Citrus Sinensis ID: 040794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGHDHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDNESMQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHccHHHccccccccccccccccccccccccccccccccccEEEEEEEccccccccHccccccccccccccccccccccccccccccccccccccEEEEccccEEEccccEEEEcccccccHHHHHHHHHccccccccccccccccccccHHccccEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHcHHcccHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MADPYSNFFSGLlkfnnspnqnyqhypasqqqhfaqtntfafnqnqshhpyyfqyqssppspplrealpllslsprrheeeaeeeEEEEEEHHQHSCNIAEAAAAMdvdknkgklveesnlffsstsstataalhhedddetTAVTVALHiglpspsasEMASLLSssseisghdhngdhggddssagypfnrlnkgqywiptpsqiligptqfscpvccktfnrynnmqmhmwghgsqyrkgpeslrgtqptgmlrlpcyccapgcrnnidhprakplkdfRTLQTHykrkhgikpfmcrkcgkafavrgdwrthekncgklwycicgsdfkhkrSLKDHIKAFgnghaaygidgfeeedepaseveqdnesmq
Flexible Loop (DISEMBL)
MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGHDHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHykrkhgikpfmcrkCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPAseveqdnesmq
Low Complexity Region (SEG)
MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHpyyfqyqssppsppLREALPLLSLSPRRHeeeaeeeeeeeeeHHQHSCNIAEAAAAMDVDKNKGKLVEESNLFFsstsstataaLHHEDDDETTAVTVALHIGLpspsasemasllsssseisghdhngdhggddssAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDNESMQ
Disordered region (IsUnstruct)
********F*GLL*************************TFAFN*****HPYYF********************************************************************************************TVALHI*************************************YPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQ*************TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDG*******************
Disordered Region (DISOPRED)
*ADPYSNFFSGLLKFNNSP*******************TFAFN***********************************************************************************SSTATAALHHEDDDETTAVTVALHIGLPSPSASEMA**************NGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYR****************LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYG**********************
Disordered Region (DISEMBL)
MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPPSPPLREALPLLSLSP*********************CNIAEAAAAMDVDKNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSP*************************GDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFE*****************
Disordered Region (DISPRO)
**DPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPPSPPLREALPLLSL*********************************************************************TAVTVALHIGLPS*************************************RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYG**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGHDHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDNESMQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.568	0.702	0.644	1e-79
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.373	0.280	0.388	2e-22
Q943I6	522	Zinc finger protein STOP1	no	no	0.517	0.371	0.326	5e-22
Q2QX40	465	Zinc finger protein STAR3	no	no	0.378	0.305	0.370	5e-18
Q700D2	503	Zinc finger protein JACKD	no	no	0.394	0.294	0.321	2e-17
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.357	0.287	0.326	3e-15
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.362	0.268	0.315	5e-15
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.221	0.101	0.311	2e-08
O43313	823	ATM interactor OS=Homo sa	yes	no	0.264	0.120	0.280	1e-07
Q0P4W9	462	Fez family zinc finger pr	no	no	0.36	0.292	0.265	1e-07

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/228 (64%), Positives = 162/228 (71%), Gaps = 15/228 (6%)

Query: 145 VTVALHIGLPS---PSASEMASLLSSSSEISGHDHNGDHGGDDSSAGYPF-NRLNKGQYW 200
           V V LHIGLP    PS         +  EI+ +D           AG    N L+   YW
Sbjct: 83  VDVDLHIGLPGFGKPSNDAKQLKKRNGKEIATYD-----------AGKGIENELSGKAYW 131

Query: 201 IPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC 260
           IP P QILIG T FSC VC KTFNRYNN+QMHMWGHGSQYRKGPESL+GTQP  ML +PC
Sbjct: 132 IPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPC 191

Query: 261 YCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC 320
           YCC  GCRN+IDHPR+KPLKDFRTLQTHYKRKHG KPF CR CGK  AV+GDWRTHEKNC
Sbjct: 192 YCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNC 251

Query: 321 GKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVE 368
           GK W C+CGSDFKHKRSLKDH+KAFG+GH  Y    FEE+   +S  E
Sbjct: 252 GKRWVCVCGSDFKHKRSLKDHVKAFGSGHGPYPTGLFEEQASNSSVSE 299

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGP-------ESLRGTQPTGMLRLPC 260
           ++ P    C +C K F R  N++MHM GHG +Y+          ES+ G++P  + R  C
Sbjct: 238 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSC 297

Query: 261 YCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC-GKAFAVRGDWRTHEKN 319
                GC+ N +H + +PLK    ++ HYKR H  K F C +C  K F+V  D +THEK+
Sbjct: 298 PFL--GCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKH 355

Query: 320 CGK-LWYCICGSDFKHKRSLKDHIKAFGNGHA 350
           CGK  W C CG+ F  K  L  HI  F  GH 
Sbjct: 356 CGKNKWLCSCGTTFSRKDKLFGHIALF-QGHT 386

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 8/202 (3%)

Query: 179 DHGGDDSSAGYPFNRLNKGQYWI-PTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG 237
           DH   +S  G     L  G Y +     + ++ P    C +C K F R  N++MHM GHG
Sbjct: 246 DHDVKESDDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHG 305

Query: 238 SQYRKGPESLRGTQPTGMLRLPC--YCCA-PGCRNNIDHPRAKPLKDFRTLQTHYKRKHG 294
            +Y+      + ++ + +   P   Y C   GC+ N +H + +PLK    ++ HYKR H 
Sbjct: 306 DEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHC 365

Query: 295 IKPFMCRKCG-KAFAVRGDWRTHEKNCGK-LWYCICGSDFKHKRSLKDHIKAFGNGHAAY 352
            K + C +C  K F+V  D +THEK+CG+  W C CG+ F  K  L  H+  F     A 
Sbjct: 366 DKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPAL 425

Query: 353 GIDGFEEEDEPASEVEQDNESM 374
            +D  +     ASE  Q +E+M
Sbjct: 426 PMDDIKVTG--ASEQPQGSEAM 445

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC-----YC 262
           ++ P    C +C K F R  N++MHM GHG +Y+      +   P      P      Y 
Sbjct: 223 ILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYS 282

Query: 263 CA-PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-KAFAVRGDWRTHEKNC 320
           C   GC+ N  H   +PLK    ++ HYKR H  K  +C +CG K F+V  D +THEK+C
Sbjct: 283 CPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHC 342

Query: 321 GK-LWYCICGSDFKHKRSLKDHIKAFGNGHA 350
           G+  W C CG+ F  K  L  H+  F  GHA
Sbjct: 343 GRDRWLCSCGTSFSRKDKLFAHVALF-QGHA 372

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGC 267
           L+   +F C +C K F R  N+Q+H  GH       P  L+      +++   Y C    
Sbjct: 76  LMATNRFVCEICNKGFQRDQNLQLHRRGHNL-----PWKLKQRSKQEVIKKKVYICP--I 128

Query: 268 RNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWY-C 326
           +  + H  ++ L D   ++ HY RKHG K + C KC K +AV+ DW+ H K CG   Y C
Sbjct: 129 KTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKC 188

Query: 327 ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDN 371
            CG+ F  K S   H +AF         D   EE    S +  +N
Sbjct: 189 DCGTLFSRKDSFITH-RAF--------CDALTEEGARMSSLSNNN 224

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGC 267
           L+   +F C VC K F R  N+Q+H  GH   ++    +      +  +R   Y C    
Sbjct: 60  LMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRT------SKEVRKRVYVCPE-- 111

Query: 268 RNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWY-C 326
           +  + H  ++ L D   ++ H+ RKHG K + C KC K +AV+ DW+ H K CG   Y C
Sbjct: 112 KTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRC 171

Query: 327 ICGSDFKHKRSLKDHIKAFGNGHA 350
            CG+ F  + S   H +AF +  A
Sbjct: 172 DCGTIFSRRDSFITH-RAFCDALA 194

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 201 IPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC 260
           I    + L+   +F C +C K F R  N+Q+H  GH   ++    + +       +R   
Sbjct: 57  IALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSK------EVRKRV 110

Query: 261 YCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC 320
           Y C    ++ + H   + L D   ++ H+ RKHG K + C KC K +AV+ DW+ H K C
Sbjct: 111 YVCPE--KSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTC 168

Query: 321 GKLWY-CICGSDFKHKRSLKDHIKAF 345
           G   Y C CG+ F  + S   H +AF
Sbjct: 169 GTREYRCDCGTIFSRRDSFITH-RAF 193

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 261 YCC-APGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKN 319
           YCC   GC    D    +P   F  ++ H+ + H  K   C KC  ++    D + HE++
Sbjct: 127 YCCPIKGCPRGPD----RPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEED 182

Query: 320 CGKLWYCICGSDFKHKRSLKDHIKAFGNGH 349
           CGK + C CG  +  + +L+ HI  +  GH
Sbjct: 183 CGKTFQCTCGCPYASRTALQSHI--YRTGH 210

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 15/114 (13%)

Query: 261 YCC-APGCRNNIDHPRA--KPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHE 317
           YCC   GC      PR   +P   F  ++ H+ + H  K   C KC  ++    D + H 
Sbjct: 131 YCCPIEGC------PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHA 184

Query: 318 KNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDN 371
           ++CGK + C CG  +  + +L+ HI  +  GH        E  D P+ + + +N
Sbjct: 185 EDCGKTFRCTCGCPYASRTALQSHI--YRTGHEIPA----EHRDPPSKKRKMEN 232

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q0P4W9|FEZF1_XENTR Fez family zinc finger protein 1 OS=Xenopus tropicalis GN=fezf1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 72/200 (36%), Gaps = 65/200 (32%)

Query: 211 PTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPG---- 266
           P  F+C VC K FN + N+  HM  H                TG     C  C  G    
Sbjct: 257 PKVFTCEVCGKVFNAHYNLTRHMPVH----------------TGARPFVCKICGKGFRQA 300

Query: 267 ---CRNNIDHPRAKPLK---------DFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWR 314
              CR+ I H + KP K            TL TH +   G KPF+C  CGK F  +G+++
Sbjct: 301 STLCRHKIIHTQEKPHKCNQCGKAFNRSSTLNTHTRIHAGYKPFVCEFCGKGFHQKGNYK 360

Query: 315 THEKN-----------CGKLWYCI--------------------CGSDFKHKRSLKDHIK 343
            H+             C K ++ I                    CG  F     LK H++
Sbjct: 361 NHKLTHSGEKQFKCNICNKAFHQIYNLTFHMHTHNDKKPFTCPTCGKGFCRNFDLKKHVR 420

