BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040782
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1
SV=1
Length = 427
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/417 (88%), Positives = 393/417 (94%), Gaps = 3/417 (0%)
Query: 19 DESELPFKNILKPDQAILETLKQLFLAATTTTTAAANGASTSSSSSKPLTLSDLSLSATC 78
+ ELPFK+IL+ D I E LK +++ AAA SSSSSKPLTL+DLSLS++C
Sbjct: 14 EAEELPFKSILESDDVITELLKSYI---SSSIKAAAGAGGASSSSSKPLTLADLSLSSSC 70
Query: 79 REVTDLSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTT 138
REV DLSLS+VQ+ IET+I+QIARSILAG+GFSF VPSRA+SNQLYVPELDRIVLKDK+T
Sbjct: 71 REVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVPELDRIVLKDKST 130
Query: 139 LRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVA 198
LRPFAS+S+VRK+TIT +IL+LIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDV+
Sbjct: 131 LRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVS 190
Query: 199 CILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAM 258
C+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAM
Sbjct: 191 CMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAM 250
Query: 259 FILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD 318
FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD
Sbjct: 251 FILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD 310
Query: 319 PYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTG 378
PYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTG
Sbjct: 311 PYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTG 370
Query: 379 KDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435
KD+LEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ+DWL
Sbjct: 371 KDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 427
>sp|Q9Y5K1|SPO11_HUMAN Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2
SV=1
Length = 396
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 221/355 (62%), Gaps = 5/355 (1%)
Query: 85 SLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFAS 144
S S V ++IE +I I S+ +F + +R+S + + + + T R S
Sbjct: 43 SSSEVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKS 102
Query: 145 LS--TVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILG 202
S + +K ++ +KILS+I++L N + TKRD++YTD +LF +QT D +++D++C+L
Sbjct: 103 DSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLK 162
Query: 203 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFIL 261
+R SL++++ KG++ G L + ++G ++CT G A+P NI + ++ +DA F+L
Sbjct: 163 VSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCT-CGATAVAVPSNIQGIRNLVTDAKFVL 221
Query: 262 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320
+VEKDA + RL +D F N+ PCI++T KG PD+ TRL ++K+ +PV LVD+DP+
Sbjct: 222 IVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPH 281
Query: 321 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKD 380
G++I+ +Y GS +MS+++ +LT P I+WLG+ PSDL + +P+ +P+T++D
Sbjct: 282 GIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDS 341
Query: 381 LLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435
+L +V P W +E+ +M +K KAEIQAL+ YLS VYLP KL+ W+
Sbjct: 342 ILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396
>sp|Q9WTK8|SPO11_MOUSE Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2
SV=2
Length = 396
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 217/355 (61%), Gaps = 5/355 (1%)
Query: 85 SLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFAS 144
S S V + IE +I I +S+ +F + +R+S + + + + + T R S
Sbjct: 43 SSSEVLTAIENIIQDIIKSLARNEVPAFTIDNRSSWENIMFDDSVGLRMIPQCTTRKIRS 102
Query: 145 LS--TVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILG 202
S +V+K + +K+LS+I++L + + TKRD++YTD +LF +Q D+ +DD++C+L
Sbjct: 103 DSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAIDDISCMLK 162
Query: 203 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFIL 261
R SL+V++ KG++ G L + ++G + CT A+P NI + + +DA F+L
Sbjct: 163 VPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCT-CSATATAVPTNIQGMQHLITDAKFLL 221
Query: 262 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320
+VEKDA + RL +D F +R PCI+VT KG PD+ TRL ++K+ +PV LVD+DPY
Sbjct: 222 IVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVFTLVDADPY 281
Query: 321 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKD 380
G++I+ +Y GS +MS+++ NLT P I+WLG+ PSD+ + IP+ +P+T+ D
Sbjct: 282 GIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQMKLDS 341
Query: 381 LLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435
+L+ ++ P W +EL +M +K KAEIQAL+ YLS VYLP KL+ W+
Sbjct: 342 ILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFGGWI 396
>sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana
GN=SPO11-1 PE=1 SV=1
Length = 362
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 170/279 (60%), Gaps = 1/279 (0%)
Query: 155 VKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAE 214
+++L ++ QL N H +KRD++Y F+ Q+ D + D+ + C+R +LNV++
Sbjct: 80 LRVLLIVQQLLQENRHASKRDIYYMHPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVG 139
Query: 215 KGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAE 274
