Query 040788
Match_columns 365
No_of_seqs 277 out of 1974
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:49:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 4.1E-55 8.9E-60 414.4 23.2 299 18-327 89-396 (436)
2 KOG2223 Uncharacterized conser 100.0 1.8E-43 3.9E-48 325.0 19.4 257 66-330 284-558 (586)
3 KOG2222 Uncharacterized conser 100.0 3.9E-43 8.5E-48 325.9 19.5 326 16-344 86-437 (848)
4 smart00164 TBC Domain in Tre-2 100.0 4.7E-42 1E-46 303.2 18.1 192 82-277 1-198 (199)
5 COG5210 GTPase-activating prot 100.0 1.2E-40 2.6E-45 331.5 23.0 245 52-302 182-433 (496)
6 KOG4347 GTPase-activating prot 100.0 2.2E-38 4.7E-43 305.5 22.0 307 19-344 148-476 (671)
7 KOG4567 GTPase-activating prot 100.0 1.9E-37 4.1E-42 275.4 18.0 247 76-329 26-361 (370)
8 KOG1092 Ypt/Rab-specific GTPas 100.0 1.7E-38 3.8E-43 292.1 11.5 248 75-329 178-474 (484)
9 PF00566 RabGAP-TBC: Rab-GTPas 100.0 1.5E-36 3.2E-41 270.7 16.6 202 88-296 1-214 (214)
10 KOG4436 Predicted GTPase activ 100.0 6.9E-36 1.5E-40 292.4 20.7 291 54-352 550-850 (948)
11 KOG1102 Rab6 GTPase activator 100.0 6.8E-35 1.5E-39 280.2 17.3 270 49-326 113-383 (397)
12 KOG2221 PDZ-domain interacting 100.0 1.9E-35 4.2E-40 250.1 8.6 220 20-252 47-267 (267)
13 KOG1093 Predicted protein kina 100.0 1.5E-32 3.2E-37 261.1 15.9 242 75-327 345-589 (725)
14 KOG2224 Uncharacterized conser 99.9 1.1E-26 2.3E-31 214.4 14.6 250 77-327 426-728 (781)
15 KOG1091 Ypt/Rab-specific GTPas 99.9 3.8E-25 8.2E-30 210.7 13.2 201 125-328 106-362 (625)
16 KOG2595 Predicted GTPase activ 99.9 1.4E-24 3E-29 195.5 13.0 231 87-326 63-298 (395)
17 KOG4436 Predicted GTPase activ 99.9 5.6E-23 1.2E-27 202.2 13.9 329 15-347 103-460 (948)
18 KOG2197 Ypt/Rab-specific GTPas 99.9 6.5E-22 1.4E-26 193.9 10.2 235 84-324 176-437 (488)
19 KOG3636 Uncharacterized conser 99.7 4.8E-17 1E-21 151.5 12.8 242 85-344 36-286 (669)
20 KOG2801 Probable Rab-GAPs [Int 99.6 8.6E-14 1.9E-18 124.0 16.7 247 76-330 33-295 (559)
21 PF14961 BROMI: Broad-minded p 97.7 0.0011 2.5E-08 70.4 16.0 126 216-350 1164-1290(1296)
22 KOG1648 Uncharacterized conser 97.6 2.6E-06 5.7E-11 81.4 -5.3 230 77-323 550-797 (813)
23 KOG1102 Rab6 GTPase activator 89.2 0.047 1E-06 53.2 -2.6 135 127-297 3-137 (397)
24 KOG2224 Uncharacterized conser 71.7 1.4 2.9E-05 42.5 0.2 34 166-199 566-600 (781)
25 PF10815 ComZ: ComZ; InterPro 68.6 5.8 0.00013 26.5 2.6 40 222-261 6-45 (56)
26 KOG2197 Ypt/Rab-specific GTPas 56.5 5.2 0.00011 40.1 1.1 45 53-102 50-94 (488)
27 PF09597 IGR: IGR protein moti 30.8 25 0.00054 24.1 0.9 20 75-97 31-50 (57)
28 PF08109 Antimicrobial14: Lact 23.9 60 0.0013 18.3 1.4 12 166-177 3-14 (31)
29 TIGR02433 lysidine_TilS_C tRNA 21.9 35 0.00075 21.8 0.3 24 74-97 19-43 (47)
30 COG1938 Archaeal enzymes of AT 21.8 1.2E+02 0.0027 27.4 3.8 42 303-346 192-233 (244)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-55 Score=414.45 Aligned_cols=299 Identities=35% Similarity=0.605 Sum_probs=252.9
Q ss_pred CCCCcCCCccCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHhhccCCCcch--hcccChHHHHHHHhcCCCcchHHHHH
Q 040788 18 RPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKH--YVRRKPHVVKRRIRKGIPDCLRGLVW 95 (365)
Q Consensus 18 ~~~d~yGf~~~~~~~~~~~~~~~~~~~~~~~e~~r~~kW~~~l~~~~~~~~~--~~~~~~~klk~~~~~GIP~~~R~~vW 95 (365)
..+|.|||.......+...+.+..+.. ...+.+|..+|..++..+ ..|.. ......+++|+++|+|||+++|+.||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~k~~s~~-~~~~~r~~~~~~l~~~~~-~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW 166 (436)
T KOG2058|consen 89 NGFDQYSLQKLIGLPPSDGYLKWLSSY-LAYEERRQLRWELELQSN-IKLHSPNDFPPRSDELKRLIRKGIPPELRGEVW 166 (436)
T ss_pred CcccccchhhcccCCcchhhhHHHHHh-hhhhhhHHHHHHHHhhhh-hcccccccccCCcHHHHHHHHcCCChhhhhHHH
Confidence 457999997755444322233333222 234667888999998765 44433 11134688999999999999999999
Q ss_pred HHHhCCHhHhhcC-cchHHHHhhhccC---CChhHHhhhhhhcCCCc-cccccCCCcchHHHHHHHHHHHHhcCCCCccc
Q 040788 96 QLISGSRDLLLMN-PGVYEQLLIYETS---TSELDIIRDISRTFPSH-VFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQ 170 (365)
Q Consensus 96 ~~ll~~~~~~~~~-~~~y~~l~~~~~~---~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~Q 170 (365)
..++|.. ...+ ++.|+.++..... +...+|+.|+.||||++ +.|..+++.+...|+|||.|||.+||.|||||
T Consensus 167 ~~~~g~~--~~~~~~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQ 244 (436)
T KOG2058|consen 167 WVLSGAR--RQLNYPGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQ 244 (436)
T ss_pred HHHhcch--hhccCchhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchh
Confidence 9999933 2334 8999999876544 35678999999999999 79988877789999999999999999999999
Q ss_pred chhHHHHHHHHhcC-hhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchH
Q 040788 171 GMGFLAGLLLLYMS-EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYAS 249 (365)
Q Consensus 171 Gm~~ia~~ll~~~~-E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~ 249 (365)
|||++||++|++|+ |++|||+|+.+++++ +++||.+++.|.+.+..+|+.+++..+|+|+.||...+++..+++.
T Consensus 245 GmNflAallLL~~~~EE~AFW~Lv~iie~~----lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~ 320 (436)
T KOG2058|consen 245 GMNFLAALLLLLMPSEEDAFWMLVALIENY----LPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETL 320 (436)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHh----chhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeeh
Confidence 99999999999998 999999999999995 6779999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC-CHHHHHHHHhCCCCCCCChhHHHHHHhcC
Q 040788 250 QWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-PFEKLIHALRNFPEDAMDPDKLLPVAYSI 327 (365)
Q Consensus 250 ~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~-~~~~i~~~l~~~~~~~~d~~~li~~a~~l 327 (365)
+||+|+|++.+|.++++||||++|++|.+++|++|+|+++.++++|+++ +..+++.++..+.....+.+ +.|+..