Query: 344 AF--GNGHAAYGIDGFEEED 361
                N  A + I G  +E+
Sbjct: 421 KLHDSNTAAPHAIGGTGQEE 440

Transcription repressor. Involved in the development of the forebrain region.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
225441744	345	PREDICTED: protein TRANSPARENT TESTA 1 [	0.904	0.982	0.727	1e-151
224139848	358	predicted protein [Populus trichocarpa]	0.941	0.986	0.707	1e-145
255571578	344	TRANSPARENT TESTA 1 protein, putative [R	0.885	0.965	0.674	1e-142
297739699	315	unnamed protein product [Vitis vinifera]	0.824	0.980	0.685	1e-142
356504819	358	PREDICTED: protein TRANSPARENT TESTA 1-l	0.904	0.946	0.684	1e-138
356570498	349	PREDICTED: protein TRANSPARENT TESTA 1-l	0.901	0.968	0.691	1e-128
297746348	360	unnamed protein product [Vitis vinifera]	0.882	0.919	0.654	1e-124
225435486	334	PREDICTED: protein TRANSPARENT TESTA 1 [	0.882	0.991	0.654	1e-124
357509779	347	Protein TRANSPARENT TESTA [Medicago trun	0.741	0.801	0.722	1e-123
302398671	348	C2H2L domain class transcription factor	0.893	0.962	0.640	1e-121

>gi|225441744|ref|XP_002277537.1| PREDICTED: protein TRANSPARENT TESTA 1 [Vitis vinifera]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/381 (72%), Positives = 303/381 (79%), Gaps = 42/381 (11%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQ------HFAQTNTFAFNQNQSHHPYYFQ 54
           M DPYS FF+G  KFN        H+P+++        H   TN+F+ + N         
Sbjct: 1   MTDPYSKFFAGWFKFNP-----LHHFPSAEPPSQPPYGHSLYTNSFSSHSNS------II 49

Query: 55  YQSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGK 114
           YQ+ PPSPPLREALPLLSLSP RHEE+ +++              +  ++AMDVD+ K K
Sbjct: 50  YQTPPPSPPLREALPLLSLSPTRHEEDQQQQH-------------SSCSSAMDVDRKK-K 95

Query: 115 LVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGH 174
             EES  FFSS+++T TA     DDDET  VTVALHIGLPSPSA+EMAS+LSSSSEI+  
Sbjct: 96  AKEES--FFSSSTNTNTAT-DDGDDDET--VTVALHIGLPSPSAAEMASMLSSSSEITDK 150

Query: 175 DHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW 234
           D +GD       +GYP NRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW
Sbjct: 151 DGDGD------VSGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW 204

Query: 235 GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG 294
           GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG
Sbjct: 205 GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG 264

Query: 295 IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGI 354
           IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGI
Sbjct: 265 IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGI 324

Query: 355 DGFEEEDEPASEVEQDNESMQ 375
           DGFEEEDEPASEVEQD+ESMQ
Sbjct: 325 DGFEEEDEPASEVEQDDESMQ 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139848|ref|XP_002323306.1| predicted protein [Populus trichocarpa] gi|222867936|gb|EEF05067.1| predicted protein [Populus trichocarpa]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/380 (70%), Positives = 311/380 (81%), Gaps = 27/380 (7%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQ-----HFAQTNTFAFNQNQSHHPYYFQY 55
           MADPYSNFF+G +KFNN+P    QHYP+  QQ     +F  + T   N NQ   PY+  Y
Sbjct: 1   MADPYSNFFTGWVKFNNNP---LQHYPSPPQQLPYTHNFYTSTTSPANHNQ---PYFHYY 54

Query: 56  QSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKL 115
            + P SPPL+EALPLL LSP R + + ++++ ++++  +       +  AMDVDK K + 
Sbjct: 55  HNPPRSPPLKEALPLLRLSPTR-QGKEQDQQRQDDDEEEEEEIQELSCRAMDVDKIKYRA 113

Query: 116 VEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGHD 175
            ++ + FFSS S+      ++++D+E+  V+VALHIGLPSPSA+EMA++LSSSSEI+  D
Sbjct: 114 KDQES-FFSSCSA------NNKEDEES--VSVALHIGLPSPSAAEMATVLSSSSEIT--D 162

Query: 176 HNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWG 235
            +GD  GDDS   YP +RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWG
Sbjct: 163 KDGD--GDDSV--YPISRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWG 218

Query: 236 HGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI 295
           HGSQYRKGPESLRGTQPTGMLRLPCYCCAPGC+NNIDHPRAKPLKDFRTLQTHYKRKHGI
Sbjct: 219 HGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGI 278

Query: 296 KPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGID 355
           KPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFG+GHAAYG D
Sbjct: 279 KPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGND 338

Query: 356 GFEEEDEPASEVEQDNESMQ 375
           GFEEEDEP+SEVEQDNESMQ
Sbjct: 339 GFEEEDEPSSEVEQDNESMQ 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571578|ref|XP_002526735.1| TRANSPARENT TESTA 1 protein, putative [Ricinus communis] gi|223533924|gb|EEF35649.1| TRANSPARENT TESTA 1 protein, putative [Ricinus communis]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/387 (67%), Positives = 282/387 (72%), Gaps = 55/387 (14%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQ------------QQHFAQTNTFAFNQNQSH 48
           MADPYSNFF+G  KFNN+P   + HYP+S               +F  TN F  N    +
Sbjct: 1   MADPYSNFFTGFFKFNNNPF--HHHYPSSNPIPPQFSYNTYNNSNFYTTNPFTINDQDQY 58

Query: 49  HPYYFQYQSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDV 108
           +P+   YQ+ PPSPPLREALPLLSLSP R+          E++H +              
Sbjct: 59  NPF-LSYQNRPPSPPLREALPLLSLSPARN----------EKDHQEQD------------ 95

Query: 109 DKNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSS 168
                                       E + +   VTVALHIGLPSPSA+EMAS+LSSS
Sbjct: 96  ----------------QDQDQEDEDQEQEQEQDDDTVTVALHIGLPSPSAAEMASVLSSS 139

Query: 169 SEISGHDHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNN 228
           S++      GD  GDDS+  YP NRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNN
Sbjct: 140 SDVITEKDIGD--GDDSTTEYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNN 197

Query: 229 MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH 288
           MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH
Sbjct: 198 MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH 257

Query: 289 YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNG 348
           YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNG
Sbjct: 258 YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNG 317

Query: 349 HAAYGIDGFEEEDEPASEVEQDNESMQ 375
           HAAYGIDGFEEEDEPASEVEQDN S+Q
Sbjct: 318 HAAYGIDGFEEEDEPASEVEQDNVSVQ 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739699|emb|CBI29881.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/381 (68%), Positives = 282/381 (74%), Gaps = 72/381 (18%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQ------HFAQTNTFAFNQNQSHHPYYFQ 54
           M DPYS FF+G  KFN        H+P+++        H   TN+F+ + N         
Sbjct: 1   MTDPYSKFFAGWFKFNP-----LHHFPSAEPPSQPPYGHSLYTNSFSSHSNS------II 49

Query: 55  YQSSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGK 114
           YQ+ PPSPPLREALPLLSLSP RHEE+ +++          SC+                
Sbjct: 50  YQTPPPSPPLREALPLLSLSPTRHEEDQQQQHS--------SCS---------------- 85

Query: 115 LVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGH 174
                                  +DDET  VTVALHIGLPSPSA+EMAS+LSSSSEI+  
Sbjct: 86  -----------------------NDDET--VTVALHIGLPSPSAAEMASMLSSSSEITDK 120

Query: 175 DHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW 234
           D +GD       +GYP NRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW
Sbjct: 121 DGDGD------VSGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW 174

Query: 235 GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG 294
           GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG
Sbjct: 175 GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG 234

Query: 295 IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGI 354
           IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGI
Sbjct: 235 IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGI 294

Query: 355 DGFEEEDEPASEVEQDNESMQ 375
           DGFEEEDEPASEVEQD+ESMQ
Sbjct: 295 DGFEEEDEPASEVEQDDESMQ 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504819|ref|XP_003521192.1| PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/387 (68%), Positives = 291/387 (75%), Gaps = 48/387 (12%)

Query: 1   MADPYSNFFSG---LLKFNNSPNQNYQHYPASQQQH---FAQTNTFAFNQNQSHHPYYFQ 54
           MADPYSNFFS    L +FN+  NQ +     S Q H   F            +   +Y Q
Sbjct: 1   MADPYSNFFSSSSPLFRFNH--NQYFPSSNPSPQHHNHNFINHTKTNDTTTTTAFFHYHQ 58

Query: 55  YQSS------PPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDV 108
           +Q++      PPSPPLRE LPLL LSP +       ++EEE E    +C       AMDV
Sbjct: 59  HQTTTAFSSFPPSPPLREELPLLKLSPTK-------QDEEEVEDLVSNC----TGGAMDV 107

Query: 109 DKNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSS 168
           ++ +  L EE                  +D+D +T+VTVALHIGLPSPSA+EMAS+LSSS
Sbjct: 108 EE-RIHLKEELE----------------DDEDGSTSVTVALHIGLPSPSAAEMASVLSSS 150

Query: 169 S-EISGHDHNGDHGG--DDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNR 225
           S EI+  D +GDHG   D SSAG+   RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNR
Sbjct: 151 SHEITDKDQHGDHGAAEDSSSAGF---RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNR 207

Query: 226 YNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTL 285
           YNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTL
Sbjct: 208 YNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTL 267

Query: 286 QTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAF 345
           QTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAF
Sbjct: 268 QTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAF 327

Query: 346 GNGHAAYGIDGFEEEDEPASEVEQDNE 372
           G+GHAAYGIDGFEEEDEPASEVEQDN+
Sbjct: 328 GSGHAAYGIDGFEEEDEPASEVEQDND 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570498|ref|XP_003553422.1| PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/379 (69%), Positives = 283/379 (74%), Gaps = 41/379 (10%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQ---- 56
           MADPYSNFFS    F    N N Q++P+S        N     +     P +F Y     
Sbjct: 1   MADPYSNFFSSSSPFFRF-NHN-QYFPSSNPSPQHHRNFINHTKTNDTTPTFFHYHQTTT 58