G+V+G L F + G DC +P ++ V D+ S A +IL+VEK+ + RLA
Sbjct: 140 NGLVMGWLKFREAGRKFDCLNSLNTAYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLAN 199
Query: 275 DRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKN 334
D F CI++T +G PDV+TR FLR + +L LPV LVD DPYG +IL+ Y GS
Sbjct: 200 DMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQ 259
Query: 335 MSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKN-PGW 393
M+YD +L PD+KWLG PSD + Y +P+QC LP+TE+D K + +L ++K+ P W
Sbjct: 260 MAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAMLLRCYLKREMPQW 319
Query: 394 VEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQK 432
EL M+K K EI+ALS +LSEVY+P K++++
Sbjct: 320 RLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIRRE 358
>sp|Q9YE67|TOP6A_AERPE Type 2 DNA topoisomerase 6 subunit A OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=top6A PE=3 SV=2
Length = 389
Score = 224 bits (572), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 199/356 (55%), Gaps = 24/356 (6%)
Query: 104 ILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQ 163
++ G ++P R SN ++ PE +V+ ++ R F ++ R+ T+ + S+I+Q
Sbjct: 33 VIKGRPPKLEIPKRTLSNTIFDPERGILVIGEEKLEREFLNVGESRRFMQTLLMASIIYQ 92
Query: 164 LCLRNIHVTKRDLFYT---------------DVKLFQDQTQSDAVLDDVACILGCTRSSL 208
+ N + T RDL+Y + + +Q +SD+V+ D+ G R +
Sbjct: 93 SLIENEYPTIRDLYYKGKHTIVYRDYSGRKREENTWDEQKESDSVIQDIEVYTGLFREDM 152
Query: 209 NVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAA 268
+++ EKG VVG + GD+ID +K+G G AI P D + + DA F+L+VEKDA
Sbjct: 153 LILSKEKGKVVGNMRIRSGGDVIDLSKLGHGAYAIEPTPDLIEFLDVDAEFVLVVEKDAV 212
Query: 269 YIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVY 328
+ +L F+ ++ ++VT GQPD ATR F+R++ ELKLPV + DSDPYG I SVY
Sbjct: 213 FQQLHRAGFWKKYKALLVTGSGQPDRATRRFVRRLHEELKLPVYIITDSDPYGWYIYSVY 272
Query: 329 GCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYK-----IPEQCR----LPMTEQDIKTGK 379
GS +SY+S L TP K+LG++ +D+ Y+ + E R + T++DIK K
Sbjct: 273 KVGSITLSYESERLATPKAKFLGVQMTDIFGYRGKKPYLSEAERKKFMIKATDKDIKRAK 332
Query: 380 DLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435
+LL ++ KN W E+ L +K K EI+A++S G ++ + Y+P K++ DW+
Sbjct: 333 ELLNYSWIGKNRRWNVEIRLFLKHLVKLEIEAIASKGLKFFAYQYIPEKIETGDWI 388
>sp|A2BLE8|TOP6A_HYPBU Type 2 DNA topoisomerase 6 subunit A OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=top6A PE=3 SV=1
Length = 387
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 195/361 (54%), Gaps = 25/361 (6%)
Query: 99 QIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKIL 158
+I ++ G + +P R SN +Y + ++L + R F L +K T+ +
Sbjct: 27 EILEQVMRGENPTIMLPKRTLSNTIYDEKRKLLLLGPEKLKRSFFDLHESKKFMQTLLMA 86
Query: 159 SLIHQLCLRNIHVTKRDLFY---------------TDVKLFQDQTQSDAVLDDVACILGC 203
+I++ RN + T RDL+Y + + +Q +SDAV+ D+ G
Sbjct: 87 RIIYEALERNEYPTIRDLYYRGKHTIVYREPGGRRHEENTWDEQRESDAVIRDIEVFTGL 146
Query: 204 TRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLV 263
R + +++ EKG VVG + GD+ID +KMG G AI P D + + DA ++L+V
Sbjct: 147 LREEMLILSKEKGKVVGNMRIRSGGDIIDLSKMGHGAYAIEPTPDLIEFIDVDAEYVLVV 206
Query: 264 EKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLK 323
EKDA + +L F+ + I++T+ GQPD ATR F+R++ EL LPV L D+DPYG
Sbjct: 207 EKDAVFQQLHRIGFWKKHRAILITSAGQPDRATRRFVRRLNEELGLPVYILTDADPYGWY 266
Query: 324 ILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYK-----IPEQCR----LPMTEQD 374
I SV+ GS +SY+S L TP+ +++G+ +D+ YK + EQ R + E D
Sbjct: 267 IYSVFKIGSITLSYESERLATPNARFIGVSMTDIFGYKSKKPYLTEQERRNFIIKAKEAD 326
Query: 375 IKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDW 434
IK +L + + W E+++ ++ K K EI+A++S G ++L++ YLP K++ DW
Sbjct: 327 IKRAYELKNYKWF-QTKKWQIEIDIFLEKKAKLEIEAMTSKGLRFLADKYLPEKIETGDW 385
Query: 435 L 435
+
Sbjct: 386 I 386
>sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana
GN=SPO11-2 PE=1 SV=1
Length = 383
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 188/328 (57%), Gaps = 14/328 (4%)
Query: 116 SRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRD 175
S + N+ + ++ I L T + T + K++ + Q+ L+ VT+R+
Sbjct: 62 SNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQRE 121
Query: 176 LFYTDV----KLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLIFSDNG-DM 230
LFY + F Q + + + DV +L C+R SL ++A+ +G+V GRL + G +
Sbjct: 122 LFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPGKEA 181
Query: 231 IDCTKMGMGGKAIPPNIDRVGD--MQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTA 288
+DC+ G G AI +++ + + M++DA +I++VEK A + RL EDR +N PC+ +TA
Sbjct: 182 VDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVFITA 241
Query: 289 KGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDI 347
KG PD+ATR FL +M LP+L LVD +P GL IL + GS M ++ ++
Sbjct: 242 KGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC-NV 300
Query: 348 KWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKA 407
KW+G+R DL+ IPE+ +P+ +D + K LL +++N ++EEL+LMV+T ++A
Sbjct: 301 KWIGLRGDDLN--LIPEESLVPLKPKDSQIAKSLLSSKILQEN--YIEELSLMVQTGKRA 356
Query: 408 EIQALSSFGFQYLSEVYLPLKLQQKDWL 435
EI+AL G+ YL + Y+ K+ Q ++
Sbjct: 357 EIEALYCHGYNYLGK-YIATKIVQGKYI 383
