Query 040787
Match_columns 436
No_of_seqs 255 out of 1633
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 7E-86 1.5E-90 657.6 21.7 308 5-322 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 4.2E-43 9E-48 332.7 21.9 250 3-314 44-305 (305)
3 smart00768 X8 Possibly involve 100.0 1.5E-29 3.3E-34 206.4 8.5 85 337-421 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 6E-22 1.3E-26 158.9 5.7 68 337-408 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.8 1.2E-20 2.7E-25 185.6 15.1 234 5-315 30-294 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.1 3.7E-09 7.9E-14 106.8 18.0 248 19-320 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.8 2.8E-07 6E-12 90.2 16.7 255 18-321 64-389 (403)
8 PRK10150 beta-D-glucuronidase; 98.4 4.7E-05 1E-09 83.4 24.1 240 22-320 318-585 (604)
9 PF00150 Cellulase: Cellulase 98.3 4.4E-05 9.4E-10 74.2 17.8 195 18-249 22-251 (281)
10 smart00633 Glyco_10 Glycosyl h 97.5 0.013 2.7E-07 57.3 19.1 76 227-320 175-251 (254)
11 PF11790 Glyco_hydro_cc: Glyco 97.3 0.011 2.5E-07 57.2 16.8 210 29-316 18-232 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 97.1 0.029 6.2E-07 55.9 17.2 95 5-99 18-132 (298)
13 TIGR03356 BGL beta-galactosida 96.8 0.25 5.3E-06 52.2 21.3 80 19-100 56-163 (427)
14 PF00232 Glyco_hydro_1: Glycos 96.2 0.035 7.6E-07 58.9 11.3 116 19-138 60-224 (455)
15 PLN02814 beta-glucosidase 95.4 1.5 3.3E-05 47.2 19.6 80 19-100 79-187 (504)
16 PLN02998 beta-glucosidase 95.2 2.7 5.9E-05 45.3 20.6 47 19-65 84-149 (497)
17 PRK10340 ebgA cryptic beta-D-g 95.2 0.67 1.5E-05 54.2 17.0 97 5-101 337-452 (1021)
18 PLN02849 beta-glucosidase 95.0 2.6 5.7E-05 45.4 19.9 47 19-65 81-146 (503)
19 PRK09852 cryptic 6-phospho-bet 88.7 38 0.00082 36.4 23.2 47 19-65 73-139 (474)
20 PRK09593 arb 6-phospho-beta-gl 88.5 39 0.00084 36.3 24.3 47 19-65 75-141 (478)
21 PF02449 Glyco_hydro_42: Beta- 87.5 1.7 3.7E-05 44.7 7.4 83 19-101 12-140 (374)
22 cd02875 GH18_chitobiase Chitob 86.5 5.5 0.00012 41.0 10.4 132 30-182 55-191 (358)
23 PF03662 Glyco_hydro_79n: Glyc 85.6 3.5 7.7E-05 41.9 8.3 176 43-251 114-302 (319)
24 COG3934 Endo-beta-mannanase [C 81.4 4.7 0.0001 42.9 7.3 184 74-320 123-312 (587)
25 cd02874 GH18_CFLE_spore_hydrol 79.9 20 0.00044 35.8 11.2 84 40-125 47-138 (313)
26 PRK15014 6-phospho-beta-glucos 78.8 99 0.0022 33.2 23.5 46 19-64 71-136 (477)
27 PRK09525 lacZ beta-D-galactosi 76.9 21 0.00046 42.0 11.6 97 5-101 353-465 (1027)
28 PRK09589 celA 6-phospho-beta-g 71.5 1.5E+02 0.0033 31.8 24.2 47 19-65 69-135 (476)
29 PF00925 GTP_cyclohydro2: GTP 68.8 7.3 0.00016 35.8 4.4 38 22-59 131-168 (169)
30 smart00481 POLIIIAc DNA polyme 68.1 19 0.00042 27.2 6.0 45 16-60 14-63 (67)
31 PF13547 GTA_TIM: GTA TIM-barr 64.2 14 0.0003 36.9 5.5 78 88-179 18-108 (299)
32 TIGR00505 ribA GTP cyclohydrol 62.3 13 0.00028 34.8 4.8 33 23-55 131-163 (191)
33 PRK00393 ribA GTP cyclohydrola 62.0 13 0.00029 35.0 4.8 36 23-58 134-169 (197)
34 TIGR01579 MiaB-like-C MiaB-lik 61.8 1.7E+02 0.0036 30.6 13.5 140 16-185 166-332 (414)
35 COG4782 Uncharacterized protei 60.2 33 0.00071 35.6 7.5 60 212-274 125-187 (377)
36 PF14488 DUF4434: Domain of un 60.1 72 0.0016 29.2 9.2 99 21-123 24-151 (166)
37 cd02872 GH18_chitolectin_chito 60.0 47 0.001 33.8 8.9 118 45-182 62-192 (362)
38 cd00598 GH18_chitinase-like Th 59.0 43 0.00093 30.8 7.7 83 42-125 53-142 (210)
39 PRK13511 6-phospho-beta-galact 58.9 27 0.00058 37.4 7.0 47 19-65 56-121 (469)
40 smart00636 Glyco_18 Glycosyl h 52.9 1.5E+02 0.0032 29.7 11.0 124 44-182 57-188 (334)
41 PF01229 Glyco_hydro_39: Glyco 52.3 2.7E+02 0.0058 29.8 13.4 249 23-317 46-350 (486)
42 cd00641 GTP_cyclohydro2 GTP cy 52.2 24 0.00052 33.1 4.8 36 23-58 133-168 (193)
43 COG3534 AbfA Alpha-L-arabinofu 50.3 3.5E+02 0.0077 29.1 13.7 140 19-178 51-244 (501)
44 COG2730 BglC Endoglucanase [Ca 50.3 1E+02 0.0022 32.3 9.6 102 20-123 76-218 (407)
45 PRK14328 (dimethylallyl)adenos 49.7 2.3E+02 0.0051 29.8 12.3 75 90-183 257-339 (439)
46 PRK12485 bifunctional 3,4-dihy 48.9 21 0.00045 37.1 4.1 36 22-58 330-365 (369)
47 PRK09989 hypothetical protein; 47.2 1.9E+02 0.0042 27.7 10.5 120 4-125 3-138 (258)
48 PRK14019 bifunctional 3,4-dihy 45.9 26 0.00055 36.4 4.2 36 23-59 328-363 (367)
49 cd02876 GH18_SI-CLP Stabilin-1 45.6 1.6E+02 0.0035 29.4 9.9 125 41-182 54-191 (318)
50 PRK09318 bifunctional 3,4-dihy 44.5 33 0.00072 35.9 4.8 38 23-60 320-357 (387)
51 PRK14326 (dimethylallyl)adenos 44.5 2.1E+02 0.0045 30.9 11.1 71 91-180 268-346 (502)
52 PRK09314 bifunctional 3,4-dihy 44.4 31 0.00067 35.5 4.4 34 22-55 300-334 (339)
53 PRK08815 GTP cyclohydrolase; P 44.0 34 0.00074 35.6 4.7 37 23-59 305-341 (375)
54 COG1433 Uncharacterized conser 43.5 55 0.0012 28.6 5.3 39 21-59 56-94 (121)
55 cd02873 GH18_IDGF The IDGF's ( 43.3 1.8E+02 0.0038 30.6 10.1 21 105-125 167-187 (413)
56 PF02055 Glyco_hydro_30: O-Gly 43.2 4E+02 0.0086 28.9 12.9 89 49-137 166-283 (496)
57 PLN02831 Bifunctional GTP cycl 42.7 35 0.00076 36.4 4.7 37 23-59 373-409 (450)
58 PF14871 GHL6: Hypothetical gl 42.6 63 0.0014 28.4 5.6 44 18-61 1-67 (132)
59 TIGR03632 bact_S11 30S ribosom 42.4 55 0.0012 27.8 5.0 36 20-55 50-90 (108)
60 PRK09311 bifunctional 3,4-dihy 42.0 37 0.00081 35.7 4.7 38 22-59 338-375 (402)
61 PRK09319 bifunctional 3,4-dihy 41.7 38 0.00082 37.0 4.8 39 22-60 342-380 (555)
62 PF05990 DUF900: Alpha/beta hy 41.2 77 0.0017 30.5 6.5 43 228-273 43-88 (233)
63 PRK14334 (dimethylallyl)adenos 40.8 4.6E+02 0.01 27.6 14.5 74 90-182 247-328 (440)
64 cd04743 NPD_PKS 2-Nitropropane 40.2 2.8E+02 0.0061 28.3 10.5 79 3-99 56-134 (320)
65 PF13377 Peripla_BP_3: Peripla 38.5 1.6E+02 0.0034 25.3 7.6 108 23-152 1-120 (160)
66 cd06545 GH18_3CO4_chitinase Th 37.6 75 0.0016 30.7 5.9 81 42-125 50-133 (253)
67 COG3250 LacZ Beta-galactosidas 37.2 1.3E+02 0.0028 34.7 8.3 81 21-101 325-409 (808)
68 PRK09936 hypothetical protein; 36.7 4.6E+02 0.01 26.5 11.4 128 4-133 21-180 (296)
69 PRK07198 hypothetical protein; 35.5 36 0.00078 35.6 3.3 38 23-60 338-376 (418)
70 PRK14327 (dimethylallyl)adenos 35.2 6.2E+02 0.013 27.5 15.4 75 90-183 322-404 (509)
71 TIGR03628 arch_S11P archaeal r 34.8 83 0.0018 27.2 4.9 36 20-55 53-101 (114)
72 PRK14338 (dimethylallyl)adenos 33.6 4.9E+02 0.011 27.6 11.7 137 16-182 183-346 (459)
73 PF04909 Amidohydro_2: Amidohy 33.5 55 0.0012 30.9 4.2 91 109-245 83-175 (273)
74 TIGR01233 lacG 6-phospho-beta- 33.3 96 0.0021 33.2 6.3 47 19-65 55-120 (467)
75 PRK14336 (dimethylallyl)adenos 33.0 4.6E+02 0.0099 27.5 11.2 61 103-182 255-315 (418)
76 COG0807 RibA GTP cyclohydrolas 33.0 86 0.0019 29.7 5.1 40 23-62 133-172 (193)
77 PRK14330 (dimethylallyl)adenos 32.9 6E+02 0.013 26.7 14.2 75 90-183 250-332 (434)
78 PRK09997 hydroxypyruvate isome 32.8 4.5E+02 0.0097 25.1 11.3 119 5-125 4-138 (258)
79 PRK05723 flavodoxin; Provision 32.4 3.7E+02 0.0079 24.0 10.3 116 4-126 2-118 (151)
80 PF06180 CbiK: Cobalt chelatas 32.0 4.4E+02 0.0096 26.0 10.2 142 15-186 56-211 (262)
81 PF12876 Cellulase-like: Sugar 32.0 71 0.0015 25.7 4.0 46 87-134 8-63 (88)
82 PF00411 Ribosomal_S11: Riboso 31.9 76 0.0016 27.0 4.3 36 21-56 51-91 (110)
83 PF00704 Glyco_hydro_18: Glyco 30.7 1.4E+02 0.003 29.6 6.7 117 49-182 71-196 (343)
84 cd01543 PBP1_XylR Ligand-bindi 30.7 4.3E+02 0.0094 24.7 9.9 100 19-137 97-209 (265)
85 TIGR01125 MiaB-like tRNA modif 30.3 2.6E+02 0.0057 29.3 9.0 61 104-183 267-327 (430)
86 PRK09607 rps11p 30S ribosomal 30.2 1.1E+02 0.0023 27.3 5.0 36 20-55 60-108 (132)
87 CHL00041 rps11 ribosomal prote 29.6 1.3E+02 0.0029 25.8 5.5 35 21-55 64-103 (116)
88 PF00331 Glyco_hydro_10: Glyco 28.8 96 0.0021 31.3 5.2 219 42-319 63-312 (320)
89 PRK13347 coproporphyrinogen II 28.7 80 0.0017 33.5 4.7 21 106-126 262-282 (453)
90 PF02449 Glyco_hydro_42: Beta- 28.2 5.2E+02 0.011 26.4 10.6 55 106-180 208-262 (374)
91 PRK05309 30S ribosomal protein 28.2 1.3E+02 0.0028 26.5 5.2 35 21-55 68-107 (128)
92 cd06548 GH18_chitinase The GH1 28.1 6.2E+02 0.013 25.3 11.2 166 44-240 75-258 (322)
93 PTZ00333 triosephosphate isome 27.6 4.3E+02 0.0093 26.0 9.3 97 23-122 82-198 (255)
94 TIGR03234 OH-pyruv-isom hydrox 27.1 1.7E+02 0.0037 27.8 6.4 52 4-56 2-57 (254)
95 KOG0078 GTP-binding protein SE 27.0 1.4E+02 0.003 28.6 5.4 60 33-100 62-128 (207)
96 COG1058 CinA Predicted nucleot 26.0 1.8E+02 0.0039 28.7 6.3 59 89-174 3-65 (255)
97 PRK14337 (dimethylallyl)adenos 25.9 7.4E+02 0.016 26.2 11.4 137 16-182 176-340 (446)
98 PRK06552 keto-hydroxyglutarate 25.7 5.8E+02 0.013 24.2 10.5 86 18-121 118-210 (213)
99 PF00834 Ribul_P_3_epim: Ribul 25.5 5.7E+02 0.012 24.0 10.2 93 18-126 68-166 (201)
100 PRK14042 pyruvate carboxylase 25.3 5.3E+02 0.012 28.7 10.4 43 18-60 93-145 (596)
101 PF00977 His_biosynth: Histidi 25.3 2.1E+02 0.0045 27.4 6.6 71 17-103 29-109 (229)
102 COG2159 Predicted metal-depend 24.9 3.5E+02 0.0075 27.0 8.3 55 110-179 112-166 (293)
103 COG0621 MiaB 2-methylthioadeni 23.8 5.9E+02 0.013 27.2 10.0 130 5-183 196-337 (437)
104 PRK08091 ribulose-phosphate 3- 23.8 5.2E+02 0.011 25.0 8.9 95 18-126 79-179 (228)
105 PF02579 Nitro_FeMo-Co: Dinitr 23.8 2.5E+02 0.0054 22.1 5.9 39 19-57 42-80 (94)
106 PF01301 Glyco_hydro_35: Glyco 23.5 6.1E+02 0.013 25.6 9.8 109 21-133 28-180 (319)
107 PF02811 PHP: PHP domain; Int 23.5 1.9E+02 0.0042 25.2 5.7 45 16-60 15-64 (175)
108 PF11775 CobT_C: Cobalamin bio 23.3 57 0.0012 31.4 2.1 62 219-299 36-99 (219)
109 cd06418 GH25_BacA-like BacA is 23.3 6.5E+02 0.014 23.9 11.8 107 17-126 21-143 (212)
110 COG4213 XylF ABC-type xylose t 22.9 2.8E+02 0.0061 28.4 7.0 75 42-134 176-250 (341)
111 TIGR00510 lipA lipoate synthas 22.8 7.9E+02 0.017 24.7 10.6 136 18-184 92-248 (302)
112 PRK13586 1-(5-phosphoribosyl)- 22.8 5.7E+02 0.012 24.5 9.1 70 17-102 30-108 (232)
113 PF06117 DUF957: Enterobacteri 22.7 1.3E+02 0.0029 23.2 3.6 39 72-122 12-54 (65)
114 PRK13587 1-(5-phosphoribosyl)- 22.6 5.8E+02 0.013 24.5 9.1 69 17-101 31-110 (234)
115 TIGR02495 NrdG2 anaerobic ribo 22.3 5.8E+02 0.013 23.0 11.5 42 16-57 46-96 (191)
116 TIGR03822 AblA_like_2 lysine-2 22.2 4.8E+02 0.01 26.3 8.8 13 107-119 214-226 (321)
117 TIGR02026 BchE magnesium-proto 22.1 9.9E+02 0.021 25.6 12.9 92 17-118 222-334 (497)
118 cd00854 NagA N-acetylglucosami 22.0 1.2E+02 0.0026 31.1 4.5 44 16-60 145-194 (374)
119 PRK14331 (dimethylallyl)adenos 21.3 9.6E+02 0.021 25.1 14.0 188 16-242 174-388 (437)
120 cd04723 HisA_HisF Phosphoribos 21.0 6.1E+02 0.013 24.2 8.9 68 18-101 36-112 (233)
121 PLN03059 beta-galactosidase; P 21.0 4.9E+02 0.011 30.2 9.2 114 21-136 63-223 (840)
122 PRK14862 rimO ribosomal protei 20.7 8.6E+02 0.019 25.6 10.7 115 20-183 216-338 (440)
123 PF14606 Lipase_GDSL_3: GDSL-l 20.6 4.6E+02 0.0099 24.4 7.5 44 230-273 89-133 (178)
124 PTZ00090 40S ribosomal protein 20.3 2E+02 0.0043 27.8 5.1 37 22-58 172-212 (233)
125 PRK12359 flavodoxin FldB; Prov 20.2 6.8E+02 0.015 22.9 10.2 110 4-125 2-113 (172)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=7e-86 Score=657.62 Aligned_cols=308 Identities=51% Similarity=0.864 Sum_probs=253.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhcccc
Q 040787 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPF 84 (436)
Q Consensus 5 ~Gvnyg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~ 84 (436)
||||||+.|+|||+|.+|+++||+++|++||||++|+++|+|++++||+|++||+|++++.+++++..|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeeccccc-CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccc-hhhhHHHhhh
Q 040787 85 YPASNIFLIMVGNEISL-DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQ-TWLVDVMKGF 162 (436)
Q Consensus 85 ~~~~~I~~I~VGNEvl~-~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~-~~~~~~i~~~ 162 (436)
+|.++|++|+||||++. .... .|+|+|+++|++|++.||+++|||+|+++++++.++||||+|.|+ ++. .+|+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhhHH
Confidence 99999999999999998 3333 899999999999999999989999999999999999999999999 877 899999
Q ss_pred hhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEEEeee
Q 040787 163 LGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTET 242 (436)
Q Consensus 163 l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~VsEt 242 (436)
++||..+++|||+|+||||.+..+|.+++||||+|+++.++.|+ ++.|+||||+|+|++++||+|+|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998777755 7899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeecccccccCCccccceeeecCCCCeeeeecc
Q 040787 243 GWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGPISERSFGLFKPDRTANFDVGL 322 (436)
Q Consensus 243 GWPs~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~F~~FdE~~K~g~~~E~~wGlf~~d~~~ky~l~~ 322 (436)
||||+|+ .+|+++||+.|++++++++. .|||+||+..+++||||+|||+||+|+.+|||||||++||++||+++|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999 35899999999999999997 799999999999999999999999997899999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-43 Score=332.73 Aligned_cols=250 Identities=24% Similarity=0.352 Sum_probs=203.0
Q ss_pred CceeEEecCCCCC--CCCHHHHHHHHHhC-C-CCeEEecCCC----HHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHH
Q 040787 3 PFIGINYGNLGDN--LPSPEDTVKLLQST-S-IQKIRLYSPD----IPMIKALANSGIDIVVGTQNSEIPALASDPNAAK 74 (436)
Q Consensus 3 ~~~Gvnyg~~~~n--~ps~~~v~~~l~~~-~-~~~VRiY~~d----~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~ 74 (436)
++.+|+||++.++ +|+.+|+..+|..+ . ...||+|.+| .+|++|+...|++|+||||..+..+-+ .+
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~-----~~ 118 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA-----VE 118 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh-----HH
Confidence 3689999999876 79999997666542 2 3499999877 479999999999999999986543322 12
Q ss_pred HHHHhhccccCCCCcEEEEEeeccccc-CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccch
Q 040787 75 TWINTNVLPFYPASNIFLIMVGNEISL-DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQT 153 (436)
Q Consensus 75 ~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~ 153 (436)
.-+..++.++..++.|++|.||||+|+ ++.++.+|+.+|.+||.+|+++|++ .||+|++.|.++.+.
T Consensus 119 ~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n---------- 186 (305)
T COG5309 119 KTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN---------- 186 (305)
T ss_pred HHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC----------
Confidence 235567888888999999999999999 8999999999999999999999997 489999999988762
Q ss_pred hhhHHHhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCC
Q 040787 154 WLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYN 233 (436)
Q Consensus 154 ~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~ 233 (436)
+. |.++.||+|+|.||||+.+.-. +. .+ .+|-.|+.-+++++ | .