Query: 57  ---SSPPSPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKG 113
              S PPSPPLRE LPLL LSP + EEE E+           +C      AAMDV++ + 
Sbjct: 59  TFSSLPPSPPLREELPLLRLSPTKQEEEEEDLS---------NC----TGAAMDVEE-RI 104

Query: 114 KLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISG 173
            L EE                  +D+D TT VTVALHIGLPSPSA+EMAS+LSSSSEI+ 
Sbjct: 105 HLKEEE-----------------DDEDGTTNVTVALHIGLPSPSAAEMASVLSSSSEITD 147

Query: 174 HDHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHM 233
            D +GD   +D S+   F RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHM
Sbjct: 148 KDQHGDGAAEDHSSAGGF-RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHM 206

Query: 234 WGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKH 293
           WGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKH
Sbjct: 207 WGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKH 266

Query: 294 GIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYG 353
           GIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFG+GHAAYG
Sbjct: 267 GIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYG 326

Query: 354 IDGFEEEDEPASEVEQDNE 372
           IDGFEEEDEPASEVEQDN+
Sbjct: 327 IDGFEEEDEPASEVEQDND 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746348|emb|CBI16404.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/373 (65%), Positives = 275/373 (73%), Gaps = 42/373 (11%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPP 60
           M DPYSN+ +G   FN +P  +    P+S  Q       + FN+   ++     Y  SPP
Sbjct: 1   MTDPYSNYSNGW--FNLNPLYHISSSPSSSDQSLCSPR-YDFNKLYYNNFNTNNYHYSPP 57

Query: 61  SPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKLVEESN 120
           SPPLREALPLLSL P R++E+            + SCN      AM+VD NKGK  EE+ 
Sbjct: 58  SPPLREALPLLSLGPTRYDEQ------------ESSCN-----TAMEVDMNKGK--EETT 98

Query: 121 LFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGHDHNGDH 180
           L     SS+A        DDET  VTVALH+GLPSPS++++ S LSSS      +     
Sbjct: 99  L-----SSSA--------DDET--VTVALHLGLPSPSSTDLISRLSSSETEDKEEVTVAS 143

Query: 181 GGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQY 240
           G   SS G   + L KGQYWIPTPSQILIGPTQF+CP+C KTFNRYNNMQMHMWGHGSQY
Sbjct: 144 GY--SSTG---STLIKGQYWIPTPSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQY 198

Query: 241 RKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC 300
           RKGPESLRGTQPT ML+LPC+CCAPGCRNNIDHPR++PLKDFRTLQTHYKRKHGIKPFMC
Sbjct: 199 RKGPESLRGTQPTAMLKLPCFCCAPGCRNNIDHPRSRPLKDFRTLQTHYKRKHGIKPFMC 258

Query: 301 RKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEE 360
           RKCGKAFAVRGDWRTHEKNCGKLWYC CGSDFKHKRSLKDHIKAFG+GHAAYGID FEEE
Sbjct: 259 RKCGKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIKAFGHGHAAYGIDCFEEE 318

Query: 361 DEPASEVEQDNES 373
           DEPASE+EQDNES
Sbjct: 319 DEPASEIEQDNES 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435486|ref|XP_002282950.1| PREDICTED: protein TRANSPARENT TESTA 1 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/373 (65%), Positives = 275/373 (73%), Gaps = 42/373 (11%)

Query: 1   MADPYSNFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFAFNQNQSHHPYYFQYQSSPP 60
           M DPYSN+ +G   FN +P  +    P+S  Q       + FN+   ++     Y  SPP
Sbjct: 1   MTDPYSNYSNGW--FNLNPLYHISSSPSSSDQSLCSPR-YDFNKLYYNNFNTNNYHYSPP 57

Query: 61  SPPLREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKLVEESN 120
           SPPLREALPLLSL P R++E+            + SCN      AM+VD NKGK  EE+ 
Sbjct: 58  SPPLREALPLLSLGPTRYDEQ------------ESSCN-----TAMEVDMNKGK--EETT 98

Query: 121 LFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSSEISGHDHNGDH 180
           L     SS+A        DDET  VTVALH+GLPSPS++++ S LSSS      +     
Sbjct: 99  L-----SSSA--------DDET--VTVALHLGLPSPSSTDLISRLSSSETEDKEEVTVAS 143

Query: 181 GGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQY 240
           G   SS G   + L KGQYWIPTPSQILIGPTQF+CP+C KTFNRYNNMQMHMWGHGSQY
Sbjct: 144 GY--SSTG---STLIKGQYWIPTPSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQY 198

Query: 241 RKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC 300
           RKGPESLRGTQPT ML+LPC+CCAPGCRNNIDHPR++PLKDFRTLQTHYKRKHGIKPFMC
Sbjct: 199 RKGPESLRGTQPTAMLKLPCFCCAPGCRNNIDHPRSRPLKDFRTLQTHYKRKHGIKPFMC 258

Query: 301 RKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEE 360
           RKCGKAFAVRGDWRTHEKNCGKLWYC CGSDFKHKRSLKDHIKAFG+GHAAYGID FEEE
Sbjct: 259 RKCGKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIKAFGHGHAAYGIDCFEEE 318

Query: 361 DEPASEVEQDNES 373
           DEPASE+EQDNES
Sbjct: 319 DEPASEIEQDNES 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509779|ref|XP_003625178.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355500193|gb|AES81396.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/313 (72%), Positives = 247/313 (78%), Gaps = 35/313 (11%)

Query: 64  LREALPLLSLSPRRHEEEAEEEEEEEEEHHQHSCNIAEAAAAMDVDKNKGKLVEESNLFF 123
           LRE LPLL+L P + E+  E+++E E +     C       AMD+++ +           
Sbjct: 66  LREELPLLNLIPTKQEKYDEDQQEHEVDIQDLPC------TAMDLEERE----------- 108

Query: 124 SSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSS---EISGHDHNGDH 180
                        +    TT VTVALHIGLP+PSA+EMAS+LSSS+   EI   D   +H
Sbjct: 109 ------------EDGSSRTTTVTVALHIGLPNPSAAEMASVLSSSNNSSEIIVTDK--EH 154

Query: 181 GGDDSSAGYPFN-RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQ 239
           GG+DS +G+  N RLNKGQYWIPTPSQILIGPTQFSCPVC KTFNRYNNMQMHMWGHGSQ
Sbjct: 155 GGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQ 214

Query: 240 YRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM 299
           YRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM
Sbjct: 215 YRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM 274

Query: 300 CRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEE 359
           CRKC KAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFG+GHAAYG DGFEE
Sbjct: 275 CRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGCDGFEE 334

Query: 360 EDEPASEVEQDNE 372
           EDEPASEVEQDNE
Sbjct: 335 EDEPASEVEQDNE 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398671|gb|ADL36630.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/387 (64%), Positives = 275/387 (71%), Gaps = 52/387 (13%)

Query: 1   MAD-PYS-NFFSGLLKFNNSPNQNYQHYPASQQQHFAQTNTFA--FNQNQSHHPYYFQYQ 56
           MAD PYS NFFSGLLKFN   +++++  P            +A  F  NQ+H  Y+   Q
Sbjct: 1   MADYPYSSNFFSGLLKFN-PLHRHHEPPPQPPPHPSQPPPPYAHNFFLNQTHSFYFLTDQ 59

Query: 57  ----SSPPSPPLREALPLLS-LSPRRHEEEAEEEEEE--EEEHHQHSCNIAEAAAAMDVD 109
               + PPSPPLREALPLLS LSP     + E+++++   E+HH       E        
Sbjct: 60  QNLNTRPPSPPLREALPLLSRLSPTNQHYDPEDQQQQHLHEDHHHFKDQQDEEDGDG--- 116

Query: 110 KNKGKLVEESNLFFSSTSSTATAALHHEDDDETTAVTVALHIGLPSPSASEMASLLSSSS 169
                                         ++  +VTVALHIGLP+PS SEMAS+LS+++
Sbjct: 117 ------------------------------EDDESVTVALHIGLPNPSDSEMASVLSAAA 146

Query: 170 EISGHDHNGDHGGDDSSAGYPFN-RLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNN 228
             S           + SAGYP   RLNKGQYWIPTPSQILIGPTQFSCPVC KTFNRYNN
Sbjct: 147 NSS------SSEMSNDSAGYPMTCRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNN 200

Query: 229 MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH 288
           MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC PGCRNNIDHPRAKPLKDFRTLQTH
Sbjct: 201 MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCTPGCRNNIDHPRAKPLKDFRTLQTH 260

Query: 289 YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNG 348
           YKRKHGIK FMCRKCGKAFAVRGDWRTHEKNCGKLW+CICGSDFKHKRSLKDHIKAFGNG
Sbjct: 261 YKRKHGIKHFMCRKCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHIKAFGNG 320

Query: 349 HAAYGIDGFEEEDEPASEVEQDNESMQ 375
           HAAYG +GFEEEDEPASEVEQDNESMQ
Sbjct: 321 HAAYGFNGFEEEDEPASEVEQDNESMQ 347

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2076641	383	NTT "AT3G57670" [Arabidopsis t	0.501	0.490	0.942	6.5e-116
TAIR|locus:2008281	337	WIP5 "AT1G51220" [Arabidopsis	0.469	0.522	0.839	4.3e-94
TAIR|locus:2091931	412	WIP4 "AT3G20880" [Arabidopsis	0.450	0.410	0.854	8.9e-92
TAIR|locus:2205334	302	DOT5 "DEFECTIVELY ORGANIZED TR	0.469	0.582	0.756	7.4e-82
TAIR|locus:2008386	303	TT1 "transparent testa 1" [Ara	0.472	0.584	0.745	4.1e-79
TAIR|locus:2200003	337	WIP3 "AT1G08290" [Arabidopsis	0.44	0.489	0.745	2.1e-75
UNIPROTKB|Q943I6	522	LOC_Os01g65080 "Zinc finger pr	0.44	0.316	0.365	3.1e-24
TAIR|locus:2036303	499	STOP1 "AT1G34370" [Arabidopsis	0.432	0.324	0.395	5.6e-24
TAIR|locus:2172701	373	AT5G22890 [Arabidopsis thalian	0.357	0.359	0.416	6.1e-23
UNIPROTKB|Q2QX40	465	STAR3 "Zinc finger protein STA	0.381	0.307	0.392	1.9e-22

TAIR|locus:2076641 NTT "AT3G57670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 6.5e-116, Sum P(3) = 6.5e-116
 Identities = 180/191 (94%), Positives = 183/191 (95%)