>sp|O05208|TOP6A_SULSH Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus shibatae
GN=top6A PE=1 SV=1
Length = 389
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 27/365 (7%)
Query: 97 ILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVK 156
L + + G ++P R SN +Y + ++L +K R F L+ ++ TV
Sbjct: 25 FLNLVEQLKKGEPLVMEIPMRTLSNAIYDEKRKLLLLGEKKLRRNFLDLNEAKRFMQTVL 84
Query: 157 ILSLIHQLCLRNIHVTKRDLFY-----------------TDVKLFQDQTQSDAVLDDVAC 199
+ S+I+ + + + T RDL+Y ++ + +Q +SD+V+ D+
Sbjct: 85 MASIIYDALVSDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEENTWDEQKESDSVIVDIEV 144
Query: 200 ILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMF 259
R + +++ EKG VVG L D+ID +K G G AI P D + + DA F
Sbjct: 145 FTSLLREEMLILSKEKGKVVGNLRIRSGNDVIDLSKTGHGAYAIEPTPDLIDFIDVDAEF 204
Query: 260 ILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDP 319
+L+VEKDA + +L F+ ++ I++T+ GQPD ATR F+R++ ELKLPV L D+DP
Sbjct: 205 VLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADP 264
Query: 320 YGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDL-----DKYKIPEQCR----LPM 370
YG I SV+ GS ++SY+S L TPD K+LG+ D+ K + E R +
Sbjct: 265 YGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGDIFGNSRKKPYLSEAERKNYIIKA 324
Query: 371 TEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 430
+ DIK +++ ++ K W EE+N ++ K K EI+A++S G ++L+ Y+P K+
Sbjct: 325 KDADIKRAEEIKNYEWF-KTKAWQEEINTFLQRKAKLEIEAMASKGLKFLAFQYIPEKIT 383
Query: 431 QKDWL 435
KD++
Sbjct: 384 NKDYI 388
>sp|Q971T1|TOP6A_SULTO Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=top6A PE=3
SV=1
Length = 387
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 198/368 (53%), Gaps = 25/368 (6%)
Query: 92 TIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKS 151
T+ + +++ I + ++P R N +Y + ++L ++ R F L+ ++
Sbjct: 20 TLRQVFVKLIEQINNSEPPTMEIPKRTLGNTIYDEKRKLLLLGEEKLKRSFFDLNESKRF 79
Query: 152 TITVKILSLIHQLCLRNIHVTKRDLFYT---------------DVKLFQDQTQSDAVLDD 196
TV + S+I+ + + + T RDL+Y + + +Q +SD+V+ D
Sbjct: 80 MQTVLMASIIYDALINDEYPTIRDLYYRGKHSIILKDPRGKTYEENTWDEQKESDSVIMD 139
Query: 197 VACILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSD 256
+ R + +++ EKG VVG + D+ID +KMG G +I P D + + +
Sbjct: 140 IEVFTSLLREDMLILSKEKGKVVGDMRIRSGNDIIDLSKMGHGAYSIEPTPDLIDFVDIN 199
Query: 257 AMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVD 316
A F+L+VEKDA + +L F+ ++ I+VT+ GQPD ATR F+R++ ELKLPV L D
Sbjct: 200 AEFVLVVEKDAVFQQLHRAGFWKQYKAILVTSAGQPDRATRRFVRRLNEELKLPVYILTD 259
Query: 317 SDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDL--DKYKIP---EQCR---- 367
+DPYG I SV+ GS ++SY+S L TP+ K+LG+ +D+ D K P EQ R
Sbjct: 260 ADPYGWYIYSVFRIGSISLSYESERLATPNAKFLGVSMTDIFGDSNKKPYLSEQERRNYI 319
Query: 368 LPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPL 427
+ + DIK ++ + K W E+ + + K K EI+A++S G ++L+ Y+P
Sbjct: 320 IKAKDADIKRATEIKNYQWF-KTKAWQHEIEIFLNKKSKLEIEAMASKGLKFLAFQYIPE 378
Query: 428 KLQQKDWL 435
K++ KD++
Sbjct: 379 KIKSKDYI 386
>sp|Q8U0K9|TOP6A_PYRFU Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=top6A PE=3
SV=1
Length = 382
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 188/359 (52%), Gaps = 16/359 (4%)
Query: 89 VQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTV 148
V +E L +I + AG F VP+R SN + E I L DK + R F +++
Sbjct: 19 VLKKLEDLAYKILEEVKAGKNPYFDVPTRGLSNVYFDEEARLIKLGDKLSRRYFLNVAHA 78
Query: 149 RKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACI 200
RK T+ +++ + +L H + R+ +Y T F+DQ++SD +++D+ +
Sbjct: 79 RKFMQTLILMAYVKRLVSEGKHASLREAYYANKHTIPGTHENTFEDQSESDPIIEDLERM 138
Query: 201 LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFI 260
LG R +++ A +G V G ++ D D + +K+GMGG A+P ++ + + + ++
Sbjct: 139 LGVLREEMHITADRRGYVYGDIVIKDGEDEFNASKLGMGGWAVPGTVEHIQFPEINVDYV 198
Query: 261 LLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320
L+VE A RL E+++ R +I+ +GQ R + ++ E LP++ D DPY
Sbjct: 199 LVVETAAMADRLIEEKYPKRERALIIATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPY 258
Query: 321 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY---KIPEQCR-LPMTEQDIK 376
G I S GS N++Y S L TPD K++G+ D+ +Y + E+ + +P ++
Sbjct: 259 GWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYGLEHVTEKLKGIPPDKKGGP 318
Query: 377 TG--KDLLEEDFVK--KNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
TG K L+EE +N W +L L +K + E QAL++ +++++ YLP K+++
Sbjct: 319 TGDYKRLIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEYLPEKIRE 377
>sp|Q9V134|TOP6A_PYRAB Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=top6A PE=3 SV=1
Length = 382
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 189/359 (52%), Gaps = 16/359 (4%)
Query: 89 VQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTV 148
V +E L +I + +G F VP+R +N + E I L DK + R F +++
Sbjct: 19 VLKKLEDLAWKILEEVKSGKNPYFDVPTRGLNNVYFDEEARLIKLGDKLSRRYFLNVAHA 78
Query: 149 RKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACI 200
RK T T+ +++ I +L H + R+ +Y T F+DQ++SD +++D+ +
Sbjct: 79 RKFTQTLILMAYIKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSESDPIIEDLERM 138
