Query 040790
Match_columns 231
No_of_seqs 113 out of 219
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y39_A Nickel and cobalt resis 97.4 0.0032 1.1E-07 49.4 11.7 86 123-211 20-111 (118)
2 3itf_A Periplasmic adaptor pro 96.3 0.018 6.1E-07 46.5 8.3 88 123-211 45-133 (145)
3 3o39_A Periplasmic protein rel 94.7 0.04 1.4E-06 42.3 4.9 82 123-206 17-100 (108)
4 3oeo_A Spheroplast protein Y; 93.9 0.025 8.5E-07 45.1 2.2 86 123-211 33-121 (138)
5 3lay_A Zinc resistance-associa 91.7 1.6 5.3E-05 36.1 10.3 72 122-193 66-140 (175)
6 2ke4_A CDC42-interacting prote 65.8 33 0.0011 25.4 7.9 44 118-162 5-53 (98)
7 2jrm_A Ribosome modulation fac 47.7 4.3 0.00015 28.3 0.2 16 76-92 33-48 (65)
8 3v22_V Ribosome modulation fac 41.5 3.4 0.00011 28.6 -1.1 19 79-97 35-53 (61)
9 1yke_B RNA polymerase II holoe 27.6 1.9E+02 0.0067 22.8 7.1 103 38-152 6-114 (151)
10 1ykh_B RNA polymerase II holoe 25.1 1.1E+02 0.0037 23.6 5.0 104 38-152 6-114 (132)
11 1zbd_B Rabphilin-3A; G protein 24.8 88 0.003 24.2 4.4 43 117-159 3-45 (134)
12 2zzd_B Thiocyanate hydrolase s 23.8 1.5E+02 0.0052 23.8 5.7 37 8-52 107-143 (157)
13 3l9k_W Dynein intermediate cha 22.8 1.1E+02 0.0037 18.9 3.6 17 133-149 17-33 (38)
14 1bg1_A Protein (transcription 20.2 5.9E+02 0.02 24.6 10.0 83 124-207 11-109 (596)
No 1
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.35 E-value=0.0032 Score=49.40 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcC---CCchhHHHHHHHHHHHHHHHhHHHHHH---HHHHhhh
Q 040790 123 DLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVG---DCSASVDEKIRLLVSIVQKADDLRLRT---VRRVVDL 196 (231)
Q Consensus 123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g---~~~~~~~~kl~~L~~~l~~AD~LR~~T---L~~~~~i 196 (231)
+||++|-..|+.++..-.....+|..+|...-..+++.+. +-+..+..++..... ..-.|+..| +-.|..|
T Consensus 20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~---~mG~LQkeTi~HvfeMR~V 96 (118)
T 2y39_A 20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVER---AAGDLQRATLVHVFEMRAG 96 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence 5999999999999999999999999999999999998862 123566666666655 344588889 7777899
Q ss_pred cCHHHHHHHHHHHHH
Q 040790 197 LTTQQAVEFLIAAAE 211 (231)
Q Consensus 197 Ltp~Qaa~fL~A~~e 211 (231)
|||-|+..|=-.+.+
T Consensus 97 LtPeQ~~~fd~~vv~ 111 (118)
T 2y39_A 97 LKPEHRPAYDRVLID 111 (118)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999766554
No 2
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=96.25 E-value=0.018 Score=46.50 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHHH
Q 040790 123 DLSPSQFRRVSELQCETVKEENAIT-DELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQ 201 (231)
Q Consensus 123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~g~~~~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~Q 201 (231)
+||++|..+|..|....+.+...++ +.+..++.-+... ....+.+.+.++.+...-.+.--.|.++-.+|..||||-|
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad-~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQ 123 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAE-NFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQ 123 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 4999999999999988887655442 2233333211111 1112446677777777777777789999999999999999
Q ss_pred HHHHHHHHHH
Q 040790 202 AVEFLIAAAE 211 (231)
Q Consensus 202 aa~fL~A~~e 211 (231)
-+.|-.-..+
T Consensus 124 k~ql~e~~~~ 133 (145)
T 3itf_A 124 QAVLNEKHQQ 133 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998664433
No 3
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=94.70 E-value=0.04 Score=42.34 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhcCCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHH
Q 040790 123 DLSPSQFRRVSELQCETVKEENAIT-DELSEWQDGASELVGDCS-ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQ 200 (231)
Q Consensus 123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~g~~~-~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~ 200 (231)
+||++|...|-.|....+.+-+..+ .....++.-+.. +..+ ..+..-++.+...-.+.---|.++=.+|..||||-
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~a--d~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPE 94 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIAS--DTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPE 94 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSS--SSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4999999999999887766533221 222333321111 1112 33555556555555555567788999999999999
Q ss_pred HHHHHH
Q 040790 201 QAVEFL 206 (231)
Q Consensus 201 Qaa~fL 206 (231)
|-+.|-
T Consensus 95 Qk~q~~ 100 (108)
T 3o39_A 95 QKKQFN 100 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 4