T Consensus 321 ~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~~~~~---~~~f~~ 396 (436)
T KOG2058|consen 321 PWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRSIDPD---QDAFGL 396 (436)
T ss_pred hhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHhhhhh---hhhhhc
Confidence 9999999999999999999999999999999999999999999999995 67789999988877666666 555543
No 2
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.8e-43 Score=324.98 Aligned_cols=257 Identities=35% Similarity=0.614 Sum_probs=224.4
Q ss_pred CcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhh------------cc------CCChhHH
Q 040788 66 DWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY------------ET------STSELDI 127 (365)
Q Consensus 66 ~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~------------~~------~~~~~~I 127 (365)
+|+.- ..+..++.++|.|||+.+||+||....|+. .....+.|..++.+ .. ..+..+|
T Consensus 284 nWe~m--~~SrR~relWwQGiP~~VRGkvW~laIGNe--l~it~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i 359 (586)
T KOG2223|consen 284 NWEDM--LKSRRVRELWWQGIPPSVRGKVWSLAIGNE--LNITYELFDIALARAKEREAKSLAEQMSNSAADREASVELI 359 (586)
T ss_pred chHHH--HhhHHHHHHHHccCChhhcchhhHhhhCcc--cccCHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhhe
Confidence 66542 356789999999999999999999999975 22334455443321 11 1123469
Q ss_pred hhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccc
Q 040788 128 IRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGL 207 (365)
Q Consensus 128 ~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~ 207 (365)
..|+.||||+..+|+. +|+..+.|..||.||+.|.|++||+|||++|||+|++.|++.+||.+|.+|+++.+ ...+
T Consensus 360 ~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~---q~Af 435 (586)
T KOG2223|consen 360 KLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPC---QQAF 435 (586)
T ss_pred eechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHH---HHHH
Confidence 9999999999999998 67999999999999999999999999999999999999999999999999999954 4678
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHH
Q 040788 208 YQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL 287 (365)
Q Consensus 208 ~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lai 287 (365)
|..+.+.+..++..|+..+++..|+|+.||.++++.|++|++.|+.+||+..+|++.+.||||+|+.+|..|+|+.+++|
T Consensus 436 f~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgI 515 (586)
T KOG2223|consen 436 FRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGI 515 (586)
T ss_pred HhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhhCCCHHHHHHHHhCCCCCCCChhHHHHHHhcCccc
Q 040788 288 LTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVS 330 (365)
Q Consensus 288 l~~~~~~Ll~~~~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~ 330 (365)
|+++++.|+.+|+..+.++|..+|......+.+...|+-+..+
T Consensus 516 lklyepkLl~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~s 558 (586)
T KOG2223|consen 516 LKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQS 558 (586)
T ss_pred HHHccchHhhhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998865556666666655443
No 3
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.9e-43 Score=325.87 Aligned_cols=326 Identities=26% Similarity=0.448 Sum_probs=269.9
Q ss_pred CCCCCCcCCCccCCCCCCchhhh-h-hhchHH---H-HHHHHHHHHHHHHhhcc------CCCcchhcc--cChHHHHHH
Q 040788 16 SPRPVDRFGFVKQEHGSPHEGVI-K-SRSAIQ---F-EREERRVRKWRKMIGVG------GSDWKHYVR--RKPHVVKRR 81 (365)
Q Consensus 16 ~~~~~d~yGf~~~~~~~~~~~~~-~-~~~~~~---~-~~e~~r~~kW~~~l~~~------~~~~~~~~~--~~~~klk~~ 81 (365)
+..-.|+|||-+.++.-+|..-. . +.+++. . ....+..-||...+... ..-|+++.. .+.++++.+
T Consensus 86 p~~~fdefgfr~edddhdpnlg~eeetss~k~ls~pfledaq~klk~ia~le~~hke~~~dl~w~hi~~~~~ktdk~~~l 165 (848)
T KOG2222|consen 86 PEEFFDEFGFRKEDDDHDPNLGDEEETSSAKHLSEPFLEDAQHKLKLIAHLEDSHKEEAADLLWEHIDGMELKTDKFEEL 165 (848)
T ss_pred hHHHHHhhCcccccccCCCCCCchhccchhhhccCcchhhhHHHHHHHHHHHHhhHHHHhhhhHHhhcccccchHHHHHH
Confidence 34457999998866553331100 0 111111 0 11223334787776432 224776543 456899999
Q ss_pred Hhc-CCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhc---cCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHH
Q 040788 82 IRK-GIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYE---TSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLK 157 (365)
Q Consensus 82 ~~~-GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~---~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ 157 (365)
++. |||+.+|+.+|+.|+|+-.........|+.++... ......||++|+-|+.|++.+|...++.|.+.|+|||+
T Consensus 166 lkeggiphslr~~lw~rlsga~~kkk~ae~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk 245 (848)
T KOG2222|consen 166 LKEGGIPHSLRAFLWMRLSGALAKKKDAETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILK 245 (848)
T ss_pred HHcCCCCcchhHHHHHHhhhhhhhhccccccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHh
Confidence 986 59999999999999998766666677899887643 34456899999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhh
Q 040788 158 AYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHF 237 (365)
Q Consensus 158 a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl 237 (365)
+.|...|++||||||..|+|.||+|+.|+.|||++.++++++++ .+||+..+-|++..-.+...|+.-+.|.+-+.|
T Consensus 246 ~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp---~nfysqtllgiqaderv~~~li~~~l~~ldeal 322 (848)
T KOG2222|consen 246 CIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILP---ANFYSQTLLGIQADERVMHHLIACHLPDLDEAL 322 (848)
T ss_pred hheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcC---chhhhhhHhccchhHHHHHHHHHhccCchhHHH
Confidence 99999999999999999999999999999999999999999876 568899999999999999999999999999999
Q ss_pred hhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC-----CHHHHHHHHhCCCC
Q 040788 238 TKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-----PFEKLIHALRNFPE 312 (365)
Q Consensus 238 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~-----~~~~i~~~l~~~~~ 312 (365)
++..+..++.+..||+|+|+..+.....+||||.||++|.-.+|++.++||++.+.+|... +..+|+..|.++|.
T Consensus 323 ~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~ 402 (848)
T KOG2222|consen 323 EDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPA 402 (848)
T ss_pred HhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999988763 56789999999999
Q ss_pred CCCChhHHHHHHhcCcc--ch-HHHHHHHHHHHHh
Q 040788 313 DAMDPDKLLPVAYSIKV--SK-RLEELKSLYEKQN 344 (365)
Q Consensus 313 ~~~d~~~li~~a~~l~~--~~-~l~~l~~~~~~~~ 344 (365)
...|++.++..|..+.. +. -|.+.+++...-.
T Consensus 403 ~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~l 437 (848)
T KOG2222|consen 403 EVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVL 437 (848)
T ss_pred hhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhh
Confidence 98999999999977655 43 3688887765533
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=4.7e-42 Score=303.22 Aligned_cols=192 Identities=45% Similarity=0.816 Sum_probs=173.2
Q ss_pred HhcCCCcchHHHHHHHHhCCHhHhhc-CcchHHHHhhhccCCC---hhHHhhhhhhcCCCccccccCCCcchHHHHHHHH
Q 040788 82 IRKGIPDCLRGLVWQLISGSRDLLLM-NPGVYEQLLIYETSTS---ELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLK 157 (365)
Q Consensus 82 ~~~GIP~~~R~~vW~~ll~~~~~~~~-~~~~y~~l~~~~~~~~---~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ 157 (365)
+++|||+++|+.||+.++|+...... .++.|+.+........ ..+|++||.||+|+++.|+.+.+.+++.|.|||.
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ 80 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHH
Confidence 36899999999999999998754432 3788999887644332 4789999999999999999766679999999999
Q ss_pred HHHHhcCCCCcccchhHHHHHHHHhc-ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhh
Q 040788 158 AYSVYDRDVGYVQGMGFLAGLLLLYM-SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEH 236 (365)
Q Consensus 158 a~~~~~p~igY~QGm~~ia~~ll~~~-~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~h 236 (365)
+|+.++|++||||||++|||+|+.++ +|++|||+|+++|+... ..+|.++.+++...+..++.+++..+|+|++|
T Consensus 81 ~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~ 156 (199)
T smart00164 81 AYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG----PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKH 156 (199)
T ss_pred HHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC----cccCCCChHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 99999999999999999999999999 59999999999999842 45688899999999999999999999999999
Q ss_pred hhh-ccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcCh
Q 040788 237 FTK-EMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGV 277 (365)
Q Consensus 237 l~~-~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~ 277 (365)
|.+ .|+++.+|+.+|++|+|++++|++.++||||.|+++|.
T Consensus 157 l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 157 LKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 996 99999999999999999999999999999999999995
No 5
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=331.48 Aligned_cols=245 Identities=40% Similarity=0.663 Sum_probs=215.6
Q ss_pred HHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhh----ccCC--Chh
Q 040788 52 RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY----ETST--SEL 125 (365)
Q Consensus 52 r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~----~~~~--~~~ 125 (365)
....|.+.+..+ +.........+++.++++|||+.+|+.||..++|+......+++.|..+... .... ...
T Consensus 182 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 258 (496)
T COG5210 182 ADKLWISYLDPN---PLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAKIPTQEIIS 258 (496)
T ss_pred HHHHHHHHHhcc---cchhhhhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcCCCcHHHHH
Confidence 345677766542 3333344567899999999999999999999999877777788888887642 1222 467
Q ss_pred HHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcC-hhhHHHHHHHHHhcccCCCC
Q 040788 126 DIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS-EEDAFWLMVALLKGAVHAPM 204 (365)
Q Consensus 126 ~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~-E~~aF~~l~~l~~~~~~~~l 204 (365)
+|++|+.||||.+..|+.+.+...+.|+|||.||+.++|++|||||||++||+||.++. |++||||+++||... .+
T Consensus 259 ~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~---~l 335 (496)
T COG5210 259 QIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNY---GL 335 (496)
T ss_pred HHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---cc
Confidence 89999999999999998875555556999999999999999999999999999999998 999999999999952 48
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHH
Q 040788 205 EGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVG 284 (365)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~ 284 (365)
+++|..+++|+...+.++..+++..+|++|+||...|+...+|+++||+|+|++.+|++.++||||++|++|..+++.++
T Consensus 336 ~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~ 415 (496)
T COG5210 336 PGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLA 415 (496)
T ss_pred hhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhCCCHHH
Q 040788 285 LALLTYCHDDLIKLPFEK 302 (365)
Q Consensus 285 lail~~~~~~Ll~~~~~~ 302 (365)
+|++...+..++.++.+.
