Query 040782
Match_columns 435
No_of_seqs 211 out of 434
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zbk_A Type II DNA topoisomera 100.0 2.9E-89 9.8E-94 701.3 15.3 351 81-435 5-388 (389)
2 2q2e_A Type II DNA topoisomera 100.0 1.3E-87 4.5E-92 685.9 14.6 348 84-435 11-369 (369)
3 1d3y_A DNA topoisomerase VI A 100.0 2.1E-84 7.2E-89 646.0 17.7 288 144-435 1-300 (301)
4 2fcj_A Small toprim domain pro 80.0 22 0.00074 30.1 11.2 68 258-330 5-72 (119)
5 1t6t_1 Putative protein; struc 60.3 9.4 0.00032 32.4 4.5 63 258-330 21-84 (118)
6 3nhm_A Response regulator; pro 53.1 34 0.0012 26.9 6.7 18 258-275 5-22 (133)
7 3lua_A Response regulator rece 49.7 59 0.002 25.8 7.7 49 282-331 51-103 (140)
8 3f6p_A Transcriptional regulat 49.6 75 0.0026 24.6 8.2 38 283-320 48-85 (120)
9 3n53_A Response regulator rece 39.7 45 0.0015 26.6 5.4 64 258-330 4-70 (140)
10 4e7p_A Response regulator; DNA 39.6 71 0.0024 25.8 6.7 18 258-275 21-38 (150)
11 3mm4_A Histidine kinase homolo 39.4 84 0.0029 27.5 7.6 19 257-275 61-79 (206)
12 3t8y_A CHEB, chemotaxis respon 39.3 1.2E+02 0.004 25.1 8.2 64 258-321 26-111 (164)
13 3cnb_A DNA-binding response re 38.7 1E+02 0.0034 24.2 7.4 17 259-275 10-26 (143)
14 3eqz_A Response regulator; str 37.8 1.1E+02 0.0038 23.6 7.5 61 259-319 5-85 (135)
15 3hdg_A Uncharacterized protein 37.4 62 0.0021 25.5 5.9 19 259-277 9-27 (137)
16 3h5i_A Response regulator/sens 37.3 77 0.0026 25.3 6.5 66 258-330 6-75 (140)
17 3grc_A Sensor protein, kinase; 36.8 42 0.0014 26.7 4.8 18 258-275 7-24 (140)
18 3kht_A Response regulator; PSI 35.7 90 0.0031 24.8 6.7 17 259-275 7-23 (144)
19 3lte_A Response regulator; str 35.6 1.2E+02 0.0042 23.4 7.4 18 258-275 7-24 (132)
20 2j48_A Two-component sensor ki 35.0 79 0.0027 23.6 5.9 17 259-275 3-19 (119)
21 3i42_A Response regulator rece 34.0 75 0.0025 24.6 5.8 64 259-330 5-71 (127)
22 2gkg_A Response regulator homo 33.4 75 0.0026 24.3 5.6 17 259-275 7-23 (127)
23 1k68_A Phytochrome response re 33.1 1.5E+02 0.0052 22.9 7.6 35 284-318 58-95 (140)
24 3kto_A Response regulator rece 32.8 1.8E+02 0.0061 22.8 8.2 73 258-331 7-102 (136)
25 3gt7_A Sensor protein; structu 32.7 1.6E+02 0.0056 23.8 8.0 18 258-275 8-25 (154)
26 3vxv_A Methyl-CPG-binding doma 31.9 21 0.00073 27.3 1.9 47 168-215 20-68 (69)
27 3heb_A Response regulator rece 31.0 1.4E+02 0.0048 23.9 7.2 17 259-275 6-22 (152)
28 2a9o_A Response regulator; ess 30.7 1.7E+02 0.0058 21.9 7.7 35 284-318 48-82 (120)
29 3eul_A Possible nitrate/nitrit 30.5 1.2E+02 0.004 24.5 6.6 19 257-275 15-33 (152)
30 2qvg_A Two component response 30.5 1.3E+02 0.0043 23.7 6.7 16 259-274 9-24 (143)
31 3kcn_A Adenylate cyclase homol 30.4 88 0.003 25.2 5.8 19 258-276 5-23 (151)
32 3jte_A Response regulator rece 30.3 1.1E+02 0.0038 24.2 6.3 34 284-317 52-86 (143)
33 2lse_A Four helix bundle prote 36.0 11 0.00038 29.6 0.0 85 73-179 11-95 (101)
34 1zh2_A KDP operon transcriptio 29.8 1.8E+02 0.0061 21.9 7.3 15 260-274 4-18 (121)
35 3eod_A Protein HNR; response r 29.1 1.3E+02 0.0045 23.2 6.5 18 258-275 8-25 (130)
36 2rdm_A Response regulator rece 28.4 1.2E+02 0.0042 23.4 6.2 17 259-275 7-23 (132)
37 2qxy_A Response regulator; reg 28.2 1.7E+02 0.0057 23.0 7.1 29 291-319 57-86 (142)
38 3gl9_A Response regulator; bet 26.9 2.2E+02 0.0074 21.9 7.8 16 259-274 4-19 (122)
39 2jba_A Phosphate regulon trans 26.6 1.5E+02 0.0052 22.6 6.4 16 259-274 4-19 (127)
40 2pln_A HP1043, response regula 26.6 2.1E+02 0.0072 22.2 7.4 40 291-331 68-108 (137)
41 3hv2_A Response regulator/HD d 26.3 1.2E+02 0.0042 24.4 6.0 21 258-278 15-35 (153)
42 1k66_A Phytochrome response re 26.2 1.8E+02 0.006 22.8 6.9 17 259-275 8-24 (149)
43 3cg4_A Response regulator rece 26.0 1.4E+02 0.0047 23.4 6.2 65 258-330 8-75 (142)
44 3f6c_A Positive transcription 25.6 1.3E+02 0.0045 23.3 5.9 19 259-277 3-21 (134)
45 3q9s_A DNA-binding response re 25.2 1.4E+02 0.0049 26.8 6.8 75 258-333 38-132 (249)
46 1xhf_A DYE resistance, aerobic 25.1 1.7E+02 0.0057 22.3 6.4 17 259-275 5-21 (123)
47 3hdv_A Response regulator; PSI 24.9 1.5E+02 0.005 23.1 6.1 19 258-276 8-26 (136)
48 3rhi_A DNA-binding protein HU; 24.7 1.2E+02 0.004 23.8 5.3 41 69-109 4-44 (93)
49 4dad_A Putative pilus assembly 24.4 2.1E+02 0.0071 22.6 7.0 19 256-274 19-37 (146)
50 3cz5_A Two-component response 24.2 2.7E+02 0.0093 22.1 8.5 35 284-318 54-89 (153)
51 2rjn_A Response regulator rece 24.0 1.3E+02 0.0045 24.2 5.8 17 259-275 9-25 (154)
52 1qkk_A DCTD, C4-dicarboxylate 23.3 2.1E+02 0.007 23.0 6.9 37 283-319 49-86 (155)
53 1mvo_A PHOP response regulator 22.9 2.2E+02 0.0077 21.9 6.8 18 258-275 4-21 (136)
54 2qr3_A Two-component system re 22.6 2.7E+02 0.0092 21.5 7.3 17 259-275 5-21 (140)
55 2ioj_A Hypothetical protein AF 22.3 55 0.0019 27.4 3.0 57 259-323 54-112 (139)
56 3b2n_A Uncharacterized protein 21.9 2.6E+02 0.0088 21.7 7.0 36 284-319 52-88 (133)
57 3h1g_A Chemotaxis protein CHEY 21.8 2.7E+02 0.0094 21.4 7.2 17 259-275 7-23 (129)
58 3t6k_A Response regulator rece 21.6 2.8E+02 0.0095 21.7 7.2 17 259-275 6-22 (136)
59 2zqe_A MUTS2 protein; alpha/be 21.5 1.4E+02 0.0048 23.1 5.0 48 270-320 22-70 (83)
60 1dbw_A Transcriptional regulat 21.3 2.8E+02 0.0094 21.2 8.9 16 259-274 5-20 (126)
61 1i3c_A Response regulator RCP1 20.8 3.2E+02 0.011 21.7 8.0 17 259-275 10-26 (149)
62 3hzh_A Chemotaxis response reg 20.7 3.3E+02 0.011 21.9 7.7 18 258-275 37-54 (157)
63 1srr_A SPO0F, sporulation resp 20.7 2.6E+02 0.0089 21.2 6.7 17 259-275 5-21 (124)
64 3p5m_A Enoyl-COA hydratase/iso 20.6 1.5E+02 0.0051 27.5 6.0 69 280-356 50-138 (255)
65 3snk_A Response regulator CHEY 20.6 82 0.0028 24.8 3.7 61 258-318 15-97 (135)
66 1w94_A MIL, probable BRIX-doma 20.5 54 0.0018 28.8 2.6 28 284-311 2-29 (156)
67 1owf_A IHF-alpha, integration 20.5 1.4E+02 0.0048 23.6 5.0 38 72-109 6-43 (99)
68 1qo0_D AMIR; binding protein, 20.3 3.8E+02 0.013 22.4 8.9 73 258-332 13-102 (196)
No 1