Query:   188 GYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESL 247
             G   +RLNKGQYWIPTPSQILIGPTQFSCPVC KTFNRYNNMQMHMWGHGSQYRKGPESL
Sbjct:   191 GCRISRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESL 250

Query:   248 RGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAF 307
             RGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAF
Sbjct:   251 RGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAF 310

Query:   308 AVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEV 367
             AVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGH AYGIDGF+EEDEPASEV
Sbjct:   311 AVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGIDGFDEEDEPASEV 370

Query:   368 EQ---DNESMQ 375
             EQ   D+ESMQ
Sbjct:   371 EQLDNDHESMQ 381

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0010500 "transmitting tissue development" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2008281 WIP5 "AT1G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
 Identities = 152/181 (83%), Positives = 164/181 (90%)

Query:   194 LNKGQ-YWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQP 252
             L++G  YWIPTPSQILIGPTQF+CP+C KTFNRYNNMQMHMWGHGSQYRKGPESLRGTQP
Sbjct:   157 LHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQP 216

Query:   253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGD 312
             TGMLRLPC+CCAPGC+NNIDHPRAKPLKDFRTLQTHYKRKHG KPF CR CGKAFAV+GD
Sbjct:   217 TGMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGD 276

Query:   313 WRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGF--EEED--EPASEVE 368
             WRTHEKNCGKLWYC CGSDFKHKRSLKDH+KAFGNGH   GID F  + ED  + AS++E
Sbjct:   277 WRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCGIDSFGGDHEDYYDAASDIE 336

Query:   369 Q 369
             Q
Sbjct:   337 Q 337

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2091931 WIP4 "AT3G20880" [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
 Identities = 147/172 (85%), Positives = 160/172 (93%)

Query:   199 YWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRL 258
             +WIPTPSQIL+GPTQFSCP+C KTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPT ML+L
Sbjct:   241 FWIPTPSQILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKL 300

Query:   259 PCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK 318
             PCYCCAPGC+NNIDHPRA+PLKDFRTLQTHYKRKHG++PF CR+CGKAFAV+GDWRTHEK
Sbjct:   301 PCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEK 360

Query:   319 NCGKLWYCICGSDFKHKRSLKDHIKAFGNGHA-AYGIDGFEEEDEPASEVEQ 369
             NCGKLWYC CGSDFKHKRSLKDH+KAFGNGH    GID   EE+E AS+VEQ
Sbjct:   361 NCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCCGID--HEEEEAASDVEQ 410

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205334 DOT5 "DEFECTIVELY ORGANIZED TRIBUTARIES 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 140/185 (75%), Positives = 159/185 (85%)

Query:   196 KGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTG- 254
             +GQYWIP+ SQIL+GPTQFSC VC KTFNR+NNMQMHMWGHGSQYRKGPESLRGT+ +  
Sbjct:    83 QGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSS 142

Query:   255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK-CGKAFAVRGDW 313
             +LRLPCYCCA GC+NNIDHPR+KPLKDFRTLQTHYKRKHG KPF CRK C K FAVRGDW
Sbjct:   143 ILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDW 202

Query:   314 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAY-------GIDGFEEEDEPASE 366
             RTHEKNCGKLW+C+CGSDFKHKRSLKDH++AFG+GHAA+       GI   +E+DE   E
Sbjct:   203 RTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAHTVSDRVVGIGDADEDDEEEEE 262

Query:   367 VEQDN 371
              E+D+
Sbjct:   263 EEEDD 267

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2008386 TT1 "transparent testa 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
 Identities = 132/177 (74%), Positives = 144/177 (81%)

Query:   192 NRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQ 251
             N L+   YWIP P QILIG T FSC VC KTFNRYNN+QMHMWGHGSQYRKGPESL+GTQ
Sbjct:   123 NELSGKAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQ 182

Query:   252 PTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG 311
             P  ML +PCYCC  GCRN+IDHPR+KPLKDFRTLQTHYKRKHG KPF CR CGK  AV+G
Sbjct:   183 PRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKG 242

Query:   312 DWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVE 368
             DWRTHEKNCGK W C+CGSDFKHKRSLKDH+KAFG+GH  Y    FEE+   +S  E
Sbjct:   243 DWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVKAFGSGHGPYPTGLFEEQASNSSVSE 299

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009813 "flavonoid biosynthetic process" evidence=IMP

TAIR|locus:2200003 WIP3 "AT1G08290" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 126/169 (74%), Positives = 148/169 (87%)

Query:   198 QYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGT-QPTGML 256
             ++WIP+P+QI +GP QF+C +C KTFNRYNNMQMHMWGHGS++RKG +SL+GT QP  +L
Sbjct:   164 RFWIPSPAQIHVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGADSLKGTIQPAAIL 223

Query:   257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTH 316
             RLPCYCCA GC+NNI+HPR+KPLKDFRTLQTHYKRKHG KPF C KCGKA AV+GDWRTH
Sbjct:   224 RLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWRTH 283

Query:   317 EKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYG---IDGFEEEDE 362
             EKNCGKLWYC CGSDFKHKRSLKDHI++FG+GH+ +     DGFEE+ E
Sbjct:   284 EKNCGKLWYCTCGSDFKHKRSLKDHIRSFGSGHSPHPSLLFDGFEEDTE 332

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q943I6 LOC_Os01g65080 "Zinc finger protein STOP1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 283 (104.7 bits), Expect = 3.1e-24, P = 3.1e-24
 Identities = 64/175 (36%), Positives = 93/175 (53%)

Query:   206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC--YCC 263
             +IL   T F C +C K F R  N++MHM GHG +Y+      + ++ + +   P   Y C
Sbjct:   275 EILAPHTHF-CLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSC 333

Query:   264 A-PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-KAFAVRGDWRTHEKNCG 321
                GC+ N +H + +PLK    ++ HYKR H  K + C +C  K F+V  D +THEK+CG
Sbjct:   334 PYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCG 393

Query:   322 K-LWYCICGSDFKHKRSLKDHIKAFGNGHA-AYGIDGFEEEDEPASEVEQDNESM 374
             +  W C CG+ F  K  L  H+  F  GH  A  +D  +     ASE  Q +E+M
Sbjct:   394 RDKWLCSCGTTFSRKDKLFGHVALF-QGHTPALPMDDIKVTG--ASEQPQGSEAM 445

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2036303 STOP1 "AT1G34370" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 5.6e-24, P = 5.6e-24
 Identities = 70/177 (39%), Positives = 91/177 (51%)

Query:   206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKG-----P--ESLRGTQPTGMLRL 258
             +IL   T F C +C K F R  N++MHM GHG +Y+       P  ES+ G++P  + R 
Sbjct:   237 EILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRY 295

Query:   259 PCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-KAFAVRGDWRTHE 317
              C     GC+ N +H + +PLK    ++ HYKR H  K F C +C  K F+V  D +THE
Sbjct:   296 SCPFL--GCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHE 353

Query:   318 KNCGK-LWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDNES 373
             K+CGK  W C CG+ F  K  L  HI  F  GH    I   EE    AS   Q   S
Sbjct:   354 KHCGKNKWLCSCGTTFSRKDKLFGHIALF-QGHTP-AIP-LEETKPSASTSTQRGSS 407

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0010447 "response to acidity" evidence=IMP

TAIR|locus:2172701 AT5G22890 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 62/149 (41%), Positives = 79/149 (53%)

Query:   216 CPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGM-------LRLPCYCCAP-GC 267
             C +C K F R  N++MHM  HG +Y K  E+L    PT         L+   Y C   GC
Sbjct:   219 CQICGKGFKRDANLRMHMRAHGDEY-KTREAL--ISPTSQDKKGGYSLKKHYYSCPQHGC 275

Query:   268 RNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-KAFAVRGDWRTHEKNCGKL-WY 325
             R N  H + +PLK     + HYKR H  K +MCR+C  K F+V  D RTHEK+CG + W 
Sbjct:   276 RWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSDLRTHEKHCGDIKWV 335

Query:   326 CICGSDFKHKRSLKDHIKAFGNGHA-AYG 353
             C CG+ F  K  L  H+  F  GH  A+G
Sbjct:   336 CSCGTKFSRKDKLMSHVSLF-LGHVPAHG 363

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q2QX40 STAR3 "Zinc finger protein STAR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 265 (98.3 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 60/153 (39%), Positives = 80/153 (52%)

Query:   206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPT-GMLRLPC---- 260
             +IL   T F C +C K F R  N++MHM GHG +Y+      +   P  G  + P     
Sbjct:   222 EILAPHTHF-CGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERR 280

Query:   261 YCCA-PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-KAFAVRGDWRTHEK 318
             Y C   GC+ N  H   +PLK    ++ HYKR H  K  +C +CG K F+V  D +THEK
Sbjct:   281 YSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEK 340

Query:   319 NCGK-LWYCICGSDFKHKRSLKDHIKAFGNGHA 350
             +CG+  W C CG+ F  K  L  H+  F  GHA
Sbjct:   341 HCGRDRWLCSCGTSFSRKDKLFAHVALF-QGHA 372

GO:0005634 "nucleus" evidence=IDA

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025545001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.94
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.88
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.78
KOG3576	267	consensus Ovo and related transcription factors [T	99.73
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.71
KOG3608	467	consensus Zn finger proteins [General function pre	99.63
KOG3608	467	consensus Zn finger proteins [General function pre	99.6
KOG3576	267	consensus Ovo and related transcription factors [T	99.44
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.4
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.33
PLN03086	567	PRLI-interacting factor K; Provisional	99.14
PHA00733	128	hypothetical protein	99.06
PLN03086	567	PRLI-interacting factor K; Provisional	99.02
PHA02768	55	hypothetical protein; Provisional	98.87
PHA00733	128	hypothetical protein	98.78
PHA02768	55	hypothetical protein; Provisional	98.69
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.6
KOG3993	500	consensus Transcription factor (contains Zn finger	98.46
PHA00732	79	hypothetical protein	98.16
PHA00616	44	hypothetical protein	98.12
KOG3993	500	consensus Transcription factor (contains Zn finger	98.06
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.06
PHA00616	44	hypothetical protein	97.78
PHA00732	79	hypothetical protein	97.61
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.43
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.38
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.26
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.25
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.13
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.02
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.0
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.97
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.65
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.61
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.5
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.37
PRK04860	160	hypothetical protein; Provisional	96.14
COG5048	467	FOG: Zn-finger [General function prediction only]	96.12
smart00355	26	ZnF_C2H2 zinc finger.	95.9
smart00355	26	ZnF_C2H2 zinc finger.	95.78
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.52
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.83
PRK04860	160	hypothetical protein; Provisional	94.7
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.46
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.33
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.21
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	93.56
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.19
COG5048	467	FOG: Zn-finger [General function prediction only]	93.01
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.77
KOG1146	1406	consensus Homeobox protein [General function predi	90.59
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.26
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.85
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.82
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	88.67
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.72
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	87.64
KOG2186	276	consensus Cell growth-regulating nucleolar protein	86.57
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	85.37
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	84.49
KOG1146	1406	consensus Homeobox protein [General function predi	83.44
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	81.45
PF01352	41	KRAB: KRAB box; InterPro: IPR001909 The Krueppel-a	80.49