T Consensus 187 ---p~-------l~~~SDfia~N~~aYwd~~~~a-----------------~~----~~-~f~~~q~e~vqsa~---g-~ 230 (305)
T COG5309 187 ---PE-------LCQASDFIAANAHAYWDGQTVA-----------------NA----AG-TFLLEQLERVQSAC---G-T 230 (305)
T ss_pred ---hH-------Hhhhhhhhhcccchhccccchh-----------------hh----hh-HHHHHHHHHHHHhc---C-C
Confidence 22 4567899999999999974221 10 11 34556677776654 4 3
Q ss_pred CceEEEeeecCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeeccccccc-CC-ccccceeee
Q 040787 234 NVEIVVTETGWPSKGDDK-EPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQ-GP-ISERSFGLF 310 (436)
Q Consensus 234 ~~~i~VsEtGWPs~G~~~-~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~F~~FdE~~K~-g~-~~E~~wGlf 310 (436)
+++++|+||||||.|..+ ++.|+++||+.|++++++.+++ .++++|+||+|||+||. |. ++|+|||++
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~ 301 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWGVL 301 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhceeee
Confidence 499999999999999987 5789999999999999998875 35899999999999994 55 899999999
Q ss_pred cCCC
Q 040787 311 KPDR 314 (436)
Q Consensus 311 ~~d~ 314 (436)
..++
T Consensus 302 ~s~~ 305 (305)
T COG5309 302 SSDR 305 (305)
T ss_pred ccCC
Confidence 8764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=1.5e-29 Score=206.37 Aligned_cols=85 Identities=46% Similarity=0.990 Sum_probs=83.0
Q ss_pred eeeeecCCCChHHHHHHhhhhcCCCCCCCccCCCCcCCCCcchhhhHhHHHhHHHHhcCCCCCCCCCCCceEEEecCCCC
Q 040787 337 MWCVPKEGVTNKQLQANIDYACGRGIDCSPIAPGGACFEPDTLASHAAYAMNLHHQTNGRNAWDCDFSKTATLSSKDPSY 416 (436)
Q Consensus 337 ~wCv~~~~~~~~~l~~~l~~aC~~~~dC~~I~~~g~C~~p~t~~~~asya~N~Yyq~~~~~~~~C~F~G~a~~~~~dps~ 416 (436)
+|||+|+++++++||++|+|||+.++||++|++||.||.|+++++|||||||+|||++++..++|||+|+|+++++|||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 59999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCeec
Q 040787 417 KGCIY 421 (436)
Q Consensus 417 ~~C~~ 421 (436)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.85 E-value=6e-22 Score=158.86 Aligned_cols=68 Identities=51% Similarity=1.012 Sum_probs=58.2
Q ss_pred eeeeecCCCChHHHHHHhhhhcCCC-CCCCccCCCCc---------CCCCcchhhhHhHHHhHHHHhcCCCCCCCCCCCc
Q 040787 337 MWCVPKEGVTNKQLQANIDYACGRG-IDCSPIAPGGA---------CFEPDTLASHAAYAMNLHHQTNGRNAWDCDFSKT 406 (436)
Q Consensus 337 ~wCv~~~~~~~~~l~~~l~~aC~~~-~dC~~I~~~g~---------C~~p~t~~~~asya~N~Yyq~~~~~~~~C~F~G~ 406 (436)
+|||+++++++++|+++|||||+++ +||++|+++|. |+. ++|||||||+|||++++...+|||+|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~----~~~lSya~N~YY~~~~~~~~~C~F~G~ 76 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSP----RQHLSYAFNQYYQKQGRNSSACDFSGN 76 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-C----CHHHHHHHHHHHHHHTSSCCG-SS-ST
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCH----HHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 5999999999999999999999997 99999999998 883 999999999999999999999999999
Q ss_pred eE
Q 040787 407 AT 408 (436)
Q Consensus 407 a~ 408 (436)
||
T Consensus 77 at 78 (78)
T PF07983_consen 77 AT 78 (78)
T ss_dssp EE
T ss_pred CC
Confidence 96
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.85 E-value=1.2e-20 Score=185.56 Aligned_cols=234 Identities=21% Similarity=0.379 Sum_probs=129.5
Q ss_pred eeEEecCCCCC--------CCCHH---HHHHHHHhCCCCeEEecCCCH-----HHHHHHHhCCCeEEEeeCCCCchhccC
Q 040787 5 IGINYGNLGDN--------LPSPE---DTVKLLQSTSIQKIRLYSPDI-----PMIKALANSGIDIVVGTQNSEIPALAS 68 (436)
Q Consensus 5 ~Gvnyg~~~~n--------~ps~~---~v~~~l~~~~~~~VRiY~~d~-----~vl~A~~~~gi~V~lgv~n~~~~~~~~ 68 (436)
.||.|-+-++. |-.++ ..+.+||++|++.||+|..|| .+|++|++.||+|+++|..+.......
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRS 109 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TT
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCC
Confidence 69999887651 22333 245689999999999999885 699999999999999999875444444
Q ss_pred CHHHHHHHH-------HhhccccCCCCcEEEEEeeccccc---CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeecc
Q 040787 69 DPNAAKTWI-------NTNVLPFYPASNIFLIMVGNEISL---DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMS 138 (436)
Q Consensus 69 ~~~~a~~wv-------~~~v~~~~~~~~I~~I~VGNEvl~---~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~ 138 (436)
++. ..|- ..-|..+...+|+.++.+||||+. +...++.+.+++|++|+.+++.+++ +|||+++.+..
T Consensus 110 ~P~--~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD~ 186 (314)
T PF03198_consen 110 DPA--PSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAADD 186 (314)
T ss_dssp S--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE---
T ss_pred CCc--CCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccCC
Confidence 441 2352 222334444589999999999998 4467899999999999999999997 59999987642
Q ss_pred ccccCCcccccccchhhhHHHhhhhhhhhh-----cCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccc
Q 040787 139 VLSHSDPPSSGEFQTWLVDVMKGFLGFNNA-----TGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYM 213 (436)
Q Consensus 139 ~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~-----~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~ 213 (436)
. ....++.+||.+ ..|+|++|.|-|+.. . .|+. +| |.
T Consensus 187 ~-----------------~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~---S--------tf~~-SG---------y~ 228 (314)
T PF03198_consen 187 A-----------------EIRQDLANYLNCGDDDERIDFFGLNSYEWCGD---S--------TFET-SG---------YD 228 (314)
T ss_dssp T-----------------TTHHHHHHHTTBTT-----S-EEEEE----SS-------------HHH-HS---------HH
T ss_pred h-----------------hHHHHHHHHhcCCCcccccceeeeccceecCC---C--------cccc-cc---------HH
Confidence 1 223456778875 679999999986653 1 3432 22 32
Q ss_pred hHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeec
Q 040787 214 NMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALY 293 (436)
Q Consensus 214 n~~da~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~F~~F 293 (436)
. +...++ ++ .+||+++|.||.+... |.|.+ +..+.+..+|..+.|. .+||+|
T Consensus 229 ~--------l~~~f~--~y-~vPvffSEyGCn~~~p-----------R~f~e--v~aly~~~Mt~v~SGG----ivYEy~ 280 (314)
T PF03198_consen 229 R--------LTKEFS--NY-SVPVFFSEYGCNTVTP-----------RTFTE--VPALYSPEMTDVWSGG----IVYEYF 280 (314)
T ss_dssp H--------HHHHHT--T--SS-EEEEEE---SSSS--------------TH--HHHHTSHHHHTTEEEE----EES-SB
T ss_pred H--------HHHHhh--CC-CCCeEEcccCCCCCCC-----------ccchH--hHHhhCccchhheece----EEEEEe
Confidence 2 222333 33 5999999999987653 23333 3445554566666663 789999
Q ss_pred ccccccCCccccceeeecCCCC
Q 040787 294 DENLKQGPISERSFGLFKPDRT 315 (436)
Q Consensus 294 dE~~K~g~~~E~~wGlf~~d~~ 315 (436)
.| +++|||...++.
T Consensus 281 ~e--------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 281 QE--------ANNYGLVEISGD 294 (314)
T ss_dssp ----------SSS--SEEE-TT
T ss_pred cc--------CCceEEEEEcCC
Confidence 87 578999987654
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.11 E-value=3.7e-09 Score=106.81 Aligned_cols=248 Identities=17% Similarity=0.237 Sum_probs=121.5
Q ss_pred HHHHHHHHHhCCCCeEEe--cC-C------C-HH---HHHHHHhCCCeEEEeeCCCC---------ch-hccC-CHH---
Q 040787 19 PEDTVKLLQSTSIQKIRL--YS-P------D-IP---MIKALANSGIDIVVGTQNSE---------IP-ALAS-DPN--- 71 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi--Y~-~------d-~~---vl~A~~~~gi~V~lgv~n~~---------~~-~~~~-~~~--- 71 (436)
..+++++||..|++.||+ |. + | .. ..+.+++.||+|+|..--++ ++ +... +.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999985554 41 1 2 23 44555679999999987643 11 1111 111
Q ss_pred -HHHHHHHhhccccC-CCCcEEEEEeeccccc-------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeecccccc
Q 040787 72 -AAKTWINTNVLPFY-PASNIFLIMVGNEISL-------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSH 142 (436)
Q Consensus 72 -~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~-------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~ 142 (436)
+..++.++-+.... -+..+..|-||||+-. .......+...++.-.+++++..- ++||-.-.. ...
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~-- 180 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGG-- 180 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TT--
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCC--
Confidence 11222222111110 2467889999999865 123456667777777777776443 355543221 111
Q ss_pred CCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHH
Q 040787 143 SDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDA 222 (436)
Q Consensus 143 s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da 222 (436)
....|+-+.+.....-+ .-|.++++.||||... + +-+...++.
T Consensus 181 ----~~~~~~~~f~~l~~~g~-----d~DviGlSyYP~w~~~-------l---------------------~~l~~~l~~ 223 (332)
T PF07745_consen 181 ----DNDLYRWFFDNLKAAGV-----DFDVIGLSYYPFWHGT-------L---------------------EDLKNNLND 223 (332)
T ss_dssp ----SHHHHHHHHHHHHHTTG-----G-SEEEEEE-STTST--------H---------------------HHHHHHHHH
T ss_pred ----chHHHHHHHHHHHhcCC-----CcceEEEecCCCCcch-------H---------------------HHHHHHHHH
Confidence 11112100101111123 3499999999999851 0 123333443
Q ss_pred HHHHHHHcCCCCceEEEeeecCCCCCCC-----C---------CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEE
Q 040787 223 ARSALNSLGYNNVEIVVTETGWPSKGDD-----K---------EPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTY 288 (436)
Q Consensus 223 ~~~a~~k~g~~~~~i~VsEtGWPs~G~~-----~---------~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y 288 (436)
+. ++. +|+|+|.|||||..-.. + +-.+|++.|+.|+++|++.+.+..+ +..+-+|
T Consensus 224 l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gvf 292 (332)
T PF07745_consen 224 LA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGVF 292 (332)
T ss_dssp HH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEEE
T ss_pred HH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEEE
Confidence 33 333 48999999999997211 1 0126899999999999999876311 2235556
Q ss_pred EEeec-ccc-----cccCCccccceeeecCCCCeeeee
Q 040787 289 LFALY-DEN-----LKQGPISERSFGLFKPDRTANFDV 320 (436)
Q Consensus 289 ~F~~F-dE~-----~K~g~~~E~~wGlf~~d~~~ky~l 320 (436)
+-|-- -.. |..|...|.. +||+.+|++--.|
T Consensus 293 YWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 293 YWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred eeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 55522 111 1234344444 8999888865544
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.8e-07 Score=90.21 Aligned_cols=255 Identities=18% Similarity=0.258 Sum_probs=140.6
Q ss_pred CHHHHHHHHHhCCCCeEEe--c----CCC--------H------HHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHH
Q 040787 18 SPEDTVKLLQSTSIQKIRL--Y----SPD--------I------PMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWI 77 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRi--Y----~~d--------~------~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv 77 (436)
-.+++.+.||..|++.||+ | |.| . ++-+-+++.||||++..--++.=+-..-+..-.+|.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 3567789999999986554 4 333 1 344445678999999987654211111111123453
Q ss_pred Hh-------hccccC---------CCCcEEEEEeeccccc-----Ccc--cHHHHHHHHHHHHHHHHcCCCCCceEEEEe
Q 040787 78 NT-------NVLPFY---------PASNIFLIMVGNEISL-----DEN--FRKQLLPAMQNMQNALDAGSLGGKIKVSTV 134 (436)
Q Consensus 78 ~~-------~v~~~~---------~~~~I~~I~VGNEvl~-----~~~--~~~~l~~am~~v~~aL~~~gl~~~I~Vst~ 134 (436)
.- .|-.|- -...+..+-||||.-. .+. ....+...++.--++++... ..|||---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE
Confidence 22 222221 1356788999999964 111 23444444444445555433 35776543
Q ss_pred eeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccch
Q 040787 135 HSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMN 214 (436)
Q Consensus 135 ~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n 214 (436)
.+-. --.+.||-+.+.+-+.-++| |.|+.-.||||...-+
T Consensus 222 la~g-------~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~---------------------------- 261 (403)
T COG3867 222 LAEG-------ENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN---------------------------- 261 (403)
T ss_pred ecCC-------CCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------------
Confidence 3211 12245552222334444554 8899999999996211
Q ss_pred HHHHHHHHHHHHHHHcCCCCceEEEeeecC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHhhcC-C---
Q 040787 215 MFDAQVDAARSALNSLGYNNVEIVVTETGW--------------PSKGDDKEPWATIDKAKDYYSGLITHLRSKA-G--- 276 (436)
Q Consensus 215 ~~da~~da~~~a~~k~g~~~~~i~VsEtGW--------------Ps~G~~~~~~as~~na~~y~~~lv~~~~~~~-g--- 276 (436)
-|...++.+.. + .+|.|+|.||+. |+.+...+.-.+++-|++|.+++|+.+..-. +
T Consensus 262 nL~~nl~dia~---r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~Gl 335 (403)
T COG3867 262 NLTTNLNDIAS---R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGL 335 (403)
T ss_pred HHHhHHHHHHH---H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCce
Confidence 01111222221 1 358999999998 4433221223677899999999999886421 1
Q ss_pred ---------CCCCCCCcccE-EEEeecccccccCCccccceeeecCCCCeeeeec
Q 040787 277 ---------TPLMPGKTTDT-YLFALYDENLKQGPISERSFGLFKPDRTANFDVG 321 (436)
Q Consensus 277 ---------Tp~rpg~~~~~-y~F~~FdE~~K~g~~~E~~wGlf~~d~~~ky~l~ 321 (436)
-|.++|....+ |--++-+|+|+.|..+++ --||+.+|.|--.|.
T Consensus 336 GvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdN-qaLfdf~G~~LPSl~ 389 (403)
T COG3867 336 GVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDN-QALFDFNGHPLPSLN 389 (403)
T ss_pred EEEEecccceeccCCCccccchhhccCcccccCCCccch-hhhhhccCCcCcchh
Confidence 24434433332 333345677777744443 357888887766653
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.44 E-value=4.7e-05 Score=83.35 Aligned_cols=240 Identities=13% Similarity=0.107 Sum_probs=134.8
Q ss_pred HHHHHHhCCCCeEEec--CCCHHHHHHHHhCCCeEEEeeCCCC---------------chhcc------CCHHHHHHHHH
Q 040787 22 TVKLLQSTSIQKIRLY--SPDIPMIKALANSGIDIVVGTQNSE---------------IPALA------SDPNAAKTWIN 78 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY--~~d~~vl~A~~~~gi~V~lgv~n~~---------------~~~~~------~~~~~a~~wv~ 78 (436)
.+++||++|++.||+- -.++..+.++...||.|+.-++... ..... ...+...+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 3567899999999993 3357899999999999997664311 00110 01122233355
Q ss_pred hhccccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHH
Q 040787 79 TNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDV 158 (436)
Q Consensus 79 ~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~ 158 (436)
+.|..+....-|..-.+|||.-... ......++.+.+.+++..-+ =+|+.+..... . |..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~---~~~~~~~~~l~~~~k~~Dpt--R~vt~~~~~~~----~-~~~---------- 457 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE---QGAREYFAPLAELTRKLDPT--RPVTCVNVMFA----T-PDT---------- 457 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc---hhHHHHHHHHHHHHHhhCCC--CceEEEecccC----C-ccc----------
Confidence 5666655445688999999975311 12233445555555544433 35776642210 0 100
Q ss_pred HhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEE
Q 040787 159 MKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIV 238 (436)
Q Consensus 159 i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~ 238 (436)
+-+....|+++.|.|+=|-. +..+ .+ .....|+..++... ++ + ++|++
T Consensus 458 -----~~~~~~~Dv~~~N~Y~~wy~--~~~~----~~---------------~~~~~~~~~~~~~~---~~--~-~kP~~ 505 (604)
T PRK10150 458 -----DTVSDLVDVLCLNRYYGWYV--DSGD----LE---------------TAEKVLEKELLAWQ---EK--L-HKPII 505 (604)
T ss_pred -----ccccCcccEEEEcccceecC--CCCC----HH---------------HHHHHHHHHHHHHH---Hh--c-CCCEE
Confidence 01223468899999752221 1100 00 00122333332211 11 2 79999
Q ss_pred EeeecCCCCCCCC---CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeecccccccCC--ccccceeeecCC
Q 040787 239 VTETGWPSKGDDK---EPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGP--ISERSFGLFKPD 313 (436)
Q Consensus 239 VsEtGWPs~G~~~---~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~F~~FdE~~K~g~--~~E~~wGlf~~d 313 (436)
++|+|+.+.-+.. ...-+.+.|..|++...+.+.+ +|. -+-.|+..+||-....|. ....+.||++.|
T Consensus 506 isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~d 578 (604)
T PRK10150 506 ITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRD 578 (604)
T ss_pred EEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCC
Confidence 9999986632111 1124688888888877766653 232 244689999995544331 123578999999
Q ss_pred CCeeeee
Q 040787 314 RTANFDV 320 (436)
Q Consensus 314 ~~~ky~l 320 (436)
|+||-..
T Consensus 579 r~~k~~~ 585 (604)
T PRK10150 579 RQPKSAA 585 (604)
T ss_pred CCChHHH
Confidence 9998754
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.30 E-value=4.4e-05 Score=74.19 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=112.5
Q ss_pred CHHHHHHHHHhCCCCeEEecCC-------------CH-------HHHHHHHhCCCeEEEeeCCCC----chhccCCHHHH
Q 040787 18 SPEDTVKLLQSTSIQKIRLYSP-------------DI-------PMIKALANSGIDIVVGTQNSE----IPALASDPNAA 73 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRiY~~-------------d~-------~vl~A~~~~gi~V~lgv~n~~----~~~~~~~~~~a 73 (436)
..++.++.|++.|++.|||.=. +. .+|+++++.||+|+|.+.... ...........
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~ 101 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTA 101 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhh
Confidence 7788899999999999999711 11 578889999999999998740 11111222333
Q ss_pred HHHHHh---hcc-ccCCCCcEEEEEeeccccc-Ccc------cHHHHHHHHHHHHHHHHcCCCCCceEEEEeeecccccc
Q 040787 74 KTWINT---NVL-PFYPASNIFLIMVGNEISL-DEN------FRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSH 142 (436)
Q Consensus 74 ~~wv~~---~v~-~~~~~~~I~~I~VGNEvl~-~~~------~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~ 142 (436)
.+|+++ .|. .|.....|.++=+.||+.. ... ....+.+.++.+.+++++.+-.. +|...... |..
T Consensus 102 ~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~--~i~~~~~~--~~~ 177 (281)
T PF00150_consen 102 QAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH--LIIVGGGG--WGA 177 (281)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS--EEEEEEHH--HHT
T ss_pred HHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc--eeecCCCc--ccc
Confidence 344332 233 3324456889999999987 221 23678889999999999998764 33332211 211
Q ss_pred CCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHH
Q 040787 143 SDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDA 222 (436)
Q Consensus 143 s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da 222 (436)
. + +.. ..-.| -.....+.+.+|.|+.+....... . ......+.+...++.
T Consensus 178 ~-------~-~~~-~~~~P---~~~~~~~~~~~H~Y~~~~~~~~~~------------~------~~~~~~~~~~~~~~~ 227 (281)
T PF00150_consen 178 D-------P-DGA-AADNP---NDADNNDVYSFHFYDPYDFSDQWN------------P------GNWGDASALESSFRA 227 (281)
T ss_dssp B-------H-HHH-HHHST---TTTTTSEEEEEEEETTTCHHTTTS------------T------CSHHHHHHHHHHHHH
T ss_pred c-------c-chh-hhcCc---ccccCceeEEeeEeCCCCcCCccc------------c------ccchhhhHHHHHHHH
Confidence 0 0 000 00011 012455677777777554321110 0 001112344455555
Q ss_pred HHHHHHHcCCCCceEEEeeecCCCCCC
Q 040787 223 ARSALNSLGYNNVEIVVTETGWPSKGD 249 (436)
Q Consensus 223 ~~~a~~k~g~~~~~i~VsEtGWPs~G~ 249 (436)
....+.+. +++|+|+|.|+++...
T Consensus 228 ~~~~~~~~---g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 228 ALNWAKKN---GKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHHHHHT---TSEEEEEEEESSTTTS
T ss_pred HHHHHHHc---CCeEEEeCcCCcCCCC
Confidence 55555554 4799999999996544
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.49 E-value=0.013 Score=57.29 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeeccc-ccccCCcccc
Q 040787 227 LNSLGYNNVEIVVTETGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDE-NLKQGPISER 305 (436)
Q Consensus 227 ~~k~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~F~~FdE-~~K~g~~~E~ 305 (436)
|++++--+++|.|||++-|..+ +.+.|+.+++++++.+.+. | + -.-+++..+.|. .|.++ .
