..+|+.+ +.+.+.+||..+ ++...+. ....... .. .++.. +..+++.+. ....+.+|+.. +++
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGN 213 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTSC
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEecCCCCc
Confidence 45677765 557899999877 6554321 1111111 11 22222 234666653 23468888884 455
Q ss_pred eeec---CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCC--CCCccCCCcCCCCCcccceeeeeeE-ee
Q 040781 183 WEIC---QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPS--TKGWSGPFHLRQFDHEKKVFYSVIT-FA 254 (316)
Q Consensus 183 W~~~---~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~--~~~W~~~~~l~~~~~~~~~~~~~l~-~~ 254 (316)
++.. ..++........ ..++++. +..+|+.+...+.|..||+. ++++..+..++.. .. ...+. .-
T Consensus 214 ~~~~~~~~~~~~~~~~~~~--~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~--~~~~~~s~ 286 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRW--AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQ--PRGFNVDH 286 (343)
T ss_dssp CEEEEEEECSCTTCCSCCC--EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SS--CCCEEECT
T ss_pred EEEEeeccccCccccccCC--ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---Cc--cceEEECC
Confidence 5433 223321110000 0134444 45788777666788999987 4444444333222 11 11222 23
Q ss_pred CCE-EEEEecCCCCCCcceeeEEEee
Q 040781 255 NDR-LIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 255 ~g~-L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+|+ |++.+... ..+.+|.++
T Consensus 287 dg~~l~~~~~~~-----~~v~v~~~d 307 (343)
T 1ri6_A 287 SGKYLIAAGQKS-----HHISVYEIV 307 (343)
T ss_dssp TSSEEEEECTTT-----CEEEEEEEE
T ss_pred CCCEEEEecCCC-----CeEEEEEEc
Confidence 454 55444222 348899888
No 42
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.12 E-value=1.8 Score=34.60 Aligned_cols=142 Identities=10% Similarity=0.002 Sum_probs=75.1
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
.|.+|+.. +.+.++++|+.+........... ..-..++.. ++++|+.... ...+.+||..+..-......
T Consensus 118 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~- 189 (270)
T 1rwi_B 118 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT- 189 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS-
T ss_pred CCCEEEEECCCCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc-
Confidence 45677764 44678999877765443321111 111233333 3567776531 24588898877653322111
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEecCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVGLTGEAE 268 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g~~~~~~ 268 (316)
. ..... ++++. +|.+|+.....+.|..||+.+..-.. .+.. .......+ ...+|+|++......
T Consensus 190 ~--~~~p~----~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~---~~~~p~~i~~~~~g~l~v~~~~~~-- 255 (270)
T 1rwi_B 190 D--ITAPW----GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFT---GLNTPLAVAVDSDRTVYVADRGND-- 255 (270)
T ss_dssp S--CCSEE----EEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCC---SCSCEEEEEECTTCCEEEEEGGGT--
T ss_pred C--CCCce----EEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccC---CCCCceeEEECCCCCEEEEECCCC--
Confidence 1 11112 56665 45899988766789999997654221 1111 00011222 234678888875332
Q ss_pred CcceeeEEEee
Q 040781 269 DVKSLKIWQVN 279 (316)
Q Consensus 269 ~~~~~~iw~l~ 279 (316)
.|.++.++
T Consensus 256 ---~v~~~~~~ 263 (270)
T 1rwi_B 256 ---RVVKLTSL 263 (270)
T ss_dssp ---EEEEECCC
T ss_pred ---EEEEEcCC
Confidence 37777666
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.04 E-value=2.6 Score=36.16 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=53.7
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCE-EEEEecccceEEEeeCCCCCcc
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQ-LYVTEKYSGITVSFDPSTKGWS 232 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~-~y~~~~~~~~i~~yD~~~~~W~ 232 (316)
++.++.|+.+ ..+.+||..+++-........ ..... ++++. ++. +.+.++..+.|..||+.+.. .
T Consensus 259 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~v~----~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~ 325 (420)
T 3vl1_A 259 GKYVIAGHVS------GVITVHNVFSKEQTIQLPSKF--TCSCN----SLTVDGNNANYIYAGYENGMLAQWDLRSPE-C 325 (420)
T ss_dssp TEEEEEEETT------SCEEEEETTTCCEEEEECCTT--SSCEE----EEEECSSCTTEEEEEETTSEEEEEETTCTT-S
T ss_pred CCEEEEEcCC------CeEEEEECCCCceeEEccccc--CCCce----eEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-C
Confidence 4555665432 348899988765221111101 11111 34444 333 66667677889999998765 1
Q ss_pred CCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 233 GPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.+..+... ....-..+...++++++.++... .+.+|.+.
T Consensus 326 ~~~~~~~~---~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~ 364 (420)
T 3vl1_A 326 PVGEFLIN---EGTPINNVYFAAGALFVSSGFDT-----SIKLDIIS 364 (420)
T ss_dssp CSEEEEES---TTSCEEEEEEETTEEEEEETTTE-----EEEEEEEC
T ss_pred chhhhhcc---CCCCceEEEeCCCCEEEEecCCc-----cEEEEecc
Confidence 12212211 01111223344677777765333 49999997
No 44
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.01 E-value=2 Score=34.76 Aligned_cols=107 Identities=6% Similarity=0.008 Sum_probs=60.2
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
..|.+|+.. +.+.++++|+ +++...+..+........++.. ++++++... ....+..||. +++...+. .
T Consensus 108 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~-~ 178 (299)
T 2z2n_A 108 PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN------QNNAIGRITE-SGDITEFK-I 178 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECT-TCCEEEEE-C
T ss_pred CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcC-CCcEEEee-C
Confidence 346677765 4568999999 7766554321111111233332 356776542 2245888888 77666541 1
Q ss_pred CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781 190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG 233 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~ 233 (316)
+.. ..... ++++. ++.+|+.....+.|..||+ ++.+..
T Consensus 179 ~~~-~~~~~----~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 179 PTP-ASGPV----GITKGNDDALWFVEIIGNKIGRITT-SGEITE 217 (299)
T ss_dssp SST-TCCEE----EEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred CCC-CCcce----eEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence 110 11111 45555 4778988765668899999 666554
No 45
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.98 E-value=1.9 Score=36.02 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=52.5
Q ss_pred eeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-e-eecC-CCCcccccCccc
Q 040781 124 LSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-W-EICQ-SMPAVLKDSAAS 199 (316)
Q Consensus 124 ~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W-~~~~-~~p~~~~~~~~~ 199 (316)
.++++|+.+++....-.......-..+++. ++++|+... ....+.+||..... . ..+. ............
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDV------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEET------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEEC------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 689999988876432111111111133332 456887763 23468888876542 1 1111 110000000000
Q ss_pred cceeEEEe--CCEEEEEec-ccceEEEeeCCCCC
Q 040781 200 TWLSVAVN--SRQLYVTEK-YSGITVSFDPSTKG 230 (316)
Q Consensus 200 ~~~~~~~~--~~~~y~~~~-~~~~i~~yD~~~~~ 230 (316)
.-.++++. ++.+|+.++ ..+.|..||.....
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~ 177 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF 177 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE
Confidence 01267776 689999996 57789999965443
No 46
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.81 Score=38.58 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=55.7
Q ss_pred EEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 117 YTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 117 ~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
++.| ..+.+.+||...+....+......... ..++.. . .++++.|+.+ ..+.+||..+++|..+..+..
T Consensus 26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~ 99 (379)
T 3jrp_A 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAV 99 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETTEEEEEEEECC
T ss_pred EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCCceeEeeeecC
Confidence 3444 456799998875554443221111111 123222 1 4555555432 348899999988876643321
Q ss_pred ccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...... .+++.. +.+.+.++..+.|..||+.+..
T Consensus 100 -~~~~v~----~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 100 -HSASVN----SVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp -CSSCEE----EEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred -CCcceE----EEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 011111 344442 4566666677889999998764
No 47
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.75 E-value=2.1 Score=34.15 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=59.5
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
.|.+|+....+.+++||+.++....++.... ..-..++.. ++++|+.... ...+.+|+..+......... .
T Consensus 77 ~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~ 148 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-G 148 (270)
T ss_dssp TCCEEEEETTTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-S
T ss_pred CCCEEEEcCCCEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-c
Confidence 3557776655689999998876655532111 111133332 4567776431 23577787666544332111 0
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... ++++. ++.+|+.....+.|..||+.+..
T Consensus 149 --~~~p~----~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 149 --LNDPD----GVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp --CCSCC----CEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred --CCCce----eEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 11112 45555 47799988766789999998765
No 48
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=93.67 E-value=0.7 Score=37.73 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=62.1
Q ss_pred CEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 148 PVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 148 ~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
.++...+..+|...|.. ..+.++|++|++=.... ++. ..... +++..++.+|+.....+.+.+||+.
T Consensus 58 qGL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~--~~Fge----Git~~g~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLG--NIFAE----GLASDGERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECT--TCCEE----EEEECSSCEEEEESSSCEEEEEETT
T ss_pred ceEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCC--Cccee----EEEEeCCEEEEEEccCCEEEEEECC
Confidence 46767788999987742 23889999988633222 433 22334 6888999999998888899999998
Q ss_pred CCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 228 TKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 228 ~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
+.+- +..++.+ . ....+...+++|++..+
T Consensus 125 Tl~~--~~ti~~~---~--eGwGLt~Dg~~L~vSdG 153 (268)
T 3nok_A 125 PPQR--ERTTRYS---G--EGWGLCYWNGKLVRSDG 153 (268)
T ss_dssp TTEE--EEEEECS---S--CCCCEEEETTEEEEECS
T ss_pred cCcE--EEEEeCC---C--ceeEEecCCCEEEEECC
Confidence 7652 2323322 1 11344455667777654
No 49
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=93.62 E-value=2.7 Score=34.94 Aligned_cols=109 Identities=6% Similarity=0.081 Sum_probs=60.7
Q ss_pred cCCEEEEEc-C-CceeeeecCCCCceee-cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLS-P-SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~g-g-~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.++.+|+.+ + .+.++++|+.+++-.. ++..........+..-+..+|+... ...+.+||..+++=.....
T Consensus 151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~ 223 (353)
T 3vgz_A 151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKK 223 (353)
T ss_dssp TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEE
Confidence 457777765 3 4679999999876543 3312221222223223456666543 2457789988765322211
Q ss_pred CCcc-cccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781 189 MPAV-LKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 189 ~p~~-~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
.+.. ..... .++++. ++.+|+.+...+.|..||+.+.+.
T Consensus 224 ~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 224 LLDDGKEHFF----INISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp CCCSSSCCCE----EEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred cCCCCCCccc----ceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 1110 01111 134444 667888877667899999987763
No 50
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.47 E-value=2.3 Score=36.78 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=61.3
Q ss_pred cCCEEEEEcCC-ceeeeecCCCCceeecCCCCCC-C-CCC--EEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 112 HSTLLYTLSPS-KLSFSFDPLHLAWHHVDAPRVW-R-TDP--VVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 112 ~~~~l~~~gg~-~~~~v~np~t~~w~~lp~~~~~-~-~~~--~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
.++.+++.++. +.+.+||+.+++.....+.... . ... .++. -+.++++.++. ...+.+||..+++-..
T Consensus 132 ~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~------d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 132 DNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ------ANAVHVFDLKTLAYKA 205 (433)
T ss_dssp SSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG------GTEEEEEETTTCCEEE
T ss_pred CCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC------CCEEEEEECCCceEEE
Confidence 36777777643 5799999999887654322111 1 111 1222 24677777652 2458899988765332
Q ss_pred cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.-.. . ..... ++++. +..+|+.+...+.|..||+.+.+
T Consensus 206 ~~~~-~--~~~~~----~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 206 TVDL-T--GKWSK----ILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEEC-S--SSSEE----EEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEcC-C--CCCee----EEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 2111 1 11111 34444 56678887667789999998765
No 51
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=93.36 E-value=2.3 Score=34.42 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=58.7
Q ss_pred cCCEEEEEcC--CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLSP--SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~gg--~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
..+.+|+.+. ...+.+||+..+....+..... ..-..++.. ++++|+... ....+.+||.....-..+..
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVEC------KVMRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEEEEEEC
T ss_pred CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEEC------CCCEEEEEcCCCCEEEEeCC
Confidence 4577888763 5789999965444444422111 111123332 356777653 22468888876543333321
Q ss_pred CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
... ..... ++++. ++.+|+.+...+.|..||+..+.
T Consensus 160 ~~~--~~~p~----~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 160 SKH--LEFPN----GVVVNDKQEIFISDNRAHCVKVFNYEGQY 196 (286)
T ss_dssp TTT--CSSEE----EEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred CCc--cCCcE----EEEECCCCCEEEEECCCCEEEEEcCCCCE
Confidence 101 11112 55555 47899988777789999986654
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=92.76 E-value=1.3 Score=37.24 Aligned_cols=107 Identities=10% Similarity=0.055 Sum_probs=54.4
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+..|+..+..+.+.+||..++++..+......... ..++.. . ...++.++. ...+.+||..++.-.....
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCTTSCCCEEE
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC------CCcEEEEecCCCCceeeEE
Confidence 34544444457899999999876554322211111 122222 1 345555542 3458888887763211110
Q ss_pred CCcccccCccccceeEEEe--------------CCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--------------SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--------------~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.. .... ...++.. ++.+.+.++..+.|..||+.+..
T Consensus 143 ~~~-~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 143 IDA-HAIG----VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEC-CTTC----EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred ecC-CCCc----eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 000 0000 1123333 36667777777789999987654
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=92.68 E-value=1.9 Score=35.48 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=67.8
Q ss_pred CEEEEEcCCceeeeecCCCCcee-ecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWH-HVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
..++..+..+.+.+||..+++.. .++....+ -..+... +.+.++.|+.+ ..+.+||..+++-...-....
T Consensus 120 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~ 191 (312)
T 4ery_A 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD 191 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSS
T ss_pred CEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccC
Confidence 34333334578999998877643 23211111 0112221 34555555432 348899988765422111101
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
..... .+++. ++.+.+.++..+.|..||+.+.+-. ..+.................++.+++.|+...
T Consensus 192 --~~~~~----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---- 259 (312)
T 4ery_A 192 --NPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN---- 259 (312)
T ss_dssp --CCCEE----EEEECTTSSEEEEEETTTEEEEEETTTTEEE--EEECSSCCSSSCCCEEEECSSSCEEEECCTTS----
T ss_pred --CCceE----EEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEEecCCceEEEEEEEEeCCCcEEEEECCCC----
Confidence 11111 23333 4555666667778999999876421 11111100000011111223566666665433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
.+.+|.++
T Consensus 260 -~i~vwd~~ 267 (312)
T 4ery_A 260 -LVYIWNLQ 267 (312)
T ss_dssp -CEEEEETT
T ss_pred -EEEEEECC
Confidence 38889886
No 54
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.43 E-value=3.6 Score=33.17 Aligned_cols=134 Identities=6% Similarity=-0.068 Sum_probs=70.0
Q ss_pred eEEeeCCCCceeEccCCCCCCccc-eeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDF-LLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVV 159 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~-~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~ 159 (316)
+..+|+. +....... +...... .......|.+|+.. +.+.++++|+. ++...+..+.....-..++.. ++++++
T Consensus 38 v~~~d~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v 114 (299)
T 2z2n_A 38 ISCINLD-GKITEYPL-PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWF 114 (299)
T ss_dssp EEEECTT-CCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred EEEEcCC-CCeEEecC-CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEE
Confidence 6678877 66655432 2111111 12222345667665 35689999986 555444321111111133332 356777
Q ss_pred EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781 160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG 233 (316)
Q Consensus 160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~ 233 (316)
.... ...+.+||. +++...... +.. ..... ++++. ++.+|+.....+.|..||+ +++...
T Consensus 115 ~~~~------~~~i~~~d~-~g~~~~~~~-~~~-~~~~~----~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 175 (299)
T 2z2n_A 115 TEMN------GNRIGRITD-DGKIREYEL-PNK-GSYPS----FITLGSDNALWFTENQNNAIGRITE-SGDITE 175 (299)
T ss_dssp EETT------TTEEEEECT-TCCEEEEEC-SST-TCCEE----EEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred EecC------CceEEEECC-CCCEEEecC-CCC-CCCCc----eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE
Confidence 6421 245778888 555554321 110 11112 45555 5788988765568899999 666544
No 55
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.31 E-value=3.1 Score=38.14 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=67.3
Q ss_pred cCCEEEEEcC-CceeeeecC-CCCc--eeecCCCCC-----C---CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCC
Q 040781 112 HSTLLYTLSP-SKLSFSFDP-LHLA--WHHVDAPRV-----W---RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVD 179 (316)
Q Consensus 112 ~~~~l~~~gg-~~~~~v~np-~t~~--w~~lp~~~~-----~---~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~ 179 (316)
.++.||+.+. .+.++.+|+ .|++ |+.-..... . ......++.+++||+... ...+..+|..
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~ 133 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLALDAK 133 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEEEECC
Confidence 5789999887 678999999 8875 654322111 0 111234457888888642 2458889988
Q ss_pred CCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCCCCC--cc
Q 040781 180 TRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKG--WS 232 (316)
Q Consensus 180 t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~--W~ 232 (316)
+++ |+.-..-+........ +..+.++.+|+.... .+.|.+||..+++ |+
T Consensus 134 tG~~~W~~~~~~~~~~~~~~~----~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 134 TGKINWEVEVCDPKVGSTLTQ----APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TCCEEEEEECCCGGGTCBCCS----CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCCEEEEecCCCCCccceecc----CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 874 8754221110001112 344578899886542 4689999998765 64
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.19 E-value=0.51 Score=40.10 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=67.7
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSM 189 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~ 189 (316)
+.+++.| ..+.+.+||..++.|..+..+...... ..++.. +.+.++.|+.+ ..+.+||..++. |.....+
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEEC
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEe
Confidence 4444555 347899999998876655433221111 122222 24455555422 348888888776 5544222
Q ss_pred CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC-ccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCC
Q 040781 190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG-WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEA 267 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~-W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~ 267 (316)
.. ...... .+++. ++.+.+.++..+.|..||+.++. |.....+..+. ..... +....-++++++.++...
T Consensus 97 ~~-~~~~v~----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h-~~~v~-~~~~~~~~~~l~~~~~d~- 168 (377)
T 3dwl_C 97 LR-LNRAAT----FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL-RSTIL-SLDWHPNNVLLAAGCADR- 168 (377)
T ss_dssp CC-CSSCEE----EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC-CSCEE-EEEECTTSSEEEEEESSS-
T ss_pred cc-cCCceE----EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-CCCeE-EEEEcCCCCEEEEEeCCC-
Confidence 11 011111 33333 45555666667788999998765 43333333310 01111 111223556666665433
Q ss_pred CCcceeeEEEee
Q 040781 268 EDVKSLKIWQVN 279 (316)
Q Consensus 268 ~~~~~~~iw~l~ 279 (316)
.+.+|.++
T Consensus 169 ----~i~iwd~~ 176 (377)
T 3dwl_C 169 ----KAYVLSAY 176 (377)
T ss_dssp ----CEEEEEEC
T ss_pred ----EEEEEEEE
Confidence 38899985
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=92.12 E-value=4.2 Score=33.26 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=52.0
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
..|+..+..+.+.+||..+++....-. . .... .+... +.+.++.|+.+ ..+.+||..+++-... ++
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~--~~ 146 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLK--G-HSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKT--LP 146 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEE--EC
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEc--C-CCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEE--ec
Confidence 444333345789999988876432111 0 1111 11111 23455555432 3488999887653221 11
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ...... ++++. ++.+.+.++..+.|..||+.+.+
T Consensus 147 ~-~~~~v~----~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 147 A-HSDPVS----AVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp C-CSSCEE----EEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred C-CCCcEE----EEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 1 011111 33333 45566777777889999998765
No 58
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.02 E-value=2.1 Score=36.79 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=55.5
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
+.++..+..+.+.+||..+++...+-.......-..++.. +.+.+++|+.+ ..+.+||..+++-...-.. .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~- 175 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRTMAG-H- 175 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECC-C-
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEEecC-C-
Confidence 4444555557899999999887654322111111122222 34555555432 3488999887653322111 1
Q ss_pred cccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 193 LKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... .+..++ .+.+.++..+.|..||+....
T Consensus 176 -~~~v~----~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 176 -QARVG----CLSWNR-HVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp -SSCEE----EEEEET-TEEEEEETTSEEEEEETTSSS
T ss_pred -CCceE----EEEECC-CEEEEEcCCCCEEEEecccCc
Confidence 11111 445544 455566677889999998543
No 59
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=91.73 E-value=2.3 Score=39.86 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=67.5
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCC--------CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVW--------RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
.++.||+.+..+.++.+|+.|++ |+.-+..+.. ....+.++.+++||+... ...+..+|..|+
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG 137 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIALDAKTG 137 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEETTTC
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEEEECCCC
Confidence 57888988766789999999886 6653221110 011234456788887542 245888998887
Q ss_pred C--eeecCCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--ccC
Q 040781 182 T--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WSG 233 (316)
Q Consensus 182 ~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~~ 233 (316)
+ |+.-..-+........ +..+.++.+|+..+ ..+.|.+||..+++ |+.
T Consensus 138 ~~~W~~~~~~~~~~~~~~~----~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 138 KAIWSQQTTDPAKPYSITG----APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp CEEEEEECSCTTSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEeeeeccCCCCCcceecC----CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5 8764321110011112 34567888888643 24689999998765 653
No 60
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=91.70 E-value=1.3 Score=42.12 Aligned_cols=106 Identities=14% Similarity=0.061 Sum_probs=58.1
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
..+...+..+.+.+||..++.+..+......... ..+... . ...++.|+.+ ..+.+||..++.|..+...
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETTEEEEEEEE
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCCcccccccc
Confidence 3433333457899999876555544222211111 122222 2 4555555532 3488999988887666432
Q ss_pred CcccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.. ...... ++++.. +.+.+.++..+.|..||+.+..
T Consensus 96 ~~-h~~~V~----~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 96 AV-HSASVN----SVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp CC-CSSCEE----EEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred cC-CCCCeE----EEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 11 011111 344442 5677777777899999998764
No 61
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.58 E-value=4.6 Score=32.55 Aligned_cols=134 Identities=8% Similarity=-0.012 Sum_probs=69.5
Q ss_pred eEEeeCCCCceeEccCCCCCCccc-eeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDF-LLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVV 159 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~-~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~ 159 (316)
+..||+. ++...... +...... .......|.+|+.. +.+.++++|+. ++...+........-..++.. ++++++
T Consensus 85 v~~~d~~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 85 IGKLSKK-GGFTEYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp EEEECTT-SCEEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred EEEECCC-CCeEEecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 5667777 55554422 2111111 12222346677765 35689999997 666544211111111123221 355776
Q ss_pred EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781 160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG 233 (316)
Q Consensus 160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~ 233 (316)
... ....+.+||. +++...+. .+.. ..... ++++. ++.+|+.....+.|..||+ ++.+..
T Consensus 162 ~~~------~~~~i~~~~~-~g~~~~~~-~~~~-~~~~~----~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 162 TEN------QNNSIGRITN-TGKLEEYP-LPTN-AAAPV----GITSGNDGALWFVEIMGNKIGRITT-TGEISE 222 (300)
T ss_dssp EET------TTTEEEEECT-TCCEEEEE-CSST-TCCEE----EEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred Eec------CCCeEEEECC-CCcEEEee-CCCC-CCCcc----eEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence 542 1245788888 66665542 1110 11112 45555 5789998766667899999 555444
No 62
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=91.53 E-value=3.2 Score=39.00 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=68.1
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCC--------CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV--------WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~--------~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
.++.||+.+..+.++.+|+.|++ |+.-+..+. .....+.++.+++||+... ...+..+|.+|+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~AlDa~TG 141 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAIDAKTG 141 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTC
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEEEECCCC
Confidence 57898988766789999999886 664322111 0111234457888887642 245788998887
Q ss_pred C--eeecCC-CCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--ccC
Q 040781 182 T--WEICQS-MPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WSG 233 (316)
Q Consensus 182 ~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~~ 233 (316)
+ |+.-.. -+........ +..+.++.+|+..+ ..+.|.+||..+++ |+.
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~----sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITG----APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEeeeecCcCCCCCCccccC----CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 5 876532 1110011112 34567889888543 24689999998776 753
No 63
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.52 E-value=3.4 Score=34.05 Aligned_cols=132 Identities=8% Similarity=0.019 Sum_probs=68.6
Q ss_pred ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEcC-CceeeeecCCCCce--eecCCCCCCCCCCEEEEE--CC
Q 040781 82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLSP-SKLSFSFDPLHLAW--HHVDAPRVWRTDPVVALV--GD 155 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~gg-~~~~~v~np~t~~w--~~lp~~~~~~~~~~~~~~--~~ 155 (316)
.+..+|...++....- +..........+ .|..+|+.+. .+.++++|+.+++. ..+.....+. ..++.. +.
T Consensus 21 ~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~dg~ 96 (331)
T 3u4y_A 21 RISFFSTDTLEILNQI--TLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM--ADVDITPDDQ 96 (331)
T ss_dssp EEEEEETTTCCEEEEE--ECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC--CCEEECTTSS
T ss_pred eEEEEeCcccceeeeE--EccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc--cceEECCCCC
Confidence 3677898877665431 211111122222 3456777663 67999999998874 2232221121 112222 34
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccce-EEEeeCCCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGI-TVSFDPSTK 229 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~-i~~yD~~~~ 229 (316)
.++ +....+ ....+.+||..+++-...... ..... ++++. |..+|+.+...+. |..||+..+
T Consensus 97 ~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~----~~~~~----~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 97 FAV-TVTGLN---HPFNMQSYSFLKNKFISTIPI----PYDAV----GIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp EEE-ECCCSS---SSCEEEEEETTTTEEEEEEEC----CTTEE----EEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred EEE-EecCCC---CcccEEEEECCCCCeEEEEEC----CCCcc----ceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 555 432110 112799999988765433111 11111 34444 3468887765556 888887643
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=91.44 E-value=6.6 Score=34.10 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCc
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
..+.+||..+++-...-..+. .+.. ...++... +.+.+.++..+.|..||+.+++.
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~--~~~~--~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPN--KHQS--AVTCLQFN-KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTT--SCSS--CEEEEEEC-SSEEEEEETTSEEEEEETTTCCE
T ss_pred CeEEEEECCCCcEEEEEccCC--CCCC--CEEEEEEC-CCEEEEEeCCCeEEEEECCCCce
Confidence 347888887654322111111 1111 11134444 55666666778899999988763
No 65
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.30 E-value=1.8 Score=37.35 Aligned_cols=99 Identities=8% Similarity=0.069 Sum_probs=55.0
Q ss_pred eeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccce
Q 040781 124 LSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWL 202 (316)
Q Consensus 124 ~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~ 202 (316)
.++.+|+.++.+..+...+.......++.. +.++++.++.+ ..+.++|..+++-...........+... ..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~--v~ 173 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGF--VE 173 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCE--EE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCc--ee
Confidence 678888877655443321111111122222 56777776532 3488999998876543222110011110 11
Q ss_pred eEEE-eCCEEEEEecccceEEEeeCCCCC
Q 040781 203 SVAV-NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~-~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++++ .++.+++.++..+.|..||+.+.+
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 2333 367888888877899999998765
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.21 E-value=8.3 Score=34.81 Aligned_cols=144 Identities=12% Similarity=0.095 Sum_probs=72.3
Q ss_pred CCEEEEEcC-CceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 113 STLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 113 ~~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
+..+...+. .+.+.+||..+++... ......... ..++.. +++.++.|+.+ ..+.+||..+++=.. .+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~~--~~ 526 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQSREVKT--SR 526 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--CC
T ss_pred CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCccee--Ee
Confidence 444444444 5789999998876532 111111111 122222 45566666532 348899988764322 11
Q ss_pred CcccccCccccceeEEEe-----------CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEE
Q 040781 190 PAVLKDSAASTWLSVAVN-----------SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRL 258 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-----------~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L 258 (316)
......... ++++. ++.+.+.++..+.|..||+.+.. ..+..+... ..... ......+++
T Consensus 527 ~~~h~~~v~----~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h--~~~v~-~l~~s~~~~- 597 (615)
T 1pgu_A 527 WAFRTSKIN----AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAH--KDGVN-NLLWETPST- 597 (615)
T ss_dssp SCCCSSCEE----EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSS--TTCEE-EEEEEETTE-
T ss_pred ecCCCCcee----EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcC--ccceE-EEEEcCCCC-
Confidence 110011111 34443 46666777777889999998753 222222221 01111 222344677
Q ss_pred EEEecCCCCCCcceeeEEEee
Q 040781 259 IAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 259 ~v~g~~~~~~~~~~~~iw~l~ 279 (316)
++.++... .+.+|.++
T Consensus 598 l~s~~~d~-----~v~iw~~~ 613 (615)
T 1pgu_A 598 LVSSGADA-----CIKRWNVV 613 (615)
T ss_dssp EEEEETTS-----CEEEEEEC
T ss_pred eEEecCCc-----eEEEEeee
Confidence 55554333 39999987
No 67
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.18 E-value=5.9 Score=33.05 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=69.5
Q ss_pred CCEEEEEcCCceeeeecCCCCc-eeecCCCCCCCCCCE--EEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 113 STLLYTLSPSKLSFSFDPLHLA-WHHVDAPRVWRTDPV--VALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~-w~~lp~~~~~~~~~~--~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
.+.+.+....+.+.+||..+++ .+.+... ..... ++.. ..+.++.|+.+ ..+.+||..+++-...
T Consensus 94 D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 94 CNRLLLLYPGNQITILDSKTNKVLREIEVD---SANEIIYMYGHNEVNTEYFIWADNR------GTIGFQSYEDDSQYIV 164 (343)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEEEECC---CSSCEEEEECCC---CCEEEEEETT------CCEEEEESSSSCEEEE
T ss_pred CCeEEEEEccCceEEeecCCcceeEEeecC---CCCCEEEEEcCCCCCCCEEEEEeCC------CcEEEEECCCCcEEEE
Confidence 3444444444456666666665 2222111 11111 1111 33455555532 3488999887765332
Q ss_pred CCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCC
Q 040781 187 QSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTG 265 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~ 265 (316)
..... ..... ++++. ++.+.+.|+..+.|..||+.+.+-. ...+... +..... .....-+|+.++.++.+
T Consensus 165 ~~~~~--~~~i~----~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~-h~~~v~-~l~fs~~g~~l~s~~~~ 235 (343)
T 3lrv_A 165 HSAKS--DVEYS----SGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPVD-EEAKIK-EVKFADNGYWMVVECDQ 235 (343)
T ss_dssp ECCCS--SCCCC----EEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCCC-TTSCEE-EEEECTTSSEEEEEESS
T ss_pred EecCC--CCceE----EEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEecc-CCCCEE-EEEEeCCCCEEEEEeCC
Confidence 21111 11111 34444 5667777778889999999877621 0123221 001111 11123356666666522
Q ss_pred CCCCcceeeEEEee
Q 040781 266 EAEDVKSLKIWQVN 279 (316)
Q Consensus 266 ~~~~~~~~~iw~l~ 279 (316)
.+.+|.+.
T Consensus 236 ------~v~iwd~~ 243 (343)
T 3lrv_A 236 ------TVVCFDLR 243 (343)
T ss_dssp ------BEEEEETT
T ss_pred ------eEEEEEcC
Confidence 39999987
No 68
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=91.01 E-value=2.7 Score=35.22 Aligned_cols=143 Identities=11% Similarity=0.058 Sum_probs=70.0
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPA 191 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~ 191 (316)
+.++..++.+.+.+||..+++....-...... -..++.. +.++++.|+.+ ..+.+||..++.-... ..-
T Consensus 155 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~~h-- 225 (340)
T 1got_B 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQTFTGH-- 225 (340)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEEECCC--
T ss_pred CcEEEEECCCcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEEEcCC--
Confidence 44433344578999998887653321111000 0122222 34556666532 3488898877642221 110
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
... ..++++. ++.+.+.++..+.|..||+.+..- +..+..+....... .....-+|++++.|+...
T Consensus 226 --~~~----v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~~d~---- 292 (340)
T 1got_B 226 --ESD----INAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGIT-SVSFSKSGRLLLAGYDDF---- 292 (340)
T ss_dssp --SSC----EEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEE-EEEECTTSSEEEEEETTS----
T ss_pred --cCC----EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceE-EEEECCCCCEEEEECCCC----
Confidence 111 1134444 456677777778899999987541 11111110001111 111233667777775433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
.+.+|.+.
T Consensus 293 -~i~vwd~~ 300 (340)
T 1got_B 293 -NCNVWDAL 300 (340)
T ss_dssp -EEEEEETT
T ss_pred -eEEEEEcc
Confidence 38888875
No 69
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=90.96 E-value=7.3 Score=36.98 Aligned_cols=161 Identities=10% Similarity=0.050 Sum_probs=83.1
Q ss_pred eEEeeCCCCceeEccCCC---CC-CccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE---CC
Q 040781 83 AHAYDARSHVWIEIKNNQ---PS-SFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV---GD 155 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~---~~-~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~---~~ 155 (316)
+..||+..+++......+ .+ ...........|.|++-...+.++++|+.++++..+............+.. ++
T Consensus 471 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 550 (781)
T 3v9f_A 471 VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG 550 (781)
T ss_dssp EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS
T ss_pred eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC
Confidence 455777776665542101 00 011112222345556544324699999999988876532222222222222 34
Q ss_pred EEEEEcCcCCCCCCCcEE-EEEeCCCCCeeecC---CCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 156 KVVVAGGACDFEDDPLAV-EMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v-~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+++... ..+ ..||+.+++++... .+|. .. .. +++.. +|.+|+.+.. .|..||+.+++
T Consensus 551 ~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~--~~-i~----~i~~d~~g~lW~~t~~--Gl~~~~~~~~~ 613 (781)
T 3v9f_A 551 QMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPN--TH-IR----AISEDKNGNIWASTNT--GISCYITSKKC 613 (781)
T ss_dssp CEEEEET--------TEEEEESCTTTCCCEEECGGGTCSC--CC-CC----EEEECSSSCEEEECSS--CEEEEETTTTE
T ss_pred CEEEEEC--------CCceEEECCCCCcEEEccccCCCCC--ce-EE----EEEECCCCCEEEEcCC--ceEEEECCCCc
Confidence 5555431 235 77888888876653 2332 11 11 44444 5778887643 57999999888
Q ss_pred ccCCCc---CCCCCccccee-eeeeEeeCCEEEEEecC
Q 040781 231 WSGPFH---LRQFDHEKKVF-YSVITFANDRLIAVGLT 264 (316)
Q Consensus 231 W~~~~~---l~~~~~~~~~~-~~~l~~~~g~L~v~g~~ 264 (316)
+..+.. ++.. ... .+.+...+|+|++.+..
T Consensus 614 ~~~~~~~dGl~~~----~f~~~~~~~~~~G~l~~g~~~ 647 (781)
T 3v9f_A 614 FYTYDHSNNIPQG----SFISGCVTKDHNGLIYFGSIN 647 (781)
T ss_dssp EEEECGGGTCCSS----CEEEEEEEECTTSCEEEEETT
T ss_pred eEEecccCCcccc----ccccCceEECCCCEEEEECCC
Confidence 665432 2211 111 22333446777776643
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=90.93 E-value=3.9 Score=33.91 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=54.2
Q ss_pred CEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCC--EEEE-----ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781 114 TLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDP--VVAL-----VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~--~~~~-----~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~ 184 (316)
..++..+..+.+.+||..+++ ...+.......... .++. .+.+.++.|+. ...+.+||..+++=.
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD------NGDIKLFDLRNMALR 203 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET------TSEEEEEETTTTEEE
T ss_pred cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc------CCeEEEEECccCcee
Confidence 344433345789999988865 33332222211112 1221 24455555542 246889998876532
Q ss_pred ecCCCCcccccCccccceeEEEe----CCEEEEEecccceEEEeeCCCCC
Q 040781 185 ICQSMPAVLKDSAASTWLSVAVN----SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... ..... ++++. ++.+.+.++..+.|..||+.+..
T Consensus 204 ~~~~~----~~~v~----~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 204 WETNI----KNGVC----SLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEEC----SSCEE----EEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred eecCC----CCceE----EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 22111 11111 44454 45666666677789999987654
No 71
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=90.90 E-value=3.2 Score=34.07 Aligned_cols=104 Identities=11% Similarity=-0.017 Sum_probs=52.4
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
..++..+..+.+.+||..+++............. ..++.. +.+.++.++.+ ..+.+||..+++-...-.. .
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~-~ 182 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQG-H 182 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECC-C
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeec-c
Confidence 4444444457899999988764332211111111 122222 34455555422 3488999887654322111 0
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... ++++. ++.+.+.++..+.|..||+.+.+
T Consensus 183 --~~~i~----~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 183 --TDGAS----CIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp --SSCEE----EEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred --cCceE----EEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 11111 33443 45555666677789999998765
No 72
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=90.90 E-value=5.4 Score=32.11 Aligned_cols=134 Identities=10% Similarity=-0.024 Sum_probs=69.9
Q ss_pred eEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEE
Q 040781 83 AHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVV 159 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~ 159 (316)
+..||+. ++...+.. +.. ...........+.+|+.. +.+.++++|+. ++...+..+.....-..++.. ++++++
T Consensus 43 v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v 119 (300)
T 2qc5_A 43 ISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWF 119 (300)
T ss_dssp EEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEECCC-CceEEEEC-CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEE
Confidence 5668877 56555422 211 111112223346667765 35789999998 776654321111111233332 456777
Q ss_pred EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781 160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG 233 (316)
Q Consensus 160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~ 233 (316)
... ....+..||.. ++..... ++.. ..... ++++. ++.+|+.....+.|..||+ ++++..