Query: 201 LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFI 260
LG R +++ A +G + G ++ D D + +K+G GG A+P ++ + + + ++
Sbjct: 139 LGVLREEMHITADRRGYIYGDIVIKDGEDEFNASKLGTGGWAVPGTVEHIQFPEVNVDYV 198
Query: 261 LLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320
L+VE A RL E+++ + C+IV +GQ R + ++ E LP++ D DPY
Sbjct: 199 LVVETAAMADRLIEEKYPKKENCLIVATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPY 258
Query: 321 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY---KIPEQCR-LPMTEQDIK 376
G I S GS N++Y S L TPD K++G+ D+ +Y + E+ + +P ++
Sbjct: 259 GWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLEHVTEKLKGIPPDKKGGP 318
Query: 377 TG--KDLLEEDFVK--KNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
TG K L+EE +N W +L L +K + E QAL++ +++++ YLP K+++
Sbjct: 319 TGDYKRLIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEYLPEKIRE 377
>sp|Q57815|TOP6A_METJA Type 2 DNA topoisomerase 6 subunit A OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=top6A PE=1 SV=1
Length = 369
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 30/378 (7%)
Query: 73 SLSATCREVTDLSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIV 132
++S RE+ A Q IE L ++ ++ G +P R+ SN ++ E
Sbjct: 6 AISKKPREI------AKQKIIE-LAKKMYEDLMKGKRPKITMPIRSLSNAMFDKEKGSFT 58
Query: 133 LKDKTTLRPFASLSTVRKSTI---TVKILSLIHQLCLRNIHVTKRDLFYTDVKL----FQ 185
L K R TV ++ I T K+L QL + T R+ +Y F
Sbjct: 59 LVGKEKARTL----TVNQAKIFAQTTKMLEFAKQLLETDDFSTLREAYYVSKNWGEARFD 114
Query: 186 DQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLIF---SDNGDMI-DCTKMGMGG 240
DQ S+ V++D+ LG R L I E G VVG L + G+++ DCTK+G G
Sbjct: 115 DQQASNNVIEDLEAALGVLREHLGFIPEEDGSSVVGPLKIIEETPEGELVVDCTKLGTGA 174
Query: 241 KAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL 300
IP ++ ++ ++++DA FIL +E + RL +RF+++ CI+V+ KG P ATR F+
Sbjct: 175 YNIPNDVTKL-NLETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFI 233
Query: 301 RKMKMELKLPVLALVDSDPYG-LKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDK 359
+++ E LPVL D DPYG L I GS + + L+ P + +G+ P D+
Sbjct: 234 KRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIID 293
Query: 360 YKIPEQCRLPMTEQDIKTGKDLLE-EDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQ 418
Y +P P+ EQDIK KD L+ +DFV+ P W + L M+ +AE Q+L+ +G +
Sbjct: 294 YDLPTH---PLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLK 350
Query: 419 YLSEVYLPLKLQ-QKDWL 435
Y+ YLP K++ + WL
Sbjct: 351 YVVNTYLPEKIKDESTWL 368
>sp|O59209|TOP6A_PYRHO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=top6A PE=3 SV=2
Length = 382
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 187/361 (51%), Gaps = 20/361 (5%)
Query: 89 VQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTV 148
V +E L +I +G F VP+R +N + E I L D+ + R F +++
Sbjct: 19 VLKKLEDLAWKILEEAKSGKNPYFDVPTRGLNNVYFDEESRLIRLGDRLSRRYFLNVAHA 78
Query: 149 RKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACI 200
RK T+ +++ I +L H + R+ +Y T F+DQ++SD +++D+ +
Sbjct: 79 RKFMQTLILMAYIKRLVSEGKHASLREAYYANKHTVPGTRENTFEDQSESDPIIEDLERM 138
Query: 201 LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFI 260
LG R +++ A +G + G ++ D D + +K+G GG A+P ++ + + + ++
Sbjct: 139 LGVLREEMHITADRRGYIYGDIVIKDGEDEFNASKLGTGGWAVPGTVEHIQFPEINVDYV 198
Query: 261 LLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320
L+VE A RL E+++ R C+IV +GQ R + ++ E LP++ D DPY
Sbjct: 199 LVVETAAMADRLIEEKYPKRENCLIVATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPY 258
Query: 321 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY---KIPEQCR-LPMTEQDIK 376
G I S GS N++Y S L TPD K++G+ D+ +Y + E+ + +P ++
Sbjct: 259 GWYIYSTIKRGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLENVTEKLKGIPPDKKGGP 318
Query: 377 TG--KDLLEE----DFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 430
TG K L+EE F K W +L L +K + E QAL++ +++++ YLP K++
Sbjct: 319 TGDYKRLIEELNYPWFQDKE--WQRQLKLALKWGVRIEQQALANKSLEFVAKEYLPEKIR 376
Query: 431 Q 431
+
Sbjct: 377 E 377
>sp|O27089|TOP6A_METTH Type 2 DNA topoisomerase 6 subunit A OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=top6A PE=3 SV=1
Length = 353
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 163/323 (50%), Gaps = 8/323 (2%)
Query: 112 FQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHV 171
+VPSR +SN +Y + VL D+ R ++ ++K + + L R
Sbjct: 30 IKVPSRGTSNIIYDEDKRHYVLGDRYGTRSMGNVKQIKKIGQMLYTANFCKDLVAREKTA 89
Query: 172 TKRDLFYTDVKL---FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLIFSDNG 228
T R+L+Y F DQ +S+ V +D+ LG TR L ++ E G V + G
Sbjct: 90 TLRELYYISEGWEVDFADQQESNIVGEDLEVTLGMTREELGLMPEEDGASVYGALTVREG 149
Query: 229 DM-IDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVT 287
D+ ID + G G I P ID V + D ++ VE + RL +++ Y +F +IV
Sbjct: 150 DIEIDALRSGKSGYNISPTIDEVEFVDHDVERVIAVETMGMFHRLVQEKAYKKFDALIVG 209
Query: 288 AKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDI 347
KGQ ATR F++++ EL LPV D DP+G I V GS +++ + L TPD
Sbjct: 210 LKGQAARATRRFIKRVNEELNLPVYICNDGDPWGFHIAMVIISGSAKLAHVNHQLATPDA 269
Query: 348 KWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKA 407
K+LG+ SD+ Y +P P+ + D+ K+LL +D + W E+ M+ +KA