T Consensus 416 ~~~l~~~~~~l~~~~~~~ 433 (496)
T COG5210 416 LAILKLLRDKLLKLDSDE 433 (496)
T ss_pred HHHHHhhhhhhhccCchh
Confidence 999999999999976543
No 6
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=305.51 Aligned_cols=307 Identities=28% Similarity=0.495 Sum_probs=259.4
Q ss_pred CCCcCCCccCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHH
Q 040788 19 PVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLI 98 (365)
Q Consensus 19 ~~d~yGf~~~~~~~~~~~~~~~~~~~~~~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~l 98 (365)
..+.+||........+. ...++..+++.|++.+..+|.+...+ +..+++++++.|||...|+.+|..+
T Consensus 148 ~~~~~~~~~~~~~~~d~---------~~lre~~k~k~W~~~f~~~G~~~~~~---qt~~~~Klv~~gipe~~rgeiW~l~ 215 (671)
T KOG4347|consen 148 GESALGFGEKGKYKIDP---------RALREWAKEKFWKKYFIKDGPNMNQI---QTILLRKLLYNGFPEDPRGEIWYLA 215 (671)
T ss_pred ccchhcccccCCCCCCh---------HHHHHHHHHHHHHHHHHHhcccccHH---HHHHHHHHHHHhcCCChHHHHHHhh
Confidence 36888886544433221 12456677888999998888876654 2468999999999999999999999
Q ss_pred hCCHhHhhcCcchHHHHhhhccC---CChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHH
Q 040788 99 SGSRDLLLMNPGVYEQLLIYETS---TSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFL 175 (365)
Q Consensus 99 l~~~~~~~~~~~~y~~l~~~~~~---~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~i 175 (365)
+|+-..+..+++.|.+++..... -...+|++|++|..|.|+-|+.+ +|...|+|||.|||+.||+|||||-||.+
T Consensus 216 sGav~~~l~~~Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e--~gi~aLR~vL~Aya~~Np~vGYcQaMNIV 293 (671)
T KOG4347|consen 216 SGAVASLLLNPGEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSE--PGIAALRRVLTAYAWSNPEVGYCQAMNIV 293 (671)
T ss_pred hHHHHHhhcCcHHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCC--CchhhHHHHHHhhhccCCchhHHHHHHHH
Confidence 99988888999999999876444 23467999999999999999976 78899999999999999999999999999
Q ss_pred HHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHh
Q 040788 176 AGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITV 255 (365)
Q Consensus 176 a~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltl 255 (365)
++.+++++.|++|||+++.+.+. .+++||+....|...+..+|+.+++.+.|.++.|+...| ...+...+||+|+
T Consensus 294 ~s~lll~~~EEeafwll~~lce~----~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlsl 368 (671)
T KOG4347|consen 294 GSELLLFCKEEEAFWLLSKLCEI----YIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSL 368 (671)
T ss_pred HHhhhhhhccchHHHHHHHHHHH----hcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHH
Confidence 99999999999999999999998 478999999999999999999999999999999999999 7788999999999
Q ss_pred ccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC-CHHHHHHHHhCCCCCC---------------CChhH
Q 040788 256 FSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-PFEKLIHALRNFPEDA---------------MDPDK 319 (365)
Q Consensus 256 F~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~-~~~~i~~~l~~~~~~~---------------~d~~~ 319 (365)
|...+|++..+||.|+||.+|.+++|.+|+||++.+.+.|+++ |..+++..+.++-..+ +....
T Consensus 369 Fls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~ 448 (671)
T KOG4347|consen 369 FLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNAERILSATDDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQD 448 (671)
T ss_pred HHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHHhccCCCCCccccchhhhhHHHH
Confidence 9999999999999999999999999999999999999999985 5556777766531111 22446
Q ss_pred HHHHHhcC--ccc-hHHHHHHHHHHHHh
Q 040788 320 LLPVAYSI--KVS-KRLEELKSLYEKQN 344 (365)
Q Consensus 320 li~~a~~l--~~~-~~l~~l~~~~~~~~ 344 (365)
|+..||+- .|+ ..|+.+|++++...
T Consensus 449 Ll~~ay~kFg~it~e~ie~~R~K~r~~v 476 (671)
T KOG4347|consen 449 LLATAYEKFGDITDELIEHLRKKHRLGV 476 (671)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 78888763 345 56788888876543
No 7
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=275.40 Aligned_cols=247 Identities=26% Similarity=0.476 Sum_probs=204.7
Q ss_pred HHHHHHHhcCCC--cchHHHHHHHHhCCHh--------HhhcCcchHHHHhhh-----------------ccC-------
Q 040788 76 HVVKRRIRKGIP--DCLRGLVWQLISGSRD--------LLLMNPGVYEQLLIY-----------------ETS------- 121 (365)
Q Consensus 76 ~klk~~~~~GIP--~~~R~~vW~~ll~~~~--------~~~~~~~~y~~l~~~-----------------~~~------- 121 (365)
+++++.+..|+| ..+|+.+|+.++|.-. ......+.|...... +..
T Consensus 26 kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhPls~ 105 (370)
T KOG4567|consen 26 KELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHPLSL 105 (370)
T ss_pred HHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCCCCC
Confidence 579999999999 6899999999998421 111222344433210 000
Q ss_pred -------------CChhHHhhhhhhcCCCccccccCCC-------------------------cchHHHHHHHHHHHHhc
Q 040788 122 -------------TSELDIIRDISRTFPSHVFFQQRHG-------------------------PGQRSLYNVLKAYSVYD 163 (365)
Q Consensus 122 -------------~~~~~I~~Dv~Rt~~~~~~f~~~~~-------------------------~~~~~L~~IL~a~~~~~ 163 (365)
+.-.||++|+.||.|+..+|+.... .......|||..||..|
T Consensus 106 ~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLN 185 (370)
T KOG4567|consen 106 GPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLN 185 (370)
T ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcC
Confidence 0125899999999999998875321 12234689999999999
Q ss_pred CCCCcccchhHHHHHHHHhc-----------ChhhHHHHHHHHHhcccCCCCccccC----CCcHHHHHHHHHHHHHHHH
Q 040788 164 RDVGYVQGMGFLAGLLLLYM-----------SEEDAFWLMVALLKGAVHAPMEGLYQ----VGLPLVQQYLFQFDHLVKE 228 (365)
Q Consensus 164 p~igY~QGm~~ia~~ll~~~-----------~E~~aF~~l~~l~~~~~~~~l~~~~~----~~~~~l~~~~~~~~~ll~~ 228 (365)
|.|||+||||.|+|+++.++ .|+|||.||..+|.. ++++|. .+..|+...+..+..++++
T Consensus 186 pGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMse-----irDnf~k~LDdS~~GI~~~Msr~~~~lk~ 260 (370)
T KOG4567|consen 186 PGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSE-----IRDNFIKTLDDSVGGIHFLMSRLSELLKK 260 (370)
T ss_pred CcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHH-----HHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 99999999999999999887 288999999999988 455553 4556788888999999999
Q ss_pred hchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHhhCCCHHHHHHH
Q 040788 229 HLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFE--GVKIVFKVGLALLTYCHDDLIKLPFEKLIHA 306 (365)
Q Consensus 229 ~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~--g~~~l~~~~lail~~~~~~Ll~~~~~~i~~~ 306 (365)
++-+||.||++.++.|..|+++|+.+|++.+||++.++||||.+|++ +..+++++|.|++...++.|+.-||...++.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999997 5677999999999999999999999999999
Q ss_pred HhCCCCCCCChhHHHHHHhcCcc
Q 040788 307 LRNFPEDAMDPDKLLPVAYSIKV 329 (365)
Q Consensus 307 l~~~~~~~~d~~~li~~a~~l~~ 329 (365)
|++.|.. |...++..|-+++-
T Consensus 341 LQ~yp~t--di~~~l~~A~~Lr~ 361 (370)
T KOG4567|consen 341 LQNYPTT--DISKMLAVADSLRD 361 (370)
T ss_pred HhcCCCC--CHHHHHHHHHHHHh
Confidence 9999976 99999988877763
No 8
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-38 Score=292.08 Aligned_cols=248 Identities=26% Similarity=0.446 Sum_probs=213.2
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHhCCHh--------HhhcCcchHHHHhhh---------ccCCChhHHhhhhhhcCCC
Q 040788 75 PHVVKRRIRKGIPDCLRGLVWQLISGSRD--------LLLMNPGVYEQLLIY---------ETSTSELDIIRDISRTFPS 137 (365)
Q Consensus 75 ~~klk~~~~~GIP~~~R~~vW~~ll~~~~--------~~~~~~~~y~~l~~~---------~~~~~~~~I~~Dv~Rt~~~ 137 (365)
-++|+++++.|||..+|+.+|+.|+|.-- ........|..+..+ .......||.-|++|+.|.
T Consensus 178 ~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm~p~ 257 (484)
T KOG1092|consen 178 LEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRMNPH 257 (484)
T ss_pred HHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCCCcc
Confidence 47899999999999999999999998521 011111234433321 1123457899999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----C---------------------hhhHHHH
Q 040788 138 HVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-----S---------------------EEDAFWL 191 (365)
Q Consensus 138 ~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-----~---------------------E~~aF~~ 191 (365)
.++|..+ ..++.+.|||..++.++|..||+||.|+++.+++.++ + |.|||||
T Consensus 258 ~~l~q~~--~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWC 335 (484)
T KOG1092|consen 258 IPLFQQK--IVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWC 335 (484)
T ss_pred ccchhhH--HHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHH
Confidence 9999875 6899999999999999999999999998887776543 1 7899999
Q ss_pred HHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHH
Q 040788 192 MVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDV 271 (365)
Q Consensus 192 l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~ 271 (365)
+..|++. +.+.|...+||++.....++.|++..|+.+|+||+++|++..+|+++|+.|||.+++|+..++|+||.
