Query 040790
Match_columns 231
No_of_seqs 113 out of 219
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 19:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma1 a.5.3.1 (A:1-75) Super 47.6 6.2 0.00045 25.7 2.8 21 119-139 3-23 (75)
2 d1wgwa_ a.24.13.1 (A:) Signal 36.1 5.2 0.00038 28.0 0.9 46 115-160 1-46 (99)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 27.6 56 0.0041 23.3 5.7 103 38-152 5-113 (129)
4 d1b33n_ d.30.1.1 (N:) Allophyc 24.6 20 0.0014 23.1 2.2 13 10-22 33-45 (67)
5 d1k78a1 a.4.1.5 (A:19-81) Pax- 21.7 46 0.0034 21.0 3.7 24 183-206 17-40 (63)
6 d1uuja_ a.221.1.1 (A:) Lissenc 21.0 37 0.0027 22.5 3.1 19 196-214 1-19 (76)
7 d1h75a_ c.47.1.1 (A:) Glutared 17.1 15 0.0011 23.3 0.3 21 64-93 49-69 (76)
8 d1r7ha_ c.47.1.1 (A:) Glutared 17.1 20 0.0015 22.3 1.0 14 84-97 60-73 (74)
9 d1a0pa2 d.163.1.1 (A:111-292) 16.9 14 0.001 26.2 0.1 20 82-101 31-50 (182)
10 d1uz3a1 a.283.1.1 (A:13-102) E 15.8 86 0.0062 21.3 4.1 30 16-50 34-63 (90)
No 1
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.60 E-value=6.2 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHHHhHHH
Q 040790 119 GDLGDLSPSQFRRVSELQCET 139 (231)
Q Consensus 119 ~~l~~Ls~~Ql~~i~~Lq~~t 139 (231)
|.+++||++|...|.+|+..+
T Consensus 3 g~~gelt~~q~~~l~elr~~l 23 (75)
T d1olma1 3 GRVGDLSPRQKEALAKFRENV 23 (75)
T ss_dssp SBTTBCCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 578999999999999998664
No 2
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.11 E-value=5.2 Score=28.00 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=40.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 040790 115 GLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASEL 160 (231)
Q Consensus 115 g~~~~~l~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~ 160 (231)
|..+++..+|+..-...+..|+.+...-|..|.+-+.+++.++-++
T Consensus 1 ~~~~~~~a~L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALLeA 46 (99)
T d1wgwa_ 1 GSSGSSGADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEA 46 (99)
T ss_dssp CCCSSSCSHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCcchhhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3456777889998888999999999999999999999999999876
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.58 E-value=56 Score=23.33 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=52.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhhhhcchhhhccCCCCc------hHHHHHHHhcCCchhHHHHHHHhhhhhhhhHHHHH
Q 040790 38 QDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWAS------SLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVD 111 (231)
Q Consensus 38 ~~L~~lV~~~~~Hy~~y~~~K~~aA~~DV~~~~s~~W~s------p~Er~flWiGG~RPS~~l~Ll~s~~~~~~E~~~~~ 111 (231)
..|+.-|+....||-+....-..-+.-..|.-..|.=.. |.|. |- -.|.++-+.|. ....+|.-
T Consensus 5 TQLQd~lnqla~~f~nsig~L~~~a~~~~~~~~~~~~~~~~~~~~~~e~-f~----~~~~elA~dii-----~kakqId~ 74 (129)
T d1ykhb1 5 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEE-FS----NTIDELSTDII-----LKTRQINK 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHH-HH----HHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCcccCCCCCCCCCHHH-HH----HHHHHHHHHHH-----HHHhhHHH
Confidence 468888999999998888876543321111111000000 0010 00 01111222211 12334444
Q ss_pred HhhccCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040790 112 ILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSE 152 (231)
Q Consensus 112 ~l~g~~~~~l~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~ 152 (231)
+++.+. .++.=.+.|+.+|..|+.+.+.+|..+.+.+.+
T Consensus 75 LI~sLP--~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e 113 (129)
T d1ykhb1 75 LIDSLP--GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 113 (129)
T ss_dssp HHHHST--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 334446799999999999999998877655544
No 4
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.58 E-value=20 Score=23.08 Aligned_cols=13 Identities=23% Similarity=0.902 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 040790 10 YSTWFEQLNQLVQ 22 (231)
Q Consensus 10 y~~W~~e~~~~l~ 22 (231)
|+.|+.||++.+.