T Consensus 175 l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~----~ 236 (254)
T smart00633 175 LDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG----G 236 (254)
T ss_pred HHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----C
Confidence 3333333689999999998752 3478899999999988764 2 1 123455566653 45543 4
Q ss_pred ceeeecCCCCeeeee
Q 040787 306 SFGLFKPDRTANFDV 320 (436)
Q Consensus 306 ~wGlf~~d~~~ky~l 320 (436)
+-|||+.|+++|-.+
T Consensus 237 ~~~L~d~~~~~kpa~ 251 (254)
T smart00633 237 APLLFDANYQPKPAY 251 (254)
T ss_pred CceeECCCCCCChhh
Confidence 679999999988643
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.35 E-value=0.011 Score=57.24 Aligned_cols=210 Identities=16% Similarity=0.157 Sum_probs=114.5
Q ss_pred CCCCeEEecCCCHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEEEEEeeccccc-C--ccc
Q 040787 29 TSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISL-D--ENF 105 (436)
Q Consensus 29 ~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~--~~~ 105 (436)
.+++-.=-|+..+.-. ....+++-+-.+|...... ..|+.. |... ...++.|..=||+=. . ..+
T Consensus 18 ~~~sW~YnW~~~~~~~--~~~~~~efvPmlwg~~~~~--------~~~~~~-v~~~--~~~~~~ll~fNEPD~~~qsn~~ 84 (239)
T PF11790_consen 18 SNVSWYYNWGSSPSGS--LDSAGLEFVPMLWGPGSDD--------DDWLAN-VQNA--HPGSKHLLGFNEPDLPGQSNMS 84 (239)
T ss_pred CCcEEEeCCCCCCCCC--CCCCceeEeecccCCCCCc--------hHHHHH-HHhh--ccCccceeeecCCCCCCCCCCC
Confidence 3466664445443211 1122378888888654321 123322 2222 256899999999976 2 345
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhh--hcCCCceeccCCCCcc
Q 040787 106 RKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNN--ATGSPFAINPYPYYAY 183 (436)
Q Consensus 106 ~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~--~~~d~~~vN~yPff~~ 183 (436)
+.+.+...+++.+.|+. ..+++..|.....-.. +|+.. .-|...++-.. +..|++.||.| ..
T Consensus 85 p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~~--~~~g~-------~Wl~~F~~~~~~~~~~D~iavH~Y---~~ 148 (239)
T PF11790_consen 85 PEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNGG--TPGGL-------DWLSQFLSACARGCRVDFIAVHWY---GG 148 (239)
T ss_pred HHHHHHHHHHHHhHhhc----CCcEEECCeecccCCC--CCCcc-------HHHHHHHHhcccCCCccEEEEecC---Cc
Confidence 77777777776666663 2477776654211100 11111 22333333222 46777777777 11
Q ss_pred CCCCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHH
Q 040787 184 NSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDKEPWATIDKAKDY 263 (436)
Q Consensus 184 ~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y 263 (436)
+. .-|...|+.+ .++.| +||+|+|.|+...+. ..+.+.++.|
T Consensus 149 --~~--------------------------~~~~~~i~~~---~~~~~---kPIWITEf~~~~~~~----~~~~~~~~~f 190 (239)
T PF11790_consen 149 --DA--------------------------DDFKDYIDDL---HNRYG---KPIWITEFGCWNGGS----QGSDEQQASF 190 (239)
T ss_pred --CH--------------------------HHHHHHHHHH---HHHhC---CCEEEEeecccCCCC----CCCHHHHHHH
Confidence 10 1122233333 34444 899999999877222 3788899999
Q ss_pred HHHHHHHHhhcCCCCCCCCCcccEEEEeecccccccCCccccceeeecCCCCe
Q 040787 264 YSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGPISERSFGLFKPDRTA 316 (436)
Q Consensus 264 ~~~lv~~~~~~~gTp~rpg~~~~~y~F~~FdE~~K~g~~~E~~wGlf~~d~~~ 316 (436)
++..+..+.+. |. --.+++|..++ .+. .....-.|++.+|++
T Consensus 191 l~~~~~~ld~~------~~-VeryawF~~~~-~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 191 LRQALPWLDSQ------PY-VERYAWFGFMN-DGS---GVNPNSALLDADGSL 232 (239)
T ss_pred HHHHHHHHhcC------CC-eeEEEeccccc-ccC---CCccccccccCCCCc
Confidence 99999988653 22 13456777322 222 345566677777743
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.11 E-value=0.029 Score=55.90 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=56.2
Q ss_pred eeEEecCCCCC---CCCHHHH---HHHHHhCCCCeEEecC--CCHHHHHHHHhCCCeEEEeeCCCCchh---------cc
Q 040787 5 IGINYGNLGDN---LPSPEDT---VKLLQSTSIQKIRLYS--PDIPMIKALANSGIDIVVGTQNSEIPA---------LA 67 (436)
Q Consensus 5 ~Gvnyg~~~~n---~ps~~~v---~~~l~~~~~~~VRiY~--~d~~vl~A~~~~gi~V~lgv~n~~~~~---------~~ 67 (436)
-|||+...... .++.++. ++++|++|++.||+.. .++..+.++...||-|+..++...... ..
T Consensus 18 ~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~ 97 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDA 97 (298)
T ss_dssp EEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTT
T ss_pred EEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccCC
Confidence 58998764322 2455544 4578999999999963 357899999999999998887621100 01
Q ss_pred CCH---HHHHHHHHhhccccCCCCcEEEEEeeccc
Q 040787 68 SDP---NAAKTWINTNVLPFYPASNIFLIMVGNEI 99 (436)
Q Consensus 68 ~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNEv 99 (436)
.++ +.+.+.+++.|..+.....|..=.+|||.
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 122 23334455566655444568899999999
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.76 E-value=0.25 Score=52.17 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCCeEEec--------C----CC-------HHHHHHHHhCCCeEEEeeCCCCchh-cc-----CCHHHH
Q 040787 19 PEDTVKLLQSTSIQKIRLY--------S----PD-------IPMIKALANSGIDIVVGTQNSEIPA-LA-----SDPNAA 73 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRiY--------~----~d-------~~vl~A~~~~gi~V~lgv~n~~~~~-~~-----~~~~~a 73 (436)
-++.+++|+++|++.+|+= + .| ..++..+.+.||+++|.+.--+++. +. .+++..
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 4467889999999999862 1 12 1688999999999999996434332 11 112211
Q ss_pred ---HHHHHhhccccCCCCcEEEEEeecccc
Q 040787 74 ---KTWINTNVLPFYPASNIFLIMVGNEIS 100 (436)
Q Consensus 74 ---~~wv~~~v~~~~~~~~I~~I~VGNEvl 100 (436)
.+..+. +...++ +.|+..+.=||+.
T Consensus 136 ~~f~~ya~~-~~~~~~-d~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAV-VAERLG-DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHH-HHHHhC-CcCCEEEEecCcc
Confidence 222222 223333 3677777778875
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.25 E-value=0.035 Score=58.92 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCCeEEec--------C-----CCH-------HHHHHHHhCCCeEEEeeCCCCchh-cc-----CCHHH
Q 040787 19 PEDTVKLLQSTSIQKIRLY--------S-----PDI-------PMIKALANSGIDIVVGTQNSEIPA-LA-----SDPNA 72 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRiY--------~-----~d~-------~vl~A~~~~gi~V~lgv~n~~~~~-~~-----~~~~~ 72 (436)
-+|.+++|+++|++..|+= + .|+ +++..|...||+.+|.+.--+++. +. .++..
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 4578999999999999874 1 122 689999999999999998655543 11 11111
Q ss_pred HHH---HHHhhccccCCCCcEEEEEeeccccc-------Cc------c-------cHHHHHHHHHHHHHHHHcCCCCCce
Q 040787 73 AKT---WINTNVLPFYPASNIFLIMVGNEISL-------DE------N-------FRKQLLPAMQNMQNALDAGSLGGKI 129 (436)
Q Consensus 73 a~~---wv~~~v~~~~~~~~I~~I~VGNEvl~-------~~------~-------~~~~l~~am~~v~~aL~~~gl~~~I 129 (436)
++. ..+..+..+ .+.|+.-+.=||+.. .. . ....++-|-..+.+++++.... .
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--G 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--S
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--e
Confidence 111 111112222 367999999999864 00 0 1233555555666666665543 4
Q ss_pred EEEEeeecc
Q 040787 130 KVSTVHSMS 138 (436)
Q Consensus 130 ~Vst~~~~~ 138 (436)
+|+.+++..
T Consensus 216 ~IGi~~~~~ 224 (455)
T PF00232_consen 216 KIGIALNFS 224 (455)
T ss_dssp EEEEEEEEE
T ss_pred EEecccccc
Confidence 677666554
No 15
>PLN02814 beta-glucosidase
Probab=95.43 E-value=1.5 Score=47.23 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC-----CCH-------HHHHHHHhCCCeEEEeeCCCCchh-ccC------CHHH
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS-----PDI-------PMIKALANSGIDIVVGTQNSEIPA-LAS------DPNA 72 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~-----~d~-------~vl~A~~~~gi~V~lgv~n~~~~~-~~~------~~~~ 72 (436)
-.|.+++||++|++.-|+ += .|+ +++..+.+.||+-+|.+.--+++. +.. +++.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~ 158 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKI 158 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhH
Confidence 457899999999887765 21 232 689999999999999998666654 211 1111
Q ss_pred H---HHHHHhhccccCCCCcEEEEEeecccc
Q 040787 73 A---KTWINTNVLPFYPASNIFLIMVGNEIS 100 (436)
Q Consensus 73 a---~~wv~~~v~~~~~~~~I~~I~VGNEvl 100 (436)
+ .+..+.-+..| .+.|+.-+.=||+.
T Consensus 159 i~~F~~YA~~~f~~f--gdrVk~WiT~NEP~ 187 (504)
T PLN02814 159 IEDFTAFADVCFREF--GEDVKLWTTINEAT 187 (504)
T ss_pred HHHHHHHHHHHHHHh--CCcCCEEEeccccc
Confidence 1 11111112222 36788888888875
No 16
>PLN02998 beta-glucosidase
Probab=95.21 E-value=2.7 Score=45.26 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC-----CCH-------HHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS-----PDI-------PMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~-----~d~-------~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-+|.+++++++|++.-|+ += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 457889999999887775 21 232 689999999999999998666553
No 17
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.16 E-value=0.67 Score=54.17 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=59.4
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCeEEecC--CCHHHHHHHHhCCCeEEEeeCCCCc--------hhccC
Q 040787 5 IGINYGNLG---DNLPSPEDT---VKLLQSTSIQKIRLYS--PDIPMIKALANSGIDIVVGTQNSEI--------PALAS 68 (436)
Q Consensus 5 ~Gvnyg~~~---~n~ps~~~v---~~~l~~~~~~~VRiY~--~d~~vl~A~~~~gi~V~lgv~n~~~--------~~~~~ 68 (436)
.|+|+-... ..-.+++++ ++++|+.|++.||+-. .++..+.++.+.||.|+--++.+.. ..+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 578764321 112345443 5678999999999853 3468899999999999986542210 01122
Q ss_pred CHH---HHHHHHHhhccccCCCCcEEEEEeeccccc
Q 040787 69 DPN---AAKTWINTNVLPFYPASNIFLIMVGNEISL 101 (436)
Q Consensus 69 ~~~---~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 101 (436)
++. +..+-+++.|.++....-|..-.+|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 321 222335555665543456888899999854
No 18
>PLN02849 beta-glucosidase
Probab=95.03 E-value=2.6 Score=45.44 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC-----CCH-------HHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS-----PDI-------PMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~-----~d~-------~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-.|.++||+++|++.-|+ +- .|+ +++.++.+.||+-+|.+.--+++.
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 357789999999887774 31 132 689999999999999998656553
No 19
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=88.72 E-value=38 Score=36.40 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC------CCH-------HHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS------PDI-------PMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~------~d~-------~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-++.+++|+++|++..|+ +- .|+ .++.++.+.||+.+|.+.--+++.
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 367789999999887765 21 232 689999999999999998766654
No 20
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=88.53 E-value=39 Score=36.31 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC------CCH-------HHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS------PDI-------PMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~------~d~-------~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-+|.++||+++|++.-|+ +- .|+ .++..|.+.||+-+|.+.--+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 457899999999887775 21 232 688999999999999998666553
No 21
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.49 E-value=1.7 Score=44.74 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCCCeEEecCC-------C---------HHHHHHHHhCCCeEEEeeCCCCchhc----------------
Q 040787 19 PEDTVKLLQSTSIQKIRLYSP-------D---------IPMIKALANSGIDIVVGTQNSEIPAL---------------- 66 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRiY~~-------d---------~~vl~A~~~~gi~V~lgv~n~~~~~~---------------- 66 (436)
-++.++++++.|++.|||-.. . -.+|..+++.||+|+|+++....+..
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 346678889999999998432 1 15888899999999999975321110
Q ss_pred ----c-------CC---HHHHHHHHHhhccccCCCCcEEEEEeeccccc
Q 040787 67 ----A-------SD---PNAAKTWINTNVLPFYPASNIFLIMVGNEISL 101 (436)
Q Consensus 67 ----~-------~~---~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 101 (436)
. .+ .+.+.+.++..+..|-....|.++.|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 01 12344445544455544567999999999754
No 22
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=86.54 E-value=5.5 Score=41.00 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=78.6
Q ss_pred CCCeEEecC-CCHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEEEEEeeccccc--CcccH
Q 040787 30 SIQKIRLYS-PDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISL--DENFR 106 (436)
Q Consensus 30 ~~~~VRiY~-~d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~--~~~~~ 106 (436)
.+++|-+|+ .|++++..+...|++|++..-.. .. ..++++.-+.++++.| .+...-.+.+|-+==|-.. +....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 478888885 47899999999999999864322 22 2345555555655433 2322234566666555443 22335
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccc--hhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 107 KQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQ--TWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 107 ~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~--~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
..+...|+++|++|.+.+.+- .|+.+..+. |+....+ ++ .-|++..|++.|-.|=|..
T Consensus 132 ~~~t~llkelr~~l~~~~~~~--~Lsvav~~~-------p~~~~~~~yd~---------~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 132 YALTELVKETTKAFKKENPGY--QISFDVAWS-------PSCIDKRCYDY---------TGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCc--EEEEEEecC-------cccccccccCH---------HHHHhhCCEeeEEeecccC
Confidence 678899999999998876432 345443321 1111110 21 2255677888899988764
No 23
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=85.63 E-value=3.5 Score=41.87 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=70.9
Q ss_pred HHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccC-----CCCcEEEEEeeccccc----CcccHHHHHHHH
Q 040787 43 MIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFY-----PASNIFLIMVGNEISL----DENFRKQLLPAM 113 (436)
Q Consensus 43 vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~-----~~~~I~~I~VGNEvl~----~~~~~~~l~~am 113 (436)
+.+-+..+|++|+.|+---.-.........--.|--+|....+ ..-+|.+-=.|||.-. ....+.++....
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 4444568999999999742111100111334578777755432 1235888889999754 234567777777
Q ss_pred HHHHHHHHcC---CCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhh-cCCCceeccCCCCccCCCCCC
Q 040787 114 QNMQNALDAG---SLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNA-TGSPFAINPYPYYAYNSDPRP 189 (436)
Q Consensus 114 ~~v~~aL~~~---gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~-~~d~~~vN~yPff~~~~~p~~ 189 (436)
..+|+.|++. .+. +-+|.-|... |. ...++++|+-... ..|.+.-|.|+ +....++.
T Consensus 194 ~~Lr~il~~iy~~~~~-~P~v~gP~~~-------------~d---~~w~~~FL~~~g~~~vD~vT~H~Y~-lg~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEIYKNALP-GPLVVGPGGF-------------FD---ADWLKEFLKASGPGVVDAVTWHHYN-LGSGRDPA- 254 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEES-------------S----GGGHHHHHHHTTTT--SEEEEEEEE-E--TT-TT-
T ss_pred HHHHHHHHHHHhcCCC-CCeEECCCCC-------------CC---HHHHHHHHHhcCCCccCEEEEEecC-CCCCchHH-
Confidence 7777777652 011 1235544431 11 0234444444444 37889999985 33222221
Q ss_pred ccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCC
Q 040787 190 GYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDK 251 (436)
Q Consensus 190 ~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~ 251 (436)
. ++ ...++ .|-+-+..++..+...+++.+ ++++++|+|||=...|+..
T Consensus 255 l-~~--------~~l~p----~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~~ 302 (319)
T PF03662_consen 255 L-IE--------DFLNP----SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGAP 302 (319)
T ss_dssp --HH--------HHTS------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--T
T ss_pred H-HH--------HhcCh----hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCCC
Confidence 0 01 11122 122223333444444444444 6799999999966655543
No 24
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=81.44 E-value=4.7 Score=42.93 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=103.8
Q ss_pred HHHHHhhccccCCCCcEEEEEeeccccc-CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccc
Q 040787 74 KTWINTNVLPFYPASNIFLIMVGNEISL-DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQ 152 (436)
Q Consensus 74 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~ 152 (436)
...|.+.|.+|--...|.+-..-||.+. .+.+...++...+.+.++|+..+-+.-|.|+-+ ..-|.. |.|-.+.
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~--~sp~~~-~~pyN~r-- 197 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP--ASPWPQ-YAPYNAR-- 197 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCc--CCcccc-cCCcccc--
Confidence 4567777777765667888889999776 777888999999999999998776654444433 322322 2122221
Q ss_pred hhhhHHHhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccch-HHHHHHHHHHHHHHHcC
Q 040787 153 TWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMN-MFDAQVDAARSALNSLG 231 (436)
Q Consensus 153 ~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n-~~da~~da~~~a~~k~g 231 (436)
.++|+=.-++||+|.. +| |+.-. . .|-. ++| .-..+|
T Consensus 198 ---------------~~vDya~~hLY~hyd~--sl------~~r~s--~---------~yg~~~l~--------i~~~~g 235 (587)
T COG3934 198 ---------------FYVDYAANHLYRHYDT--SL------VSRVS--T---------VYGKPYLD--------IPTIMG 235 (587)
T ss_pred ---------------eeeccccchhhhhccC--Ch------hheee--e---------eecchhhc--------cchhcc
Confidence 2567778899997763 33 11100 0 1110 111 011223
Q ss_pred CCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeecccccc--cC--Cccccce
Q 040787 232 YNNVEIVVTETGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLK--QG--PISERSF 307 (436)
Q Consensus 232 ~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~F~~FdE~~K--~g--~~~E~~w 307 (436)
-+||+.-|.|-|++=... +.+.|.-- +..+....| .+--..-|+=|-+--. ++ ...|-.|
T Consensus 236 --~~pV~leefGfsta~g~e-------~s~ayfiw-~~lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~f 299 (587)
T COG3934 236 --WQPVNLEEFGFSTAFGQE-------NSPAYFIW-IRLALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEF 299 (587)
T ss_pred --cceeeccccCCccccccc-------ccchhhhh-hhhHHhhcC------CceEEEEecCCccCCCCCCCcccccccee
Confidence 379999999999974332 11122111 111222111 0122334555542111 11 1457789
Q ss_pred eeecCCCCeeeee
Q 040787 308 GLFKPDRTANFDV 320 (436)
Q Consensus 308 Glf~~d~~~ky~l 320 (436)
||.+.|+.+|+..
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999865
No 25
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=79.89 E-value=20 Score=35.75 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=52.8
Q ss_pred CHHHHHHHHhCCCeEEEeeCCCC--------chhccCCHHHHHHHHHhhccccCCCCcEEEEEeecccccCcccHHHHHH
Q 040787 40 DIPMIKALANSGIDIVVGTQNSE--------IPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLP 111 (436)
Q Consensus 40 d~~vl~A~~~~gi~V~lgv~n~~--------~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~l~~ 111 (436)
++.++.+++..+++|++.|.+.. ...+.++++.-+..++ +|..+...-.+.+|-+-=|.+. .......+.
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~ 124 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVP-PEDREAYTQ 124 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCC-HHHHHHHHH
Confidence 36788888889999999887643 1234455443333333 3333322224567766556553 233556889
Q ss_pred HHHHHHHHHHcCCC
Q 040787 112 AMQNMQNALDAGSL 125 (436)
Q Consensus 112 am~~v~~aL~~~gl 125 (436)
.|+.+|++|.+.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999999987664
No 26
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=78.79 E-value=99 Score=33.23 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC------CCH-------HHHHHHHhCCCeEEEeeCCCCch
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS------PDI-------PMIKALANSGIDIVVGTQNSEIP 64 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~------~d~-------~vl~A~~~~gi~V~lgv~n~~~~ 64 (436)
-++.++||+++|++..|+ +- .|+ .++.++.+.||+.+|.+.=-+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 467899999998877764 31 232 68999999999999999644444
No 27
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=76.94 E-value=21 Score=42.01 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCeEEecC--CCHHHHHHHHhCCCeEEEeeCCCCc-----hhccCCHH
Q 040787 5 IGINYGNLG---DNLPSPEDT---VKLLQSTSIQKIRLYS--PDIPMIKALANSGIDIVVGTQNSEI-----PALASDPN 71 (436)
Q Consensus 5 ~Gvnyg~~~---~n~ps~~~v---~~~l~~~~~~~VRiY~--~d~~vl~A~~~~gi~V~lgv~n~~~-----~~~~~~~~ 71 (436)
-|||+-... ..-.+++++ ++++|++|++.||+-. .++..+.++.+.||.|+--++.+.. ..+..++.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 578874321 123455554 5678999999999943 3578999999999999988654211 11222222
Q ss_pred ---HHHHHHHhhccccCCCCcEEEEEeeccccc
Q 040787 72 ---AAKTWINTNVLPFYPASNIFLIMVGNEISL 101 (436)
Q Consensus 72 ---~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 101 (436)
+..+-+++.|.+.....-|..-++|||.-.