T Consensus 336 lskLLD~-----IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDT 410 (484)
T KOG1092|consen 336 LSKLLDG-----IQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDT 410 (484)
T ss_pred HHHHHHH-----hhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 9999998 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC---hHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCCCCCC---ChhHHHHHHhcCcc
Q 040788 272 FLFEG---VKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAM---DPDKLLPVAYSIKV 329 (365)
Q Consensus 272 ~l~~g---~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~~~~~---d~~~li~~a~~l~~ 329 (365)
|++|+ ..|+++||+|+|...+++|++.||.+++.+|+|+|...+ +.+.|+..||.++.
T Consensus 411 Y~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~ 474 (484)
T KOG1092|consen 411 YLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKS 474 (484)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 99995 467999999999999999999999999999999998654 56678889987653
No 9
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=1.5e-36 Score=270.67 Aligned_cols=202 Identities=37% Similarity=0.665 Sum_probs=166.4
Q ss_pred cchHHHHHHHHhCCHh-Hhh------cCcchHHH---HhhhccCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHH
Q 040788 88 DCLRGLVWQLISGSRD-LLL------MNPGVYEQ---LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLK 157 (365)
Q Consensus 88 ~~~R~~vW~~ll~~~~-~~~------~~~~~y~~---l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ 157 (365)
+++|+.||+.|+|... ... .....+.. .......+...+|.+|+.||++++..+. .+.+++.|.+||.
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~--~~~~~~~l~~iL~ 78 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK--NEQNQKSLERILS 78 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--THHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--hcchHHHHHHHHH
Confidence 3689999999999842 000 00001111 1111223446789999999999654444 3478999999999
Q ss_pred HHHHhcCCCCcccchhHHHHHHH-HhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhh
Q 040788 158 AYSVYDRDVGYVQGMGFLAGLLL-LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEH 236 (365)
Q Consensus 158 a~~~~~p~igY~QGm~~ia~~ll-~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~h 236 (365)
+|+.++|++||||||+.|+++++ .+.+|++|||++++++.. .++++|.++.+++...+..++.++++++|++++|
T Consensus 79 ~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~ 154 (214)
T PF00566_consen 79 AYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNY----YLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNH 154 (214)
T ss_dssp HHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTH----HGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred Hhccccccccccchhhhhhhhhhhhcccccchhccccchhcc----cccccccccccccchhhhhHHHHHHhhhhhhhhh
Confidence 99999999999999999999999 567899999999999943 3788999999999999999999999999999999
Q ss_pred hhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHH-HHHHHHHHHHHhHHHhh
Q 040788 237 FTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKI-VFKVGLALLTYCHDDLI 296 (365)
Q Consensus 237 l~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~-l~~~~lail~~~~~~Ll 296 (365)
|.+.|+++..|+.+|++|+|++.+|.+.++|||| ++.+|.++ ++++++|+++..+++||
T Consensus 155 l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 155 LKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999 77799887 99999999999999986
No 10
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=100.00 E-value=6.9e-36 Score=292.38 Aligned_cols=291 Identities=32% Similarity=0.626 Sum_probs=250.3
Q ss_pred HHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhH------hhcCcc-hHHHHhhhccCCChhH
Q 040788 54 RKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDL------LLMNPG-VYEQLLIYETSTSELD 126 (365)
Q Consensus 54 ~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~------~~~~~~-~y~~l~~~~~~~~~~~ 126 (365)
..|.+++..... -.....+++-..++.|||.+-|+.+|..+.-.... ...+++ -|+.++..- .+....
T Consensus 550 ~~wek~~e~~~~----~~k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL-te~qhA 624 (948)
T KOG4436|consen 550 ETWEKILERTRI----KIKKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL-TEQQHA 624 (948)
T ss_pred HHHHHHHHHhhh----cccccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH-HHHHHH
Confidence 368888864111 11235688999999999999999999998742211 122222 266665432 223356
Q ss_pred HhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCcc
Q 040788 127 IIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEG 206 (365)
Q Consensus 127 I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~ 206 (365)
|..|+.||||+|++|+..-|.|+..|+++|.||+..+|++|||||+.+|||+||++|+|+.||-++-.||.. ..++.
T Consensus 625 i~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~---r~~r~ 701 (948)
T KOG4436|consen 625 ILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFD---RGMRK 701 (948)
T ss_pred HHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHH---HhhHh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999987 34788
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHH
Q 040788 207 LYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLA 286 (365)
Q Consensus 207 ~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~la 286 (365)
-|.+++..++..++.+.++++.++++||+|++++.|.|+.|+.+||+|+|+..||+..+.|++|.+|..|..++|.++++
T Consensus 702 qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~ 781 (948)
T KOG4436|consen 702 QYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALS 781 (948)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhCC-CHHHHHHHHhCC-CCCC-CChhHHHHHHhcCccchHHHHHHHHHHHHhhhhhhhhh
Q 040788 287 LLTYCHDDLIKL-PFEKLIHALRNF-PEDA-MDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAE 352 (365)
Q Consensus 287 il~~~~~~Ll~~-~~~~i~~~l~~~-~~~~-~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~~~~~~~ 352 (365)
++..++..|+.+ ++++|+++++++ |... ...+.++...+++.+++.|.+++-+|..+++....+..
T Consensus 782 llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~emeki~~qvf~mDi~kql~eykvey~vLq~El~~~~~ 850 (948)
T KOG4436|consen 782 LLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTEMEKIIKQVFEMDISKQLAEYKVEYHVLQEELTTSSH 850 (948)
T ss_pred HHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999986 699999999996 4432 46778999999999999999999999998877665544
No 11
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=100.00 E-value=6.8e-35 Score=280.20 Aligned_cols=270 Identities=43% Similarity=0.684 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhh-cCcchHHHHhhhccCCChhHH
Q 040788 49 EERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLL-MNPGVYEQLLIYETSTSELDI 127 (365)
Q Consensus 49 e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~-~~~~~y~~l~~~~~~~~~~~I 127 (365)
...+.+.|..+.. .|-.+..+++.++..++..|||..+|+.+|..+++...... .................+..|
T Consensus 113 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (397)
T KOG1102|consen 113 LLEGEQELTALSS----SWLKVILRRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQLDEPEPHESEI 188 (397)
T ss_pred hhhhHHHHHHHHH----HhhhhccccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHhhccCCCchhHH
Confidence 3445556666654 56666667889999999999999999999999998621111 111122222222233333333
Q ss_pred hhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccc
Q 040788 128 IRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGL 207 (365)
Q Consensus 128 ~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~ 207 (365)
.+|+.||||.+..|..+.+.++++|.+|+.+|+.++|++||||||..+|++++.+++|++|||+++.+|... + .+.
T Consensus 189 ~~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~---~-~~~ 264 (397)
T KOG1102|consen 189 IRDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNY---G-LDL 264 (397)
T ss_pred HhhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhcc---c-hhc
Confidence 399999999999999988999999999999999999999999999999999999999999999999999983 3 445
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHH
Q 040788 208 YQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL 287 (365)
Q Consensus 208 ~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lai 287 (365)
|..++++++.....++.+++...|.++.|+...++...+|+.+|++|+|+..+|++.++|+||.++.+|..+++.+++++
T Consensus 265 ~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l 344 (397)
T KOG1102|consen 265 LSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLAL 344 (397)
T ss_pred ccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhhCCCHHHHHHHHhCCCCCCCChhHHHHHHhc
Q 040788 288 LTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYS 326 (365)
Q Consensus 288 l~~~~~~Ll~~~~~~i~~~l~~~~~~~~d~~~li~~a~~ 326 (365)
++...+.+++.+++.+++++.+.+....+....-..++.
