BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040787
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 182/321 (56%), Gaps = 12/321 (3%)
Query: 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIP 64
IG+ YG + +NLPS +D +KL + +I+K+R+Y P + AL S I+I++ N ++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 65 ALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDEN---FRKQLLPAMQNMQNALD 121
ALA +P+ A W+ N+ +P I VGNE+ + + + PAM+N+ NAL
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 122 AGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYY 181
+ L +IKVST +L+++ PP F+ + +GF P N YPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 182 AYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTE 241
+ + L+Y LF N R N+ Y N+FDA VD+ A LG N+EI+V+E
Sbjct: 182 GHIDNTNAVPLSYALF--NQQR---RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSE 236
Query: 242 TGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGP 301
+GWPS+G P AT+ A+ YY+ LI H++ AGTP PGKT +TYLFA++DEN K+G
Sbjct: 237 SGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 302 ISERSFGLFKPDRTANFDVGL 322
SE+ FGLF PD+ + +
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 181/321 (56%), Gaps = 12/321 (3%)
Query: 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIP 64
IG+ YG + +NLPS +D +KL + +I+K+R+Y P + AL S I+I++ N ++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 65 ALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDEN---FRKQLLPAMQNMQNALD 121
ALA +P+ A W+ N+ +P I VGNE+ + + + PAM+N+ NAL
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 122 AGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYY 181
+ L +IKVST +L+++ PP F+ + +GF P N YPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 182 AYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTE 241
+ + L+Y LF N R N+ Y N+FDA VD+ A LG N+EI+V+
Sbjct: 182 GHIDNTNAVPLSYALF--NQQR---RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSA 236
Query: 242 TGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGP 301
+GWPS+G P AT+ A+ YY+ LI H++ AGTP PGKT +TYLFA++DEN K+G
Sbjct: 237 SGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 302 ISERSFGLFKPDRTANFDVGL 322
SE+ FGLF PD+ + +
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNF 314
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 187/318 (58%), Gaps = 6/318 (1%)
Query: 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIP 64
IG+ YG LG+NLP P + V L +S +I ++RLY P+ ++AL NS I +++ S++
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 65 ALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGS 124
+LAS+P+AA WI NV+ ++P+ + I VGNE+ + + +LPAM+N+ NAL +
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 125 LGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYN 184
L +IKVST VL S PPS+G F + + + F + G+P +N YPY++Y
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 185 SDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGW 244
+P L Y LF +G V + Y N+FDA VDA +AL +G NV +VV+E+GW
Sbjct: 181 GNPGQISLPYALFTA-SGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGW 239
Query: 245 PSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGPISE 304
PS G E A+ A+ Y LI H+ GTP PGK + Y+F +++EN K G I E
Sbjct: 240 PSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGI-E 294
Query: 305 RSFGLFKPDRTANFDVGL 322
++FGLF P++ + +
Sbjct: 295 QNFGLFYPNKQPVYQISF 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 184/317 (58%), Gaps = 14/317 (4%)
Query: 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIP 64
IG+ YG +G+NLPS D V+L +S I +R+Y D + AL NSGI +++ N ++
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 65 ALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGS 124
+A+ + A +W+ NV P+YPA NI I GNE+ + +LPAM+N+ NA + +
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGAT--QSILPAMRNL-NAALSAA 117
Query: 125 LGGKIKVSTVHSMSVLSHSDPPSSGEFQ-TWLVDVMKGFLGFNNATGSPFAINPYPYYAY 183
G IKVST +++S PPS+G F+ ++ DV + +TG+P N YPY+AY
Sbjct: 118 GLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDVARLLA----STGAPLLANVYPYFAY 173
Query: 184 NSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETG 243
+P L Y FQ D NN + Y ++FDA VDA +AL G V++VV+E+G
Sbjct: 174 RDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESG 233
Query: 244 WPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGPIS 303
WPS G A+ A+ Y GLI H+ GTP + +TY+FA+++EN K G +
Sbjct: 234 WPSAGGFA---ASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTGDAT 287