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 222334455555543456889999999743
No 28
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=71.54 E-value=1.5e+02 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC------CCH-------HHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS------PDI-------PMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~------~d~-------~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-.|.+++|+++|++.-|+ += .|+ +++..|.+.||+-+|.+.--+++.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 457899999999887764 31 232 689999999999999998766653
No 29
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=68.82 E-value=7.3 Score=35.78 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeC
Q 040787 22 TVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQ 59 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~ 59 (436)
-.++|+.+|+++||+.+.+|.=+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36899999999999999999999999999999975544
No 30
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=68.15 E-value=19 Score=27.15 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHhCCCCeEEecCCC-----HHHHHHHHhCCCeEEEeeCC
Q 040787 16 LPSPEDTVKLLQSTSIQKIRLYSPD-----IPMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 16 ~ps~~~v~~~l~~~~~~~VRiY~~d-----~~vl~A~~~~gi~V~lgv~n 60 (436)
.-++++.++..++.|++.|=+=|-+ +...+.++..||+|+.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3468899999999999999887766 45667777899999999864
No 31
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=64.17 E-value=14 Score=36.88 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=52.9
Q ss_pred CcEEEEEeeccccc----C---cc--cHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCccccc----ccchh
Q 040787 88 SNIFLIMVGNEISL----D---EN--FRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSG----EFQTW 154 (436)
Q Consensus 88 ~~I~~I~VGNEvl~----~---~~--~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g----~F~~~ 154 (436)
..|..++||.|-.- . .. .+..|+..+.+||+.| | ...|||++..|+.+.. +-|..| .|.
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 56899999999864 1 11 2567888888998887 2 2479999999998765 434433 343
Q ss_pred hhHHHhhhhhhhhhcCCCceeccCC
Q 040787 155 LVDVMKGFLGFNNATGSPFAINPYP 179 (436)
Q Consensus 155 ~~~~i~~~l~fL~~~~d~~~vN~yP 179 (436)
|.|+- -..+.|+++|+.|.
T Consensus 90 ----LDpLW--a~~~IDfIGID~Y~ 108 (299)
T PF13547_consen 90 ----LDPLW--ADPNIDFIGIDNYF 108 (299)
T ss_pred ----Ccccc--cCCcCCEEEeeccc
Confidence 11211 12478899998885
No 32
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=62.31 E-value=13 Score=34.83 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=30.5
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEE
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIV 55 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~ 55 (436)
.|+|+.+|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999999878889999999987
No 33
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=61.98 E-value=13 Score=34.99 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=31.7
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEee
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGT 58 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv 58 (436)
+|+|+.+|+++||+.+.++.=+.++.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 689999999999999999877889999999997333
No 34
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=61.80 E-value=1.7e+02 Score=30.56 Aligned_cols=140 Identities=12% Similarity=0.133 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHH---hCCCCeEEecCCC--------------HHHHHHHHhC-CCe-EEEeeCCCCchhccCCHHHHHHH
Q 040787 16 LPSPEDTVKLLQ---STSIQKIRLYSPD--------------IPMIKALANS-GID-IVVGTQNSEIPALASDPNAAKTW 76 (436)
Q Consensus 16 ~ps~~~v~~~l~---~~~~~~VRiY~~d--------------~~vl~A~~~~-gi~-V~lgv~n~~~~~~~~~~~~a~~w 76 (436)
.-++++|++.++ ..|++.|.+.+.| .++++++... |++ +-++--.. ..+ +.+. .+.
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~--~~el-l~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDP--EDI--DEEL-LEA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCCh--hhC--CHHH-HHH
Confidence 456788876543 4688888875321 2566666543 442 44432111 111 1221 122
Q ss_pred HHhhccccCCCCcEEEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccc
Q 040787 77 INTNVLPFYPASNIFLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSS 148 (436)
Q Consensus 77 v~~~v~~~~~~~~I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~ 148 (436)
++++ + .....|.+|=|-.. .......++.+++.+|+.+. .|.|++..-.+ +| .
T Consensus 241 m~~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~------gi~i~~~~IvG-----~P-g- 301 (414)
T TIGR01579 241 IASE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRP------DYAFGTDIIVG-----FP-G- 301 (414)
T ss_pred HHhc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCC------CCeeeeeEEEE-----CC-C-
Confidence 2221 0 01234555544433 23456778888888877432 24555543322 32 1
Q ss_pred cccchhhhHHHhhhhhhhhhcCCCceeccCCCCccCC
Q 040787 149 GEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNS 185 (436)
Q Consensus 149 g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~ 185 (436)
| ..+.+...++|+.+. .+-.+++|||--.-+
T Consensus 302 ----E-T~ed~~~tl~~i~~~-~~~~~~~~~~sp~pG 332 (414)
T TIGR01579 302 ----E-SEEDFQETLRMVKEI-EFSHLHIFPYSARPG 332 (414)
T ss_pred ----C-CHHHHHHHHHHHHhC-CCCEEEeeecCCCCC
Confidence 1 115567778888654 455678887655433
No 35
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.17 E-value=33 Score=35.56 Aligned_cols=60 Identities=20% Similarity=0.379 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCCC---CCCHHHHHHHHHHHHHHHhhc
Q 040787 212 YMNMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDKEP---WATIDKAKDYYSGLITHLRSK 274 (436)
Q Consensus 212 y~n~~da~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~~~---~as~~na~~y~~~lv~~~~~~ 274 (436)
|.|-|++-+--........|++.++|+++ |||.|.-.+- ..|-..++.-++++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 44555544433333445568888999987 9999976321 245555566667777777653
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=60.09 E-value=72 Score=29.17 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCCeEEe----------cCC------------C--HHHHHHHHhCCCeEEEeeCCCCc-hhccCCHHHHH-
Q 040787 21 DTVKLLQSTSIQKIRL----------YSP------------D--IPMIKALANSGIDIVVGTQNSEI-PALASDPNAAK- 74 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRi----------Y~~------------d--~~vl~A~~~~gi~V~lgv~n~~~-~~~~~~~~~a~- 74 (436)
+.++.|+..||+.|=+ |.. | ..+|+++.+.||+|++|++.+.. -. ..+.+...
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~~ 102 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEAE 102 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHHH
Confidence 3466778889887722 211 1 25899999999999999996521 11 12221110
Q ss_pred --HHHHhhcc-ccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcC
Q 040787 75 --TWINTNVL-PFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAG 123 (436)
Q Consensus 75 --~wv~~~v~-~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~ 123 (436)
.-+.+-+. .|....-+.+-=+-.|+-. . .....++.+.+.+.|+..
T Consensus 103 ~~~~v~~el~~~yg~h~sf~GWYip~E~~~--~-~~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 103 RNKQVADELWQRYGHHPSFYGWYIPYEIDD--Y-NWNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEecccCC--c-ccchHHHHHHHHHHHHHh
Confidence 11222222 2322235677777777754 1 122355556666666543
No 37
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=59.98 E-value=47 Score=33.77 Aligned_cols=118 Identities=11% Similarity=0.195 Sum_probs=62.5
Q ss_pred HHHHh--CCCeEEEeeCC--C---CchhccCCHHHHHHHHHhhccccCCCCcEEEEEeeccccc----CcccHHHHHHHH
Q 040787 45 KALAN--SGIDIVVGTQN--S---EIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISL----DENFRKQLLPAM 113 (436)
Q Consensus 45 ~A~~~--~gi~V~lgv~n--~---~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~----~~~~~~~l~~am 113 (436)
.+++. .++||++.|-- . ....+.++++..+..++. +..+...-.+.+|-+==|... .......++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 58999988853 2 234455665544444433 322222224556655434322 123356788999
Q ss_pred HHHHHHHHcCCCCCceEEEEeeeccc--cccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 114 QNMQNALDAGSLGGKIKVSTVHSMSV--LSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 114 ~~v~~aL~~~gl~~~I~Vst~~~~~~--l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
+.+|++|.+.+. ...++.+..... +... | ++ .-|.+..|++.|-.|-|..
T Consensus 141 ~~lr~~l~~~~~--~~~ls~av~~~~~~~~~~-------~-d~---------~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 141 KELREAFEPEAP--RLLLTAAVSAGKETIDAA-------Y-DI---------PEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHHHHHhhCc--CeEEEEEecCChHHHhhc-------C-CH---------HHHhhhcceEEEecccCCC
Confidence 999999988731 133554432211 1111 1 11 1245667888888888764
No 38
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=58.97 E-value=43 Score=30.79 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=49.3
Q ss_pred HHHHHHHhC--CCeEEEeeCCCCchh---ccCCHHHHHHHHHhhccccCCCCcEEEEEeecccccCc--ccHHHHHHHHH
Q 040787 42 PMIKALANS--GIDIVVGTQNSEIPA---LASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDE--NFRKQLLPAMQ 114 (436)
Q Consensus 42 ~vl~A~~~~--gi~V~lgv~n~~~~~---~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~--~~~~~l~~am~ 114 (436)
..++.++.. |++|++.|....... +.++++..++.++ ++..+...-++.+|-+==|..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456666665 999999998643322 3455544444332 333333223566666644544311 13578999999
Q ss_pred HHHHHHHcCCC
Q 040787 115 NMQNALDAGSL 125 (436)
Q Consensus 115 ~v~~aL~~~gl 125 (436)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987643
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=58.88 E-value=27 Score=37.38 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCeEEe-------c--C---CC-------HHHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------Y--S---PD-------IPMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y--~---~d-------~~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-+|.++||+++|++.-|+ + + .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 467899999999888775 2 1 13 2689999999999999998766654
No 40
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=52.93 E-value=1.5e+02 Score=29.66 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=64.3
Q ss_pred HHHHHhC--CCeEEEeeCCC----CchhccCCHHHHHHHHHhhccccCCCCcEEEEEeeccccc-CcccHHHHHHHHHHH
Q 040787 44 IKALANS--GIDIVVGTQNS----EIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISL-DENFRKQLLPAMQNM 116 (436)
Q Consensus 44 l~A~~~~--gi~V~lgv~n~----~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~~~~~l~~am~~v 116 (436)
+.+++.. +++|++.|... ....+.++.+..+..++ +|..+...-.+.+|-+==|... .......++..|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 5556654 89999988752 23445555443343333 3333222235677776444433 113345788899999
Q ss_pred HHHHHcCCC-CCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 117 QNALDAGSL-GGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 117 ~~aL~~~gl-~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
|+.|.+... .....++.+..... .... ...+.+.-|....|++.|-.|=|..
T Consensus 136 r~~l~~~~~~~~~~~lsi~v~~~~---------~~~~-----~~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 136 REALDKEGAEGKGYLLTIAVPAGP---------DKID-----KGYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHhcccCCceEEEEEecCCh---------HHHH-----hhhhhHHHHHhhCcEEEEeeeccCC
Confidence 999976410 01233554432211 1000 0001023356677888888887665
No 41
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=52.27 E-value=2.7e+02 Score=29.82 Aligned_cols=249 Identities=15% Similarity=0.167 Sum_probs=112.2
Q ss_pred HHHHHhCCCCeEEecCC---C--------------------HHHHHHHHhCCCeEEEeeCC--CCch-----hc------
Q 040787 23 VKLLQSTSIQKIRLYSP---D--------------------IPMIKALANSGIDIVVGTQN--SEIP-----AL------ 66 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~---d--------------------~~vl~A~~~~gi~V~lgv~n--~~~~-----~~------ 66 (436)
..+.+..||+.||+... | -.++..+.+.||+-+|-+.- ..+. .+
T Consensus 46 ~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 46 RELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNI 125 (486)
T ss_dssp HHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-
T ss_pred HHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCc
Confidence 33445689999999832 1 15888899999997666542 1110 00
Q ss_pred --cCCHHHHHHHHHhh----ccccCCCCcEE--EEEeeccccc----CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEe
Q 040787 67 --ASDPNAAKTWINTN----VLPFYPASNIF--LIMVGNEISL----DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTV 134 (436)
Q Consensus 67 --~~~~~~a~~wv~~~----v~~~~~~~~I~--~I~VGNEvl~----~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~ 134 (436)
..+.+.-.++|+.- +.+| ....|+ .+=|=||+=. ......+-....+.+.++|++.. ..++|+-+
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp 202 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGP 202 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCc
Confidence 12222222223222 2222 111121 5667899643 22334456666777777777654 35889877
Q ss_pred eeccccccCCcccccccchhhhHHHhhhhhhhhh---cCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccc
Q 040787 135 HSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNA---TGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIK 211 (436)
Q Consensus 135 ~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~---~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~ 211 (436)
-.. +. . . ..+...++|... ..||+..|.||.-...... ....... ..
T Consensus 203 ~~~--~~--~----------~-~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~-------------~~~~~~~--~~ 252 (486)
T PF01229_consen 203 AFA--WA--Y----------D-EWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN-------------ENMYERI--ED 252 (486)
T ss_dssp EEE--TT-------------T-HHHHHHHHHHHHCT---SEEEEEEE-BESESE-S-------------S-EEEEB----
T ss_pred ccc--cc--H----------H-HHHHHHHHHHhcCCCCCCEEEEEecccccccccc-------------hhHHhhh--hh
Confidence 211 11 0 0 345666677664 4688899999843211000 0000000 00
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCCC-CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEE-
Q 040787 212 YMNMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDKEP-WATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYL- 289 (436)
Q Consensus 212 y~n~~da~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~~~-~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y~- 289 (436)
...+++. +.-+...+...+++++++.++| |.+.-..... --|.-+|+-..++++..... .++.|-
T Consensus 253 ~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sy 319 (486)
T PF01229_consen 253 SRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSY 319 (486)
T ss_dssp HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEE
T ss_pred HHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhc
Confidence 1122222 2233344555678999999999 7775443211 23445555555656665432 123221
Q ss_pred --E-eecccccccCCccccceeeecCCCCee
Q 040787 290 --F-ALYDENLKQGPISERSFGLFKPDRTAN 317 (436)
Q Consensus 290 --F-~~FdE~~K~g~~~E~~wGlf~~d~~~k 317 (436)
| ..|.|.--+...+-.-|||++.+|-+|
T Consensus 320 wt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 320 WTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred cchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 2 234443333224556699999998655
No 42
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=52.16 E-value=24 Score=33.06 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=31.6
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEee
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGT 58 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv 58 (436)
.|+|+.+|++++|+.+.++.=+.++.+.||+|+=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 689999999999999998877889999999998444
No 43
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=50.34 E-value=3.5e+02 Score=29.06 Aligned_cols=140 Identities=12% Similarity=0.152 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCeEEecCC----------------------C-------------HHHHHHHHhCCCeEEEeeCCCCc
Q 040787 19 PEDTVKLLQSTSIQKIRLYSP----------------------D-------------IPMIKALANSGIDIVVGTQNSEI 63 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRiY~~----------------------d-------------~~vl~A~~~~gi~V~lgv~n~~~ 63 (436)
+.+|+++||.+.+..||-=+- | .+-++-+...|.++++.+-...
T Consensus 51 RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~Gs- 129 (501)
T COG3534 51 RKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGS- 129 (501)
T ss_pred HHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecCC-
Confidence 567899999998888884221 0 1467777788988888887653
Q ss_pred hhccCCHHHHHHHHHhhccc---c-----------CCCCcEEEEEeeccc---cc-CcccHHHHHHHHHHHHHHHHcCC-
Q 040787 64 PALASDPNAAKTWINTNVLP---F-----------YPASNIFLIMVGNEI---SL-DENFRKQLLPAMQNMQNALDAGS- 124 (436)
Q Consensus 64 ~~~~~~~~~a~~wv~~~v~~---~-----------~~~~~I~~I~VGNEv---l~-~~~~~~~l~~am~~v~~aL~~~g- 124 (436)
..+++|++||.=-=-+ | -| -+|++..+|||- -. +...++.-..+..+.+++.+-..
T Consensus 130 ----rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P-~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e~~k~~k~~d~ 204 (501)
T COG3534 130 ----RGVDEARNWVEYCNHPGGTYWSDLRRENGREEP-WNVKYWGLGNEMDGPWQCGHKTAPEYGRLANEYRKYMKYFDP 204 (501)
T ss_pred ----ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCC-cccceEEeccccCCCcccccccCHHHHHHHHHHHHHHhhcCc
Confidence 3567888897522111 0 13 389999999998 33 44444444445555555554211
Q ss_pred CCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccC
Q 040787 125 LGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPY 178 (436)
Q Consensus 125 l~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~y 178 (436)
....+-++++..... .+.++.+.+|+... +..|++.++.|
T Consensus 205 t~e~~v~g~a~~~n~----------~~~~W~~~vl~~~~----e~vD~ISlH~Y 244 (501)
T COG3534 205 TIENVVCGSANGANP----------TDPNWEAVVLEEAY----ERVDYISLHYY 244 (501)
T ss_pred cccceEEeecCCCCC----------CchHHHHHHHHHHh----hhcCeEEEEEe
Confidence 111233343322111 11144434554433 45799998888
No 44
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=50.31 E-value=1e+02 Score=32.27 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCCCeEEecCC----------CH------------HHHHHHHhCCCeEEEeeCCCC-------ch----hc
Q 040787 20 EDTVKLLQSTSIQKIRLYSP----------DI------------PMIKALANSGIDIVVGTQNSE-------IP----AL 66 (436)
Q Consensus 20 ~~v~~~l~~~~~~~VRiY~~----------d~------------~vl~A~~~~gi~V~lgv~n~~-------~~----~~ 66 (436)
++....+++.||+.|||.-. +| ++++.+.+.||+|++.+-... .. ..
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56778899999999999732 32 346667789999999855321 11 11
Q ss_pred cCC----HHHHHHHHHhhcc-ccCCCCcEEEEEeeccccc--CcccHHHH-HHHHHHHHHHHHcC
Q 040787 67 ASD----PNAAKTWINTNVL-PFYPASNIFLIMVGNEISL--DENFRKQL-LPAMQNMQNALDAG 123 (436)
Q Consensus 67 ~~~----~~~a~~wv~~~v~-~~~~~~~I~~I~VGNEvl~--~~~~~~~l-~~am~~v~~aL~~~ 123 (436)
... ......| +.|. .|-....|.+|-+=||+.. .+.....- -+|...|++.+...
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 110 1112222 1222 3333567888888899983 22333333 47888887666544
No 45
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.72 E-value=2.3e+02 Score=29.83 Aligned_cols=75 Identities=11% Similarity=0.070 Sum_probs=41.0
Q ss_pred EEEEEeeccc----cc----CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhh
Q 040787 90 IFLIMVGNEI----SL----DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKG 161 (436)
Q Consensus 90 I~~I~VGNEv----l~----~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~ 161 (436)
...|.+|=|- +. .......++.+++.+|+++. .+.+++..-.+ +| - | .+..+..
T Consensus 257 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~------~i~i~~d~IvG-----~P-g-----E-T~ed~~~ 318 (439)
T PRK14328 257 CEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIP------DVAITTDIIVG-----FP-G-----E-TEEDFEE 318 (439)
T ss_pred CceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEEE-----CC-C-----C-CHHHHHH
Confidence 4456666333 22 23456778888888887632 35555533222 33 1 1 1145666
Q ss_pred hhhhhhhcCCCceeccCCCCcc
Q 040787 162 FLGFNNATGSPFAINPYPYYAY 183 (436)
Q Consensus 162 ~l~fL~~~~d~~~vN~yPff~~ 183 (436)
.++|+.+. .+-.+++++|--.
T Consensus 319 tl~~i~~l-~~~~~~~~~~sp~ 339 (439)
T PRK14328 319 TLDLVKEV-RYDSAFTFIYSKR 339 (439)
T ss_pred HHHHHHhc-CCCcccceEecCC
Confidence 77887643 3556677775543
No 46
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=48.94 E-value=21 Score=37.09 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEee
Q 040787 22 TVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGT 58 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv 58 (436)
-.++|+.+|+++||+. .+|.=..++.+.||+|.==|
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEe
Confidence 3789999999999999 78888888999999997333
No 47
>PRK09989 hypothetical protein; Provisional
Probab=47.23 E-value=1.9e+02 Score=27.69 Aligned_cols=120 Identities=12% Similarity=0.160 Sum_probs=66.9
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEec---CCC-HHHHHHHHhCCCeEEE-eeCCCCch-------hccCCHH
Q 040787 4 FIGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLY---SPD-IPMIKALANSGIDIVV-GTQNSEIP-------ALASDPN 71 (436)
Q Consensus 4 ~~Gvnyg~~~~n~ps~~~v~~~l~~~~~~~VRiY---~~d-~~vl~A~~~~gi~V~l-gv~n~~~~-------~~~~~~~ 71 (436)
...+|...+-..+ |-.+.++.+++.||+.|-+. +.+ .++.+.++++||+|.. +.+...+. .......