T Consensus 345 ~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~ 383 (397)
T KOG1102|consen 345 LKHKADDLLDLDFESLLSYLRVDLPKSYDSELSDKYLLE 383 (397)
T ss_pred hhhhhHHHhhccHHHHHHHHhcccHhhcCccchhHHHHH
Confidence 999999999999999999999975544444444444433
No 12
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-35 Score=250.12 Aligned_cols=220 Identities=32% Similarity=0.617 Sum_probs=196.3
Q ss_pred CCcCCCccCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHh
Q 040788 20 VDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLIS 99 (365)
Q Consensus 20 ~d~yGf~~~~~~~~~~~~~~~~~~~~~~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll 99 (365)
.|++||+.......-. +... ....-+.|.+||..|++ +|..+.+++.++++-+|++|||+++|++.|+.|+
T Consensus 47 pdr~gfi~~~q~a~~~---k~~~--~~~~L~~ReskwL~mld----nw~~~m~kk~~~ir~rcrkgippslr~Raw~yls 117 (267)
T KOG2221|consen 47 PDRFGFIEGEQGAQGK---KEPE--TRGELRYRESKWLHMLD----NWHEEMRKKQKKIRPRCRKGIPPSLRGRAWRYLS 117 (267)
T ss_pred CcccceeecccccccC---CCcc--cHHHHHhhHHHHHHHHH----HHHHHHHhccccccchhhcCCCcccchhHHHhhc
Confidence 4999998866443221 1111 23345678999999998 8999999999999999999999999999999999
Q ss_pred CCHhHhhcCcchHHHHhhhccCCC-hhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHH
Q 040788 100 GSRDLLLMNPGVYEQLLIYETSTS-ELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGL 178 (365)
Q Consensus 100 ~~~~~~~~~~~~y~~l~~~~~~~~-~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ 178 (365)
|+......||..|..+......+. ...|.+|++|-||.|.+|......+++.|+|+|.||..++|+.||||+-..||++
T Consensus 118 Ga~~~~~~np~~~~~~~~~pG~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~ 197 (267)
T KOG2221|consen 118 GAPSPPPKNPVVFDELGPAPGDPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAV 197 (267)
T ss_pred CCCCCCCCCcchhhhccCCCCCCcchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHH
Confidence 998888889999999886654443 4579999999999999999888889999999999999999999999999999999
Q ss_pred HHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHH
Q 040788 179 LLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWF 252 (365)
Q Consensus 179 ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ 252 (365)
+|+++++++|||||+.+.+. ++.++|+.++..++.+-.++..|+++.+|..|.|+...++++.+|.+.||
T Consensus 198 llmhmp~rdaf~~~vqicek----ylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 198 LLMHMPARDAFWCFVQICEK----YLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHhcccHHHHHHHHHHHHHH----HcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999999999999999998 47999999999999999999999999999999999999999999999997
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=261.08 Aligned_cols=242 Identities=24% Similarity=0.431 Sum_probs=214.1
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhhhhcCCCccccccCCCcchHHHHH
Q 040788 75 PHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYN 154 (365)
Q Consensus 75 ~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~ 154 (365)
...+-+..+.|||+-+|+.+|..|++.... ....|..+-.......+.||+.|++|+.......+.+ .+++.|+|
T Consensus 345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~---~~a~y~~IDk~Ts~~tdrqievdiprchQyd~~lsSp--~~~r~lrR 419 (725)
T KOG1093|consen 345 RLQILREAYVDVPPLYRGFIWAALLQLEEN---HTAFYTLIDKGTSHSTDRQIEVDIPRCHQYDELLSSP--KGHRKLRR 419 (725)
T ss_pred HHHHHHHhccCCChhHhHHHHHHHhcCccc---cchhhhhhhcCCCCcchhhhhcccchhhhcccccCCH--HHHHHHHH
Confidence 344555667899999999999999987532 2345766655555677899999999999988877765 78999999
Q ss_pred HHHHHHHhcCCCCcccchhHHHHHHHHh-c-ChhhHHHHHHHHHhcccCCCCccccCC-CcHHHHHHHHHHHHHHHHhch
Q 040788 155 VLKAYSVYDRDVGYVQGMGFLAGLLLLY-M-SEEDAFWLMVALLKGAVHAPMEGLYQV-GLPLVQQYLFQFDHLVKEHLP 231 (365)
Q Consensus 155 IL~a~~~~~p~igY~QGm~~ia~~ll~~-~-~E~~aF~~l~~l~~~~~~~~l~~~~~~-~~~~l~~~~~~~~~ll~~~~P 231 (365)
+|.|++..+|...|.||+..+|++|+.. + +|.-||.|+..++-+++ ..+|.. +..-+++++.+|.+++..++|
T Consensus 420 vLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc----q~fflkdns~vikeyLs~f~~l~AfhDp 495 (725)
T KOG1093|consen 420 VLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC----QHFFLKDNSNVIKEYLSMFSQLLAFHDP 495 (725)
T ss_pred HHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH----HHHHhhcCchhHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999764 3 78889999999999854 556665 556688999999999999999
Q ss_pred hhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCC
Q 040788 232 KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFP 311 (365)
Q Consensus 232 ~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~ 311 (365)
+|++||...|+.+.+|+++||+|+|++.||.+.++.+||-++..++.|.+.+++|++...++.||.+++.|++.++.+.|
T Consensus 496 eL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~lR~~LLa~nfne~illf~d~p 575 (725)
T KOG1093|consen 496 ELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQLRDPLLACNFNECILLFSDLP 575 (725)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhhhhhhCCchhheeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHhcC
Q 040788 312 EDAMDPDKLLPVAYSI 327 (365)
Q Consensus 312 ~~~~d~~~li~~a~~l 327 (365)
.+|.|..+...+++
T Consensus 576 --dldId~~Ires~~l 589 (725)
T KOG1093|consen 576 --DLDIDVCIRESYHL 589 (725)
T ss_pred --cccHHHHHHHHhhh
Confidence 36999999998875
No 14
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=214.39 Aligned_cols=250 Identities=24% Similarity=0.444 Sum_probs=182.3
Q ss_pred HHHHHHh-cCCCcchHHHHHHHHhCCHh----------HhhcCcchHHHHhhhcc---CCC---------hhHHhhhhhh
Q 040788 77 VVKRRIR-KGIPDCLRGLVWQLISGSRD----------LLLMNPGVYEQLLIYET---STS---------ELDIIRDISR 133 (365)
Q Consensus 77 klk~~~~-~GIP~~~R~~vW~~ll~~~~----------~~~~~~~~y~~l~~~~~---~~~---------~~~I~~Dv~R 133 (365)
+|++.+. .||..++|+.||+.|+.... .+......|+.+..+.. ++. ...+++||-|
T Consensus 426 ~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tvdkdvvr 505 (781)
T KOG2224|consen 426 KLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTVDKDVVR 505 (781)
T ss_pred HhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEEecceee
Confidence 5667765 79999999999999997421 22333345666543221 111 1236799999
Q ss_pred cCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHH-hcChhhHHHHHHHHHhcccCC----------
Q 040788 134 TFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLL-YMSEEDAFWLMVALLKGAVHA---------- 202 (365)
Q Consensus 134 t~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~-~~~E~~aF~~l~~l~~~~~~~---------- 202 (365)
|.+++++|...++++.+++++||..||.|||.+||.|||+.+.|+.|. +-+|.++||||+.+|......
T Consensus 506 tdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevld 585 (781)
T KOG2224|consen 506 TDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLD 585 (781)
T ss_pred ccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhc
Confidence 999999999999999999999999999999999999877766665543 345555555555555431000
Q ss_pred ----------CCc-ccc--CCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc--hhchHHHHHHhccccCChHHHHH
Q 040788 203 ----------PME-GLY--QVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP--SMYASQWFITVFSYSFPFHLALR 267 (365)
Q Consensus 203 ----------~l~-~~~--~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~--~~~~~~W~ltlF~~~lp~~~~lr 267 (365)
-|. .+| ++....+...+..+..|++..+|..|+||..+|-+. .+|+.+|++.+|.++||-..++|
T Consensus 586 esdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~air 665 (781)
T KOG2224|consen 586 ESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIR 665 (781)
T ss_pred cccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHH
Confidence 000 122 233334555566689999999999999999987443 46999999999999999999999
Q ss_pred HHHHHHhc--ChHHHHHHHHHHHHHhHHHhhC--CCHHHHHHHHhCCCCCCCChhHHHHHHhcC
Q 040788 268 IWDVFLFE--GVKIVFKVGLALLTYCHDDLIK--LPFEKLIHALRNFPEDAMDPDKLLPVAYSI 327 (365)
Q Consensus 268 iwD~~l~~--g~~~l~~~~lail~~~~~~Ll~--~~~~~i~~~l~~~~~~~~d~~~li~~a~~l 327 (365)
||..-++. -..|.+++|+||+.++.++.+. +-.++++--+.|+.-. +|-+.++.+|..+
T Consensus 666 iweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~-mdgelilrkar~l 728 (781)
T KOG2224|consen 666 IWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMH-MDGELILRKARGL 728 (781)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhh-cCchhhHHHHHHH
Confidence 99987764 4678889999999999988886 4566777777776543 5777777777543
No 15
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-25 Score=210.67 Aligned_cols=201 Identities=30% Similarity=0.474 Sum_probs=166.1
Q ss_pred hHHhhhhhhcCCCc-cccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc--C-----------------
Q 040788 125 LDIIRDISRTFPSH-VFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM--S----------------- 184 (365)
Q Consensus 125 ~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~--~----------------- 184 (365)
..|+.|+.||||.+ .+|+.. ..+..|++||..||..||.+||-|||+.+.|++++++ +
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs~--~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f 183 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQSP--EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF 183 (625)
T ss_pred HhhcchhhccCcchhhhhcCc--hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence 45889999999999 777764 5788999999999999999999999999999988764 1
Q ss_pred -hh-----------hHH--HHHHHHHhcc-------------------cCCCCccccCCCcHHHHHHHHHHHHHHHHhch
Q 040788 185 -EE-----------DAF--WLMVALLKGA-------------------VHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLP 231 (365)
Q Consensus 185 -E~-----------~aF--~~l~~l~~~~-------------------~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P 231 (365)
|. +++ -+++.+|... ..+.+.+.+.++.+.+......+..++.+.++
T Consensus 184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~ 263 (625)
T KOG1091|consen 184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK 263 (625)
T ss_pred chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence 11 222 2344444321 11223333445567777888889999999999
Q ss_pred hhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHH-HHHhcChHHH--HHHHHHHHHHhHHHhhCCCHHHHHHHHh
Q 040788 232 KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWD-VFLFEGVKIV--FKVGLALLTYCHDDLIKLPFEKLIHALR 308 (365)
Q Consensus 232 ~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD-~~l~~g~~~l--~~~~lail~~~~~~Ll~~~~~~i~~~l~ 308 (365)
.+|.||.+.||.|.+|..+|+..||.++||+..++.+|| +.+++++... -++++|+|..+++.|+..+...+++.|.