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.94  E-value=2.2e-27  Score=217.13  Aligned_cols=134  Identities=28%  Similarity=0.464  Sum_probs=124.5

Q ss_pred             CCCCCCCCCCCCCCCCCCcCCCCccccccC---CCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcc
Q 040794          181 GGDDSSAGYPFNRLNKGQYWIPTPSQILIG---PTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLR  257 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~l~~h~~~h~g---~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      .....+.|..|++.+.....|.+|.|+|-.   .+.+.|+.|+|.|..-..|.+|+++|+                  .+
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~------------------l~  187 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT------------------LP  187 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC------------------CC
Confidence            344456788899999999999999999865   667999999999999999999999993                  68


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCC
Q 040794          258 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKH  334 (375)
Q Consensus       258 ~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~  334 (375)
                      ++|.+||            |.|...=-|+.|+|+|||||||.|..|+|+|+.+++|+.||.||  .|+|+| .|+|+|++
T Consensus       188 c~C~iCG------------KaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  188 CECGICG------------KAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL  255 (279)
T ss_pred             ccccccc------------ccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence            9999999            99999999999999999999999999999999999999999998  699999 99999999


Q ss_pred             hHHHHHHHHH
Q 040794          335 KRSLKDHIKA  344 (375)
Q Consensus       335 ~~~L~~H~r~  344 (375)
                      ++.|.+|...
T Consensus       256 ~SyLnKH~ES  265 (279)
T KOG2462|consen  256 KSYLNKHSES  265 (279)
T ss_pred             HHHHHHhhhh
Confidence            9999999876

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.88  E-value=1.9e-23  Score=191.39  Aligned_cols=120  Identities=23%  Similarity=0.479  Sum_probs=111.1

Q ss_pred             CceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHh
Q 040794          212 TQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKR  291 (375)
Q Consensus       212 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~  291 (375)
                      ..|+|+.|||.+.+.++|.+|+.+|-.-             ...+-+.|..|+            |.|.....|..|+|+
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~-------------~s~ka~~C~~C~------------K~YvSmpALkMHirT  183 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSL-------------DSKKAFSCKYCG------------KVYVSMPALKMHIRT  183 (279)
T ss_pred             Cceeccccccccccccccchhhcccccc-------------cccccccCCCCC------------ceeeehHHHhhHhhc
Confidence            3599999999999999999999999321             335779999999            999999999999999


Q ss_pred             hcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCCCCC
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEE  359 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~~~  359 (375)
                      |+  -+++|.+|||+|.+..-|+.|+|+|  ||||.| .|+|+|+.+++|+.||++ |.+.|.|+|.+|.+
T Consensus       184 H~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQT-HS~~K~~qC~~C~K  251 (279)
T KOG2462|consen  184 HT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQT-HSDVKKHQCPRCGK  251 (279)
T ss_pred             cC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHh-hcCCccccCcchhh
Confidence            98  7899999999999999999999976  999999 999999999999999999 89999999999964

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.78  E-value=5.5e-20  Score=188.40  Aligned_cols=77  Identities=31%  Similarity=0.686  Sum_probs=70.7

Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhcC------CCeee----e
Q 040794          258 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCG------KLWYC----I  327 (375)
Q Consensus       258 ~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~------k~~~C----~  327 (375)
                      -+|.+|.            |+++.++.|+-|+|+|+|||||+|.+||++|+.+++|+.||.+|.      -++.|    +
T Consensus       606 NqCiiC~------------rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i  673 (958)
T KOG1074|consen  606 NQCIICL------------RVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI  673 (958)
T ss_pred             cceeeee------------ecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhh
Confidence            4588888            999999999999999999999999999999999999999999983      35778    6


Q ss_pred             cCcccCChHHHHHHHHHhCC
Q 040794          328 CGSDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       328 Cgk~F~~~~~L~~H~r~~H~  347 (375)
                      |-+.|.....|..|+|+ |.
T Consensus       674 c~~kftn~V~lpQhIri-H~  692 (958)
T KOG1074|consen  674 CQKKFTNAVTLPQHIRI-HL  692 (958)
T ss_pred             hcccccccccccceEEe-ec
Confidence            99999999999999999 55

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.73  E-value=1.6e-18  Score=151.90  Aligned_cols=109  Identities=29%  Similarity=0.546  Sum_probs=101.8

Q ss_pred             ceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhh
Q 040794          213 QFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRK  292 (375)
Q Consensus       213 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H  292 (375)
                      .|.|.+|+|.|.-...|.+|++.|                ...+++.|..||            |.|.+.-.|++|+|+|
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch----------------~~vkr~lct~cg------------kgfndtfdlkrh~rth  168 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCH----------------SDVKRHLCTFCG------------KGFNDTFDLKRHTRTH  168 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhc----------------cHHHHHHHhhcc------------Ccccchhhhhhhhccc
Confidence            599999999999999999999999                888999999999            9999999999999999


Q ss_pred             cCCCccccccccccccChhhHHHHHH-hc------------CCCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          293 HGIKPFMCRKCGKAFAVRGDWRTHEK-NC------------GKLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       293 ~gekpy~C~~Cgk~F~~~~~L~~H~k-~h------------~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      ||.+||+|..|+|+|+++..|..|++ +|            .|.|+| .||.+-.....+..|++.+|...
T Consensus       169 tgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  169 TGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             cCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            99999999999999999999999987 34            378999 99999999999999999988764

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.71  E-value=2.5e-18  Score=176.34  Aligned_cols=61  Identities=18%  Similarity=0.299  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHhhcccccCC
Q 040794          178 GDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGS  238 (375)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~  238 (375)
                      .+.....+..|-.|.++..-++.|+.|+|+|+|++||+|.+||++|.++.||+.||.+|..
T Consensus       598 ~~~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka  658 (958)
T KOG1074|consen  598 SENKRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA  658 (958)
T ss_pred             cccccCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc
Confidence            3445556677899999999999999999999999999999999999999999999999953

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.63  E-value=1.2e-16  Score=150.27  Aligned_cols=144  Identities=17%  Similarity=0.264  Sum_probs=129.7

Q ss_pred             CCCCCCCCCCCcCCCCccccccC------------CCc-eecCc--ccccccCchHHhhcccccCCCCCCCCCCcCCCCC
Q 040794          188 GYPFNRLNKGQYWIPTPSQILIG------------PTQ-FSCPV--CCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQP  252 (375)
Q Consensus       188 ~~~~~~~~~~~~~l~~h~~~h~g------------~kp-~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~  252 (375)
                      ...|++.|....|+..|...|+.            ++| +.|.-  |.+.|..+.+|..|.++|                
T Consensus       139 WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~H----------------  202 (467)
T KOG3608|consen  139 WEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTH----------------  202 (467)
T ss_pred             hhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhc----------------
Confidence            36788999999998888766543            334 66754  999999999999999999                


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC--CCccccccccccccChhhHHHHHHhcCCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG--IKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g--ekpy~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cg  329 (375)
                      +++|...|+.||            ..|..+..|..|+|..+.  ..+|+|..|-|.|+....|+.|+..|..-|+| .|+
T Consensus       203 s~eKvvACp~Cg------------~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCd  270 (467)
T KOG3608|consen  203 SNEKVVACPHCG------------ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCD  270 (467)
T ss_pred             CCCeEEecchHH------------HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccc
Confidence            899999999999            999999999999998763  57999999999999999999999999999999 999


Q ss_pred             cccCChHHHHHHHHHhCCCCCCCCCCCCCC
Q 040794          330 SDFKHKRSLKDHIKAFGNGHAAYGIDGFEE  359 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~ge~~y~C~~~~~  359 (375)
                      .+....++|.+|||..|...|||+||.||.
T Consensus       271 mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~  300 (467)
T KOG3608|consen  271 MTCSSASSLTTHIRYRHSKDKPFKCDECDT  300 (467)
T ss_pred             cCCCChHHHHHHHHhhhccCCCccccchhh
Confidence            999999999999999999999999999974

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.60  E-value=2.9e-16  Score=147.79  Aligned_cols=160  Identities=15%  Similarity=0.254  Sum_probs=114.3

Q ss_pred             CCCCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCC
Q 040794          188 GYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGC  267 (375)
Q Consensus       188 ~~~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~  267 (375)
                      ...|.+.+..++.|+.|++.|+++|...|+.||..|.++..|..|.+..+.              ....+|+|..|.+.|
T Consensus       182 W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~--------------l~~n~fqC~~C~KrF  247 (467)
T KOG3608|consen  182 WAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTE--------------LNTNSFQCAQCFKRF  247 (467)
T ss_pred             chhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhh--------------hcCCchHHHHHHHHH
Confidence            466888888999999999999999999999999999999988888876531              112244444444111


Q ss_pred             CCC--------------CCCCCCcccCCHHHHHHHHH-hhcCCCccccccccccccChhhHHHHHHhc-CCCeee-e--c
Q 040794          268 RNN--------------IDHPRAKPLKDFRTLQTHYK-RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC-GKLWYC-I--C  328 (375)
Q Consensus       268 ~~~--------------~~h~~~k~f~~~~~L~~H~r-~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-~k~~~C-~--C  328 (375)
                      +-.              .+--...+....++|.+|+| .|...|||+|..|++.|.+.+.|.+|..+| +-.|.| .  |
T Consensus       248 aTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C  327 (467)
T KOG3608|consen  248 ATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDC  327 (467)
T ss_pred             hHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCC
Confidence            000              00000044455667777766 366788888888888888888888888888 556888 3  8