Sbjct: 270 KFLGVTASDIINYDLPTD---PLKDVDVVRLKELL-QDPRYRGDFWKTEIKKMLTIGKKA 325
Query: 408 EIQALSSFGFQYLSEVYLPLKLQ 430
E Q+ S +G +Y+ + YLP KL+
Sbjct: 326 EQQSFSKYGLEYVVDTYLPEKLE 348
>sp|Q5JH82|TOP6A_PYRKO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=top6A PE=3
SV=1
Length = 385
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 18/354 (5%)
Query: 99 QIARSILAGNGFSFQVPSRASSNQLYVPELDRIV-LKDKTTLRPFASLSTVRKSTITVKI 157
+I I AG F +P R SN +Y E R++ + DK + R F +++ RK T+ I
Sbjct: 32 RILEDIKAGKNPHFDIPMRGLSN-VYFDEKSRLIKMGDKLSRRYFLNVAHARKFMQTLLI 90
Query: 158 LSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACILGCTRSSLN 209
++ + +L H + R+ +Y T F+DQ++SD +++D+ + G R ++
Sbjct: 91 MAYVKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSESDPIIEDLERMFGVLREEMH 150
Query: 210 VIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAY 269
+ A +G + G ++ D D + +++G GG A+P ++ + + + + L+VE A
Sbjct: 151 ITADRRGYIYGDIVIRDGEDEFNASRLGSGGWAVPGTVEHIQFPEINVDYALVVETAAMA 210
Query: 270 IRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYG 329
RL E++F R +I+ +GQ R + ++ E LP++ D DPYG I S
Sbjct: 211 DRLIEEKFPKRENALIIATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYSTIK 270
Query: 330 CGSKNMSYDSANLTTPDIKWLGIRPSDLDKY---KIPEQCR-LPMTEQDIKTG--KDLLE 383
GS N++Y S L TP+ K++G+ D+ KY + E+ + +P ++ TG K +LE
Sbjct: 271 QGSINLAYLSDKLATPESKFVGMTMDDIKKYGLENVTEKLKGIPPNKKGGPTGDYKRILE 330
Query: 384 EDFVK--KNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435
E +N W +L L +K + E QAL++ +++++ YLP K+ D L
Sbjct: 331 EMNYPWFQNKEWQRQLQLALKWGVRIEQQALANKSLEFVAKEYLPEKINNGDLL 384
>sp|Q9HR32|TOP6A_HALSA Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=top6A PE=3
SV=1
Length = 366
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 16/330 (4%)
Query: 114 VPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTK 173
+P+R+ SN Y + D V D + R S+ RK +V + + Q T
Sbjct: 37 LPTRSKSNIEYDEDADVWVYGDSQSTRSANSVRGARKLLKSVYTVDFLAQQLDEGRSSTL 96
Query: 174 RDLFYTDVKL------FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLIFSD 226
R+L+Y F DQ++SD +++D+ + G R ++ E G V+G L +
Sbjct: 97 RELYYLSESWDEAEAQFNDQSESDKLVEDLEIVSGVKREDFHMRPEESGAKVMGPLRLRE 156
Query: 227 N---GDM-IDCTK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRF 281
GD I C + +G GG IP N D + + +DA F+L VE RL E+ F + +
Sbjct: 157 QTRRGDREIHCQEDVGQGGYQIPNNPDTIDFLDTDADFVLCVETGGMRDRLVENGFDDDY 216
Query: 282 PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSAN 341
I+V GQP ATR +++ EL LPV D DP+ +I GS ++ S
Sbjct: 217 NAIVVHLGGQPARATRRLTKRLHDELDLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEY 276
Query: 342 LTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMV 401
L TP +++GIRP D+ Y +P P+++ D+ + LE+ + + W E++ L +
Sbjct: 277 LATPQAQFIGIRPQDIVDYDLPTD---PLSDSDVNALESELEDPRFQSD-FWTEQIGLQL 332
Query: 402 KTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
+KAE QAL+S G ++++ YLP +L +
Sbjct: 333 DIDKKAEQQALASRGLDFVTDTYLPERLAE 362
>sp|B0R4D2|TOP6A_HALS3 Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=top6A PE=3 SV=1
Length = 366
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 16/330 (4%)
Query: 114 VPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTK 173
+P+R+ SN Y + D V D + R S+ RK +V + + Q T
Sbjct: 37 LPTRSKSNIEYDEDADVWVYGDSQSTRSANSVRGARKLLKSVYTVDFLAQQLDEGRSSTL 96
Query: 174 RDLFYTDVKL------FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLIFSD 226
R+L+Y F DQ++SD +++D+ + G R ++ E G V+G L +
Sbjct: 97 RELYYLSESWDEAEAQFNDQSESDKLVEDLEIVSGVKREDFHMRPEESGAKVMGPLRLRE 156
Query: 227 N---GDM-IDCTK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRF 281
GD I C + +G GG IP N D + + +DA F+L VE RL E+ F + +
Sbjct: 157 QTRRGDREIHCQEDVGQGGYQIPNNPDTIDFLDTDADFVLCVETGGMRDRLVENGFDDDY 216
Query: 282 PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSAN 341
I+V GQP ATR +++ EL LPV D DP+ +I GS ++ S
Sbjct: 217 NAIVVHLGGQPARATRRLTKRLHDELDLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEY 276
Query: 342 LTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMV 401
L TP +++GIRP D+ Y +P P+++ D+ + LE+ + + W E++ L +
Sbjct: 277 LATPQAQFIGIRPQDIVDYDLPTD---PLSDSDVNALESELEDPRFQSD-FWTEQIGLQL 332
Query: 402 KTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
+KAE QAL+S G ++++ YLP +L +
Sbjct: 333 DIDKKAEQQALASRGLDFVTDTYLPERLAE 362
>sp|Q5V4R4|TOP6A_HALMA Type 2 DNA topoisomerase 6 subunit A OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=top6A PE=3 SV=1
Length = 368
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 167/330 (50%), Gaps = 16/330 (4%)
Query: 114 VPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTK 173
+P+R SN ++ + V D+ + R ++S K V + + Q + T
Sbjct: 39 IPTRTKSNIVFDEDEQVWVYGDRNSTRSAKTISGAEKILKAVYTIDFLSQQLEEDRSSTL 98
Query: 174 RDLFYT------DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLIF-- 224
R+L+Y D F Q +S+ +++D+ + R ++ E G V+G L+
Sbjct: 99 RELYYLSESWDLDEAQFNTQDESNNLIEDLEIVSDVKREDFHMRPEESGAKVMGPLLLRE 158
Query: 225 -SDNGDM-IDCTK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRF 281
++ GD I C +G GG IP N D + + +DA F+L VE RL E+ F + +
