Query 040788
Match_columns 365
No_of_seqs 277 out of 1974
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 19:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.8E-60 6.1E-65 447.4 19.9 291 52-351 4-299 (310)
2 3qye_A TBC1 domain family memb 100.0 3.4E-58 1.2E-62 435.8 30.0 291 52-349 29-329 (331)
3 2qq8_A TBC1 domain family memb 100.0 1.4E-57 4.7E-62 431.5 24.6 280 50-342 18-323 (334)
4 2qfz_A TBC1 domain family memb 100.0 4.3E-53 1.5E-57 402.9 21.8 269 45-329 18-334 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 1.5E-52 5.1E-57 404.8 24.3 266 50-329 5-380 (396)
6 4hl4_A TBC1 domain family memb 100.0 2.6E-50 8.7E-55 375.0 18.4 265 47-328 14-286 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.1E-39 3.7E-44 301.2 11.6 246 54-328 27-283 (294)
8 1erd_A Pheromone ER-2; NMR {Eu 32.1 19 0.00066 20.7 1.3 17 162-178 13-29 (40)
9 3kev_A Galieria sulfuraria DCU 27.4 63 0.0021 27.1 4.3 59 211-278 76-134 (199)
10 1dxs_A P53-like transcription 25.0 59 0.002 22.8 3.0 25 78-102 41-65 (80)
11 3iot_A Maltose-binding protein 24.2 32 0.0011 32.3 2.1 12 75-86 44-55 (449)
12 3tdu_A DCN1-like protein 1; E2 20.6 75 0.0026 26.6 3.4 33 247-279 101-133 (200)
No 1
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-60 Score=447.38 Aligned_cols=291 Identities=36% Similarity=0.699 Sum_probs=258.5
Q ss_pred HHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhh
Q 040788 52 RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDI 131 (365)
Q Consensus 52 r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv 131 (365)
..++|.+|++ +|+.+...+++++++++++|||+.+|+.||+.|+|+.... ...+.|..+... .++...+|++|+
T Consensus 4 ~~~~W~~~~~----~w~~~~~~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~-~~~~~Y~~l~~~-~~~~~~~I~~Dv 77 (310)
T 3hzj_A 4 ILYSWGELLG----KWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQ-AMLDRYRILITK-DSAQESVITRDI 77 (310)
T ss_dssp --CCHHHHHH----HHHTSTTSCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCH-HHHHHHHHHTTS-CCTTHHHHHHHH
T ss_pred HHHHHHHHHH----HHhhhcccCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcch-hHHHHHHHHHhc-cCCcHHHHHHHH
Confidence 3579999998 7888777788999999999999999999999999975321 234678888654 345678999999
Q ss_pred hhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCC
Q 040788 132 SRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVG 211 (365)
Q Consensus 132 ~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~ 211 (365)
+||+|++++|..+++.+++.|+|||.||+.+||++|||||||+|||+||++++|++|||||+++|.. +.++++|.++
T Consensus 78 ~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~---~~~~~~~~~~ 154 (310)
T 3hzj_A 78 HRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD---YGLRDLYRNN 154 (310)
T ss_dssp TTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHT---SCGGGGTHHH
T ss_pred HhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhc---cccccccccc
Confidence 9999999999987778999999999999999999999999999999999999999999999999987 3478999999
Q ss_pred cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q 040788 212 LPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYC 291 (365)
Q Consensus 212 ~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~ 291 (365)
++++...+..++.+++.++|+|++||.+.|+++.+|+.+||+|+|++.+|++.++||||+|+++|..+++++|+|++..+
T Consensus 155 ~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~ 234 (310)
T 3hzj_A 155 FEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTS 234 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCHHHHHHHHh-CCCCC---CCChhHHHHHHhcCccc-hHHHHHHHHHHHHhhhhhhhh
Q 040788 292 HDDLIKLPFEKLIHALR-NFPED---AMDPDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQSA 351 (365)
Q Consensus 292 ~~~Ll~~~~~~i~~~l~-~~~~~---~~d~~~li~~a~~l~~~-~~l~~l~~~~~~~~~~~~~~~ 351 (365)
+++|+++++++++.+|+ ++|.. ..|++.+++.|++++++ +++.+++++|..+..++.++.