T Consensus 3 ~~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09989 3 RFAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREH 81 (258)
T ss_pred ceeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHH
Confidence 3567888777666 56688999999999999984 334 4677888899999876 33211110 1111222
Q ss_pred HHHHHHHhhcc--ccCCCCcEEEEEeeccccc-C-cccHHHHHHHHHHHHHHHHcCCC
Q 040787 72 AAKTWINTNVL--PFYPASNIFLIMVGNEISL-D-ENFRKQLLPAMQNMQNALDAGSL 125 (436)
Q Consensus 72 ~a~~wv~~~v~--~~~~~~~I~~I~VGNEvl~-~-~~~~~~l~~am~~v~~aL~~~gl 125 (436)
.+.+.+++.+. .-+... +..+..|.-.-. . ......++..++.+-...+..|.
T Consensus 82 ~~~~~l~~~i~~A~~lg~~-~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 138 (258)
T PRK09989 82 EARADIDLALEYALALNCE-QVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGK 138 (258)
T ss_pred HHHHHHHHHHHHHHHhCcC-EEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333443332 112222 223445531111 1 22235577777777777766654
No 48
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.89 E-value=26 Score=36.43 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeC
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQ 59 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~ 59 (436)
.++|+.+|+++||+.. +|.=..+|.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 6899999999999999 89888899999999984443
No 49
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=45.61 E-value=1.6e+02 Score=29.43 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred HHHHHHHHh--CCCeEE--E--eeCCCC-chhccCCHHHHHHHHHhhccccCCCCcEEEEEeec-cccc-C--cccHHHH
Q 040787 41 IPMIKALAN--SGIDIV--V--GTQNSE-IPALASDPNAAKTWINTNVLPFYPASNIFLIMVGN-EISL-D--ENFRKQL 109 (436)
Q Consensus 41 ~~vl~A~~~--~gi~V~--l--gv~n~~-~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-Evl~-~--~~~~~~l 109 (436)
...+.+++. .++||+ + |=|... ...+.++++..+.++++ +..+...-.+.+|-+=- |... . ......+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 345566665 479998 4 334332 34566676655555443 33333222455554421 1111 1 1234567
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccc--hhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 110 LPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQ--TWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 110 ~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~--~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
+..|+.+|++|.+.|+ .+-|+.+..... . +....+. ++ .-|.+..|++.|=.|=|..
T Consensus 133 ~~~l~el~~~l~~~~~--~l~~~v~~~~~~-~----~~~~~~~~~d~---------~~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 133 IQLVIHLGETLHSANL--KLILVIPPPREK-G----NQNGLFTRKDF---------EKLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHHhhcCC--EEEEEEcCcccc-c----cccccccccCH---------HHHHhhccEEEEEeeccCC
Confidence 8899999999987764 244443321110 0 0001121 22 2255667888888887664
No 50
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=44.54 E-value=33 Score=35.86 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=33.6
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeCC
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n 60 (436)
.++|+.+|+++||+...+|.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 68999999999999999998889999999999855553
No 51
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.52 E-value=2.1e+02 Score=30.94 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=39.3
Q ss_pred EEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhh
Q 040787 91 FLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGF 162 (436)
Q Consensus 91 ~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~ 162 (436)
..|.+|=|-.. ...+......+++.+|+++. .|.|++..-.+ || | | .+..+...
T Consensus 268 ~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~------~i~i~~~~IvG-----fP---g---E-T~edf~~T 329 (502)
T PRK14326 268 PQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMP------DAAITTDIIVG-----FP---G---E-TEEDFQAT 329 (502)
T ss_pred CcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC------CCeEEEEEEEE-----CC---C---C-CHHHHHHH
Confidence 45555544433 33456778888888887532 36677643322 33 1 1 11556777
Q ss_pred hhhhhhcCCCceeccCCC
Q 040787 163 LGFNNATGSPFAINPYPY 180 (436)
Q Consensus 163 l~fL~~~~d~~~vN~yPf 180 (436)
++|+.+. -+-.+++++|
T Consensus 330 l~~i~~~-~~~~~~~f~~ 346 (502)
T PRK14326 330 LDVVREA-RFSSAFTFQY 346 (502)
T ss_pred HHHHHHc-CCCEEEEEee
Confidence 8888653 2334566554
No 52
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=44.41 E-value=31 Score=35.45 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCeEEecCCC-HHHHHHHHhCCCeEE
Q 040787 22 TVKLLQSTSIQKIRLYSPD-IPMIKALANSGIDIV 55 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY~~d-~~vl~A~~~~gi~V~ 55 (436)
..++|+.+|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4689999999999999999 887889999999986
No 53
>PRK08815 GTP cyclohydrolase; Provisional
Probab=43.99 E-value=34 Score=35.65 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=32.8
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeC
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQ 59 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~ 59 (436)
.|+|+.+|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888899999999984454
No 54
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.47 E-value=55 Score=28.58 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeC
Q 040787 21 DTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQ 59 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~ 59 (436)
.+.++|+.+|++.|=+-..-+.-+.+|++.||+|..+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999999999999999999999999877
No 55
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=43.33 E-value=1.8e+02 Score=30.56 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCC
Q 040787 105 FRKQLLPAMQNMQNALDAGSL 125 (436)
Q Consensus 105 ~~~~l~~am~~v~~aL~~~gl 125 (436)
....++..|+.+|++|...++
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCc
Confidence 345688899999999987664
No 56
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=43.21 E-value=4e+02 Score=28.90 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=51.2
Q ss_pred hCCCeEEEeeCCC--------Cc---hhccC---CH--HHHHHHHHhhccccCC-CCcEEEEEeeccccc--C-------
Q 040787 49 NSGIDIVVGTQNS--------EI---PALAS---DP--NAAKTWINTNVLPFYP-ASNIFLIMVGNEISL--D------- 102 (436)
Q Consensus 49 ~~gi~V~lgv~n~--------~~---~~~~~---~~--~~a~~wv~~~v~~~~~-~~~I~~I~VGNEvl~--~------- 102 (436)
+.+|+|+..-|-. .. ..+.. +. ++-.+.+.+-|..|-. +..|-+|.+.||+.. .
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 4579999999953 11 11211 10 1222334444555432 478999999999985 1
Q ss_pred -cccHHHHHHHHHH-HHHHHHcCCCCCceEE-EEeeec
Q 040787 103 -ENFRKQLLPAMQN-MQNALDAGSLGGKIKV-STVHSM 137 (436)
Q Consensus 103 -~~~~~~l~~am~~-v~~aL~~~gl~~~I~V-st~~~~ 137 (436)
.-++.++...|++ +.-+|++.+++.++|| ...|+.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 1236777888876 9999999999556887 445554
No 57
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=42.70 E-value=35 Score=36.41 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=32.8
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeC
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQ 59 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~ 59 (436)
.++|+.+|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6899999999999999999888999999999984444
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=42.65 E-value=63 Score=28.45 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhCCCCeEEecCC---------------------C--HHHHHHHHhCCCeEEEeeCCC
Q 040787 18 SPEDTVKLLQSTSIQKIRLYSP---------------------D--IPMIKALANSGIDIVVGTQNS 61 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRiY~~---------------------d--~~vl~A~~~~gi~V~lgv~n~ 61 (436)
+|+++++.||..+++.|-+|.- | .++++|+...||+|++-+...
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4789999999999999999753 1 268899999999998877654
No 59
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=42.39 E-value=55 Score=27.83 Aligned_cols=36 Identities=25% Similarity=0.550 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEec--CCC---HHHHHHHHhCCCeEE
Q 040787 20 EDTVKLLQSTSIQKIRLY--SPD---IPMIKALANSGIDIV 55 (436)
Q Consensus 20 ~~v~~~l~~~~~~~VRiY--~~d---~~vl~A~~~~gi~V~ 55 (436)
+.+.+.++++|++.|+++ +.. ..+|++|+..||++.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345567788999999888 343 479999999999865
No 60
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.96 E-value=37 Score=35.68 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=33.0
Q ss_pred HHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeC
Q 040787 22 TVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQ 59 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~ 59 (436)
..++|+.+|+++||+...+|.=..++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36899999999999999999888899999999984444
No 61
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=41.69 E-value=38 Score=37.01 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=34.2
Q ss_pred HHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeCC
Q 040787 22 TVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n 60 (436)
..++|+.+|+++||+...+|.=+.++.+.||+|.==++.
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 368999999999999999999999999999999855553
No 62
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=41.16 E-value=77 Score=30.48 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=26.0
Q ss_pred HHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHhh
Q 040787 228 NSLGYNNVEIVVTETGWPSKGDDKE---PWATIDKAKDYYSGLITHLRS 273 (436)
Q Consensus 228 ~k~g~~~~~i~VsEtGWPs~G~~~~---~~as~~na~~y~~~lv~~~~~ 273 (436)
..++++.++|++ .|||.|...+ ...+...++..+..+++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 456777755555 5999987632 223444455556666666654
No 63
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.77 E-value=4.6e+02 Score=27.64 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=40.0
Q ss_pred EEEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhh
Q 040787 90 IFLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKG 161 (436)
Q Consensus 90 I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~ 161 (436)
+..+.+|=|-.. .......++.+++.+|++. . .+.+++..-.+ +| . + ....+..
T Consensus 247 ~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~--~i~i~~d~IvG-----~P-g-----E-t~ed~~~ 308 (440)
T PRK14334 247 CEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P--DVVLSTDIIVG-----FP-G-----E-TEEDFQE 308 (440)
T ss_pred CCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C--CcEEEEeEEEE-----CC-C-----C-CHHHHHH
Confidence 455666544432 2345667888888887753 2 24555543322 32 1 1 1145566
Q ss_pred hhhhhhhcCCCceeccCCCCc
Q 040787 162 FLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 162 ~l~fL~~~~d~~~vN~yPff~ 182 (436)
.++|+.+. .+-.+++|+|--
T Consensus 309 tl~~i~~l-~~~~i~~f~ysp 328 (440)
T PRK14334 309 TLSLYDEV-GYDSAYMFIYSP 328 (440)
T ss_pred HHHHHHhc-CCCEeeeeEeeC
Confidence 77787653 355677777543
No 64
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=40.22 E-value=2.8e+02 Score=28.31 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=51.2
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhcc
Q 040787 3 PFIGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVL 82 (436)
Q Consensus 3 ~~~Gvnyg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~ 82 (436)
..+|||.-....+ |..++.++.+.+.+...|=+..-+|...+.+++.||+|+.-|+. +..|+.+.+..+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC-
Confidence 3578887443322 33456677777777877776666676678899999999987763 344455554322
Q ss_pred ccCCCCcEEEEEeeccc
Q 040787 83 PFYPASNIFLIMVGNEI 99 (436)
Q Consensus 83 ~~~~~~~I~~I~VGNEv 99 (436)
+ ..|+-|.|.
T Consensus 125 -----D--~vVaqG~EA 134 (320)
T cd04743 125 -----R--KFIFEGREC 134 (320)
T ss_pred -----C--EEEEecCcC
Confidence 1 356678887
No 65
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=38.49 E-value=1.6e+02 Score=25.31 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=56.4
Q ss_pred HHHHHhCCCCeEEecCCC----------HHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEEE
Q 040787 23 VKLLQSTSIQKIRLYSPD----------IPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFL 92 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d----------~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~ 92 (436)
++.|.+.|.++|-+.... .....++++.|++...-.......... .......|+++. ...+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--------~pda 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL--------RPDA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC--------SSSE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC--------CCcE
Confidence 355667788888877633 146778888999855433322211111 111222366443 2248
Q ss_pred EEeecccccCcccHHHHHHHHHHHHHHHHcCCC--CCceEEEEeeeccccccCCcccccccc
Q 040787 93 IMVGNEISLDENFRKQLLPAMQNMQNALDAGSL--GGKIKVSTVHSMSVLSHSDPPSSGEFQ 152 (436)
Q Consensus 93 I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl--~~~I~Vst~~~~~~l~~s~pPS~g~F~ 152 (436)
|+++|+.+. .-+..+|.+.|+ .++|.|-+-+........+ |....+.
T Consensus 72 ii~~~~~~a------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~ 120 (160)
T PF13377_consen 72 IICSNDRLA------------LGVLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTID 120 (160)
T ss_dssp EEESSHHHH------------HHHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEE
T ss_pred EEEcCHHHH------------HHHHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceec
Confidence 888887752 223345555665 3567777655444333333 4444444
No 66
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=37.59 E-value=75 Score=30.70 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCeEEEeeCCCCc---hhccCCHHHHHHHHHhhccccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHH
Q 040787 42 PMIKALANSGIDIVVGTQNSEI---PALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQN 118 (436)
Q Consensus 42 ~vl~A~~~~gi~V~lgv~n~~~---~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~ 118 (436)
..+++++..|++|++.|..... ..+.++++..+.++++ |..+...-.+.+|-+==|-.... .......|+++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHH
Confidence 4567777789999998876432 2244555554554443 33332222455666555554311 4567788999999
Q ss_pred HHHcCCC
Q 040787 119 ALDAGSL 125 (436)
Q Consensus 119 aL~~~gl 125 (436)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987654
No 67
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=37.19 E-value=1.3e+02 Score=34.72 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=51.7
Q ss_pred HHHHHHHhCCCCeEEecC--CCHHHHHHHHhCCCeEEEeeCCCCc--hhccCCHHHHHHHHHhhccccCCCCcEEEEEee
Q 040787 21 DTVKLLQSTSIQKIRLYS--PDIPMIKALANSGIDIVVGTQNSEI--PALASDPNAAKTWINTNVLPFYPASNIFLIMVG 96 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY~--~d~~vl~A~~~~gi~V~lgv~n~~~--~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VG 96 (436)
+.++++|..|++.||+.. -++.-++.+...||-|+--...... +.-..-.+.+..-+++.|.+.--...|.-=++|
T Consensus 325 ~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~g 404 (808)
T COG3250 325 RDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLG 404 (808)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecc
Confidence 445677889999999983 2367899999999999876664321 100111233333455555544222358888999
Q ss_pred ccccc
Q 040787 97 NEISL 101 (436)
Q Consensus 97 NEvl~ 101 (436)
||.-.
T Consensus 405 NE~~~ 409 (808)
T COG3250 405 NESGH 409 (808)
T ss_pred ccccC
Confidence 99753
No 68
>PRK09936 hypothetical protein; Provisional
Probab=36.73 E-value=4.6e+02 Score=26.48 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=70.6
Q ss_pred ceeEEecCCCCC-CCCHHHHHH---HHHhCCCCeEEec-----CCC--------HHHHHHHHhCCCeEEEeeCCCCc--h
Q 040787 4 FIGINYGNLGDN-LPSPEDTVK---LLQSTSIQKIRLY-----SPD--------IPMIKALANSGIDIVVGTQNSEI--P 64 (436)
Q Consensus 4 ~~Gvnyg~~~~n-~ps~~~v~~---~l~~~~~~~VRiY-----~~d--------~~vl~A~~~~gi~V~lgv~n~~~--~ 64 (436)
.-|+=|-+...+ --++++--+ .++..|++.+=+= +.| ...|+++.+.||+|.||++-|.. .
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q 100 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFM 100 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHH
Confidence 346667777666 456666554 5566888766442 223 36888899999999999998641 2
Q ss_pred hccCCHHHHHHHHHhhcccc---------CCCCcEE--EEEeeccccc--CcccHHHHHHHHHHHHHHHHcCCCCCceEE
Q 040787 65 ALASDPNAAKTWINTNVLPF---------YPASNIF--LIMVGNEISL--DENFRKQLLPAMQNMQNALDAGSLGGKIKV 131 (436)
Q Consensus 65 ~~~~~~~~a~~wv~~~v~~~---------~~~~~I~--~I~VGNEvl~--~~~~~~~l~~am~~v~~aL~~~gl~~~I~V 131 (436)
.+..+.++-+.|++..+... .+...++ +|-+==|... +...-..|+..++++.+.|.+. .+.|.|
T Consensus 101 ~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~--~kPv~I 178 (296)
T PRK09936 101 HQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVS--AKPVHI 178 (296)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCC--CCCeEE
Confidence 23334344444554332111 1223333 3333222222 2233456777788887777522 123545
Q ss_pred EE
Q 040787 132 ST 133 (436)
Q Consensus 132 st 133 (436)
|+
T Consensus 179 Sa 180 (296)
T PRK09936 179 SA 180 (296)
T ss_pred Ee
Confidence 54
No 69
>PRK07198 hypothetical protein; Validated
Probab=35.54 E-value=36 Score=35.63 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHhCCCCeE-EecCCCHHHHHHHHhCCCeEEEeeCC
Q 040787 23 VKLLQSTSIQKI-RLYSPDIPMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 23 ~~~l~~~~~~~V-RiY~~d~~vl~A~~~~gi~V~lgv~n 60 (436)
.++|+.+|+++| |+.+.++.=+.++.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 578999999999 99999998889999999999855553
No 70
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.16 E-value=6.2e+02 Score=27.49 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=40.5
Q ss_pred EEEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhh
Q 040787 90 IFLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKG 161 (436)
Q Consensus 90 I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~ 161 (436)
+..|.+|=|-.. ...+....+.+++.+|+++. .|.++|..-.+ || | | .+..+..
T Consensus 322 ~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p------~i~i~tdiIvG-----fP---g---E-T~edf~~ 383 (509)
T PRK14327 322 VEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP------NVALTTDIIVG-----FP---N---E-TDEQFEE 383 (509)
T ss_pred cceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC------CcEEeeeEEEe-----CC---C---C-CHHHHHH
Confidence 356666544432 23456788888888888642 35555543222 43 1 1 1144566
Q ss_pred hhhhhhhcCCCceeccCCCCcc
Q 040787 162 FLGFNNATGSPFAINPYPYYAY 183 (436)
Q Consensus 162 ~l~fL~~~~d~~~vN~yPff~~ 183 (436)
.++|+.+. -+-.+++|+|--.
T Consensus 384 Tl~~v~~l-~~d~~~~f~yspr 404 (509)
T PRK14327 384 TLSLYREV-GFDHAYTFIYSPR 404 (509)
T ss_pred HHHHHHHc-CCCeEEEeeeeCC
Confidence 67776643 3345666665443
No 71
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=34.81 E-value=83 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCeEEec--C--------CC---HHHHHHHHhCCCeEE
Q 040787 20 EDTVKLLQSTSIQKIRLY--S--------PD---IPMIKALANSGIDIV 55 (436)
Q Consensus 20 ~~v~~~l~~~~~~~VRiY--~--------~d---~~vl~A~~~~gi~V~ 55 (436)
+++.+.++++|++.|+++ . +. ...|++|+..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778999988887 3 33 368999999999975
No 72
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.60 E-value=4.9e+02 Score=27.64 Aligned_cols=137 Identities=10% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCCHHHHHHHH---HhCCCCeEEecCCC--------------HHHHHHHHh-CCC-eEEEeeCCCCchhccCCHHHHHHH
Q 040787 16 LPSPEDTVKLL---QSTSIQKIRLYSPD--------------IPMIKALAN-SGI-DIVVGTQNSEIPALASDPNAAKTW 76 (436)
Q Consensus 16 ~ps~~~v~~~l---~~~~~~~VRiY~~d--------------~~vl~A~~~-~gi-~V~lgv~n~~~~~~~~~~~~a~~w 76 (436)
.-++++|++.+ ...|++.|.+.+.+ .++|+++.+ .|+ .+-+...++. .+. .+
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~--~i~--~e----- 253 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPA--WMT--DR----- 253 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChh--hcC--HH-----
Confidence 34677877644 34689999888632 246777766 355 3433332221 111 11
Q ss_pred HHhhccccCCCCcEEEEEeeccc----cc----CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccc
Q 040787 77 INTNVLPFYPASNIFLIMVGNEI----SL----DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSS 148 (436)
Q Consensus 77 v~~~v~~~~~~~~I~~I~VGNEv----l~----~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~ 148 (436)
+.+.+... + ..+..+.+|=|- +. ...+....+.+++.+|+.+. .+.|++..-.+ +| .
T Consensus 254 ll~~l~~~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p------gi~i~~d~IvG-----~P-g- 318 (459)
T PRK14338 254 LIHAVARL-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIP------DVSLTTDIIVG-----HP-G- 318 (459)
T ss_pred HHHHHhcc-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEEE-----CC-C-
Confidence 11122221 1 123455554333 22 24567778888888877532 35565543322 22 1
Q ss_pred cccchhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 149 GEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 149 g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
| ....+...++|+.+. -+-.+++++|--
T Consensus 319 ----E-T~ed~~~ti~~l~~l-~~~~v~i~~ysp 346 (459)
T PRK14338 319 ----E-TEEQFQRTYDLLEEI-RFDKVHIAAYSP 346 (459)
T ss_pred ----C-CHHHHHHHHHHHHHc-CCCEeEEEecCC
Confidence 1 115566777887653 344566666543
No 73
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=33.54 E-value=55 Score=30.91 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHH-hhhhhhhhhcCCCceeccC-CCCccCCC
Q 040787 109 LLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVM-KGFLGFNNATGSPFAINPY-PYYAYNSD 186 (436)
Q Consensus 109 l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i-~~~l~fL~~~~d~~~vN~y-Pff~~~~~ 186 (436)
.-.+++.+.+.+...|+.+ |++........ |. + +.. +++++.+.+.+=|+.+++- +.+..