Sbjct: 159 QTNRGDREIHCQDDVGQGGYQIPNNPDTIEFLDNDAKFVLCVETGGMRDRLVENGFDDEY 218
Query: 282 PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSAN 341
++V GQP ATR ++++ EL LPV D DP+ +I GS ++ S
Sbjct: 219 DALVVHLGGQPARATRRLIKRLHDELDLPVTVFTDGDPWSYRIFGSVSYGSIKSAHLSEY 278
Query: 342 LTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMV 401
L TP+ +++GIRP D+ +Y++P P+++ D+ + LE+ + + W E++ L +
Sbjct: 279 LATPEAQFIGIRPEDIVEYELPTD---PLSDSDVNALESELEDPRFQTD-FWEEQIELQL 334
Query: 402 KTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
+KAE QAL+S G +++E YLP +L +
Sbjct: 335 DINKKAEQQALASRGLDFVTETYLPERLDE 364
>sp|Q3IPW7|TOP6A_NATPD Type 2 DNA topoisomerase 6 subunit A OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=top6A PE=3 SV=1
Length = 368
Score = 148 bits (373), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 171/333 (51%), Gaps = 16/333 (4%)
Query: 111 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIH 170
+ ++P+R SN ++ + D V D+T+ R S+ +K + + + +
Sbjct: 36 TMEIPTRTKSNIVFDEDKDVWVYGDRTSTRSANSVRGAQKLLKAIYTIEFLADQLEQGRS 95
Query: 171 VTKRDLFY------TDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLI 223
T R+L+Y + F DQ +S+ +++D+ + TR ++ E G ++G L
Sbjct: 96 STLRELYYLSESWDEERAQFNDQDESNQLVEDLEIVSKVTREDFHMRPEESGATIMGPLY 155
Query: 224 FSDN---GDM-IDCTK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFY 278
+ G+ I C K +G GG IP N D + + +DA F+L VE RL E+ F
Sbjct: 156 LREQTRRGEREIHCQKDVGEGGYQIPNNPDTIEFLDNDADFVLCVETGGMRDRLVENGFD 215
Query: 279 NRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYD 338
IIV KGQP ATR +++ +L LPV+ D DP+ +I + GS ++
Sbjct: 216 EEHNVIIVHLKGQPARATRRITKRLHDDLDLPVVVFCDGDPWSYRIYASVAYGSIKSAHL 275
Query: 339 SANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELN 398
S L TP+ +++GI+P+D+ +Y +P P+++ DI + L +D ++ W E++
Sbjct: 276 SEYLATPEAEYIGIQPADIVEYDLPTD---PLSDSDINALESEL-DDPRFQDDYWREQIE 331
Query: 399 LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
L + +KAE QAL+S G +++E YLP +L +
Sbjct: 332 LQLDIGKKAEQQALASRGLDFVTETYLPERLGE 364
>sp|Q8PUB7|TOP6A_METMA Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=top6A PE=1 SV=1
Length = 369
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 39/360 (10%)
Query: 97 ILQIARSILAGNGFSFQV------PSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRK 150
+L+IA I N F +V PSR +N Y E D V D+ + R S TV+
Sbjct: 20 LLEIAEKIY--NQFEEEVVPSVSLPSRTKANLEYSDESDVWVYGDRESER---SAKTVKG 74
Query: 151 STITVKILS----LIHQLCLRNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILG 202
+ +K LI++ RN T R+L+Y D F++Q +SD +++D+ +
Sbjct: 75 AFQLLKTTYATDFLINEHLARNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTS 134
Query: 203 CTRSSLNVIAAEKGVVV-GRLIFSDN---GDM-IDCTK-MGMGGKAIPPNIDRVGDMQSD 256
R ++ E G + G + ++ G+ I C K +G GG IP N++ + + D
Sbjct: 135 LQREYFHMRPEEDGATMFGPIEITEQTKRGERNIHCQKDVGEGGYQIPFNVENIEFQKHD 194
Query: 257 AMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVD 316
A I+ +E Y RL E+ F + I+V KGQP +TR +++M EL +PV D
Sbjct: 195 ASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTD 254
Query: 317 SDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIK 376
DP+ +I + G+ ++ S + TP K+LG++PSD+ +Y++ +TEQD+
Sbjct: 255 GDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTD---KLTEQDVS 311
Query: 377 TGKDLL-----EEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
+ L E D+ W E++ L + +KAE QA + G +++EVYLP +L++
Sbjct: 312 ALRSELSDPRFESDY------WKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLKE 365
>sp|Q8TQF8|TOP6A_METAC Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=top6A PE=3 SV=2
Length = 373
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 169/335 (50%), Gaps = 21/335 (6%)
Query: 111 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILS----LIHQLCL 166
S +PSR +N Y E D V D+ + R S TV+ + +K LI++
Sbjct: 42 SVSLPSRTKANIEYSDESDVWVYGDRESER---SAKTVKGAFQLLKTTYATDFLINEHLA 98
Query: 167 RNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVV-GR 221
N T R+L+Y D F++Q +SD +++D+ + R ++ E G + G
Sbjct: 99 HNRGSTLRELYYISEGWDYAKFKEQAESDRLIEDLELLTSLQREYFHMRPEEDGATMFGP 158
Query: 222 LIFSD----NGDMIDCTK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDR 276
+ S+ I C K +G GG IP N++ + DA I+ +E Y RL E+
Sbjct: 159 IEISELTKRGARNIHCQKDVGEGGYQIPFNVENIEFKNHDASMIIAIETGGMYARLMENG 218
Query: 277 FYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMS 336
F + I+V KGQP +TR +++M EL++PV D DP+ +I + G+ +
Sbjct: 219 FDEAYNAILVHLKGQPARSTRRIIKRMNEELEIPVAVFTDGDPWSYRIYASVAYGAIKSA 278
Query: 337 YDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEE 396
+ S + TP ++LG++PSD+ +Y++ +TEQDI + L D ++ W E+
Sbjct: 279 HLSEFMATPAARFLGLQPSDIVEYELSTD---KLTEQDISALRSEL-SDPRFESEYWKEQ 334
Query: 397 LNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
+ L + +KAE QA + G +++EVYLP +L++
Sbjct: 335 IQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLKE 369
>sp|O29322|TOP6A_ARCFU Type 2 DNA topoisomerase 6 subunit A OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=top6A PE=3 SV=1
Length = 360