T Consensus 264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm 343 (625)
T KOG1091|consen 264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQTCLQYLM 343 (625)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHh
Confidence 999999999999999999999999999999999999999 8888887654 4889999999999999998888999999
Q ss_pred CCCCCCCChhHHHHHHhcCc
Q 040788 309 NFPEDAMDPDKLLPVAYSIK 328 (365)
Q Consensus 309 ~~~~~~~d~~~li~~a~~l~ 328 (365)
++|.. .|.+.+++.|..++
T Consensus 344 ~yP~~-~Dv~~~iekAl~l~ 362 (625)
T KOG1091|consen 344 NYPEI-IDVDKFIEKALHLQ 362 (625)
T ss_pred cCCCc-CcHHHHHHHHHHHH
Confidence 99986 79999999997765
No 16
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-24 Score=195.53 Aligned_cols=231 Identities=19% Similarity=0.239 Sum_probs=190.5
Q ss_pred CcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhhhhcCCCccccccC--CCcchHHHHHHHHHHHHhcC
Q 040788 87 PDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQR--HGPGQRSLYNVLKAYSVYDR 164 (365)
Q Consensus 87 P~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~~IL~a~~~~~p 164 (365)
-+++|+.||..|+|..-.. .+.-..+......+...|+..|+.|+|...+.-... ....++.|..++......+|
T Consensus 63 ~dslRk~vWp~L~~~~~n~---~~~~~~~~~~q~hkd~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP 139 (395)
T KOG2595|consen 63 NDSLRKDVWPELLALNINH---LDATSTLTPVQKHKDYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYP 139 (395)
T ss_pred cHHHHHHHHHHHhccccCC---CcccccCChhhhCcccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6689999999999965322 111122222344566789999999998765531110 11345677777777778899
Q ss_pred CCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Q 040788 165 DVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244 (365)
Q Consensus 165 ~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~ 244 (365)
++.|.||.++||..||++++|.+|+-++..+-.. ++++|+.+.+.+....+..+..+++..+|++|+.|.+..+.+
T Consensus 140 ~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~----~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt 215 (395)
T KOG2595|consen 140 TLNYYQGYHDIVVTFLLVVGELEALSLMEELSTL----HLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT 215 (395)
T ss_pred CcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc
Confidence 9999999999999999999999999888888755 589999999999999999999999999999999999988887
Q ss_pred hhchHHHHHHhccccCC-hHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC--CHHHHHHHHhCCCCCCCChhHHH
Q 040788 245 SMYASQWFITVFSYSFP-FHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL--PFEKLIHALRNFPEDAMDPDKLL 321 (365)
Q Consensus 245 ~~~~~~W~ltlF~~~lp-~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~--~~~~i~~~l~~~~~~~~d~~~li 321 (365)
+|+.+|++|||+|.+. +..++|++|+|++..+-..++++.+++...+.+|+++ ++.-+-..|..+|.. ...|.++
T Consensus 216 -lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~-lp~d~li 293 (395)
T KOG2595|consen 216 -LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQD-LPYDTLI 293 (395)
T ss_pred -eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccc-cCHHHHH
Confidence 6999999999999996 8999999999999998888999999999999999996 556677778888886 7899999
Q ss_pred HHHhc
Q 040788 322 PVAYS 326 (365)
Q Consensus 322 ~~a~~ 326 (365)
+.+..
T Consensus 294 k~s~~ 298 (395)
T KOG2595|consen 294 KESVL 298 (395)
T ss_pred HHHHH
Confidence 98744
No 17
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.89 E-value=5.6e-23 Score=202.18 Aligned_cols=329 Identities=29% Similarity=0.437 Sum_probs=253.4
Q ss_pred CCCCCCCcCCCccCCCCCCc--hhhhh-hhchHHHHHHHHHHHHHHHHhhcc--------CCCcchhcccChHHHHHHHh
Q 040788 15 PSPRPVDRFGFVKQEHGSPH--EGVIK-SRSAIQFEREERRVRKWRKMIGVG--------GSDWKHYVRRKPHVVKRRIR 83 (365)
Q Consensus 15 ~~~~~~d~yGf~~~~~~~~~--~~~~~-~~~~~~~~~e~~r~~kW~~~l~~~--------~~~~~~~~~~~~~klk~~~~ 83 (365)
.+....|.+||.-.....+- +..+. .........++.-.--|..+.... ...|+........+++.+|.
T Consensus 103 q~~~~~~~~g~~sr~~sg~s~~~~v~~v~~~~n~s~~DE~m~Tl~~a~s~~~~~~~~~~~~~~~E~~r~~s~~~l~e~Ve 182 (948)
T KOG4436|consen 103 QSISHVSHFGFISRESSGNSQLEAVCYVFQCQNESLVDEDMWTLWGAFSAAASQQHAKYAMDLWERCRKKSLHKLKELVE 182 (948)
T ss_pred hhhhhhhhcCcccccCCCCCcccceeeeeccCCCcchhhhHHHHHHHHhhhhhhhcccccchhhhhhhhhchhhhHHHHh
Confidence 34556899999664433221 11111 001112233444445666665421 12576655667789999999
Q ss_pred cCCCcchHHHHHHHHhCCHhHhhc-CcchHHHHhhhccCCChh-----HHhhhhhhcCCCccccccCCCc-------chH
Q 040788 84 KGIPDCLRGLVWQLISGSRDLLLM-NPGVYEQLLIYETSTSEL-----DIIRDISRTFPSHVFFQQRHGP-------GQR 150 (365)
Q Consensus 84 ~GIP~~~R~~vW~~ll~~~~~~~~-~~~~y~~l~~~~~~~~~~-----~I~~Dv~Rt~~~~~~f~~~~~~-------~~~ 150 (365)
+|||+..|..+|..|+...+.... --+.|..+.... +..+. -|..|+.||.|.|.+|...... +++
T Consensus 183 ~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s-~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d 261 (948)
T KOG4436|consen 183 GGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCS-SQQEKELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQD 261 (948)
T ss_pred cCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHH
Confidence 999999999999999976432210 123455554322 22222 5789999999999999986554 689
Q ss_pred HHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhc
Q 040788 151 SLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHL 230 (365)
Q Consensus 151 ~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~ 230 (365)
.|+++..+|+...-++|||||-++++|++++.++++.+|..++.+|.. +.++..+.+.+..+...++.++...+...
T Consensus 262 ~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~---~rl~~l~kpe~~~l~~~~~q~e~~~q~~s 338 (948)
T KOG4436|consen 262 QLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL---YRLRELSKPEMEPLGLCMFQLECTNQDQS 338 (948)
T ss_pred HHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh---hcccccCCcccchhHHHHHhhcccccccc
Confidence 999999999999999999999999999999999999999999999998 45788999999889888889999999999
Q ss_pred h-hhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHH-HHhHHHhhCCCHHHHHHHHh
Q 040788 231 P-KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALL-TYCHDDLIKLPFEKLIHALR 308 (365)
Q Consensus 231 P-~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail-~~~~~~Ll~~~~~~i~~~l~ 308 (365)
| .++.|+.+.+++.++|...||++.|...+|+...-|+.|+|.++|....|++.+|++ ....-++...|+++....++
T Consensus 339 p~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d~~~~s~D~EG~~~~~q 418 (948)
T KOG4436|consen 339 PMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRDIELESLDMEGMLSYFQ 418 (948)
T ss_pred hhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhhhhhhccCccccccchh
Confidence 9 999999999999999999999999999999999999999999999999999999999 44555677789998877776
Q ss_pred C-CCCC-CCChhHHHHHHhcCccc-hHHHHHHHHHHHHhhhh
Q 040788 309 N-FPED-AMDPDKLLPVAYSIKVS-KRLEELKSLYEKQNKKV 347 (365)
Q Consensus 309 ~-~~~~-~~d~~~li~~a~~l~~~-~~l~~l~~~~~~~~~~~ 347 (365)
. .+.. .-+++.+...|+...+. +....+++.|..+..+.
T Consensus 419 r~~s~~vggtp~k~~t~a~q~q~~lkv~~~l~ks~s~~rtke 460 (948)
T KOG4436|consen 419 RNRSNTVGGTPDKLRTAAWQVQINLKVMKPLEKSPSAMRTKE 460 (948)
T ss_pred hccccccCCCCchHHHHHHHHhHhHHHhhhccCChHHHHHhh
Confidence 4 3322 25788999999888876 55677777776655443
No 18
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.86 E-value=6.5e-22 Score=193.93 Aligned_cols=235 Identities=26% Similarity=0.418 Sum_probs=187.7
Q ss_pred cCCCcchHHHHHHHHhCCHhHhhcCc---------chHHHHhhhccC-------------CChhHHhhhhhhcCCCcccc
Q 040788 84 KGIPDCLRGLVWQLISGSRDLLLMNP---------GVYEQLLIYETS-------------TSELDIIRDISRTFPSHVFF 141 (365)
Q Consensus 84 ~GIP~~~R~~vW~~ll~~~~~~~~~~---------~~y~~l~~~~~~-------------~~~~~I~~Dv~Rt~~~~~~f 141 (365)
.|+-+.+|+.+|+.+.+......... ..|......... .....|.+|+.||.+.+.++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~ 255 (488)
T KOG2197|consen 176 GGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFY 255 (488)
T ss_pred cccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhhh
Confidence 45666999999999987432211111 124433322111 11245899999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHH
Q 040788 142 QQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLF 220 (365)
Q Consensus 142 ~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 220 (365)
..+.++....|..||.+|+.+++++||||||+++.++++.++ +|.+|||||+.+|+. +...|..+..+++..+.