T Consensus 120 ~~~------~~~~i~~~~~~-g~~~~~~-~~~~-~~~~~----~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 180 (300)
T 2qc5_A 120 TQL------NGDRIGKLTAD-GTIYEYD-LPNK-GSYPA----FITLGSDNALWFTENQNNSIGRITN-TGKLEE 180 (300)
T ss_dssp EET------TTTEEEEECTT-SCEEEEE-CSST-TCCEE----EEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred Ecc------CCCeEEEECCC-CCEEEcc-CCCC-CCCce----eEEECCCCCEEEEecCCCeEEEECC-CCcEEE
Confidence 642 12457788877 5554332 1110 11111 44443 4678988765668899999 555444
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=90.86 E-value=6.3 Score=32.85 Aligned_cols=134 Identities=12% Similarity=0.209 Sum_probs=63.5
Q ss_pred eEEeeCCCCceeEccCCCCCCcc---ceeeeec-CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFD---FLLRSSH-STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDK 156 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~---~~~~~s~-~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~ 156 (316)
+..||...+++..+. .+..+. .....+. +..++..+..+.+.+||..++++............ ..+... +.+
T Consensus 32 v~i~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 109 (372)
T 1k8k_C 32 VHIYEKSGNKWVQVH--ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 109 (372)
T ss_dssp EEEEEEETTEEEEEE--EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS
T ss_pred EEEEeCCCCcEEeee--eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC
Confidence 666777776543332 111111 1222232 34544444457899999988876543211111111 122222 344
Q ss_pred EEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCC
Q 040781 157 VVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 157 v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~ 228 (316)
.++.|+.+ ..+.+||..++. |........ .+.. ...++++. ++.+.+.++..+.|..||+..
T Consensus 110 ~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~--~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 110 KFAVGSGS------RVISICYFEQENDWWVCKHIKK--PIRS--TVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp EEEEEETT------SSEEEEEEETTTTEEEEEEECT--TCCS--CEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred EEEEEeCC------CEEEEEEecCCCcceeeeeeec--ccCC--CeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 55555422 336777766543 333221111 1111 11134443 455666666777899999753
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=90.75 E-value=3.2 Score=35.15 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCC-CCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRV-WRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~-~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.+.++..+..+.+.+||..+++......... ..... .++.. +++.++.|+.+ ..+.++|..+++-...-.
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d------g~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD------FSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEEEEc
Confidence 3555555556789999998876543322111 11112 22222 34555555432 348889988765322211
Q ss_pred CCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. +... ..++++. +..+++.++..+.|..||+.+.+
T Consensus 179 ~-----h~~~--v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~ 215 (357)
T 4g56_B 179 A-----HSSE--VNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215 (357)
T ss_dssp C-----CSSC--EEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred C-----CCCC--EEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence 1 1100 1133333 33466677777789999998765
No 75
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=90.68 E-value=7.8 Score=33.61 Aligned_cols=104 Identities=9% Similarity=-0.065 Sum_probs=55.5
Q ss_pred EEEEcC-CceeeeecCCCCceeecCCCCC-CCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 116 LYTLSP-SKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 116 l~~~gg-~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
+++.|+ .+.+.+||..+++...+-.... ...-..++.. +...++.|+.+ ..+.++|..++.-+.+.....
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~ 207 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------GTTRLQDFKGNILRVFASSDT 207 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------SCEEEEETTSCEEEEEECCSS
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------CEEEEeeccCCceeEEeccCC
Confidence 344553 4789999998876433211111 1111234432 34455555532 348889988766544422111
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...... ++.+. ++.+.+.++..+.|..||+..+.
T Consensus 208 -~~~~~~----~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 208 -INIWFC----SLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp -CSCCCC----CEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred -CCccEE----EEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 011111 33343 56677777777889999987654
No 76
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=90.54 E-value=5.4 Score=33.30 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=53.6
Q ss_pred CCEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
.+.+++.| ..+.+.+||..++.... +.... .. -..++.. +++.++.|+.+ ..+.+||..+++-...-..
T Consensus 195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~-~~-v~~v~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD-INAICFFPNGNAFATGSDD------ATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SC-EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc-CC-EEEEEEcCCCCEEEEEcCC------CcEEEEECCCCcEEEEEcc
Confidence 34444554 34789999988765432 21100 00 0122222 34555555532 3488899877642211111
Q ss_pred CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+. ...... ++++. ++.+.+.++..+.|..||..+..
T Consensus 267 ~~-~~~~v~----~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 267 DN-IICGIT----SVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp TT-CCSCEE----EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CC-cccceE----EEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 11 000111 33333 56677777777889999987654
No 77
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=90.52 E-value=3.7 Score=38.49 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCC--------CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVW--------RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
.++.||+.+..+.++.+|+.|++ |+.-+..... ......++.+.+||+... ...+..+|..|+
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~alD~~tG 148 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALDAATG 148 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEETTTC
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEEEECCCC
Confidence 57889988766789999999885 6543321110 112234557888888642 245888998877
Q ss_pred C--eeecCC-CCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--cc
Q 040781 182 T--WEICQS-MPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WS 232 (316)
Q Consensus 182 ~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~ 232 (316)
+ |+.-.. -+........ +..+.++.+|+... ..+.|.+||..+++ |+
T Consensus 149 ~~~W~~~~~~~~~~~~~~~~----~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 149 KEVWHQNTFEGQKGSLTITG----APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp CEEEEEETTTTCCSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CEEeeecCCcCcCcCccccc----CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 5 876432 1110011112 34567899988654 25689999998775 65
No 78
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=90.41 E-value=7.7 Score=33.10 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.6
Q ss_pred CCEEEEEecccceEEEeeCCCCC
Q 040781 208 SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 208 ~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++.+.+.++..+.|..||+.+..
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCc
Confidence 46666777777889999998765
No 79
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=90.37 E-value=6.4 Score=32.08 Aligned_cols=136 Identities=9% Similarity=-0.019 Sum_probs=79.6
Q ss_pred CceEEeeCCCCceeE-ccCCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCce-eecCCCCCCCCCCEEEEECCEE
Q 040781 81 TTAHAYDARSHVWIE-IKNNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAW-HHVDAPRVWRTDPVVALVGDKV 157 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~~~~~v 157 (316)
+.+..+|+..++-.. ++. +..++.. ..+..++.||+.. ..+.++++|+.|.+- ..+|.. .....+++.-+.++
T Consensus 44 s~v~~iD~~tg~v~~~i~l-~~~~fge-Gi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l 119 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKM-DDSYFGE-GLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKIL 119 (266)
T ss_dssp CEEEEEETTTCCEEEEEEC-CTTCCEE-EEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSE
T ss_pred CEEEEEECCCCCEEEEEec-CCCcceE-EEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEE
Confidence 447789998876543 321 2111111 1222467889877 458999999998754 445422 12334565556778
Q ss_pred EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc-ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA-VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
|+..| ...+.++|+++.+=...-.... +.+.... ..+...++.+|+.....+.|.+.|+.+++
T Consensus 120 ~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~---nele~~dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 120 YGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL---NELEYINGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp EEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE---EEEEEETTEEEEEETTSSEEEEEETTTCC
T ss_pred EEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccc---eeEEEECCEEEEecCCCCeEEEEECCCCc
Confidence 87643 2468899998865322111100 0011000 03444588999888777899999999876
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=90.15 E-value=3.2 Score=34.02 Aligned_cols=140 Identities=9% Similarity=0.012 Sum_probs=67.5
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
..++..+..+.+.+||..+++....-...... -..++.. +.+.++.++. ...+.+||..+++-......+.
T Consensus 154 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~- 225 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISNDGTKLWTGGL------DNTVRSWDLREGRQLQQHDFTS- 225 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECSS-
T ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeecccCc-eEEEEECCCCCEEEEEec------CCcEEEEECCCCceEeeecCCC-
Confidence 44444434578999998887643321111110 1122222 3444445542 2458899988764322211111
Q ss_pred cccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcc
Q 040781 193 LKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVK 271 (316)
Q Consensus 193 ~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~ 271 (316)
... .+++. ++.+.+.++..+.|..||+.+..-.. +... ..... ......++++++.++...
T Consensus 226 ---~v~----~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~--~~~v~-~~~~~~~~~~l~~~~~dg----- 287 (337)
T 1gxr_A 226 ---QIF----SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---LHLH--ESCVL-SLKFAYCGKWFVSTGKDN----- 287 (337)
T ss_dssp ---CEE----EEEECTTSSEEEEEETTSCEEEEETTSSCEEE---ECCC--SSCEE-EEEECTTSSEEEEEETTS-----
T ss_pred ---ceE----EEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---EcCC--cccee-EEEECCCCCEEEEecCCC-----
Confidence 111 33333 45556666666788999998765221 2111 01111 111223556656554322
Q ss_pred eeeEEEee
Q 040781 272 SLKIWQVN 279 (316)
Q Consensus 272 ~~~iw~l~ 279 (316)
.+.+|.++
T Consensus 288 ~i~~~~~~ 295 (337)
T 1gxr_A 288 LLNAWRTP 295 (337)
T ss_dssp EEEEEETT
T ss_pred cEEEEECC
Confidence 38888876
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=89.90 E-value=5.3 Score=34.15 Aligned_cols=104 Identities=9% Similarity=-0.054 Sum_probs=52.7
Q ss_pred EEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CCCc
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SMPA 191 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~p~ 191 (316)
+++..+..+.+.+||..+++... +........-..++.. +++.++.++. ...+.+||..+++-...- ....
T Consensus 146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~ 219 (402)
T 2aq5_A 146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR------DKRVRVIEPRKGTVVAEKDRPHE 219 (402)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET------TSEEEEEETTTTEEEEEEECSSC
T ss_pred EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec------CCcEEEEeCCCCceeeeeccCCC
Confidence 43333345789999998876543 2100001111122222 3445555542 246899998876532211 1111
Q ss_pred ccccCccccceeEEE-eCCEEEEEe---cccceEEEeeCCCCC
Q 040781 192 VLKDSAASTWLSVAV-NSRQLYVTE---KYSGITVSFDPSTKG 230 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~-~~~~~y~~~---~~~~~i~~yD~~~~~ 230 (316)
..... .++. .++.+.+.+ ...+.|..||+.+..
T Consensus 220 --~~~~~----~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 220 --GTRPV----HAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp --SSSCC----EEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred --CCcce----EEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 11011 2333 356666666 466789999998754
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=89.85 E-value=3.6 Score=35.58 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
.+++ +.+|-.+.+++||..|++...+-........ .+++.. +++.++.|+.+ ..+.++|..+++-... +
T Consensus 115 ~~n~-lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~~~~~~--~ 185 (420)
T 4gga_A 115 SGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRN--M 185 (420)
T ss_dssp TTSE-EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEE--E
T ss_pred CCCE-EEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCCcEEEE--E
Confidence 3454 4455346899999999987654222221111 122222 35666666533 4488999887652221 1
Q ss_pred CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. .+... ..++.. ++.+.+.++..+.+..+|.....
T Consensus 186 ~---~h~~~--v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 186 T---SHSAR--VGSLSW-NSYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp C---CCSSC--EEEEEE-ETTEEEEEETTSEEEEEETTSSS
T ss_pred e---CCCCc--eEEEee-CCCEEEEEeCCCceeEeeecccc
Confidence 0 11111 112333 34555666677788889987654
No 83
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=89.71 E-value=3.3 Score=34.94 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=54.5
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCC-CCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAP-RVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~-~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.+.+...+..+.+.+||..+++....... ....... .++.. +++.++.|+.+ ..+.++|..+++=.. .
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d------~~i~iwd~~~~~~~~--~ 164 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD------ICIKVWDLAQQVVLS--S 164 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--E
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEE--E
Confidence 35544434457899999988765332111 1111111 22222 34555555432 348889888764221 1
Q ss_pred CCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+. .+... ...+++. +..+++.++..+.|..||+.+.+
T Consensus 165 ~~---~h~~~--V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 165 YR---AHAAQ--VTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp EC---CCSSC--EEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred Ec---CcCCc--eEEEEecCCCCCceeeeccccccccccccccc
Confidence 10 11111 1133333 34567777777889999998765
No 84
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=89.41 E-value=8.2 Score=31.95 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=54.4
Q ss_pred CEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+..++.| ..+.+.+||..+++... +.....+ -..++.. +.++++.|+.+ ..+.+||..+..-... +.
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~spd~~~l~s~s~d------g~i~iwd~~~~~~~~~--~~ 245 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMP--IRSLTFSPDSQLLVTASDD------GYIKIYDVQHANLAGT--LS 245 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--CCEEEECTTSCEEEEECTT------SCEEEEETTTCCEEEE--EC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc--eeEEEEcCCCCEEEEEcCC------CeEEEEECCCcceeEE--Ec
Confidence 4434444 34789999998876432 3211111 1123332 34566666532 3488999877653321 10
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.. ....+++. ++.+.+.++..+.|..||+.+.+
T Consensus 246 ---~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 246 ---GHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp ---CCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ---CCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 0110 01134444 45666677777889999998764
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=89.38 E-value=9.9 Score=32.87 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=65.8
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC--EEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
+.++..+..+.+.+||..++.-............. .+.. +.+.++.|+. ...+.+||..+++=... +..
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~------dg~i~vwd~~~~~~~~~--~~~ 294 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASG------DRTIKVWNTSTCEFVRT--LNG 294 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEET------TSEEEEEETTTCCEEEE--EEC
T ss_pred CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeC------CCeEEEEECCcCcEEEE--EcC
Confidence 44333334467888888776532111000111111 2223 3344444432 24588999887642211 110
Q ss_pred ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcc
Q 040781 192 VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVK 271 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~ 271 (316)
...... .+... +.+.+.++..+.|..||+.++.- +..+... ..... .+ ..++..++.|+...
T Consensus 295 -~~~~v~----~~~~~-~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h--~~~v~--~~-~~~~~~l~sg~~dg----- 356 (435)
T 1p22_A 295 -HKRGIA----CLQYR-DRLVVSGSSDNTIRLWDIECGAC--LRVLEGH--EELVR--CI-RFDNKRIVSGAYDG----- 356 (435)
T ss_dssp -CSSCEE----EEEEE-TTEEEEEETTSCEEEEETTTCCE--EEEECCC--SSCEE--EE-ECCSSEEEEEETTS-----
T ss_pred -CCCcEE----EEEeC-CCEEEEEeCCCeEEEEECCCCCE--EEEEeCC--cCcEE--EE-EecCCEEEEEeCCC-----
Confidence 011111 34444 45566666777899999987641 1112211 01111 22 22566666665433
Q ss_pred eeeEEEee
Q 040781 272 SLKIWQVN 279 (316)
Q Consensus 272 ~~~iw~l~ 279 (316)
.+.+|.+.
T Consensus 357 ~i~vwd~~ 364 (435)
T 1p22_A 357 KIKVWDLV 364 (435)
T ss_dssp CEEEEEHH
T ss_pred cEEEEECC
Confidence 38889886
No 86
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=89.15 E-value=10 Score=32.76 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=51.3
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~ 200 (316)
..+++||..+++...+...... ...++.. +.+++..+..+ ....+.++|..+++.+.+...+. ...
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~--~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~~l~~~~~----~~~-- 270 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRS----NNT-- 270 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSC--EEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEECCCCSS----CEE--
T ss_pred cEEEEEECCCCcEEEeecCCCc--ccCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEEeCcCCCC----ccc--
Confidence 5899999999887766432211 1122222 23455444321 23568899999887665533211 111
Q ss_pred ceeEEEe--CCEEEEEeccc--ceEEEeeCCCCC
Q 040781 201 WLSVAVN--SRQLYVTEKYS--GITVSFDPSTKG 230 (316)
Q Consensus 201 ~~~~~~~--~~~~y~~~~~~--~~i~~yD~~~~~ 230 (316)
.++.. |..+++..... ..|+.+|+.++.
T Consensus 271 --~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 271 --EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp --EEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred --ceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 23332 34455554322 268888998776
No 87
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=89.08 E-value=9.6 Score=32.29 Aligned_cols=143 Identities=8% Similarity=0.008 Sum_probs=69.4
Q ss_pred cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
.++.+++.+..+.+.+||..+++....-..... .-..++.. +.+.++.++.+ ..+.+||..+++-...-..
T Consensus 216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~- 287 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNCFYG- 287 (425)
T ss_dssp ETTEEEEECGGGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEEECC-
T ss_pred CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceEecC-
Confidence 346655544457899999887643221111110 01122222 34455555422 3488888776542221110
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED 269 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~ 269 (316)
. ..... +++.. ++ +++.++..+.|..||+.+.+- +..+... ..... ......+++++++++...
T Consensus 288 ~--~~~i~----~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~--~~~i~-~~~~s~~~~~l~~~~~dg--- 352 (425)
T 1r5m_A 288 H--SQSIV----SASWVGDD-KVISCSMDGSVRLWSLKQNTL--LALSIVD--GVPIF-AGRISQDGQKYAVAFMDG--- 352 (425)
T ss_dssp C--SSCEE----EEEEETTT-EEEEEETTSEEEEEETTTTEE--EEEEECT--TCCEE-EEEECTTSSEEEEEETTS---
T ss_pred C--CccEE----EEEECCCC-EEEEEeCCCcEEEEECCCCcE--eEecccC--CccEE-EEEEcCCCCEEEEEECCC---
Confidence 0 11111 44444 44 666666778899999977652 1111111 01111 111223566666665333
Q ss_pred cceeeEEEee
Q 040781 270 VKSLKIWQVN 279 (316)
Q Consensus 270 ~~~~~iw~l~ 279 (316)
.+.+|.++
T Consensus 353 --~i~i~~~~ 360 (425)
T 1r5m_A 353 --QVNVYDLK 360 (425)
T ss_dssp --CEEEEECH
T ss_pred --eEEEEECC
Confidence 38899887
No 88
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.91 E-value=4.7 Score=34.34 Aligned_cols=102 Identities=12% Similarity=0.017 Sum_probs=47.6
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CCCcc-cccCcc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SMPAV-LKDSAA 198 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~p~~-~~~~~~ 198 (316)
..+.+.+||..+++....-.............-+++.++.|+.+ ..+.+||..+..-..-. ..... ..+...
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~ 159 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD------SACSIFNLSSQADRDGNMPVSRVLTGHKGY 159 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS------SCCEEEECCCCSSCCCSSTTCCBCCCCSSC
T ss_pred CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC------CcEEEEECCCCccccCCccceeeccCCCcc
Confidence 44789999998876433211111111111111245566666643 34677877653321110 00000 011100
Q ss_pred ccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 199 STWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 199 ~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...+... ++...+.++..+.|..||+.++.
T Consensus 160 --v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 160 --ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp --CCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred --eEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 0011111 23445566677789999998775
No 89
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=88.88 E-value=6 Score=32.80 Aligned_cols=102 Identities=17% Similarity=0.085 Sum_probs=53.1
Q ss_pred CEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+.+++.+ ..+.+.+||..+++... +...+.. ...++.. +.+.++.|+. ...+.+||..++.=...-..
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~g~~------dg~v~i~~~~~~~~~~~~~~- 162 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD--AWTLAFSPDSQYLATGTH------VGKVNIFGVESGKKEYSLDT- 162 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCTTC--CCCEEECTTSSEEEEECT------TSEEEEEETTTCSEEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc--EEEEEECCCCCEEEEEcC------CCcEEEEEcCCCceeEEecC-
Confidence 4444444 34789999998876432 2211111 1122222 3455555542 34588888877653221100
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..... ++++. ++.+.+.++..+.|..||+.+++
T Consensus 163 ~--~~~v~----~~~~spdg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 163 R--GKFIL----SIAYSPDGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp S--SSCEE----EEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred C--CceEE----EEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 0 00111 33333 45666677777889999998765
No 90
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=88.77 E-value=3.6 Score=34.73 Aligned_cols=104 Identities=12% Similarity=-0.002 Sum_probs=53.1
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.+..++.| ..+.+.+||..+++....-.- .... .++.. +..+++.|+.+ ..+.++|..+++-...-
T Consensus 138 dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~---h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~ 208 (344)
T 4gqb_B 138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRA---HAAQVTCVAASPHKDSVFLSCSED------NRILLWDTRCPKPASQI 208 (344)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECSSCTTEEEEEETT------SCEEEEETTSSSCEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcC---cCCceEEEEecCCCCCceeeeccc------cccccccccccceeeee
Confidence 34444454 347899999988765332111 1111 12221 23455555432 34889998876533221
Q ss_pred CCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.... ...... +++.. ++.+.+.++..+.|..||+.+.+
T Consensus 209 ~~~~-~~~~~~----~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 209 GCSA-PGYLPT----SLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp C-----CCCEE----EEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred ecce-eeccce----eeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 1101 011111 33333 56677777777889999998764
No 91
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=88.65 E-value=2.9 Score=35.85 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=54.5
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
.+..++.| ..+.+.+||..+++....-...... -..++.. +++.++.|+. ...+.++|..+++-...-...
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD-IYSLDYFPSGDKLVSGSG------DRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC-EEEEEEcCCCCEEEEecC------CCcEEEEECCCCeeEEEEEcC
Confidence 34444444 4578999999887653321111100 0122222 2334444442 255889998877643321111
Q ss_pred cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ... .+++. ++.+.+.++..+.|..||+.++.
T Consensus 207 ~----~v~----~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~ 240 (393)
T 1erj_A 207 D----GVT----TVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240 (393)
T ss_dssp S----CEE----EEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred C----CcE----EEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 1 111 33333 56777777777889999998765
No 92
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=88.62 E-value=8.3 Score=31.79 Aligned_cols=112 Identities=8% Similarity=0.019 Sum_probs=60.8
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QS 188 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~ 188 (316)
..|.||+.+ ..+.+++||+.+++...+.... ...-..++.. ++++++....... ....+.+||..++.-+.+ ..
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEEECS
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEEEcc
Confidence 345577665 3468999999998877653111 1111123332 4567666421100 124688899888765532 21
Q ss_pred CCcccccCccccceeEEEe-CCEEEEEecc------cceEEEeeCCCCCcc
Q 040781 189 MPAVLKDSAASTWLSVAVN-SRQLYVTEKY------SGITVSFDPSTKGWS 232 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~------~~~i~~yD~~~~~W~ 232 (316)
... ..... ++++. ++.+|+.... .+.|+.+|+.+++..
T Consensus 131 ~~~--~~~~~----~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 131 LST--AYCID----DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp SSS--CCCEE----EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred Ccc--CCccc----ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence 111 11111 34444 5678886542 356899998876644
No 93
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=88.33 E-value=5.1 Score=33.33 Aligned_cols=184 Identities=10% Similarity=-0.003 Sum_probs=85.0
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcC---CceeeeecCCCCceeecCCCCC-CCCCCEEEEE--CCE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSP---SKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALV--GDK 156 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~--~~~ 156 (316)
++.+|...++...+...........+..+..|.||+.+. .+.+.+||..+++.+.+..... ...-..++.. +..
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~ 99 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL 99 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE
Confidence 455777766665432101001112233344455777653 4789999998877665532111 1111233333 345
Q ss_pred EEEEcCcCCCCCCCcEEEEEeCC-CCCeeecCCCCcc--c--ccCccccceeEEEe-CCEEEEEecccceEEEeeCC-CC
Q 040781 157 VVVAGGACDFEDDPLAVEMYSVD-TRTWEICQSMPAV--L--KDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPS-TK 229 (316)
Q Consensus 157 v~~~gg~~~~~~~~~~v~vy~~~-t~~W~~~~~~p~~--~--~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~-~~ 229 (316)
+++.+. ....+.+|+.. +++.+.+...+.. . .+.......++++. ++.+|+.+...+.|..||+. ++
T Consensus 100 l~~~~~------~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 100 VYSANY------HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp EEEEET------TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred EEEEeC------CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 666542 12457788774 3344433211110 0 00000001123343 45588887666788999988 44
Q ss_pred CccCCCcCCCCCcccceeeeeeEeeCCE-EEEEecCCCCCCcceeeEEEee
Q 040781 230 GWSGPFHLRQFDHEKKVFYSVITFANDR-LIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 230 ~W~~~~~l~~~~~~~~~~~~~l~~~~g~-L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+...+.....+.. .. .......-+|+ |++.+... ..+.+|.++
T Consensus 174 ~~~~~~~~~~~~g-~~-p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~ 217 (347)
T 3hfq_A 174 QLSEQSVLTMEAG-FG-PRHLVFSPDGQYAFLAGELS-----SQIASLKYD 217 (347)
T ss_dssp CEEEEEEEECCTT-CC-EEEEEECTTSSEEEEEETTT-----TEEEEEEEE
T ss_pred cEEEeeeEEcCCC-CC-CceEEECCCCCEEEEEeCCC-----CEEEEEEec
Confidence 4332221111100 00 11112233555 66655322 248888887
No 94
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=88.14 E-value=1.4 Score=36.90 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=35.3
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEee-CCEEEEEecCCCCCCcceeeEEEee
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFA-NDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~-~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.++...+.+.+.++..+.|..||..++.|..+.................... ++++++.++... .+.||.++
T Consensus 255 ~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-----~v~~W~~~ 327 (330)
T 2hes_X 255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG-----IVNFWSLE 327 (330)
T ss_dssp EEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS-----EEEEEEC-
T ss_pred EEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC-----cEEEEEec
Confidence 4444444455666677789999998877654332211100001111111111 456666665433 39999886
No 95
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=88.07 E-value=7 Score=32.05 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=55.2
Q ss_pred cCCEEEEEcCC-ceeeeecCC--CCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eee
Q 040781 112 HSTLLYTLSPS-KLSFSFDPL--HLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEI 185 (316)
Q Consensus 112 ~~~~l~~~gg~-~~~~v~np~--t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~ 185 (316)
.+..||+.+.. +.+.+|+.. ++++..+...+.......++.. +..+++.+. ....+.+||...+. .+.
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEEEEEEETTEEEEE
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------CCCeEEEEECCCCccccc
Confidence 45667766643 788888765 7776654322221122233332 234655543 12457788774222 222
Q ss_pred cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC-CCc
Q 040781 186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST-KGW 231 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~-~~W 231 (316)
+...+. ..... ++++. +..+|+.+...+.|..||+.+ ++.
T Consensus 122 ~~~~~~--~~~~~----~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 122 VDVVEG--LDGCH----SANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp EEEECC--CTTBC----CCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred cccccC--CCCce----EEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 221111 11111 22333 456888775667899999987 554
No 96
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=88.07 E-value=3.1 Score=35.23 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=52.8
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+..++.| ..+.+.+||..+++....-...... -..++.. +..+++.++.+ ..+.+||.++++-.......
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-VNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-EEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeec
Confidence 4434444 4478999999887654321111110 0122222 22344444422 34888888776533221111
Q ss_pred cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ... ...++++. ++.+.+.++..+.|..||+.+.+
T Consensus 224 ~--~~~---~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 224 A--SDT---IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp T--CCS---CEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred c--ccc---cccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 1 100 01134443 45677777777789999997654
No 97
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=87.97 E-value=2.4 Score=35.11 Aligned_cols=109 Identities=10% Similarity=-0.040 Sum_probs=58.0
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.++.+|+.+ +.+.+.++|+.+++....-+.+.......++.. +..+++.+. ....+.+||..+++-...-.
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcEEEEEE
Confidence 456667665 568999999999876432111210012233333 335666653 22468899998876433211
Q ss_pred CCcc---cccCccccceeEEEe--CCEEEEEecc-----------cceEEEeeCCCCC
Q 040781 189 MPAV---LKDSAASTWLSVAVN--SRQLYVTEKY-----------SGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~---~~~~~~~~~~~~~~~--~~~~y~~~~~-----------~~~i~~yD~~~~~ 230 (316)
.+.. ...... ++++. |..+|+.+.. .+.|..||+.+++
T Consensus 83 ~~~~~~~~~~~~~----~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 83 LSSVPGEVGRSMY----SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp SCCSTTEEEECSS----CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ccccccccccccc----ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 1110 000111 33343 4467766532 3688999998754
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=87.91 E-value=7.2 Score=32.89 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=52.3
Q ss_pred CCceeeeecCCCCceeecCCCCC-CCCCCEEEEEC--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVG--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSA 197 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~ 197 (316)
..+.+.+||..+++....-.... ...-..++... ...++.++. ...+.++|..+.....+..... .....
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~-~~~~v 166 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI------RGATTLRDFSGSVIQVFAKTDS-WDYWY 166 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET------TTEEEEEETTSCEEEEEECCCC-SSCCE
T ss_pred CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC------CCEEEEEECCCCceEEEeccCC-CCCCe
Confidence 34689999998877654422111 11111233333 355665542 2458899988766555432211 01111
Q ss_pred cccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781 198 ASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 198 ~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
. ++++. ++.+.+.++..+.|..||+..+
T Consensus 167 ~----~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 195 (383)
T 3ei3_B 167 C----CVDVSVSRQMLATGDSTGRLLLLGLDGH 195 (383)
T ss_dssp E----EEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred E----EEEECCCCCEEEEECCCCCEEEEECCCC
Confidence 1 33333 4556666667788999998543
No 99
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=87.79 E-value=7.7 Score=35.73 Aligned_cols=110 Identities=14% Similarity=0.159 Sum_probs=65.2
Q ss_pred cCCEEEEEcC-CceeeeecC-CCCc--eeecCCCCC-----CC---CCCEEEE--ECCE----EEEEcCcCCCCCCCcEE
Q 040781 112 HSTLLYTLSP-SKLSFSFDP-LHLA--WHHVDAPRV-----WR---TDPVVAL--VGDK----VVVAGGACDFEDDPLAV 173 (316)
Q Consensus 112 ~~~~l~~~gg-~~~~~v~np-~t~~--w~~lp~~~~-----~~---~~~~~~~--~~~~----v~~~gg~~~~~~~~~~v 173 (316)
.++.||+.+. .+.++.+|+ .|++ |+.-+.... .. ...+.++ .+++ ||+... ...+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-------dg~l 133 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-------DGNV 133 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------TSEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-------CCEE
Confidence 4789999887 678999999 8875 665332211 11 1123344 4555 776532 2457
Q ss_pred EEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--cc
Q 040781 174 EMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WS 232 (316)
Q Consensus 174 ~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~ 232 (316)
..+|..|++ |+.-..-+........ +..+.++.+|+..+ ..+.|.+||..+++ |+
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~s----sP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 134 AALNAETGETVWKVENSDIKVGSTLTI----APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp EEEETTTCCEEEEEECCCGGGTCBCCS----CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEeecCCCCCccceeec----CCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence 788988775 8764221110001112 34567888887653 35689999998765 65
No 100
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=87.79 E-value=11 Score=31.20 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=62.8
Q ss_pred cCCEEEEEcCCceeeeecCCCCceee-cCCCCC-CCCCC-EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHH-VDAPRV-WRTDP-VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~-~~~~~-~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
.+..+|+....+.+.++|+.+++-.. ++.... +.... .++.. +..+|+... ....+.+||..+++-...
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS------KAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES------SSSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEE
Confidence 45778887766789999999886543 221111 11111 23333 456766653 235689999988765433
Q ss_pred CCCCcccccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781 187 QSMPAVLKDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...+. . . ++++ .+..+|+.+...+.|..||+.+.+
T Consensus 269 ~~~~~--~---~----~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 269 VAAPE--S---L----AVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EECSS--C---C----CEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEcCC--C---c----eEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 22222 1 1 2333 356688888767889999998766
No 101
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=87.75 E-value=3.8 Score=34.01 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=67.8
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCC---CeeecCCCCcccccCc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTR---TWEICQSMPAVLKDSA 197 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~---~W~~~~~~p~~~~~~~ 197 (316)
+.++++|+.+++...+.. ......+++.. +..+|+.-. ....+.+|+..+. ..+.+..++ . .
T Consensus 165 g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~~~----g-P 231 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVKIP----N-P 231 (322)
T ss_dssp EEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEECS----S-E
T ss_pred ceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEeCC----C-C
Confidence 568999998887654421 11111234443 235777642 1245888887652 333322221 1 2
Q ss_pred cccceeEEEe-CCEEEEEecc----------cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781 198 ASTWLSVAVN-SRQLYVTEKY----------SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGE 266 (316)
Q Consensus 198 ~~~~~~~~~~-~~~~y~~~~~----------~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~ 266 (316)
. ++++. +|.+|+.... .+.|..||+..+....+. .+.. ........+...+|+||+.+....
T Consensus 232 ~----gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g--~~~~~~~~~~~~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 232 G----NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPP--FAGEHFEQIQEHDGLLYIGTLFHG 304 (322)
T ss_dssp E----EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTT--TTTSCCCEEEEETTEEEEECSSCS
T ss_pred C----CeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCC--CccccceEEEEeCCEEEEeecCCC
Confidence 2 55555 4678887643 457899999755433222 2211 000111223346889998874332
Q ss_pred CCCcceeeEEEee
Q 040781 267 AEDVKSLKIWQVN 279 (316)
Q Consensus 267 ~~~~~~~~iw~l~ 279 (316)
.|.++.++
T Consensus 305 -----~i~~~~~~ 312 (322)
T 2fp8_A 305 -----SVGILVYD 312 (322)
T ss_dssp -----EEEEEEC-
T ss_pred -----ceEEEecc
Confidence 26556555
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=87.63 E-value=2.6 Score=36.25 Aligned_cols=136 Identities=13% Similarity=0.177 Sum_probs=66.4
Q ss_pred CceeeeecCCCCceee-cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcc
Q 040781 122 SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA 198 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~ 198 (316)
.+.+.+||..+++-.. +.... ..-..++.. +..+++.|+-. ....+.+||..+++-...-.. .....
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs----~d~~i~i~d~~~~~~~~~~~~----~~~v~ 307 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDA----GSQVT 307 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCT----TTCEEEEEETTTCCEEEEEEC----SSCEE
T ss_pred CCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCC----CCCEEEEEECCCCCEEEEEeC----CCcEE
Confidence 4688899987765432 21111 111233333 34566665311 234588999887653322111 11111
Q ss_pred ccceeEEEe--CCEEEEE-ecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeE
Q 040781 199 STWLSVAVN--SRQLYVT-EKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKI 275 (316)
Q Consensus 199 ~~~~~~~~~--~~~~y~~-~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~i 275 (316)
+++.. +..++.. |...+.|..||..+........++.. ..... .....-+|++++.++... .+.+
T Consensus 308 ----~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h--~~~v~-~~~~s~dg~~l~s~~~dg-----~i~i 375 (401)
T 4aez_A 308 ----SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH--DTRVL-YSALSPDGRILSTAASDE-----NLKF 375 (401)
T ss_dssp ----EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC--SSCCC-EEEECTTSSEEEEECTTS-----EEEE
T ss_pred ----EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC--CCCEE-EEEECCCCCEEEEEeCCC-----cEEE
Confidence 33333 3344444 33667899999887654433222221 01111 111233566666664333 4999
Q ss_pred EEee
Q 040781 276 WQVN 279 (316)
Q Consensus 276 w~l~ 279 (316)
|.+.
T Consensus 376 w~~~ 379 (401)
T 4aez_A 376 WRVY 379 (401)
T ss_dssp EECC
T ss_pred EECC
Confidence 9997
No 103
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=87.47 E-value=2.3 Score=35.19 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=59.7
Q ss_pred CCEEEEEc-CCceeeeecCCCCce----eecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAW----HHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w----~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
|..+|+.+ +.+.+.+||+.+++. ..++.. .....++.. +..+++... ....+.++|..+++.+.
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~------~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTE------STVDVFNFNQLSGTLSF 257 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECS------SEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEc------CCCEEEEEECCCCceee
Confidence 45577766 457899999988775 233221 111123332 344666543 12458889999887754
Q ss_pred cCCCCccc-----ccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781 186 CQSMPAVL-----KDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~~~~p~~~-----~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+...+... ..... .++++ .+..+|+.+...+.|.+||+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~---~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 258 VKSFGHGLLIDPRPLFGA---NQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEECCCCCCCGGGTTC---CCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ecccccccccCCCCcccc---cceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 43221100 11100 01233 356788888777789999998765
No 104
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=87.32 E-value=2.8 Score=35.25 Aligned_cols=105 Identities=9% Similarity=0.039 Sum_probs=53.1
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEe--CCEEEEEecc-cceEEEeeCC-
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVN--SRQLYVTEKY-SGITVSFDPS- 227 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~-~~~i~~yD~~- 227 (316)
..+|+... ....+.+|+..+++.+.+.. .+.. ..... ++++. |..+|+.... .+.|..||+.