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=100.00 E-value=2.9e-89 Score=701.29 Aligned_cols=351 Identities=32% Similarity=0.544 Sum_probs=309.7
Q ss_pred hhcCChHHHHHHHHHHHHHHH----HHHHcCCCceEEeccCCCCCcccccCCCeEEecCCccccccCChhhHHHHHHHHH
Q 040782 81 VTDLSLSAVQSTIETLILQIA----RSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVK 156 (435)
Q Consensus 81 ~~~~~~~ev~~rIe~~~~~i~----~~i~~g~~~~~~ip~R~~~n~~~~~~~~~~~l~~~~~~r~~~~~~~~~k~a~~~~ 156 (435)
..+..+++++++||+++.+++ +++.+|+.|.+++|+|+.+|+.||++.+.+.+|++.+.|+|.+++++++|+++++
T Consensus 5 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~p~r~~~n~~~d~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~ 84 (389)
T 2zbk_A 5 FISKVDKEARRKAANILRDKFLNLVEQLKKGEPLVMEIPMRTLSNAIYDEKRKLLLLGEKKLRRNFLDLNEAKRFMQTVL 84 (389)
T ss_dssp -----CCCHHHHHHHHTTHHHHHHHCCCCCSSCCEECCCC---------------------CCEETTSSTTHHHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEeccccCcCceeeccccceEEecCceeEEecCCHHHHHHHHHHHH
Confidence 345567889999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccceeeecCCcc-----------------ccCchHHHHHHHHHHHHHhcCCCCccceEecCCceEE
Q 040782 157 ILSLIHQLCLRNIHVTKRDLFYTDVK-----------------LFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVV 219 (435)
Q Consensus 157 vl~~i~~ll~~~~~~TkRdiYY~~~~-----------------lF~~Q~~vd~~I~di~~~l~~~R~~L~I~as~KGlv~ 219 (435)
|+++||++|.+|+++|+|||||++++ +|++|++||++|+|||++||++|++|||+|++||+|+
T Consensus 85 vl~~i~~~l~~~~~~T~RdiYY~~~~~~~~~~~~~~~~~~~~~~F~~Q~~~d~~I~di~~~l~~~R~~L~I~a~~kGlv~ 164 (389)
T 2zbk_A 85 MASIIYDALVSDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEENTWDEQKESDSVIVDIEVFTSLLREEMLILSKEKGKVV 164 (389)
T ss_dssp HTHHHHHHHHTTCCCCHHHHHSCCSCSCCSCCCC-------CCSCCSHHHHHHHHHHHHHHHSCCHHHHTCCCCCCCCBE
T ss_pred HHHHHHHHHHcCCccchHHhhccCcccccccccccccccchhhhcCCHHHHHHHHHHHHHHHCCChhhcceEecCCcEEE
Confidence 99999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEEEEeeCCceEEeeccCCCccccCCCcccccccccCccEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHH
Q 040782 220 GRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLF 299 (435)
Q Consensus 220 G~l~~~~~g~~id~~~~~~~g~~Ip~~i~~i~~i~~~a~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~f 299 (435)
|+++|..+|.+|||+.++.+|++||++++.++.+.+++++||||||+|+|++|++++|+.+.+|||||||||||++||+|
T Consensus 165 G~l~i~~~~~~id~~~~g~~g~~Ip~~~~~i~~i~~~a~~VLvVEK~avF~rL~~~~~~~~~~~ilIt~kG~Pd~aTR~f 244 (389)
T 2zbk_A 165 GNLRIRSGNDVIDLSKTGHGAYAIEPTPDLIDFIDVDAEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRF 244 (389)
T ss_dssp ESEEEEETTEEEESSCCTTCCBCCCSCCSSEEEEEECCSCEEEESCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHHHH
T ss_pred eeeEEEeCCcEEEeecCCCCceeCCccHHHhhccccCccEEEEEecHHHHHHHHHhCcCccCCEEEEECCCCCCHHHHHH
Confidence 99999989999999998889999999999999989999999999999999999999999889999999999999999999
Q ss_pred HHHHhhccCCcEEEEecCCchhhHHHHHHhcCCcccccccCCCCCCCceecccCcccccccCCCcccccCCCHHH-----
Q 040782 300 LRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQD----- 374 (435)
Q Consensus 300 L~~L~~~~~lPv~~LvD~DP~Gi~I~~tYk~GS~~~a~~s~~l~~P~l~wLGv~~sDl~~y~~~~~~~lpLt~rD----- 374 (435)
|++|++++++|||+|+|+||||++|+++|+|||.+++|+++.+++|+++|+||+++|+.+|.+|. .|||++|
T Consensus 245 L~~L~~~~~lpv~~l~D~DP~Gi~I~~tyk~GS~~~a~~~~~l~~P~l~~lG~~~~di~~~~~~~---~~Lt~~Dr~~~~ 321 (389)
T 2zbk_A 245 VRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGDIFGNSRKK---PYLSEAERKNYI 321 (389)
T ss_dssp HHHHHHHSCCCEEEECCSSHHHHHHHHHHTSCSCC-----CCCSCSSCEECCCCHHHHHCCSSSC---CSSCHHHHHHHC
T ss_pred HHHHHHhcCCCEEEEecCChhhhhhHHHHhhcchhhhhhhhcccCCceEEcCCcHHHHHhccccc---ccCChhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 6999999
Q ss_pred HHHHHHhhccc-------cccCChHHHHHHHHHHHcCCeeeeehhhhcCcccchhchHHhhhccCCCC
Q 040782 375 IKTGKDLLEED-------FVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435 (435)
Q Consensus 375 ~k~~~~lL~~~-------~~~~~~~w~~EL~~ML~~~~KaEiEaL~~~g~~fl~~~YLp~Kl~~~~~i 435 (435)
+++++++|++| +++ ++.|++||++|++.|+|+|||||+++|++|++++|||+||+++|||
T Consensus 322 ~k~l~~ll~~~~~~~~~~~~~-~~~w~~el~~Ml~~~~KaE~Eal~~~g~~fl~~~yl~~Ki~~~~~i 388 (389)
T 2zbk_A 322 IKAKDADIKRAEEIKNYEWFK-TKAWQEEINTFLQRKAKLEIEAMASKGLKFLAFQYIPEKITNKDYI 388 (389)
T ss_dssp EECCHHHHHHHHHHTTSTTTT-TTTTTHHHHHHHHHCEECCHHHHHTTCTHHHHHTHHHHHHHHTCSB
T ss_pred HHHHHHHHhchhhcccchhcc-CHHHHHHHHHHHHhCceeeeHHhhhcCchhhHHHHHHHHHhcCCCc
Confidence 89999999998 774 6789999999999999999999999999999999999999999997
No 2
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=1.3e-87 Score=685.91 Aligned_cols=348 Identities=27% Similarity=0.447 Sum_probs=295.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCceEEeccCCCCCcccccCCCeEEecCCccccccCChhhHHHHHHHHHHHHHH-H
Q 040782 84 LSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLI-H 162 (435)
Q Consensus 84 ~~~~ev~~rIe~~~~~i~~~i~~g~~~~~~ip~R~~~n~~~~~~~~~~~l~~~~~~r~~~~~~~~~k~a~~~~vl~~i-~ 162 (435)
..+++++++||+++..++++|.+|+.|.+++|+|+.+|+.||++.+.+.++++.+.|+|.+.+++++|+++++||+++ |
T Consensus 11 ~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~i~~r~~~n~~~d~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~vl~~i~~ 90 (369)
T 2q2e_A 11 KGDALAREKLLEIAEKIYNQFEEEVVPSVSLPSRTKANLEYSDESDVWVYGDRESERSAKTVKGAFQLLKTTYATDFLIN 90 (369)
T ss_dssp ----CCCHHHHHHHHHHHHTTHHHHTTSCCCCC------------------------CCSSTHHHHHHHCC-HHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCeEEeeccccCceeecccCCeeeecCceeeEecCCHHHHHHHHHHHHHHHHHHH
Confidence 356679999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHhhcCCcccceeeecCCc----cccCchHHHHHHHHHHHHHhcCCCCccceEecCCc-eEEEEEEEee----CCceEEe
Q 040782 163 QLCLRNIHVTKRDLFYTDV----KLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKG-VVVGRLIFSD----NGDMIDC 233 (435)
Q Consensus 163 ~ll~~~~~~TkRdiYY~~~----~lF~~Q~~vd~~I~di~~~l~~~R~~L~I~as~KG-lv~G~l~~~~----~g~~id~ 233 (435)
+++.+|+++|+|||||+++ ++|++|++||++|+|||++||++|++|||+|++|| +|+|+++|.. +|.+|||