Q ss_pred             CcccCChHHHHHHHHHhCCCC--CCCCCCCCCCCC
Q 040794          329 GSDFKHKRSLKDHIKAFGNGH--AAYGIDGFEEED  361 (375)
Q Consensus       329 gk~F~~~~~L~~H~r~~H~ge--~~y~C~~~~~~~  361 (375)
                      ..+|+....|++|++.+|.|.  .+|+|-.||.--
T Consensus       328 ~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~f  362 (467)
T KOG3608|consen  328 HYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFF  362 (467)
T ss_pred             cHHHHHHHHHHHHHHHhccCCCCCceeeecchhhh
Confidence            888888888888888877664  578888887644

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.44  E-value=1.7e-14  Score=126.76  Aligned_cols=116  Identities=23%  Similarity=0.350  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcc
Q 040794          178 GDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLR  257 (375)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      +...+...+.|..|+|.|..+..|.+|++.|...|.|.|..|||.|+..-.|++|+++|                +|.+|
T Consensus       110 gsssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rth----------------tgvrp  173 (267)
T KOG3576|consen  110 GSSSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTH----------------TGVRP  173 (267)
T ss_pred             cCCCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccc----------------cCccc
Confidence            34455677889999999999999999999999999999999999999999999999999                99999


Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC-----------CCccccccccccccChhhHHHHHHhcC
Q 040794          258 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG-----------IKPFMCRKCGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       258 ~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g-----------ekpy~C~~Cgk~F~~~~~L~~H~k~h~  321 (375)
                      |+|..|+            |.|++.-.|..|.+.-+|           .|-|.|..||.+-.....+..|++.+.
T Consensus       174 ykc~~c~------------kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  174 YKCSLCE------------KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             cchhhhh------------HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            9999999            999999999999875433           477999999999999999999998763

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.40  E-value=4.9e-14  Score=142.96  Aligned_cols=80  Identities=26%  Similarity=0.492  Sum_probs=67.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      +...+|.|..|.            |.|...+.|.+|.--|+|.|||+|.+|.|+|..+-+|+.|+|.|  +|||+| .|+
T Consensus       890 te~gmyaCDqCD------------K~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKCl  957 (1007)
T KOG3623|consen  890 TEDGMYACDQCD------------KAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCL  957 (1007)
T ss_pred             CccccchHHHHH------------HHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhh
Confidence            445678888888            88888888888888888888888888888888888888888865  788888 888


Q ss_pred             cccCChHHHHHHHHH
Q 040794          330 SDFKHKRSLKDHIKA  344 (375)
Q Consensus       330 k~F~~~~~L~~H~r~  344 (375)
                      |+|+++.+.-.||..
T Consensus       958 KRFSHSGSYSQHMNH  972 (1007)
T KOG3623|consen  958 KRFSHSGSYSQHMNH  972 (1007)
T ss_pred             hhcccccchHhhhcc
Confidence            888888888888874

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.33  E-value=2.7e-13  Score=137.64  Aligned_cols=66  Identities=27%  Similarity=0.550  Sum_probs=61.2

Q ss_pred             hcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCCCC
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFE  358 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~~  358 (375)
                      .+.+-+|.|..|+|+|...+.|.+|+--|  .|||+| +|.|+|++|..|..|+|. |.|||||+||.|.
T Consensus       889 kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRL-HSGEKPfQCdKCl  957 (1007)
T KOG3623|consen  889 KTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRL-HSGEKPFQCDKCL  957 (1007)
T ss_pred             cCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhh-ccCCCcchhhhhh
Confidence            35567899999999999999999998855  799999 999999999999999999 9999999999884

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.14  E-value=8.2e-11  Score=120.27  Aligned_cols=64  Identities=22%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhcCCCccccccccccccC----------hhhHHHHHHhc-CCCeee-ecCcccCChHHHHHHHHHhC
Q 040794          282 FRTLQTHYKRKHGIKPFMCRKCGKAFAV----------RGDWRTHEKNC-GKLWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       282 ~~~L~~H~r~H~gekpy~C~~Cgk~F~~----------~~~L~~H~k~h-~k~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      +..|..|+++|.+.|++.|..|++.|..          ...|..|+.++ .+++.| .||+.|..+ .|..|+...|
T Consensus       489 R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        489 KEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             hhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence            3455555555555555555555555521          22455555544 355555 555554444 3445544433

>PHA00733 hypothetical protein

Probab=99.06  E-value=1.1e-10  Score=98.39  Aligned_cols=81  Identities=20%  Similarity=0.355  Sum_probs=67.7

Q ss_pred             CCcccccCCCCCCCCCCCCCCCCcccCCHHH------HHHHHHhhcCCCccccccccccccChhhHHHHHHhcCCCeee-
Q 040794          254 GMLRLPCYCCAPGCRNNIDHPRAKPLKDFRT------LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-  326 (375)
Q Consensus       254 ~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~------L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-  326 (375)
                      ..+++.|.+|.            +.|.....      |.+|+.. .+.+||.|..||+.|.....|..|++++.++|.| 
T Consensus        37 ~~~~~~~~~~~------------~~~~~~~~l~~~~~l~~~~~~-~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~  103 (128)
T PHA00733         37 EQKRLIRAVVK------------TLIYNPQLLDESSYLYKLLTS-KAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCP  103 (128)
T ss_pred             hhhhHHHHHHh------------hhccChhhhcchHHHHhhccc-CCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCC
Confidence            34788999998            55554443      4445434 4589999999999999999999999988889999 


Q ss_pred             ecCcccCChHHHHHHHHHhCC
Q 040794          327 ICGSDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       327 ~Cgk~F~~~~~L~~H~r~~H~  347 (375)
                      .|++.|.....|++|++.+|.
T Consensus       104 ~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        104 VCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999998775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.02  E-value=7.3e-10  Score=113.37  Aligned_cols=86  Identities=21%  Similarity=0.466  Sum_probs=73.9

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcc
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSD  331 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~  331 (375)
                      ...+.|..|+            +.|. ...|..|+++|+  ++|.|+ ||+.| .+..|..|+.+|  .|++.| .|++.
T Consensus       451 ~~H~~C~~Cg------------k~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~  513 (567)
T PLN03086        451 KNHVHCEKCG------------QAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDM  513 (567)
T ss_pred             ccCccCCCCC------------Cccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCc
Confidence            3556899999            8885 688999999986  899999 99765 678999999876  799999 99999


Q ss_pred             cC----------ChHHHHHHHHHhCCCCCCCCCCCCCC
Q 040794          332 FK----------HKRSLKDHIKAFGNGHAAYGIDGFEE  359 (375)
Q Consensus       332 F~----------~~~~L~~H~r~~H~ge~~y~C~~~~~  359 (375)
                      |.          ..+.|..|..+.  |.+++.|+.|+.
T Consensus       514 v~~g~~~~d~~d~~s~Lt~HE~~C--G~rt~~C~~Cgk  549 (567)
T PLN03086        514 VQAGGSAMDVRDRLRGMSEHESIC--GSRTAPCDSCGR  549 (567)
T ss_pred             cccCccccchhhhhhhHHHHHHhc--CCcceEccccCC
Confidence            95          246899999983  999999999974

>PHA02768 hypothetical protein; Provisional

Probab=98.87  E-value=6.6e-10  Score=78.49  Aligned_cols=44  Identities=14%  Similarity=0.368  Sum_probs=28.4

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHH
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWR  314 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~  314 (375)
                      .|+|+.||            |.|+..++|.+|+|+|+  ++|+|..|++.|.+.+.|+
T Consensus         5 ~y~C~~CG------------K~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICG------------EIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhC------------CeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            36666666            66666666666666666  5666666666666655543

>PHA00733 hypothetical protein

Probab=98.78  E-value=3.8e-09  Score=89.05  Aligned_cols=83  Identities=14%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             CCCceecCcccccccCchHHhhc--ccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          210 GPTQFSCPVCCKTFNRYNNMQMH--MWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       210 g~kp~~C~~C~k~F~~~~~L~~H--~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      ..+++.|.+|.+.|.....|..+  ++.|..             ..+.++|.|..|+            +.|.....|..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-------------~~~~kPy~C~~Cg------------k~Fss~s~L~~   91 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLT-------------SKAVSPYVCPLCL------------MPFSSSVSLKQ   91 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcc-------------cCCCCCccCCCCC------------CcCCCHHHHHH
Confidence            35689999999999988887766  222210             0346789999999            99999999999


Q ss_pred             HHHhhcCCCccccccccccccChhhHHHHHHh
Q 040794          288 HYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       288 H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      |+++|  .++|.|..|+++|.....|..|+..
T Consensus        92 H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~  121 (128)
T PHA00733         92 HIRYT--EHSKVCPVCGKEFRNTDSTLDHVCK  121 (128)
T ss_pred             HHhcC--CcCccCCCCCCccCCHHHHHHHHHH
Confidence            99987  4689999999999999999999874

>PHA02768 hypothetical protein; Provisional

Probab=98.69  E-value=7e-09  Score=73.32  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             ccccccccccccChhhHHHHHHhcCCCeee-ecCcccCChHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICGSDFKHKRSLK  339 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cgk~F~~~~~L~  339 (375)
                      -|.|++|||.|++..+|..|+++|.++|+| .|+|.|.+++.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcCCcccCCcccceecccceeE
Confidence            489999999999999999999999999999 9999999988774

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.60  E-value=2.6e-08  Score=60.10  Aligned_cols=26  Identities=38%  Similarity=0.892  Sum_probs=24.2

Q ss_pred             HHHHHHHhhcCCCccccccccccccC
Q 040794          284 TLQTHYKRKHGIKPFMCRKCGKAFAV  309 (375)
Q Consensus       284 ~L~~H~r~H~gekpy~C~~Cgk~F~~  309 (375)
                      +|.+|+++|+|+|||.|+.|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58999999999999999999999974

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.46  E-value=4e-08  Score=95.32  Aligned_cols=78  Identities=21%  Similarity=0.416  Sum_probs=61.0

Q ss_pred             eecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKH  293 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~  293 (375)
                      |.|..|...|...-.|..|.-..                .-..-|.|+.|+            |.|....+|..|.|.|.
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~R----------------IV~vEYrCPEC~------------KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPR----------------IVHVEYRCPECD------------KVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCe----------------eEEeeecCCccc------------ccccCchhhhhhhcccC
Confidence            99999999999999999998533                222669999999            99999999999999984