T Consensus 256 ~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~-----~~~nF~~d~~~~~~Ql~ 330 (488)
T KOG2197|consen 256 EGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDR-----LRHNFRIDQSGMQTQLA 330 (488)
T ss_pred hcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHH-----HhhcCccccccHHHHhh
Confidence 876545689999999999999999999999999999998876 678899999999998 56678888889999999
Q ss_pred HHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHhhCC
Q 040788 221 QFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFE--GVKIVFKVGLALLTYCHDDLIKL 298 (365)
Q Consensus 221 ~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~--g~~~l~~~~lail~~~~~~Ll~~ 298 (365)
.+..+++..+|.++.||+..+.....++++|++.+|-++|.++.++++|.++... ...+.++++.|++....+.|+..
T Consensus 331 ~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~~~ 410 (488)
T KOG2197|consen 331 QLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLMEQ 410 (488)
T ss_pred hhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999875 56788999999999988888863
Q ss_pred --CHHHHHHHHhCCCCCCCChhHHHHHH
Q 040788 299 --PFEKLIHALRNFPEDAMDPDKLLPVA 324 (365)
Q Consensus 299 --~~~~i~~~l~~~~~~~~d~~~li~~a 324 (365)
++.+++..+...... .|...++..|
T Consensus 411 ~~~~~e~l~~i~~~~~~-~d~~~~~~~A 437 (488)
T KOG2197|consen 411 GKSFNEVLKHVNLLSEK-ADVLWVLVRA 437 (488)
T ss_pred CccchhHHhhccccccc-chhhhHHHHH
Confidence 556666656555433 4555555554
No 19
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.72 E-value=4.8e-17 Score=151.48 Aligned_cols=242 Identities=20% Similarity=0.369 Sum_probs=175.7
Q ss_pred CCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcC
Q 040788 85 GIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDR 164 (365)
Q Consensus 85 GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p 164 (365)
|=|... |+.++|+... ...-..+..+. ..+...+|.+|..|--.....-.+..-+....|..++.-|+. +.
T Consensus 36 G~~~~~----W~~~L~V~~K-~d~l~~wd~iy---dLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-~R 106 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMK-PNPLDDWDQIY---DLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-KR 106 (669)
T ss_pred CCCHHH----HHHHhcccCC-CCchhhHHHHh---CCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-cc
Confidence 555554 9999998632 11223455543 234445678887665433322221112334468888877765 55
Q ss_pred CCCcccchhHH---HHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhcc
Q 040788 165 DVGYVQGMGFL---AGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEM 241 (365)
Q Consensus 165 ~igY~QGm~~i---a~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~ 241 (365)
++.|....+.| -.++++.+|..+.|-+|.+++..+.+. +.-..+ ..+..|.-||+.++|+|..||....
T Consensus 107 n~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk---dcrpkg-----~~Fh~FRLLlqYHdPelc~~Ldtkk 178 (669)
T KOG3636|consen 107 NMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK---DCRPKG-----QIFHLFRLLLQYHDPELCNHLDTKK 178 (669)
T ss_pred CCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC---CCCCCC-----ccchHHHHHHHhcCHHHhhhhhccc
Confidence 67787766633 445566789999999999999996542 222222 2356788999999999999999999
Q ss_pred CCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHH-HHHHHHHHHHHhHHHhhCC---CHHHHHHHHhCCCCCC--C
Q 040788 242 INPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKI-VFKVGLALLTYCHDDLIKL---PFEKLIHALRNFPEDA--M 315 (365)
Q Consensus 242 i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~-l~~~~lail~~~~~~Ll~~---~~~~i~~~l~~~~~~~--~ 315 (365)
+.|++|+..||-+||+.+.+.+.+.-+||.|+-.+.+| +|++++.||..-+++||+. +.|+++++|.++|... .
T Consensus 179 itPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~e 258 (669)
T KOG3636|consen 179 ITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVE 258 (669)
T ss_pred cCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccc
Confidence 99999999999999999999999999999999998777 5688889999999999984 5789999999998743 5
Q ss_pred ChhHHHHHHhcCccchHHHHHHHHHHHHh
Q 040788 316 DPDKLLPVAYSIKVSKRLEELKSLYEKQN 344 (365)
Q Consensus 316 d~~~li~~a~~l~~~~~l~~l~~~~~~~~ 344 (365)
|+..++..|.-.. .+..+.+++.|....
T Consensus 259 DvpDffsLAqyY~-~KTP~sfrkD~~~~l 286 (669)
T KOG3636|consen 259 DVPDFFSLAQYYS-DKTPESFRKDFHYIL 286 (669)
T ss_pred cchhHHHHHHHHh-hcChHHhhhhhhHhh
Confidence 7888888874333 345567777765543
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=8.6e-14 Score=124.04 Aligned_cols=247 Identities=21% Similarity=0.337 Sum_probs=174.7
Q ss_pred HHHHHHHhcCC---CcchHHHHHHHHhCCHhHhhcC--cchHHHHhhhc--cCC-ChhHHhhhhhhcC-CCccccccCCC
Q 040788 76 HVVKRRIRKGI---PDCLRGLVWQLISGSRDLLLMN--PGVYEQLLIYE--TST-SELDIIRDISRTF-PSHVFFQQRHG 146 (365)
Q Consensus 76 ~klk~~~~~GI---P~~~R~~vW~~ll~~~~~~~~~--~~~y~~l~~~~--~~~-~~~~I~~Dv~Rt~-~~~~~f~~~~~ 146 (365)
..+|++.|.|- .+.+|++|+..|..----.... ...|..+.-.- ... +-.-+..-+..|- |+. .. +.
T Consensus 33 qelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqvpsy-cl---na 108 (559)
T KOG2801|consen 33 QELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSY-CL---NA 108 (559)
T ss_pred HHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcCchh-hh---cC
Confidence 34677777665 4567888888776421111111 23466554221 111 0000111111121 111 11 22
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHh-cChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHH
Q 040788 147 PGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLY-MSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHL 225 (365)
Q Consensus 147 ~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~-~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l 225 (365)
.|...++.||.+.+...|+|++|+.+.-+++++|.| .+|.++|--.+.++...- +=+.+...++-.+...+-.|..+
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacnd--pgrrlidqsflafesscmtfgdl 186 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACND--PGRRLIDQSFLAFESSCMTFGDL 186 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecC--cchhhhhhHHHHHHhhhhhHHHH
Confidence 456679999999999999999999999999999988 489999998888876532 22445555666677778889999
Q ss_pred HHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC----C--
Q 040788 226 VKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL----P-- 299 (365)
Q Consensus 226 l~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~----~-- 299 (365)
+.+++...++.+....-+.......|-..+|. ++|+-...|++|+|+.+|.++++++++||++...+.--.. +
T Consensus 187 vnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegykvlyrvalailkffhkvragqplesdsv 265 (559)
T KOG2801|consen 187 VNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQPLESDSV 265 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHhhcCCCCccchH
Confidence 99999998888876655555667788888886 8999999999999999999999999999999988754432 2
Q ss_pred HHHHHHHHhCCCCCCCChhHHHHHHhcCccc
Q 040788 300 FEKLIHALRNFPEDAMDPDKLLPVAYSIKVS 330 (365)
Q Consensus 300 ~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~ 330 (365)
..+|-.+.+++.+. ++++.++++||.+++.
T Consensus 266 kqdirtfvrdiakt-vspekllekafairlf 295 (559)
T KOG2801|consen 266 KQDIRTFVRDIAKT-VSPEKLLEKAFAIRLF 295 (559)
T ss_pred HHHHHHHHHHHHhh-CCHHHHHHHHHHHHHh
Confidence 24677888888776 7999999999999985
No 21
>PF14961 BROMI: Broad-minded protein
Probab=97.72 E-value=0.0011 Score=70.36 Aligned_cols=126 Identities=14% Similarity=0.196 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHh
Q 040788 216 QQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDL 295 (365)
Q Consensus 216 ~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~L 295 (365)
...+..++.+|+...|.++.-|.-.|..|...+.+|+..+|=+.+++..+....=.-+..|..+-+++++|+|+..+++|
T Consensus 1164 ~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~i 1243 (1296)
T PF14961_consen 1164 FCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEI 1243 (1296)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHH
Confidence 34567789999999999999999999999999999999999999999988888888888999999999999999999999
Q ss_pred hCCC-HHHHHHHHhCCCCCCCChhHHHHHHhcCccchHHHHHHHHHHHHhhhhhhh
Q 040788 296 IKLP-FEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQS 350 (365)
Q Consensus 296 l~~~-~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~~~~~ 350 (365)
|+.. ..++..+|+.-+-..+.+..-+ +-++.|+..|+...-+..+.