T Consensus 91 ~~l~~~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~I~di~~~l~~~R~~L~I~a~~kG~lv~G~l~i~~~~~~~~~~id~ 170 (369)
T 2q2e_A 91 EHLARNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPEEDGATMFGPIEITEQTKRGERNIHC 170 (369)
T ss_dssp TSSTTCCCEEHHHHHHHTSSSTTSCCSCTTTHHHHHHHHHHHSCCCGGGGTEECSSCCCCEECSCCCCCCSSCC----CC
T ss_pred HHHhcCCccchHHhhccCcccchhhccCHHHHHHHHHHHHHHHCCCHHHcceeccCCceEEEEeEEEEEEecCCCcEEEe
Confidence 9999999999999999999 99999999999999999999999999999999999 9999999975 4789999
Q ss_pred ec-cCCCccccCCCcccccccccCccEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEE
Q 040782 234 TK-MGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVL 312 (435)
Q Consensus 234 ~~-~~~~g~~Ip~~i~~i~~i~~~a~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~ 312 (435)
+. +|.+|++||++++.++.+.+++++||||||+|+|++|++++|+++.+|||||||||||++||+||++|++++++|||
T Consensus 171 ~~~~g~~g~~Ip~~~~~i~~i~~~~~~VlvVEk~avF~~L~~~~~~~~~~~ilIt~kG~Pd~atR~~L~~L~~~~~~pv~ 250 (369)
T 2q2e_A 171 QKDVGEGGYQIPFNVENIEFQKHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVA 250 (369)
T ss_dssp CC-CCSSCCCCCSCSSSCCCCCCCCCCEEEECCTTHHHHHHHSCCTTTTCCCEEECCSSCCHHHHHHHHHHTTSSCCCEE
T ss_pred cccCCCCCeeCCccHHHhhcccCCccEEEEEechHHHHHHHHhccCccCCEEEEECCCCCCHHHHHHHHHHHHhcCCcEE
Confidence 98 88899999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEecCCchhhHHHHHHhcCCcccccccCCCCCCCceecccCcccccccCCCcccccCCCHHHHHHHHHhhccccccCChH
Q 040782 313 ALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPG 392 (435)
Q Consensus 313 ~LvD~DP~Gi~I~~tYk~GS~~~a~~s~~l~~P~l~wLGv~~sDl~~y~~~~~~~lpLt~rD~k~~~~lL~~~~~~~~~~ 392 (435)
+|+|+||||++|+++|+|||.+++|+++.+++|+++|+||+++|+.+|.++. .|||++|+++++++|++|+++ ++.
T Consensus 251 ~l~D~Dp~Gi~I~~tyk~GS~~~~~~~~~l~~p~~~~lgm~~~d~~~~~~~~---~~Lt~~D~k~l~~ll~~~~~~-~~~ 326 (369)
T 2q2e_A 251 VFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELST---DKLTEQDVSALRSELSDPRFE-SDY 326 (369)
T ss_dssp EECCSSHHHHTTTHHHHSCC--------CCCCTTCBCCSSCTTTTTSSCCCC---CCCCHHHHHHHTTTTSSCSSC-CTT
T ss_pred EEecCChhHHHHHHHHhccchhhhhhhcccCCCccEECCCCHHHHHhccccc---CCCCHHHHHHHHHHhhCcccC-CHH
Confidence 9999999999999999999999999999999999999999999999988754 699999999999999999986 678
Q ss_pred HHHHHHHHHHcCCeeeeehhhhcCcccchhchHHhhhccCCCC
Q 040782 393 WVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 435 (435)
Q Consensus 393 w~~EL~~ML~~~~KaEiEaL~~~g~~fl~~~YLp~Kl~~~~~i 435 (435)
|++|+++|++.|+|+|||||+++|++|++++|||+||++++||
T Consensus 327 w~~el~~ml~~~~K~EqEal~~~g~~~~~~~yl~~Ki~~~~~~ 369 (369)
T 2q2e_A 327 WKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLKEMGMI 369 (369)
T ss_dssp TTHHHHHHHHHCCCCCSGGGGGGCTTSTTTTHHHHHHHSCC--
T ss_pred HHHHHHHHHHhCcEeeehhhhhcCchhhHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999999999999999999997
No 3
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=100.00 E-value=2.1e-84 Score=645.98 Aligned_cols=288 Identities=34% Similarity=0.634 Sum_probs=264.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhcCCcccceeeecCCc----cccCchHHHHHHHHHHHHHhcCCCCccceEecCCc-eE
Q 040782 144 SLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDV----KLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKG-VV 218 (435)
Q Consensus 144 ~~~~~~k~a~~~~vl~~i~~ll~~~~~~TkRdiYY~~~----~lF~~Q~~vd~~I~di~~~l~~~R~~L~I~as~KG-lv 218 (435)
|++++++|+++++||+++|++|.+|+++|+|||||+++ ++|++|++||++|+|||++||++|++|||+|++|| +|
T Consensus 1 ~~~~~~~~~~~~~vl~~i~~~l~~~~~~T~RdiYY~~~~~~~~~F~~Q~~~d~~i~di~~~l~~~R~~L~i~a~~kG~lv 80 (301)
T 1d3y_A 1 TVNQAKIFAQTTKMLEFAKQLLETDDFSTLREAYYVSKNWGEARFDDQQASNNVIEDLEAALGVLREHLGFIPEEDGSSV 80 (301)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHHGGGSGGGCCSSHHHHHHHHHHHHHHHTCCGGGGTEECSSCCCEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhccCCccchhhccCHHHHHHHHHHHHHHHCCCHHHCCeeeCCCceEE
Confidence 46789999999999999999999999999999999998 89999999999999999999999999999999999 99
Q ss_pred EEEEEEee----CCceEEeeccCCCccccCCCcccccccccCccEEEEEechhHHHHHHHccccCCCCeEEEecCCcCCh
Q 040782 219 VGRLIFSD----NGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDV 294 (435)
Q Consensus 219 ~G~l~~~~----~g~~id~~~~~~~g~~Ip~~i~~i~~i~~~a~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~ 294 (435)
+|+++|.. ++..|||+.++.+|++||++++.+++ .++|+|||||||+|+|++|++++|+++++|||||||||||+
T Consensus 81 ~G~l~i~~~~~~~~~~id~~~~~~~g~~Ip~~~~~i~~-~~~a~~VLvVEK~avF~rL~~~~~~~~~~~ilIt~kGyPd~ 159 (301)
T 1d3y_A 81 VGPLKIIEETPEGELVVDCTKLGTGAYNIPNDVTKLNL-ETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPAR 159 (301)
T ss_dssp ESSCEEEEEETTEEEEEETTSCTTSEEECCSCCTTCEE-ECCCSEEEEESCHHHHHHHHHTTHHHHTTEEEEECCSSCCH
T ss_pred EeeeEEEEeecCCCcEEEeecCCCCceecCccHHhhee-ccCccEEEEEechHHHHHHHHhcccccCCEEEEECCCCCCH
Confidence 99999974 36799999988899999999999888 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCchhh-HHHHHHhcCCcccccccCCCCCCCceecccCcccccccCCCcccccCCCHH
Q 040782 295 ATRLFLRKMKMELKLPVLALVDSDPYGL-KILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQ 373 (435)
Q Consensus 295 aTR~fL~~L~~~~~lPv~~LvD~DP~Gi-~I~~tYk~GS~~~a~~s~~l~~P~l~wLGv~~sDl~~y~~~~~~~lpLt~r 373 (435)
+||+||++|++++++|||+|||+||||+ +||++|||||.+++|+++.+++|+++|+||+|+|+.+|++| .+|||++
T Consensus 160 aTR~fl~~L~~~~~lpv~~l~D~DP~G~~~I~~tyk~GS~~~~~~~~~l~~p~~~wlGv~~sdi~~~~~~---~~~Lt~~ 236 (301)
T 1d3y_A 160 ATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLP---THPLKEQ 236 (301)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC---------CTTCCTTCEEEESCHHHHHHTTCC---CEECCHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecCChHHHHHHHHHHHhCchhhccccccccCCccEEcCCCHHHHHhcccc---cCcCCHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999876 4699999
Q ss_pred HHHHHHHhhccccccC-ChHHHHHHHHHHHcCCeeeeehhhhcCcccchhchHHhhhccCC-CC
Q 040782 374 DIKTGKDLLEEDFVKK-NPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKD-WL 435 (435)
Q Consensus 374 D~k~~~~lL~~~~~~~-~~~w~~EL~~ML~~~~KaEiEaL~~~g~~fl~~~YLp~Kl~~~~-~i 435 (435)
|++++++||++|++.. .++|++||++|++.|+|||||||+++|++|++++|||+||++++ ||