T Consensus 83 ~~~~~~~l~~~~~~~g~~G-v~l~~~~~~~~------~~-----~---~~~~~~~~~~~~~~~~pv~~H~g~~~~~~--- 144 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRG-VKLHPDLGGFD------PD-----D---PRLDDPIFEAAEELGLPVLIHTGMTGFPD--- 144 (273)
T ss_dssp HHHHHHHHHHHHHTTTESE-EEEESSETTCC------TT-----S---GHCHHHHHHHHHHHT-EEEEEESHTHHHH---
T ss_pred chhHHHHHHHhccccceee-eEecCCCCccc------cc-----c---HHHHHHHHHHHHhhccceeeeccccchhh---
Confidence 3367888888888888875 77665332111 11 0 233 3788888888877776643 10000
Q ss_pred CCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCC
Q 040787 187 PRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGWP 245 (436)
Q Consensus 187 p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~VsEtGWP 245 (436)
...-..+...+...+++ ||+++|++.+.|+|
T Consensus 145 --------------------------~~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 145 --------------------------APSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp --------------------------HHHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred --------------------------hhHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 01111122223333444 79999999999999
No 74
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=33.33 E-value=96 Score=33.21 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCeEEe-------cC-----CCH-------HHHHHHHhCCCeEEEeeCCCCchh
Q 040787 19 PEDTVKLLQSTSIQKIRL-------YS-----PDI-------PMIKALANSGIDIVVGTQNSEIPA 65 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRi-------Y~-----~d~-------~vl~A~~~~gi~V~lgv~n~~~~~ 65 (436)
-+|.++||+++|++.-|+ += .|+ +++..|.+.||+-+|.+.--+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 457889999999887765 31 132 689999999999999999766653
No 75
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.04 E-value=4.6e+02 Score=27.52 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 103 ENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 103 ~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
.....+++.+++.+|+++. .+.++|..-.+ || | | .+..+...++|+.+. .+-.+++++|--
T Consensus 255 ~~~~~~~~~~i~~lr~~~p------gi~i~~d~IvG-----fP---G---E-T~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 255 GYTNQQYRELVERLKTAMP------DISLQTDLIVG-----FP---S---E-TEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred CCCHHHHHHHHHHHHhhCC------CCEEEEEEEEE-----CC---C---C-CHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 3457788888888887643 35566544322 33 1 1 114566777887754 344566666544
No 76
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=32.96 E-value=86 Score=29.66 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=35.5
Q ss_pred HHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeCCCC
Q 040787 23 VKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSE 62 (436)
Q Consensus 23 ~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n~~ 62 (436)
.++|+.+||++||+-..+|.=..++.+.||+|.=-+++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 5789999999999999999888999999999998888653
No 77
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.90 E-value=6e+02 Score=26.66 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=43.1
Q ss_pred EEEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhh
Q 040787 90 IFLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKG 161 (436)
Q Consensus 90 I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~ 161 (436)
...+.+|=|-.. ..........+++.+|+.+. .+.|++..-.+ +| . | .+..+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~------~i~i~~d~IvG-----fP-g-----E-T~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVP------DASISSDIIVG-----FP-T-----E-TEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEEE-----CC-C-----C-CHHHHHH
Confidence 456777766553 23456677788888877632 36666654322 33 1 1 1155677
Q ss_pred hhhhhhhcCCCceeccCCCCcc
Q 040787 162 FLGFNNATGSPFAINPYPYYAY 183 (436)
Q Consensus 162 ~l~fL~~~~d~~~vN~yPff~~ 183 (436)
.++|+.+.. +-.+++++|--.
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccCC
Confidence 788877543 455677765544
No 78
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.75 E-value=4.5e+02 Score=25.13 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=63.8
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCeEEecCC---CH-HHHHHHHhCCCeEEE-eeCCCCch-------hccCCHHH
Q 040787 5 IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSP---DI-PMIKALANSGIDIVV-GTQNSEIP-------ALASDPNA 72 (436)
Q Consensus 5 ~Gvnyg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~---d~-~vl~A~~~~gi~V~l-gv~n~~~~-------~~~~~~~~ 72 (436)
+-+|.+..-..+ +.++.++.+++.||+.|-++.. ++ .+.+.++.+||+|.. +++..+.. ........
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09997 4 FSANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEE 82 (258)
T ss_pred eeeeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHH
Confidence 345655554444 4678899999999999998753 33 677788899999975 33332211 01111222
Q ss_pred HHHHHHhhcc--ccCCCCcEEEEEeeccc--ccCcccHHHHHHHHHHHHHHHHcCCC
Q 040787 73 AKTWINTNVL--PFYPASNIFLIMVGNEI--SLDENFRKQLLPAMQNMQNALDAGSL 125 (436)
Q Consensus 73 a~~wv~~~v~--~~~~~~~I~~I~VGNEv--l~~~~~~~~l~~am~~v~~aL~~~gl 125 (436)
..+.+++.+. ...... +..+..|.-. .........++..++.+-...++.|+
T Consensus 83 ~~~~~~~~i~~a~~lga~-~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 138 (258)
T PRK09997 83 FRDGVAAAIRYARALGNK-KINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDI 138 (258)
T ss_pred HHHHHHHHHHHHHHhCCC-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2233333322 222222 3334455421 11122245666777777666666553
No 79
>PRK05723 flavodoxin; Provisional
Probab=32.42 E-value=3.7e+02 Score=24.03 Aligned_cols=116 Identities=10% Similarity=0.119 Sum_probs=63.2
Q ss_pred ceeEEecCCCCCCC-CHHHHHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhcc
Q 040787 4 FIGINYGNLGDNLP-SPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVL 82 (436)
Q Consensus 4 ~~Gvnyg~~~~n~p-s~~~v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~ 82 (436)
.|+|-||....|-- =++++.+.|+..+++..-+...+..-+..+. .. .|+++++......+..+-...-+|+++...
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~ 79 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFA-PE-ALLAVTSTTGMGELPDNLMPLYSAIRDQLP 79 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCC-CC-eEEEEECCCCCCCCchhHHHHHHHHHhcCc
Confidence 47889987654432 2334445666666654333333332222221 12 467777764333333333444456665422
Q ss_pred ccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCCC
Q 040787 83 PFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLG 126 (436)
Q Consensus 83 ~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~ 126 (436)
..++..++..+-.|+-. +...--.+++.+.+.|++.|-.
T Consensus 80 ~~l~~~~~aVfGLGDs~-----Y~~~Fc~a~~~ld~~L~~lGA~ 118 (151)
T PRK05723 80 AAWRGLPGAVIALGDSS-----YGDTFCGGGEQMRELFAELGVR 118 (151)
T ss_pred cCCCCCEEEEEeEeCCc-----chHHHhHHHHHHHHHHHHCCCc
Confidence 23455566666677552 3345677899999999988754
No 80
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.02 E-value=4.4e+02 Score=26.02 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHhCCCCeEEecCCC-------HHHHHHHHh---CCCeEEEeeCCCCchhccCCHHHHHHHHHhhcccc
Q 040787 15 NLPSPEDTVKLLQSTSIQKIRLYSPD-------IPMIKALAN---SGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPF 84 (436)
Q Consensus 15 n~ps~~~v~~~l~~~~~~~VRiY~~d-------~~vl~A~~~---~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~ 84 (436)
+.++|.++++.|+..|+++|-+-.+. ..+++.... .--++.+|-|.=.......+.+..+. +.+.+..-
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~-va~aL~~~ 134 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEA-VAEALAEE 134 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHH-HHHHHHCC
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHH-HHHHHHHh
Confidence 57899999999999999999998876 234444433 33589999885221111112222221 33333333
Q ss_pred CC----CCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHh
Q 040787 85 YP----ASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMK 160 (436)
Q Consensus 85 ~~----~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~ 160 (436)
+| +..+..+-=||+- .+. .+-..++..|++.++. ++-|+|.+. +| .+.
T Consensus 135 ~~~~~~~~a~vlmGHGt~h-----~an---~~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P------------~~~ 186 (262)
T PF06180_consen 135 FPKKRKDEAVVLMGHGTPH-----PAN---AAYSALQAMLKKHGYP-NVFVGTVEG-------YP------------SLE 186 (262)
T ss_dssp S-TT-TTEEEEEEE---SC-----HHH---HHHHHHHHHHHCCT-T-TEEEEETTS-------SS------------BHH
T ss_pred ccccCCCCEEEEEeCCCCC-----Ccc---HHHHHHHHHHHhCCCC-eEEEEEeCC-------CC------------CHH
Confidence 33 3333333334432 122 2334456778887765 488999753 43 123
Q ss_pred hhhhhhhhcCCCceeccCCCCccCCC
Q 040787 161 GFLGFNNATGSPFAINPYPYYAYNSD 186 (436)
Q Consensus 161 ~~l~fL~~~~d~~~vN~yPff~~~~~ 186 (436)
.++..|... .+=-|.+.||.--.++
T Consensus 187 ~vi~~L~~~-g~k~V~L~PlMlVAGd 211 (262)
T PF06180_consen 187 DVIARLKKK-GIKKVHLIPLMLVAGD 211 (262)
T ss_dssp HHHHHHHHH-T-SEEEEEEESSS--H
T ss_pred HHHHHHHhc-CCCeEEEEecccccch
Confidence 444455443 2335889998875554
No 81
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=31.99 E-value=71 Score=25.66 Aligned_cols=46 Identities=11% Similarity=-0.046 Sum_probs=30.8
Q ss_pred CCcEEEEEeecc-ccc-C--------cccHHHHHHHHHHHHHHHHcCCCCCceEEEEe
Q 040787 87 ASNIFLIMVGNE-ISL-D--------ENFRKQLLPAMQNMQNALDAGSLGGKIKVSTV 134 (436)
Q Consensus 87 ~~~I~~I~VGNE-vl~-~--------~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~ 134 (436)
..+|.+-=|+|| ... . ......+.+.|+++-+.+++..- ..|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 468999999999 552 1 12357789999999999998765 4677764
No 82
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=31.86 E-value=76 Score=27.00 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCeEEec--CCC---HHHHHHHHhCCCeEEE
Q 040787 21 DTVKLLQSTSIQKIRLY--SPD---IPMIKALANSGIDIVV 56 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY--~~d---~~vl~A~~~~gi~V~l 56 (436)
.+.+.++++|++.|+++ +.. ..++++|+.+|++|..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566777899988888 433 4789999999998653
No 83
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=30.69 E-value=1.4e+02 Score=29.61 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=59.6
Q ss_pred hCCCeEEEeeCCCC-----chhccCCHHHHHHHHHhhccccCCCCcEEEEEeeccccc-C--cccHHHHHHHHHHHHHHH
Q 040787 49 NSGIDIVVGTQNSE-----IPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISL-D--ENFRKQLLPAMQNMQNAL 120 (436)
Q Consensus 49 ~~gi~V~lgv~n~~-----~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~--~~~~~~l~~am~~v~~aL 120 (436)
..|++|++.|.... ...+..+.+..+. +.++|..+...-.+.+|-+==|... . ......+...|+.+|++|
T Consensus 71 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l 149 (343)
T PF00704_consen 71 NPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKAL 149 (343)
T ss_dssp HTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhh
Confidence 56999988776541 2223333322222 2222222222224677777555543 1 235678888999999999
Q ss_pred HcCCCC-CceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 121 DAGSLG-GKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 121 ~~~gl~-~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
++.+-. ..+.++.+...... .. ..+ -+.-|.+..|++.+-.|-|..
T Consensus 150 ~~~~~~~~~~~ls~a~p~~~~---------~~-----~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 150 KRANRSGKGYILSVAVPPSPD---------YY-----DKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHSTSEEEEEEECSHH---------HH-----TTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred cccccccceeEEeeccccccc---------cc-----ccc--ccccccccccccccccccCCC
Confidence 874110 01345554322111 00 011 123455678999898887776
No 84
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.66 E-value=4.3e+02 Score=24.68 Aligned_cols=100 Identities=8% Similarity=0.129 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCCeEEecCCC---------HHHHHHHHhCCCeEEEe--eCCCCchhccCCHHHHHHHHHhhccccCCC
Q 040787 19 PEDTVKLLQSTSIQKIRLYSPD---------IPMIKALANSGIDIVVG--TQNSEIPALASDPNAAKTWINTNVLPFYPA 87 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRiY~~d---------~~vl~A~~~~gi~V~lg--v~n~~~~~~~~~~~~a~~wv~~~v~~~~~~ 87 (436)
-..+++.|.+.|.++|=+.... ....++++..|+++.+- .+.....+.......+.+|++++
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 169 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL------- 169 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------
Confidence 3445666767777777665432 12455667788876211 11111111111223455565432
Q ss_pred CcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCC--CCceEEEEeeec
Q 040787 88 SNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSL--GGKIKVSTVHSM 137 (436)
Q Consensus 88 ~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl--~~~I~Vst~~~~ 137 (436)
..+++|++.|+.+. ..++ ++|++.|+ .++|.|.+-+..
T Consensus 170 ~~~~ai~~~~d~~a--------~g~~----~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 170 PKPVGIFACTDARA--------RQLL----EACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred CCCcEEEecChHHH--------HHHH----HHHHHhCCCCCCceEEEeeCCc
Confidence 13568888776642 2222 34444555 345776555543
No 85
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=30.29 E-value=2.6e+02 Score=29.27 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCCCcc
Q 040787 104 NFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAY 183 (436)
Q Consensus 104 ~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~ 183 (436)
.....++.+++.+|++.. .+.|++..-.+ +| . | ....+...++|+.+. .+-.+++++|--+
T Consensus 267 ~~~~~~~~~i~~l~~~~~------~i~i~~~~I~G-----~P-g-----E-T~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKCP------DAVLRTTFIVG-----FP-G-----E-TEEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhCC------CCeEeEEEEEE-----CC-C-----C-CHHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 456778888888877531 24455443221 32 1 1 125677788888754 4566788886655
No 86
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=30.19 E-value=1.1e+02 Score=27.25 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEec--C--------CC---HHHHHHHHhCCCeEE
Q 040787 20 EDTVKLLQSTSIQKIRLY--S--------PD---IPMIKALANSGIDIV 55 (436)
Q Consensus 20 ~~v~~~l~~~~~~~VRiY--~--------~d---~~vl~A~~~~gi~V~ 55 (436)
+++.+.++.+|++.|+++ . .. ..+|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445667788999988887 3 33 369999999999975
No 87
>CHL00041 rps11 ribosomal protein S11
Probab=29.61 E-value=1.3e+02 Score=25.85 Aligned_cols=35 Identities=11% Similarity=0.420 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCeEEec--CCC---HHHHHHHHhCCCeEE
Q 040787 21 DTVKLLQSTSIQKIRLY--SPD---IPMIKALANSGIDIV 55 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY--~~d---~~vl~A~~~~gi~V~ 55 (436)
.+.+.++++|++.|+++ ... ..++++|+..||+|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34566777899988888 333 478999999999875
No 88
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=28.80 E-value=96 Score=31.32 Aligned_cols=219 Identities=17% Similarity=0.167 Sum_probs=109.3
Q ss_pred HHHHHHHhCCCeEE--EeeCCCCchh-ccC----C-------HHHHHHHHHhhccccCCC-CcEEEEEeeccccc-Cc--
Q 040787 42 PMIKALANSGIDIV--VGTQNSEIPA-LAS----D-------PNAAKTWINTNVLPFYPA-SNIFLIMVGNEISL-DE-- 103 (436)
Q Consensus 42 ~vl~A~~~~gi~V~--lgv~n~~~~~-~~~----~-------~~~a~~wv~~~v~~~~~~-~~I~~I~VGNEvl~-~~-- 103 (436)
.++.-+...||+|- .=||-...+. +.. + .+..+++|++.+..| .+ .+|...=|=||++. +.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 57777788998874 3345444332 111 1 233455666655555 43 48999999999998 32
Q ss_pred -----cc------HHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCC
Q 040787 104 -----NF------RKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSP 172 (436)
Q Consensus 104 -----~~------~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~ 172 (436)
.. ...+..+.+-.|++..+ ++.-.-+ ++++.. . ....+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~~---------~--k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIESP---------A--KRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTST---------H--HHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccch---------H--HHHHHHHHHHHHHhCCCc
Confidence 11 23566677788887763 4443322 222221 0 013455667777655433
Q ss_pred ceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC
Q 040787 173 FAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDKE 252 (436)
Q Consensus 173 ~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~~ 252 (436)
+ |=-=|| ++.... +. .+.+...|+++.--+++|.|||.-=........
T Consensus 204 I-------------------dgIG~Q---~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 204 I-------------------DGIGLQ---SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp S--------------------EEEEE---EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred c-------------------ceechh---hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 1 110111 111110 11 223333344443345899999985443322111
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEE-EEeecccc-cccCCccccceeeecCCCCeeee
Q 040787 253 PWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTY-LFALYDEN-LKQGPISERSFGLFKPDRTANFD 319 (436)
Q Consensus 253 ~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y-~F~~FdE~-~K~g~~~E~~wGlf~~d~~~ky~ 319 (436)
....+.++.+++.+++.+.+.. |. .++.+ +..+.|.. |.+... -.+=+||+.|.+||-.
T Consensus 252 -~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 252 -AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred -hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 2346778899999999887642 01 23333 44555543 554311 2334688888888753
No 89
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.65 E-value=80 Score=33.52 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 040787 106 RKQLLPAMQNMQNALDAGSLG 126 (436)
Q Consensus 106 ~~~l~~am~~v~~aL~~~gl~ 126 (436)
....+.-++.+.+.|.++||.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 445667777888999999985
No 90
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=28.19 E-value=5.2e+02 Score=26.39 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCCC
Q 040787 106 RKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPY 180 (436)
Q Consensus 106 ~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPf 180 (436)
...+...++.+++.|++..- ..+|+|-.-.. +.... |. . -++...|++..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~-~~~~~--------d~----~-----~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS-WFNGI--------DY----F-----KWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT----SS---------H----H-----HHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc-ccCcC--------CH----H-----HHHhhCCcceeccccC
Confidence 46688888999999988753 46888754322 11100 11 1 1356789999999996
No 91
>PRK05309 30S ribosomal protein S11; Validated
Probab=28.19 E-value=1.3e+02 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.530 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCeEEec--CCC---HHHHHHHHhCCCeEE
Q 040787 21 DTVKLLQSTSIQKIRLY--SPD---IPMIKALANSGIDIV 55 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY--~~d---~~vl~A~~~~gi~V~ 55 (436)
.+.+.++++|++.|+++ +.. ..+|.+|...||+|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34567778999999998 333 478999999999865
No 92
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=28.09 E-value=6.2e+02 Score=25.28 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHH--hCCCeEEEeeCC----CCchhccCCHHHHHHHHHhhccccCCCCcEEEEEeecccccC---------cccHHH
Q 040787 44 IKALA--NSGIDIVVGTQN----SEIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLD---------ENFRKQ 108 (436)
Q Consensus 44 l~A~~--~~gi~V~lgv~n----~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~---------~~~~~~ 108 (436)
+..++ +.++||++.|-. .....++++++..+..+++ +..+...-.+.+|-+==|-... ......
T Consensus 75 ~~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~s-iv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~ 153 (322)
T cd06548 75 LRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADS-AVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKEN 153 (322)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHH-HHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHH
Q ss_pred HHHHHHHHHHHHHcCC--CCCceEEEEeeeccccccCCcccccccchhhhHHHhhh-hhhhhhcCCCceeccCCCCccCC
Q 040787 109 LLPAMQNMQNALDAGS--LGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGF-LGFNNATGSPFAINPYPYYAYNS 185 (436)
Q Consensus 109 l~~am~~v~~aL~~~g--l~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~-l~fL~~~~d~~~vN~yPff~~~~ 185 (436)
++..|+.+|++|.+.| .+.+..+|.+..... ..+... +.-|....|++.+-.|=|...-.
T Consensus 154 ~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~-----------------~~~~~~~~~~l~~~vD~vnlMtYD~~g~w~ 216 (322)
T cd06548 154 FTLLLKELREALDALGAETGRKYLLTIAAPAGP-----------------DKLDKLEVAEIAKYLDFINLMTYDFHGAWS 216 (322)
T ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEEccCCH-----------------HHHhcCCHHHHhhcCCEEEEEEeeccCCCC
Q ss_pred CCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHHcCCCCceEEEe
Q 040787 186 DPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVT 240 (436)
Q Consensus 186 ~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k~g~~~~~i~Vs 240 (436)
.. +|...+--.......-.-.++..+..+.+.|.|.-+|+++
T Consensus 217 ~~-------------~g~~spL~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 258 (322)
T cd06548 217 NT-------------TGHHSNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLG 258 (322)
T ss_pred CC-------------CCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEE
No 93
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.58 E-value=4.3e+02 Score=25.98 Aligned_cols=97 Identities=8% Similarity=0.083 Sum_probs=56.5
Q ss_pred HHHHHhCCCC--------eEEec-CCCHHH---HHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhcc---ccCCC
Q 040787 23 VKLLQSTSIQ--------KIRLY-SPDIPM---IKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVL---PFYPA 87 (436)
Q Consensus 23 ~~~l~~~~~~--------~VRiY-~~d~~v---l~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~---~~~~~ 87 (436)
.++|++.|++ |=++| .+|..| ++++.+.||.+++-|.......- +. ...+++.+.+. ...+.