T Consensus 235 ~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~~~~~~l~~~~~ey~~~~~~~~~~~ 299 (310)
T 3hzj_A 235 KEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQE 299 (310)
T ss_dssp HHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999997 45643 24789999999999998 789999999999877765443
No 2
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.4e-58 Score=435.78 Aligned_cols=291 Identities=29% Similarity=0.587 Sum_probs=258.9
Q ss_pred HHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhh-------cCcchHHHHhhhccCCCh
Q 040788 52 RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLL-------MNPGVYEQLLIYETSTSE 124 (365)
Q Consensus 52 r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~-------~~~~~y~~l~~~~~~~~~ 124 (365)
+.++|.++++..|. .......+++++++++|||+.+|+.||+.|+|+..... .+.+.|..+.... ....
T Consensus 29 ~~~~W~~~l~~~~~---~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~-~~~~ 104 (331)
T 3qye_A 29 VTTVWEKMLSTPGR---SKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQL-TSQQ 104 (331)
T ss_dssp HHHHHHHHHTCTTG---GGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSC-CTTH
T ss_pred HHHHHHHHhccCCC---CcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhc-CCch
Confidence 56899999974332 22344679999999999999999999999999764322 2457899987643 4556
Q ss_pred hHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCC
Q 040788 125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPM 204 (365)
Q Consensus 125 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l 204 (365)
.+|++|++||+|++++|..+.+.+++.|+|||.+|+.+||++|||||||+|||+|+++++|++|||||+++|... .+
T Consensus 105 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~---~~ 181 (331)
T 3qye_A 105 HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDM---GL 181 (331)
T ss_dssp HHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTT---CG
T ss_pred hHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhc---Cc
Confidence 899999999999999999887889999999999999999999999999999999999999999999999999873 47
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHH
Q 040788 205 EGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVG 284 (365)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~ 284 (365)
+++|.+++++++..+..++.+++.++|+|++||.+.|+.+.+|+.+||+|+|++.+|++.++||||+|+++|..+++++|
T Consensus 182 ~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~va 261 (331)
T 3qye_A 182 RKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVA 261 (331)
T ss_dssp GGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhCC-CHHHHHHHHhCCCCCC--CChhHHHHHHhcCccchHHHHHHHHHHHHhhhhhh
Q 040788 285 LALLTYCHDDLIKL-PFEKLIHALRNFPEDA--MDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQ 349 (365)
Q Consensus 285 lail~~~~~~Ll~~-~~~~i~~~l~~~~~~~--~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~~~~ 349 (365)
+||+..+++.|+++ ++++++.+|++.++.. .|++.+++.|+++++++++.+++++|..+.+....
T Consensus 262 laiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~s~~l~~~e~ey~~l~~~~~~ 329 (331)
T 3qye_A 262 LSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEELID 329 (331)
T ss_dssp HHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999997 8999999999854432 47889999999999999999999999998776543
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-57 Score=431.49 Aligned_cols=280 Identities=33% Similarity=0.606 Sum_probs=245.0
Q ss_pred HHHHHHHH-HHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhc---------
Q 040788 50 ERRVRKWR-KMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYE--------- 119 (365)
Q Consensus 50 ~~r~~kW~-~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~--------- 119 (365)
.+|..+|. +|+. +|+.+. ..+++++++++|||+.+|+.||+.++|+. ...+++.|+.++...
T Consensus 18 ~~~~~~W~~~il~----~w~~~~--~~~~lr~l~~~GIP~~lR~~vW~~llg~~--~~~~~~~y~~ll~~~~~~~~~~~~ 89 (334)
T 2qq8_A 18 GNAVLTWNNEILP----NWETMW--CSRKVRDLWWQGIPPSVRGKVWSLAIGNE--LNITHELFDICLARAKERWRSLST 89 (334)
T ss_dssp SCHHHHHHHTTGG----GCC--C--CCHHHHHHHHTCCCHHHHHHHHHHHHCCT--TCCCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHH----hHHhcc--ChHHHHHHHHCCCCHHHHHHHHHHHhCCc--cccCHHHHHHHHHHHHHHHHHhcc
Confidence 46788998 5886 787653 56899999999999999999999999974 245567777665321
Q ss_pred ----------------cCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc
Q 040788 120 ----------------TSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM 183 (365)
Q Consensus 120 ----------------~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~ 183 (365)
......+|++||.||||++++|+. .+++++.|+|||.||+.+||++|||||||+|||+||+++
T Consensus 90 ~~~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~ 168 (334)
T 2qq8_A 90 GGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL 168 (334)
T ss_dssp -----------------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS
T ss_pred ccccCcccccccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC
Confidence 022346899999999999999986 457899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChH
Q 040788 184 SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFH 263 (365)
Q Consensus 184 ~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~ 263 (365)
+|++|||||+++|+... ..++|..+.+++...+..++.+++..+|+|++||.+.|+++.+|+.+||+|+|++++|++
T Consensus 169 ~E~~aF~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPC---QMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp CHHHHHHHHHHHHTSHH---HHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred CHHHHHHHHHHHHHhhh---HHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 99999999999998732 356888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCCCCCCChhHHHHHHhcCccchHHHHHHHHHHH
Q 040788 264 LALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEK 342 (365)
Q Consensus 264 ~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~~~l~~l~~~~~~ 342 (365)
.++||||+|+++|..+++++|+||+..+++.|+++++++++.+|+++|.. +|++.++..|.+++++.+.++.++.+..