T Consensus 223 ~~l~v~~~------~~~~v~v~~~~~g~~~~~~~~~~~~~~-~~~~~----~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 223 KFAYLINE------IGGTVIAFRYADGMLDEIQTVAADTVN-AQGSG----DIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp SEEEEEET------TTCEEEEEEEETTEEEEEEEEESCSSC-CCCEE----EEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred CEEEEEcC------CCCeEEEEEecCCceEEeEEEecCCCC-CCCcc----cEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 35666653 22458889888877755532 2220 01111 34443 4567877655 5678888775
Q ss_pred -CCCccCCCcCCCCCcccceeeeeeEeeCCE-EEEEecCCCCCCcceeeEEEee
Q 040781 228 -TKGWSGPFHLRQFDHEKKVFYSVITFANDR-LIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 228 -~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~-L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
++++..+..++.. .. -......-+|+ |++.+... ..+.+|.++
T Consensus 292 ~~g~~~~~~~~~~g---~~-~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d 336 (361)
T 3scy_A 292 TNGTLTKVGYQLTG---IH-PRNFIITPNGKYLLVACRDT-----NVIQIFERD 336 (361)
T ss_dssp TTCCEEEEEEEECS---SC-CCEEEECTTSCEEEEEETTT-----TEEEEEEEC
T ss_pred CCCcEEEeeEecCC---CC-CceEEECCCCCEEEEEECCC-----CCEEEEEEE
Confidence 4554443322211 00 01111233555 55544322 248899888
No 105
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=87.32 E-value=4 Score=35.28 Aligned_cols=142 Identities=10% Similarity=0.071 Sum_probs=68.6
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
+.+++.| ..+.+.+||..+++....-...... -..++.. ++++++.|+.+ ..+.+||..+.+- +..+..
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~-V~~v~~~~~~~~l~sgs~D------~~i~iwd~~~~~~--~~~~~~ 190 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSAD------MTIKLWDFQGFEC--IRTMHG 190 (410)
T ss_dssp SSEEEEEESSSCEEEEETTTCCCCEEECCCSSC-EEEEEECTTSSEEEEEETT------SCCCEEETTSSCE--EECCCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCce--eEEEcC
Confidence 3334444 3478999999887653321111110 0122222 34556666533 3366788765432 222211
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
..... .++++. ++.+.+.++..+.|..||+.++.-. ..+... ...........+|.+++.++...
T Consensus 191 -h~~~V----~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~--~~~~~h---~~~v~~~~~~~~g~~l~s~s~D~---- 256 (410)
T 1vyh_C 191 -HDHNV----SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV--KTFTGH---REWVRMVRPNQDGTLIASCSNDQ---- 256 (410)
T ss_dssp -CSSCE----EEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECC---SSCEEEEEECTTSSEEEEEETTS----
T ss_pred -CCCCE----EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEeCC---CccEEEEEECCCCCEEEEEcCCC----
Confidence 01111 134443 4556667777789999999876521 111111 11111111233566666665433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
.+.+|.+.
T Consensus 257 -~v~vwd~~ 264 (410)
T 1vyh_C 257 -TVRVWVVA 264 (410)
T ss_dssp -CEEEEETT
T ss_pred -eEEEEECC
Confidence 28888775
No 106
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=87.30 E-value=4.7 Score=33.98 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=48.2
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~ 200 (316)
.+.+.+||..+++....-...... -..++.. +...++.|+.+ ..+.+||..++.-...-.... ......
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~-v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~~~-~~~~~~-- 288 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESD-VNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYSKES-IIFGAS-- 288 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTT-CCSCEE--
T ss_pred CCeEEEEECCCCcEEEEecCCCCC-eEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCC-ccccee--
Confidence 467889998887653321111100 0122222 34455555432 348889887764222111100 001111
Q ss_pred ceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 201 WLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 201 ~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+++. ++.+.+.++..+.|..||+.++.
T Consensus 289 --~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 289 --SVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp --EEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred --EEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 23333 45666666677789999997654
No 107
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=87.12 E-value=6.7 Score=32.20 Aligned_cols=94 Identities=9% Similarity=0.075 Sum_probs=46.7
Q ss_pred CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781 122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~ 200 (316)
.+.+.+||..+++....-...... -..++.. ++++++.|+. ...+.+||..+.+- +..+.. .....
T Consensus 194 d~~i~i~d~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~------Dg~i~iwd~~~~~~--~~~~~~--~~~v~-- 260 (340)
T 4aow_A 194 DKLVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGK------DGQAMLWDLNEGKH--LYTLDG--GDIIN-- 260 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET------TCEEEEEETTTTEE--EEEEEC--SSCEE--
T ss_pred CCEEEEEECCCCceeeEecCCCCc-EEEEEECCCCCEEEEEeC------CCeEEEEEeccCce--eeeecC--CceEE--
Confidence 367888888776653321111100 0122222 3455555553 24588888876532 111111 11111
Q ss_pred ceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 201 WLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 201 ~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.++...+..++.++..+.|..||+.+..
T Consensus 261 --~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 261 --ALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp --EEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred --eeecCCCCceeeccCCCEEEEEECCCCe
Confidence 3444444455566666788999987654
No 108
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=87.09 E-value=8.4 Score=32.39 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=69.3
Q ss_pred EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
.|+..+..+.+.+||..+++....-...... -..+... .+..++.|+.+ ..+.++|..+++-...-.. .
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~~~~-h 239 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQAFET-H 239 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEEECC-C
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEEecC-C
Confidence 3333334578999999887653221100000 0011111 23455555532 3488999888764332111 0
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
..... ++++. ++.+.+.++..+.|..||+.+..- +..+......... .......+|++++.|+...
T Consensus 240 --~~~v~----~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~-~~~~~s~~g~~l~~g~~d~---- 306 (354)
T 2pbi_B 240 --ESDVN----SVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGA-SSVDFSLSGRLLFAGYNDY---- 306 (354)
T ss_dssp --SSCEE----EEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCE-EEEEECTTSSEEEEEETTS----
T ss_pred --CCCeE----EEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccce-eEEEEeCCCCEEEEEECCC----
Confidence 11111 34443 455666777778899999986541 1111111000011 1111233677777775433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
.+.||.+.
T Consensus 307 -~i~vwd~~ 314 (354)
T 2pbi_B 307 -TINVWDVL 314 (354)
T ss_dssp -CEEEEETT
T ss_pred -cEEEEECC
Confidence 38889875
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=87.06 E-value=12 Score=32.61 Aligned_cols=182 Identities=8% Similarity=-0.066 Sum_probs=83.5
Q ss_pred CEEEEEc-CCceeeeecCCCCceeec-CCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHV-DAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~l-p~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
+.+++.| ..+.+.+||..+++.... ....... -..++..+.+.++.|+. ...+.+||..+++-...-....
T Consensus 210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~sd~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~ 282 (450)
T 2vdu_B 210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-VSSICCGKDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNS 282 (450)
T ss_dssp CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC-EEEEEECSTTEEEEEES------SSEEEEEETTTCCEEEEEECHH
T ss_pred CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc-eEEEEECCCCEEEEEeC------CCeEEEEECCCCcEeeeecchh
Confidence 5444444 346899999877654321 1111110 01222224555555542 2468899988776432211000
Q ss_pred ---ccc---------------cCccccceeEEEe--CCEEEEEecccceEEEeeC--CC-CCccCCCcCCCCCcccceee
Q 040781 192 ---VLK---------------DSAASTWLSVAVN--SRQLYVTEKYSGITVSFDP--ST-KGWSGPFHLRQFDHEKKVFY 248 (316)
Q Consensus 192 ---~~~---------------~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~--~~-~~W~~~~~l~~~~~~~~~~~ 248 (316)
... ........+++.. +..+++.+...+.|..||+ .+ ..+..+..++.+ ...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v-- 357 (450)
T 2vdu_B 283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNV-- 357 (450)
T ss_dssp HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCE--
T ss_pred hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---Cce--
Confidence 000 0000001123333 4455665546678999998 32 233323222222 111
Q ss_pred eeeEeeCCEEEEEecCCCCC--CcceeeEEEeeccCCchhhhhhcC-----CCcHHHHHHHhcCCcceee
Q 040781 249 SVITFANDRLIAVGLTGEAE--DVKSLKIWQVNIKGGSLEELKEIG-----EMPKALLEKLKGNKRSAVE 311 (316)
Q Consensus 249 ~~l~~~~g~L~v~g~~~~~~--~~~~~~iw~l~~~~~~~~~W~~i~-----~~p~~~~~~~~~~~~~~~~ 311 (316)
..+....+.+++........ ....+++|.++ ..+.+ |+ +. .+-.++....-..+.+.++
T Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (450)
T 2vdu_B 358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN--LNENS-FV-VNNEKSNEFDSAIIQSVQGDSNLVTK 423 (450)
T ss_dssp EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE--TTTTE-EE-ECHHHHHHHHHHHHHHHTTCTTTEEC
T ss_pred EEEEecCCcEEEEEecccCCCCCCcceEEEEEE--cCCCe-EE-EccccCcchhHHHHHhhhcCCccccc
Confidence 23333446677665443211 23448999998 43322 53 21 2233555555555555443
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=86.87 E-value=11 Score=30.46 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=52.0
Q ss_pred cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
.+++ +.+|..+.+.+||..|++...+-........ ..++.. +++.++.|+. ...+.++|..+++-.....
T Consensus 35 ~~~~-lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~------Dg~v~iw~~~~~~~~~~~~- 106 (318)
T 4ggc_A 35 SGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLRNMT- 106 (318)
T ss_dssp TTSE-EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEE-
T ss_pred CCCE-EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC------CCcEEEeecCCceeEEEec-
Confidence 3454 4455446899999999887554221111111 122222 3456666653 2458889988765322110
Q ss_pred CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+... ....... +.+.+.++..+.+..++..+..
T Consensus 107 ----~h~~~--~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 107 ----SHSAR--VGSLSWN-SYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp ----CCSSC--EEEEEEE-TTEEEEEETTSEEEEEETTSSS
T ss_pred ----Cccce--EEEeecC-CCEEEEEecCCceEeeecCCCc
Confidence 11111 0122223 3444455555666777766554
No 111
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=86.72 E-value=9.1 Score=31.56 Aligned_cols=103 Identities=9% Similarity=0.067 Sum_probs=51.6
Q ss_pred CEEEEEcC----CceeeeecCCCCceeecCCCCCCCCCCEEEEEC----CEEEEEcCcCCCCCCCcEEEEEeCCCCC--e
Q 040781 114 TLLYTLSP----SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVG----DKVVVAGGACDFEDDPLAVEMYSVDTRT--W 183 (316)
Q Consensus 114 ~~l~~~gg----~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~----~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W 183 (316)
..+++.|+ .+.+.+||..+++...+........-..++... ..+++.|+.+ ..+.+||..++. -
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 104 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPEMPV 104 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCSSCS
T ss_pred ceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCCccE
Confidence 34455552 478999999887765432111111111122221 2555555432 348888887765 1
Q ss_pred eecCCCCcccccCccccceeEEE-------eCCEEEEEecccceEEEeeCCCCC
Q 040781 184 EICQSMPAVLKDSAASTWLSVAV-------NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..+... ... ..++.. .++.+.+.++..+.|..||+.+..
T Consensus 105 ~~~~~~------~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 105 YSVKGH------KEI--INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp EEECCC------SSC--EEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred EEEEec------ccc--eEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 111111 000 002211 235556666677789999998765
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=86.64 E-value=4.3 Score=38.43 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=53.6
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+..++..+..+.+.+||..++++..+......... ..+... + .+.++.|+. ...+.+||..++.-.....
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~------dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCSSSCCCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC------CCcEEEEEeecCCCcceeE
Confidence 34444444457899999998876554322211111 122222 1 445555652 2458889887663211110
Q ss_pred CCcccccCccccceeEEEe--------------CCEEEEEecccceEEEeeCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--------------SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--------------~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
+. .+.. ...+++.. ++.+.+.++..+.|..||+.+.
T Consensus 141 ~~---~~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 141 ID---AHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp EE---CCSS--CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred ee---cCCC--ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 00 0000 01123332 2556666667778999998765
No 113
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=86.62 E-value=13 Score=32.09 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=58.9
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~ 189 (316)
..+.||+.. +...+.++|+.+++...+........ .++..-+..+|+..... ...+.+++..++. .+.+...
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~~~~~~~~g~~ 213 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG-----THTVYVYMKASGWAPTRIGQL 213 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST-----TCEEEEEEGGGTTCEEEEEEC
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC-----CceEEEEEcCCCceeEEeeec
Confidence 446788876 44789999999887766532211111 22211234566654211 1267788876543 2233111
Q ss_pred CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781 190 PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
+........ ++++. ++.+|+... .+.|..||+.+...
T Consensus 214 ~~~~~~~p~----~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 214 GSTFSGKIG----AVALDETEEWLYFVDS-NKNFGRFNVKTQEV 252 (409)
T ss_dssp CTTSCSCCC----BCEECTTSSEEEEECT-TCEEEEEETTTCCE
T ss_pred cchhcCCcE----EEEEeCCCCeEEEEEC-CCcEEEEECCCCCE
Confidence 110011112 44554 588999654 56899999987763
No 114
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=86.60 E-value=4.7 Score=33.76 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=53.7
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
|.+++.| ..+.+.+||..++.+............. .++.. +++.++.|+.+ ..+.++|..++.++.+..+
T Consensus 28 g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECCC-EEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccCCCeEEEEEc
Confidence 3334444 4578999998887764321111111111 22222 34555555532 3477888777766544322
Q ss_pred CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781 190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.. +... ..++++. ++.+.+.++..+.|..||+.++
T Consensus 102 ~~---h~~~--v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 102 EG---HENE--VKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp CC---CSSC--EEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cC---CCCC--ceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 11 1110 1134444 4566667777788999998765
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=86.44 E-value=5.2 Score=33.01 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=53.9
Q ss_pred EEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 117 YTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 117 ~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
++.| ..+.+.+||..++....+..+.. .... .++.. +.++++.|+.+ ..+.++|..++.|.....+.
T Consensus 28 lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 28 LATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD------RKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT------SCEEEECCSSSCCCEEEEEC
T ss_pred EEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC------CEEEEEECCCCcceEEEEcc
Confidence 4444 34689999987765322211111 1111 22221 13445555432 44889999888776543221
Q ss_pred cccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCC-Cc
Q 040781 191 AVLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTK-GW 231 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~-~W 231 (316)
. ...... ++++.. +.+.+.++..+.|..||..++ .|
T Consensus 101 ~-h~~~V~----~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 101 G-HDSSVN----SVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp C-CSSCCC----EEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred C-CCCceE----EEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 1 011111 444442 566777777788899998765 35
No 116
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=86.42 E-value=15 Score=31.52 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=61.8
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.++.||... ..+.++.+++..+....+....... -.++++ .+..+|+.-. ....+++++.....-+.+..
T Consensus 126 ~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~-p~glavd~~~g~lY~~d~------~~~~I~~~~~dg~~~~~l~~ 198 (386)
T 3v65_B 126 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES-PGGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLW 198 (386)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC-CCCEEEETTTTEEEEEET------TTTEEEECBTTSCSCEEEEC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC-ccEEEEEeCCCeEEEEcC------CCCeEEEEeCCCCceEEeec
Confidence 357888876 4578999999877655442211111 123333 3678888753 22467888776543222211
Q ss_pred CCcccccCccccceeEEEe--CCEEEEEeccc-ceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKYS-GITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~i~~yD~~~~~ 230 (316)
- . ..... ++++. ++.+|+..... +.|..+|+....
T Consensus 199 ~-~--l~~P~----giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 199 Q-S--LEKPR----AIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp S-S--CSCEE----EEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred C-C--CCCCc----EEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 0 0 01112 67776 78999988654 789999987644
No 117
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=86.33 E-value=12 Score=30.36 Aligned_cols=105 Identities=7% Similarity=0.044 Sum_probs=50.5
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEEC---CEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALVG---DKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQ 187 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~ 187 (316)
+.+++.| ..+.+.+||..++++..+......... ..++... +.+++.|+. ...+.+||..++. +....
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~------d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS------DGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEEBCSSSCBCCEE
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC------CCcEEEEEecCCCceeeee
Confidence 3334444 457899999988876554221111111 1222221 344555542 2457888877652 32110
Q ss_pred CCCcccccCccccceeEEEe--------------CCEEEEEecccceEEEeeCCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVN--------------SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~--------------~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+ . .+... ..+++.. ++.+.+.++..+.|..||+.+..
T Consensus 141 -~-~--~h~~~--v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 141 -I-D--AHAIG--VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp -E-E--CCSSC--EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred -e-e--cccCc--cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 0 0 00000 0012221 13566777777888999987543
No 118
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=86.29 E-value=6.5 Score=32.13 Aligned_cols=131 Identities=8% Similarity=-0.059 Sum_probs=64.1
Q ss_pred ceEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC---EEEE-ECCEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP---VVAL-VGDKV 157 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~---~~~~-~~~~v 157 (316)
.++.||+..+....... +. ..........|.+++.. ...++++|+.+++...+.......... .++. -++++
T Consensus 36 ~i~~~d~~~~~~~~~~~-~~--~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l 111 (297)
T 3g4e_A 36 KVCRWDSFTKQVQRVTM-DA--PVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRY 111 (297)
T ss_dssp EEEEEETTTCCEEEEEC-SS--CEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCE
T ss_pred EEEEEECCCCcEEEEeC-CC--ceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCE
Confidence 36778887765544421 21 11122222334344443 358999999999887664321111111 1222 24566
Q ss_pred EEEcCcCC-----CCCCCcEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeC
Q 040781 158 VVAGGACD-----FEDDPLAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDP 226 (316)
Q Consensus 158 ~~~gg~~~-----~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~ 226 (316)
++...... .......+..++.. ++-..+ ..+ . ... ++++. +..+|+.....+.|..||.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~----~-~pn----gi~~spdg~~lyv~~~~~~~i~~~~~ 178 (297)
T 3g4e_A 112 FAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQV----D-ISN----GLDWSLDHKIFYYIDSLSYSVDAFDY 178 (297)
T ss_dssp EEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEE----S-BEE----EEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred EEecCCcccccccccCCCcEEEEEECC-CCEEEEeecc----c-ccc----ceEEcCCCCEEEEecCCCCcEEEEec
Confidence 65431110 00122346666654 233322 111 1 111 45554 4579999887788999986
No 119
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=86.09 E-value=12 Score=30.29 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=53.4
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEEC---CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALVG---DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
|..++.| ..+.+.+||..++..+.+..+. ..... .++... .++++.|+. ...+.++|..++.|..+.
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~------D~~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSY------DGKVMIWKEENGRWSQIA 93 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEET------TTEEEEEEBSSSCBCCCE
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcC------CCEEEEEEcCCCceEEEE
Confidence 3334444 3478999987654332221111 11111 222211 345555542 255889999888776543
Q ss_pred CCCcccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.+.. +... ..++++.. +.+.+.++..+.|..||+.+.
T Consensus 94 ~~~~---h~~~--v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 94 VHAV---HSAS--VNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EECC---CSSC--EEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred Eeec---CCCc--eeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 2211 1110 11344432 556666777788999998765
No 120
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.03 E-value=13 Score=30.46 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=53.0
Q ss_pred CC-EEEEEcCCceeeeecC-CCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-------e
Q 040781 113 ST-LLYTLSPSKLSFSFDP-LHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-------W 183 (316)
Q Consensus 113 ~~-~l~~~gg~~~~~v~np-~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-------W 183 (316)
+. .++..+..+.+.+||. .+++...+........-..+.......++.++. ...+.+||..+.. .
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW------DGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET------TSEEEEECHHHHTTBCEEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcC------CCeEEEEcccccccccccccC
Confidence 45 4444444578999999 888776664310111111233332344444442 2457888766400 1
Q ss_pred eecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCC
Q 040781 184 EICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~ 228 (316)
+.+..+.. .... .++++.++. .+.+...+.|..||+.+
T Consensus 142 ~~~~~~~~--~~~v----~~~~~~~~~-l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 142 LNSNNTKV--KNKI----FTMDTNSSR-LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp SCSSSSSS--CCCE----EEEEECSSE-EEEEESTTEEEEEESSC
T ss_pred CeeeEEee--CCce----EEEEecCCc-EEEEeCCCeEEEEECCc
Confidence 22222211 1111 255666666 55555667899999987
No 121
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=85.95 E-value=13 Score=34.10 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=63.6
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCC---CC---CCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV---WR---TDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT- 182 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~---~~---~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~- 182 (316)
.++.||+.+..+.++.+|..|++ |+.-...+. .. ...+.++.+++||+... ...+..+|..|++
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~~TG~~ 139 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNKNTGKV 139 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEESSSCCE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEEECCCCCE
Confidence 57888988764469999999886 655322111 00 11233457888887532 2457888988875
Q ss_pred -eeecCCCCcccccCccccceeEEEeCC------EEEEEec-----ccceEEEeeCCCCC--cc
Q 040781 183 -WEICQSMPAVLKDSAASTWLSVAVNSR------QLYVTEK-----YSGITVSFDPSTKG--WS 232 (316)
Q Consensus 183 -W~~~~~~p~~~~~~~~~~~~~~~~~~~------~~y~~~~-----~~~~i~~yD~~~~~--W~ 232 (316)
|+.-..-+........ +.++.++ .+|+... ..+.|.+||..+++ |+
T Consensus 140 ~W~~~~~~~~~~~~~~~----sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 140 VWKKKFADHGAGYTMTG----APTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp EEEEECSCGGGTCBCCS----CCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred EeeecCCCCCcCccccc----CCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 8764221110001111 2334455 7777432 35689999998765 75
No 122
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.52 E-value=16 Score=34.49 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+..|...+..+.+.+||..+++... +...... -..++.. +++.++.|+ ....+.+||..++ |.....+.
T Consensus 67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~-~~~~~~~~ 137 (814)
T 3mkq_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHPTKPYVLSGS------DDLTVKLWNWENN-WALEQTFE 137 (814)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSEEEEEE------TTSEEEEEEGGGT-SEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--EEEEEEeCCCCEEEEEc------CCCEEEEEECCCC-ceEEEEEc
Confidence 4555444456789999998887543 2111110 0122222 333444444 2245888988765 22211110
Q ss_pred cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. .... ..+++.. ++.+.+.++..+.|..||+.+..
T Consensus 138 ~-~~~~----v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 174 (814)
T 3mkq_A 138 G-HEHF----VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (814)
T ss_dssp C-CSSC----EEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred C-CCCc----EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 0 0111 1144554 35667777777889999987654
No 123
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=85.45 E-value=1.5 Score=36.81 Aligned_cols=106 Identities=12% Similarity=0.159 Sum_probs=55.7
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG 233 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~ 233 (316)
+++++.|+. ...+.+||..+++++.+..+.. ...... ++++. ++.+.+.++..+.|..||+.++++..
T Consensus 20 ~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~----~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 20 RTQIAICPN------NHEVHIYEKSGNKWVQVHELKE-HNGQVT----GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp SSEEEEECS------SSEEEEEEEETTEEEEEEEEEC-CSSCEE----EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCEEEEEeC------CCEEEEEeCCCCcEEeeeeecC-CCCccc----EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence 445555542 2568999998887766543321 011111 34444 45556666667789999998876543
Q ss_pred CCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 234 PFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 234 ~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
...+... ..... +.....+++++++++... .+.+|.++
T Consensus 89 ~~~~~~~--~~~v~-~~~~~~~~~~l~~~~~d~-----~v~i~d~~ 126 (372)
T 1k8k_C 89 TLVILRI--NRAAR-CVRWAPNEKKFAVGSGSR-----VISICYFE 126 (372)
T ss_dssp EEECCCC--SSCEE-EEEECTTSSEEEEEETTS-----SEEEEEEE
T ss_pred eEEeecC--CCcee-EEEECCCCCEEEEEeCCC-----EEEEEEec
Confidence 2212211 01111 111123455555554332 28888887
No 124
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=85.37 E-value=6.6 Score=33.41 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=70.7
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCC---CCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWR---TDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~---~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
+.+++.+ ..+.+.+||..+++....-...... ... .++.. +..+++.++.++. ...+.+||..+..- .
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~-~ 253 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT-P 253 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS-C
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC-C
Confidence 3444444 4578999999887653321111100 111 22222 2245555543211 12577888877531 1
Q ss_pred cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCC-EEEEEe
Q 040781 186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAND-RLIAVG 262 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g-~L~v~g 262 (316)
+..+.. .+ .....++++. ++.+.+.++..+.|..||+.+.+- +..+.... .... .....-++ ++++.+
T Consensus 254 ~~~~~~--~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~--~~v~-~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 254 LQTLNQ--GH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARG--NWCF-KTKFAPEAPDLFACA 324 (416)
T ss_dssp SBCCCS--CC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSS--SCCC-CEEECTTCTTEEEEC
T ss_pred cEEeec--Cc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCC--CceE-EEEECCCCCCEEEEE
Confidence 111110 01 1111244543 566777777778899999987641 22122110 1111 11112234 566666
Q ss_pred cCCCCCCcceeeEEEee
Q 040781 263 LTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 263 ~~~~~~~~~~~~iw~l~ 279 (316)
+... .+.||.++
T Consensus 325 ~~d~-----~i~iw~~~ 336 (416)
T 2pm9_A 325 SFDN-----KIEVQTLQ 336 (416)
T ss_dssp CSSS-----EEEEEESC
T ss_pred ecCC-----cEEEEEcc
Confidence 5433 38999997
No 125
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.28 E-value=13 Score=29.85 Aligned_cols=139 Identities=9% Similarity=0.019 Sum_probs=65.2
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP 190 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p 190 (316)
+..++..+..+.+.+||..+ ....+....... -..++. -+.+ ++.|+. ...+.+||..+++-... ...
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~~~~~- 224 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDK-VIKTFSGIHNDV-VRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRTYEGH- 224 (313)
T ss_dssp TTEEEEEETTSCEEEEETTE-EEEEECSSCSSC-EEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEEEECC-
T ss_pred CCEEEEEECCCCEEEEecCc-eEEEEeccCccc-EEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhhhhcC-
Confidence 45544444457889998322 122221111111 112222 3456 444542 24588999887642211 111
Q ss_pred cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
... ..++++..+..++.++..+.|..||+.+.+-... +..+. .... ......+++++ +++...
T Consensus 225 ---~~~----i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~--~~i~-~~~~~~~~~~~-~~~~dg---- 287 (313)
T 3odt_A 225 ---ESF----VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQV--ITLPA--ISIW-SVDCMSNGDII-VGSSDN---- 287 (313)
T ss_dssp ---SSC----EEEEEECTTSCEEEEETTSEEEEECTTTCCEEEE--EECSS--SCEE-EEEECTTSCEE-EEETTS----
T ss_pred ---Cce----EEEEEEecCCCEEEEecCCEEEEEECCCCceeEE--EeccC--ceEE-EEEEccCCCEE-EEeCCC----
Confidence 111 1144444332455666778899999987763221 22220 1111 11223356654 443332
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
.+.+|.++
T Consensus 288 -~i~iw~~~ 295 (313)
T 3odt_A 288 -LVRIFSQE 295 (313)
T ss_dssp -CEEEEESC
T ss_pred -cEEEEeCC
Confidence 39999998
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=85.24 E-value=15 Score=30.47 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=74.9
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCee--ecCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWE--ICQSM 189 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~--~~~~~ 189 (316)
+.+++.+ ..+.+.+||..+++...+...........++.. ++++++.|+.+ ..+.+||..+++-. .+..
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~~- 211 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRFPV- 211 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEECCC-
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEEec-
Confidence 4444444 347899999988876443211111112233333 45667766533 45899999876532 1111
Q ss_pred CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCC-CcccceeeeeeE-eeCCEEEEEecCCC
Q 040781 190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF-DHEKKVFYSVIT-FANDRLIAVGLTGE 266 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~-~~~~~~~~~~l~-~~~g~L~v~g~~~~ 266 (316)
.+.. ...++++. ++.+.+.++ .+.|..||+.+..- +..+..- ..........+. ..+|+.+++++.++
T Consensus 212 ----~h~~--~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 212 ----DEEA--KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG--TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp ----CTTS--CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT--CBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred ----cCCC--CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc--ceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 0111 11244554 344444444 45899999987651 1112210 000011101122 33566666643212
Q ss_pred CCCcceeeEEEeeccCCchhhhhh
Q 040781 267 AEDVKSLKIWQVNIKGGSLEELKE 290 (316)
Q Consensus 267 ~~~~~~~~iw~l~~~~~~~~~W~~ 290 (316)
..+.||.++ ... +.|..
T Consensus 283 ----~~i~v~~~~--~~~-~~~~~ 299 (343)
T 3lrv_A 283 ----NSLTIYKFD--KKT-KNWTK 299 (343)
T ss_dssp ----TEEEEEEEC--TTT-CSEEE
T ss_pred ----CcEEEEEEc--ccc-cceEe
Confidence 239999997 433 33765
No 127
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=85.23 E-value=14 Score=34.95 Aligned_cols=139 Identities=9% Similarity=0.021 Sum_probs=71.9
Q ss_pred eEEeeCCCCceeEccCCCCCCccce--eeeecCCEEEEEcCCceeeeecCCCCceeecCCCCC--CCCCCEEEE---ECC
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFL--LRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRV--WRTDPVVAL---VGD 155 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~--~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~--~~~~~~~~~---~~~ 155 (316)
+..||+..+++..... +.++.... ......+.|++-.. +.+++||+.++++..+..... .......+. .++
T Consensus 429 l~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 429 ISYYNTRLKKFQIIEL-EKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG 506 (781)
T ss_dssp EEEECSSSCEEEECCS-TTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred EEEEcCCCCcEEEecc-CCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC
Confidence 4456666666665531 11111111 21223466666544 679999999998877642220 011222221 134
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGP 234 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~ 234 (316)
.+++... ...+..||..+++++..... ...... ...+++.. +|.+|+... .+.|..||+.++++..+
T Consensus 507 ~lWigt~-------~~Gl~~~~~~~~~~~~~~~~-~~l~~~---~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 507 RFWIGTF-------GGGVGIYTPDMQLVRKFNQY-EGFCSN---TINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVF 574 (781)
T ss_dssp CEEEEES-------SSCEEEECTTCCEEEEECTT-TTCSCS---CEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEE
T ss_pred CEEEEEc-------CCCEEEEeCCCCeEEEccCC-CCCCCC---eeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEc
Confidence 5555421 12367789988888776321 101111 11134443 577888664 34449999999887654
Q ss_pred C
Q 040781 235 F 235 (316)
Q Consensus 235 ~ 235 (316)
.
T Consensus 575 ~ 575 (781)
T 3v9f_A 575 Q 575 (781)
T ss_dssp C
T ss_pred c
Confidence 3
No 128
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=85.18 E-value=8.9 Score=32.50 Aligned_cols=109 Identities=9% Similarity=-0.045 Sum_probs=49.7
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
..|+..+..+.+.+||...+....+...... -..++.. +.+.++.++. ...+.+||..+++-...-..+..
T Consensus 121 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNKTGALLNVLNFHRAP--IVSVKWNKDGTHIISMDV------ENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCCSC--EEEEEECTTSSEEEEEET------TCCEEEEETTTTEEEEEECCC--
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeeccCCCcc--EEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEeecccc
Confidence 3443333457899999433333334211111 1122222 2344444432 23478888877654332111110
Q ss_pred ccc--------CccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 193 LKD--------SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 193 ~~~--------~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
... ........++...+..++.++..+.|..||+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 238 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT 238 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc
Confidence 000 00000113333434446666677789999998764
No 129
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=85.17 E-value=16 Score=30.85 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=53.8
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCcc
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWS 232 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~ 232 (316)
++.++.|+.+ ..+.++|..++.-... ...+.. .........++++. ++.+.+.+...+.|..||..+.+-.
T Consensus 261 ~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 261 GQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDR-NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp SSEEEEECSS------SCEEEEETTTTEEEEEECCCCSS-SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred CCeEEEEcCC------CeEEEEECCCCcEEEEecccccc-cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 4555555532 3488888887653222 111110 00000001134443 5666667777788999998766521
Q ss_pred -CCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 233 -GPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 233 -~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.+..+... ...... +.....+|+.++.|+.+.. +.||.+.
T Consensus 334 ~~~~~~~~~-h~~~v~-~l~~s~dg~~l~sgs~D~~-----i~iW~~~ 374 (380)
T 3iz6_a 334 LNLGTLQNS-HEGRIS-CLGLSSDGSALCTGSWDKN-----LKIWAFS 374 (380)
T ss_dssp EEECCSCSS-CCCCCC-EEEECSSSSEEEEECTTSC-----EEEEECC
T ss_pred EEEecccCC-CCCceE-EEEECCCCCEEEEeeCCCC-----EEEEecC
Confidence 11111111 001111 1122346666666654433 9999987
No 130
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=85.11 E-value=13 Score=30.51 Aligned_cols=137 Identities=9% Similarity=-0.077 Sum_probs=68.3
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEc-CC----ceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CC
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLS-PS----KLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GD 155 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~g-g~----~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~ 155 (316)
+..+|+..++...+.. ...........+..|.+++.+ +. ..++++|+.++.... +........-..++.. ++
T Consensus 68 i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 68 IFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp EEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred EEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence 6678887766654421 111111122233345566654 32 479999999887653 2211111111122222 35
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~ 228 (316)
++++.............+..||..+++.+.+..- ..... ++++. +..+|+.....+.|..||+.+
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~----~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISVAN----GIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESSEE----EEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCccc----ceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 6666542111111234677888877666544210 00111 34443 346888876667889999864
No 131
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=84.79 E-value=7.7 Score=31.68 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=52.2
Q ss_pred CCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+..|...+..+.+.+||..+++... +.... . .-..++.. +.+.++.|+.+ ..+.++|..++. .....+.
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~-~~~~~~~ 137 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-D-YIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNW-ALEQTFE 137 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECCS-S-CEEEEEECSSSSEEEEEETT------SCEEEEEGGGTT-EEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEeCCC-C-cEEEEEEcCCCCEEEEECCC------CeEEEEECCCCc-chhhhhc
Confidence 3444433345789999998876432 21100 0 00122222 23455555432 347888876541 1111110
Q ss_pred cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.. ...++++. ++.+.+.++..+.|..||+.+..
T Consensus 138 ---~h~~--~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~ 174 (304)
T 2ynn_A 138 ---GHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (304)
T ss_dssp ---CCCS--CEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred ---ccCC--cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 1111 11144554 45677777788899999987644
No 132
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=84.73 E-value=5.4 Score=32.68 Aligned_cols=100 Identities=8% Similarity=0.035 Sum_probs=50.9
Q ss_pred CEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP 190 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p 190 (316)
..|...+..+.+.+||..++.... +.....+ . ..+... +.+.++.|+. ...+.+||..+++=... ..-
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~-v-~~~~~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h- 96 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQVEVRSIQVTETP-V-RAGKFIARKNWIIVGSD------DFRIRVFNYNTGEKVVDFEAH- 96 (304)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSC-E-EEEEEEGGGTEEEEEET------TSEEEEEETTTCCEEEEEECC-
T ss_pred CEEEEEcCCCcEEEEECCCCceeEEeeccCCc-E-EEEEEeCCCCEEEEECC------CCEEEEEECCCCcEEEEEeCC-
Confidence 333333345789999998875432 2111111 0 012122 3344555542 35588999887652211 111
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
... ..++++. ++.+.+.++..+.|..||+.++
T Consensus 97 ---~~~----v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 97 ---PDY----IRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp ---SSC----EEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred ---CCc----EEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 111 1134444 3556666777788999998765
No 133
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=84.59 E-value=8.4 Score=31.40 Aligned_cols=20 Identities=30% Similarity=0.214 Sum_probs=15.2
Q ss_pred EEEEEecccceEEEeeCCCC
Q 040781 210 QLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 210 ~~y~~~~~~~~i~~yD~~~~ 229 (316)
.+.+.++..+.|..||+.+.
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEEEETTSCEEEEEEEEC
T ss_pred eEEEEEcCCCeEEEEeCCCC
Confidence 67777777778899988754
No 134
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=84.49 E-value=6.7 Score=33.09 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=51.3
Q ss_pred EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE----CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCC
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV----GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSM 189 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~----~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~ 189 (316)
.++..+..+.+.+||..+++....-..... ...+... +..+++.|+.+ ..+.+||..+++-... ...
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEET--VYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCC
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCc--eeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCC
Confidence 444444457899999988765443221111 1112111 22355555432 3488898876542211 111
Q ss_pred CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 190 PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
... ..++++. +..+++.++..+.|..||+.+..
T Consensus 186 ----~~~----v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 186 ----RQE----ILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp ----CSC----EEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred ----CCc----EEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 111 1133443 23366677777889999997654
No 135
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=84.48 E-value=6 Score=33.85 Aligned_cols=108 Identities=15% Similarity=0.018 Sum_probs=51.7
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP 190 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p 190 (316)
..|+..+..+.+.+||..+++....-... .....++.. +.++++.|+.+ ..+.+||..++.-... ....
T Consensus 178 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~ 249 (393)
T 1erj_A 178 DKLVSGSGDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSEN 249 (393)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC---
T ss_pred CEEEEecCCCcEEEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccc
Confidence 34333334578899998887654321111 111122222 45566666532 3488999887653222 1100
Q ss_pred cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..........++++. ++.+.+.++..+.|..||+.+..