Q ss_pred             C--------CC-------------------------ccccccccccccChhhHHHHHHh
Q 040794          294 G--------IK-------------------------PFMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       294 g--------ek-------------------------py~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      -        ..                         -|.|..|+|.|.+...|+.|+-+
T Consensus       320 PR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlt  378 (500)
T KOG3993|consen  320 PRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLT  378 (500)
T ss_pred             CchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHh
Confidence            2        11                         26677777777777777777543

>PHA00732 hypothetical protein

Probab=98.16  E-value=8.3e-07  Score=68.31  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=33.7

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHh-hcCCCccccccccccccChhhHHHHHHhc
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKR-KHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~-H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +|.|..|+            +.|.....|..|++. |+   ++.|..||++|.   .|..|.++.
T Consensus         1 py~C~~Cg------------k~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICG------------FTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCC------------CccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            47788888            888888888888874 54   357888888887   466777654

>PHA00616 hypothetical protein

Probab=98.12  E-value=1.1e-06  Score=59.32  Aligned_cols=33  Identities=18%  Similarity=0.539  Sum_probs=28.2

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCCCCCCCCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                      ||+| .||+.|..++.|.+|++. |+|++++.|+-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCCCccceeE
Confidence            6888 899999999999999988 77888888863

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.06  E-value=8.3e-07  Score=86.34  Aligned_cols=81  Identities=20%  Similarity=0.452  Sum_probs=68.9

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhcC----------C----
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCG----------K----  322 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~----------k----  322 (375)
                      -|.|..|.            -.|.+.-.|.+|.-....---|+|++|+|.|.-..+|-.|.+.|.          .    
T Consensus       267 dyiCqLCK------------~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~  334 (500)
T KOG3993|consen  267 DYICQLCK------------EKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQ  334 (500)
T ss_pred             HHHHHHHH------------HhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhh
Confidence            48999998            889999999999765555556999999999999999999988551          1    


Q ss_pred             ---------------------Ceee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          323 ---------------------LWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       323 ---------------------~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                                           .|.| .|+|.|.+...|++|+-+||...
T Consensus       335 ~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  335 AVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                                 3899 99999999999999999977543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.06  E-value=6.3e-07  Score=54.01  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=22.9

Q ss_pred             CCCccccccCCCceecCcccccccC
Q 040794          201 IPTPSQILIGPTQFSCPVCCKTFNR  225 (375)
Q Consensus       201 l~~h~~~h~g~kp~~C~~C~k~F~~  225 (375)
                      |..|+++|+|++||.|++|++.|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            6789999999999999999999964

...

>PHA00616 hypothetical protein

Probab=97.78  E-value=1e-05  Score=54.59  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=33.8

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccccccccc
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFA  308 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~  308 (375)
                      +|+|..||            +.|..++.|.+|++.|+|++++.|..--..|.
T Consensus         1 pYqC~~CG------------~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f~   40 (44)
T PHA00616          1 MYQCLRCG------------GIFRKKKEVIEHLLSVHKQNKLTLEYFYIYFR   40 (44)
T ss_pred             CCccchhh------------HHHhhHHHHHHHHHHhcCCCccceeEEEEEEE
Confidence            47899999            99999999999999999999998876555554

>PHA00732 hypothetical protein

Probab=97.61  E-value=5.3e-05  Score=58.34  Aligned_cols=46  Identities=22%  Similarity=0.489  Sum_probs=40.5

Q ss_pred             ccccccccccccChhhHHHHHHhcCCCeee-ecCcccCChHHHHHHHHHh
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICGSDFKHKRSLKDHIKAF  345 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cgk~F~~~~~L~~H~r~~  345 (375)
                      ||.|..||+.|.+...|+.|++.+..++.| .||++|.   .|..|++++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhhccc
Confidence            689999999999999999999964446799 9999998   589999874

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.43  E-value=0.00012  Score=42.48  Aligned_cols=21  Identities=43%  Similarity=1.023  Sum_probs=13.7

Q ss_pred             eee-ecCcccCChHHHHHHHHH
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |.| .|++.|..+..|++|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            456 666666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.38  E-value=9.9e-05  Score=42.76  Aligned_cols=22  Identities=27%  Similarity=0.845  Sum_probs=15.7

Q ss_pred             cccccccccccChhhHHHHHHh
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      |.|..|++.|..+..|..|+++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.26  E-value=0.00025  Score=40.99  Aligned_cols=23  Identities=35%  Similarity=0.966  Sum_probs=15.5

Q ss_pred             eee-ecCcccCChHHHHHHHHHhC
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      |.| +|++.|..+..|++|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567 77777777777777777755

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.25  E-value=0.00035  Score=49.73  Aligned_cols=46  Identities=28%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             cccccccccccChhhHHHHHHh-c---CCCeee-ecCcccCChHHHHHHHHHhC
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKN-C---GKLWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~-h---~k~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      |.|+.|++. .....|..|... |   .+.+.| +|...+.  .+|.+|++.+|
T Consensus         3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            444444442 223344444432 2   233444 4544333  25555555544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.13  E-value=0.00011  Score=69.39  Aligned_cols=50  Identities=28%  Similarity=0.586  Sum_probs=38.1

Q ss_pred             CCcccccc--ccccccChhhHHHHHHh-------c--------------CCCeee-ecCcccCChHHHHHHHHH
Q 040794          295 IKPFMCRK--CGKAFAVRGDWRTHEKN-------C--------------GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       295 ekpy~C~~--Cgk~F~~~~~L~~H~k~-------h--------------~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +|||+|++  |.|+++....|+-|+.-       |              .|||.| .|+|+|+....|+-|++.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence            47777765  77777777777777651       1              388999 899999999999888763

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.02  E-value=0.00037  Score=41.96  Aligned_cols=24  Identities=25%  Similarity=0.643  Sum_probs=16.3

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      +|.| .|++.|.....|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4667 67777777777777776643

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.00  E-value=0.00058  Score=54.03  Aligned_cols=76  Identities=18%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             ccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc-CCCeee-ecCcccCChH
Q 040794          259 PCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC-GKLWYC-ICGSDFKHKR  336 (375)
Q Consensus       259 ~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-~k~~~C-~Cgk~F~~~~  336 (375)
                      +|..|+            ..|.....|..|++..++...-    ....+.....+..+++.- ...+.| .|++.|....
T Consensus         1 ~C~~C~------------~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~   64 (100)
T PF12756_consen    1 QCLFCD------------ESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSRE   64 (100)
T ss_dssp             ----------------------------------------------------------------SSEEBSSSS-EESSHH
T ss_pred             Cccccc------------cccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHH
Confidence            488898            8899999999999766553311    122222444444454433 447999 9999999999


Q ss_pred             HHHHHHHHhCCCCC
Q 040794          337 SLKDHIKAFGNGHA  350 (375)
Q Consensus       337 ~L~~H~r~~H~ge~  350 (375)
                      .|..||+.++....
T Consensus        65 ~l~~Hm~~~~H~~~   78 (100)
T PF12756_consen   65 ALQEHMRSKHHKKR   78 (100)
T ss_dssp             HHHHHHHHTTTTC-
T ss_pred             HHHHHHcCccCCCc
Confidence            99999998543333

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.97  E-value=0.00076  Score=47.97  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=11.7

Q ss_pred             eecCcccccccCchHHhhccc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMW  234 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~  234 (375)
                      |.|+.|++. .....|..|..
T Consensus         3 f~CP~C~~~-~~~~~L~~H~~   22 (54)
T PF05605_consen    3 FTCPYCGKG-FSESSLVEHCE   22 (54)
T ss_pred             cCCCCCCCc-cCHHHHHHHHH
Confidence            566666663 33455666655

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.65  E-value=0.0011  Score=52.40  Aligned_cols=73  Identities=23%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             ecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC
Q 040794          215 SCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG  294 (375)
Q Consensus       215 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g  294 (375)
                      +|..|+..|.....|..|+...++                   +... ..            +.+.....|..+++... 
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~-------------------~~~~-~~------------~~l~~~~~~~~~~~~~~-   47 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHG-------------------FDIP-DQ------------KYLVDPNRLLNYLRKKV-   47 (100)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccccccccccccccccccccccc-------------------cccc-cc------------ccccccccccccccccc-
Confidence            589999999999999999974321                   1111 11            22333344444443322 


Q ss_pred             CCccccccccccccChhhHHHHHHhc
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      ...+.|..|++.|.....|..||+.+
T Consensus        48 ~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   48 KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            23689999999999999999999853

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.61  E-value=0.0012  Score=37.95  Aligned_cols=23  Identities=35%  Similarity=0.840  Sum_probs=15.9

Q ss_pred             cccccccccccChhhHHHHHHhc
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |.|..|++.|.++..|+.|++++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            57788888888888888887653

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.50  E-value=0.0013  Score=39.50  Aligned_cols=24  Identities=33%  Similarity=0.710  Sum_probs=22.9

Q ss_pred             ceecCcccccccCchHHhhccccc
Q 040794          213 QFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       213 p~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      +|.|..|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            589999999999999999999988

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.37  E-value=0.0014  Score=62.05  Aligned_cols=26  Identities=31%  Similarity=0.761  Sum_probs=23.2

Q ss_pred             cCCCceecCc--ccccccCchHHhhccc
Q 040794          209 IGPTQFSCPV--CCKTFNRYNNMQMHMW  234 (375)
Q Consensus       209 ~g~kp~~C~~--C~k~F~~~~~L~~H~~  234 (375)
                      .++|||+|++  |.|.+.....|+-|+.
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhh
Confidence            3469999998  9999999999999985

>PRK04860 hypothetical protein; Provisional

Probab=96.14  E-value=0.0025  Score=55.72  Aligned_cols=40  Identities=25%  Similarity=0.691  Sum_probs=33.5

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChh
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRG  311 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~  311 (375)
                      -+|.|. |+            +   ...++.+|.++|+|+++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~------------~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQ------------E---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CC------------C---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            468897 87            5   5678899999999999999999999887654

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.12  E-value=0.0028  Score=62.70  Aligned_cols=53  Identities=23%  Similarity=0.298  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCCCCCCcCCCCccc--cccCC--CceecC--cccccccCchHHhhccccc
Q 040794          184 DSSAGYPFNRLNKGQYWIPTPSQ--ILIGP--TQFSCP--VCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~~h~~--~h~g~--kp~~C~--~C~k~F~~~~~L~~H~~~H  236 (375)
                      ....+..|...+....+|.+|.+  .|+++  +++.|+  .|++.|.+...+..|..+|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc
Confidence            46778888888899999999999  89999  999999  7999999999999999888