T Consensus 1244 lq~~q~q~L~~flke~~l~gF~~~~~~---------~yM~~Le~~yR~~vL~~m~~ 1290 (1296)
T PF14961_consen 1244 LQHTQTQDLQVFLKEEALRGFRVSDYL---------EYMENLEQRYRPRVLTDMRN 1290 (1296)
T ss_pred HHhhhhchHHHHhhhccccceeHHhHH---------HHHHHHHHHhHhHHHHHHHH
Confidence 9854 3446666655443322222211 34677888887766555443
No 22
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.56 E-value=2.6e-06 Score=81.43 Aligned_cols=230 Identities=21% Similarity=0.318 Sum_probs=140.4
Q ss_pred HHHHHHhcCCCcchHHHHHHHHhCCHh------HhhcC----cchHHHHhhhccCCChhHHhhhhhhcCCCccccccCCC
Q 040788 77 VVKRRIRKGIPDCLRGLVWQLISGSRD------LLLMN----PGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHG 146 (365)
Q Consensus 77 klk~~~~~GIP~~~R~~vW~~ll~~~~------~~~~~----~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~ 146 (365)
.+..-++.|+-...|+.+|+...+... ....+ ...|++.+.......-..|++|+.|...+..+|.+.
T Consensus 550 ~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~~~~~~~~kd~e~~~~~~~~fs~~-- 627 (813)
T KOG1648|consen 550 VLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFRANLHRIDKDVERCDRNLMFFSNK-- 627 (813)
T ss_pred HHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHhhheeeecchhhhCcchheeecCC--
Confidence 456667889999999999999887421 11111 123655443333333456889999999999999875
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcC-hhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHH
Q 040788 147 PGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS-EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHL 225 (365)
Q Consensus 147 ~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~-E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l 225 (365)
.+.++ +++...|...+-+-||.|||.++.++++.-+. |.-+--|+.-+|-.- ++.|. ..++....+-.+ ++
T Consensus 628 ~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q-----~~~~~-q~~~~~~~l~~~-r~ 699 (813)
T KOG1648|consen 628 DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ-----RGKFP-QRPGMSKCLLNL-RL 699 (813)
T ss_pred cchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh-----cccCC-CCCCcccccccc-cc
Confidence 44555 78888888888899999999999999887652 222222332233221 11121 122222222111 24
Q ss_pred HHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHhHHHhhC--C
Q 040788 226 VKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEG-----VKIVFKVGLALLTYCHDDLIK--L 298 (365)
Q Consensus 226 l~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g-----~~~l~~~~lail~~~~~~Ll~--~ 298 (365)
++..+|-... +.. .....++||+.-|.+.++-+....+|..+.... ..+-++++++. ....+.++. .
T Consensus 700 ~~v~~~l~s~-id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t~~~ 773 (813)
T KOG1648|consen 700 IQVVDPLISD-IDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT-TNYHDVLITNNF 773 (813)
T ss_pred hhhhcchhcc-hhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH-HhhHHHHhhccc
Confidence 4444552211 111 123458999999999999998888888887653 34566777777 444455554 3
Q ss_pred CHHHHHHHHhCCCCCCCChhHHHHH
Q 040788 299 PFEKLIHALRNFPEDAMDPDKLLPV 323 (365)
Q Consensus 299 ~~~~i~~~l~~~~~~~~d~~~li~~ 323 (365)
+..+.+++++.... ..+.+.++..
T Consensus 774 ~~t~~i~~~~~~~e-~~~c~r~~~~ 797 (813)
T KOG1648|consen 774 DYTDMIKFFNEMAE-RHDCSRLLSS 797 (813)
T ss_pred chHHHHHHHHHHHh-hhhhHHHHhc
Confidence 55567777766533 2567766543
No 23
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=89.22 E-value=0.047 Score=53.21 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=94.0
Q ss_pred HhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCcc
Q 040788 127 IIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEG 206 (365)
Q Consensus 127 I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~ 206 (365)
|..|+..|+. +..+.+..++. |.+|..+++++||| +..+.+ . ..+
T Consensus 3 ~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~--------------------~-----~~~ 47 (397)
T KOG1102|consen 3 IDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS--------------------K-----SDG 47 (397)
T ss_pred CCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh--------------------c-----ccc
Confidence 4556666665 44444433333 78899999999999 555554 1 344
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHH
Q 040788 207 LYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLA 286 (365)
Q Consensus 207 ~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~la 286 (365)
+...+...+...............+.-..|+...+ ........|....|.+......+.++||.+..+|...+....-+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (397)
T KOG1102|consen 48 FQSSNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSS 126 (397)
T ss_pred cccCCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHHHHHHHHH
Confidence 44444444444333334444455566667777777 77778889999999999999999999999999999999988888
Q ss_pred HHHHhHHHhhC
Q 040788 287 LLTYCHDDLIK 297 (365)
Q Consensus 287 il~~~~~~Ll~ 297 (365)
.++.+...+++
T Consensus 127 ~~~~~~~~~~~ 137 (397)
T KOG1102|consen 127 WLKVILRRPLK 137 (397)
T ss_pred hhhhccccHHH
Confidence 88876444443
No 24
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=71.66 E-value=1.4 Score=42.51 Aligned_cols=34 Identities=41% Similarity=0.751 Sum_probs=30.3
Q ss_pred CCcccchhHHHHHHHH-hcChhhHHHHHHHHHhcc
Q 040788 166 VGYVQGMGFLAGLLLL-YMSEEDAFWLMVALLKGA 199 (365)
Q Consensus 166 igY~QGm~~ia~~ll~-~~~E~~aF~~l~~l~~~~ 199 (365)
||..|||+.++|++|- +++|.++||||+.+|.+.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcce
Confidence 6888999999988775 789999999999999864
No 25
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=68.61 E-value=5.8 Score=26.50 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCC
Q 040788 222 FDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFP 261 (365)
Q Consensus 222 ~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp 261 (365)
|..+-.++.|+.-..|++.||+.++-...-|++||.+...
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 5677788999999999999999999999999999986544
No 26
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=56.46 E-value=5.2 Score=40.12 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=33.7
Q ss_pred HHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCH
Q 040788 53 VRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSR 102 (365)
Q Consensus 53 ~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~ 102 (365)
.++|...+..+|..+. ...-++.-...||++++|+.+|..|+|..
T Consensus 50 ~~~~~~~f~~~~~~~~-----~~~~l~~i~~~gi~psir~evw~fll~~y 94 (488)
T KOG2197|consen 50 PEKWQANFDPDGRLSG-----FVKLLKLIILGGIDPSIRGEVWEFLLGCY 94 (488)
T ss_pred hhhhhhccCCCccccc-----hhhhheeeecCCCCCcccchhHHHHhccc
Confidence 5789988877766553 22334444569999999999999999964
No 27
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=30.79 E-value=25 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.9
Q ss_pred hHHHHHHHhcCCCcchHHHHHHH
Q 040788 75 PHVVKRRIRKGIPDCLRGLVWQL 97 (365)
Q Consensus 75 ~~klk~~~~~GIP~~~R~~vW~~ 97 (365)
+.++|. .|||...|+.+-..
T Consensus 31 s~~LK~---~GIp~r~RryiL~~ 50 (57)
T PF09597_consen 31 SKQLKE---LGIPVRQRRYILRW 50 (57)
T ss_pred HHHHHH---CCCCHHHHHHHHHH
Confidence 445554 59999999876543
No 28
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=23.86 E-value=60 Score=18.34 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=8.7
Q ss_pred CCcccchhHHHH
Q 040788 166 VGYVQGMGFLAG 177 (365)
Q Consensus 166 igY~QGm~~ia~ 177 (365)
-||.||+.+..-
T Consensus 3 sgyiqgipdflk 14 (31)
T PF08109_consen 3 SGYIQGIPDFLK 14 (31)
T ss_pred cccccccHHHHH
Confidence 489999985543
No 29
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=21.91 E-value=35 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=18.3
Q ss_pred ChHHHHHHHh-cCCCcchHHHHHHH
Q 040788 74 KPHVVKRRIR-KGIPDCLRGLVWQL 97 (365)
Q Consensus 74 ~~~klk~~~~-~GIP~~~R~~vW~~ 97 (365)
.+++||+.+. .|||+..|..++..
T Consensus 19 ~~k~lkk~~~e~kiP~~~R~~~pll 43 (47)
T TIGR02433 19 GSKKLKKLFIDAKVPPWLRDRIPLL 43 (47)
T ss_pred CCchHHHHHHHcCCCHHHHcCccEE
Confidence 3567888775 79999999876643
No 30
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.82 E-value=1.2e+02 Score=27.41 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=27.2
Q ss_pred HHHHHhCCCCCCCChhHHHHHHhcCccchHHHHHHHHHHHHhhh
Q 040788 303 LIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKK 346 (365)
Q Consensus 303 i~~~l~~~~~~~~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~ 346 (365)
+++.|..+-...+|.|.|.+.|-.+. .+++++.+++++..+.
T Consensus 192 vve~lnk~~~l~V~td~L~keAe~i~--~~lekl~eq~~~~~~~ 233 (244)
T COG1938 192 VVEALNKMLGLNVDTDKLEKEAEEIE--EQLEKLAEQLEKEEER 233 (244)
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 45555555555678888988885554 4666777666665543
Done!