T Consensus 250 ~-~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 250 E-SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred c-CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 0 001111111234444 45666677777889999997654
No 136
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=84.23 E-value=14 Score=31.41 Aligned_cols=149 Identities=11% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecC--CCCC--CCCCC--EEEEEC--CEEEEEcCcCCCCCCCcEEEEEeCCCCCe
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVD--APRV--WRTDP--VVALVG--DKVVVAGGACDFEDDPLAVEMYSVDTRTW 183 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp--~~~~--~~~~~--~~~~~~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W 183 (316)
++.+++.| ..+.+.+||..++....-. +... ..... .++... ..+++.|+.+ ..+.+||..+++.
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~ 166 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWDVGTGAA 166 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEETTTTEE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEECCCCCc
Confidence 34344444 4578999998887542110 0000 01111 222222 2355555432 3488999888754
Q ss_pred eecCC-CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcC-CCCCcccceeeeeeEeeCCEEEE
Q 040781 184 EICQS-MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHL-RQFDHEKKVFYSVITFANDRLIA 260 (316)
Q Consensus 184 ~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l-~~~~~~~~~~~~~l~~~~g~L~v 260 (316)
...-. ... ..... +++.. ++.+.+.++..+.|..||+.+.+- +..+ .... ...........+|++++
T Consensus 167 ~~~~~~~~~--~~~v~----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 167 VLTLGPDVH--PDTIY----SVDWSRDGALICTSCRDKRVRVIEPRKGTV--VAEKDRPHE--GTRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEECTTTC--CSCEE----EEEECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECSSC--SSSCCEEEECSTTEEEE
T ss_pred cEEEecCCC--CCceE----EEEECCCCCEEEEEecCCcEEEEeCCCCce--eeeeccCCC--CCcceEEEEcCCCcEEE
Confidence 33211 101 11111 34444 455666666778899999987652 1112 1110 01011122234677777
Q ss_pred EecCCCCCCcceeeEEEee
Q 040781 261 VGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 261 ~g~~~~~~~~~~~~iw~l~ 279 (316)
+|.... ....+.+|.+.
T Consensus 237 ~g~~~~--~d~~i~iwd~~ 253 (402)
T 2aq5_A 237 TGFSRM--SERQVALWDTK 253 (402)
T ss_dssp EEECTT--CCEEEEEEETT
T ss_pred EeccCC--CCceEEEEcCc
Confidence 763211 12347788776
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.18 E-value=12 Score=37.42 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=70.0
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPA 191 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~ 191 (316)
..+...+..+.+.+||..+++...+...... -..+... +.++ +.++. ...+.+||..+++-... ... .
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~l-~~~~~------dg~v~vwd~~~~~~~~~~~~~-~ 1085 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQET--VKDFRLLQDSRL-LSWSF------DGTVKVWNVITGRIERDFTCH-Q 1085 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEEECCBCCSSC--EEEEEECSSSEE-EEEES------SSEEEEEETTTTCCCEEEECC-S
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEecCCCc--EEEEEEcCCCcE-EEEEC------CCcEEEEECCCCceeEEEccc-C
Confidence 3443333457899999999877654321111 1122222 3344 33432 24588999887653221 111 0
Q ss_pred ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~ 270 (316)
. ... ++++. ++.+.+.++..+.|..||..+.. .+..+... ..... +.....+|++++.++...
T Consensus 1086 --~-~v~----~~~~s~d~~~l~s~s~d~~v~iwd~~~~~--~~~~l~~h--~~~v~-~~~~s~dg~~lat~~~dg---- 1149 (1249)
T 3sfz_A 1086 --G-TVL----SCAISSDATKFSSTSADKTAKIWSFDLLS--PLHELKGH--NGCVR-CSAFSLDGILLATGDDNG---- 1149 (1249)
T ss_dssp --S-CCC----CEEECSSSSSCEEECCSSCCCEECSSSSS--CSBCCCCC--SSCEE-EEEECSSSSEEEEEETTS----
T ss_pred --C-cEE----EEEECCCCCEEEEEcCCCcEEEEECCCcc--eeeeeccC--CCcEE-EEEECCCCCEEEEEeCCC----
Confidence 0 011 22232 45556666667788999987655 22222222 01111 122234666666665433
Q ss_pred ceeeEEEee
Q 040781 271 KSLKIWQVN 279 (316)
Q Consensus 271 ~~~~iw~l~ 279 (316)
.+.+|.++
T Consensus 1150 -~i~vwd~~ 1157 (1249)
T 3sfz_A 1150 -EIRIWNVS 1157 (1249)
T ss_dssp -CCCEEESS
T ss_pred -EEEEEECC
Confidence 28899887
No 138
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=83.97 E-value=6.8 Score=33.30 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=52.9
Q ss_pred CEEEEEc-CCceeeeecCCCC-----ceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCC---
Q 040781 114 TLLYTLS-PSKLSFSFDPLHL-----AWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRT--- 182 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~-----~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--- 182 (316)
+.+++.| ..+.+.+||..+. ....+..... .-..+... +.++++.|+.+ ..+.+||..++.
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLASGGNN------GEIFIWDMNKCTESP 150 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEEECSS------SCEEBCBTTTTSSCT
T ss_pred CCeEEEEccCCeEEEeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEEEcCC------CeEEEEECCCCcccc
Confidence 3333444 4468999998771 2233321111 11233333 24555555532 348888887764
Q ss_pred ---eee-cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 183 ---WEI-CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 183 ---W~~-~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
-.. ...... ...... ++++. ++.+++.++..+.|..||+.+.+
T Consensus 151 ~~~~~~~~~~~~~-~~~~v~----~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 199 (416)
T 2pm9_A 151 SNYTPLTPGQSMS-SVDEVI----SLAWNQSLAHVFASAGSSNFASIWDLKAKK 199 (416)
T ss_dssp TTCCCBCCCCSCC-SSCCCC----EEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred ccccccccccccC-CCCCee----EEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence 111 111100 011111 44444 25677777777889999998765
No 139
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=83.74 E-value=6.5 Score=32.13 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=55.7
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
++.||.++ ..+.++.|||.+++...+..... -.+++.. ++++++.. ...+.+||..+++.+.+...+
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAP---VSSVALRQSGGYVATI--------GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSSC---EEEEEEBTTSSEEEEE--------TTEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCCc---eEEEEECCCCCEEEEE--------CCeEEEEECCCCcEEEEEecC
Confidence 46666665 45789999999987654422111 1122222 34555442 145889999999887764322
Q ss_pred cccccCccccceeEEEe-CCEEEEEec-----------ccceEEEeeCCC
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEK-----------YSGITVSFDPST 228 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~-----------~~~~i~~yD~~~ 228 (316)
........ ..+++. +|.+|+... ..+.|+.+|+..
T Consensus 93 ~~~~~~~~---~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 93 NDKKNNRF---NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp TTCSSEEE---EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred CCCCCCCC---CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 11111100 134444 577887542 224678888753
No 140
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=83.70 E-value=4.9 Score=34.93 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=37.8
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC-CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM-PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~-p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
..+++.|+.+ ..+.++|..++.-...... .. ...-. ++++. ++.+.+.++..+.|..||++++..
T Consensus 132 ~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH--~~~V~----~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 132 PSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGA--GGSIT----GLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp TTCEEEEETT------SCEEEECSSCCSCCEEECCCSS--SCCCC----EEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEeCC------CEEEEEECCCCCceeEEEccCC--CCCEE----EEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 4456666532 3488888877654333211 11 11112 55554 456666777778899999987653
No 141
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=83.61 E-value=8.4 Score=31.86 Aligned_cols=63 Identities=6% Similarity=-0.041 Sum_probs=31.1
Q ss_pred CEEEEEcCCceeeeecCCC-Cce-eecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781 114 TLLYTLSPSKLSFSFDPLH-LAW-HHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t-~~w-~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~ 184 (316)
..++..+..+.+.+||..+ ++. ..+...... -..++.. +.+.++.++. ...+.+||..+++-.
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS--ISDMQFSPDLTYFITSSR------DTNSFLVDVSTLQVL 253 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEECCSSC--EEEEEECTTSSEEEEEET------TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc--eeEEEECCCCCEEEEecC------CceEEEEECCCCcee
Confidence 3444433457899999887 332 222111110 1122222 3444455542 245888998876543
No 142
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=83.29 E-value=5.8 Score=34.76 Aligned_cols=107 Identities=10% Similarity=0.135 Sum_probs=58.7
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
++.||+......+.++|+.++....+.+.. ..-..+++. +..+|+....... ....+.+++.. +.+.....++
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~~~~~~~l~ 223 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SGFKVITELT 223 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GTSCSEEEEE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cceeeeeeec
Confidence 577888763378999999988776653311 111123332 3458887632111 12345555543 3343111111
Q ss_pred cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..... ++++. ++.+|+.....+.|..||+.+..
T Consensus 224 ~--~~~p~----giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 224 K--GQNCN----GAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp E--CSSCC----CEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred c--CCCce----EEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 1 11112 55565 58899998777789999998765
No 143
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=83.23 E-value=20 Score=30.24 Aligned_cols=132 Identities=10% Similarity=0.033 Sum_probs=73.7
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeee-ecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRS-SHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVV 158 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~-s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~ 158 (316)
+..+++.......+. +.......+.. ...+.||... ..+.++.+++..+....+..... ..-.++++ .+..+|
T Consensus 55 I~~i~~~g~~~~~~~--~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-~~p~glavd~~~g~ly 131 (349)
T 3v64_C 55 IRQVLPHRSEYTLLL--NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-ESPGGLAVDWVHDKLY 131 (349)
T ss_dssp EEEECTTSCCEEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEE
T ss_pred eEEEeCCCCeeEEee--cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC-CCccEEEEecCCCeEE
Confidence 556666665554442 21111111221 2458888876 45789999998776554422111 11124444 367888
Q ss_pred EEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEeccc-ceEEEeeCCCCC
Q 040781 159 VAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYS-GITVSFDPSTKG 230 (316)
Q Consensus 159 ~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~i~~yD~~~~~ 230 (316)
+.-. ....+++++.....-+.+..- . ..... +++++ ++.+|+..... +.|..+|+....
T Consensus 132 ~~d~------~~~~I~~~~~dG~~~~~l~~~-~--l~~P~----~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 132 WTDS------GTSRIEVANLDGAHRKVLLWQ-S--LEKPR----AIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp EEET------TTTEEEEEETTSCSCEEEECT-T--CSCEE----EEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEcC------CCCeEEEEcCCCCceEEEEeC-C--CCCcc----eEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 8753 234688888775542322110 0 01112 67777 78999998655 789999987644
No 144
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=83.18 E-value=18 Score=29.86 Aligned_cols=132 Identities=8% Similarity=-0.020 Sum_probs=69.8
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEc-CCceeeeecCCC----CceeecCCCCCCCCCCEEEE--EC
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLS-PSKLSFSFDPLH----LAWHHVDAPRVWRTDPVVAL--VG 154 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~g-g~~~~~v~np~t----~~w~~lp~~~~~~~~~~~~~--~~ 154 (316)
+..+|........+- +.......+... .++.||... ..+.++++++.+ .....+-+.. ...-.++++ .+
T Consensus 12 I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavd~~~ 88 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIH 88 (316)
T ss_dssp EEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEETTT
T ss_pred EEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-CCCcCEEEEeecC
Confidence 566777766555442 221111122222 357888876 457899999876 2222221111 111234554 36
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEeccc-ceEEEeeCCCCC
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYS-GITVSFDPSTKG 230 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~i~~yD~~~~~ 230 (316)
..+|+.-. ....+++++.....=+.+... . ..... ++++. ++.+|+..... +.|..+|+....
T Consensus 89 ~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~-~--~~~P~----~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~ 154 (316)
T 1ijq_A 89 SNIYWTDS------VLGTVSVADTKGVKRKTLFRE-N--GSKPR----AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154 (316)
T ss_dssp TEEEEEET------TTTEEEEEETTSSSEEEEEEC-T--TCCEE----EEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CeEEEEEC------CCCEEEEEeCCCCceEEEEEC-C--CCCcc----eEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence 78888753 235688888875432222110 0 11112 66775 78999987543 689999987543
No 145
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=83.01 E-value=9.5 Score=31.37 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCC-CCCEEEEEC---CEEEEEcCcCCCCCCCcEEEEEeCCCC-Ceee
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWR-TDPVVALVG---DKVVVAGGACDFEDDPLAVEMYSVDTR-TWEI 185 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~-~~~~~~~~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~-~W~~ 185 (316)
+..|...+..+.+.+||..+++|..+....... .-..++... ..+++.|+.+ ..+.++|..++ .|..
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEV 142 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEE
T ss_pred CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCcce
Confidence 344433334578999999887765432111111 111333321 3455555532 34778887765 5754
No 146
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=82.96 E-value=8.7 Score=33.07 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=32.3
Q ss_pred CEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 209 RQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 209 ~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.+.+.++..+.|..||+.+..= +..+... .....+.....+|+.++.++... .+.+|.++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h---~~~v~~v~~~~~g~~l~s~s~D~-----~i~vwd~~ 368 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMC--LMTLVGH---DNWVRGVLFHSGGKFILSCADDK-----TLRVWDYK 368 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEE--EEEEECC---SSCEEEEEECSSSSCEEEEETTT-----EEEEECCT
T ss_pred CCEEEEEeCCCeEEEEECCCCce--EEEEECC---CCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECC
Confidence 55667777778899999987641 1111111 11111112233555555554333 38888776
No 147
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=82.95 E-value=17 Score=29.36 Aligned_cols=134 Identities=11% Similarity=0.025 Sum_probs=67.8
Q ss_pred eEEeeCCCCceeEccCCC----CCCccceeeeecC-CEEEEEcCCceeeeecCCCCceeec-CCCCC--C-CCCCEEEEE
Q 040781 83 AHAYDARSHVWIEIKNNQ----PSSFDFLLRSSHS-TLLYTLSPSKLSFSFDPLHLAWHHV-DAPRV--W-RTDPVVALV 153 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~----~~~~~~~~~~s~~-~~l~~~gg~~~~~v~np~t~~w~~l-p~~~~--~-~~~~~~~~~ 153 (316)
+..||+..+++..+.. + ............. +.+|+.+..+.+++||+. ++...+ ..... . ..-..++..
T Consensus 48 i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d 125 (314)
T 1pjx_A 48 ILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD 125 (314)
T ss_dssp EEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred EEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC
Confidence 6678877777665421 1 0001111222333 777777644589999998 777655 32111 1 111233332
Q ss_pred -CCEEEEEcCcCC---------CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-----CC-EEEEEecc
Q 040781 154 -GDKVVVAGGACD---------FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-----SR-QLYVTEKY 217 (316)
Q Consensus 154 -~~~v~~~gg~~~---------~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-----~~-~~y~~~~~ 217 (316)
++++++...... .......+..||.. ++...+.. . ..... ++++. ++ .+|+.+..
T Consensus 126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~--~~~~~----~i~~~~~~d~dg~~l~v~~~~ 196 (314)
T 1pjx_A 126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--A--FQFPN----GIAVRHMNDGRPYQLIVAETP 196 (314)
T ss_dssp TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--E--ESSEE----EEEEEECTTSCEEEEEEEETT
T ss_pred CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--C--CCCcc----eEEEecccCCCCCEEEEEECC
Confidence 456776653210 00112457778776 55443311 0 00111 44444 23 68888766
Q ss_pred cceEEEeeCC
Q 040781 218 SGITVSFDPS 227 (316)
Q Consensus 218 ~~~i~~yD~~ 227 (316)
.+.|..||+.
T Consensus 197 ~~~i~~~~~~ 206 (314)
T 1pjx_A 197 TKKLWSYDIK 206 (314)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEECC
Confidence 6788999976
No 148
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=82.90 E-value=2.6 Score=35.47 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=49.6
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeee
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYS 249 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~ 249 (316)
..+.++|..+++|.....+.. .+... ..++++. ++.+.+.++..+.|..||..++.+..+..+... ..... +
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~--~h~~~--v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h--~~~v~-~ 110 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSE--GHQRT--VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH--ENEVK-S 110 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECS--SCSSC--EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC--SSCEE-E
T ss_pred CeEEEEEcCCCcceeeeeecc--ccCCc--EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC--CCCce-E
Confidence 348888888887753321111 11111 1134443 456666677777889999887765433323322 01111 1
Q ss_pred eeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 250 VITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 250 ~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
....-+|++++.++... .+.+|.++
T Consensus 111 v~~sp~~~~l~s~s~D~-----~v~iwd~~ 135 (345)
T 3fm0_A 111 VAWAPSGNLLATCSRDK-----SVWVWEVD 135 (345)
T ss_dssp EEECTTSSEEEEEETTS-----CEEEEEEC
T ss_pred EEEeCCCCEEEEEECCC-----eEEEEECC
Confidence 11123566666665433 38888886
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=82.75 E-value=2.8 Score=35.05 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecc--cceEEEeeCCCCCccCCC
Q 040781 172 AVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKY--SGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 172 ~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~--~~~i~~yD~~~~~W~~~~ 235 (316)
.+..+|..+++++.+..... ..... .+++. ++.+|+.+.. .+.|..||+.+++.+.+.
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~--~~~p~----~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA--TQNPT----YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE--CSCCC----CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeec--cCCcc----eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee
Confidence 35556677788776532211 11111 33333 5668887643 568899999877755444
No 150
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=82.72 E-value=2.8 Score=35.59 Aligned_cols=103 Identities=6% Similarity=-0.041 Sum_probs=51.0
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCC----------CCCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPR----------VWRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVD 179 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~----------~~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~ 179 (316)
..|...+..+.+.+||..+++........ ...... .++.. +..+++.++ ....+.+||..
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~ 130 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS------FDKTLKVWDTN 130 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE------TTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe------CCCeEEEeeCC
Confidence 33333334567999988876543321100 011111 22222 333444444 23458899988
Q ss_pred CCCeeecCCCCcccccCccccceeEEEe----CCEEEEEecccceEEEeeCCCCC
Q 040781 180 TRTWEICQSMPAVLKDSAASTWLSVAVN----SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 180 t~~W~~~~~~p~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+++-......+. . .. .+... ++.+.+.++..+.|..||+.+..
T Consensus 131 ~~~~~~~~~~~~--~--~~----~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 131 TLQTADVFNFEE--T--VY----SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp TTEEEEEEECSS--C--EE----EEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CCccceeccCCC--c--ee----eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 765433322211 0 01 11111 34466666677789999998664
No 151
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=82.72 E-value=15 Score=33.03 Aligned_cols=104 Identities=9% Similarity=0.034 Sum_probs=53.8
Q ss_pred EEEEEcCCceeeeecCCCCceee-cCCCCCCC-CCCEEEEE-C-CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CC
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWR-TDPVVALV-G-DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SM 189 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~-~~~~~~~~-~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~ 189 (316)
.++..+..+.+.+||..+++... +....... .-..++.. + .+.++.|+.+ ..+.+||..+++-...- ..
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBT
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCEeEEeccc
Confidence 33333345789999987765432 22111100 11123232 3 4555555432 34889998876543221 10
Q ss_pred --CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 190 --PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 190 --p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.. ... ..++++.++.+.+.++..+.|..||+.+.+
T Consensus 249 ~~~~--~~~----v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 249 QEPV--QGG----IFALSWLDSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp TBCC--CSC----EEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred cccc--CCc----eEEEEEcCCCEEEEEcCCCcEEEEECCCCc
Confidence 11 111 113444356666666677789999998765
No 152
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.61 E-value=26 Score=32.98 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=52.3
Q ss_pred CEEEEEcCCceeeeecCCCC-ceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLSPSKLSFSFDPLHL-AWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~-~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
..|+..+..+.+.+||..++ .....-... ...-..++.. +...++.++. ...+.+||..++.-.......
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~~ 182 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDPSTFASGCL------DRTVKVWSLGQSTPNFTLTTG 182 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTSEEEEEEECC-SSCEEEEEEETTEEEEEEEEET------TSEEEEEETTCSSCSEEEECC
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcceeEEecC
Confidence 44444444578999998775 222211101 0111122333 3456666542 245889988665422211000
Q ss_pred cccccCccccceeEEEe---CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN---SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..... .++.. ++.+.+.++..+.|..||..+..
T Consensus 183 ~--~~~v~----~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 183 Q--ERGVN----YVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp C--TTCCC----EEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred C--CCCEE----EEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 0 01111 33333 56667777777889999997755
No 153
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=82.40 E-value=34 Score=32.40 Aligned_cols=158 Identities=9% Similarity=0.062 Sum_probs=82.6
Q ss_pred eEEeeCCCCceeEccCCC----CCC--ccceeeeecCCEEEEEcCCceeeeecCCCCceeecCC---CCCCCCCCEEEEE
Q 040781 83 AHAYDARSHVWIEIKNNQ----PSS--FDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDA---PRVWRTDPVVALV 153 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~----~~~--~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~---~~~~~~~~~~~~~ 153 (316)
+..||+..+++..... . ..+ ..........|.|++.+. +.+++||+.++++ .+.. ..........+..
T Consensus 473 l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~ 549 (795)
T 4a2l_A 473 LVRFNPEQRSFTTIEK-EKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIY 549 (795)
T ss_dssp EEEEETTTTEEEECCB-CTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEE
T ss_pred eeEEeCCCCeEEEccc-cccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEE
Confidence 5567887777766532 1 000 011122223456666544 5799999998887 4321 1111112222222
Q ss_pred ---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC---CCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeC
Q 040781 154 ---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDP 226 (316)
Q Consensus 154 ---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~ 226 (316)
++.+++... ..+..||+.+++++... .+|. . ...+++.. +|.+|+.+. +.|..||+
T Consensus 550 ~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~--~-----~i~~i~~d~~g~lWi~t~--~Gl~~~~~ 612 (795)
T 4a2l_A 550 EASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPN--N-----VVYGILEDSFGRLWLSTN--RGISCFNP 612 (795)
T ss_dssp ECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSC--S-----CEEEEEECTTSCEEEEET--TEEEEEET
T ss_pred ECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCch--h-----heEEEEECCCCCEEEEcC--CceEEEcC
Confidence 345665431 13778999888887653 2332 1 11244444 578888764 36799999
Q ss_pred CCCCccCCCc---CCCCCccccee-eeeeEeeCCEEEEEecC
Q 040781 227 STKGWSGPFH---LRQFDHEKKVF-YSVITFANDRLIAVGLT 264 (316)
Q Consensus 227 ~~~~W~~~~~---l~~~~~~~~~~-~~~l~~~~g~L~v~g~~ 264 (316)
.++++..+.. ++.. ... ...+...+|+|++.+..
T Consensus 613 ~~~~~~~~~~~dGl~~~----~f~~~~~~~~~~G~l~~g~~~ 650 (795)
T 4a2l_A 613 ETEKFRNFTESDGLQSN----QFNTASYCRTSVGQMYFGGIN 650 (795)
T ss_dssp TTTEEEEECGGGTCSCS----CEEEEEEEECTTSCEEEEETT
T ss_pred CCCcEEEcCCcCCCccc----cCccCceeECCCCeEEEecCC
Confidence 9988764431 2211 111 12233446777776643
No 154
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=81.43 E-value=21 Score=29.43 Aligned_cols=149 Identities=8% Similarity=0.050 Sum_probs=77.5
Q ss_pred CCEEEEEc--CCceeeeecCCCCceeecCCCC-------CCCC-CCEEEEE-C-CEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781 113 STLLYTLS--PSKLSFSFDPLHLAWHHVDAPR-------VWRT-DPVVALV-G-DKVVVAGGACDFEDDPLAVEMYSVDT 180 (316)
Q Consensus 113 ~~~l~~~g--g~~~~~v~np~t~~w~~lp~~~-------~~~~-~~~~~~~-~-~~v~~~gg~~~~~~~~~~v~vy~~~t 180 (316)
++.+|+.. +...+.+||+.......+.... .... -.++++. + ..+|+... ....+.+||..+
T Consensus 154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~------~~~~I~~~~~~~ 227 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR------ENGRIQCFKTDT 227 (329)
T ss_dssp TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET------TTTEEEEEETTT
T ss_pred CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC------CCCEEEEEECCC
Confidence 67788876 3678999996544334342111 0001 1234443 2 78888864 235699999987
Q ss_pred CCeeecCCCCcccccCccccceeEEEeCCEEEEEec-------ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEe
Q 040781 181 RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-------YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITF 253 (316)
Q Consensus 181 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-------~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~ 253 (316)
++....-..+. ...... ++++..+.+|...+ ....|..||+.+++.... +.........-....+.
T Consensus 228 G~~~~~~~~~~-~~~~~~----~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~--~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 228 KEFVREIKHAS-FGRNVF----AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV--FKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp CCEEEEECCTT-TTTCEE----EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE--ECCSSSCCSSEEEEEEC
T ss_pred CcEEEEEeccc-cCCCcc----eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE--EcCCCCccCCeeEEEEC
Confidence 77644322111 011111 34444455555554 334789999887764322 11100000111112234
Q ss_pred eCCEEEEEecCCCCCCcceeeEEEee
Q 040781 254 ANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 254 ~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.+|.||+...... .|.+|.++
T Consensus 301 ~dG~lyvad~~~~-----~I~~~~~~ 321 (329)
T 3fvz_A 301 EDGTVYIGDAHTN-----TVWKFTLT 321 (329)
T ss_dssp TTSEEEEEESSSC-----CEEEEEEE
T ss_pred CCCCEEEEECCCC-----EEEEEeCC
Confidence 4678888875433 37778776
No 155
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=81.38 E-value=0.97 Score=38.31 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=31.9
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC-ccCCC
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG-WSGPF 235 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~-W~~~~ 235 (316)
..+.+||..++.|+.+..+.. ...... ++++. ++.+.+.++..+.|..||+.++. |....
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~-h~~~v~----~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSD-HDKIVT----CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCC-CSSCEE----EEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred CEEEEEEccCCceEEEEEEec-CCceEE----EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence 347788888888877655422 011111 34444 45566666677789999998876 54433
No 156
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=81.00 E-value=22 Score=29.24 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=72.0
Q ss_pred CEEEEEcCCceeeeecCCCCce-eecCCCCCC-CCC--CEEEEE-C----CEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAW-HHVDAPRVW-RTD--PVVALV-G----DKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w-~~lp~~~~~-~~~--~~~~~~-~----~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~ 184 (316)
..++..++.+.+.+||..+++. ..+.....+ ... ..++.. + +++++.|+. ...+.+||..+++=.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~ 108 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS------RGIIRIINPITMQCI 108 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET------TCEEEEECTTTCCEE
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC------CCEEEEEEchhceEe
Confidence 4455555556899999887654 233211111 111 122222 2 456666653 245889998775422
Q ss_pred ecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCC-cCCCCCcccceeeeeeEeeCCEEEEE
Q 040781 185 ICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPF-HLRQFDHEKKVFYSVITFANDRLIAV 261 (316)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~-~l~~~~~~~~~~~~~l~~~~g~L~v~ 261 (316)
.. +.. ...... ++++. ++.+.+.++..+.|..||+.+++-.... .+... ..... +....-+++.++.
T Consensus 109 ~~--~~~-~~~~i~----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~~ 178 (366)
T 3k26_A 109 KH--YVG-HGNAIN----ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH--RDEVL-SADYDLLGEKIMS 178 (366)
T ss_dssp EE--EES-CCSCEE----EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC--SSCEE-EEEECTTSSEEEE
T ss_pred ee--ecC-CCCcEE----EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc--cCcee-EEEECCCCCEEEE
Confidence 11 100 011111 34444 4566777777788999999876522111 01111 01111 1111234555566
Q ss_pred ecCCCCCCcceeeEEEee
Q 040781 262 GLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 262 g~~~~~~~~~~~~iw~l~ 279 (316)
++... .+.+|.++
T Consensus 179 ~~~dg-----~i~i~d~~ 191 (366)
T 3k26_A 179 CGMDH-----SLKLWRIN 191 (366)
T ss_dssp EETTS-----CEEEEESC
T ss_pred ecCCC-----CEEEEECC
Confidence 64433 39999987
No 157
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=80.73 E-value=22 Score=30.64 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=67.7
Q ss_pred EEEEEcCCceeeeecCCCCce--eecCCCCC--CCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eee
Q 040781 115 LLYTLSPSKLSFSFDPLHLAW--HHVDAPRV--WRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEI 185 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w--~~lp~~~~--~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~ 185 (316)
.|...+..+.+.+||..++.- ..+.+... ..... .++.. +..+++.++ ....+.+||..+.. .+.
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~------~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA------DDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE------TTSEEEEEETTCSCSSSC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe------CCCeEEEEECCCCCCCcc
Confidence 443333457899999877321 11111111 11111 22222 344555554 23568999998753 111
Q ss_pred cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
+..+. .+.. ...+++++ +..+++.++..+.|..||+.+.. ..+..+... ..........-.+..+++.++
T Consensus 270 ~~~~~---~~~~--~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 270 SHTVD---AHTA--EVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESH--KDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp SEEEE---CCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECC--SSCEEEEEECSSCTTEEEEEE
T ss_pred eeEee---cCCC--CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecC--CCCEEEEEECCCCCCEEEEEe
Confidence 11110 1110 11134444 34478888888899999998643 122212211 011111111112335666665
Q ss_pred CCCCCCcceeeEEEee
Q 040781 264 TGEAEDVKSLKIWQVN 279 (316)
Q Consensus 264 ~~~~~~~~~~~iw~l~ 279 (316)
... .+.||.+.
T Consensus 342 ~d~-----~i~iwd~~ 352 (430)
T 2xyi_A 342 TDR-----RLHVWDLS 352 (430)
T ss_dssp TTS-----CCEEEEGG
T ss_pred CCC-----cEEEEeCC
Confidence 433 38899887
No 158
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=80.41 E-value=19 Score=30.25 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=52.9
Q ss_pred CEEEEEcCCceeeeecCCCCc-------eeecCCCCCCCCCCEEEEE-C----C---EEEEEcCcCCCCCCCcEEEEEeC
Q 040781 114 TLLYTLSPSKLSFSFDPLHLA-------WHHVDAPRVWRTDPVVALV-G----D---KVVVAGGACDFEDDPLAVEMYSV 178 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~-------w~~lp~~~~~~~~~~~~~~-~----~---~v~~~gg~~~~~~~~~~v~vy~~ 178 (316)
..|+..+..+.+.+||..+++ ...+...... -..+... + + +.++.++.+ ..+.+||.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~g~~~~~l~s~~~d------g~i~iw~~ 98 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQAIERDAFELCLVATTSFS------GDLLFYRI 98 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEEEEETTTEEEEEEEEEETT------SCEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEecccccCCccccEEEEEcCC------CCEEEEEc
Confidence 444333445789999988876 2222111111 0122222 2 4 666666532 34888888
Q ss_pred CCCC------eeecCCCCcccccCccccceeEEEe-----CCEE-EEEecccceEEEeeCCC
Q 040781 179 DTRT------WEICQSMPAVLKDSAASTWLSVAVN-----SRQL-YVTEKYSGITVSFDPST 228 (316)
Q Consensus 179 ~t~~------W~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~-y~~~~~~~~i~~yD~~~ 228 (316)
.++. +..+...+...... ....+++. ++.+ .+.++..+.|..||+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 99 TREDETKKVIFEKLDLLDSDMKKH---SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EECTTTCCEEEEEECCSCTTGGGS---CEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cCCcccccccceeecccccccCCC---cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 7766 55554331100000 11134444 3445 66666777899999987
No 159
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.10 E-value=11 Score=37.69 Aligned_cols=95 Identities=5% Similarity=0.041 Sum_probs=51.9
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS 199 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~ 199 (316)
..+.+.+||..+++............. .++. -+++.++.++. ...+.+||..++.......... ...
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~-~l~~s~dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~----~v~- 1048 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAVR-HIQFTADGKTLISSSE------DSVIQVWNWQTGDYVFLQAHQE----TVK- 1048 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCCC-CEEECSSSSCEEEECS------SSBEEEEETTTTEEECCBCCSS----CEE-
T ss_pred CCCCEEEEEcCCCceeeecccCCCceE-EEEECCCCCEEEEEcC------CCEEEEEECCCCceEEEecCCC----cEE-
Confidence 457889999887664332111111111 2222 23445555542 2458899998887654322111 111
Q ss_pred cceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 200 TWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 200 ~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.+..+..++.++..+.|..||+.+++
T Consensus 1049 ---~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1049 ---DFRLLQDSRLLSWSFDGTVKVWNVITGR 1076 (1249)
T ss_dssp ---EEEECSSSEEEEEESSSEEEEEETTTTC
T ss_pred ---EEEEcCCCcEEEEECCCcEEEEECCCCc
Confidence 3444444445666677789999998765
No 160
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=79.97 E-value=19 Score=30.19 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=53.4
Q ss_pred CCEEEEEcC-CceeeeecCCCCceee-cCCC--CC--CCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 113 STLLYTLSP-SKLSFSFDPLHLAWHH-VDAP--RV--WRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 113 ~~~l~~~gg-~~~~~v~np~t~~w~~-lp~~--~~--~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
.+ +++.++ .+.+.+||..+++... +... .. ...-..++.. +.++++.++.++ ....+.+||..+++=..
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETEFGERIG 272 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETTTCCEEE
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECCCCcccc
Confidence 35 555553 4789999998765432 2110 10 0011122222 345555554220 11458899987764221
Q ss_pred c-CCCC--cc-----cccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 186 C-QSMP--AV-----LKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~-~~~p--~~-----~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ...+ .. ..+.. ...++++. ++.+.+.++..+.|..||+.+.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred eeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 1 1100 00 00111 11134444 45566666677889999997764
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=79.02 E-value=22 Score=29.55 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=50.9
Q ss_pred ceeeee--cCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEe--CCCCCeeecCCCCcccccC
Q 040781 123 KLSFSF--DPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYS--VDTRTWEICQSMPAVLKDS 196 (316)
Q Consensus 123 ~~~~v~--np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~--~~t~~W~~~~~~p~~~~~~ 196 (316)
+.+++| |+.+++...+.... ...-..++.. +..+|+...... ....+.+|+ ..+++.+.+...+.. ...
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~---~~~~v~~~~~~~~~g~~~~~~~~~~~-~~~ 101 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSK---DQAAVSAFAFDKEKGTLHLLNTQKTM-GAD 101 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSS---TTCEEEEEEEETTTTEEEEEEEEECS-SSC
T ss_pred CCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCC---CCCcEEEEEEeCCCCcEEEeeEeccC-CCC
Confidence 455555 78888877664321 1111122222 345666653211 123465554 445666665433220 111
Q ss_pred ccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781 197 AASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 197 ~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.. .+++.+..+|+.+...+.|..||+.++
T Consensus 102 p~----~~~~dg~~l~~~~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 102 PC----YLTTNGKNIVTANYSGGSITVFPIGQD 130 (361)
T ss_dssp EE----EEEECSSEEEEEETTTTEEEEEEBCTT
T ss_pred cE----EEEECCCEEEEEECCCCEEEEEEeCCC
Confidence 11 344566778888766678899998753
No 162
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=78.91 E-value=43 Score=31.45 Aligned_cols=129 Identities=12% Similarity=-0.019 Sum_probs=68.3
Q ss_pred CEEEEE-cCCceeeeecCCCCceeecCCCCCCCCCCEEEE-E--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC--
Q 040781 114 TLLYTL-SPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-V--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-- 187 (316)
Q Consensus 114 ~~l~~~-gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-- 187 (316)
|.|++. |..+.++++||.++++..+............+. . ++.+++... ..+..||+.+++++...
T Consensus 483 g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~~~~~~~ 554 (758)
T 3ott_A 483 GNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH--------GGVMRINPKDESQQSISFG 554 (758)
T ss_dssp SCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET--------TEEEEECC--CCCCBCCCC
T ss_pred CCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec--------CceEEEecCCCceEEeccc
Confidence 556653 333679999999998887642111111111111 1 345665321 24788999888877652
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLT 264 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~ 264 (316)
.+|. . . ..++...+|.+|+.... .|..||+.+.++.... ++.. ..........+|.|++.+..
T Consensus 555 gl~~--~-~----i~~i~~~~g~lWi~t~~--Gl~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~G~l~fG~~~ 617 (758)
T 3ott_A 555 SFSN--N-E----ILSMTCVKNSIWVSTTN--GLWIIDRKTMDARQQN-MTNK----RFTSLLFDPKEDCVYLGGAD 617 (758)
T ss_dssp C-----C-C----EEEEEEETTEEEEEESS--CEEEEETTTCCEEEC---CCC----CCSEEEEETTTTEEEEECBS
T ss_pred CCCc--c-c----eEEEEECCCCEEEECCC--CeEEEcCCCceeEEec-CCCC----ceeeeEEECCCCcEEEecCC
Confidence 2322 1 1 12455568889887643 5799999998866543 3322 11112222346777776543
No 163
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=78.82 E-value=23 Score=28.13 Aligned_cols=105 Identities=9% Similarity=-0.021 Sum_probs=60.6
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.++.||+.. +.+.+.++|+.++.-..+-+... ..-..+++. +..+|+... ....+.+++.....-+.+..
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~------~~~~I~~~~~~g~~~~~~~~ 118 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDS------QLDRIEVAKMDGTQRRVLFD 118 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEC
T ss_pred CCCEEEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEEC------CCCEEEEEEcCCCCEEEEEE
Confidence 357888876 45789999998765433321110 111234443 468888753 23568888886543232211
Q ss_pred CCcccccCccccceeEEEe--CCEEEEEecc--cceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKY--SGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~--~~~i~~yD~~~~~ 230 (316)
.. ..... ++++. ++.+|+.... .+.|..+++....