T Consensus 237 D~~~l~~ll~~~~~~~~~~~w~~el~~ml~~~~KaEieal~~~g~~f~~~~yl~~Ki~~~~~~~ 300 (301)
T 1d3y_A 237 DIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIKDESTWL 300 (301)
T ss_dssp HHHHHHHHHHHCHHHHTCHHHHHHHHHHHHHTEEBCGGGGGGGCTTHHHHTHHHHHHHCGGGCC
T ss_pred HHHHHHHHhhCccccCcHHHHHHHHHHHHHhCCEEEEehhhhcCccchHHHHHHHHHhcCCcCC
Confidence 9999999999998852 23599999999999999999999999999999999999999999 97
No 4
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=79.97 E-value=22 Score=30.13 Aligned_cols=68 Identities=22% Similarity=0.167 Sum_probs=48.6
Q ss_pred cEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCCchhhHHHHHHhc
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGC 330 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~DP~Gi~I~~tYk~ 330 (435)
+-|+|||=..=-.+|.+-+-. ++=+|++.|+-+..+...+..+.. .=.|++|+|+|..|-.|......
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~---~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD~D~~GekIRk~i~~ 72 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNE---PVVIVCTNGTISDARLEELADELE--GYDVYLLADADEAGEKLRRQFRR 72 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSS---CCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECCSSHHHHHHHHHHHH
T ss_pred CeEEEEechHHHHHHHHhcCC---CCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEECCCccHHHHHHHHHH
Confidence 568999988877787665311 345666677755555555655553 34699999999999999997753
No 5
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=60.32 E-value=9.4 Score=32.37 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=43.8
Q ss_pred cEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCc-EEEEecCCchhhHHHHHHhc
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLP-VLALVDSDPYGLKILSVYGC 330 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lP-v~~LvD~DP~Gi~I~~tYk~ 330 (435)
+.|+|||=-.-=.+|.+-++. + +|.+.|.| + -..++.|+.. -. |+.|+|+|..|-.|......
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~~---~--iI~t~Gta-l--~~~i~~l~~~--~~~VIIltD~D~aGe~ir~~i~~ 84 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSIK---N--VIDLSGKR-Y--ADVVDMLEGK--WEKVILLFDLDTHGERINQKMKE 84 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTCC---C--EEECTTSC-H--HHHHHHHTTT--CSEEEECCCSSHHHHHHHHHHHH
T ss_pred CcEEEEEChHHHHHHHHhCcC---c--EEEECCCc-H--HHHHHHHHhC--CCEEEEEECCChhHHHHHHHHHH
Confidence 558999987777777665544 2 44445664 2 2356666432 45 99999999999999988764
No 6
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=53.14 E-value=34 Score=26.91 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=12.2
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
..|||||.+..+...+..
T Consensus 5 ~~ilivdd~~~~~~~l~~ 22 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRL 22 (133)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHH
Confidence 357888887777666554
No 7
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=49.71 E-value=59 Score=25.83 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=27.8
Q ss_pred CeEEEecCCcC-ChHHHHHHHHHhh---ccCCcEEEEecCCchhhHHHHHHhcC
Q 040782 282 PCIIVTAKGQP-DVATRLFLRKMKM---ELKLPVLALVDSDPYGLKILSVYGCG 331 (435)
Q Consensus 282 ~~ILITgKGyP-D~aTR~fL~~L~~---~~~lPv~~LvD~DP~Gi~I~~tYk~G 331 (435)
+-++|.--..| +...-.|++.|.. ..++||+.++..+... .+...++.|
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~-~~~~~~~~g 103 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPG-YRHAALKFK 103 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHH-HHHHHHHSC
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHH-HHHHHHHcC
Confidence 34566666666 6666667777665 2457777666654333 233444444
No 8
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=49.61 E-value=75 Score=24.61 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=21.5
Q ss_pred eEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCCch
Q 040782 283 CIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320 (435)
Q Consensus 283 ~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~DP~ 320 (435)
-++|.--..|+...-.+++.+....++|++.++..+..
T Consensus 48 dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~ 85 (120)
T 3f6p_A 48 DLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSE 85 (120)
T ss_dssp SEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCh
Confidence 35555555666666666666655455666666554443
No 9
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=39.67 E-value=45 Score=26.58 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=32.4
Q ss_pred cEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCC---chhhHHHHHHhc
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD---PYGLKILSVYGC 330 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~D---P~Gi~I~~tYk~ 330 (435)
..|||||.+..+...+..-+... +.+.+.. .....+..+.+. -|=++++|.+ ..|+.++...+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~--~~v~~~~-----~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE--YLVIESK-----NEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT--SEEEEES-----SHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc--ceEEEeC-----CHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 35888898888877776544332 2222221 123344444432 2445667754 346666666654
No 10
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=39.65 E-value=71 Score=25.82 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=13.0
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
-.|||||.+..+...+..
T Consensus 21 ~~iLivdd~~~~~~~l~~ 38 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQ 38 (150)
T ss_dssp EEEEEECSCHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHH
Confidence 358888888877766654
No 11
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=39.38 E-value=84 Score=27.47 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=14.3
Q ss_pred ccEEEEEechhHHHHHHHc
Q 040782 257 AMFILLVEKDAAYIRLAED 275 (435)
Q Consensus 257 a~~VLvVEKeAvF~rL~~~ 275 (435)
...|||||.+..+..++..