T Consensus 246 ~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~-~d~~~l~~~a~~l~~~~~~k~~~~~~~~ 323 (334)
T 2qq8_A 246 LACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED-LPAEELFASIATIQMQSRNKKWAQVLTA 323 (334)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT-CCHHHHHHHHHHCCCEETTEEHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc-CCHHHHHHHHHHccCcHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 7999999999999997543344444433
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=4.3e-53 Score=402.87 Aligned_cols=269 Identities=23% Similarity=0.389 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCH--------hHhhcCcchHHHHh
Q 040788 45 QFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSR--------DLLLMNPGVYEQLL 116 (365)
Q Consensus 45 ~~~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~--------~~~~~~~~~y~~l~ 116 (365)
..++|..|.++|.++++. |. ...+++++++++|||+.+|+.||+.++|+. .....+++.|..+.
T Consensus 18 ~~~~e~~r~~kw~~~l~~----~~----~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~ 89 (345)
T 2qfz_A 18 GSEREASRLDKFKQLLAG----PN----TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFI 89 (345)
T ss_dssp ------CHHHHHHHHHHC----SB----CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHcC----CC----CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999983 32 346899999999999999999999999963 11223456788887
Q ss_pred hhcc--------CCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----
Q 040788 117 IYET--------STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM----- 183 (365)
Q Consensus 117 ~~~~--------~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~----- 183 (365)
.... .....+|++||.||+|+ ++|+.+ .+++.|+|||.+||.+||++|||||||+|||+|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~ 166 (345)
T 2qfz_A 90 EHYYDSRNDEVHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYI 166 (345)
T ss_dssp HHC--------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGC
T ss_pred HHhhcCCCccchHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhc
Confidence 5421 12347899999999999 999864 5789999999999999999999999999999998754
Q ss_pred --------------------ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Q 040788 184 --------------------SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMIN 243 (365)
Q Consensus 184 --------------------~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~ 243 (365)
+|++|||||+++|+. ++++|..+++++...+..++.+++..+|+|++||.+.|++
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~-----~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~ 241 (345)
T 2qfz_A 167 EAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG-----IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVR 241 (345)
T ss_dssp C-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHT-----SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCC
T ss_pred ccccccccchhhhhhhhhhhHHHHHHHHHHHHHHc-----cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 289999999999998 4788999999999999999999999999999999999999
Q ss_pred chhchHHHHHHhccccCChHHHHHHHHHHHhcChH---HHHHHHHHHHHHhHHHhhC-CCHHHHHHHHhCCCCCC---CC
Q 040788 244 PSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVK---IVFKVGLALLTYCHDDLIK-LPFEKLIHALRNFPEDA---MD 316 (365)
Q Consensus 244 ~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~---~l~~~~lail~~~~~~Ll~-~~~~~i~~~l~~~~~~~---~d 316 (365)
+.+|+++||+|+|++++|++.++||||+|+++|.. +++++|+|++..++++|++ .++++++.+|+++|... .|
T Consensus 242 ~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~d 321 (345)
T 2qfz_A 242 YLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDED 321 (345)
T ss_dssp HHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHH
T ss_pred hhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhH
Confidence 99999999999999999999999999999999976 7899999999999999995 79999999999999864 36
Q ss_pred hhHHHHHHhcCcc
Q 040788 317 PDKLLPVAYSIKV 329 (365)
Q Consensus 317 ~~~li~~a~~l~~ 329 (365)
++.|++.|+.++.