T Consensus 119 ~~---~~~P~----~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 119 TG---LVNPR----GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp SS---CSSEE----EEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CC---CCCcc----EEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 10 01112 56666 6899998854 4688899887543
No 164
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=78.49 E-value=24 Score=28.85 Aligned_cols=99 Identities=6% Similarity=0.002 Sum_probs=48.3
Q ss_pred CEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+..++.| ..+.+.+||..+++... +.. .... .+... +...++.|+.+ ..+.++|.....-..+..
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~D------~~i~vwd~~~~~~~~~~~ 146 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKASMIISGSRD------KTIKVWTIKGQCLATLLG 146 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTTSCEEEEEETT------SCEEEEETTSCEEEEECC
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEcc----CCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEec
Confidence 4434444 45789999998876432 211 1111 12221 24455555432 347788876433222211
Q ss_pred CCcccccCccccceeEEEe-------CCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN-------SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~-------~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
-.. ... .+.+. ++.+.+.++..+.|..||+.+..
T Consensus 147 h~~----~v~----~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 147 HND----WVS----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp CSS----CEE----EEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred cCC----cEE----EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence 000 000 12221 23455666677788999987654
No 165
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=78.36 E-value=11 Score=31.07 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=18.5
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++... +.+.+.++..+.|..||+.+..
T Consensus 236 ~~~~~-~~~l~~~~~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 236 CVRWL-GDLILSKSCENAIVCWKPGKME 262 (366)
T ss_dssp EEEEE-TTEEEEECSSSEEEEEEESSTT
T ss_pred EEEEc-CCEEEEEecCCEEEEEeCCCcc
Confidence 45555 4455666667889999987654
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=78.29 E-value=12 Score=33.94 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=57.3
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVL 193 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~ 193 (316)
+.+|+.+..+...+||..+++.+.+...+. .......-+..++... .... ....+.++|..+++.+.+..-+.
T Consensus 123 ~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~-~~~~--~~~~i~~~d~~~g~~~~l~~~~~-- 195 (582)
T 3o4h_A 123 AVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLG-FFGG--GRVSLFTSNLSSGGLRVFDSGEG-- 195 (582)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEE-EEET--TEEEEEEEETTTCCCEEECCSSC--
T ss_pred eEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEE-EcCC--CCeEEEEEcCCCCCceEeecCCC--
Confidence 456666555667799999988777643222 2222222344444332 1111 12458889999998887643221
Q ss_pred ccCccccceeEEE--eCCEEEEEecccc--eEEEeeCCCCCcc
Q 040781 194 KDSAASTWLSVAV--NSRQLYVTEKYSG--ITVSFDPSTKGWS 232 (316)
Q Consensus 194 ~~~~~~~~~~~~~--~~~~~y~~~~~~~--~i~~yD~~~~~W~ 232 (316)
.. . +++. +|..++ .+...+ .|+.+|+++++..
T Consensus 196 ~~--~----~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 196 SF--S----SASISPGMKVTA-GLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EE--E----EEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE
T ss_pred cc--c----cceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE
Confidence 11 1 2222 234455 443344 7899999887754
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=78.03 E-value=37 Score=31.06 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=53.4
Q ss_pred ceeeeecCCC------CceeecC-CCCCCCCCCEEEEECCEEEEEcCcCC-CCCCCcEEEEEeCC-CCCeeecCCCCccc
Q 040781 123 KLSFSFDPLH------LAWHHVD-APRVWRTDPVVALVGDKVVVAGGACD-FEDDPLAVEMYSVD-TRTWEICQSMPAVL 193 (316)
Q Consensus 123 ~~~~v~np~t------~~w~~lp-~~~~~~~~~~~~~~~~~v~~~gg~~~-~~~~~~~v~vy~~~-t~~W~~~~~~p~~~ 193 (316)
.+++++|..+ ++.+.+. .-...........-+.+|+....... ..-....+.++|.. ++++.....+....
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 5799999988 6766664 22211111122111334444332111 11123578899988 56433322221100
Q ss_pred ccCccccceeEEEe-CCEEEEEecccc--eEEEeeCCCCCccCCC
Q 040781 194 KDSAASTWLSVAVN-SRQLYVTEKYSG--ITVSFDPSTKGWSGPF 235 (316)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~~y~~~~~~~--~i~~yD~~~~~W~~~~ 235 (316)
..... .+... +|.+|+.+...+ .|+.+|+.++++..+.
T Consensus 241 ~~~~~----~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 241 EEAIA----QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC 281 (662)
T ss_dssp TBCEE----EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred CceEc----ceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence 01111 23333 455777665444 7899999887766544
No 168
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=77.76 E-value=24 Score=27.78 Aligned_cols=139 Identities=9% Similarity=-0.033 Sum_probs=65.2
Q ss_pred CceEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCC-CceeecCCCCCCCCCCEEEEE-CCEEE
Q 040781 81 TTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLH-LAWHHVDAPRVWRTDPVVALV-GDKVV 158 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t-~~w~~lp~~~~~~~~~~~~~~-~~~v~ 158 (316)
..+..+|...++...+. ...........+..+..+++++.+.+++||..+ ++...+...........+... +++.+
T Consensus 22 ~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp EEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred eeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 34666787776655442 111111223333334334444457899999999 877666432211111112222 33333
Q ss_pred EEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccc--eEEEeeCCCCCcc
Q 040781 159 VAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSG--ITVSFDPSTKGWS 232 (316)
Q Consensus 159 ~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~--~i~~yD~~~~~W~ 232 (316)
++++.... ....+..++..++.-+.+..... .. .++.. +..+++.+...+ .|+.+|..+....
T Consensus 100 ~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~-----~~----~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 100 AISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP-----SY----WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp EEEECTTT--SSCEEEEEETTCCCCEECCSSSS-----EE----EEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEEEeCCC--CcceEEEEECCCCceEEeecCCC-----cc----ceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 33321111 23567778877766444432211 11 22232 444555554334 4555667665543
No 169
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=77.67 E-value=25 Score=30.05 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=45.1
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEE--eCCEEEEEec-ccceEEEeeCCCCCccCCCcCCCCCccccee
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAV--NSRQLYVTEK-YSGITVSFDPSTKGWSGPFHLRQFDHEKKVF 247 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~--~~~~~y~~~~-~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~ 247 (316)
..+.+||..+++-........ .. . +++. .++.+....| ..+.|..||..+.+ .+..+... .....
T Consensus 301 ~~I~iwd~~t~~~~~~~~~~~--~v--~----~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH--~~~V~ 368 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDAHS--QV--C----SILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGH--TSRVL 368 (420)
T ss_dssp CEEEEEETTTTEEEEEEECSS--CE--E----EEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCC--SSCEE
T ss_pred CEEEEEeCCccccceeecccc--ce--e----eeeecCCCCeEEEEEecCCCEEEEEECCCCc--EEEEEcCC--CCCEE
Confidence 458899988775333211111 00 0 1222 2445555544 45789999987654 23323322 11111
Q ss_pred eeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 248 YSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 248 ~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
. ....-+|+.++.++.+. .+.||.+.
T Consensus 369 ~-l~~spdg~~l~S~s~D~-----tvriWdv~ 394 (420)
T 4gga_A 369 S-LTMSPDGATVASAAADE-----TLRLWRCF 394 (420)
T ss_dssp E-EEECTTSSCEEEEETTT-----EEEEECCS
T ss_pred E-EEEcCCCCEEEEEecCC-----eEEEEECC
Confidence 1 11223566666554333 39999886
No 170
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=77.03 E-value=25 Score=28.22 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
++.+|.++ ..+.+++||+.++ ...+..... .-.+++.. ++++++... ....+.+||..+++.+.+....
T Consensus 39 g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~--~~~~l~~~~dg~l~v~~~------~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 39 RSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSH--HQNGHCLNKQGHLIACSH------GLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp GTEEEEEEGGGTEEEEEETTSC-EEEEESSCS--SEEEEEECTTCCEEEEET------TTTEEEEECSTTCCEEEEECEE
T ss_pred CCEEEEEeCCCCEEEEEECCCC-eEEEECCCC--CcceeeECCCCcEEEEec------CCCeEEEEcCCCCcEEEEeecc
Confidence 45455555 4478999999988 555432111 11123332 456666542 1246889999888876653211
Q ss_pred cccc-cCccccceeEEEe-CCEEEEEec-----------------ccceEEEeeCCCCC
Q 040781 191 AVLK-DSAASTWLSVAVN-SRQLYVTEK-----------------YSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~-~~~~y~~~~-----------------~~~~i~~yD~~~~~ 230 (316)
.... .... .+++. +|.+|+... ..+.|+.||+. ++
T Consensus 110 ~~~~~~~~~----~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 110 EGKKLNSPN----DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp TTEECCCCC----CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred CCCCCCCCC----CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 1001 0111 33343 578888631 13478899987 44
No 171
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=76.91 E-value=1.6 Score=37.39 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=32.1
Q ss_pred cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC--Ceee
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR--TWEI 185 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~ 185 (316)
.++.+|+.+..+.++++|+.|++ |+.-. ......+ ...++++++.+..+ ..+..+|.+++ .|+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p--~~~~g~~~v~~s~d------g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVP--THVEEPAFLPDPND------GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTT------CCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecc--eEcCCCEEEEeCCC------CEEEEEECCCCceeeee
Confidence 56888877766789999999886 54321 1111112 22455566665322 33777787554 4653
No 172
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=76.71 E-value=27 Score=27.97 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=44.6
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEec-ccceEEEeeCCCCCccCCCcCCCCCcccceeee
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYS 249 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~ 249 (316)
..+.++|..+..-........ ..... .....++.+....+ ..+.|..||..+.+ .+..+... ..... +
T Consensus 221 ~~i~lwd~~~~~~~~~~~~~~--~v~~~----~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH--~~~V~-~ 289 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDAHS--QVCSI----LWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGH--TSRVL-S 289 (318)
T ss_dssp CEEEEEETTTCCEEEEEECSS--CEEEE----EEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCC--SSCEE-E
T ss_pred CEEEEEeccccccccccccee--eeeee----eecccccceEEEEEcCCCEEEEEECCCCc--EEEEEcCC--CCCEE-E
Confidence 457788877665433211111 00000 11222455555544 56789999997654 22223321 01111 1
Q ss_pred eeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 250 VITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 250 ~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
....-+|++++.++.+. .+.||.+.
T Consensus 290 l~~spdg~~l~S~s~D~-----~v~iWd~~ 314 (318)
T 4ggc_A 290 LTMSPDGATVASAAADE-----TLRLWRCF 314 (318)
T ss_dssp EEECTTSSCEEEEETTT-----EEEEECCS
T ss_pred EEEcCCCCEEEEEecCC-----eEEEEECC
Confidence 11223566666665333 39999886
No 173
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=76.52 E-value=21 Score=28.61 Aligned_cols=101 Identities=6% Similarity=-0.026 Sum_probs=47.0
Q ss_pred cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~ 189 (316)
.+..++..+..+.+.+||..+++....-..... .-..++.. +.+.++.|+.+ ..+.+++..... .+.+..+
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCYDSEKELLLFGGKD------TMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSSEEEEEEEECSS-CEEEEEEETTTTEEEEEETT------SCEEEEETTCCTTSCC-CEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-cEEEEEECCCCCEEEEecCC------CeEEEEEeeecCCCCcccch
Confidence 445555444557899999877654332111111 11122222 34455555432 336677665432 1111111
Q ss_pred CcccccCccccceeEEEeCCEEEEEecccceEEEee
Q 040781 190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFD 225 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD 225 (316)
.. +.. ....+...++ +.+.++..+.|..||
T Consensus 101 ~~---~~~--~i~~~~~~~~-~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 101 IG---HQG--NVCSLSFQDG-VVISGSWDKTAKVWK 130 (313)
T ss_dssp CC---CSS--CEEEEEEETT-EEEEEETTSEEEEEE
T ss_pred hh---ccc--CEEEEEecCC-EEEEEeCCCCEEEEc
Confidence 11 111 1124555544 445555667889999
No 174
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=76.43 E-value=28 Score=29.11 Aligned_cols=131 Identities=11% Similarity=-0.018 Sum_probs=64.1
Q ss_pred eEEeeCCCCceeEccCCCCCCcc-c--eeeeec-CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCC-CCEEEEE-CC
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFD-F--LLRSSH-STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRT-DPVVALV-GD 155 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~-~--~~~~s~-~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~-~~~~~~~-~~ 155 (316)
+..+|....+..... ....+. . ....+. ++.+++.+ ..+.+.+||..++....+........ -..++.. +.
T Consensus 98 i~iwd~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 98 IILWDYDVQNKTSFI--QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp EEEEETTSTTCEEEE--CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT
T ss_pred EEEEeCCCcccceee--ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC
Confidence 556777765554331 221121 1 122233 33334444 45789999998766655532221111 1122222 34
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCE-EEEEecccceEEEeeCCCC
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQ-LYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~-~y~~~~~~~~i~~yD~~~~ 229 (316)
+.++.|+. ...+.+||.....-..+... ... ..++++. ++. +.+.++..+.|..||+.+.
T Consensus 176 ~~l~~~~~------d~~i~i~d~~~~~~~~~~~h----~~~----v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 176 QMLATGDS------TGRLLLLGLDGHEIFKEKLH----KAK----VTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp TEEEEEET------TSEEEEEETTSCEEEEEECS----SSC----EEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred CEEEEECC------CCCEEEEECCCCEEEEeccC----CCc----EEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence 45555542 25688898853322222111 111 1134444 233 6667777788999999874
No 175
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=76.35 E-value=26 Score=27.53 Aligned_cols=93 Identities=8% Similarity=-0.114 Sum_probs=48.2
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCC-CCeeecCCCCcccccCcccc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDT-RTWEICQSMPAVLKDSAAST 200 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t-~~W~~~~~~p~~~~~~~~~~ 200 (316)
+.+++||+.+++...+..... ....++.. +++.+++++ ...+.++|..+ ++...+..... .....
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~~~~~~~~~--~~~~~-- 88 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSPEKVDTGFA--TICNN-- 88 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEE-------TTEEEEEESSSCCSCEECCCTTC--CCBCS--
T ss_pred eeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCceEeccccc--ccccc--
Confidence 689999999888766532211 11122222 334444442 13688999988 77665532211 11111
Q ss_pred ceeEEE--eCCEEEEEec---ccceEEEeeCCCCC
Q 040781 201 WLSVAV--NSRQLYVTEK---YSGITVSFDPSTKG 230 (316)
Q Consensus 201 ~~~~~~--~~~~~y~~~~---~~~~i~~yD~~~~~ 230 (316)
.++. .+..+++... ....|+.+|..+..
T Consensus 89 --~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 89 --DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp --CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred --ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence 1222 2344444441 23467888887766
No 176
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=76.21 E-value=30 Score=28.15 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred eEEeeC-CCCceeEccCCC--CCCccceeeeecCCEEEEEcCCceeeeecCCC---------CceeecCCCCCCCCCCEE
Q 040781 83 AHAYDA-RSHVWIEIKNNQ--PSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLH---------LAWHHVDAPRVWRTDPVV 150 (316)
Q Consensus 83 ~~~~d~-~~~~w~~~~~~~--~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t---------~~w~~lp~~~~~~~~~~~ 150 (316)
+..+|. ..++...+. . ..........+.+..++..+..+.+.+||..+ ++... .......-..+
T Consensus 81 i~~wd~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 156 (342)
T 1yfq_A 81 ILKVDLIGSPSFQALT--NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--NTKVKNKIFTM 156 (342)
T ss_dssp EEEECSSSSSSEEECB--SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--SSSSCCCEEEE
T ss_pred EEEEEeccCCceEecc--ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeee--EEeeCCceEEE
Confidence 556777 665554442 2 11111222222255655555567899998775 33211 11111111133
Q ss_pred EEECCEEEEEcCcCCCCCCCcEEEEEeCCC-CC--eeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEee
Q 040781 151 ALVGDKVVVAGGACDFEDDPLAVEMYSVDT-RT--WEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFD 225 (316)
Q Consensus 151 ~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t-~~--W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD 225 (316)
...... +++++ ....+.+||..+ .. ...... +. ..... ++++. ++.+++.++..+.|..||
T Consensus 157 ~~~~~~-l~~~~------~d~~i~i~d~~~~~~~~~~~~~~-~~--~~~i~----~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 157 DTNSSR-LIVGM------NNSQVQWFRLPLCEDDNGTIEES-GL--KYQIR----DVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp EECSSE-EEEEE------STTEEEEEESSCCTTCCCEEEEC-SC--SSCEE----EEEECSGGGCEEEEEETTSEEEEEE
T ss_pred EecCCc-EEEEe------CCCeEEEEECCccccccceeeec-CC--CCcee----EEEECCCCCCEEEEEecCCcEEEEE
Confidence 344455 44443 224588999887 43 222211 11 11111 44444 466777777777888888
Q ss_pred CCCC
Q 040781 226 PSTK 229 (316)
Q Consensus 226 ~~~~ 229 (316)
....
T Consensus 223 ~~~~ 226 (342)
T 1yfq_A 223 FDDQ 226 (342)
T ss_dssp CCTT
T ss_pred EcCC
Confidence 7655
No 177
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.93 E-value=38 Score=29.19 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=61.6
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecC---CCCCCCCC-C-EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVD---APRVWRTD-P-VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp---~~~~~~~~-~-~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
++.||+....+.++.+|+.++....+. ........ . .+++. +..+|+... ....+..|+.... -..
T Consensus 230 ~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~------~~~~I~~~~~~g~-~~~ 302 (409)
T 3hrp_A 230 EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ------NLSSVYKITPDGE-CEW 302 (409)
T ss_dssp SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET------TTTEEEEECTTCC-EEE
T ss_pred CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC------CCCEEEEEecCCC-EEE
Confidence 588888666578999999888755441 11111112 1 55554 478888753 2245777776543 222
Q ss_pred c-CCC-Cccccc-----CccccceeEEEe-CCEEEEEec-ccceEEEeeCCCCCc
Q 040781 186 C-QSM-PAVLKD-----SAASTWLSVAVN-SRQLYVTEK-YSGITVSFDPSTKGW 231 (316)
Q Consensus 186 ~-~~~-p~~~~~-----~~~~~~~~~~~~-~~~~y~~~~-~~~~i~~yD~~~~~W 231 (316)
+ ... ...... .....-.++++. +|.+|+... ..+.|..||+.++..
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 1 110 000000 000001156665 567999988 778999999665553
No 178
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=75.84 E-value=31 Score=28.12 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=56.4
Q ss_pred ecCCEEEEEc-CCceeeeecCCCCc---eeecC------CCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781 111 SHSTLLYTLS-PSKLSFSFDPLHLA---WHHVD------APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT 180 (316)
Q Consensus 111 s~~~~l~~~g-g~~~~~v~np~t~~---w~~lp------~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t 180 (316)
..++.+|+.. +.+.++++|+.++. +..-+ +........++..-+..+|+.-. ....+.+|+...
T Consensus 125 ~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 125 LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDS 198 (306)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCT
T ss_pred cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCC
Confidence 3456677765 45789999997642 21111 00000111123334557777653 235688888764
Q ss_pred -CCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCC
Q 040781 181 -RTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 181 -~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~ 228 (316)
++......... ..... ++++. +|.+|+.....+.|..||+..
T Consensus 199 ~g~~~~~~~~~~--~~~P~----gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 199 TDKPGEPEIFVE--QTNID----DFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp TSCBCCCEEEEE--SCCCS----SEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CCCCCccEEEec--cCCCC----CeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 32211110000 01112 55565 578899887667899999873
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=75.79 E-value=55 Score=30.97 Aligned_cols=109 Identities=13% Similarity=0.173 Sum_probs=60.5
Q ss_pred cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCC-CCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRT-DPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~-~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
..|.|++... +.+++||+.++++..+........ -..+.. .++.+++... ...+..|+..+++++.....
T Consensus 140 ~~g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-------~~Gl~~~~~~~~~~~~~~~~ 211 (795)
T 4a2l_A 140 SPEQLLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTS-------TDGLYTYSITQKTFEKVIPI 211 (795)
T ss_dssp ETTEEEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEES-------SSCEEEEETTTCCEEECC--
T ss_pred CCCCEEEEEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEEC-------CCCEEEEeCCCCeEEEecCC
Confidence 3466666544 579999999988876643110001 112222 3667777321 12377899999888766322
Q ss_pred CcccccCccccceeEEE-eCCEEEEEecccceEEEeeCCCCCccCCC
Q 040781 190 PAVLKDSAASTWLSVAV-NSRQLYVTEKYSGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 190 p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~i~~yD~~~~~W~~~~ 235 (316)
+. ..... ++.. .++.+|+... .+.+..||+.++++..+.
T Consensus 212 ~~--~~~i~----~i~~d~~g~lwigt~-~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 212 LG--TKQIQ----AILQQSPTRIWVATE-GAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp ----CCCEE----EEEEEETTEEEEEEB-SSCEEEEETTTTEEEEEC
T ss_pred CC--CCeeE----EEEEcCCCCEEEEEC-CCCeEEEeCCCCeEEEee
Confidence 11 11111 3333 3677887652 234789999988765543
No 180
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=75.61 E-value=25 Score=30.31 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=19.9
Q ss_pred eEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 203 SVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.++.. ++.+++.++..+.|..||+.+..
T Consensus 236 ~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred eeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 34443 46677777777899999998763
No 181
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=75.20 E-value=59 Score=31.04 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=57.7
Q ss_pred CCEEEEEc-CCceeeeecCCCC----ceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 113 STLLYTLS-PSKLSFSFDPLHL----AWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~----~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
.+.||+.. +.+.++.+++... ....+... ....-.++++ .+.+||+.-. ....|++++.....-+.
T Consensus 435 ~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~ 507 (791)
T 3m0c_C 435 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKT 507 (791)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEE
T ss_pred CCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEE
Confidence 57888776 3467777776542 22222110 1111224544 3568888753 23568899887655444
Q ss_pred cC--CCCcccccCccccceeEEEe--CCEEEEEec-ccceEEEeeCCCCC
Q 040781 186 CQ--SMPAVLKDSAASTWLSVAVN--SRQLYVTEK-YSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~~--~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~-~~~~i~~yD~~~~~ 230 (316)
+. .+.. .. +++++ ++.||+... ..+.|.++++....
T Consensus 508 l~~~~l~~-----P~----gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 508 LFRENGSK-----PR----AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp EEECTTCC-----EE----EEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEeCCCCC-----cc----eEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 42 2211 12 67775 689999874 33689999987654
No 182
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=75.07 E-value=36 Score=28.55 Aligned_cols=155 Identities=10% Similarity=0.007 Sum_probs=73.4
Q ss_pred ecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCC-CCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 111 SHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRT-DPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 111 s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~-~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
+..|.+++.+..+.+.+++..++............. -..++. -+++.++.++.++. ....+..++...........
T Consensus 185 spdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~--~~~~i~~~~~~~~~~~~~~~ 262 (365)
T 4h5i_A 185 STDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG--KGIVLTKISIKSGNTSVLRS 262 (365)
T ss_dssp CTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS--CCEEEEEEEEETTEEEEEEE
T ss_pred ccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc--ceeEEeecccccceecceee
Confidence 344555555555678888888776543211111100 011222 24566666543322 22345566665554433211
Q ss_pred CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEA 267 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~ 267 (316)
... ..+... ..++++. +|.+.+.++..+.|..||..+.+- +..+... +..... +....-+|++++.+..+.
T Consensus 263 ~~~-~~~~~~--V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~--~~~~~~g-H~~~V~-~v~fSpdg~~laS~S~D~- 334 (365)
T 4h5i_A 263 KQV-TNRFKG--ITSMDVDMKGELAVLASNDNSIALVKLKDLSM--SKIFKQA-HSFAIT-EVTISPDSTYVASVSAAN- 334 (365)
T ss_dssp EEE-ESSCSC--EEEEEECTTSCEEEEEETTSCEEEEETTTTEE--EEEETTS-SSSCEE-EEEECTTSCEEEEEETTS-
T ss_pred eee-cCCCCC--eEeEEECCCCCceEEEcCCCEEEEEECCCCcE--EEEecCc-ccCCEE-EEEECCCCCEEEEEeCCC-
Confidence 000 011100 1133443 567777777888899999987651 1111111 001111 112233677766664433
Q ss_pred CCcceeeEEEee
Q 040781 268 EDVKSLKIWQVN 279 (316)
Q Consensus 268 ~~~~~~~iw~l~ 279 (316)
.+.||.+.
T Consensus 335 ----tvrvw~ip 342 (365)
T 4h5i_A 335 ----TIHIIKLP 342 (365)
T ss_dssp ----EEEEEECC
T ss_pred ----eEEEEEcC
Confidence 49999985
No 183
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=75.00 E-value=40 Score=29.04 Aligned_cols=139 Identities=9% Similarity=0.040 Sum_probs=67.7
Q ss_pred CEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
..++..+..+.+.+||..+++... +...... -..+. ...+.++.|+. ...+.+||..+..-......
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~-~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~--- 390 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENGELMYTLQGHTAL--VGLLR-LSDKFLVSAAA------DGSIRGWDANDYSRKFSYHH--- 390 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEE-ECSSEEEEEET------TSEEEEEETTTCCEEEEEEC---
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc--EEEEE-EcCCEEEEEeC------CCcEEEEECCCCceeeeecC---
Confidence 444433345789999998876432 2111110 01222 33444555542 24588999887652221111
Q ss_pred cccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcce
Q 040781 193 LKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKS 272 (316)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~ 272 (316)
..... ......++.+.+.++ .+.|..||+.+++-......... .. -..+...++.+++.+..+..
T Consensus 391 -~~~~~---~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~---~~--v~~v~~~~~~l~~~~~~~g~----- 455 (464)
T 3v7d_B 391 -TNLSA---ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA---DQ--IWSVNFKGKTLVAAVEKDGQ----- 455 (464)
T ss_dssp -TTCCC---EEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTC---SE--EEEEEEETTEEEEEEEETTE-----
T ss_pred -CCCcc---EEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCC---Cc--EEEEEecCCEEEEEEEeCCe-----
Confidence 11111 012223455555555 67899999998773321111111 11 12333446677766654332
Q ss_pred eeEEEee
Q 040781 273 LKIWQVN 279 (316)
Q Consensus 273 ~~iw~l~ 279 (316)
+.+|.+|
T Consensus 456 ~~i~~ld 462 (464)
T 3v7d_B 456 SFLEILD 462 (464)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 5556655
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=74.77 E-value=9.1 Score=34.98 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=59.3
Q ss_pred CCEEEEEc-CCceeeeecCCCCcee-ecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWH-HVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
++.+|+.. +.+.+.++|+.|++-. .++- ...-+.+.+. +..+|+.+. ...+.+||..+.+-+.+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCCEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCcEeEE
Confidence 46777765 5689999999998654 3431 1111233332 346776542 2469999985222233333
Q ss_pred CCcccccCccccceeEEEe------CCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN------SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~------~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++. ..... ++++. |..+|+.....+.|.++|..+.+
T Consensus 236 i~~--G~~P~----~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 236 IKI--GSEAR----SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp EEC--CSEEE----EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred Eec--CCCCc----eeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 322 11112 45554 45788888777888999977654
No 185
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=74.73 E-value=32 Score=27.80 Aligned_cols=102 Identities=13% Similarity=-0.017 Sum_probs=52.4
Q ss_pred EcCCceeeeecCCCCceeecCCCCCCC-CCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc--c
Q 040781 119 LSPSKLSFSFDPLHLAWHHVDAPRVWR-TDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV--L 193 (316)
Q Consensus 119 ~gg~~~~~v~np~t~~w~~lp~~~~~~-~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~--~ 193 (316)
.+..+.+.++|+.+++....-..+... ....++.. +..+++.+. ....+.++|..+++-...-..+.. .
T Consensus 7 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC------CCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 335578999999887654321111100 01123332 336666653 224688999888764322111110 0
Q ss_pred ccCccccceeEEEe--CCEEEEEec-----------ccceEEEeeCCCCC
Q 040781 194 KDSAASTWLSVAVN--SRQLYVTEK-----------YSGITVSFDPSTKG 230 (316)
Q Consensus 194 ~~~~~~~~~~~~~~--~~~~y~~~~-----------~~~~i~~yD~~~~~ 230 (316)
..... ++++. +..+|+... ..+.|..||+.+.+
T Consensus 81 ~~~~~----~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 126 (337)
T 1pby_B 81 VKSLF----GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126 (337)
T ss_dssp EECTT----CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred ccccc----ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc
Confidence 00111 33443 457777741 23678999998765
No 186
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=74.23 E-value=42 Score=28.95 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=53.0
Q ss_pred CEEEEEcCCceeeeecCCCCceee--cCCCCCCCCCC--EEEE-EC---CEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHH--VDAPRVWRTDP--VVAL-VG---DKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~--lp~~~~~~~~~--~~~~-~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
..|+..+..+.+++|+..++.... +..+.. .... .++. -+ .+.++.|+.+ ..+.+||..+++-..
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVD 234 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEE
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceee
Confidence 444443344678888876655432 101111 1111 2222 24 5666666532 348888887664322
Q ss_pred cCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.- + . .+.. ...++++.++.+.+.++..+.|..||+.+.+
T Consensus 235 ~~-~-~--~h~~--~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 235 KW-L-F--GHKH--FVSSICCGKDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp EE-C-C--CCSS--CEEEEEECSTTEEEEEESSSEEEEEETTTCC
T ss_pred ee-e-c--CCCC--ceEEEEECCCCEEEEEeCCCeEEEEECCCCc
Confidence 10 1 0 1111 0113444356666666677889999998765
No 187
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=74.19 E-value=46 Score=29.99 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=53.9
Q ss_pred CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CC-EEEEEcCcCCCCCCCcEEEEEeCCCCCeeec---CCCCccccc
Q 040781 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GD-KVVVAGGACDFEDDPLAVEMYSVDTRTWEIC---QSMPAVLKD 195 (316)
Q Consensus 121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~-~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~---~~~p~~~~~ 195 (316)
+.+.+.++|..+.+...+...+....-+.++.. ++ .+++.+. ....+.++|..+++=... ...|.
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph---- 369 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPH---- 369 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBC----
T ss_pred CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCC----
Confidence 457888888776542211111111111222222 23 4555442 224588899998864332 11222
Q ss_pred CccccceeEE-Ee--CCEEEEEec-ccceEEEeeCCCCC-----ccCCCcCCC
Q 040781 196 SAASTWLSVA-VN--SRQLYVTEK-YSGITVSFDPSTKG-----WSGPFHLRQ 239 (316)
Q Consensus 196 ~~~~~~~~~~-~~--~~~~y~~~~-~~~~i~~yD~~~~~-----W~~~~~l~~ 239 (316)
... +.. +. ++.+|+.+. ..+.|.+||..++. |+.+..++.
T Consensus 370 ~g~----g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 370 PGR----GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp CTT----CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred CCC----CcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 111 222 22 477888765 34688999988732 776665554
No 188
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=73.99 E-value=41 Score=28.69 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=52.1
Q ss_pred CEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
+.+++.| ..+.+.+||..+++... +...+....-..++.. +.+.++.|+.+ ..+.+||..+++-...-..+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~ 255 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFNVLIRSWSFG 255 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTTEEEEEEBCT
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCccEEEEEecC
Confidence 3334444 44789999998876432 2111001111122222 34556666532 44889998876543211111
Q ss_pred cccccCccccceeEEEe-----CCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVN-----SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-----~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
. ..... +++.. ++.+.+.++..+.|..||+.+..
T Consensus 256 ~--~~~v~----~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 256 D--HAPIT----HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp T--CEEEE----EEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred C--CCceE----EEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 1 00001 22111 34466666667788999987654
No 189
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=73.86 E-value=42 Score=28.78 Aligned_cols=107 Identities=9% Similarity=-0.023 Sum_probs=54.3
Q ss_pred CCEEEEEc---CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CC-EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 113 STLLYTLS---PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GD-KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 113 ~~~l~~~g---g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~-~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
|..|++.+ +...+++||..+++...+...... ...+... ++ .++...... ....+.++|..+++-+.+.
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~spdg~~l~~~s~~~----g~~~i~~~d~~~~~~~~l~ 307 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN--NTEPTWFPDSQNLAFTSDQA----GRPQVYKVNINGGAPQRIT 307 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC--EEEEEECTTSSEEEEEECTT----SSCEEEEEETTSSCCEECC
T ss_pred CCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc--ccceEECCCCCEEEEEECCC----CCcEEEEEECCCCCEEEEe
Confidence 34455443 235699999999887766432211 1122222 23 344433211 2246788898877644432
Q ss_pred CCCcccccCccccceeEEE--eCCEEEEEecc--cceEEEeeCCCCCccC
Q 040781 188 SMPAVLKDSAASTWLSVAV--NSRQLYVTEKY--SGITVSFDPSTKGWSG 233 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~--~~~~~y~~~~~--~~~i~~yD~~~~~W~~ 233 (316)
.... ... .+++ .|..+++.+.. ...|..+|+.+++...
T Consensus 308 ~~~~----~~~----~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~ 349 (415)
T 2hqs_A 308 WEGS----QNQ----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 349 (415)
T ss_dssp CSSS----EEE----EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred cCCC----ccc----CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE
Confidence 2111 111 2222 24445554432 2478999999877543
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=73.54 E-value=24 Score=30.43 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=41.5
Q ss_pred CCEEEEEcC---cCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CC-EEEEEecccceEEEeeCC
Q 040781 154 GDKVVVAGG---ACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SR-QLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 154 ~~~v~~~gg---~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~-~~y~~~~~~~~i~~yD~~ 227 (316)
+.++|+.-+ ...++.....+.++|..|++=.. .++. ..... ++.+. +. .+|+..+..+.|.+||..
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--~i~v--g~~~~----~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEM--GHEID----SINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEE--EEEEC----EEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEE--EEEC--CCCcc----eEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 478888632 11122234679999999876433 2222 11111 34443 33 688877777899999999
Q ss_pred CCC
Q 040781 228 TKG 230 (316)
Q Consensus 228 ~~~ 230 (316)
+.+
T Consensus 363 t~k 365 (386)
T 3sjl_D 363 SGE 365 (386)
T ss_dssp TCC
T ss_pred CCc
Confidence 876
No 191
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=72.08 E-value=23 Score=31.97 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=57.6
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeC--CCCCeee
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSV--DTRTWEI 185 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~--~t~~W~~ 185 (316)
..+.+|+.+ +.+.+.++|..|++... ++. . ...+.+++. +..+|+.+. . ..+.+||. .+++ .
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g--~~~~~v~~spdg~~l~v~~~------d-~~V~v~D~~~~t~~--~ 214 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-G--YAVHISRMSASGRYLLVIGR------D-ARIDMIDLWAKEPT--K 214 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-S--TTEEEEEECTTSCEEEEEET------T-SEEEEEETTSSSCE--E
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEec-C--cccceEEECCCCCEEEEECC------C-CeEEEEECcCCCCc--E
Confidence 346777766 34789999999987643 321 1 111233232 345666553 2 56999999 5543 2
Q ss_pred cCCCCcccccCccccceeEEEe------CCEEEEEecccceEEEeeCCCCC
Q 040781 186 CQSMPAVLKDSAASTWLSVAVN------SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~------~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+..++. ..... ++++. |..+|+.+...+.|.+||..+.+
T Consensus 215 ~~~i~~--g~~p~----~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 215 VAEIKI--GIEAR----SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEC--CSEEE----EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred EEEEec--CCCcc----eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 222222 11111 44554 45677776556788999987765
No 192
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=71.29 E-value=40 Score=27.41 Aligned_cols=106 Identities=9% Similarity=-0.065 Sum_probs=56.5
Q ss_pred CCEEEEEc-CC--ceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCC---eee
Q 040781 113 STLLYTLS-PS--KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRT---WEI 185 (316)
Q Consensus 113 ~~~l~~~g-g~--~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~---W~~ 185 (316)
.|.+|+.. +. ..++.+|+.+++...+...+..+.....+. .+..+|+... ....+.++|..++. |..
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~ 155 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLE 155 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEE
Confidence 35567654 22 248888988888766533222222222222 2345555432 12467788877542 211
Q ss_pred cCC----CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCC
Q 040781 186 CQS----MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 186 ~~~----~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~ 228 (316)
-.. .+........ ++...++.+|+.....+.|.+||+..
T Consensus 156 ~~~~~~~~~~~~~~~pn----gis~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 156 HPMLARSNSESVFPAAN----GLKRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp CGGGSCSSTTCCSCSEE----EEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred CCccccccccCCCCcCC----CcCcCCCEEEEEeCCCCEEEEEEeCC
Confidence 110 1110011112 45556789999998778999999875
No 193
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=71.25 E-value=47 Score=30.92 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=44.7
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccc------cCccccceeEEEeCCEEEEEecccceEEE
Q 040781 152 LVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLK------DSAASTWLSVAVNSRQLYVTEKYSGITVS 223 (316)
Q Consensus 152 ~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~------~~~~~~~~~~~~~~~~~y~~~~~~~~i~~ 223 (316)
+.+++||+... ...+..+|..|++ |+.-...+.... .... ++++.++.+|+... .+.+.+
T Consensus 75 v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~a~~~~~v~v~~~-dg~l~a 142 (677)
T 1kb0_A 75 VVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR----GVALWKGKVYVGAW-DGRLIA 142 (677)
T ss_dssp EETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC----CCEEETTEEEEECT-TSEEEE
T ss_pred EECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCC----CceEECCEEEEEcC-CCEEEE
Confidence 47889888763 1347788888774 887533221000 1112 56778999998753 457899
Q ss_pred eeCCCCC--ccC
Q 040781 224 FDPSTKG--WSG 233 (316)
Q Consensus 224 yD~~~~~--W~~ 233 (316)
+|..+++ |+.