T Consensus 33 y~nWf~EQQrI~K 45 (67)
T d1b33n_ 33 YENWFREQQRIQK 45 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8999999998664
No 5
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.74 E-value=46 Score=21.04 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHH
Q 040790 183 DDLRLRTVRRVVDLLTTQQAVEFL 206 (231)
Q Consensus 183 D~LR~~TL~~~~~iLtp~Qaa~fL 206 (231)
.+||.+.+.-+.+-++++|+|+=|
T Consensus 17 ~DLR~Riv~~~~~G~s~r~aA~rf 40 (63)
T d1k78a1 17 DVVRQRIVELAHQGVRPCDISRQL 40 (63)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHh
Confidence 479999999888999999999844
No 6
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.05 E-value=37 Score=22.45 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.2
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 040790 196 LLTTQQAVEFLIAAAELQF 214 (231)
Q Consensus 196 iLtp~Qaa~fL~A~~e~~~ 214 (231)
|||++|+.+-=-|+.+|..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6899999998888888874
No 7
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=17.09 E-value=15 Score=23.30 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=14.1
Q ss_pred cchhhhccCCCCchHHHHHHHhcCCchhHH
Q 040790 64 RDVFNVFAAPWASSLERSLHWIAGWRPTTV 93 (231)
Q Consensus 64 ~DV~~~~s~~W~sp~Er~flWiGG~RPS~~ 93 (231)
.-|+.++-+. -+||||||-.+
T Consensus 49 ~tvP~i~i~~---------~~i~Gf~~d~i 69 (76)
T d1h75a_ 49 RQLPVVIAGD---------LSWSGFRPDMI 69 (76)
T ss_dssp CSSCEEEETT---------EEEESCCHHHH
T ss_pred CCCCEEEECC---------EEEECCCHHHH
Confidence 3466666443 36899999865
No 8
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=17.07 E-value=20 Score=22.34 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=10.5
Q ss_pred HhcCCchhHHHHHH
Q 040790 84 WIAGWRPTTVFHLV 97 (231)
Q Consensus 84 WiGG~RPS~~l~Ll 97 (231)
+||||+|-.+=+|+
T Consensus 60 ~igGf~~d~l~~L~ 73 (74)
T d1r7ha_ 60 HWSGFRPERIKQLQ 73 (74)
T ss_dssp EEESCCHHHHHHHH
T ss_pred EEeCCCHhHHHHhh
Confidence 68999998765543
No 9
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=16.90 E-value=14 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.5
Q ss_pred HHHhcCCchhHHHHHHHhhh
Q 040790 82 LHWIAGWRPTTVFHLVYTES 101 (231)
Q Consensus 82 flWiGG~RPS~~l~Ll~s~~ 101 (231)
|+|..|+||+++..|-....
T Consensus 31 l~~~tG~R~~ei~~L~~~~i 50 (182)
T d1a0pa2 31 VLYATGLRVSELVGLTMSDI 50 (182)
T ss_dssp HHHHHCCCHHHHTTCBGGGE
T ss_pred HHHHhCCccCCcccchhhhh
Confidence 67889999999999876543
No 10
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.83 E-value=86 Score=21.25 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHhHHHHHHHHHHh
Q 040790 16 QLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTH 50 (231)
Q Consensus 16 e~~~~l~eLr~al~~~~~~~sd~~L~~lV~~~~~H 50 (231)
+....+.+||..++ .|+++.+..+.++.+.
T Consensus 34 eke~lLt~LR~~L~-----IS~eeHr~elrr~~~D 63 (90)
T d1uz3a1 34 EKKDLLGELSKVLS-----ISTERHRAEVRRAVND 63 (90)
T ss_dssp HHHHHHHHHHHHTT-----CCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-----CCcHHHHHHHHHhccH
Confidence 56778999999997 3688888888887764
Done!