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~-~~--~~~~~v~~Ql~~~l~~v~~ 158 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEERE-AG--QTSDVLSKQLEAIVKKVSD 158 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHh-CC--CHHHHHHHHHHHHHhcCCH
Confidence 4678887773 33444 455543 45677899999999996432111 11 12234443332 23343
Q ss_pred CcEEEEEeeccccc--C---cccHHHHHHHHHHHHHHHHc
Q 040787 88 SNIFLIMVGNEISL--D---ENFRKQLLPAMQNMQNALDA 122 (436)
Q Consensus 88 ~~I~~I~VGNEvl~--~---~~~~~~l~~am~~v~~aL~~ 122 (436)
....-|+|-=|++. + ..++.++-..++-||+.|.+
T Consensus 159 ~~~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~ 198 (255)
T PTZ00333 159 EAWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAE 198 (255)
T ss_pred HHcceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567788888886 2 23466666677777777753
No 94
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.10 E-value=1.7e+02 Score=27.84 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=39.4
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCeEEecCC---C-HHHHHHHHhCCCeEEE
Q 040787 4 FIGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSP---D-IPMIKALANSGIDIVV 56 (436)
Q Consensus 4 ~~Gvnyg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~---d-~~vl~A~~~~gi~V~l 56 (436)
.+.||+...-..+ +.++.++.+++.|++.|-++.. + ..+.+.++++||+|..
T Consensus 2 ~~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 2 RFAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred ceeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 3578887655444 6788999999999999998642 2 3577888899999753
No 95
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.99 E-value=1.4e+02 Score=28.64 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=37.9
Q ss_pred eEEecCCC-----HHHHHHHHhC--CCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEEEEEeecccc
Q 040787 33 KIRLYSPD-----IPMIKALANS--GIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEIS 100 (436)
Q Consensus 33 ~VRiY~~d-----~~vl~A~~~~--gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl 100 (436)
+++|||+- ..+..+.... |+=++..|-++ .++ +....|++ +|..+-+. .|.-+.|||-.=
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne--~Sf----eni~~W~~-~I~e~a~~-~v~~~LvGNK~D 128 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE--KSF----ENIRNWIK-NIDEHASD-DVVKILVGNKCD 128 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch--HHH----HHHHHHHH-HHHhhCCC-CCcEEEeecccc
Confidence 56778775 2566666544 44444444443 333 34556875 57777654 789999999874
No 96
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.95 E-value=1.8e+02 Score=28.68 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=33.5
Q ss_pred cEEEEEeecccccC---cccHHHHHHHHHHHHHHHHcCCCCCceE-EEEeeeccccccCCcccccccchhhhHHHhhhhh
Q 040787 89 NIFLIMVGNEISLD---ENFRKQLLPAMQNMQNALDAGSLGGKIK-VSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLG 164 (436)
Q Consensus 89 ~I~~I~VGNEvl~~---~~~~~~l~~am~~v~~aL~~~gl~~~I~-Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~ 164 (436)
...-|+||+|+|.+ +..+++| -+.|...|+. ++ ++|. -.+ ...|...|.
T Consensus 3 ~a~iI~vG~ElL~G~ivdtNa~~l-------a~~L~~~G~~--v~~~~~V-gD~-----------------~~~I~~~l~ 55 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDTNAAFL-------ADELTELGVD--LARITTV-GDN-----------------PDRIVEALR 55 (255)
T ss_pred eEEEEEEccceecCceecchHHHH-------HHHHHhcCce--EEEEEec-CCC-----------------HHHHHHHHH
Confidence 35679999999981 1223333 3466777874 43 3332 111 145666677
Q ss_pred hhhhcCCCce
Q 040787 165 FNNATGSPFA 174 (436)
Q Consensus 165 fL~~~~d~~~ 174 (436)
.+.+..|++.
T Consensus 56 ~a~~r~D~vI 65 (255)
T COG1058 56 EASERADVVI 65 (255)
T ss_pred HHHhCCCEEE
Confidence 7766666653
No 97
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.93 E-value=7.4e+02 Score=26.16 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHH---hCCCCeEEecCCC---------------HHHHHHHHh-CCC-eEEEeeCCCCchhccCCHHHHHH
Q 040787 16 LPSPEDTVKLLQ---STSIQKIRLYSPD---------------IPMIKALAN-SGI-DIVVGTQNSEIPALASDPNAAKT 75 (436)
Q Consensus 16 ~ps~~~v~~~l~---~~~~~~VRiY~~d---------------~~vl~A~~~-~gi-~V~lgv~n~~~~~~~~~~~~a~~ 75 (436)
.-++++|++.++ ..|++.|.+++.| .++|.++.. .|+ .+-++.... ..+. .+..+
T Consensus 176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p--~~i~--~ell~- 250 (446)
T PRK14337 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHP--KDIA--PEVIE- 250 (446)
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCc--ccCC--HHHHH-
Confidence 346777776443 4688888887633 135555554 354 243332211 1121 11111
Q ss_pred HHHhhccccCCCCcEEEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCccc
Q 040787 76 WINTNVLPFYPASNIFLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPS 147 (436)
Q Consensus 76 wv~~~v~~~~~~~~I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS 147 (436)
.+... + .....|.+|=|-.. .......+..+++.+|+++. .|.+++..-.+ +| -
T Consensus 251 ----~l~~~-~-~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~------~i~i~~d~IvG-----~P-g 312 (446)
T PRK14337 251 ----AFGEL-P-NLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARP------DIALTTDLIVG-----FP-G 312 (446)
T ss_pred ----HHHhC-C-cccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCC------CCeEEEeEEEE-----CC-C
Confidence 12211 1 12456777655543 23456778888888887642 35566553322 33 1
Q ss_pred ccccchhhhHHHhhhhhhhhhcCCCceeccCCCCc
Q 040787 148 SGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYA 182 (436)
Q Consensus 148 ~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~ 182 (436)
+ ....+...++||.+. .+-.+++++|-.
T Consensus 313 -----E-T~ed~~~tl~~l~~~-~~~~~~~f~ysp 340 (446)
T PRK14337 313 -----E-TEEDFEQTLEAMRTV-GFASSFSFCYSD 340 (446)
T ss_pred -----C-CHHHHHHHHHHHHhc-CCCeeEEEecCC
Confidence 1 115567778887654 456677776543
No 98
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.69 E-value=5.8e+02 Score=24.22 Aligned_cols=86 Identities=14% Similarity=0.313 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhCCCCeEEecCCC---HHHHHHHHh--CCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEEE
Q 040787 18 SPEDTVKLLQSTSIQKIRLYSPD---IPMIKALAN--SGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFL 92 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRiY~~d---~~vl~A~~~--~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~ 92 (436)
+|+|+.+.++ .|.+.|++|-++ +.-++++++ .+++++. ...+ +.+++.+|++. .+.+
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI-----~~~N~~~~l~a---------Ga~~ 179 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV-----NLDNVKDWFAA---------GADA 179 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC-----CHHHHHHHHHC---------CCcE
Confidence 7888877764 689999999655 566777764 2366542 2222 23455667653 4678
Q ss_pred EEeeccccc--CcccHHHHHHHHHHHHHHHH
Q 040787 93 IMVGNEISL--DENFRKQLLPAMQNMQNALD 121 (436)
Q Consensus 93 I~VGNEvl~--~~~~~~~l~~am~~v~~aL~ 121 (436)
+.||...+. .......+-...+++++.++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 899988865 22334566666677666654
No 99
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.51 E-value=5.7e+02 Score=24.05 Aligned_cols=93 Identities=14% Similarity=0.332 Sum_probs=57.3
Q ss_pred CHHHHHHHHHhCCCCeEEec--CCC--HHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCC-CcEEE
Q 040787 18 SPEDTVKLLQSTSIQKIRLY--SPD--IPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPA-SNIFL 92 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRiY--~~d--~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~-~~I~~ 92 (436)
.|.+.++.++..|.+.|=+= +.+ ..+++.+++.|+++-|.+.... .+ + .+.+|.+. +.|..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~----~--------~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV----E--------ELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G----G--------GGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc----h--------HHHHHhhhcCEEEE
Confidence 46777777777777765432 122 3689999999999988886431 11 1 23444443 33333
Q ss_pred EEeeccccc-CcccHHHHHHHHHHHHHHHHcCCCC
Q 040787 93 IMVGNEISL-DENFRKQLLPAMQNMQNALDAGSLG 126 (436)
Q Consensus 93 I~VGNEvl~-~~~~~~~l~~am~~v~~aL~~~gl~ 126 (436)
..| |+=. ++...+..+..|+.+|+.+.+.|++
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCG
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCc
Confidence 333 3323 5667888999999999999998875
No 100
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.31 E-value=5.3e+02 Score=28.68 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=30.5
Q ss_pred CHHHHHH----HHHhCCCCeEEecCCC------HHHHHHHHhCCCeEEEeeCC
Q 040787 18 SPEDTVK----LLQSTSIQKIRLYSPD------IPMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 18 s~~~v~~----~l~~~~~~~VRiY~~d------~~vl~A~~~~gi~V~lgv~n 60 (436)
-|++|++ ..+.+|++.+|+||.- ...++++++.|..+...|.-
T Consensus 93 ~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~y 145 (596)
T PRK14042 93 YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICY 145 (596)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEe
Confidence 3666665 3456899999999863 23567778899988777554
No 101
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=25.31 E-value=2.1e+02 Score=27.36 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHhCCCCeEEecCCCH---------HHHHHH-HhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCC
Q 040787 17 PSPEDTVKLLQSTSIQKIRLYSPDI---------PMIKAL-ANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYP 86 (436)
Q Consensus 17 ps~~~v~~~l~~~~~~~VRiY~~d~---------~vl~A~-~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~ 86 (436)
-+|-++++.+...+++.+-+-|.|. +++..+ +..++.|.+|=... +.+.++.|+..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~------- 94 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDA------- 94 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHT-------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHh-------
Confidence 5788999999999999999998762 344444 46799999997643 34556666653
Q ss_pred CCcEEEEEeecccccCc
Q 040787 87 ASNIFLIMVGNEISLDE 103 (436)
Q Consensus 87 ~~~I~~I~VGNEvl~~~ 103 (436)
.+..+++|.|.+.++
T Consensus 95 --Ga~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 95 --GADRVVIGTEALEDP 109 (229)
T ss_dssp --T-SEEEESHHHHHCC
T ss_pred --CCCEEEeChHHhhch
Confidence 245899999988643
No 102
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.87 E-value=3.5e+02 Score=27.01 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCCCceeccCC
Q 040787 110 LPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYP 179 (436)
Q Consensus 110 ~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vN~yP 179 (436)
-.+.+++++..++.|.-+ +++...... +.|+ ++.+.|+.++..+.+-|+.++.=+
T Consensus 112 ~~a~~E~er~v~~~gf~g-~~l~p~~~~------~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 112 EAAAEELERRVRELGFVG-VKLHPVAQG------FYPD--------DPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred HHHHHHHHHHHHhcCceE-EEecccccC------CCCC--------ChHHHHHHHHHHHcCCCEEEEeCC
Confidence 345667777777777653 555432211 1121 155788889999999999996544
No 103
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.85 E-value=5.9e+02 Score=27.20 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=73.3
Q ss_pred eeEEecCCCCCCC----CHHHHHHHHHh-CCCCeEEecCCCH-----HHHHHHHhC-CCeEEEeeCCCCchhccCCHHHH
Q 040787 5 IGINYGNLGDNLP----SPEDTVKLLQS-TSIQKIRLYSPDI-----PMIKALANS-GIDIVVGTQNSEIPALASDPNAA 73 (436)
Q Consensus 5 ~Gvnyg~~~~n~p----s~~~v~~~l~~-~~~~~VRiY~~d~-----~vl~A~~~~-gi~V~lgv~n~~~~~~~~~~~~a 73 (436)
+|.|-+.||.+++ +-.+.++.|.+ -|+.+||+=..+| +++.|++++ .+-=.+-+|....+ +
T Consensus 196 ~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGs----d---- 267 (437)
T COG0621 196 TGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGS----D---- 267 (437)
T ss_pred EEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCC----H----
Confidence 6788888887775 34444444433 4688999877665 688888864 44434444432110 0
Q ss_pred HHHHHhhccccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcc-cccccc
Q 040787 74 KTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPP-SSGEFQ 152 (436)
Q Consensus 74 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pP-S~g~F~ 152 (436)
. |-+.+. ...+....+..++.+|+++...-++..|-|+ ||= +.
T Consensus 268 -~-ILk~M~-------------------R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------FPgETe---- 311 (437)
T COG0621 268 -R-ILKRMK-------------------RGYTVEEYLEIIEKLRAARPDIAISTDIIVG-----------FPGETE---- 311 (437)
T ss_pred -H-HHHHhC-------------------CCcCHHHHHHHHHHHHHhCCCceEeccEEEE-----------CCCCCH----
Confidence 0 111121 2335677888899999888754444334343 441 12
Q ss_pred hhhhHHHhhhhhhhhhcCCCceeccCCCCcc
Q 040787 153 TWLVDVMKGFLGFNNATGSPFAINPYPYYAY 183 (436)
Q Consensus 153 ~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~ 183 (436)
......++|+. ..-|=.+|+++|=.-
T Consensus 312 ----edFe~tl~lv~-e~~fd~~~~F~YSpR 337 (437)
T COG0621 312 ----EDFEETLDLVE-EVRFDRLHVFKYSPR 337 (437)
T ss_pred ----HHHHHHHHHHH-HhCCCEEeeeecCCC
Confidence 22334455543 455778899985543
No 104
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=23.84 E-value=5.2e+02 Score=24.99 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhCCCCeEEec-CCC--H-HHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCC-CcEEE
Q 040787 18 SPEDTVKLLQSTSIQKIRLY-SPD--I-PMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPA-SNIFL 92 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRiY-~~d--~-~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~-~~I~~ 92 (436)
.|++.++.+...|.+.|=+- .+. + .+|+.++..|+.|-+|+-..... ..+. + .++.+. +.|.-
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T----p~~~----i----~~~l~~vD~VLi 146 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPET----PISL----L----EPYLDQIDLIQI 146 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCC----CHHH----H----HHHHhhcCEEEE
Confidence 47788888877787766553 322 2 67788888999555565543211 1221 1 122221 33444
Q ss_pred EEeeccccc-CcccHHHHHHHHHHHHHHHHcCCCC
Q 040787 93 IMVGNEISL-DENFRKQLLPAMQNMQNALDAGSLG 126 (436)
Q Consensus 93 I~VGNEvl~-~~~~~~~l~~am~~v~~aL~~~gl~ 126 (436)
..| |+=+ ++...+..+..|+++|+.+.+.|+.
T Consensus 147 MtV--~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 147 LTL--DPRTGTKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EEE--CCCCCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 444 3333 5566778999999999999988874
No 105
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.83 E-value=2.5e+02 Score=22.07 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCeEEecCCCHHHHHHHHhCCCeEEEe
Q 040787 19 PEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVG 57 (436)
Q Consensus 19 ~~~v~~~l~~~~~~~VRiY~~d~~vl~A~~~~gi~V~lg 57 (436)
....+++|...+++.|=.-..-+.....|...||+|+.+
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 456788888899999988888899999999999999998
No 106
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=23.51 E-value=6.1e+02 Score=25.60 Aligned_cols=109 Identities=19% Similarity=0.383 Sum_probs=64.3
Q ss_pred HHHHHHHhCCCCeEEecCC-----------C-------HHHHHHHHhCCCeEEEeeCC--C-C-----chh---------
Q 040787 21 DTVKLLQSTSIQKIRLYSP-----------D-------IPMIKALANSGIDIVVGTQN--S-E-----IPA--------- 65 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY~~-----------d-------~~vl~A~~~~gi~V~lgv~n--~-~-----~~~--------- 65 (436)
++++.+|+.|++.|-+|-. | ...|+.+++.||.|+|=... . + ++.
T Consensus 28 ~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~ 107 (319)
T PF01301_consen 28 DRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDIR 107 (319)
T ss_dssp HHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS-
T ss_pred HHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcccccc
Confidence 5677888999999999931 1 25788889999999874321 1 0 110
Q ss_pred cc-CCH---HHHHHHHHh---hccccC--CCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 040787 66 LA-SDP---NAAKTWINT---NVLPFY--PASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLGGKIKVST 133 (436)
Q Consensus 66 ~~-~~~---~~a~~wv~~---~v~~~~--~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst 133 (436)
+. .++ ++.+.|.+. .|.++. .+..|..+=|=||.-. ...-..+|+.++++.++.+....+..++
T Consensus 108 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~----~~~~~~Y~~~l~~~~~~~g~~~~~~~t~ 180 (319)
T PF01301_consen 108 LRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS----YGTDRAYMEALKDAYRDWGIDPVLLYTT 180 (319)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC----TSS-HHHHHHHHHHHHHTT-SSSBEEEE
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC----CcccHhHHHHHHHHHHHhhCccceeecc
Confidence 11 122 355666543 244432 1357999999999853 2234678888999999988764333333
No 107
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=23.50 E-value=1.9e+02 Score=25.21 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhCCCCeEEecCCC-----HHHHHHHHhCCCeEEEeeCC
Q 040787 16 LPSPEDTVKLLQSTSIQKIRLYSPD-----IPMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 16 ~ps~~~v~~~l~~~~~~~VRiY~~d-----~~vl~A~~~~gi~V~lgv~n 60 (436)
..+++++++..++.|++.|=+=|-+ +...+.++..||+|++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 4489999999999999988877654 45667777899999999985
No 108
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=23.26 E-value=57 Score=31.45 Aligned_cols=62 Identities=23% Similarity=0.353 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCC--cccEEEEeecccc
Q 040787 219 QVDAARSALNSLGYNNVEIVVTETGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGK--TTDTYLFALYDEN 296 (436)
Q Consensus 219 ~~da~~~a~~k~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~--~~~~y~F~~FdE~ 296 (436)
+.|.+..+|+++|.|.-=+=.+...|- |+.. + -.|. ..|-|..||. .+.-++|.-+|++
T Consensus 36 ~adila~aL~~~gvp~EVlGFtT~aw~--gg~~---------~------~~w~--~~G~p~~pgrln~l~h~vyk~a~~~ 96 (219)
T PF11775_consen 36 CADILARALERCGVPVEVLGFTTRAWK--GGRS---------R------EAWL--AAGRPRYPGRLNDLRHIVYKDADTP 96 (219)
T ss_pred HHHHHHHHHHhCCCCeEEEeeecCCcC--Ccch---------H------HHHH--hcCCCCCChHHHHHHHHHHHhcCCh
Confidence 578899999999865433445666673 4321 0 1233 3477888886 3345678888999
Q ss_pred ccc
Q 040787 297 LKQ 299 (436)
Q Consensus 297 ~K~ 299 (436)
|+-
T Consensus 97 wrr 99 (219)
T PF11775_consen 97 WRR 99 (219)
T ss_pred hhh
Confidence 874
No 109
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=23.25 E-value=6.5e+02 Score=23.89 Aligned_cols=107 Identities=12% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHhCCCCeEEecCCC-----------HHHHHHHHhCCCeEEEeeCCCC---ch--hccCCHHHHHHHHHhh
Q 040787 17 PSPEDTVKLLQSTSIQKIRLYSPD-----------IPMIKALANSGIDIVVGTQNSE---IP--ALASDPNAAKTWINTN 80 (436)
Q Consensus 17 ps~~~v~~~l~~~~~~~VRiY~~d-----------~~vl~A~~~~gi~V~lgv~n~~---~~--~~~~~~~~a~~wv~~~ 80 (436)
|++ ...+.||..|...|=.|=++ +.=++.+...|++|+. |+... .. ..+.....|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 555 56777888888777667332 2347778889999764 23211 11 1223334555555555
Q ss_pred ccccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCCC
Q 040787 81 VLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLG 126 (436)
Q Consensus 81 v~~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~ 126 (436)
..--.|...+.++.|=.... .......++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~-~~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDAL-DDEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCC-cchhHHHHHHHHHHHHHHHHhcCCc
Confidence 44455766788888844443 2234578999999999999998874
No 110
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.93 E-value=2.8e+02 Score=28.36 Aligned_cols=75 Identities=29% Similarity=0.313 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHH
Q 040787 42 PMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALD 121 (436)
Q Consensus 42 ~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~ 121 (436)
.||+++-++|-.+.+|=.- ...+ .++.|.+|+...+..++ ..|.+|+.-|.-+. . .+ -++|+
T Consensus 176 ~VLkp~idsGkik~~Ge~~--~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgta-----g---Ga----I~aL~ 237 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQW--TDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTA-----G---GA----IAALK 237 (341)
T ss_pred HHHHHHhhCCceEEeeecc--cccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchh-----H---HH----HHHHH
Confidence 6898888887433365332 2233 56788899988888875 45888887766432 1 12 24677
Q ss_pred cCCCCCceEEEEe
Q 040787 122 AGSLGGKIKVSTV 134 (436)
Q Consensus 122 ~~gl~~~I~Vst~ 134 (436)
..||++++|||=-
T Consensus 238 a~Gl~g~vpVsGQ 250 (341)
T COG4213 238 AQGLAGKVPVSGQ 250 (341)
T ss_pred hcccCCCCcccCc
Confidence 8899988997643
No 111
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=22.78 E-value=7.9e+02 Score=24.72 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=72.8
Q ss_pred CHHHH---HHHHHhCCCCeEEecCCC------------HHHHHHHHhC--CCeEEEeeCCCCchhccCCHHHHHHHHHhh
Q 040787 18 SPEDT---VKLLQSTSIQKIRLYSPD------------IPMIKALANS--GIDIVVGTQNSEIPALASDPNAAKTWINTN 80 (436)
Q Consensus 18 s~~~v---~~~l~~~~~~~VRiY~~d------------~~vl~A~~~~--gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~ 80 (436)
.++++ ++.++..|++.|-|-+.| .++++++++. ++.|-+-++.. .. ..+....+.+..