T Consensus 143 lD~~tG~~~W~~ 154 (677)
T 1kb0_A 143 LDAATGKEVWHQ 154 (677)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEeee
Confidence 9997665 653
No 194
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=70.90 E-value=32 Score=31.86 Aligned_cols=104 Identities=9% Similarity=-0.007 Sum_probs=48.3
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQ 187 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~ 187 (316)
.+.+++.| ..+.+.+||..++.....-. ..... .++.. +.+.++.|+. ...+.++|..... .....
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~------D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQIVSASR------DRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEET------TSCEEEECTTSCEEEEECS
T ss_pred CCCEEEEEeCCCcEEEEECCCCcceeEEe---CCCCCEEEEEEeCCCCEEEEEeC------CCEEEEEECCCCcceeecc
Confidence 34444444 34789999998875432100 01111 12221 2333444432 2347777765432 11111
Q ss_pred CCCcccccCccccceeEEEeCC---EEEEEecccceEEEeeCCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSR---QLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.. . .+... ..++++..+ .+.+.++..+.|..||+.+..
T Consensus 512 ~~-~--~h~~~--v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 512 GG-E--GHRDW--VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp ST-T--SCSSC--EEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CC-C--CCCCc--EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 11 1 11110 113333322 355666677789999998765
No 195
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=70.61 E-value=48 Score=30.81 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=44.3
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccC--ccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 152 LVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDS--AASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 152 ~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
+.+++||+... ...+..+|..|++ |+.-...+...... ......++++.++.+|+.. ..+.|.++|..
T Consensus 64 v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~l~alD~~ 135 (668)
T 1kv9_A 64 FHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-LDGRLIALDAK 135 (668)
T ss_dssp EETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-TTSEEEEEETT
T ss_pred EECCEEEEECC-------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc-CCCEEEEEECC
Confidence 47888888753 2357788887764 88753322100000 0000115667889998875 34678999998
Q ss_pred CCC--ccC
Q 040781 228 TKG--WSG 233 (316)
Q Consensus 228 ~~~--W~~ 233 (316)
+++ |+.
T Consensus 136 tG~~~W~~ 143 (668)
T 1kv9_A 136 TGKAIWSQ 143 (668)
T ss_dssp TCCEEEEE
T ss_pred CCCEeeee
Confidence 765 764
No 196
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=70.21 E-value=51 Score=30.88 Aligned_cols=103 Identities=10% Similarity=-0.017 Sum_probs=55.0
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCC--CCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDA--PRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~--~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
.++.||+.. +.+.+.++|+..+.-..+-. +..++ ++++ .+..+|+.... ....+++++.....-+.+
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSSSCCCCEE
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCCCCCeeEE
Confidence 346677764 45788899887665444422 11121 2322 23455654310 113466665543322222
Q ss_pred CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCC
Q 040781 187 QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
..... . ... ++++. ++.||+.....+.|.++|+...
T Consensus 535 ~~~~l--~-~Pn----Glavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 535 VTENI--Q-WPN----GITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SCSSC--S-SCC----CEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EeCCC--C-Ccc----EEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11100 1 112 56665 6899999987789999999754
No 197
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=69.80 E-value=28 Score=32.22 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=43.6
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS 199 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~ 199 (316)
+.+.+||..+++....-. ..... .++.. ++++++.|+.+ ..+.++|..+++= +..+.. ...
T Consensus 541 ~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~~~~~--~~~~~~--~~~--- 604 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDGSLCASGGKD------GVVLLWDLAEGKK--LYSLEA--NSV--- 604 (694)
T ss_dssp SCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETT------SBCEEEETTTTEE--EECCBC--SSC---
T ss_pred CeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCce--EEEecC--CCc---
Confidence 567777776654332101 01111 12222 34555555432 3477888877642 212211 111
Q ss_pred cceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 200 TWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 200 ~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..++++..+..++..+..+.|..||+.+..
T Consensus 605 -v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 605 -IHALCFSPNRYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp -EEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred -EEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence 114455544444444445568899988764
No 198
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=69.40 E-value=40 Score=27.25 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=14.9
Q ss_pred EEEEEecccceEEEeeCCCCC
Q 040781 210 QLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 210 ~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.+.++..+.|..||+.+..
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTE
T ss_pred cEEEEEcCCCEEEEEECCCCc
Confidence 455566666778889988765
No 199
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=69.07 E-value=27 Score=30.48 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~ 191 (316)
.+.||+......+.++|+.+++...+.... ..-..+++. ++++|+....... ....+..++.. +.+.....++.
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~--~~P~giavd~dG~lyVad~~~~~--~~~gv~~~~~~-~~~~~~~~~~~ 226 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNI--GQCADVNFTLNGDMVVVDDQSSD--TNTGIYLFTRA-SGFTERLSLCN 226 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECCCC--SCEEEEEECTTCCEEEEECCSCT--TSEEEEEECGG-GTTCCEEEEEE
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeecCC--CCccEEEECCCCCEEEEcCCCCc--ccceEEEEECC-CCeeccccccc
Confidence 477888763378999999888877664311 111123322 3447776521111 12234444432 22321101111
Q ss_pred ccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781 192 VLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
..... +++++ ++.+|+.....+.|..||+.+...
T Consensus 227 --~~~P~----giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 227 --ARGAK----TCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp --CSSBC----CCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred --cCCCC----EEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 11112 45555 588999987777899999986664
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=68.41 E-value=44 Score=26.77 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=58.6
Q ss_pred cCCEEEEE-------c-CCceeeeecCCCCceeecCCCC---CCCCCCEEEEE-C-CEEEEEcCcCCCCCCCcEEEEEeC
Q 040781 112 HSTLLYTL-------S-PSKLSFSFDPLHLAWHHVDAPR---VWRTDPVVALV-G-DKVVVAGGACDFEDDPLAVEMYSV 178 (316)
Q Consensus 112 ~~~~l~~~-------g-g~~~~~v~np~t~~w~~lp~~~---~~~~~~~~~~~-~-~~v~~~gg~~~~~~~~~~v~vy~~ 178 (316)
..+.+|+. + ..+.+++||+.++++..+..+. ....-..++.. + +++++... ...+.+||.
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~~l~~~d~ 99 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQT 99 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEET
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CCCEEEEeC
Confidence 34566766 3 3468999999998887653210 00111123332 3 57777653 125888998
Q ss_pred CCCCeeec-CCCCcccc-cCccccceeEEEe-CCEEEEEeccc---------------ceEEEeeCCCCCc
Q 040781 179 DTRTWEIC-QSMPAVLK-DSAASTWLSVAVN-SRQLYVTEKYS---------------GITVSFDPSTKGW 231 (316)
Q Consensus 179 ~t~~W~~~-~~~p~~~~-~~~~~~~~~~~~~-~~~~y~~~~~~---------------~~i~~yD~~~~~W 231 (316)
. ++.+.+ ........ .... ++++. +|.+|+..... +.|+.||+. ++.
T Consensus 100 ~-g~~~~~~~~~~~~~~~~~~~----~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 100 D-GTFEEIAKKDSEGRRMQGCN----DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp T-SCEEECCSBCTTSCBCBCCC----EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred C-CCEEEEEeccCCCccccCCc----CEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 8 766554 32111001 1111 44444 57788876532 578999987 443
No 201
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=68.20 E-value=79 Score=29.57 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=59.5
Q ss_pred CCEEEEEc-CC-ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLS-PS-KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~g-g~-~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
++.||+.. +. ..++++++....-+.+...... .-.++++- +.+||+.-. ....|++|+.....-+.+..
T Consensus 507 ~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~-~PnGlavd~~~~~LY~aD~------~~~~I~~~d~dG~~~~~~~~ 579 (699)
T 1n7d_A 507 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTILE 579 (699)
T ss_dssp SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS-SCCCEEECTTTCCEEEEET------TTTEEEEECSSSSCCEEECC
T ss_pred CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC-CccEEEEeccCCEEEEEec------CCCeEEEEccCCCceEEEEe
Confidence 56777765 32 5788877654333332111111 11134442 467887753 23568888886543333322
Q ss_pred CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+.. ..... ++++.++.+||.....+.|.++|+.+++
T Consensus 580 ~~~~-~~~P~----glavd~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 580 DEKR-LAHPF----SLAVFEDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CSSS-CSSCC----CCEEETTEEEEECSTTTCEEEEETTTEE
T ss_pred cCCc-CCCce----EeEEECCEEEEEeCCCCeEEEEEccCCC
Confidence 1110 11122 6778889999999777889999986554
No 202
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=68.04 E-value=48 Score=27.06 Aligned_cols=110 Identities=9% Similarity=-0.042 Sum_probs=54.3
Q ss_pred CCEEEEEc-CCceeeeecCCCC---ceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCC----CCCcEEEEEeCCCCCe
Q 040781 113 STLLYTLS-PSKLSFSFDPLHL---AWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFE----DDPLAVEMYSVDTRTW 183 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~---~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~----~~~~~v~vy~~~t~~W 183 (316)
+..||+.. +.+.+.+|++.+. ....+...+.+ ..++.- ++.+|+........ .....+.+||+....-
T Consensus 196 g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~ 272 (322)
T 2fp8_A 196 SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNP---GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNIL 272 (322)
T ss_dssp SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSE---EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCC---CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEE
Confidence 45677764 4468999987652 22222111111 122222 34677664210000 0124577888754332
Q ss_pred eecCCCCccc-ccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 184 EICQSMPAVL-KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 184 ~~~~~~p~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..+. .|... ..... +++..++.+|+.+...+.|..|++..+.
T Consensus 273 ~~~~-~~~g~~~~~~~----~~~~~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 273 EVIP-LPPPFAGEHFE----QIQEHDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEE-CCTTTTTSCCC----EEEEETTEEEEECSSCSEEEEEEC----
T ss_pred EEEE-CCCCCccccce----EEEEeCCEEEEeecCCCceEEEeccccc
Confidence 2222 12110 11122 5566789999998777789999987543
No 203
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=67.97 E-value=58 Score=27.93 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=68.5
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeee-ecCCEEEEEc-CCceeeeecCCCC----ceeecCCCCCCCCCCEEEE--EC
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRS-SHSTLLYTLS-PSKLSFSFDPLHL----AWHHVDAPRVWRTDPVVAL--VG 154 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~-s~~~~l~~~g-g~~~~~v~np~t~----~w~~lp~~~~~~~~~~~~~--~~ 154 (316)
+..+|........+. +.......+.. ...+.||... ..+.++.+++... ....+... ....-.++++ .+
T Consensus 94 I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavD~~~ 170 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIH 170 (400)
T ss_dssp EEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-SCSCEEEEEEETTT
T ss_pred eEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-CCCCcccEEEEecC
Confidence 555666655555442 21111111222 2358888876 4467888887652 22222110 1111123444 36
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEec-ccceEEEeeCCCCC
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEK-YSGITVSFDPSTKG 230 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~-~~~~i~~yD~~~~~ 230 (316)
..||+.-. ....+++++.....-+.+... . ..... +++++ ++.+|+... ..+.|..+|+....
T Consensus 171 ~~lY~~d~------~~~~I~~~~~~g~~~~~l~~~-~--~~~P~----~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 171 SNIYWTDS------VLGTVSVADTKGVKRKTLFRE-N--GSKPR----AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp TEEEEEET------TTTEEEEECTTTCSEEEEEEC-S--SCCEE----EEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CceEEEEC------CCCeEEEEeCCCCceEEEEeC-C--CCCcc----eEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 78888753 234688888876654443211 0 11112 67775 689999874 34678999987543
No 204
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=67.47 E-value=71 Score=29.81 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=44.4
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccCc--cccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 152 LVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDSA--ASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 152 ~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~~--~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
+.+++||+... ...+..+|..|++ |+.-...+....... .....++++.++.+|+.. ..+.|.++|..
T Consensus 68 v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-~dg~l~AlDa~ 139 (689)
T 1yiq_A 68 VVDGVMYTTGP-------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-LDGRLEAIDAK 139 (689)
T ss_dssp EETTEEEEECG-------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTSEEEEEETT
T ss_pred EECCEEEEEcC-------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-cCCEEEEEECC
Confidence 47889988753 1347778887764 886533221000000 000115667889999876 34678999998
Q ss_pred CCC--ccC
Q 040781 228 TKG--WSG 233 (316)
Q Consensus 228 ~~~--W~~ 233 (316)
+++ |+.
T Consensus 140 TG~~~W~~ 147 (689)
T 1yiq_A 140 TGQRAWSV 147 (689)
T ss_dssp TCCEEEEE
T ss_pred CCCEeeee
Confidence 765 653
No 205
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=67.31 E-value=51 Score=27.07 Aligned_cols=104 Identities=8% Similarity=-0.058 Sum_probs=60.9
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCC--CCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDA--PRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~--~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
.++.||+.. +.+.+.++|+..+.-+.+-. +..+ .++++. +..+|+.... ....++.++.....=+.+
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-----~~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCCEEEE
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC-----CCCeEEEEcCCCCCeEEE
Confidence 467788775 55789999987654443321 1111 134442 5678876521 124688887754332222
Q ss_pred CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 187 QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
... . ..... ++++. ++.+|+.....+.|.++|+....
T Consensus 159 ~~~-~--~~~P~----gla~d~~~~~lY~~D~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 159 VTE-N--IQWPN----GITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (316)
T ss_dssp ECS-S--CSCEE----EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEC-C--CCCce----EEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence 111 0 11112 67776 78999999888899999997543
No 206
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=67.20 E-value=67 Score=29.44 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=42.8
Q ss_pred cCCE----EEEEcCCceeeeecCCCCc--eee-cCCCC-CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-
Q 040781 112 HSTL----LYTLSPSKLSFSFDPLHLA--WHH-VDAPR-VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT- 182 (316)
Q Consensus 112 ~~~~----l~~~gg~~~~~v~np~t~~--w~~-lp~~~-~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~- 182 (316)
.++. ||+......++.+|..|++ |+. ++... .........+.+++||+-.+..... ....+..||..|++
T Consensus 116 ~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g-~~g~v~A~D~~TG~~ 194 (599)
T 1w6s_A 116 GDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELG-VRGYLTAYDVKTGEQ 194 (599)
T ss_dssp CCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGT-CCCEEEEEETTTCCE
T ss_pred cCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccC-CCCeEEEEECCCCcE
Confidence 4566 7877666789999999986 653 32211 1111122233677777643211111 23568899998875
Q ss_pred -eeec
Q 040781 183 -WEIC 186 (316)
Q Consensus 183 -W~~~ 186 (316)
|+.-
T Consensus 195 ~W~~~ 199 (599)
T 1w6s_A 195 VWRAY 199 (599)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 8764
No 207
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=64.61 E-value=53 Score=26.25 Aligned_cols=135 Identities=11% Similarity=-0.046 Sum_probs=67.0
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCC----CCCCCCEEEEECCEE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPR----VWRTDPVVALVGDKV 157 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~----~~~~~~~~~~~~~~v 157 (316)
+..+|+..+ ...+.. +. ...........|.+++.. +...+.+||+.+++...+.... ..........-++++
T Consensus 52 i~~~~~~~~-~~~~~~-~~-~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l 128 (296)
T 3e5z_A 52 TWAWSDDGQ-LSPEMH-PS-HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL 128 (296)
T ss_dssp EEEEETTSC-EEEEES-SC-SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCE
T ss_pred EEEEECCCC-eEEEEC-CC-CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCE
Confidence 566787766 444421 21 111122333345566655 4578999999998877653211 111111221124677
Q ss_pred EEE----cCcCC-------CCCCCcEEEEEeCCCCCeeecC-CCCcccccCccccceeEEEe-CCEEEEEecccceEEEe
Q 040781 158 VVA----GGACD-------FEDDPLAVEMYSVDTRTWEICQ-SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSF 224 (316)
Q Consensus 158 ~~~----gg~~~-------~~~~~~~v~vy~~~t~~W~~~~-~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~y 224 (316)
++. |.... .......+..|+.. ++-+.+. .... .. ++++. ++.+++.+...+.|..|
T Consensus 129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-----~~----gi~~s~dg~~lv~~~~~~~i~~~ 198 (296)
T 3e5z_A 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK-----PN----GLAFLPSGNLLVSDTGDNATHRY 198 (296)
T ss_dssp EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS-----EE----EEEECTTSCEEEEETTTTEEEEE
T ss_pred EEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC-----Cc----cEEECCCCCEEEEeCCCCeEEEE
Confidence 775 32100 00112367777776 5444432 1111 11 44544 34444766666788999
Q ss_pred eCC-CCC
Q 040781 225 DPS-TKG 230 (316)
Q Consensus 225 D~~-~~~ 230 (316)
|+. +++
T Consensus 199 ~~~~~g~ 205 (296)
T 3e5z_A 199 CLNARGE 205 (296)
T ss_dssp EECSSSC
T ss_pred EECCCCc
Confidence 986 444
No 208
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=64.42 E-value=54 Score=26.32 Aligned_cols=134 Identities=7% Similarity=-0.041 Sum_probs=64.8
Q ss_pred cCCEEEEEcC-CceeeeecCCCCceeecC--C-CCCC--CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC-Cee
Q 040781 112 HSTLLYTLSP-SKLSFSFDPLHLAWHHVD--A-PRVW--RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR-TWE 184 (316)
Q Consensus 112 ~~~~l~~~gg-~~~~~v~np~t~~w~~lp--~-~~~~--~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~-~W~ 184 (316)
.|..++..++ ...++.+||.-+.-.+++ . .... .........++.+++... ....+.+||.... .|+
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~------~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF------ATSEVREIAPNGQLLNS 160 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET------TTTEEEEECTTSCEEEE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec------CCCEEEEECCCCCEEEE
Confidence 3455554445 678888998433222221 1 0000 001111122344444432 2356888998722 366
Q ss_pred ecCC-CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccCCC-cCCCCCcccceeeeeeEeeCCEEEE
Q 040781 185 ICQS-MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSGPF-HLRQFDHEKKVFYSVITFANDRLIA 260 (316)
Q Consensus 185 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~~~-~l~~~~~~~~~~~~~l~~~~g~L~v 260 (316)
.-.. .|. . .....++.+++.+...+.|.+||+.+++ |+.-. .++.. . ...........+|.+|+
T Consensus 161 ~~~~~~~~------~----~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-~-l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 161 VKLSGTPF------S----SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-Q-LFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp EECSSCCC------E----EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-C-CSEEEEEEECTTSCEEE
T ss_pred EECCCCcc------c----eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-c-ccccccceEcCCCCEEE
Confidence 4322 111 1 2333467788877766789999999665 44211 11111 0 01111223345788888
Q ss_pred Eec
Q 040781 261 VGL 263 (316)
Q Consensus 261 ~g~ 263 (316)
...
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 874
No 209
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=64.40 E-value=84 Score=28.51 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=44.3
Q ss_pred EECCEEEEEcCcCCCCCCCcEEEEEeC-CCCC--eeecCCCCcccc------cCccccceeEEEeCCEEEEEecccceEE
Q 040781 152 LVGDKVVVAGGACDFEDDPLAVEMYSV-DTRT--WEICQSMPAVLK------DSAASTWLSVAVNSRQLYVTEKYSGITV 222 (316)
Q Consensus 152 ~~~~~v~~~gg~~~~~~~~~~v~vy~~-~t~~--W~~~~~~p~~~~------~~~~~~~~~~~~~~~~~y~~~~~~~~i~ 222 (316)
+.+++||+.... ...+..+|. .+++ |+.-...+.... .... ++++.++.+|+... .+.+.
T Consensus 60 v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~v~~~-dg~l~ 128 (571)
T 2ad6_A 60 VIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR----GLAYGAGQIVKKQA-NGHLL 128 (571)
T ss_dssp EETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC----CCEEETTEEEEECT-TSEEE
T ss_pred EECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCcccccccccccccc----ccEEECCEEEEEeC-CCEEE
Confidence 468899987642 234778898 7764 887532211000 1112 56678999998764 45789
Q ss_pred EeeCCCCC--cc
Q 040781 223 SFDPSTKG--WS 232 (316)
Q Consensus 223 ~yD~~~~~--W~ 232 (316)
++|..+++ |+
T Consensus 129 alD~~tG~~~W~ 140 (571)
T 2ad6_A 129 ALDAKTGKINWE 140 (571)
T ss_dssp EEETTTCCEEEE
T ss_pred EEECCCCCEEEE
Confidence 99998764 65
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=64.29 E-value=56 Score=26.41 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=54.3
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
++.||.++ ..+.++.||+ +++...+...... ..+++.. ++++++... ....+..|+.. ++.+.+....
T Consensus 56 g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~--~~gl~~d~dG~l~v~~~------~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 56 QRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAF--TNGNAVDAQQRLVHCEH------GRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp GTEEEEEETTTTEEEEEET-TSCEEEEEESCSC--EEEEEECTTSCEEEEET------TTTEEEEECTT-SCEEEEECEE
T ss_pred CCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCc--cceeeECCCCCEEEEEC------CCCEEEEECCC-CCEEEEEecc
Confidence 45455555 4478899998 5555444211111 1122222 356666532 12457778875 5555442211
Q ss_pred cccc-cCccccceeEEEe-CCEEEEEe----c-------------ccceEEEeeCCCCCccCC
Q 040781 191 AVLK-DSAASTWLSVAVN-SRQLYVTE----K-------------YSGITVSFDPSTKGWSGP 234 (316)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~-~~~~y~~~----~-------------~~~~i~~yD~~~~~W~~~ 234 (316)
.... .... .+++. +|.+|+.. . ..+.|+.||+.++++..+
T Consensus 126 ~~~~~~~~~----~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 126 AGKRLNSPN----DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp TTEECSCCC----CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred CCCccCCCC----CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 1001 0111 23333 67888852 1 124689999987775543
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=63.99 E-value=60 Score=26.66 Aligned_cols=131 Identities=7% Similarity=-0.135 Sum_probs=64.2
Q ss_pred eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC---EEEE-ECCEEE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP---VVAL-VGDKVV 158 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~---~~~~-~~~~v~ 158 (316)
++.||+..++...+.. + ...........|.+++... ..++++|+.+++...+.......... .++. -+++++
T Consensus 73 i~~~d~~~~~~~~~~~-~--~~v~~i~~~~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 148 (326)
T 2ghs_A 73 LHELHLASGRKTVHAL-P--FMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALW 148 (326)
T ss_dssp EEEEETTTTEEEEEEC-S--SCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEE
T ss_pred EEEEECCCCcEEEEEC-C--CcceEEEEeCCCeEEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEE
Confidence 6678877665544421 2 1111222233455555443 46999999999887663221111111 1111 135666
Q ss_pred EEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCC
Q 040781 159 VAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 159 ~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~ 227 (316)
+.............+..|+ +++.+.+.. . ..... ++++. +..+|+.+...+.|..||..
T Consensus 149 v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~--~~~~~----~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 149 IGTMGRKAETGAGSIYHVA--KGKVTKLFA--D--ISIPN----SICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEETTCCTTCEEEEEEE--TTEEEEEEE--E--ESSEE----EEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred EEeCCCcCCCCceEEEEEe--CCcEEEeeC--C--CcccC----CeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 5331111111234577777 455444311 0 01111 44444 44688887666789999975
No 212
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=63.58 E-value=60 Score=26.55 Aligned_cols=100 Identities=9% Similarity=0.013 Sum_probs=46.6
Q ss_pred EEEc-CCceeeeecCCCCceeecCCCCCC-CCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCC-----Ceeec
Q 040781 117 YTLS-PSKLSFSFDPLHLAWHHVDAPRVW-RTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTR-----TWEIC 186 (316)
Q Consensus 117 ~~~g-g~~~~~v~np~t~~w~~lp~~~~~-~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~-----~W~~~ 186 (316)
++.| ..+.+.+||..++....+...... .... .++.. +.++++.|+.+ ..+.++|..+. .++.+
T Consensus 27 las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D------~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD------STVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT------SCEEEEEC-------CCCEEE
T ss_pred EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC------CcEEEEEcccCcCccccceeE
Confidence 3444 346889999877654332211111 1112 12221 34555555532 34778877532 22221
Q ss_pred CCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCC
Q 040781 187 QSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~ 227 (316)
..+. .+.. ...++++. ++.+.+.++..+.|..||+.
T Consensus 101 ~~~~---~h~~--~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 101 AIIE---GHEN--EVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp EEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred EEEc---CCCC--cEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 1110 1111 11134444 46666677777889999984
No 213
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=63.58 E-value=56 Score=26.20 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=32.7
Q ss_pred CEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCC----EEEEEecCCCCCCcceeeEEEee
Q 040781 209 RQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAND----RLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 209 ~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g----~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.+.+.++..+.+..++...+....+..+... ..... +....-++ ++++.++.... +.+|.+.
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~-~~~~~p~~~~~~~~l~s~~~dg~-----i~iwd~~ 248 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH--KSLIR-SISWAPSIGRWYQLIATGCKDGR-----IRIFKIT 248 (351)
T ss_dssp CCEEEEEETTEEEEEEECTTSCEEEEEECCCC--CSCEE-EEEECCCSSCSSEEEEEEETTSC-----EEEEEEE
T ss_pred CcEEEEecCCCcEEEEccCCCceeeeeecCCC--Cccee-EEEECCCCCCcceEEEEEcCCCe-----EEEEeCC
Confidence 55666666666666667666654333323222 01111 11122233 67777754433 9999998
No 214
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=63.50 E-value=53 Score=25.88 Aligned_cols=102 Identities=8% Similarity=-0.007 Sum_probs=60.5
Q ss_pred CCEEEEEcC---CceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-
Q 040781 113 STLLYTLSP---SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC- 186 (316)
Q Consensus 113 ~~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~- 186 (316)
++.||+... .+.++++++....-..+..... ..-.++++. +.++|+.-. ....+.+||..+..=+.+
T Consensus 133 ~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~------~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDA------GTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEET------TTTEEEEEETTEEEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEEC------CCCEEEEEecCCCceEEEe
Confidence 688888762 3578888775443333311111 111234443 468888763 235688888875432222
Q ss_pred CCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 187 QSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
... .... ++++.++.+|+.....+.|..+|+.+.+
T Consensus 206 ~~~-----~~P~----gi~~d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 206 EGL-----QYPF----AVTSYGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp ECC-----CSEE----EEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred cCC-----CCce----EEEEeCCEEEEEECCCCeEEEEeCCCCC
Confidence 111 1112 6778899999998777789999998765
No 215
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=63.21 E-value=56 Score=26.62 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=46.6
Q ss_pred EEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeee
Q 040781 172 AVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSV 250 (316)
Q Consensus 172 ~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~ 250 (316)
.+.+||..+++-...-.- . ... ..++++. ++.+.+.++..+.|..||+.+.+-.... ..+ .... ..
T Consensus 55 ~i~vwd~~~~~~~~~~~~-h--~~~----v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~---~~v~-~~ 121 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLDG-H--TGT----IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW--KSP---VPVK-RV 121 (369)
T ss_dssp CEEEEETTTCCEEEEECC-C--SSC----EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECS---SCEE-EE
T ss_pred EEEEEeCCCchhhhhhhh-c--CCc----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ecC---CCeE-EE
Confidence 477888776543221110 0 111 1134444 4556666667788999999877632211 111 1111 11
Q ss_pred eEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 251 ITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 251 l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
....+++.++++..........+.+|.++
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 122 EFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp EECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred EEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 12335555555543322223458888887
No 216
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=61.07 E-value=68 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=16.7
Q ss_pred eEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 203 SVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+++..+.-++..+..+.|..||+.+..
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 4444433334445555678999987654
No 217
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=60.68 E-value=69 Score=26.29 Aligned_cols=22 Identities=14% Similarity=-0.232 Sum_probs=14.8
Q ss_pred CEEEEEc-CCceeeeecCCCCce
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAW 135 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w 135 (316)
+.+++.| ..+.+.+||..+++.
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTT 110 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCE
T ss_pred CCEEEEEcCCCcEEEEECCCCcE
Confidence 4334444 347899999988764
No 218
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=60.45 E-value=31 Score=28.16 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.++++.++ ....+.++|..+++-...-..+. ..... ++++. +..+|+.+...+.|..||+.+.+
T Consensus 10 ~~~~~v~~~------~~~~v~~~d~~~~~~~~~~~~~~--~~~~~----~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 10 GHEYMIVTN------YPNNLHVVDVASDTVYKSCVMPD--KFGPG----TAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp TCEEEEEEE------TTTEEEEEETTTTEEEEEEECSS--CCSSC----EEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEeC------CCCeEEEEECCCCcEEEEEecCC--CCCCc----eeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 455666654 23568899998876543322211 00112 33443 45688887766789999998775
No 219
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=60.27 E-value=65 Score=25.84 Aligned_cols=131 Identities=8% Similarity=-0.039 Sum_probs=59.2
Q ss_pred ceEEeeCCCCc--eeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEE-ECCE
Q 040781 82 TAHAYDARSHV--WIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVAL-VGDK 156 (316)
Q Consensus 82 ~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~-~~~~ 156 (316)
.+..+|...++ |..-. +-.........+..|.+++ .+.+.++++|| +++ |+.- . +.......... .+++
T Consensus 16 ~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~-~-~~~~~~~~~~~~~dG~ 89 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYPL--EKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIA-A-PAGCEMQTARILPDGN 89 (276)
T ss_dssp EEEEEETTTTEEEEEEEC--CTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEE-C-CTTCEEEEEEECTTSC
T ss_pred EEEEEECCCCeEEEEeCC--CccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEc-C-CCCccccccEECCCCC
Confidence 36678885553 54331 2111112222333444555 34568999999 665 4322 1 10001111222 2455
Q ss_pred EEEEcCcCCCCCCCcEEEEEeCCCC-Ceeec-C-CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781 157 VVVAGGACDFEDDPLAVEMYSVDTR-TWEIC-Q-SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 157 v~~~gg~~~~~~~~~~v~vy~~~t~-~W~~~-~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~ 227 (316)
+++.... ....+..+|+... .|+.- . ..+........ .....+|.+++.....+.|.+||++
T Consensus 90 ~lv~~~~-----~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~----v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 90 ALVAWCG-----HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQ----INKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEES-----TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSC----CEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEEecC-----CCCEEEEEeCCCCEEEEEeccCCCCcccccccC----ceECCCCCEEEEecCCCEEEEECCC
Confidence 5554321 1245667776433 24432 1 11110011111 1122355666666666789999997
No 220
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=60.12 E-value=65 Score=25.85 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=64.4
Q ss_pred ceEEeeCCCCceeEccCCCCCC---ccceeeee-cCCEEEEEcC-CceeeeecCCCCceee-cCCCCCC---CCCCEEEE
Q 040781 82 TAHAYDARSHVWIEIKNNQPSS---FDFLLRSS-HSTLLYTLSP-SKLSFSFDPLHLAWHH-VDAPRVW---RTDPVVAL 152 (316)
Q Consensus 82 ~~~~~d~~~~~w~~~~~~~~~~---~~~~~~~s-~~~~l~~~gg-~~~~~v~np~t~~w~~-lp~~~~~---~~~~~~~~ 152 (316)
.+..+|....+....- +... .......+ .+..+|+.+. .+.+.+||+.+++... ++..... .....++.
T Consensus 12 ~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVI--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL 89 (337)
T ss_dssp EEEEEETTTTEEEEEE--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred eEEEEECCCCcEEEEE--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEE
Confidence 3667888766543221 2111 11223333 3457777653 4789999999887543 3211100 01112333
Q ss_pred E--CCEEEEEcCc---CCCCC--CCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEE
Q 040781 153 V--GDKVVVAGGA---CDFED--DPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVS 223 (316)
Q Consensus 153 ~--~~~v~~~gg~---~~~~~--~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~ 223 (316)
. +..+++.... ..... ....+.+||..+++-...-.... . .. ++++. +..+|+.+ +.|..
T Consensus 90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~--~~----~~~~s~dg~~l~~~~---~~i~~ 158 (337)
T 1pby_B 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--Q--IT----MLAWARDGSKLYGLG---RDLHV 158 (337)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--S--CC----CEEECTTSSCEEEES---SSEEE
T ss_pred CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC--C--cc----eeEECCCCCEEEEeC---CeEEE
Confidence 2 3456665311 00000 13568999998776433211111 1 11 22232 34466652 35777
Q ss_pred eeCCCCC
Q 040781 224 FDPSTKG 230 (316)
Q Consensus 224 yD~~~~~ 230 (316)
||+.+.+
T Consensus 159 ~d~~~~~ 165 (337)
T 1pby_B 159 MDPEAGT 165 (337)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 7876654
No 221
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=59.59 E-value=76 Score=28.80 Aligned_cols=106 Identities=10% Similarity=0.130 Sum_probs=52.8
Q ss_pred CEEEEEc-CCceeeeecCCCCceee-cCCC--CC-CCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAP--RV-WRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI 185 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~--~~-~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~ 185 (316)
+.+++.+ ..+.+.+||..+++... +... .. ..... .++.. +++.++.++. ...+.++|..+++...
T Consensus 202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~------D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEK 275 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC------CCeEEEEeCCCCceee
Confidence 4444444 44789999988876533 2110 00 11112 22222 3445555542 2568899988876543
Q ss_pred cCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.-.......... .++.. ++...+.++..+.|..||+.+..
T Consensus 276 ~~~~~~~~~~~~----~~~~~-~~~~l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 276 TIPVGTRIEDQQ----LGIIW-TKQALVSISANGFINFVNPELGS 315 (611)
T ss_dssp EEECCSSGGGCE----EEEEE-CSSCEEEEETTCCEEEEETTTTE
T ss_pred eecCCCCcccee----EEEEE-cCCEEEEEeCCCcEEEEeCCCCC
Confidence 311111001111 13333 34444555566778889987654
No 222
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=57.55 E-value=57 Score=27.73 Aligned_cols=108 Identities=9% Similarity=0.023 Sum_probs=50.8
Q ss_pred CEEEEEcCCceeeeecCCC-Cc-eeec--CCCCC-CCCCC--EEEEE-CC-EEEEEcCcCCCCCCCcEEEEEeCCCCCe-
Q 040781 114 TLLYTLSPSKLSFSFDPLH-LA-WHHV--DAPRV-WRTDP--VVALV-GD-KVVVAGGACDFEDDPLAVEMYSVDTRTW- 183 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t-~~-w~~l--p~~~~-~~~~~--~~~~~-~~-~v~~~gg~~~~~~~~~~v~vy~~~t~~W- 183 (316)
+.+++.|..+.+.+||..+ ++ ...+ .+... ..... .++.. .. .+++.|+.+ ..+.+||..+++-
T Consensus 189 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 189 YETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK------GTIRLCDMRASALC 262 (447)
T ss_dssp SSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT------SCEEEEETTTCSSS
T ss_pred CCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC------CeEEEEECcCCccc
Confidence 4445555557899999874 32 2221 11111 11111 22222 22 566666532 3588999887763
Q ss_pred ----eecCCCCccccc----CccccceeEEEe-CCEEEEEecccceEEEeeCCC
Q 040781 184 ----EICQSMPAVLKD----SAASTWLSVAVN-SRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 184 ----~~~~~~p~~~~~----~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~ 228 (316)
..+..-...... .......++++. ++.+.+.++. +.|..||+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 222111000000 000011134444 4555556656 8999999986
No 223
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=57.54 E-value=76 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=15.1
Q ss_pred eeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 253 FANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 253 ~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
.-+|+.++.|+.... +.||.+.
T Consensus 295 spdg~~l~sg~~Dg~-----i~vWd~~ 316 (319)
T 3frx_A 295 SADGQTLFAGYTDNV-----IRVWQVM 316 (319)
T ss_dssp CTTSSEEEEEETTSC-----EEEEEEE
T ss_pred CCCCCEEEEeecCce-----EEEEEEe
Confidence 346777777754443 9999987
No 224
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=57.40 E-value=4.7 Score=22.60 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcCC
Q 040781 18 NSIVHGDILEAILSQVP 34 (316)
Q Consensus 18 ~~~Lp~dll~~IL~rLp 34 (316)
+..||.||.+|||+--.
T Consensus 21 F~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 21 FKQLPADIQEEILSGKS 37 (48)
T ss_dssp TTTSCHHHHHHHTTCCC
T ss_pred HHHCcHHHHHHHHhcch
Confidence 67899999999988544
No 225
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=56.74 E-value=78 Score=25.69 Aligned_cols=103 Identities=6% Similarity=-0.018 Sum_probs=53.8
Q ss_pred CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
|.+++.| ..+.+.+||..+............... ..++.. +.+.++.|+. ...+.+||..+++-......