T Consensus 61 ~~~ILiVdDd~~~~~~l~~ 79 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATG 79 (206)
T ss_dssp TCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 3579999999887766543
No 12
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=39.25 E-value=1.2e+02 Score=25.13 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=34.8
Q ss_pred cEEEEEechhHHHHHHHccccCCC----------------------CeEEEecCCcCChHHHHHHHHHhhccCCcEEEEe
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNRF----------------------PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 315 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~~----------------------~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~Lv 315 (435)
-.|||||.+..+...++.-+.... +-++|.--..|+...-.+++.|....++|++.++
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s 105 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVS 105 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEe
Confidence 468888888877666544222111 1244444555555555566665554445665555
Q ss_pred cCCchh
Q 040782 316 DSDPYG 321 (435)
Q Consensus 316 D~DP~G 321 (435)
..+..+
T Consensus 106 ~~~~~~ 111 (164)
T 3t8y_A 106 SLTEEG 111 (164)
T ss_dssp SSCCTT
T ss_pred cCCccc
Confidence 544433
No 13
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=38.72 E-value=1e+02 Score=24.20 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=10.9
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 10 ~iLivdd~~~~~~~l~~ 26 (143)
T 3cnb_A 10 SILIIEDDKEFADMLTQ 26 (143)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHH
Confidence 47777777766555443
No 14
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=37.81 E-value=1.1e+02 Score=23.64 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=32.2
Q ss_pred EEEEEechhHHHHHHHccccCCC-------------------CeEEEecCCcCChHHHHHHHHHhhc-cCCcEEEEecCC
Q 040782 259 FILLVEKDAAYIRLAEDRFYNRF-------------------PCIIVTAKGQPDVATRLFLRKMKME-LKLPVLALVDSD 318 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~~~~~~~-------------------~~ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~LvD~D 318 (435)
.||+||.+..+...+..-+...+ +-++|.--..|+...-.+++.|.+. ..+|++.+++.+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (135)
T 3eqz_A 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYD 84 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred eEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEecc
Confidence 57888888777666544222211 3345555555555555555555543 345555555444
Q ss_pred c
Q 040782 319 P 319 (435)
Q Consensus 319 P 319 (435)
.
T Consensus 85 ~ 85 (135)
T 3eqz_A 85 S 85 (135)
T ss_dssp H
T ss_pred c
Confidence 3
No 15
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=37.39 E-value=62 Score=25.52 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=13.3
Q ss_pred EEEEEechhHHHHHHHccc
Q 040782 259 FILLVEKDAAYIRLAEDRF 277 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~~~ 277 (435)
.||+||.+..+...++.-+
T Consensus 9 ~ilivdd~~~~~~~l~~~L 27 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTII 27 (137)
T ss_dssp CEEEECSCHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHH
Confidence 5788888887766665433
No 16
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=37.31 E-value=77 Score=25.25 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=35.0
Q ss_pred cEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCC----chhhHHHHHHhc
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD----PYGLKILSVYGC 330 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~D----P~Gi~I~~tYk~ 330 (435)
..|||||.+..+...+..-+... .+-+++.. .....+..+... .-|=++++|.+ ..|+.++...+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~-----~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKY-GYTVEIAL-----TGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQ 75 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEEEES-----SHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHc-CCEEEEec-----ChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHh
Confidence 46888998888777665533321 22222211 123344455431 12446677753 457777776654
No 17
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=36.78 E-value=42 Score=26.68 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=13.0
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
..|||||.+..+...+..
T Consensus 7 ~~iLivdd~~~~~~~l~~ 24 (140)
T 3grc_A 7 PRILICEDDPDIARLLNL 24 (140)
T ss_dssp SEEEEECSCHHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHH
Confidence 468888888877766654
No 18
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.73 E-value=90 Score=24.81 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=10.4
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.|||||.+..+...+..
T Consensus 7 ~ILivdd~~~~~~~l~~ 23 (144)
T 3kht_A 7 RVLVVEDNPDDIALIRR 23 (144)
T ss_dssp EEEEECCCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHH
Confidence 46777777666555443
No 19
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.60 E-value=1.2e+02 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=12.1
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
..||+||.+..+...+..
T Consensus 7 ~~ilivdd~~~~~~~l~~ 24 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIER 24 (132)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHH
Confidence 457888887776665544
No 20
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=34.98 E-value=79 Score=23.57 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=10.7
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 3 ~iliv~~~~~~~~~l~~ 19 (119)
T 2j48_A 3 HILLLEEEDEAATVVCE 19 (119)
T ss_dssp EEEEECCCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHH
Confidence 46777777766555543
No 21
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.03 E-value=75 Score=24.63 Aligned_cols=64 Identities=16% Similarity=0.042 Sum_probs=32.9
Q ss_pred EEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecC---CchhhHHHHHHhc
Q 040782 259 FILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDS---DPYGLKILSVYGC 330 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~---DP~Gi~I~~tYk~ 330 (435)
.|||||.+..+...+..-+.. ..+-+.+.. .....+..+.+. -|=++++|. |..|+.++...+.
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~-----~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEM-LGFQADYVM-----SGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTEEEEEES-----SHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHH-cCCCEEEEC-----CHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 578888888777666543322 122222211 223444444432 244566664 3456666666654
No 22
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=33.45 E-value=75 Score=24.26 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=12.2
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 7 ~ilivdd~~~~~~~l~~ 23 (127)
T 2gkg_A 7 KILIVESDTALSATLRS 23 (127)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 57888888877666554
No 23
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=33.11 E-value=1.5e+02 Score=22.85 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=16.3
Q ss_pred EEEecCCcCChHHHHHHHHHhhc---cCCcEEEEecCC
Q 040782 284 IIVTAKGQPDVATRLFLRKMKME---LKLPVLALVDSD 318 (435)
Q Consensus 284 ILITgKGyPD~aTR~fL~~L~~~---~~lPv~~LvD~D 318 (435)
++|..-..|+...-.+++.|... .++|++.+++.+
T Consensus 58 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 58 LILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred EEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 44444444444444555555443 245555555443
No 24
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=32.77 E-value=1.8e+02 Score=22.81 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=41.7
Q ss_pred cEEEEEechhHHHHHHHccccC--------------------CCCeEEEecCCcCC--hHHHHHHHHHhhc-cCCcEEEE
Q 040782 258 MFILLVEKDAAYIRLAEDRFYN--------------------RFPCIIVTAKGQPD--VATRLFLRKMKME-LKLPVLAL 314 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~--------------------~~~~ILITgKGyPD--~aTR~fL~~L~~~-~~lPv~~L 314 (435)
..|||||.+..+...+..-+.. ..+-++|.--..|+ ...-.+++.|... .++|++.+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEE
Confidence 3578888877766655432211 11345666666677 6777777777664 46777777
Q ss_pred ecCCchhhHHHHHHhcC
Q 040782 315 VDSDPYGLKILSVYGCG 331 (435)
Q Consensus 315 vD~DP~Gi~I~~tYk~G 331 (435)
+..+.... +...++.|
T Consensus 87 s~~~~~~~-~~~~~~~g 102 (136)
T 3kto_A 87 ASSSDIPT-AVRAMRAS 102 (136)
T ss_dssp ESSCCHHH-HHHHHHTT
T ss_pred EcCCCHHH-HHHHHHcC
Confidence 76554432 33334444
No 25
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.66 E-value=1.6e+02 Score=23.76 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=11.9
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
..|||||.+..+...+..
T Consensus 8 ~~ILivdd~~~~~~~l~~ 25 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKH 25 (154)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHH
Confidence 457778877776665544
No 26
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=31.87 E-value=21 Score=27.26 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=31.4
Q ss_pred CCcccceeeecCCc--cccCchHHHHHHHHHHHHHhcCCCCccceEecCC
Q 040782 168 NIHVTKRDLFYTDV--KLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEK 215 (435)
Q Consensus 168 ~~~~TkRdiYY~~~--~lF~~Q~~vd~~I~di~~~l~~~R~~L~I~as~K 215 (435)
|....+.|+||.++ .-|++-.++.+.+..--.. +++.+++.-...+|
T Consensus 20 G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~-~l~~~~FdF~~p~~ 68 (69)
T 3vxv_A 20 GKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET-FLKPEDFNFTVLPK 68 (69)
T ss_dssp STTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC-CCCGGGSCCCCCCC
T ss_pred CCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC-CCCHHHcceeCCCC
Confidence 44556889999986 4689999998888775322 34555555444333
No 27
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.02 E-value=1.4e+02 Score=23.91 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=10.6
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.|||||.+..+...++.
T Consensus 6 ~ILivddd~~~~~~l~~ 22 (152)
T 3heb_A 6 TIVMIEDDLGHARLIEK 22 (152)
T ss_dssp EEEEECCCHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 46777777666555543
No 28
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=30.67 E-value=1.7e+02 Score=21.95 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=17.6
Q ss_pred EEEecCCcCChHHHHHHHHHhhccCCcEEEEecCC
Q 040782 284 IIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD 318 (435)
Q Consensus 284 ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~D 318 (435)
++|..-..|+..--.+++.+.+..++|++.++..+
T Consensus 48 lvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 48 IIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred EEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 44444445554444555555544455555555443
No 29
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=30.52 E-value=1.2e+02 Score=24.46 Aligned_cols=19 Identities=0% Similarity=0.015 Sum_probs=12.7
Q ss_pred ccEEEEEechhHHHHHHHc
Q 040782 257 AMFILLVEKDAAYIRLAED 275 (435)
Q Consensus 257 a~~VLvVEKeAvF~rL~~~ 275 (435)
...||+||.+..+...+..