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=93.87 E-value=0.025 Score=45.06 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcCCC---chhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCH
Q 040790 123 DLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDC---SASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTT 199 (231)
Q Consensus 123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g~~---~~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp 199 (231)
+||++|..+|..|....+..-... +....+.+.+.+.++ ...+...++.+...-.+.--.|.++..+|..||||
T Consensus 33 ~LT~eQ~~qir~i~~~~r~~~~~~---~~~~r~~l~~Li~a~~fDeaav~al~~~~~~~~~e~~~~~~~~~~~~~~vLTP 109 (138)
T 3oeo_A 33 NLTDAQKQQIREIMKGQRDQMKRP---PLEERRAMHDIITSDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTP 109 (138)
T ss_dssp CCCTTHHHHHHHHHHHHSSSSCCC---CTTHHHHHHHHHTCSSCCHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 499999999999988776543211 111122222222221 23456666666666777777889999999999999
Q ss_pred HHHHHHHHHHHH
Q 040790 200 QQAVEFLIAAAE 211 (231)
Q Consensus 200 ~Qaa~fL~A~~e 211 (231)
-|-+.|---..+
T Consensus 110 EQr~q~~~~~~k 121 (138)
T 3oeo_A 110 EQKKQFNANFEK 121 (138)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH
Confidence 999998765544
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=91.75 E-value=1.6 Score=36.11 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcCCCc---hhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040790 122 GDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCS---ASVDEKIRLLVSIVQKADDLRLRTVRRV 193 (231)
Q Consensus 122 ~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g~~~---~~~~~kl~~L~~~l~~AD~LR~~TL~~~ 193 (231)
-+||++|..++..|+++.+.+-.+|.+.|...++.+.+.+..++ ..+......+..+=.+-...|.+.-.++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999888888877763222 2344444455555445555566555555
No 6
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=65.80 E-value=33 Score=25.41 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCCCCCCHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 040790 118 TGDLGDLSPSQFR-----RVSELQCETVKEENAITDELSEWQDGASELVG 162 (231)
Q Consensus 118 ~~~l~~Ls~~Ql~-----~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g 162 (231)
..+.+.|.++|.. +|++|+..+.++.++ .+++.+++......+.
T Consensus 5 ~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~ 53 (98)
T 2ke4_A 5 TEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQ 53 (98)
T ss_dssp CSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGG
T ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc
Confidence 4578889998865 588899988888887 7889999999998873
No 7
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=47.69 E-value=4.3 Score=28.34 Aligned_cols=16 Identities=38% Similarity=0.887 Sum_probs=10.9
Q ss_pred chHHHHHHHhcCCchhH
Q 040790 76 SSLERSLHWIAGWRPTT 92 (231)
Q Consensus 76 sp~Er~flWiGG~RPS~ 92 (231)
++--+. .|+||||--.
T Consensus 33 ~~~~r~-~Wl~GWRegr 48 (65)
T 2jrm_A 33 QVDARS-YWLGGWRDAR 48 (65)
T ss_dssp SHHHHH-HHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHH
Confidence 333344 9999999653
No 8
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=41.53 E-value=3.4 Score=28.56 Aligned_cols=19 Identities=26% Similarity=0.793 Sum_probs=12.9
Q ss_pred HHHHHHhcCCchhHHHHHH
Q 040790 79 ERSLHWIAGWRPTTVFHLV 97 (231)
Q Consensus 79 Er~flWiGG~RPS~~l~Ll 97 (231)
+-.-.|+||||--.--+++
T Consensus 35 ~~r~~Wl~GWReg~~d~~~ 53 (61)
T 3v22_V 35 NQRSQWLGGWREAMADRVV 53 (61)
T ss_dssp HHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhhhhhH
Confidence 3457899999976544443
No 9
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.57 E-value=1.9e+02 Score=22.75 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhhhcchhhhccC-CCCc--hHHHHHHHhcCCchhHHHHHHHhhhh---hhhhHHHHH
Q 040790 38 QDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAA-PWAS--SLERSLHWIAGWRPTTVFHLVYTESS---TLFESHIVD 111 (231)
Q Consensus 38 ~~L~~lV~~~~~Hy~~y~~~K~~aA~~DV~~~~s~-~W~s--p~Er~flWiGG~RPS~~l~Ll~s~~~---~~~E~~~~~ 111 (231)
..|+.-|+....+|......-..-|.- ..|+| .... |.... .-| ..|.-....+. .....+|.-
T Consensus 6 TQLQd~ldqLa~~f~nsig~Lq~~app---~~~~~~~~~~~~~~~~~------~~~-~~f~~~~~ela~dli~kakqIe~ 75 (151)
T 1yke_B 6 TQLQICLDQMTEQFCATLNYIDKNHGF---ERLTVNEPQMSDKHATV------VPP-EEFSNTIDELSTDIILKTRQINK 75 (151)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHTTGG---GGCCC------------------CCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc---ccCCCCCCCCCCcCCCC------CCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999888877766443322 22221 1100 00000 011 12221111111 011234434
Q ss_pred HhhccCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040790 112 ILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSE 152 (231)