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~- 126 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC------DKTAKMWDLSSNQAIQIAQH- 126 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEEC-
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC------CCcEEEEEcCCCCceeeccc-
Confidence 3555555 347899999877322211001100100 122222 3444555542 24688999988765443211
Q ss_pred cccccCccccceeEEE---eCCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAV---NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~---~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..... ++++ .++.+.+.++..+.|..||+.+.+
T Consensus 127 ---~~~v~----~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 127 ---DAPVK----TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp ---SSCEE----EEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ---cCceE----EEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 11111 3443 356667777777889999998765
No 226
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=56.00 E-value=31 Score=28.27 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=35.7
Q ss_pred EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCc
Q 040781 156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGW 231 (316)
Q Consensus 156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W 231 (316)
+.++.|+. ...+.+||..++.......+. .+.. ...++++. ++.+.+.++..+.|..||+.+..-
T Consensus 55 ~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~---~h~~--~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 55 NFLIAGSW------ANDVRCWEVQDSGQTIPKAQQ---MHTG--PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp EEEEEEET------TSEEEEEEECTTSCEEEEEEE---ECSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEECC------CCcEEEEEcCCCCceeEEEec---cccC--CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence 66666653 245888888764333211110 0110 01134444 455566666777899999988763
No 227
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=54.96 E-value=1.1e+02 Score=26.98 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=46.6
Q ss_pred EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccc
Q 040781 115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVL 193 (316)
Q Consensus 115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~ 193 (316)
.|...+..+.+.+||...+....+...... -..++.. +.+.++.++. ...+.++|.....=+.+..
T Consensus 440 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--v~~~~~spd~~~las~~~------d~~i~iw~~~~~~~~~~~~----- 506 (577)
T 2ymu_A 440 TIASASDDKTVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASD------DKTVKLWNRNGQLLQTLTG----- 506 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECCSSC--EEEEEECTTSCEEEEEET------TSEEEEEETTSCEEEEEEC-----
T ss_pred EEEEEcCCCEEEEEECCCCEEEEEcCCCCC--EEEEEEcCCCCEEEEEeC------CCEEEEEcCCCCEEEEEeC-----
Confidence 333333456889999654444443221111 0122222 3455555542 2457888853321111111
Q ss_pred ccCccccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781 194 KDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
+... ..++++. ++.+.+.++..+.|..||...+
T Consensus 507 -h~~~--v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 507 -HSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQ 540 (577)
T ss_dssp -CSSC--EEEEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred -CCCC--EEEEEEcCCCCEEEEEECcCEEEEEeCCCC
Confidence 1110 1133333 4556666667778999996543
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=52.83 E-value=1e+02 Score=25.97 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=58.5
Q ss_pred cCCEEEEEcC--Cc---eeeeecCCCCcee-ecCCCCCCCCCCEEEEECCEEEEEcCcCCC---CCCCcEEEEEeCCCCC
Q 040781 112 HSTLLYTLSP--SK---LSFSFDPLHLAWH-HVDAPRVWRTDPVVALVGDKVVVAGGACDF---EDDPLAVEMYSVDTRT 182 (316)
Q Consensus 112 ~~~~l~~~gg--~~---~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~---~~~~~~v~vy~~~t~~ 182 (316)
.+..+|+..+ .+ .+.++|+.|++-. .+|.-. . ....+..-+..+|+....... +.....+.+||..+.+
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~-p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-L-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-C-CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 4566777764 23 7899999987753 343211 1 122222235678887532111 1123568899998754
Q ss_pred eeecCCCC---ccc-ccCccccceeEEE--eCCEEEEEecc-cceEEEeeCCCCC
Q 040781 183 WEICQSMP---AVL-KDSAASTWLSVAV--NSRQLYVTEKY-SGITVSFDPSTKG 230 (316)
Q Consensus 183 W~~~~~~p---~~~-~~~~~~~~~~~~~--~~~~~y~~~~~-~~~i~~yD~~~~~ 230 (316)
=...-+++ ... ..... ++++ .|..+|+.... .+.|.++| .+++
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~----~~~~spDG~~l~v~n~~~~~~v~viD-~t~~ 158 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSW----MNANTPNNADLLFFQFAAGPAVGLVV-QGGS 158 (373)
T ss_pred EEEEEECCCccccccCCCcc----ceEECCCCCEEEEEecCCCCeEEEEE-CCCC
Confidence 21111111 000 00111 2333 46788988743 56789999 8775
No 229
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=51.15 E-value=1.1e+02 Score=25.59 Aligned_cols=137 Identities=11% Similarity=0.021 Sum_probs=60.4
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
+.+.+||+.+++........ ..-..++.. +++.++.++. ..+.+++..++.-...... . .+.. ..
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~~~-~--~~~~--~v 222 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GEVKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARKTD-F--DKNW--SL 222 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SCCCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEECC-C--CTTE--EE
T ss_pred CEEEEeECCCCcEEEEeCCC--CceEEEEEccCCceEEeccc-------eeEEEEEeccCcceeeeec-C--CCCC--CE
Confidence 67999999988765432211 111233332 3444444431 2356666666553322111 0 1100 01
Q ss_pred eeEEE-eCCEEEEEecccc----eEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEE
Q 040781 202 LSVAV-NSRQLYVTEKYSG----ITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIW 276 (316)
Q Consensus 202 ~~~~~-~~~~~y~~~~~~~----~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw 276 (316)
.++++ -++.+.+.++..+ .+..+|..................... .+....-+|++++.|+... .+.||
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~Spdg~~lasgs~D~-----~V~iw 296 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI-TSMDVDMKGELAVLASNDN-----SIALV 296 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE-EEEEECTTSCEEEEEETTS-----CEEEE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe-EeEEECCCCCceEEEcCCC-----EEEEE
Confidence 12333 2555555544222 456677665443211100000000111 1112234677777775433 38888
Q ss_pred Eee
Q 040781 277 QVN 279 (316)
Q Consensus 277 ~l~ 279 (316)
.++
T Consensus 297 d~~ 299 (365)
T 4h5i_A 297 KLK 299 (365)
T ss_dssp ETT
T ss_pred ECC
Confidence 876
No 230
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=49.95 E-value=49 Score=28.18 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=36.9
Q ss_pred CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...++.|+. ...+.+||..+++-... ...+. ... ..++++. ++.+.+.++..+.|..||+.+..
T Consensus 182 ~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~h--~~~----v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 182 KSLLVALTN------LSRVIIFDIRTLERLQIIENSPR--HGA----VSSICIDEECCVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp CEEEEEEET------TSEEEEEETTTCCEEEEEECCGG--GCC----EEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEeC------CCeEEEEeCCCCeeeEEEccCCC--CCc----eEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence 556666653 35688999887653222 11101 111 1144444 45666667777889999998754
No 231
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=49.07 E-value=45 Score=30.37 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=46.5
Q ss_pred cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCC-CCccCCCcCCCCCcccceee
Q 040781 171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPST-KGWSGPFHLRQFDHEKKVFY 248 (316)
Q Consensus 171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~-~~W~~~~~l~~~~~~~~~~~ 248 (316)
..+.+||..++....+..... ... ..++++. ++.+.+.++..+.|..||..+ .+-......... .....
T Consensus 470 ~~v~lwd~~~~~~~~~~~~~h--~~~----v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H--~~~V~- 540 (611)
T 1nr0_A 470 SKVHVYKLSGASVSEVKTIVH--PAE----ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--TAKVA- 540 (611)
T ss_dssp SEEEEEEEETTEEEEEEEEEC--SSC----EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC--SSCEE-
T ss_pred CeEEEEEccCCceeeeeccCC--CCc----eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec--cccee-
Confidence 457788776665533211101 111 1134443 456666666777889999876 321111001101 01111
Q ss_pred eeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 249 SVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 249 ~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+....-+|++++.++.+. .+.||.++
T Consensus 541 ~v~fspdg~~lasgs~D~-----~v~lW~~~ 566 (611)
T 1nr0_A 541 CVSWSPDNVRLATGSLDN-----SVIVWNMN 566 (611)
T ss_dssp EEEECTTSSEEEEEETTS-----CEEEEETT
T ss_pred EEEECCCCCEEEEEECCC-----cEEEEECC
Confidence 122233666666665433 39999997
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=47.98 E-value=1.1e+02 Score=24.92 Aligned_cols=99 Identities=9% Similarity=-0.007 Sum_probs=54.1
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p 190 (316)
++.+|.++ ..+.+++||+.+++...+.. +. .-..++. -++++++... ..+.+||..+++.+.+...+
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSS
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEeeCC
Confidence 46666665 34689999999887665432 11 1112222 3567666531 24888999888887663322
Q ss_pred cccccCccccceeEEEe-CCEEEEEec------ccceEEEee
Q 040781 191 AVLKDSAASTWLSVAVN-SRQLYVTEK------YSGITVSFD 225 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~------~~~~i~~yD 225 (316)
....... ...+++. +|.+|+... ..+.|+.||
T Consensus 129 ~~~~~~~---~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 129 SDLPGNR---SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp TTCTTEE---EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCCC---CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 1001000 0133333 566777543 124688888
No 233
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=47.17 E-value=1.7e+02 Score=26.85 Aligned_cols=102 Identities=7% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CEEEEEc-C-CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781 114 TLLYTLS-P-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP 190 (316)
Q Consensus 114 ~~l~~~g-g-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p 190 (316)
|.||... | ...++..++....-..+-.--.....-++...+.++|+.-. ....++.+|.....=+.+ ..++
T Consensus 135 G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~------~~~~I~~~d~dG~~~~v~~~~l~ 208 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDL------DTNLIESSNMLGLNREVIADDLP 208 (628)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEECCS
T ss_pred CeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEEC------CCCEEEEEcCCCCceEEeeccCC
Q ss_pred cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.+. ++++.++.+|+.....+.|..+|..+++
T Consensus 209 ~P~---------glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 209 HPF---------GLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp CEE---------EEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred Cce---------EEEEECCEEEEecCCCCEEEEEECCCCC
No 234
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=45.30 E-value=1.4e+02 Score=25.26 Aligned_cols=128 Identities=12% Similarity=-0.016 Sum_probs=68.9
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCC--CCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDA--PRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~--~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
++.||+.. +.+.+.++++..+.-..+.. +..| .++++. +..+|..-.. ....++.++.....=+.+.
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~ 241 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG-----NTPRIEASSMDGSGRRIIA 241 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCSCEEEE
T ss_pred CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC-----CCCEEEEEeCCCCCcEEEE
Confidence 57777765 45678888876544333311 1111 133433 5677776421 1256888887654322221
Q ss_pred CCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCC--cCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781 188 SMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPF--HLRQFDHEKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~--~l~~~~~~~~~~~~~l~~~~g~L~v~g~ 263 (316)
.. . ..... ++++. ++.+|+.....+.|.++|+....-..+. .+..| ..+...++.||+...
T Consensus 242 ~~-~--~~~Pn----Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P--------~giav~~~~ly~td~ 306 (386)
T 3v65_B 242 DT-H--LFWPN----GLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP--------FAITVFEDSLYWTDW 306 (386)
T ss_dssp CS-S--CSCEE----EEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE--------EEEEEETTEEEEEET
T ss_pred EC-C--CCCee----eEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc--------eEEEEECCEEEEeeC
Confidence 10 0 01112 67775 7999999988889999998754311111 12222 233335777877764
No 235
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=44.62 E-value=1.9e+02 Score=26.51 Aligned_cols=64 Identities=13% Similarity=-0.031 Sum_probs=33.3
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC-----CCeeec
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT-----RTWEIC 186 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t-----~~W~~~ 186 (316)
+.+.+..+ +.+++||..+++...+..............-+..++... ...+.++|..+ ++-..+
T Consensus 93 ~~~~~~~~-~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~--------~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 93 GLVVLFTQ-GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR--------NHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp TEEEEEET-TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE--------TTEEEEEECBCTTSCCCCCEES
T ss_pred CeEEEEEC-CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE--------CCeEEEEecCcccccCCCcEEe
Confidence 44443333 689999999988766543222222222211123333321 13577788777 665554
No 236
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=44.22 E-value=2.2e+02 Score=27.14 Aligned_cols=107 Identities=9% Similarity=-0.014 Sum_probs=61.4
Q ss_pred cCCEEEEEc-CC-ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 112 HSTLLYTLS-PS-KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 112 ~~~~l~~~g-g~-~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.++.||... |. ..+.+.+.....-+.+..-.. ..-.++++- +.+||++-. ....|++++.....=+.+.
T Consensus 524 ~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~------~~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 524 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE
T ss_pred CCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC-CCceEEEEecCCCeEEEEeC------CCCcEEEEecCCCceEEEe
Confidence 357888765 43 678888776544433321110 111134433 578888853 2356888887644322221
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.....+. ... ++++.++.||+.....+.|..+|..+++
T Consensus 597 ~~~~~l~-~P~----glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 597 EDEKRLA-HPF----SLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp ECTTTTS-SEE----EEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCccC-CCC----EEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 1101011 112 7788899999999888899999876553
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=43.97 E-value=1.2e+02 Score=24.22 Aligned_cols=92 Identities=11% Similarity=0.211 Sum_probs=47.1
Q ss_pred CCEEEEEcCCceeeeecCC-CCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCC
Q 040781 113 STLLYTLSPSKLSFSFDPL-HLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQS 188 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~-t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~ 188 (316)
++.+++....+.++.+|+. ...|..-.+.. . ....+.. ++.+++.. ....+..||.. ++ |+.-..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~-~--~~~~~~~~~g~l~vgt-------~~~~l~~~d~~-g~~~~~~~~~ 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKA-I--YATPIVSEDGTIYVGS-------NDNYLYAINPD-GTEKWRFKTN 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSC-C--CSCCEECTTSCEEEEC-------TTSEEEEECTT-SCEEEEEECS
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCc-e--eeeeEEcCCCEEEEEc-------CCCEEEEECCC-CCEeEEEecC
Confidence 6777776545688999987 22344322111 1 1112223 45555532 12457778877 33 554321
Q ss_pred CCcccccCccccceeEEE-eCCEEEEEecccceEEEeeCC
Q 040781 189 MPAVLKDSAASTWLSVAV-NSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~i~~yD~~ 227 (316)
. .. .. +.+. .++.+|+.. +.|..||..
T Consensus 176 --~--~~-~~----~~~~d~~g~l~v~t---~~l~~~d~~ 203 (330)
T 3hxj_A 176 --D--AI-TS----AASIGKDGTIYFGS---DKVYAINPD 203 (330)
T ss_dssp --S--CC-CS----CCEECTTCCEEEES---SSEEEECTT
T ss_pred --C--Cc-ee----eeEEcCCCEEEEEe---CEEEEECCC
Confidence 1 11 11 2333 367777766 567889943
No 238
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=43.57 E-value=68 Score=27.98 Aligned_cols=114 Identities=13% Similarity=0.021 Sum_probs=60.9
Q ss_pred ecCCEEEEEcC-C----ceeeeecCCCCcee-ecCCCCCCCCCCEEEEE--CCEEEEEcCc-CC--CCCCCcEEEEEeCC
Q 040781 111 SHSTLLYTLSP-S----KLSFSFDPLHLAWH-HVDAPRVWRTDPVVALV--GDKVVVAGGA-CD--FEDDPLAVEMYSVD 179 (316)
Q Consensus 111 s~~~~l~~~gg-~----~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~--~~~v~~~gg~-~~--~~~~~~~v~vy~~~ 179 (316)
..+..+|+... . +.+.++|+.|++-. .+|--.. +.+++. +.++|+.... .. .+.....+.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~----Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL----PHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS----CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC----CceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 35677888763 2 68999999998753 3432111 134332 3467766411 00 00012468999999
Q ss_pred CCCeeecCCCC--ccc--ccCccccceeEEEeCCEEEEEecc-cceEEEeeCCCCC
Q 040781 180 TRTWEICQSMP--AVL--KDSAASTWLSVAVNSRQLYVTEKY-SGITVSFDPSTKG 230 (316)
Q Consensus 180 t~~W~~~~~~p--~~~--~~~~~~~~~~~~~~~~~~y~~~~~-~~~i~~yD~~~~~ 230 (316)
+++=..--.++ ..+ ..... .+.+.-.|..+|+.... .+.|.++|+.+.+
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~--~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQW--MNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGG--GSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred CCcEEEEEECCCccccccCCCcc--eEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 87643211121 000 00111 01222246788987643 5688999998876
No 239
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=42.54 E-value=2e+02 Score=26.29 Aligned_cols=99 Identities=6% Similarity=-0.080 Sum_probs=50.0
Q ss_pred ceeeeecCCCC-ceeecCCCCCCC-C--CCEEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccccc
Q 040781 123 KLSFSFDPLHL-AWHHVDAPRVWR-T--DPVVALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKD 195 (316)
Q Consensus 123 ~~~~v~np~t~-~w~~lp~~~~~~-~--~~~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~ 195 (316)
..+++||+.++ ..+.+....... . ...++.. +++++..+..+ ....+..++..++..+.+..-.. ..
T Consensus 284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~~~~~~~~l~~~~~--~v 357 (706)
T 2z3z_A 284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD----GWNHLYLYDTTGRLIRQVTKGEW--EV 357 (706)
T ss_dssp EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT----SSCEEEEEETTSCEEEECCCSSS--CE
T ss_pred eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC----CccEEEEEECCCCEEEecCCCCe--EE
Confidence 48899999998 665553111110 0 0112222 55655554322 23556777766655555532111 11
Q ss_pred CccccceeEEE--eCCEEEEEecccc----eEEEeeCCCCCcc
Q 040781 196 SAASTWLSVAV--NSRQLYVTEKYSG----ITVSFDPSTKGWS 232 (316)
Q Consensus 196 ~~~~~~~~~~~--~~~~~y~~~~~~~----~i~~yD~~~~~W~ 232 (316)
.. .+++ .+..+|+.+...+ .|+.+|+.++...
T Consensus 358 ~~-----~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 395 (706)
T 2z3z_A 358 TN-----FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK 395 (706)
T ss_dssp EE-----EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE
T ss_pred Ee-----eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce
Confidence 00 0222 3556777765433 6888898876633
No 240
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=42.12 E-value=1.6e+02 Score=24.87 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=39.0
Q ss_pred CCEEEEEcCcCC---CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CC-EEEEEecccceEEEeeCC
Q 040781 154 GDKVVVAGGACD---FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SR-QLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 154 ~~~v~~~gg~~~---~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~-~~y~~~~~~~~i~~yD~~ 227 (316)
+.++|+...... .......+.++|..+++= +..++. ..... ++.+. +. .+|+.....+.|.++|..
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~--g~~p~----~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISL--GHDVD----AISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEEC--CCCcC----eEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 467888653211 111345799999887653 222222 11112 34444 45 567766456789999998
Q ss_pred CCC
Q 040781 228 TKG 230 (316)
Q Consensus 228 ~~~ 230 (316)
+.+
T Consensus 350 t~~ 352 (373)
T 2mad_H 350 AGD 352 (373)
T ss_pred CCC
Confidence 766
No 241
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=41.57 E-value=1.6e+02 Score=25.00 Aligned_cols=126 Identities=8% Similarity=-0.006 Sum_probs=69.2
Q ss_pred CCEEEEEc-CCceeeeecCCCCceeecCC--CCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWHHVDA--PRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC- 186 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~--~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~- 186 (316)
++.||... +.+.+.++|+..+....+-. +..| .++++. +..+|..-.. ....++.++.....=+.+
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~-----~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS-----SSCCEEEEETTSCSCEEEE
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC-----CCCEEEEEeCCCCccEEEE
Confidence 46777765 45678888887655444321 1111 134442 5677776411 113477777654322222
Q ss_pred C-CCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCCc----CCCCCcccceeeeeeEeeCCEEE
Q 040781 187 Q-SMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPFH----LRQFDHEKKVFYSVITFANDRLI 259 (316)
Q Consensus 187 ~-~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~~----l~~~~~~~~~~~~~l~~~~g~L~ 259 (316)
. .+ .... ++++. ++.+|+.....+.|.++|+....-+.+.. ++.| ..+...+++||
T Consensus 242 ~~~l-----~~P~----glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P--------~gl~v~~~~ly 304 (400)
T 3p5b_L 242 TENI-----QWPN----GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP--------FSLAVFEDKVF 304 (400)
T ss_dssp CSSC-----SCEE----EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSE--------EEEEEETTEEE
T ss_pred ECCC-----CceE----EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCC--------EEEEEeCCEEE
Confidence 1 11 1112 67776 78999999888899999987544222221 1222 23344677888
Q ss_pred EEec
Q 040781 260 AVGL 263 (316)
Q Consensus 260 v~g~ 263 (316)
+...
T Consensus 305 wtd~ 308 (400)
T 3p5b_L 305 WTDI 308 (400)
T ss_dssp EEES
T ss_pred EecC
Confidence 8763
No 242
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=39.65 E-value=1.6e+02 Score=24.17 Aligned_cols=154 Identities=13% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeee-cCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCC
Q 040781 90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSF-DPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFE 167 (316)
Q Consensus 90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~-np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~ 167 (316)
..+|..+.. +.......+.....+.+++.+..+.++.- |..-..|..+.... ......++. -+.++++++..
T Consensus 151 G~tW~~~~~-~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~-~~~~~~~~~~~~g~~~~~~~~---- 224 (327)
T 2xbg_A 151 GKNWQALVQ-EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTT-SRRLHNMGFTPDGRLWMIVNG---- 224 (327)
T ss_dssp TSSEEEEEC-SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCS-SSCEEEEEECTTSCEEEEETT----
T ss_pred CCCCEEeec-CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCC-CCccceeEECCCCCEEEEeCC----
Confidence 347887743 33211111222234555666544445544 33346788774322 222222322 23566766521
Q ss_pred CCCcEEEEEeCC-CCCeeecC-C-CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcC-CCCCc
Q 040781 168 DDPLAVEMYSVD-TRTWEICQ-S-MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHL-RQFDH 242 (316)
Q Consensus 168 ~~~~~v~vy~~~-t~~W~~~~-~-~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l-~~~~~ 242 (316)
..+...+.. ..+|+.+. + ++. ... +..++.. ++.+|+.+.........| ...+|..+... +.+
T Consensus 225 ---G~~~~s~~D~G~tW~~~~~~~~~~--~~~----~~~v~~~~~~~~~~~g~~g~i~~S~D-gG~tW~~~~~~~~~~-- 292 (327)
T 2xbg_A 225 ---GKIAFSDPDNSENWGELLSPLRRN--SVG----FLDLAYRTPNEVWLAGGAGALLCSQD-GGQTWQQDVDVKKVP-- 292 (327)
T ss_dssp ---TEEEEEETTEEEEECCCBCTTSSC--CSC----EEEEEESSSSCEEEEESTTCEEEESS-TTSSCEECGGGTTSS--
T ss_pred ---ceEEEecCCCCCeeEeccCCcccC--Ccc----eEEEEecCCCEEEEEeCCCeEEEeCC-CCcccEEcCccCCCC--
Confidence 123333222 45798774 2 322 111 1134333 577888876433334445 34789876632 222
Q ss_pred ccceeeeeeEeeCCEEEEEec
Q 040781 243 EKKVFYSVITFANDRLIAVGL 263 (316)
Q Consensus 243 ~~~~~~~~l~~~~g~L~v~g~ 263 (316)
..+. ......+++++++|.
T Consensus 293 -~~~~-~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 293 -SNFY-KILFFSPDQGFILGQ 311 (327)
T ss_dssp -SCCC-EEEEEETTEEEEECS
T ss_pred -CCeE-EEEEECCCceEEEcC
Confidence 1222 222234677777774
No 243
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=39.48 E-value=1.6e+02 Score=24.39 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=60.0
Q ss_pred cCCEEEEEc-CCceeeeecCCCCceeecCC--CCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDA--PRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~--~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
.++.||... +.+.+.++++..+.-..+.. +..+ .++++. +..+|..... ....++.++.....=+.+
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~ 197 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG-----NTPRIEASSMDGSGRRII 197 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCSCEES
T ss_pred CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccC-----CCCEEEEEeCCCCCcEEE
Confidence 357777765 45788888886554333321 1111 134443 5677776421 125688888765433333
Q ss_pred CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCC
Q 040781 187 QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
..- . ..... ++++. ++.+|+.....+.|.++|+...
T Consensus 198 ~~~-~--~~~Pn----Gla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 198 ADT-H--LFWPN----GLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp CCS-S--CSCEE----EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEC-C--CCCcc----eEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 111 0 11112 67775 7899999988889999998754
No 244
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=38.84 E-value=1.6e+02 Score=24.22 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred eecCCEEEEEc-CCceeeeecCC-CCceeecCCCCCC--CCCCEEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCC--C
Q 040781 110 SSHSTLLYTLS-PSKLSFSFDPL-HLAWHHVDAPRVW--RTDPVVALV---GDKVVVAGGACDFEDDPLAVEMYSVD--T 180 (316)
Q Consensus 110 ~s~~~~l~~~g-g~~~~~v~np~-t~~w~~lp~~~~~--~~~~~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~--t 180 (316)
+..|..+|+.. +.+.+.+||.. +++...+.....+ ...+....+ +..+|+... ....+.+|+.. +
T Consensus 153 spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~------~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 153 DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME------AGNRICEYVIDPAT 226 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEEECTTT
T ss_pred CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC------CCCeEEEEEEeCCC
Q ss_pred CC----eeecCCCCcccccCc-------ccccee-EEEeCCEEEEEecccc-----eEEEeeCC-CCCccCCCc-CCCCC
Q 040781 181 RT----WEICQSMPAVLKDSA-------ASTWLS-VAVNSRQLYVTEKYSG-----ITVSFDPS-TKGWSGPFH-LRQFD 241 (316)
Q Consensus 181 ~~----W~~~~~~p~~~~~~~-------~~~~~~-~~~~~~~~y~~~~~~~-----~i~~yD~~-~~~W~~~~~-l~~~~ 241 (316)
++ ...+..+|....... ...-.. +.-+|..+|+.....+ .|.+||+. +++...+.. .+..
T Consensus 227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~- 305 (365)
T 1jof_A 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP- 305 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-
T ss_pred CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-
Q ss_pred cccceeeeeeEee----CCEEEEEecCCCCCCcceeeEEEee
Q 040781 242 HEKKVFYSVITFA----NDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 242 ~~~~~~~~~l~~~----~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
..........- ++.|++.+..... +.||.++
T Consensus 306 --~~~~~~~a~sp~~~dg~~l~v~~~~~~~-----v~v~~~~ 340 (365)
T 1jof_A 306 --TSGGHSNAVSPCPWSDEWMAITDDQEGW-----LEIYRWK 340 (365)
T ss_dssp --SCCTTCCCEEECTTCTTEEEEECSSSCE-----EEEEEEE
T ss_pred --CCCcccceecCCCcCCCEEEEEEcCCCe-----EEEEEEc
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=38.27 E-value=1.3e+02 Score=27.38 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccCCCcCCCCCcccce
Q 040781 171 LAVEMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSGPFHLRQFDHEKKV 246 (316)
Q Consensus 171 ~~v~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~~~~l~~~~~~~~~ 246 (316)
..+..+|..|++ |+.-...|. ... .++..++.+|+ +...+.+.+||.++.+ |+.- ++.. .
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~----~~g----~~~tagglvf~-g~~dg~l~A~D~~tG~~lW~~~--~~~g-----~ 529 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPL----WAG----VLATAGNLVFT-GTGDGYFKAFDAKSGKELWKFQ--TGSG-----I 529 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC----CSC----CEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEE--CSSC-----C
T ss_pred ceEEEEECCCCCEEEEecCCCCC----ccc----ceEeCCCEEEE-ECCCCcEEEEECCCCCEEEEec--CCCC-----c
Confidence 457788988875 886533222 112 34455788888 5566789999998776 5421 2222 1
Q ss_pred eeeeeE-eeCCEEEEEec
Q 040781 247 FYSVIT-FANDRLIAVGL 263 (316)
Q Consensus 247 ~~~~l~-~~~g~L~v~g~ 263 (316)
....+. ..+|++|++..
T Consensus 530 ~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 530 VSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred ccCceEEEECCEEEEEEE
Confidence 111222 36888888743
No 246
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=37.35 E-value=67 Score=27.04 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=53.3
Q ss_pred CCEEEEEcCCceeeeecCCCCc--eee-cC---CCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 113 STLLYTLSPSKLSFSFDPLHLA--WHH-VD---APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~--w~~-lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
++++|+.+..+.++.+|..|++ |+. .. |+-..+. ... ..++.++++.... ...+..|+..++.|+.-
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~~-~~~~~~~vv~p~~-----dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PSR-LETYETLIIEPFG-----DGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SCT-TTSSEEEEECCST-----TTEEEEEETTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-Ccc-ccCCcEEEEEECC-----CCEEEEEECCCCcEEee
Confidence 3677777666789999988875 653 21 1111110 000 0134566554221 23477788887776532
Q ss_pred CCCCcccccCccccc-eeEEE-------eCCEEEEEecccceEEEeeCCCCC
Q 040781 187 QSMPAVLKDSAASTW-LSVAV-------NSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 187 ~~~p~~~~~~~~~~~-~~~~~-------~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
..+|. .....+... ...++ .++.+|+.. ..+.+.++|..+++
T Consensus 83 ~~~~~-lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs-~~g~l~ald~~tG~ 132 (339)
T 2be1_A 83 LSIRQ-LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGS-MRTIMYTINMLNGE 132 (339)
T ss_dssp EEHHH-HHTTCSEEEECC----------CCEEEEECE-EEEEEEEEETTTCC
T ss_pred ecccc-ceeccccccCCCceeecccccccCCEEEEEe-cCCEEEEEECCCCc
Confidence 22221 000100000 01222 456666644 45577888888775
No 247
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=36.82 E-value=2.2e+02 Score=25.04 Aligned_cols=100 Identities=9% Similarity=0.041 Sum_probs=47.9
Q ss_pred CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV 192 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~ 192 (316)
..+...+..+.+.+||..++....+...... -..++.. +++.++.|+. ...+.+||.....-..+...
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~------dg~v~~~~~~~~~~~~~~~~--- 384 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSS--VWGVAFSPDGQTIASASD------DKTVKLWNRNGQLLQTLTGH--- 384 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCSSC--EEEEEECTTSSEEEEEET------TSEEEEEETTCCEEEEEECC---
T ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCC--EEEEEECCCCCEEEEEeC------CCEEEEEcCCCCEEEEecCC---
Confidence 3433333446788999776655554321111 0122222 3445555542 24577887543322222111
Q ss_pred cccCccccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781 193 LKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 193 ~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
..... ++++. ++.+.+.++..+.|..||...+
T Consensus 385 -~~~v~----~~~~s~dg~~l~~~~~d~~v~~~~~~~~ 417 (577)
T 2ymu_A 385 -SSSVR----GVAFSPDGQTIASASDDKTVKLWNRNGQ 417 (577)
T ss_dssp -SSCEE----EEEECTTSSCEEEEETTSEEEEECTTCC
T ss_pred -CCCeE----EEEECCCCCEEEEEeCCCEEEEEeCCCC
Confidence 01111 33333 4555566666678888986543
No 248
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=36.47 E-value=1.8e+02 Score=23.88 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=61.3
Q ss_pred cCCEEEEEc-C-CceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 112 HSTLLYTLS-P-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 112 ~~~~l~~~g-g-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.+|.||... + ...++++++.-..-..+-... ...-.++++- +.++|+.-. ....++.+|.....=+.+.
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-l~~Pnglavd~~~~~lY~aD~------~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-IYWPNGLTLDYEEQKLYWADA------KLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC-CCCccEEEEeccCCEEEEEEC------CCCEEEEEcCCCCceEEEe
Confidence 357778765 3 467888887543322221111 0111144443 578888753 3356888887653323332
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
.- . ..... ++++.++.+|+.....+.|..+|+.+++
T Consensus 205 ~~-~--~~~P~----glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 205 KG-S--LPHPF----ALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp CS-C--CSCEE----EEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cC-C--CCCce----EEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 10 0 11112 7888899999998877899999997655
No 249
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=35.01 E-value=1.9e+02 Score=23.73 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=57.9
Q ss_pred CCEEEEEc-CCceeeeecCCCCcee-ecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAWH-HVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~ 188 (316)
.+.||... ..+.++.+++..+.-. .+.. .....-.++++ .+..+|..-. ....+++++.....=+.+..
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~~l~~p~glavd~~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~ 118 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVV-SGLLSPDGLACDWLGEKLYWTDS------ETNRIEVSNLDGSLRKVLFW 118 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTSSSCCCEEEE-ECCSCCCEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCceEEEEc-CCCCCccEEEEEcCCCeEEEEEC------CCCEEEEEECCCCcEEEEEe
Confidence 47888876 4578889988765321 1111 01111224444 3678888753 23568888876543222211
Q ss_pred CCcccccCccccceeEEEe--CCEEEEEec-ccceEEEeeCCCC
Q 040781 189 MPAVLKDSAASTWLSVAVN--SRQLYVTEK-YSGITVSFDPSTK 229 (316)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~-~~~~i~~yD~~~~ 229 (316)
- . ..... ++++. ++.+|+... ..+.|..+|+...
T Consensus 119 ~-~--~~~P~----giavdp~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 119 Q-E--LDQPR----AIALDPSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp S-S--CSSEE----EEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred C-C--CCCcc----EEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 0 0 11112 66675 689999873 3568999998754
No 250
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=34.82 E-value=2.7e+02 Score=25.55 Aligned_cols=64 Identities=8% Similarity=-0.112 Sum_probs=33.6
Q ss_pred CCEEEEEcCCceeeeecCCCC---ceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781 113 STLLYTLSPSKLSFSFDPLHL---AWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~---~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~ 186 (316)
|..|+..+. +.+++||..++ +...+...... ...++.. +++.++++. ...+.++|..+++...+
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~--~~~~~~SPDG~~la~~~-------~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGF--ATDAKLSPKGGFVSFIR-------GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSC--EEEEEECTTSSEEEEEE-------TTEEEEEETTTTEEEEC
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcc--cccccCCCCCCEEEEEe-------CCcEEEEecCCCCEEEe
Confidence 344444433 78999999888 65555322111 1111111 233333332 12588888888776655
No 251
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=34.78 E-value=2.7e+02 Score=25.55 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=55.2
Q ss_pred cCCEEEEEcC----CceeeeecCCCCc---eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781 112 HSTLLYTLSP----SKLSFSFDPLHLA---WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184 (316)
Q Consensus 112 ~~~~l~~~gg----~~~~~v~np~t~~---w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~ 184 (316)
.|+ +|+.+. ...++++|..+++ |+.+-+.........+...+.++++....+ ....+.+++.....-+
T Consensus 281 ~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d----g~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 281 KDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD----ATSEVRVATLKGKPVR 355 (695)
T ss_dssp TTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEET----TEEEEEEEETTCCEEE
T ss_pred CCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEEC----CEEEEEEEeCCCCeeE
Confidence 455 666543 3689999987765 776632211111123344577777765322 2356777876543333
Q ss_pred ecCCCCcccccCccccceeEEE--eCCEEEEEec---ccceEEEeeCCCCCccCC
Q 040781 185 ICQSMPAVLKDSAASTWLSVAV--NSRQLYVTEK---YSGITVSFDPSTKGWSGP 234 (316)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~~~~~--~~~~~y~~~~---~~~~i~~yD~~~~~W~~~ 234 (316)
.+. .+. ..... ++.. .+..+++... ..+.|+.||+.+++...+
T Consensus 356 ~l~-~~~--~~~v~----~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 356 TVQ-LPG--VGAAS----NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp ECC-CSS--SSEEC----CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred Eec-CCC--CeEEE----EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 332 221 00000 1111 2344544332 235788999988765433
No 252
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=31.47 E-value=2e+02 Score=22.93 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=58.1
Q ss_pred eEEeeCC-CCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEE-ECCEEE
Q 040781 83 AHAYDAR-SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVAL-VGDKVV 158 (316)
Q Consensus 83 ~~~~d~~-~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~-~~~~v~ 158 (316)
++.||+. ...|..-. +. .....+.....+.+++.+..+.++.+|+. ++ |..- .+.... ..+.. .++.++
T Consensus 119 l~~~d~~g~~~~~~~~--~~-~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~--~~~~~~-~~~~~d~~g~l~ 191 (330)
T 3hxj_A 119 LYAINTDGTEKWRFKT--KK-AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK--TNDAIT-SAASIGKDGTIY 191 (330)
T ss_dssp EEEECTTSCEEEEEEC--SS-CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE--CSSCCC-SCCEECTTCCEE
T ss_pred EEEEcCCCCEEEEEcC--CC-ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe--cCCCce-eeeEEcCCCEEE
Confidence 6678876 22454331 21 11112222335666665544789999998 54 4322 111111 11222 245566
Q ss_pred EEcCcCCCCCCCcEEEEEeCC-CCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781 159 VAGGACDFEDDPLAVEMYSVD-TRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 159 ~~gg~~~~~~~~~~v~vy~~~-t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+.. ..+..||.. ...|+....... .. +++.. ++.+|+... .+.|.+||...+.