Query: 304 ERSFGLFKPDRTANFDV 320
ERSFGLF PD++ +++
Sbjct: 288 ERSFGLFNPDKSPAYNI 304
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 188/320 (58%), Gaps = 12/320 (3%)
Query: 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIP 64
+G+ YG G+NLP + + L + ++I ++R+Y P+ +++AL S I++++G NS++
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 65 ALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDEN----FRKQLLPAMQNMQNAL 120
+L ++P+ AK+W+ NV F+ + I VGNEIS + +LPAM+N+ +A+
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 121 DAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPY 180
+ L +IKVST ++++ +S PPS+G F+ + + + F ++ SP N YPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 181 YAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVT 240
+ Y +PR L Y LF + V + Y N+FDA +DA SAL ++E+VV+
Sbjct: 181 FTYAGNPRDISLPYALF-TSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVS 239
Query: 241 ETGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQG 300
E+GWPS G AT D + Y S LI H+ K GTP P + +TYLFA++DEN KQ
Sbjct: 240 ESGWPSAGAFA---ATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENKKQ- 293
Query: 301 PISERSFGLFKPDRTANFDV 320
P E+ FGLF P++ +++
Sbjct: 294 PEVEKHFGLFFPNKWQKYNL 313
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 12/309 (3%)
Query: 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIP 64
IG+ YG +NLP+ V + +S I+ +RLY+P+ ++A+ +GI++VVG N +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 65 ALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGS 124
LA+ P AA +W+ +N+ YP + + VGNE++ + L+PAM+N+ AL A
Sbjct: 61 NLAASPAAAASWVKSNIQA-YPKVSFRYVCVGNEVAGGAT--RNLVPAMKNVHGALVAAG 117
Query: 125 LGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYN 184
L G IKV+T S ++L PPS+G F M + F T +P N YPY A+
Sbjct: 118 L-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWA 176
Query: 185 SDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGW 244
+P + Y LF +G V + Y N+FD VDA +A+ G ++V++VV+E+GW
Sbjct: 177 YNPSAMDMGYALFNA-SGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGW 235
Query: 245 PSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGPISE 304
PS G AT A+ Y LI H+ GTP PG +TY+FA+++EN K + E
Sbjct: 236 PSGGGTA---ATPANARFYNQHLINHVGR--GTPRHPG-AIETYIFAMFNENQKDSGV-E 288
Query: 305 RSFGLFKPD 313
+++GLF P+
Sbjct: 289 QNWGLFYPN 297
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 71/86 (82%)
Query: 338 WCVPKEGVTNKQLQANIDYACGRGIDCSPIAPGGACFEPDTLASHAAYAMNLHHQTNGRN 397
WCVPK GV++ QL NI+YAC +GIDC PI PGGACFEP+T+ +HAAY MNL++Q GRN
Sbjct: 13 WCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRN 72
Query: 398 AWDCDFSKTATLSSKDPSYKGCIYPS 423
+W+CDFS+TATL++ +PSY C +PS
Sbjct: 73 SWNCDFSQTATLTNTNPSYGACNFPS 98
>pdb|2YGT|A Chain A, Clostridium Perfringens Delta-Toxin
Length = 298
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 323 LKNNKENPGAPNKAMWCVPKEGVTNKQLQANIDYACGRGIDCSPIAPGGACFEPDTLASH 382
LKNN + K + VPK ++ K++ I Y+ G GID S A A + S+
Sbjct: 97 LKNNSLDSSV--KIVDSVPKNTISTKEVNNTISYSIGGGIDTSNKASLNANYAVSKSISY 154
Query: 383 AA--YAMNLHHQTNGRNAWDCDFSKT 406
Y + TN +W+ +F++T
Sbjct: 155 VQPDYNTIQTNDTNSIASWNTEFAET 180
>pdb|3U1L|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
pdb|3U1M|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
Length = 240
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 138 SVLSHSDPPSSG-EFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCL 196
S L S P +G F W +GF G N SPFA+ P + G L +CL
Sbjct: 16 SELPSSIPAQTGLTFNIWYNKWSQGFAG-NTRFVSPFALQPQLHSGKTRGDNDGQLFFCL 74
Query: 197 FQVNAGRVDPNNNIKYMNMFDAQVDAARSALNS 229
F G +Y++ + D + AL +
Sbjct: 75 F-FAKGMCCLGPKCEYLHHIPDEEDIGKLALRT 106
>pdb|3TP2|A Chain A, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
pdb|3TP2|B Chain B, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
Length = 229
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 138 SVLSHSDPPSSG-EFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCL 196
S L S P +G F W +GF G N SPFA+ P + G L +CL
Sbjct: 18 SELPSSIPAQTGLTFNIWYNKWSQGFAG-NTRFVSPFALQPQLHSGKTRGDNDGQLFFCL 76
Query: 197 F 197
F
Sbjct: 77 F 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,243,926
Number of Sequences: 62578
Number of extensions: 624823
Number of successful extensions: 1107
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 18
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)