T Consensus 322 i~~ll~~A~~l~~ 334 (345)
T 2qfz_A 322 ISLLLAEAYRLKF 334 (345)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998764
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.5e-52 Score=404.85 Aligned_cols=266 Identities=26% Similarity=0.385 Sum_probs=234.1
Q ss_pred HHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHh--------HhhcCcchHHHHhhhcc-
Q 040788 50 ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRD--------LLLMNPGVYEQLLIYET- 120 (365)
Q Consensus 50 ~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~--------~~~~~~~~y~~l~~~~~- 120 (365)
.+|.++|.++++. +. ....++|++++++|||+.+|+.||+.|+|+.. ....+++.|..++....
T Consensus 5 ~~R~~kw~~lL~~----~~---~~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~ 77 (396)
T 1fkm_A 5 IQRISKFDNILKD----KT---IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFS 77 (396)
T ss_dssp HHHHHHHHHHHSS----CS---BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcC----CC---CCCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5689999999984 32 13568999999999999999999999999732 11234567888875421
Q ss_pred ------CCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----------
Q 040788 121 ------STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM----------- 183 (365)
Q Consensus 121 ------~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~----------- 183 (365)
.....+|++||.||+|++++|+.+ .+++.|+|||.+|+.+||++|||||||+|||+||+++
T Consensus 78 ~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 78 DQHSRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp SSCSTHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ccCcccHHHHHHHHHHhhhhCCCcccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 123468999999999999999864 6899999999999999999999999999999998753
Q ss_pred -----------C-------hhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCch
Q 040788 184 -----------S-------EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPS 245 (365)
Q Consensus 184 -----------~-------E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~ 245 (365)
+ |++|||||+++|.. +.++|.++++++...+..++.+|+..+|+|++||.+.|+.+.
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~-----~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~ 230 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ-----ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFI 230 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGG-----GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHH-----HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 3 88999999999998 578899999999999999999999999999999999999999
Q ss_pred hchHHHHHHhccccCChHHHHHHHHHHHhcC-------------------------------------------------
Q 040788 246 MYASQWFITVFSYSFPFHLALRIWDVFLFEG------------------------------------------------- 276 (365)
Q Consensus 246 ~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g------------------------------------------------- 276 (365)
+|+++||+|+|+++||++.++||||+||++|
T Consensus 231 ~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 310 (396)
T 1fkm_A 231 QFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPN 310 (396)
T ss_dssp HHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998
Q ss_pred --------------hHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCCCCC---CChhHHHHHHhcCcc
Q 040788 277 --------------VKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDA---MDPDKLLPVAYSIKV 329 (365)
Q Consensus 277 --------------~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~~~~---~d~~~li~~a~~l~~ 329 (365)
..+++++|+|+|..+++.|+++++++++.+|+++|... .|++.++..|+.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~ 380 (396)
T 1fkm_A 311 NAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS 380 (396)
T ss_dssp ------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999753 488999999986653
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.6e-50 Score=375.01 Aligned_cols=265 Identities=16% Similarity=0.254 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcC---CCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCC
Q 040788 47 EREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKG---IPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTS 123 (365)
Q Consensus 47 ~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~G---IP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~ 123 (365)
.++.++.+++.+.++.+..+ -++|+++++.| +|+++|+.||+.|+|+.... .++.|... .....+.
T Consensus 14 ~~~~~k~~~i~~~l~~~~~d--------l~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~--~~~~~~~~-~~~~~~~ 82 (292)
T 4hl4_A 14 AKRKKKVAEIHQALNSDPTD--------VAALRRMAISEGGLLTDEIRRKVWPKLLNVNAND--PPPISGKN-LRQMSKD 82 (292)
T ss_dssp HHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCS--CCSCCCTT-HHHHCTT
T ss_pred chhHHHHHHHHHHHcCCccc--------HHHHHHHHcCCCCCCChhHHHHHHHHHhCCCccc--CCCchhhh-hcccchh
Confidence 34566778899999754332 36899998854 89999999999999986432 23334322 2334667
Q ss_pred hhHHhhhhhhcCCCcccccc--CCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccC
Q 040788 124 ELDIIRDISRTFPSHVFFQQ--RHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVH 201 (365)
Q Consensus 124 ~~~I~~Dv~Rt~~~~~~f~~--~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~ 201 (365)
..+|.+||.||||+++.|.. ..+.+++.|.|||.+|+.+||++|||||||+|||+||++++|++|||||+++++.