T Consensus 192 v~t---------~~l~~~d~~g~~~~~~~~~~~~-----~~----~~~~~~~g~l~v~t~-~~gl~~~~~~g~~ 246 (330)
T 3hxj_A 192 FGS---------DKVYAINPDGTEKWNFYAGYWT-----VT----RPAISEDGTIYVTSL-DGHLYAINPDGTE 246 (330)
T ss_dssp EES---------SSEEEECTTSCEEEEECCSSCC-----CS----CCEECTTSCEEEEET-TTEEEEECTTSCE
T ss_pred EEe---------CEEEEECCCCcEEEEEccCCcc-----ee----ceEECCCCeEEEEcC-CCeEEEECCCCCE
Confidence 543 236677732 224665421111 11 23334 457887653 3467888875544
No 253
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=29.49 E-value=3.3e+02 Score=24.89 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=56.8
Q ss_pred cCCEEEEEc-CCceeeeecCCCCc-eeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 112 HSTLLYTLS-PSKLSFSFDPLHLA-WHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 112 ~~~~l~~~g-g~~~~~v~np~t~~-w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.++.||... +.+.+.++++.... ...+-... ...-.++++ .+.++|+... ....+++++.....=+.+.
T Consensus 50 ~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-~~~P~GlAvD~~~~~ly~~d~------~~~~I~v~~~dG~~~~~l~ 122 (619)
T 3s94_A 50 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDS------ETNRIEVSNLDGSLRKVLF 122 (619)
T ss_dssp TTTEEEEEETTTTEEEEEEC-----CEEEECSS-CSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE
T ss_pred CCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-CCCcCeEEEEecCCEEEEEeC------CCCEEEEEECCCCCEEEEE
Confidence 468888876 45678888876542 22221111 011124444 3678888753 2356888888754322221
Q ss_pred --CCCcccccCccccceeEEEe--CCEEEEEec-ccceEEEeeCCCCC
Q 040781 188 --SMPAVLKDSAASTWLSVAVN--SRQLYVTEK-YSGITVSFDPSTKG 230 (316)
Q Consensus 188 --~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~-~~~~i~~yD~~~~~ 230 (316)
.+. ... +++++ +|.+|+..- ....|...+++...
T Consensus 123 ~~~l~-----~P~----~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 123 WQELD-----QPR----AIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp CSSCS-----CCC----CEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred eCCCC-----CCc----eEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 221 112 67774 689999873 34578999887544
No 254
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=29.24 E-value=2.5e+02 Score=23.47 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=20.1
Q ss_pred eEEEeC-C-EEEEEecccceEEEeeCCCCC
Q 040781 203 SVAVNS-R-QLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~~-~-~~y~~~~~~~~i~~yD~~~~~ 230 (316)
++++.. + .+.+.++..+.|..||+.+..
T Consensus 231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 444442 3 677777777889999998776
No 255
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=29.04 E-value=3.2e+02 Score=24.62 Aligned_cols=137 Identities=7% Similarity=-0.067 Sum_probs=66.9
Q ss_pred ceeeeecCC-CC---ceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccc---
Q 040781 123 KLSFSFDPL-HL---AWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLK--- 194 (316)
Q Consensus 123 ~~~~v~np~-t~---~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~--- 194 (316)
..++++|.. ++ +...+..-. .......... +++++..+... ....+.++|..+++++.+........
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRT----GWWNLHRVDPATGAATQLCRREEEFAGPL 291 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTT----SSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred cEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCC----CCeEEEEEECCCCceeecccccccccCcc
Confidence 579999988 56 444442110 0111122222 45666555322 12468888888888888744322111
Q ss_pred --cCccccceeEEEe-CCEEEEEecc-cceEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEecCCCCCC
Q 040781 195 --DSAASTWLSVAVN-SRQLYVTEKY-SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVGLTGEAED 269 (316)
Q Consensus 195 --~~~~~~~~~~~~~-~~~~y~~~~~-~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g~~~~~~~ 269 (316)
.... .+++. ++.+++.... ...|+.+|+.++....+. .+. ... ..+ ...+++++++.....
T Consensus 292 w~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~--~~~--~~~~s~~~~~~~~~~~~~~--- 357 (662)
T 3azo_A 292 WTPGMR----WFAPLANGLIAVVHGKGAAVLGILDPESGELVDAA---GPW--TEW--AATLTVSGTRAVGVAASPR--- 357 (662)
T ss_dssp CSTTCC----SEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECC---SSC--CEE--EEEEEEETTEEEEEEEETT---
T ss_pred ccccCc----eEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEec---CCC--CeE--EEEEecCCCEEEEEEcCCC---
Confidence 0011 23343 5666665543 224666788776644333 220 111 122 334667766654322
Q ss_pred cceeeEEEee
Q 040781 270 VKSLKIWQVN 279 (316)
Q Consensus 270 ~~~~~iw~l~ 279 (316)
....||.++
T Consensus 358 -~~~~i~~~d 366 (662)
T 3azo_A 358 -TAYEVVELD 366 (662)
T ss_dssp -EEEEEEEEE
T ss_pred -CCCEEEEEE
Confidence 125566665
No 256
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=28.45 E-value=3e+02 Score=24.41 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=49.1
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW 201 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~ 201 (316)
..++++|..+++.+.+....... ...+.. +++.++.+... ....+.++|..+++.+.+...............
T Consensus 175 ~~i~~~d~~~g~~~~l~~~~~~~--~~~~~SpDG~~l~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 175 VSLFTSNLSSGGLRVFDSGEGSF--SSASISPGMKVTAGLETA----REARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp EEEEEEETTTCCCEEECCSSCEE--EEEEECTTSCEEEEEECS----SCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred eEEEEEcCCCCCceEeecCCCcc--ccceECCCCCEEEEccCC----CeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 57999999999988774322111 112222 33333332211 224688999999887732222110000000000
Q ss_pred eeE-EEeCCEEEEEecccceEEEeeC
Q 040781 202 LSV-AVNSRQLYVTEKYSGITVSFDP 226 (316)
Q Consensus 202 ~~~-~~~~~~~y~~~~~~~~i~~yD~ 226 (316)
... ..-+|.+++.+...+.+..|++
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 000 1234577777766667788888
No 257
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=27.07 E-value=3.7e+02 Score=24.64 Aligned_cols=26 Identities=4% Similarity=-0.021 Sum_probs=17.2
Q ss_pred CCEEEEEcCCceeeeecCCCCceeecC
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAWHHVD 139 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w~~lp 139 (316)
|..|.... .+.++++|..+++...+.
T Consensus 163 G~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 163 GGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred CCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 34443333 358999999998877664
No 258
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=26.66 E-value=3.7e+02 Score=24.60 Aligned_cols=96 Identities=11% Similarity=-0.055 Sum_probs=50.9
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC---eeecCCCCcccccCccc
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT---WEICQSMPAVLKDSAAS 199 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~---W~~~~~~p~~~~~~~~~ 199 (316)
..++++|..+++++.+...... .......++++++.... + .....+.++|..+.. |+.+.+-.. .....
T Consensus 252 ~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~g~l~~~s~~-~--~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~- 323 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKGVGA--KYEVHAWKDRFYVLTDE-G--APRQRVFEVDPAKPARASWKEIVPEDS--SASLL- 323 (695)
T ss_dssp EEEEEECTTCSSCEEEEECSSC--CEEEEEETTEEEEEECT-T--CTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEE-
T ss_pred eEEEEEcCCCCceEEeecCCCc--eEEEEecCCcEEEEECC-C--CCCCEEEEEeCCCCCccCCeEEecCCC--CCeEE-
Confidence 4778888777778777432211 11222245555444321 1 134568888887655 877632211 01111
Q ss_pred cceeEEEeCCEEEEEeccc--ceEEEeeCCCC
Q 040781 200 TWLSVAVNSRQLYVTEKYS--GITVSFDPSTK 229 (316)
Q Consensus 200 ~~~~~~~~~~~~y~~~~~~--~~i~~yD~~~~ 229 (316)
++...++.+++..... ..|..+|+..+
T Consensus 324 ---~~~~~~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 324 ---SVSIVGGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp ---EEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred ---EEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence 4455578877765432 35677887544
No 259
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=26.62 E-value=2.6e+02 Score=22.84 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=36.9
Q ss_pred eEEEe-CCEEEEEecccce-EEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 203 SVAVN-SRQLYVTEKYSGI-TVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~~~~-i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
++++. ++.+.+.++..+. |..||+.+.+- +..+.......... +....-+|++++.++... .+.||.++
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~--~~~~~~g~h~~~v~-~~~~s~~~~~l~s~s~d~-----~v~iw~~~ 270 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGVL--VREFRRGLDRADVV-DMKWSTDGSKLAVVSDKW-----TLHVFEIF 270 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTTCCE--EEEEECTTCCSCEE-EEEECTTSCEEEEEETTC-----EEEEEESS
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEEcCCCCCcEE-EEEECCCCCEEEEEECCC-----EEEEEEcc
Confidence 34444 5666777777776 99999987652 12122100001111 111233566666665433 49999997
No 260
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=26.40 E-value=1.6e+02 Score=24.12 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=21.2
Q ss_pred eEEEe-CCEEEEEecc-----cceEEEeeCCCCC
Q 040781 203 SVAVN-SRQLYVTEKY-----SGITVSFDPSTKG 230 (316)
Q Consensus 203 ~~~~~-~~~~y~~~~~-----~~~i~~yD~~~~~ 230 (316)
++++. ++.+|+++.. ...|+.||+.+++
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~ 104 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ 104 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe
Confidence 56666 4889998743 3579999998776
No 261
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=25.84 E-value=3.7e+02 Score=24.24 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=47.4
Q ss_pred ceEEeeCCCCcee-EccCCCCCCccceee-eecCCEEEEEcCCceeeeecCC--CCce-eecCCCCCCCCCCEEEEE---
Q 040781 82 TAHAYDARSHVWI-EIKNNQPSSFDFLLR-SSHSTLLYTLSPSKLSFSFDPL--HLAW-HHVDAPRVWRTDPVVALV--- 153 (316)
Q Consensus 82 ~~~~~d~~~~~w~-~~~~~~~~~~~~~~~-~s~~~~l~~~gg~~~~~v~np~--t~~w-~~lp~~~~~~~~~~~~~~--- 153 (316)
.+..+|...++-. .++. ...++ .+. +..|..+|+.+..+.+.++|+. |++- .+++.-..++ .+++.
T Consensus 178 ~V~viD~~t~~v~~~i~~-g~~p~--~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~---~ia~s~~~ 251 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDT-GYAVH--ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR---SIETSKME 251 (567)
T ss_dssp EEEEEETTTCCEEEEEEC-SSCEE--EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE---EEEECCST
T ss_pred eEEEEECCCCeEEEEEeC-CCCcc--ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc---eeEEcccc
Confidence 4677898876544 3422 22112 233 3346788887766789999996 5432 2332211111 33444
Q ss_pred --CC-EEEEEcCcCCCCCCCcEEEEEeCCCCC
Q 040781 154 --GD-KVVVAGGACDFEDDPLAVEMYSVDTRT 182 (316)
Q Consensus 154 --~~-~v~~~gg~~~~~~~~~~v~vy~~~t~~ 182 (316)
++ .+|+... ....+.++|..+.+
T Consensus 252 ~pDGk~l~v~n~------~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 252 GWEDKYAIAGAY------WPPQYVIMDGETLE 277 (567)
T ss_dssp TCTTTEEEEEEE------ETTEEEEEETTTCC
T ss_pred CCCCCEEEEEEc------cCCeEEEEECCCCc
Confidence 33 5555542 22457788866643
No 262
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.03 E-value=46 Score=20.89 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=15.9
Q ss_pred CEEEEEcCCceeeeecCCCCc
Q 040781 114 TLLYTLSPSKLSFSFDPLHLA 134 (316)
Q Consensus 114 ~~l~~~gg~~~~~v~np~t~~ 134 (316)
.++.+..+.++.|.||+.|++
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~ 41 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRL 41 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTE
T ss_pred CcEEEECCCCCEEEecCcccc
Confidence 455555566799999999986
No 263
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=24.18 E-value=4.2e+02 Score=24.33 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=60.2
Q ss_pred eeecCCEEEEEcC----CceeeeecCCCC---ceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781 109 RSSHSTLLYTLSP----SKLSFSFDPLHL---AWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR 181 (316)
Q Consensus 109 ~~s~~~~l~~~gg----~~~~~v~np~t~---~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~ 181 (316)
....|+.+|+.+. ...++++|..++ .|+.+-+-... .. .+...+..+++....+ ....+.++|..++
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~-~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL-TVHSGSGYLFAEYMVD----ATARVEQFDYEGK 360 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE-EEEEETTEEEEEEEET----TEEEEEEECTTSC
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE-EEEEECCEEEEEEEEC----CeeEEEEEECCCC
Confidence 3445777777653 357888887764 36765322211 11 4555667766554221 2356888988765
Q ss_pred CeeecCCCCcccccCccccceeEEE--eCCEEEEEe-c--ccceEEEeeCCCCCccCCC
Q 040781 182 TWEICQSMPAVLKDSAASTWLSVAV--NSRQLYVTE-K--YSGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 182 ~W~~~~~~p~~~~~~~~~~~~~~~~--~~~~~y~~~-~--~~~~i~~yD~~~~~W~~~~ 235 (316)
..+.+. +|. ..... ++.. .+..+++.. + ....|+.||+.+++...+.
T Consensus 361 ~~~~l~-~p~--~~~~~----~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 RVREVA-LPG--LGSVS----GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EEEEEC-CSS--SSEEE----ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred eeEEee-cCC--CceEE----eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 544442 222 11100 1111 234454443 2 2357899999887755443
No 264
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=24.12 E-value=2e+02 Score=24.61 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=46.2
Q ss_pred CCEEEEEc-CcCCC-----C---CCCcEEEEEeCCCC--CeeecCCCCcccccCccccceeEEEe---------CCEEEE
Q 040781 154 GDKVVVAG-GACDF-----E---DDPLAVEMYSVDTR--TWEICQSMPAVLKDSAASTWLSVAVN---------SRQLYV 213 (316)
Q Consensus 154 ~~~v~~~g-g~~~~-----~---~~~~~v~vy~~~t~--~W~~~~~~p~~~~~~~~~~~~~~~~~---------~~~~y~ 213 (316)
.+++.++- |.... . .....+-+||+.|+ +=-..-.+|....... +.+-.++++ ++.+|+
T Consensus 97 ~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~-S~l~di~VD~~~~~~~c~~~~aYI 175 (381)
T 3q6k_A 97 CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKP-TYFGGFAVDVANPKGDCSETFVYI 175 (381)
T ss_dssp TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCG-GGEEEEEEEESCTTTTSCSEEEEE
T ss_pred CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccC-CccceEEEecccCCCCCCccEEEE
Confidence 36777774 43221 1 23456888999998 4322223333222211 122355666 567899
Q ss_pred EecccceEEEeeCCCCC-ccCC
Q 040781 214 TEKYSGITVSFDPSTKG-WSGP 234 (316)
Q Consensus 214 ~~~~~~~i~~yD~~~~~-W~~~ 234 (316)
.......|.+||..+++ |+..
T Consensus 176 tD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 176 TNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEEEEECCCCcEEEEc
Confidence 98766688999998764 6644
No 265
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=23.84 E-value=3e+02 Score=22.43 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=63.1
Q ss_pred CCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCC-CCC-CCCEEEEECCEEEEEcCcCCCC
Q 040781 90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPR-VWR-TDPVVALVGDKVVVAGGACDFE 167 (316)
Q Consensus 90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~-~~~-~~~~~~~~~~~v~~~gg~~~~~ 167 (316)
..+|..+.. +.......+.....+.+++.|..+.++.-+-.-+.|+.+.... ... ....+......++++|..
T Consensus 24 g~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~---- 98 (327)
T 2xbg_A 24 YNPWEAIQL-PTTATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP---- 98 (327)
T ss_dssp SCCEEEEEC-SCSSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET----
T ss_pred CCCceEeec-CCCCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC----
Confidence 457887743 3222112222223455666665445555444445798874321 111 112344445678877521
Q ss_pred CCCcEEEEEeCC--CCCeeecCCCCcccccCccccceeEE-EeCCEEEEEecccceEEEeeCCCCCccCCC
Q 040781 168 DDPLAVEMYSVD--TRTWEICQSMPAVLKDSAASTWLSVA-VNSRQLYVTEKYSGITVSFDPSTKGWSGPF 235 (316)
Q Consensus 168 ~~~~~v~vy~~~--t~~W~~~~~~p~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~ 235 (316)
. .+|-+. ..+|+.+..... .+... ..+. ..++.+|+.+.. +.|+.-+=.-++|+.+.
T Consensus 99 ---g--~i~~S~DgG~tW~~~~~~~~-~~~~~----~~i~~~~~~~~~~~~~~-g~v~~S~DgG~tW~~~~ 158 (327)
T 2xbg_A 99 ---P--IMLHTTDGGQSWSQIPLDPK-LPGSP----RLIKALGNGSAEMITNV-GAIYRTKDSGKNWQALV 158 (327)
T ss_dssp ---T--EEEEESSTTSSCEECCCCTT-CSSCE----EEEEEEETTEEEEEETT-CCEEEESSTTSSEEEEE
T ss_pred ---C--eEEEECCCCCCceECccccC-CCCCe----EEEEEECCCCEEEEeCC-ccEEEEcCCCCCCEEee
Confidence 1 233333 468999853211 01111 1333 356788887753 34444332456898776
No 266
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=23.82 E-value=3e+02 Score=22.50 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=51.7
Q ss_pred eecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781 110 SSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ 187 (316)
Q Consensus 110 ~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~ 187 (316)
.+..|.+++.|+.+.+.+||..+.+-....... ....+... ...+.++|+.+ ..+.++|..+++-...-
T Consensus 27 fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d------~~v~iWd~~~~~~~~~~ 97 (355)
T 3vu4_A 27 FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVAFVTGVK------EVVHIWDDVKKQDVSRI 97 (355)
T ss_dssp ECTTSSEEEEECSSEEEEEEETTEEEEEEEECS---CCCEEEECTTSSEEEEECSST------TEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEcCCEEEEEecCCcceeeeeecC---CeEEEEEcCCCCEEEEEECCc------cEEEEEECCCCcEEEEE
Confidence 334455556665566778886654332211111 11122221 23444556522 37899998877532211
Q ss_pred CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781 188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK 229 (316)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~ 229 (316)
.. ... ..++......+.+.. .+.|..||+.+.
T Consensus 98 ~~----~~~----v~~v~~~~~~~~~~~--~~~i~i~d~~~~ 129 (355)
T 3vu4_A 98 KV----DAP----VKDLFLSREFIVVSY--GDVISVFKFGNP 129 (355)
T ss_dssp EC----SSC----EEEEEECSSEEEEEE--TTEEEEEESSTT
T ss_pred EC----CCc----eEEEEEcCCEEEEEE--cCEEEEEECCCC
Confidence 11 111 125556666666554 347899999876
No 267
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=22.48 E-value=2.5e+02 Score=21.16 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=53.3
Q ss_pred CCEEEEEcCCceeeeecCCCCce-eecCC--CC--CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee--
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAW-HHVDA--PR--VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI-- 185 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w-~~lp~--~~--~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~-- 185 (316)
.+.+|++-| +.+++|+..+-.- +.|.. +| ....+.++....+++|.+-| .....||..+++=..
T Consensus 64 ~~~~yfFkG-~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gy 134 (195)
T 1itv_A 64 SKKLFFFSG-RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRS 134 (195)
T ss_dssp TCCEEEEET-TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGG
T ss_pred CCeEEEEeC-CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCC
Confidence 577777766 4788887543111 01111 11 11334444433578888866 346778876643211
Q ss_pred ---cC-CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 186 ---CQ-SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 186 ---~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
+. ..+. .+.... ++...++.+|++.|. ..+.||..+..
T Consensus 135 Pr~i~~~w~G-vp~~id----aa~~~~g~~Yffkg~--~y~~~~~~~~~ 176 (195)
T 1itv_A 135 ASEVDRMFPG-VPLDTH----DVFQFREKAYFCQDR--FYWRVSSRSEL 176 (195)
T ss_dssp CEEHHHHSTT-SCSSCS----EEEEETTEEEEEETT--EEEEEECCTTC
T ss_pred ccChhhcCCC-CCCCCC----EEEEeCCeEEEEeCC--EEEEEECCccE
Confidence 10 0100 011112 444456889998775 56889987665
No 268
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=22.45 E-value=2.6e+02 Score=21.34 Aligned_cols=101 Identities=11% Similarity=0.181 Sum_probs=53.6
Q ss_pred CCEEEEEcCCceeeeecCCCCce---eecCCCCCC----CCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781 113 STLLYTLSPSKLSFSFDPLHLAW---HHVDAPRVW----RTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184 (316)
Q Consensus 113 ~~~l~~~gg~~~~~v~np~t~~w---~~lp~~~~~----~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~ 184 (316)
.+.+|++-|. .+++++..+-.- +.|..+..+ ..++++... ++++|.+-| .....||..+++=.
T Consensus 79 ~~~iyfFkG~-~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d 149 (207)
T 1pex_A 79 HDLIFIFRGR-KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMD 149 (207)
T ss_dssp TTEEEEEETT-EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEEC
T ss_pred CCcEEEEccC-EEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCcccc
Confidence 5788887764 788886432111 122211111 233333222 378888876 44777887654311
Q ss_pred ecCCCCcc-------cccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781 185 ICQSMPAV-------LKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG 230 (316)
Q Consensus 185 ~~~~~p~~-------~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~ 230 (316)
...|.. .+.... ++...++.+|++.|. ..+.||..+++
T Consensus 150 --~gyPr~i~~~~~Gip~~iD----aAf~~~g~~YfFkg~--~y~rf~~~~~~ 194 (207)
T 1pex_A 150 --KDYPRLIEEDFPGIGDKVD----AVYEKNGYIYFFNGP--IQFEYSIWSNR 194 (207)
T ss_dssp --SSCCCBHHHHSTTSCSCCS----EEEEETTEEEEEETT--EEEEEETTTTE
T ss_pred --CCCCccHHHcCCCCCCCcc----EEEEcCCcEEEEECC--EEEEEeCCccE
Confidence 111110 011112 344468899998765 56889987655
No 269
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=22.32 E-value=4.7e+02 Score=24.20 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=68.0
Q ss_pred ceEEeeCCCC--c-eeEccCCCCCCccceeeeecCCEEEEEcC----CceeeeecCCC--CceeecCCCCCCCCCCEEEE
Q 040781 82 TAHAYDARSH--V-WIEIKNNQPSSFDFLLRSSHSTLLYTLSP----SKLSFSFDPLH--LAWHHVDAPRVWRTDPVVAL 152 (316)
Q Consensus 82 ~~~~~d~~~~--~-w~~~~~~~~~~~~~~~~~s~~~~l~~~gg----~~~~~v~np~t--~~w~~lp~~~~~~~~~~~~~ 152 (316)
.++.+|.... . +..+.. +. ..........|+.|++... ...++++|..+ +.|+.+-+-... ....+..
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~-~~-~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~ 371 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIP-DL-KAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGI 371 (741)
T ss_dssp EEEEEEEETTEECCCEEEEC-SS-SSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEE
T ss_pred eEEEEECCCCCCcccEEecC-CC-CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEE
Confidence 4555666554 4 655531 11 1111122345677777653 35699999887 468776322111 1112334
Q ss_pred ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEE--eCCEEEEE-ec--ccceEEEeeCC
Q 040781 153 VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAV--NSRQLYVT-EK--YSGITVSFDPS 227 (316)
Q Consensus 153 ~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~--~~~~~y~~-~~--~~~~i~~yD~~ 227 (316)
.+.++++....+ ....+.+++...+.-+.+. .|. ..... ++.. .+..+++. .+ ..+.|+.||+.
T Consensus 372 ~~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l~-~~~--~~~v~----~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 372 AGNRLFASYIHD----AKSQVLAFDLDGKPAGAVS-LPG--IGSAS----GLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EBTEEEEEEEET----TEEEEEEEETTSCEEEECB-CSS--SCEEE----EEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred ECCEEEEEEEEC----CEEEEEEEeCCCCceeecc-CCC--CeEEE----EeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 566766665322 2355777876443333322 221 11111 2222 23344443 32 33578999998
Q ss_pred CCCccCC
Q 040781 228 TKGWSGP 234 (316)
Q Consensus 228 ~~~W~~~ 234 (316)
+++...+
T Consensus 441 tg~~~~l 447 (741)
T 1yr2_A 441 TAKTTPW 447 (741)
T ss_dssp TTEEEEC
T ss_pred CCcEEEE
Confidence 8765444
No 270
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=22.30 E-value=2.7e+02 Score=22.75 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=41.6
Q ss_pred CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc--cc-cCccccceeEEEe--CCEEEEEec---ccceEEEee
Q 040781 154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV--LK-DSAASTWLSVAVN--SRQLYVTEK---YSGITVSFD 225 (316)
Q Consensus 154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~--~~-~~~~~~~~~~~~~--~~~~y~~~~---~~~~i~~yD 225 (316)
.+++|++..... ......+.+||+.+++-...-.++.. .. .... ++++. ++.+|+... ..+.|.+||
T Consensus 77 ~g~L~v~D~g~~-~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~----~v~vd~~~g~~yvtd~~~~~~~~i~v~d 151 (343)
T 2qe8_A 77 NGIVWMLDNGNQ-SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN----DLAVDLIHNFVYISDPAPDDKAALIRVD 151 (343)
T ss_dssp SSEEEEEECHHH-HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC----EEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred CCcEEEEcCCCC-cCCCCeEEEEECCCCeEEEEEECChhhcccccccc----eEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence 368888752100 00135688999998873222112110 01 1112 56676 689999976 567899999
Q ss_pred CCCCC
Q 040781 226 PSTKG 230 (316)
Q Consensus 226 ~~~~~ 230 (316)
+.+++
T Consensus 152 ~~~g~ 156 (343)
T 2qe8_A 152 LQTGL 156 (343)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 98654
No 271
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=22.09 E-value=4.6e+02 Score=24.03 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCCCceEEeeCCC------C--ceeEccCCCCCCccceeeeecCCEEEEEcCCce----eeeecCCCC
Q 040781 66 LLLHTQSQRTMAPYLTTAHAYDARS------H--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKL----SFSFDPLHL 133 (316)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~d~~~------~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~----~~v~np~t~ 133 (316)
.+++.... .......++.+|... + .+..+. +-........+..|+.+++.+..+. ++++|..++
T Consensus 246 ~l~~~~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 246 YVLLSIRE--GCDPVNRLWYCDLQQESNGITGILKWVKLI--DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp EEEEEEEC--SSSSCCEEEEEEGGGSSSSSCSSCCCEEEE--CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEEc--cCCCccEEEEEECcccccccCCccceEEee--CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Q ss_pred ---ceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCCCcccccCccccceeEEEeC
Q 040781 134 ---AWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSMPAVLKDSAASTWLSVAVNS 208 (316)
Q Consensus 134 ---~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (316)
.|+.+-+.........+... +.++++....+.. ..+.++|..+++ .+.+..-.. ..... +..-.+
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~----~~l~~~~~~~g~~~~~l~~~~~--~v~~~----~~s~d~ 391 (710)
T 2xdw_A 322 EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK----NTLQLHDLATGALLKIFPLEVG--SVVGY----SGQKKD 391 (710)
T ss_dssp CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE----EEEEEEETTTCCEEEEECCCSS--EEEEE----ECCTTC
T ss_pred CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE----EEEEEEECCCCCEEEecCCCCc--eEEEE----ecCCCC
Q ss_pred CEEEEEec---ccceEEEeeCCCCC
Q 040781 209 RQLYVTEK---YSGITVSFDPSTKG 230 (316)
Q Consensus 209 ~~~y~~~~---~~~~i~~yD~~~~~ 230 (316)
..+++... ....|+.||+.+++
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCc
No 272
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.01 E-value=3.2e+02 Score=22.22 Aligned_cols=65 Identities=5% Similarity=-0.171 Sum_probs=32.7
Q ss_pred ceeeeecCCCCceeecCCCCCCCCCCEEEEE-CC-EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781 123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GD-KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM 189 (316)
Q Consensus 123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~-~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~ 189 (316)
..++++|..++.++.+............+.. ++ .++......+. ....+.++|..+++-+.+...
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~ 282 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVMVM 282 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEEEC
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEeeeC
Confidence 4789999988877776431101001111222 23 34443211111 224488999988876665433
No 273
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.00 E-value=3.9e+02 Score=23.11 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=41.2
Q ss_pred CCEEEEEcCcCC---CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CC-EEEEEecccceEEEeeCC
Q 040781 154 GDKVVVAGGACD---FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SR-QLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 154 ~~~v~~~gg~~~---~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~-~~y~~~~~~~~i~~yD~~ 227 (316)
+.++|+.-.... .+.....+.++|..+++ .+..++. ..... ++.+. +. .+|+.....+.|.++|..
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~v--g~~P~----gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIEL--GHEID----SINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEE--EEEEC----EEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEEC--CCCcC----eEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 467888742111 11124579999988754 3333332 22122 44444 55 688887667899999998
Q ss_pred CCC
Q 040781 228 TKG 230 (316)
Q Consensus 228 ~~~ 230 (316)
+.+
T Consensus 402 t~k 404 (426)
T 3c75_H 402 TGE 404 (426)
T ss_dssp TCC
T ss_pred CCC
Confidence 766
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=21.72 E-value=3.8e+02 Score=22.95 Aligned_cols=128 Identities=5% Similarity=-0.051 Sum_probs=63.0
Q ss_pred eEEeeCCCCceeEccCCCCCCccceee-eecCCEEEEEcC-----CceeeeecCCCCcee---ecCCCCCCCCCCEEEEE
Q 040781 83 AHAYDARSHVWIEIKNNQPSSFDFLLR-SSHSTLLYTLSP-----SKLSFSFDPLHLAWH---HVDAPRVWRTDPVVALV 153 (316)
Q Consensus 83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~-~s~~~~l~~~gg-----~~~~~v~np~t~~w~---~lp~~~~~~~~~~~~~~ 153 (316)
+..+|+..+....+. +.......+. ...++.||+... ...++++++.. .+. .++.. ..-..+++.
T Consensus 161 I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~~~l~~~---~~p~giavd 234 (430)
T 3tc9_A 161 TRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVITELTKG---QNCNGAETH 234 (430)
T ss_dssp EEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSEEEEEEC---SSCCCEEEC
T ss_pred EEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeeeeeeccC---CCceEEEEe
Confidence 455777666655542 2111111122 223456787653 12455566533 232 23211 112233332
Q ss_pred --CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC
Q 040781 154 --GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 154 --~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~ 228 (316)
+..+|+.-. ....+..|+..+..-..+...+. ..... ++++. +..+|+.....+.|..||...
T Consensus 235 p~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~--~~~P~----gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 235 PINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQD--SGWEF----HIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSS--SSCCE----EEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCC--CCcce----eEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 456776642 22468889988765423322211 11111 55554 456999988777888877653
No 275
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=21.25 E-value=3.5e+02 Score=22.31 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=39.9
Q ss_pred CCEEEEEcCcC---C-CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCC
Q 040781 154 GDKVVVAGGAC---D-FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 154 ~~~v~~~gg~~---~-~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~ 227 (316)
+.++|+....+ . .......+.++|..+++ .+..++. .. .. ++++. |..+|+.+. +.|.+||..
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~--~~-p~----~ia~spdg~~l~v~n~--~~v~v~D~~ 333 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPG--RD-AL----SMTIDQQRNLMLTLDG--GNVNVYDIS 333 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEEC--TT-CC----EEEEETTTTEEEEECS--SCEEEEECS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEec--CC-ee----EEEECCCCCEEEEeCC--CeEEEEECC
Confidence 46888874311 1 11234579999988864 3443333 22 22 55554 567887775 789999998
Q ss_pred CC
Q 040781 228 TK 229 (316)
Q Consensus 228 ~~ 229 (316)
+.
T Consensus 334 t~ 335 (361)
T 2oiz_A 334 QP 335 (361)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=21.19 E-value=4e+02 Score=22.92 Aligned_cols=109 Identities=10% Similarity=0.025 Sum_probs=54.2
Q ss_pred CCEEEEEc-CCceeeeecCCCCce-eecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC--CCCee--
Q 040781 113 STLLYTLS-PSKLSFSFDPLHLAW-HHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD--TRTWE-- 184 (316)
Q Consensus 113 ~~~l~~~g-g~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~--t~~W~-- 184 (316)
.+.||+.. +.+.++++|+.++.. ..+...........+++. +..+|+.-. ....+..++.. ++...
T Consensus 239 ~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~------~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 239 NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN------GKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET------TTTEEEEEEBCTTTCCBCCC
T ss_pred CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC------CCCEEEEEeCCCCCcccCcE
Confidence 57777765 456899999987765 333211111111133332 335777642 22456665533 33221
Q ss_pred -ec-CC-----CCccccc-CccccceeEEE----------eCCEEEEEecccceEEEeeCC
Q 040781 185 -IC-QS-----MPAVLKD-SAASTWLSVAV----------NSRQLYVTEKYSGITVSFDPS 227 (316)
Q Consensus 185 -~~-~~-----~p~~~~~-~~~~~~~~~~~----------~~~~~y~~~~~~~~i~~yD~~ 227 (316)
.+ .. ....... .....-.++++ .++.+|+.....+.|..+|+.
T Consensus 313 ~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 313 YIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp EEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred EEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 11 00 0000000 00000015666 357899999877889999974
No 277
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=20.52 E-value=5.7e+02 Score=24.51 Aligned_cols=172 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred CceEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEE
Q 040781 81 TTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVA 160 (316)
Q Consensus 81 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~ 160 (316)
..+..||....+-.... +-......+..+.+..|...+..+.+.+||..+++....-. ...........-+.+.++.
T Consensus 39 g~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~s 115 (902)
T 2oaj_A 39 GEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLI 115 (902)
T ss_dssp SEEEEECSTTCEEEEEC--SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEE
T ss_pred CEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEE
Q ss_pred cCcCCCCCCCcEEEEEeCCCCC---------eee-cCCCCcccccCccccceeEEEeCC--EEEEEecccceEEEeeCCC
Q 040781 161 GGACDFEDDPLAVEMYSVDTRT---------WEI-CQSMPAVLKDSAASTWLSVAVNSR--QLYVTEKYSGITVSFDPST 228 (316)
Q Consensus 161 gg~~~~~~~~~~v~vy~~~t~~---------W~~-~~~~p~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~i~~yD~~~ 228 (316)
|+.++. +.+||..++. |.. ...... ..... +++++.. .+.+.+...+.| .||+.+
T Consensus 116 gs~dg~------V~lwd~~~~~~~~~~i~~~~~~~~~~~~h--~~~V~----sl~~sp~~~~~l~~g~~dg~v-lWd~~~ 182 (902)
T 2oaj_A 116 GLQNGS------MIVYDIDRDQLSSFKLDNLQKSSFFPAAR--LSPIV----SIQWNPRDIGTVLISYEYVTL-TYSLVE 182 (902)
T ss_dssp EETTSC------EEEEETTTTEEEEEEECCHHHHHTCSSSC--CCCCC----EEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred EcCCCc------EEEEECCCCccccceeccccccccccccC--CCCeE----EEEEccCCCCEEEEEeCCCcE-EEECCC
Q ss_pred CCccCCCcCC-------------------CCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781 229 KGWSGPFHLR-------------------QFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN 279 (316)
Q Consensus 229 ~~W~~~~~l~-------------------~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~ 279 (316)
+.-....... .+ ..+....-+|+.++.++.+.. +.+|.++
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~------V~~v~fspdg~~lasgs~Dg~-----i~lWd~~ 241 (902)
T 2oaj_A 183 NEIKQSFIYELPPFAPGGDFSEKTNEKRTPK------VIQSLYHPNSLHIITIHEDNS-----LVFWDAN 241 (902)
T ss_dssp TEEEEEECCCBCTTCCCSTTCCCTTSCBCCC------EEEEEECTTSSEEEEEETTCC-----EEEEETT
T ss_pred CceEEEEecccCCcCCCcccccccccccCCC------eEEEEEcCCCCEEEEEECCCe-----EEEEECC
No 278
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=20.37 E-value=5.1e+02 Score=23.92 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=54.3
Q ss_pred ceeeeecCCCC--c-eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC--CCeeecCCCCcccccCc
Q 040781 123 KLSFSFDPLHL--A-WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT--RTWEICQSMPAVLKDSA 197 (316)
Q Consensus 123 ~~~~v~np~t~--~-w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t--~~W~~~~~~p~~~~~~~ 197 (316)
..++++|..++ + ++.+.+...... ..+...+.++++..... .....+.++|..+ ..|+.+.+-.. . ..
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~l~~~~~--~-~l 366 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPRFDTVVPESK--D-NL 366 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCE-EEEEEETTEEEEEECTT---CTTCEEEEEECSSSSCEEEEEECCCS--S-EE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceE-EEEeccCCEEEEEECCC---CCCCEEEEEeCCCCccccEEEecCCC--C-eE
Confidence 57899998877 6 777743222111 12223566777664321 1235688888887 57887743211 1 11
Q ss_pred cccceeEEEeCCEEEEEeccc--ceEEEeeCCCCC
Q 040781 198 ASTWLSVAVNSRQLYVTEKYS--GITVSFDPSTKG 230 (316)
Q Consensus 198 ~~~~~~~~~~~~~~y~~~~~~--~~i~~yD~~~~~ 230 (316)
. ++...++.+++..... ..|..+|+..+.
T Consensus 367 ~----~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 367 E----SVGIAGNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp E----EEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred E----EEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence 1 4455577777765422 357788875543
Done!