T Consensus 15 ~~~iLivdd~~~~~~~l~~ 33 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVR 33 (152)
T ss_dssp CEEEEEECSSHHHHHHHHH
T ss_pred eEEEEEEcCCHHHHHHHHH
Confidence 3568888888776665543
No 30
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=30.50 E-value=1.3e+02 Score=23.74 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=10.1
Q ss_pred EEEEEechhHHHHHHH
Q 040782 259 FILLVEKDAAYIRLAE 274 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~ 274 (435)
.||+||.+..+...+.
T Consensus 9 ~ILivdd~~~~~~~l~ 24 (143)
T 2qvg_A 9 DILYLEDDEVDIQSVE 24 (143)
T ss_dssp SEEEECCCHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHH
Confidence 4677777776655443
No 31
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=30.41 E-value=88 Score=25.25 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.2
Q ss_pred cEEEEEechhHHHHHHHcc
Q 040782 258 MFILLVEKDAAYIRLAEDR 276 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~ 276 (435)
..|||||.+..+...+..-
T Consensus 5 ~~ILivdd~~~~~~~l~~~ 23 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRN 23 (151)
T ss_dssp CEEEEECSCHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHH
Confidence 3577777777766665543
No 32
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=30.33 E-value=1.1e+02 Score=24.17 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=15.3
Q ss_pred EEEecCCcCChHHHHHHHHHhhc-cCCcEEEEecC
Q 040782 284 IIVTAKGQPDVATRLFLRKMKME-LKLPVLALVDS 317 (435)
Q Consensus 284 ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~LvD~ 317 (435)
++|..-..|+...-.|++.|... .++||+.+++.
T Consensus 52 lvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 52 VVITDMKMPKLSGMDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECT
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECC
Confidence 34444444444444455444432 23455444443
No 33
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.03 E-value=11 Score=29.59 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=55.3
Q ss_pred chhhhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCCceEEeccCCCCCcccccCCCeEEecCCccccccCChhhHHHHH
Q 040782 73 SLSATCREVTDLSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKST 152 (435)
Q Consensus 73 ~~~~~~~~~~~~~~~ev~~rIe~~~~~i~~~i~~g~~~~~~ip~R~~~n~~~~~~~~~~~l~~~~~~r~~~~~~~~~k~a 152 (435)
-++.-.-++.+-.++++.+|||.++.++-+.+..|+.-.+--.-|.--.+.|- +. + -+
T Consensus 11 klekildevtdgapdearerieklakdvkdeleegdaknmiekfrdemeqmyk---------da--------p-----na 68 (101)
T 2lse_A 11 KLEKILDEVTDGAPDEARERIEKLAKDVKDELEEGDAKNMIEKFRDEMEQMYK---------DA--------P-----NA 68 (101)
Confidence 34455667778888999999999999999999998663222222322222221 11 1 13
Q ss_pred HHHHHHHHHHHHhhcCCcccceeeecC
Q 040782 153 ITVKILSLIHQLCLRNIHVTKRDLFYT 179 (435)
Q Consensus 153 ~~~~vl~~i~~ll~~~~~~TkRdiYY~ 179 (435)
.+-.+|+-|..+|..-.+...|.-|..
T Consensus 69 vmeqlleeiekllkkagslvprgsyle 95 (101)
T 2lse_A 69 VMEQLLEEIEKLLKKAGSLVPRGSYLE 95 (101)
Confidence 566777778777777777777776654
No 34
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=29.81 E-value=1.8e+02 Score=21.88 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=7.9
Q ss_pred EEEEechhHHHHHHH
Q 040782 260 ILLVEKDAAYIRLAE 274 (435)
Q Consensus 260 VLvVEKeAvF~rL~~ 274 (435)
||+||.+..+...+.
T Consensus 4 ilivdd~~~~~~~l~ 18 (121)
T 1zh2_A 4 VLIVEDEQAIRRFLR 18 (121)
T ss_dssp EEEECSCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHH
Confidence 556666655544443
No 35
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=29.09 E-value=1.3e+02 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.1
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
..||+||.+..+...+..
T Consensus 8 ~~ilivdd~~~~~~~l~~ 25 (130)
T 3eod_A 8 KQILIVEDEQVFRSLLDS 25 (130)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHH
Confidence 468888888877666554
No 36
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.39 E-value=1.2e+02 Score=23.37 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=10.7
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 7 ~ilivdd~~~~~~~l~~ 23 (132)
T 2rdm_A 7 TILLADDEAILLLDFES 23 (132)
T ss_dssp EEEEECSSHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHH
Confidence 46777777766555543
No 37
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=28.21 E-value=1.7e+02 Score=23.00 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHhhc-cCCcEEEEecCCc
Q 040782 291 QPDVATRLFLRKMKME-LKLPVLALVDSDP 319 (435)
Q Consensus 291 yPD~aTR~fL~~L~~~-~~lPv~~LvD~DP 319 (435)
.|+...-.+++.|... .++|++.+++.+.
T Consensus 57 ~~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 57 FEGEESLNLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp TTTHHHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred CCCCcHHHHHHHHHHHCCCCCEEEEECCCC
Confidence 6766666677776654 3577777766544
No 38
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.89 E-value=2.2e+02 Score=21.92 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=10.4
Q ss_pred EEEEEechhHHHHHHH
Q 040782 259 FILLVEKDAAYIRLAE 274 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~ 274 (435)
.||+||-+..+...+.
T Consensus 4 ~ILivdd~~~~~~~l~ 19 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVS 19 (122)
T ss_dssp EEEEECSCHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHH
Confidence 4777777776655554
No 39
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=26.64 E-value=1.5e+02 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=9.9
Q ss_pred EEEEEechhHHHHHHH
Q 040782 259 FILLVEKDAAYIRLAE 274 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~ 274 (435)
.||+||.+..+...+.
T Consensus 4 ~ilivdd~~~~~~~l~ 19 (127)
T 2jba_A 4 RILVVEDEAPIREMVC 19 (127)
T ss_dssp EEEEECSCHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHH
Confidence 4677777766655443
No 40
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=26.63 E-value=2.1e+02 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=20.9
Q ss_pred cCChHHHHHHHHHhhcc-CCcEEEEecCCchhhHHHHHHhcC
Q 040782 291 QPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCG 331 (435)
Q Consensus 291 yPD~aTR~fL~~L~~~~-~lPv~~LvD~DP~Gi~I~~tYk~G 331 (435)
.|+...-.+++.|.... ++||+.+++.+... .+...++.|
T Consensus 68 ~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~-~~~~~~~~g 108 (137)
T 2pln_A 68 VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSE-EEVHAFEQG 108 (137)
T ss_dssp ECSTTHHHHHHHHHHHSTTSEEEEEESSCCHH-HHHHHHHTT
T ss_pred EcCccHHHHHHHHHhcCCCccEEEEeCCCCHH-HHHHHHHcC
Confidence 45555556666665544 56666666554322 233344443
No 41
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.34 E-value=1.2e+02 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=15.4
Q ss_pred cEEEEEechhHHHHHHHcccc
Q 040782 258 MFILLVEKDAAYIRLAEDRFY 278 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~ 278 (435)
..|||||.+..+...+..-+.
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~ 35 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLS 35 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHT
T ss_pred ceEEEECCCHHHHHHHHHHhc
Confidence 468999999888777765443
No 42
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.19 E-value=1.8e+02 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=10.4
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 8 ~iLivdd~~~~~~~l~~ 24 (149)
T 1k66_A 8 PLLVVEDSDEDFSTFQR 24 (149)
T ss_dssp CEEEECCCHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHH
Confidence 46777777666555443
No 43
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.96 E-value=1.4e+02 Score=23.45 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=35.4
Q ss_pred cEEEEEechhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCC---chhhHHHHHHhc
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSD---PYGLKILSVYGC 330 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~D---P~Gi~I~~tYk~ 330 (435)
..||+||.+..+...+..-+... .+-+.+.. .....+..+... -|=++++|.+ ..|+.++...+.