Q Consensus 112 ~l~g~~~~~l~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~ 152 (231)
+++.+. .++.-.++|+.+|.+|+.+...++..+-+.+.+
T Consensus 76 LIdsLP--g~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~e 114 (151)
T 1yke_B 76 LIDSLP--GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 114 (151)
T ss_dssp HHHHCT--TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 344456899999999999999998877655443
No 10
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.06 E-value=1.1e+02 Score=23.59 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhhhcchhhhc--cCCCCchHHHHHHHhcCCchhHHHHHHHhhhh---hhhhHHHHHH
Q 040790 38 QDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVF--AAPWASSLERSLHWIAGWRPTTVFHLVYTESS---TLFESHIVDI 112 (231)
Q Consensus 38 ~~L~~lV~~~~~Hy~~y~~~K~~aA~~DV~~~~--s~~W~sp~Er~flWiGG~RPS~~l~Ll~s~~~---~~~E~~~~~~ 112 (231)
..|+.-|+....+|......-..-|.-..|.=. .++..++. -.-| ..|.-....+. .....+|.-+
T Consensus 6 TQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~--------~~~~-~~f~~~~~ela~dli~k~kqIe~L 76 (132)
T 1ykh_B 6 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHAT--------VVPP-EEFSNTIDELSTDIILKTRQINKL 76 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCC--------CCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888876543332222100 01111100 0112 12211111111 0112334334
Q ss_pred hhccCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040790 113 LRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSE 152 (231)
Q Consensus 113 l~g~~~~~l~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~ 152 (231)
++.+. .++.-.+.|+.+|.+|+.+...++..+-+.+.+
T Consensus 77 IdsLP--~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 77 IDSLP--GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp HHHST--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 344457899999999999999998877665544
No 11
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.77 E-value=88 Score=24.22 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 040790 117 RTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASE 159 (231)
Q Consensus 117 ~~~~l~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad 159 (231)
..++++.||++....|-+.=++-.+.|..=.+++.++++.+.+
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~ 45 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLET 45 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3568889999888888666555555555555555555554443
No 12
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=23.83 E-value=1.5e+02 Score=23.76 Aligned_cols=37 Identities=8% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHHHHhHH
Q 040790 8 SFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYT 52 (231)
Q Consensus 8 ~~y~~W~~e~~~~l~eLr~al~~~~~~~sd~~L~~lV~~~~~Hy~ 52 (231)
.+|++|+....+.+.+ .+. .+..||..-+..+.+.+.
T Consensus 107 sYYe~WL~ALe~lLve-------kGv-it~~EL~ar~aEv~ar~~ 143 (157)
T 2zzd_B 107 PYYGRWLLTAARILVD-------KQF-VTLTELHNKIVEMRERVA 143 (157)
T ss_dssp CHHHHHHHHHHHHHHH-------TTS-SCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-------cCC-CCHHHHHHHHHHHHHhhh
Confidence 5899999999988876 222 358889888888877664
No 13
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=22.77 E-value=1.1e+02 Score=18.94 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHH
Q 040790 133 SELQCETVKEENAITDE 149 (231)
Q Consensus 133 ~~Lq~~t~~~E~aLs~~ 149 (231)
.=+.++++..|+||++.
T Consensus 17 ~F~~rsskviERAL~e~ 33 (38)
T 3l9k_W 17 RFVVRAGRVIERALSEN 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccc
Confidence 44778999999999864
No 14
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=20.16 E-value=5.9e+02 Score=24.58 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhc------CCC-------chhHHHHHHHHHHHHHHHhHHHH
Q 040790 124 LSPSQFR---RVSELQCETVKEENAITDELSEWQDGASELV------GDC-------SASVDEKIRLLVSIVQKADDLRL 187 (231)
Q Consensus 124 Ls~~Ql~---~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~------g~~-------~~~~~~kl~~L~~~l~~AD~LR~ 187 (231)
.+++|.. ++.+|+.+++..|..| +.|+.+|+.+.=.- ... ...+..+...|...+..=|..|.
T Consensus 11 ~~~k~~ei~~~v~~lr~~~q~~e~~i-k~Le~~Qe~f~~~yk~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~R~ 89 (596)
T 1bg1_A 11 VTEKQQMLEQHLQDVRKRVQDLEQKM-KVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRR 89 (596)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCC---------CCCTTHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443 6888888888888876 35777777654221 000 01122344456777777778888
Q ss_pred HHHHHHhhhcCHHHHHHHHH
Q 040790 188 RTVRRVVDLLTTQQAVEFLI 207 (231)
Q Consensus 188 ~TL~~~~~iLtp~Qaa~fL~ 207 (231)
..+.++.+++...+...-.+
T Consensus 90 e~~~k~~~~l~~~~~lq~~l 109 (596)
T 1bg1_A 90 SIVSELAGLLSAMEYVQKTL 109 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888777666555544443
Done!