T Consensus 83 ~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~--- 159 (292)
T 4hl4_A 83 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTH--- 159 (292)
T ss_dssp HHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHT---
T ss_pred HHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHH---
Confidence 78999999999999998753 2346788999999999999999999999999999999999999999999999997
Q ss_pred CCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCC-hHHHHHHHHHHHhcChHHH
Q 040788 202 APMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFP-FHLALRIWDVFLFEGVKIV 280 (365)
Q Consensus 202 ~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp-~~~~lriwD~~l~~g~~~l 280 (365)
.++++|.++++++...+..++.+++..+|+|++||.+.++. .+|+.+||+|+|++++| ++.++||||+|+++|..++
T Consensus 160 -~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~ 237 (292)
T 4hl4_A 160 -HLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMP 237 (292)
T ss_dssp -TTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHH
T ss_pred -HHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHH
Confidence 36889999999999999999999999999999999999995 69999999999999996 9999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhCC--CHHHHHHHHhCCCCCCCChhHHHHHHhcCc
Q 040788 281 FKVGLALLTYCHDDLIKL--PFEKLIHALRNFPEDAMDPDKLLPVAYSIK 328 (365)
Q Consensus 281 ~~~~lail~~~~~~Ll~~--~~~~i~~~l~~~~~~~~d~~~li~~a~~l~ 328 (365)
+++|+|++..++++|+++ +++.++.+|+++|.. .|++.+++.|..+.
T Consensus 238 ~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~-~d~~~li~~A~~l~ 286 (292)
T 4hl4_A 238 IYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQD-LPYETLISRAGDLF 286 (292)
T ss_dssp HHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Confidence 999999999999999995 788999999999965 79999999998753
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=301.21 Aligned_cols=246 Identities=17% Similarity=0.290 Sum_probs=191.1
Q ss_pred HHHHHHhhccCCCcchhcccChHHHHHHHhcC-CCcchHHHHHHHHhCC--------HhHhhcCcchHHHHhhhccCCCh
Q 040788 54 RKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKG-IPDCLRGLVWQLISGS--------RDLLLMNPGVYEQLLIYETSTSE 124 (365)
Q Consensus 54 ~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~G-IP~~~R~~vW~~ll~~--------~~~~~~~~~~y~~l~~~~~~~~~ 124 (365)
++...+++.+. ...++|++++++| ||+.+|+.||+.|+|. ........+.|..++..
T Consensus 27 ~~~~~ll~~~~--------~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~------ 92 (294)
T 3qwl_A 27 KSLEILLKDDR--------LDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA------ 92 (294)
T ss_dssp HHHHHHTTSSB--------CCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhcCCC--------CCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh------
Confidence 46677886422 2458899999999 9999999999999997 33344456678887754
Q ss_pred hHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHH-hcChhhHHHHHHHHHhcccCCC
Q 040788 125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLL-YMSEEDAFWLMVALLKGAVHAP 203 (365)
Q Consensus 125 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~-~~~E~~aF~~l~~l~~~~~~~~ 203 (365)
.++.+++.+..|-+..|-.....+.. .+..++ ..+++ .++|||..||++++. +.+|++|||||+++|++
T Consensus 93 ~~~~r~I~~~tP~~~vfl~~~~~~~~---~l~~~~-~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~----- 162 (294)
T 3qwl_A 93 LKVVRFVSDATPQAEVYLRMYQLESG---KLPRSP-SFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ----- 162 (294)
T ss_dssp HHHTTSCCTTSCHHHHHHHHHHHHHT---CCCSST-TSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-----
T ss_pred hhhhhhhhccCchHHHHHHHHHcccc---cccccc-cCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----
Confidence 22334444433332222211000000 001111 11233 356999999998875 45899999999999998
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHH
Q 040788 204 MEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKV 283 (365)
Q Consensus 204 l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~ 283 (365)
+.++|.+++++++.. ++.+++..+|+|++||.+.|+.+.+++.+||+|+|++++|++.++||||+++++|.++++++
T Consensus 163 l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~v 239 (294)
T 3qwl_A 163 LNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFV 239 (294)
T ss_dssp HHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHH
T ss_pred HHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHH
Confidence 578999999998865 48999999999999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhCCCH-HHHHHHHhCCCCCCCChhHHHHHHhcCc
Q 040788 284 GLALLTYCHDDLIKLPF-EKLIHALRNFPEDAMDPDKLLPVAYSIK 328 (365)
Q Consensus 284 ~lail~~~~~~Ll~~~~-~~i~~~l~~~~~~~~d~~~li~~a~~l~ 328 (365)
|+|+|+.+++.|+++++ ++++.+|+++|.. |++.+++.|+.+.