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 179/350 (51%), Gaps = 22/350 (6%)
Query: 96 LILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITV 155
++ I + AG + +R N + E + V D+ ++R S TV+ + +
Sbjct: 15 IVQNIYDQMKAGQVPELHIATRTKYNIEFNEESEVWVYGDRKSVR---SAKTVKGAYRIL 71
Query: 156 KILSLI----HQLCLRNIHVTKRDLFYTD----VKLFQDQTQSDAVLDDVACILGCTRSS 207
K+ +I QL L N T R+L+Y F++Q +SD +++D+ + R
Sbjct: 72 KMTYVIGFLKEQLNL-NKSSTLRELYYISEGWGAAKFEEQPESDRLVEDLEILTNFQREH 130
Query: 208 LNVIAAEKGV-VVGRLIFSDNGDM----IDCTK-MGMGGKAIPPNIDRVGDMQSDAMFIL 261
++ E G V+G L + I C +G GG IP N+D++ + DA F++
Sbjct: 131 FHIRPEEDGATVIGPLRVREETRRGVREIHCQDDVGEGGYQIPVNVDKIEFVDHDAKFVI 190
Query: 262 LVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYG 321
+E RL E+ F ++ IIV KGQP +TR LR++ EL LPV+ D DP+
Sbjct: 191 AIETGGMRDRLVENGFDEKYDAIIVHLKGQPARSTRRLLRRLNTELNLPVVVFTDGDPWS 250
Query: 322 LKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDL 381
+I + GS ++ S L TP +++GIRP+D+ KY +P +TE+DIK +
Sbjct: 251 YRIFASVAYGSIKSAHLSEYLATPAAQFVGIRPTDIVKYDLPAD---KLTEEDIKALNAI 307
Query: 382 LEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
L D + W +E+NL ++ +K+E QAL+ +G Y+++VYLP +L +
Sbjct: 308 L-TDPRFDSEFWKKEVNLQLEINKKSEQQALAKYGLDYVTDVYLPERLSE 356
>sp|Q468I6|TOP6A_METBF Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=top6A PE=3 SV=1
Length = 369
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 35/342 (10%)
Query: 111 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVR------KSTITVKILSLIHQL 164
S +PSR SN Y E D V + + R S TV+ K+T + L I++
Sbjct: 38 SISLPSRTKSNLEYSNESDVWVYGGRESER---SAKTVKGAFQLLKTTYATEFL--INEH 92
Query: 165 CLRNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVV- 219
++ T R+L+Y + F++Q +SD +++D+ + R ++ E G +
Sbjct: 93 LAQSRGSTLRELYYISEGWEAAKFKEQAESDRLIEDLELLTNLQREYFHMRPEEDGATMF 152
Query: 220 GRLIFSDNGDM----IDCTK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAE 274
G + ++ + I C K +G GG IP N++ + DA I+ +E Y RL E
Sbjct: 153 GPIEITEQTNRGERNIHCQKDVGEGGYQIPFNVENIEFKAHDASMIIAIETGGMYARLME 212
Query: 275 DRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKN 334
+ F + I+V KGQP +TR +++M EL +PV D DP+ +I + G+
Sbjct: 213 NGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGAIK 272
Query: 335 MSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLL-----EEDFVKK 389
++ S + TP K+LG++PSD+ +Y++ +TEQDI + L E D+
Sbjct: 273 SAHLSEFMATPAAKFLGLQPSDIVEYELSTD---KLTEQDINALRSELSDPRFESDY--- 326
Query: 390 NPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 431
W E++ L + +KAE QA + G +++EVYLP +L++
Sbjct: 327 ---WKEQIQLQLDIGKKAEQQAFAGKGLNFVTEVYLPNRLKE 365
>sp|P40384|REC12_SCHPO Meiotic recombination protein rec12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec12 PE=1 SV=2
Length = 345
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 147/262 (56%), Gaps = 14/262 (5%)
Query: 156 KILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEK 215
++L +H+ + + +TKRD++Y DV LF+ QT D +L D++ +GC+RS LNV A+ K
Sbjct: 76 RVLDCVHEAVISDTVITKRDIYYRDVDLFKRQTVVDELLGDISNTIGCSRSDLNVEASAK 135
Query: 216 GVVVGRL-IFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAE 274
G+V G + I +NG +I T K + + R+ + S A ++L++EK+A + L E
Sbjct: 136 GLVFGSIHIALENGTVITAT------KPLLISHHRISSITSTAKWVLVIEKEAVFQTLTE 189
Query: 275 DRFYNRFPCIIVTAKGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSK 333
+ + IIVTAKG PD+ TR FL K+ L + D DP+GL I S + GS
Sbjct: 190 EALAD---TIIVTAKGFPDLMTRKFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFKYGSN 246
Query: 334 NMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGW 393
S++ + +++ LG P D + ++ L + ++DIK LL+ + +K P
Sbjct: 247 AYSHEPHS-QLRNLQLLG--PLYEDIFNKNQEFSLKLNKRDIKMITTLLQFEGFQKEPVV 303
Query: 394 VEELNLMVKTKQKAEIQALSSF 415
E+L M+ ++KAEIQA+ F
Sbjct: 304 REQLQRMLFIQKKAEIQAILEF 325
>sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Caenorhabditis elegans
GN=spo-11 PE=3 SV=1
Length = 425
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 139/266 (52%), Gaps = 6/266 (2%)
Query: 158 LSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV 217
L ++ L + TKR+L+Y ++ +Q D+ + + +L +R++LN+++ +G+
Sbjct: 99 LHQVYDLLENDKRSTKRELYYEHKAVYGNQKYLDSSIKSICELLNESRANLNILSCGRGI 158
Query: 218 VVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDR 276
+ G + F +N +ID + + + ++ S+A FIL+VEKD + +L ++
Sbjct: 159 IRGAITFLVENVGVIDARVQ----EVLITDALLFSNIISEADFILVVEKDTTFQKLMDEN 214
Query: 277 FYNRFP-CIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNM 335
F FP I+ T+KG PD+ATR L+ + + K P+ L D+DP+G++I Y G
Sbjct: 215 FQAMFPRGILATSKGYPDIATRNVLKMLSEKRKFPIYGLFDADPHGIEIYLTYKYGPTKE 274
Query: 336 SYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVE 395
+ P I+W+G+ P+D ++ I + LP+ D + ++
Sbjct: 275 FAEGRGAFVPTIEWIGLFPTDFHRFTIDQSQCLPLVRTDFVKIEKMIPRSIQLGEIVVTR 334
Query: 396 ELNLMVKTKQKAEIQALSSFGFQYLS 421
EL+ M++ K K E+++++ G +Y++
Sbjct: 335 ELDWMIQNKFKMELESINMCGQEYMA 360
>sp|C4VB43|SPO11_NOSCE Probable meiosis-specific protein SPO11 homolog OS=Nosema ceranae
(strain BRL01) GN=SPO11 PE=3 SV=1
Length = 271
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 34/247 (13%)