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~-g~~v~~~~-----~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDA-GFHIISAD-----SGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCEEEEES-----SHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHC-CeEEEEeC-----CHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45899999988776665433221 12122211 123444555432 2566777754 357777777764
No 44
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=25.57 E-value=1.3e+02 Score=23.29 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=12.4
Q ss_pred EEEEEechhHHHHHHHccc
Q 040782 259 FILLVEKDAAYIRLAEDRF 277 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~~~ 277 (435)
.||+||.+..+...+..-+
T Consensus 3 ~ilivdd~~~~~~~l~~~L 21 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLL 21 (134)
T ss_dssp EEEEECCCHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHH
Confidence 3677887777766665433
No 45
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=25.24 E-value=1.4e+02 Score=26.81 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=52.0
Q ss_pred cEEEEEechhHHHHHHHcccc--------------------CCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecC
Q 040782 258 MFILLVEKDAAYIRLAEDRFY--------------------NRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDS 317 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~--------------------~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~ 317 (435)
..|||||-+..+...+..-+. ...+-++|.--..|+..--.+++.|...+++||+.++..
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECC
Confidence 468888888877655532111 112447777788899999999999988778999999887
Q ss_pred CchhhHHHHHHhcCCc
Q 040782 318 DPYGLKILSVYGCGSK 333 (435)
Q Consensus 318 DP~Gi~I~~tYk~GS~ 333 (435)
+... .+...++.|..
T Consensus 118 ~~~~-~~~~a~~~Ga~ 132 (249)
T 3q9s_A 118 DTVE-EKVRLLGLGAD 132 (249)
T ss_dssp CSHH-HHHHHHHHTCS
T ss_pred CCHH-HHHHHHHCCCc
Confidence 6544 35556666643
No 46
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=25.09 E-value=1.7e+02 Score=22.26 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=10.1
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 5 ~ilivdd~~~~~~~l~~ 21 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKS 21 (123)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 46777777665554443
No 47
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=24.92 E-value=1.5e+02 Score=23.13 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=13.7
Q ss_pred cEEEEEechhHHHHHHHcc
Q 040782 258 MFILLVEKDAAYIRLAEDR 276 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~ 276 (435)
..||+||.+..+...+..-
T Consensus 8 ~~ilivdd~~~~~~~l~~~ 26 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILY 26 (136)
T ss_dssp CEEEEECSCHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHH
Confidence 4688888888877666543
No 48
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=24.68 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=32.4
Q ss_pred ccccchhhhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCC
Q 040782 69 LSDLSLSATCREVTDLSLSAVQSTIETLILQIARSILAGNG 109 (435)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ev~~rIe~~~~~i~~~i~~g~~ 109 (435)
++--+|-..+.+-..++..++..-++.++..+.++|.+|+.
T Consensus 4 mtk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g~~ 44 (93)
T 3rhi_A 4 MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEK 44 (93)
T ss_dssp ---CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 44445655666667889999999999999999999999976
No 49
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=24.41 E-value=2.1e+02 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=13.7
Q ss_pred CccEEEEEechhHHHHHHH
Q 040782 256 DAMFILLVEKDAAYIRLAE 274 (435)
Q Consensus 256 ~a~~VLvVEKeAvF~rL~~ 274 (435)
....|||||.+..+...+.
T Consensus 19 ~~~~ilivdd~~~~~~~l~ 37 (146)
T 4dad_A 19 GMINILVASEDASRLAHLA 37 (146)
T ss_dssp GGCEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHH
Confidence 3457899999888766554
No 50
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.18 E-value=2.7e+02 Score=22.13 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=17.4
Q ss_pred EEEecCCcCChHHHHHHHHHhhc-cCCcEEEEecCC
Q 040782 284 IIVTAKGQPDVATRLFLRKMKME-LKLPVLALVDSD 318 (435)
Q Consensus 284 ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~LvD~D 318 (435)
++|..-..|+...-.+++.|... ..+|++.+++.+
T Consensus 54 lii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 54 IVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp EEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 44444444554455555555543 345555555543
No 51
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.03 E-value=1.3e+02 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=11.0
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.|||||.+..+...+..
T Consensus 9 ~iLivdd~~~~~~~l~~ 25 (154)
T 2rjn_A 9 TVMLVDDEQPILNSLKR 25 (154)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHH
Confidence 47777777766555543
No 52
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.35 E-value=2.1e+02 Score=22.95 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=22.0
Q ss_pred eEEEecCCcCChHHHHHHHHHhhc-cCCcEEEEecCCc
Q 040782 283 CIIVTAKGQPDVATRLFLRKMKME-LKLPVLALVDSDP 319 (435)
Q Consensus 283 ~ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~LvD~DP 319 (435)
-++|..-..|+...-.+++.|... .++||+.+++.+.
T Consensus 49 dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 49 GIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 355555556666666666666553 4577777766543
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=22.87 E-value=2.2e+02 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=12.3
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
..|||||.+..+...+..
T Consensus 4 ~~ilivdd~~~~~~~l~~ 21 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQY 21 (136)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHH
Confidence 357888888777665544
No 54
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=22.60 E-value=2.7e+02 Score=21.51 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=11.2
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 5 ~ilivdd~~~~~~~l~~ 21 (140)
T 2qr3_A 5 TIIIVDDNKGVLTAVQL 21 (140)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 47777777766665554
No 55
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.30 E-value=55 Score=27.42 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred EEEEE--echhHHHHHHHccccCCCCeEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCCchhhH
Q 040782 259 FILLV--EKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLK 323 (435)
Q Consensus 259 ~VLvV--EKeAvF~rL~~~~~~~~~~~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~DP~Gi~ 323 (435)
.++|+ ..+-+|...++ ....+|||+|+.-.|+-....... +.++||+ .++.|-+-..
T Consensus 54 ~l~I~~G~r~~~~l~a~~---~~~~~~iIlt~g~~~~~~i~~~A~----~~~ipvl-~t~~~T~~~~ 112 (139)
T 2ioj_A 54 AALVTGGDRSDLLLTALE---MPNVRCLILTGNLEPVQLVLTKAE----ERGVPVI-LTGHDTLTAV 112 (139)
T ss_dssp EEEEEETTCHHHHHHHTT---CTTEEEEEEETTCCCCHHHHHHHH----HHTCCEE-ECSSCHHHHH
T ss_pred EEEEEcCCHHHHHHHHHh---CCCCcEEEEcCCCCCCHHHHHHHH----HCCCeEE-EECCCHHHHH
Confidence 34444 44455554433 123689999999999888774444 5689987 4788877653
No 56
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=21.89 E-value=2.6e+02 Score=21.72 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEecCCcCChHHHHHHHHHhhc-cCCcEEEEecCCc
Q 040782 284 IIVTAKGQPDVATRLFLRKMKME-LKLPVLALVDSDP 319 (435)
Q Consensus 284 ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~LvD~DP 319 (435)
++|..-..|+..--.+++.|.+. .++|++.++..+.
T Consensus 52 lvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 52 VVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKR 88 (133)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred EEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 55555555655555666666543 3566666655443
No 57
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=21.76 E-value=2.7e+02 Score=21.40 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=10.8
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||-+..+...++.
T Consensus 7 ~iLivdd~~~~~~~l~~ 23 (129)
T 3h1g_A 7 KLLVVDDSSTMRRIIKN 23 (129)
T ss_dssp CEEEECSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHH
Confidence 36777777766655543
No 58
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.62 E-value=2.8e+02 Score=21.74 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=10.9
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.|||||.+..+...+..
T Consensus 6 ~iLivdd~~~~~~~l~~ 22 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLEL 22 (136)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHH
Confidence 57777777766555543
No 59
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=21.45 E-value=1.4e+02 Score=23.10 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHHccccCCCC-eEEEecCCcCChHHHHHHHHHhhccCCcEEEEecCCch
Q 040782 270 IRLAEDRFYNRFP-CIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 320 (435)
Q Consensus 270 ~rL~~~~~~~~~~-~ILITgKGyPD~aTR~fL~~L~~~~~lPv~~LvD~DP~ 320 (435)
.+++++......+ ..+|+|||-. ..-+..-..|.+.+ -|..|.++.|.