T Consensus 240 alAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~--di~~ll~~A~~l~ 283 (294)
T 3qwl_A 240 AVEILLTFKIKVMALNSAEKITKFLENIPQD--SSDAIVSKAIDLW 283 (294)
T ss_dssp HHHHHHHTHHHHHHCCSHHHHHHHHTTCCST--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHcCCcc--cHHHHHHHHHHHH
Confidence 99999999999999876 8999999999975 7999999998764
No 8
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=32.08 E-value=19 Score=20.67 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=11.8
Q ss_pred hcCCCCcccchhHHHHH
Q 040788 162 YDRDVGYVQGMGFLAGL 178 (365)
Q Consensus 162 ~~p~igY~QGm~~ia~~ 178 (365)
.+.-.|||||--+...+
T Consensus 13 ehtmcgycqgplymtci 29 (40)
T 1erd_A 13 EHTMCGYCQGPLYMTCI 29 (40)
T ss_dssp CGGGGGGSCHHHHHHHH
T ss_pred cccccccccCCeeEEEE
Confidence 45678999996655443
No 9
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=27.44 E-value=63 Score=27.10 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChH
Q 040788 211 GLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVK 278 (365)
Q Consensus 211 ~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~ 278 (365)
+...++..+..+..-+ .+|..++.+- .|++.+-..-=.+.+++++++..|+++|....+
T Consensus 76 si~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~re~gqk~L~~e~Ai~~W~lll~~~~~ 134 (199)
T 3kev_A 76 SLEKLKRKLSSLRKEI--EDPSKFRAFY-------QFVFQYSKEPSQRSLPAETAMALWDVLLRGRFS 134 (199)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSBCHHHHHHHHHHHHTTTCT
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCCCCHHHHHHHHHHHhCCccH
Confidence 4444444444433333 3444444433 255555554455789999999999999965443
No 10
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=25.00 E-value=59 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHhcCCCcchHHHHHHHHhCCH
Q 040788 78 VKRRIRKGIPDCLRGLVWQLISGSR 102 (365)
Q Consensus 78 lk~~~~~GIP~~~R~~vW~~ll~~~ 102 (365)
+.-+..-.||..+|..+|+-+....
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~~ 65 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDLK 65 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC-
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHhc
Confidence 4455667899999999999987543
No 11
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=24.23 E-value=32 Score=32.32 Aligned_cols=12 Identities=8% Similarity=-0.033 Sum_probs=7.2
Q ss_pred hHHHHHHHhcCC
Q 040788 75 PHVVKRRIRKGI 86 (365)
Q Consensus 75 ~~klk~~~~~GI 86 (365)
.+++...+..|=
T Consensus 44 ~~kl~~~~~sg~ 55 (449)
T 3iot_A 44 EEKFPQVAATGD 55 (449)
T ss_dssp HHHHHHHGGGTC
T ss_pred HHHHHHHhhCCC
Confidence 356666666554
No 12
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=20.61 E-value=75 Score=26.62 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=24.8
Q ss_pred chHHHHHHhccccCChHHHHHHHHHHHhcChHH
Q 040788 247 YASQWFITVFSYSFPFHLALRIWDVFLFEGVKI 279 (365)
Q Consensus 247 ~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~ 279 (365)
|++.+...-=.+.+++++++..|+++|....+.
T Consensus 101 ftF~~~r~~gqk~L~~e~Ai~~W~lll~~~~~~ 133 (200)
T 3tdu_A 101 FTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKF 133 (200)
T ss_dssp HHHHHHSCTTCSSEEHHHHHHHHHHHSTTSCTT
T ss_pred HHHHHHcCcCcCcCCHHHHHHHHHHHcCCCchH
Confidence 555555544457899999999999999876543
Done!