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~--~g---~~e~l~~l~~aG 166 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDF--RG---NIAALDILLDAP 166 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcc--cC---CHHHHHHHHHcC
Confidence 45554 456677899888776432 3577888763 45555544421 11 222222222221
Q ss_pred ccccCCCCcEEEEEeeccccc----CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhh
Q 040787 81 VLPFYPASNIFLIMVGNEISL----DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLV 156 (436)
Q Consensus 81 v~~~~~~~~I~~I~VGNEvl~----~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~ 156 (436)
..-+ ..++. .| +.++ ........+..++.+|+... .++++|..-.+. +.+ .
T Consensus 167 ~dv~--~hnlE--t~--~~l~~~vrr~~t~e~~Le~l~~ak~~~p------gi~~~TgiIVGl-GET-----------e- 221 (302)
T TIGR00510 167 PDVY--NHNLE--TV--ERLTPFVRPGATYRWSLKLLERAKEYLP------NLPTKSGIMVGL-GET-----------N- 221 (302)
T ss_pred chhh--ccccc--ch--HHHHHHhCCCCCHHHHHHHHHHHHHhCC------CCeecceEEEEC-CCC-----------H-
Confidence 2111 11222 11 3343 33456677777777777542 356666554443 322 1
Q ss_pred HHHhhhhhhhhhcCCCceeccCCCCccC
Q 040787 157 DVMKGFLGFNNATGSPFAINPYPYYAYN 184 (436)
Q Consensus 157 ~~i~~~l~fL~~~~d~~~vN~yPff~~~ 184 (436)
..+...+++|.+ ..+-.+++-+|+...
T Consensus 222 ee~~etl~~Lre-lg~d~v~igqYl~p~ 248 (302)
T TIGR00510 222 EEIKQTLKDLRD-HGVTMVTLGQYLRPS 248 (302)
T ss_pred HHHHHHHHHHHh-cCCCEEEeecccCCC
Confidence 456677777764 467778888888864
No 112
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.75 E-value=5.7e+02 Score=24.54 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhCCCCeEEecCCCH--------HHHHHHHh-CCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCC
Q 040787 17 PSPEDTVKLLQSTSIQKIRLYSPDI--------PMIKALAN-SGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPA 87 (436)
Q Consensus 17 ps~~~v~~~l~~~~~~~VRiY~~d~--------~vl~A~~~-~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~ 87 (436)
.+|-++++.+++.|++.+=+.|.|. ++++.+.. .-+.|.+|=-.. +.+.++.|+..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------
Confidence 3788999999999999999998872 56776665 445777764432 23445556542
Q ss_pred CcEEEEEeecccccC
Q 040787 88 SNIFLIMVGNEISLD 102 (436)
Q Consensus 88 ~~I~~I~VGNEvl~~ 102 (436)
.+..|+||.|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 34567899999863
No 113
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=22.70 E-value=1.3e+02 Score=23.21 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=26.9
Q ss_pred HHHHHHHhhccccCCCCcEEEEEeeccccc-C---cccHHHHHHHHHHHHHHHHc
Q 040787 72 AAKTWINTNVLPFYPASNIFLIMVGNEISL-D---ENFRKQLLPAMQNMQNALDA 122 (436)
Q Consensus 72 ~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~---~~~~~~l~~am~~v~~aL~~ 122 (436)
.-..|+++||.- |+|.++ + ....+.|+|+++..++.++.
T Consensus 12 iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 12 ILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 346799988743 445555 2 23467899999999888864
No 114
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.64 E-value=5.8e+02 Score=24.47 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHh-CCCCeEEecCCCH---------HHHHHHH-hCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccC
Q 040787 17 PSPEDTVKLLQS-TSIQKIRLYSPDI---------PMIKALA-NSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFY 85 (436)
Q Consensus 17 ps~~~v~~~l~~-~~~~~VRiY~~d~---------~vl~A~~-~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~ 85 (436)
.+|.++++.+.+ .|++.+=+.|.|. ++++.++ ..+++|.+|=-... .+.++.++.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs-------~e~v~~~l~------- 96 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRT-------KSQIMDYFA------- 96 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCC-------HHHHHHHHH-------
Confidence 478888888887 6899999998872 4666654 57899999865432 334445543
Q ss_pred CCCcEEEEEeeccccc
Q 040787 86 PASNIFLIMVGNEISL 101 (436)
Q Consensus 86 ~~~~I~~I~VGNEvl~ 101 (436)
.-+..++||.|.+.
T Consensus 97 --~Ga~kvvigt~a~~ 110 (234)
T PRK13587 97 --AGINYCIVGTKGIQ 110 (234)
T ss_pred --CCCCEEEECchHhc
Confidence 13456789999985
No 115
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=22.32 E-value=5.8e+02 Score=22.97 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhC--CCCeEEecCCCH-------HHHHHHHhCCCeEEEe
Q 040787 16 LPSPEDTVKLLQST--SIQKIRLYSPDI-------PMIKALANSGIDIVVG 57 (436)
Q Consensus 16 ~ps~~~v~~~l~~~--~~~~VRiY~~d~-------~vl~A~~~~gi~V~lg 57 (436)
..++++++++++.. .+..|.+.+-+| .+++.+++.|+++.+-
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~ 96 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLD 96 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEE
Confidence 46788999988763 368899887654 4577777888876553
No 116
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.23 E-value=4.8e+02 Score=26.28 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 040787 107 KQLLPAMQNMQNA 119 (436)
Q Consensus 107 ~~l~~am~~v~~a 119 (436)
+..+.+|+.++++
T Consensus 214 ~~~~~ai~~L~~~ 226 (321)
T TIGR03822 214 AEARAACARLIDA 226 (321)
T ss_pred HHHHHHHHHHHHc
Confidence 4566666666663
No 117
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.08 E-value=9.9e+02 Score=25.58 Aligned_cols=92 Identities=11% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCHHHHHHHHH----hCCCCeEEecCCC----H----HHHHHHHhCC-CeEEEeeCCCCchhccCCHHHHHHHHHhhccc
Q 040787 17 PSPEDTVKLLQ----STSIQKIRLYSPD----I----PMIKALANSG-IDIVVGTQNSEIPALASDPNAAKTWINTNVLP 83 (436)
Q Consensus 17 ps~~~v~~~l~----~~~~~~VRiY~~d----~----~vl~A~~~~g-i~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~ 83 (436)
-++++|++.|+ ..|++.+-+.|-+ . ++++++.+.| +.+..++... ...+..+.+....+-
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r-~~~i~~d~ell~~l~------ 294 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR-VTDIVRDADILHLYR------ 294 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc-cccccCCHHHHHHHH------
Confidence 47788876554 4688888877654 2 5677777776 6665554431 111212322222211
Q ss_pred cCCCCcEEEEEeeccccc--------CcccHHHHHHHHHHHHH
Q 040787 84 FYPASNIFLIMVGNEISL--------DENFRKQLLPAMQNMQN 118 (436)
Q Consensus 84 ~~~~~~I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~ 118 (436)
...+..|.+|=|... ...+..++..+++.+|+
T Consensus 295 ---~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~ 334 (497)
T TIGR02026 295 ---RAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQ 334 (497)
T ss_pred ---HhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 135678888888765 23445666666666655
No 118
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=22.03 E-value=1.2e+02 Score=31.14 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHhCCCCeEEecCCCH------HHHHHHHhCCCeEEEeeCC
Q 040787 16 LPSPEDTVKLLQSTSIQKIRLYSPDI------PMIKALANSGIDIVVGTQN 60 (436)
Q Consensus 16 ~ps~~~v~~~l~~~~~~~VRiY~~d~------~vl~A~~~~gi~V~lgv~n 60 (436)
.|+++++.++++... ..||+|...| .+++.+++.||.|.+|=.+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367778888887643 6788885543 6788888999999888654
No 119
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.27 E-value=9.6e+02 Score=25.15 Aligned_cols=188 Identities=14% Similarity=0.147 Sum_probs=89.1
Q ss_pred CCCHHHHHHHH---HhCCCCeEEecCCC-------------HHHHHHHHhC-CC-eEEEeeCCCCchhccCCHHHHHHHH
Q 040787 16 LPSPEDTVKLL---QSTSIQKIRLYSPD-------------IPMIKALANS-GI-DIVVGTQNSEIPALASDPNAAKTWI 77 (436)
Q Consensus 16 ~ps~~~v~~~l---~~~~~~~VRiY~~d-------------~~vl~A~~~~-gi-~V~lgv~n~~~~~~~~~~~~a~~wv 77 (436)
.-++++|++.+ ...|++.|.+.+.+ ..+|+++.+. |+ .+-++..... .+ +.+..
T Consensus 174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~--~l--~~ell---- 245 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPR--DL--DEDII---- 245 (437)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcc--cC--CHHHH----
Confidence 34678887543 34688888886533 2466666543 44 2333322111 11 12211
Q ss_pred HhhccccCCCCcEEEEEeeccccc--------CcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCccccc
Q 040787 78 NTNVLPFYPASNIFLIMVGNEISL--------DENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSG 149 (436)
Q Consensus 78 ~~~v~~~~~~~~I~~I~VGNEvl~--------~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g 149 (436)
+.+... + .....|.+|=|-.. ...+......+++.+|+++. .|.|++..-.+ +| |
T Consensus 246 -~~~~~~-~-~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~------gi~i~~d~IvG-----~P---g 308 (437)
T PRK14331 246 -KAMADI-P-QVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIP------DITFSTDIIVG-----FP---T 308 (437)
T ss_pred -HHHHcC-C-ccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCC------CCEEecCEEEE-----CC---C
Confidence 122211 1 12455555555332 33457788888888887642 24455433222 33 1
Q ss_pred ccchhhhHHHhhhhhhhhhcCCCceeccCCCCccCCCCCCccccccccccCCceecCCCccccchHHHHHHHHHHHHHHH
Q 040787 150 EFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRVDPNNNIKYMNMFDAQVDAARSALNS 229 (436)
Q Consensus 150 ~F~~~~~~~i~~~l~fL~~~~d~~~vN~yPff~~~~~p~~~~l~~A~f~~~~~~~d~~~~~~y~n~~da~~da~~~a~~k 229 (436)
| .+..+...++|+.+. .+-.+++|+|--.-+.| -|.+. + .+.+.....+...|.+-+-.......++
T Consensus 309 ---E-T~ed~~~tl~~l~~l-~~~~i~~f~~sp~pGT~-----~~~~~--~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 375 (437)
T PRK14331 309 ---E-TEEDFEETLDVLKKV-EFEQVFSFKYSPRPGTP-----AAYME--G-QEPDEVKTKRMNRLLELQKEITFKKALS 375 (437)
T ss_pred ---C-CHHHHHHHHHHHHhc-CcceeeeeEecCCCCcc-----hhhCC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 114566777887654 34457777753332222 01111 0 1111111234455555555544444444
Q ss_pred c-CCCCceEEEeee
Q 040787 230 L-GYNNVEIVVTET 242 (436)
Q Consensus 230 ~-g~~~~~i~VsEt 242 (436)
+ | ..++|+|-|.
T Consensus 376 ~~g-~~~~vlve~~ 388 (437)
T PRK14331 376 YEG-TVQEVLVEEE 388 (437)
T ss_pred hCC-CEEEEEEEEe
Confidence 3 4 4578888653
No 120
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.03 E-value=6.1e+02 Score=24.18 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhCCCCeEEecCCCH--------HHHHHHH-hCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCC
Q 040787 18 SPEDTVKLLQSTSIQKIRLYSPDI--------PMIKALA-NSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPAS 88 (436)
Q Consensus 18 s~~~v~~~l~~~~~~~VRiY~~d~--------~vl~A~~-~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~ 88 (436)
.|.++++.+++.|++.+=+.|.|. .+++.+. ..++.|.+|--... .+.++.++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-------~edv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-------LENAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-------HHHHHHHHHc---------
Confidence 688999999999999999998872 4565554 56899999876432 2333444431
Q ss_pred cEEEEEeeccccc
Q 040787 89 NIFLIMVGNEISL 101 (436)
Q Consensus 89 ~I~~I~VGNEvl~ 101 (436)
-...+++|.|.+.
T Consensus 100 Ga~~viigt~~~~ 112 (233)
T cd04723 100 GASRVIVGTETLP 112 (233)
T ss_pred CCCeEEEcceecc
Confidence 2456789999975
No 121
>PLN03059 beta-galactosidase; Provisional
Probab=21.00 E-value=4.9e+02 Score=30.20 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=70.7
Q ss_pred HHHHHHHhCCCCeEEecCC------C------------HHHHHHHHhCCCeEEEee---------------CCCCch--h
Q 040787 21 DTVKLLQSTSIQKIRLYSP------D------------IPMIKALANSGIDIVVGT---------------QNSEIP--A 65 (436)
Q Consensus 21 ~v~~~l~~~~~~~VRiY~~------d------------~~vl~A~~~~gi~V~lgv---------------~n~~~~--~ 65 (436)
+.++.+|..|++.|-+|=. . ..-++.+++.||.|+|=. |.-..+ .
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 3456678899999999821 1 246788889999999843 211111 1
Q ss_pred cc-CCH---HHHHHHHHhhcc-----cc--CCCCcEEEEEeeccccc-CcccHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 040787 66 LA-SDP---NAAKTWINTNVL-----PF--YPASNIFLIMVGNEISL-DENFRKQLLPAMQNMQNALDAGSLGGKIKVST 133 (436)
Q Consensus 66 ~~-~~~---~~a~~wv~~~v~-----~~--~~~~~I~~I~VGNEvl~-~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst 133 (436)
++ .++ ++.++|+...+. +. -.+..|..+=|=||-=. ....-..-..+|+.+++.+++.|++ ||.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceEE
Confidence 22 222 355666554322 11 12467999999999643 1111122367999999999999984 77766
Q ss_pred eee
Q 040787 134 VHS 136 (436)
Q Consensus 134 ~~~ 136 (436)
.+.
T Consensus 221 ~dg 223 (840)
T PLN03059 221 CKQ 223 (840)
T ss_pred CCC
Confidence 654
No 122
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=20.73 E-value=8.6e+02 Score=25.62 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=58.2
Q ss_pred HHHHHH---HHhCCCCeEEecCC-----CHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhccccCCCCcEE
Q 040787 20 EDTVKL---LQSTSIQKIRLYSP-----DIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIF 91 (436)
Q Consensus 20 ~~v~~~---l~~~~~~~VRiY~~-----d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~ 91 (436)
..+.++ |...++ .+|+-.. +.++|+++++.++...+.++.+.. +.. +-+.+.+
T Consensus 216 ~~~~~Ll~~l~~~~~-~~r~~~~~p~~~~dell~~m~~g~~~~~l~IglESg-----s~~-----vLk~m~r-------- 276 (440)
T PRK14862 216 TRMTDLCEALGELGA-WVRLHYVYPYPHVDEVIPLMAEGKILPYLDIPFQHA-----SPR-----VLKRMKR-------- 276 (440)
T ss_pred hHHHHHHHHHHhcCC-EEEEecCCCCcCCHHHHHHHhcCCCccccccccccC-----CHH-----HHHhcCC--------
Confidence 444444 444566 6786432 257899998833433555554322 111 1111211
Q ss_pred EEEeecccccCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEeeeccccccCCcccccccchhhhHHHhhhhhhhhhcCC
Q 040787 92 LIMVGNEISLDENFRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGS 171 (436)
Q Consensus 92 ~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl~~~I~Vst~~~~~~l~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d 171 (436)
.......+.+++.+|+.... |.|+|..-. .|| . | ....+...++|+.+. .
T Consensus 277 -----------~~~~~~~~~~i~~lr~~~~~------i~i~t~~Iv-----GfP-g-----E-T~edf~~tl~fi~e~-~ 326 (440)
T PRK14862 277 -----------PASVEKTLERIKKWREICPD------LTIRSTFIV-----GFP-G-----E-TEEDFQMLLDFLKEA-Q 326 (440)
T ss_pred -----------CCCHHHHHHHHHHHHHHCCC------ceecccEEE-----ECC-C-----C-CHHHHHHHHHHHHHc-C
Confidence 22345677888888886542 445442211 133 1 1 125667788887753 3
Q ss_pred CceeccCCCCcc
Q 040787 172 PFAINPYPYYAY 183 (436)
Q Consensus 172 ~~~vN~yPff~~ 183 (436)
+-.+++++|--.
T Consensus 327 ~d~~~~f~ysP~ 338 (440)
T PRK14862 327 LDRVGCFKYSPV 338 (440)
T ss_pred CCeeeeEeecCC
Confidence 344555554443
No 123
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.57 E-value=4.6e+02 Score=24.42 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=25.4
Q ss_pred cCCCCceEEEee-ecCCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 040787 230 LGYNNVEIVVTE-TGWPSKGDDKEPWATIDKAKDYYSGLITHLRS 273 (436)
Q Consensus 230 ~g~~~~~i~VsE-tGWPs~G~~~~~~as~~na~~y~~~lv~~~~~ 273 (436)
.++|++||++.| .++|..--........+..+...+..++.+.+
T Consensus 89 ~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 89 EAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp TT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999 45555422223456777778888888888754
No 124
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=20.31 E-value=2e+02 Score=27.80 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=27.8
Q ss_pred HHHHHHhCCCCeEEec--CC--CHHHHHHHHhCCCeEEEee
Q 040787 22 TVKLLQSTSIQKIRLY--SP--DIPMIKALANSGIDIVVGT 58 (436)
Q Consensus 22 v~~~l~~~~~~~VRiY--~~--d~~vl~A~~~~gi~V~lgv 58 (436)
+++..+++|+..|.|+ .. -..+|+++...||+|..=.
T Consensus 172 aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~I~ 212 (233)
T PTZ00090 172 IAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQII 212 (233)
T ss_pred HHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEEEE
Confidence 3455667899999988 22 3579999999999987533
No 125
>PRK12359 flavodoxin FldB; Provisional
Probab=20.23 E-value=6.8e+02 Score=22.95 Aligned_cols=110 Identities=12% Similarity=0.154 Sum_probs=61.3
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHh-CCCCeEEecCCCHHHHHHHHhCCCeEEEeeCCCCchhccCCHHHHHHHHHhhcc
Q 040787 4 FIGINYGNLGDNLPSPEDTVKLLQS-TSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVL 82 (436)
Q Consensus 4 ~~Gvnyg~~~~n~ps~~~v~~~l~~-~~~~~VRiY~~d~~vl~A~~~~gi~V~lgv~n~~~~~~~~~~~~a~~wv~~~v~ 82 (436)
.++|=|+....|- +.|++.|++ .+...+.+.+....-...+.+.. .|++|.|......+. ......+.. +.
T Consensus 2 ki~I~Y~S~TGNT---e~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~yD-~iIlG~pTw~~Gel~---~d~~~~~~~-l~ 73 (172)
T PRK12359 2 KIGLFYGSSTCYT---EMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYD-VLILGIPTWDFGEIQ---EDWEAVWDQ-LD 73 (172)
T ss_pred eEEEEEECCCCHH---HHHHHHHHHHhCCCeEEEEEcccCChhHHccCC-EEEEEecccCCCcCc---HHHHHHHHH-Hh
Confidence 3788898766554 456665544 45556777776543333344333 588999874333332 111222212 22
Q ss_pred c-cCCCCcEEEEEeecccccCcccHHHHHHHHHHHHHHHHcCCC
Q 040787 83 P-FYPASNIFLIMVGNEISLDENFRKQLLPAMQNMQNALDAGSL 125 (436)
Q Consensus 83 ~-~~~~~~I~~I~VGNEvl~~~~~~~~l~~am~~v~~aL~~~gl 125 (436)
. .+.+.+|..+-.|+.. .....-..+|+.+++.|++.|-
T Consensus 74 ~~dl~gK~vAlFG~Gd~~----~y~~~f~~a~~~l~~~l~~~Ga 113 (172)
T PRK12359 74 DLNLEGKIVALYGMGDQL----GYGEWFLDALGMLHDKLAPKGV 113 (172)
T ss_pred hCCCCCCEEEEEeCCCCc----cchHHHHHHHHHHHHHHHhCCC
Confidence 2 2333444444444322 2456788999999999988764
Done!