T Consensus 22 ~~fl~~a~~~g~~~v~IIHGkG~G-vLr~~V~~~L~~~~--~V~~f~~a~~~ 70 (83)
T 2zqe_A 22 DQALEEARALGLSTLRLLHGKGTG-ALRQAIREALRRDK--RVESFADAPPG 70 (83)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTS-HHHHHHHHHHHHCT--TEEEEEECCTT
T ss_pred HHHHHHHHHCCCCEEEEEECCCch-HHHHHHHHHHhcCC--ceeEEEEcCcc
Confidence 3444443333344 4679999974 44444444455532 36677777663
No 60
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.28 E-value=2.8e+02 Score=21.15 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=9.7
Q ss_pred EEEEEechhHHHHHHH
Q 040782 259 FILLVEKDAAYIRLAE 274 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~ 274 (435)
.||+||.+..+...+.
T Consensus 5 ~ilivdd~~~~~~~l~ 20 (126)
T 1dbw_A 5 TVHIVDDEEPVRKSLA 20 (126)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHH
Confidence 4677777766655443
No 61
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=20.78 E-value=3.2e+02 Score=21.68 Aligned_cols=17 Identities=47% Similarity=0.602 Sum_probs=10.0
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...++.
T Consensus 10 ~ILivdd~~~~~~~l~~ 26 (149)
T 1i3c_A 10 VILLVEDSKADSRLVQE 26 (149)
T ss_dssp EEEEECCCHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHH
Confidence 46667766666555443
No 62
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.67 E-value=3.3e+02 Score=21.88 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=13.4
Q ss_pred cEEEEEechhHHHHHHHc
Q 040782 258 MFILLVEKDAAYIRLAED 275 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~ 275 (435)
-.|||||.+..+...+..
T Consensus 37 ~~Ilivdd~~~~~~~l~~ 54 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQ 54 (157)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHH
Confidence 368999998887766654
No 63
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=20.67 E-value=2.6e+02 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=11.3
Q ss_pred EEEEEechhHHHHHHHc
Q 040782 259 FILLVEKDAAYIRLAED 275 (435)
Q Consensus 259 ~VLvVEKeAvF~rL~~~ 275 (435)
.||+||.+..+...+..
T Consensus 5 ~ilivdd~~~~~~~l~~ 21 (124)
T 1srr_A 5 KILIVDDQSGIRILLNE 21 (124)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 47777777776665544
No 64
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=20.64 E-value=1.5e+02 Score=27.46 Aligned_cols=69 Identities=16% Similarity=0.305 Sum_probs=41.0
Q ss_pred CCCeEEEecCCcCChHH----------------HHHHHHHhhccCCcEEEEecCCchhh--H--HHHHHhcCCccccccc
Q 040782 280 RFPCIIVTAKGQPDVAT----------------RLFLRKMKMELKLPVLALVDSDPYGL--K--ILSVYGCGSKNMSYDS 339 (435)
Q Consensus 280 ~~~~ILITgKGyPD~aT----------------R~fL~~L~~~~~lPv~~LvD~DP~Gi--~--I~~tYk~GS~~~a~~s 339 (435)
...+|++||.| +..+. ..++..|. .++.|+++.+++...|- . ..|-|+..+. +
T Consensus 50 ~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-----~ 122 (255)
T 3p5m_A 50 SVRAVLLTGAG-RAFCSGGDLTGGDTAGAADAANRVVRAIT-SLPKPVIAGVHGAAVGFGCSLALACDLVVAAP-----A 122 (255)
T ss_dssp TCCEEEEEESS-SCSBCEECC---CHHHHHHHHHHHHHHHH-HCSSCEEEEECSEEETHHHHHHHHSSEEEECT-----T
T ss_pred CeEEEEEECCC-CCccCCCChhhhcchHHHHHHHHHHHHHH-hCCCCEEEEeCCeehhhHHHHHHHCCEEEEcC-----C
Confidence 35789999987 42211 23444443 36789999999998763 3 3344454332 2
Q ss_pred CCCCCCCceecccCccc
Q 040782 340 ANLTTPDIKWLGIRPSD 356 (435)
Q Consensus 340 ~~l~~P~l~wLGv~~sD 356 (435)
..+..|.++ +|+.|..
T Consensus 123 a~f~~pe~~-~Gl~p~~ 138 (255)
T 3p5m_A 123 SYFQLAFTR-VGLMPDG 138 (255)
T ss_dssp CEEECGGGG-GTCCCCT
T ss_pred cEEeCcccc-cCcCCCc
Confidence 334566555 6776643
No 65
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.59 E-value=82 Score=24.83 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=33.4
Q ss_pred cEEEEEechhHHHHHHHccccCC---------------------CCeEEEecCCcCChHHHHHHHHHhhc-cCCcEEEEe
Q 040782 258 MFILLVEKDAAYIRLAEDRFYNR---------------------FPCIIVTAKGQPDVATRLFLRKMKME-LKLPVLALV 315 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~~~~~~---------------------~~~ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~Lv 315 (435)
..||+||.+..+...+..-+... .+-++|.--..|+...-.+++.|... .++|++.++
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 94 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVS 94 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEe
Confidence 46899999888766654322111 12244444445555555555555543 256666665
Q ss_pred cCC
Q 040782 316 DSD 318 (435)
Q Consensus 316 D~D 318 (435)
..+
T Consensus 95 ~~~ 97 (135)
T 3snk_A 95 DEL 97 (135)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 66
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=20.54 E-value=54 Score=28.78 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.2
Q ss_pred EEEecCCcCChHHHHHHHHHhhccCCcE
Q 040782 284 IIVTAKGQPDVATRLFLRKMKMELKLPV 311 (435)
Q Consensus 284 ILITgKGyPD~aTR~fL~~L~~~~~lPv 311 (435)
++||+..-|+..++.|.+.|...++.|.
T Consensus 2 ilITTSr~Ps~~l~~fakeLa~~ln~~~ 29 (156)
T 1w94_A 2 MLLTTSRKPSQRTRSFSQRLSRIMGWRY 29 (156)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCEE
Confidence 6899999999999999999987766543
No 67
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=20.47 E-value=1.4e+02 Score=23.58 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=31.4
Q ss_pred cchhhhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCC
Q 040782 72 LSLSATCREVTDLSLSAVQSTIETLILQIARSILAGNG 109 (435)
Q Consensus 72 ~~~~~~~~~~~~~~~~ev~~rIe~~~~~i~~~i~~g~~ 109 (435)
.+|-+.+.+-..++..++..-|+.++..+.++|.+|+.
T Consensus 6 ~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L~~G~~ 43 (99)
T 1owf_A 6 AEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQ 43 (99)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 34545566666789999999999999999999999975
No 68
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=20.26 E-value=3.8e+02 Score=22.40 Aligned_cols=73 Identities=8% Similarity=-0.000 Sum_probs=46.2
Q ss_pred cEEEEEechhHHHHHHHc-----ccc-----------CCCCeEEEecCCcCChHHHHHHHHHhhc-cCCcEEEEecCCch
Q 040782 258 MFILLVEKDAAYIRLAED-----RFY-----------NRFPCIIVTAKGQPDVATRLFLRKMKME-LKLPVLALVDSDPY 320 (435)
Q Consensus 258 ~~VLvVEKeAvF~rL~~~-----~~~-----------~~~~~ILITgKGyPD~aTR~fL~~L~~~-~~lPv~~LvD~DP~ 320 (435)
-.|||||.+..+...+.. ++. ...+-++|+--..|+..-- +++.+... .++||+.++..+-.
T Consensus 13 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~ 91 (196)
T 1qo0_D 13 LQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESP 91 (196)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSH
T ss_pred CeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhCCCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCCh
Confidence 358999988876554432 221 1123467777777887654 77777665 67899888876554
Q ss_pred hhHHHHHHhcCC
Q 040782 321 GLKILSVYGCGS 332 (435)
Q Consensus 321 Gi~I~~tYk~GS 332 (435)
. .+...++.|.
T Consensus 92 ~-~~~~a~~~ga 102 (196)
T 1qo0_D 92 A-VLSQIIELEC 102 (196)
T ss_dssp H-HHHHHHHHTC
T ss_pred H-HHHHHHHcCC
Confidence 4 4555666663
Done!