Query: 172 TKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMI 231
KR+++Y V +F+ Q+ D ++ D L CT+S L + KGV G + F N ++
Sbjct: 47 NKREIYYNSVSIFKKQSIVDMLIKDTCNKLKCTQSDLLISTTLKGVFYGNITFYKNNKLV 106
Query: 232 DCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQ 291
+ + G ++ P+++++ ++ L++EKD + + + N + + KG
Sbjct: 107 H---VNLKGTSLIPDMNQIDRIEYTQKKCLIIEKDTIFSKTVREYISN--DILFICGKGY 161
Query: 292 PDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLG 351
P T L + K L + + D DPYGL+I + Y P IK +G
Sbjct: 162 PCRNTLLLVNK----LNIRKYGIFDFDPYGLEICTKY----------------PSIKKIG 201
Query: 352 IRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQA 411
I D++ I +Q + + + DI+ LL K + EL M+K K EI+
Sbjct: 202 IDIKDIN--LIDKQHFMILNKYDIRKINTLL------KQKVYEIELFYMLKNNIKIEIEG 253
Query: 412 L-SSFGF 417
L S+ GF
Sbjct: 254 LFSAKGF 260
>sp|Q8SVS9|SPO11_ENCCU Probable meiosis-specific protein SPO11 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=SPO11 PE=3 SV=1
Length = 303
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 172 TKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLIFSDNG--D 229
+R++FY DV +F+ Q+ ++ +A L ++ L V KG+ +GRL F +
Sbjct: 51 NEREIFYMDVNVFRTQSVVRRLVSSIASELQISKHDLGVRNTLKGIFIGRLGFVRHHGLG 110
Query: 230 MIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPC----II 285
M++ + G G + P++ + ++ D ++VEKD R+A + R C +
Sbjct: 111 MVEMSSKG-GCPQLIPDMSDIAEVLCDYKKTVVVEKDTVLQRIASE--IEREKCLEEILF 167
Query: 286 VTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTP 345
V KG P T L L+ +E K V L D DP+G+ I +Y GSK TP
Sbjct: 168 VCGKGYPCKNTVLLLK--MIEHKTAVAGLFDLDPFGIHIFCIYKYGSKE---------TP 216
Query: 346 DIK 348
DI+
Sbjct: 217 DIR 219
>sp|P23179|SPO11_YEAST Meiosis-specific protein SPO11 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO11 PE=1 SV=1
Length = 398
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 15/205 (7%)
Query: 148 VRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCT-RS 206
+++ I + +L ++ + + T RD+FY++V+LFQ Q LD + + R
Sbjct: 105 LKRCAILLNLLKVVMEKLPLGKNTTVRDIFYSNVELFQRQANVVQWLDVIRFNFKLSPRK 164
Query: 207 SLNVIAAEKGVVVGRLIFSDNGDMIDC-TKMGMGGKAIPPNID-RVGDMQSDAMF----- 259
SLN+I A+KG+V +++ C + M + I P + Q DA+
Sbjct: 165 SLNIIPAQKGLVYSPFPIDIYDNILTCENEPKMQKQTIFPGKPCLIPFFQDDAVIKLGTT 224
Query: 260 ----ILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM---ELKLPVL 312
I++VEK+A + +L + +++T KG PD TRLFL+K++ +L
Sbjct: 225 SMCNIVIVEKEAVFTKLVNNYHKLSTNTMLITGKGFPDFLTRLFLKKLEQYCSKLISDCS 284
Query: 313 ALVDSDPYGLKILSVYGCGSKNMSY 337
D+DPYG+ I Y ++ +Y
Sbjct: 285 IFTDADPYGISIALNYTHSNERNAY 309
>sp|Q9D483|RPC3_MOUSE DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus
GN=Polr3c PE=2 SV=1
Length = 533
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 24/154 (15%)
Query: 203 CTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGK-----AIPPNIDRVGDMQSDA 257
C+R L ++ + + + ++ D G++I ++ + GK + DR+ + D
Sbjct: 79 CSRV-LRMLRYPRYIYTTKTLYGDTGELI-VEELLLNGKMTMSAVVKKVADRLTETMEDG 136
Query: 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVT---AKGQPDVATRLFLRKMKMELKLPVLAL 314
+ E A++RLA+ F R P + T +G P A P L +
Sbjct: 137 KTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSSDRGPPPPA--------------PTLVI 182
Query: 315 VDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIK 348
+ D Y + LS+ G G + S D P K
Sbjct: 183 NEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAK 216
>sp|Q2TBL4|RPC3_BOVIN DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus
GN=POLR3C PE=2 SV=1
Length = 533
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 28/169 (16%)
Query: 203 CTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGK-----AIPPNIDRVGDMQSDA 257
C R L ++ + + + ++SD G++I ++ + GK + DR+ + D
Sbjct: 79 CNRV-LRMLRYPRYIYTAKTLYSDTGELI-VEELLLNGKMTMSAVVKKVADRLTETMEDG 136
Query: 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVTAK---GQPDVATRLFLRKMKMELKLPVLAL 314
+ E ++RL + F R P + T G P A P L +
Sbjct: 137 KTMDYAEVSNTFVRLVDTHFVQRCPLVPATENSDTGPPPPA--------------PTLVV 182
Query: 315 VDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 363
+ D Y + LS+ G G + S D P K RP K P
Sbjct: 183 SEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAK----RPKQTTDNKEP 227
>sp|Q7V926|SAHH_PROMM Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=ahcY PE=3 SV=1
Length = 476
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 222 LIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAED-RFYNR 280
+I D GD +G ++ +D G+ + A+F + K LAED FY+R
Sbjct: 138 MILDDGGDATGLVMLGSKAESDSSVLDNPGNEEETALFASIRTK------LAEDSSFYSR 191
Query: 281 FPCII--VTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGC 330
I VT + VA RL+ + EL P + + DS K ++YGC
Sbjct: 192 IKSSIQGVTEETTTGVA-RLYQMQKSGELPFPAINVNDSVTKS-KFDNLYGC 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,152,098
Number of Sequences: 539616
Number of extensions: 5998901
Number of successful extensions: 19006
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 18643
Number of HSP's gapped (non-prelim): 271
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)