>smart00355 ZnF_C2H2 zinc finger

Probab=95.90  E-value=0.0053  Score=35.69  Aligned_cols=20  Identities=45%  Similarity=0.967  Sum_probs=11.6

Q ss_pred             ee-ecCcccCChHHHHHHHHH
Q 040794          325 YC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       325 ~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      .| .|++.|.....|..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHH
Confidence            45 556666666666666554

>smart00355 ZnF_C2H2 zinc finger

Probab=95.78  E-value=0.0068  Score=35.22  Aligned_cols=23  Identities=26%  Similarity=0.765  Sum_probs=20.8

Q ss_pred             cccccccccccChhhHHHHHHhc
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |.|..|+++|.....|..|+++|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            68999999999999999998753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.52  E-value=0.015  Score=40.38  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=20.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKP  297 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekp  297 (375)
                      ....+..|++|+            ..+.+..+|.+|+.++++.||
T Consensus        20 ~S~~PatCP~C~------------a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICG------------AVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--------------EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcch------------hhccchhhHHHHHHHHhcccC
Confidence            334667788888            778888888888887777775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.83  E-value=0.015  Score=40.33  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=13.6

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      +.|-.| +|+..+.+..+|++|+.+.|
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHh
Confidence            456666 66666667777777766643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=94.70  E-value=0.019  Score=50.28  Aligned_cols=31  Identities=23%  Similarity=0.524  Sum_probs=15.7

Q ss_pred             eeeecCcccCChHHHHHHHHHhCCCCCCCCCCCCC
Q 040794          324 WYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFE  358 (375)
Q Consensus       324 ~~C~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~~  358 (375)
                      |.|.|++   ....+++|.++ |+|+++|.|..|.
T Consensus       120 Y~C~C~~---~~~~~rrH~ri-~~g~~~YrC~~C~  150 (160)
T PRK04860        120 YRCKCQE---HQLTVRRHNRV-VRGEAVYRCRRCG  150 (160)
T ss_pred             EEcCCCC---eeCHHHHHHHH-hcCCccEECCCCC
Confidence            4444444   44445555555 4555555555553

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.46  E-value=0.019  Score=33.62  Aligned_cols=23  Identities=30%  Similarity=0.791  Sum_probs=21.3

Q ss_pred             eecCcccccccCchHHhhccccc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      |.|.+|++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.33  E-value=0.028  Score=32.88  Aligned_cols=21  Identities=38%  Similarity=1.113  Sum_probs=14.0

Q ss_pred             eee-ecCcccCChHHHHHHHHH
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |.| +|++.|.....|+.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            556 677777777777777654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.21  E-value=0.036  Score=32.20  Aligned_cols=22  Identities=32%  Similarity=0.612  Sum_probs=13.9

Q ss_pred             eee-ecCcccCChHHHHHHHHHhC
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      |.| .|+.... +..|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            567 6777666 677777777755

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.56  E-value=0.098  Score=55.18  Aligned_cols=20  Identities=20%  Similarity=0.551  Sum_probs=12.4

Q ss_pred             ccccccccccChhhHHHHHH
Q 040794          299 MCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       299 ~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      .|..|...|.....|.+|++
T Consensus       184 ~C~~C~~~fld~~el~rH~~  203 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLR  203 (669)
T ss_pred             cchhhhhhhccHHHHHHhhc
Confidence            56666666666666666655

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.19  E-value=0.054  Score=32.52  Aligned_cols=23  Identities=35%  Similarity=0.670  Sum_probs=21.1

Q ss_pred             eecCcccccccCchHHhhccccc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      |-|..|++.|.....|..|+++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999999754

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.01  E-value=0.029  Score=55.40  Aligned_cols=72  Identities=19%  Similarity=0.320  Sum_probs=60.8

Q ss_pred             CceecCcccccccCchHHhhccc--ccCCCCCCCCCCcCCCCCCCC--cccccC--CCCCCCCCCCCCCCCcccCCHHHH
Q 040794          212 TQFSCPVCCKTFNRYNNMQMHMW--GHGSQYRKGPESLRGTQPTGM--LRLPCY--CCAPGCRNNIDHPRAKPLKDFRTL  285 (375)
Q Consensus       212 kp~~C~~C~k~F~~~~~L~~H~~--~H~~~~~~~~~~~~~~~~~~~--~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L  285 (375)
                      .++.|..|...|.....|..|.+  .|                +++  +++.|.  .|+            +.|.+...+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h----------------~~~~~~~~~~p~~~~~------------~~~~~~~~~  339 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNH----------------SGESLKPFSCPYSLCG------------KLFSRNDAL  339 (467)
T ss_pred             cCCCCccccCCcccccccccccccccc----------------ccccCCceeeeccCCC------------ccccccccc
Confidence            57999999999999999999999  78                777  899999  799            999999999


Q ss_pred             HHHHHhhcCCCcccccc--ccccccChh
Q 040794          286 QTHYKRKHGIKPFMCRK--CGKAFAVRG  311 (375)
Q Consensus       286 ~~H~r~H~gekpy~C~~--Cgk~F~~~~  311 (375)
                      ..|..+|++.+++.|..  |.+.+....
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         340 KRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCcccccCCCccccccccCcccccccc
Confidence            99999999988877743  555554433

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.77  E-value=0.037  Score=33.24  Aligned_cols=21  Identities=38%  Similarity=0.960  Sum_probs=13.3

Q ss_pred             eee-ecCcccCChHHHHHHHHH
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |.| .|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            556 666666666666666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=90.59  E-value=0.15  Score=56.99  Aligned_cols=114  Identities=21%  Similarity=0.329  Sum_probs=83.0

Q ss_pred             cCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhc--
Q 040794          216 CPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKH--  293 (375)
Q Consensus       216 C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~--  293 (375)
                      |..|+..+.++..+..|+..-.               +-.+-+.|+.|+            ..|+....|..|+|..+  
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~---------------S~~kt~~cpkc~------------~~yk~a~~L~vhmRskhp~  491 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLH---------------SFFKTLKCPKCN------------WHYKLAQTLGVHMRSKHPE  491 (1406)
T ss_pred             ccchhhhhhhhcccccceeeee---------------cccccccCCccc------------hhhhhHHHhhhcccccccc
Confidence            4455666666666666665322               334779999999            99999999999999821  


Q ss_pred             -----------------------CCCccccccccccccChhhHHHHHHh--c-----------C----------------
Q 040794          294 -----------------------GIKPFMCRKCGKAFAVRGDWRTHEKN--C-----------G----------------  321 (375)
Q Consensus       294 -----------------------gekpy~C~~Cgk~F~~~~~L~~H~k~--h-----------~----------------  321 (375)
                                             +.+||.|..|..+++.+..|.+|+..  |           +                
T Consensus       492 ~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~  571 (1406)
T KOG1146|consen  492 SQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPE  571 (1406)
T ss_pred             cchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcc
Confidence                                   23689999999999999999999861  0           0                


Q ss_pred             ----------------CCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCC
Q 040794          322 ----------------KLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       322 ----------------k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                                      -.|.| +|+..-+-..+|+.||..-+.-..|.-|..
T Consensus       572 ~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq  623 (1406)
T KOG1146|consen  572 EAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQ  623 (1406)
T ss_pred             cccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhh
Confidence                            03889 899998888899999876544444444443

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.26  E-value=0.21  Score=29.53  Aligned_cols=20  Identities=35%  Similarity=0.667  Sum_probs=10.1

Q ss_pred             ccccccccccChhhHHHHHHh
Q 040794          299 MCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       299 ~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      .|+.||+.| ....|..|+++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHh
Confidence            455555555 34455555443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.85  E-value=0.22  Score=28.77  Aligned_cols=21  Identities=19%  Similarity=0.612  Sum_probs=14.3

Q ss_pred             cccccccccccChhhHHHHHHh
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      |+|..|+.+.. +..|..|+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            67888887776 7778888775

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.82  E-value=0.15  Score=49.13  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=12.6

Q ss_pred             ccCChHHHHHHHHHhCC
Q 040794          331 DFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       331 ~F~~~~~L~~H~r~~H~  347 (375)
                      .|..-..|..|+...|.
T Consensus       290 vf~~~~el~~h~~~~h~  306 (493)
T COG5236         290 VFPYHTELLEHLTRFHK  306 (493)
T ss_pred             EeccHHHHHHHHHHHhh
Confidence            57777788888877663

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=88.67  E-value=0.34  Score=28.66  Aligned_cols=20  Identities=40%  Similarity=0.778  Sum_probs=17.1

Q ss_pred             eee-ecCcccCChHHHHHHHHH
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      ..| .||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            468 999999 67789999876

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.72  E-value=0.41  Score=30.19  Aligned_cols=22  Identities=32%  Similarity=0.847  Sum_probs=16.1

Q ss_pred             Ceee-ecCcccCChHHHHHHHHH
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +|.| .|++.|.....|..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            5677 788877777777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.64  E-value=0.49  Score=50.10  Aligned_cols=81  Identities=22%  Similarity=0.356  Sum_probs=55.9

Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc------cccccChhhHHHHHHhcCCCe---eeec
Q 040794          258 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC------GKAFAVRGDWRTHEKNCGKLW---YCIC  328 (375)
Q Consensus       258 ~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C------gk~F~~~~~L~~H~k~h~k~~---~C~C  328 (375)
                      -.|..|.            ..|.....|.+|++.++    |.|..|      +-.|..-..|..|-+.+...-   .|.|
T Consensus       183 p~C~~C~------------~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~~~C~~  246 (669)
T KOG2231|consen  183 PLCKFCH------------ERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEEEFCRT  246 (669)
T ss_pred             ccchhhh------------hhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCcccccccccc
Confidence            3599998            89999999999998776    677777      355667778888877532111   2323


Q ss_pred             C---cccCChHHHHHHHHHhCCCCCCCCCC
Q 040794          329 G---SDFKHKRSLKDHIKAFGNGHAAYGID  355 (375)
Q Consensus       329 g---k~F~~~~~L~~H~r~~H~ge~~y~C~  355 (375)
                      .   ..|.....|++|.+ ++.-++.|.|+
T Consensus       247 ~~f~~~~~~ei~lk~~~~-~~~~e~~~~~~  275 (669)
T KOG2231|consen  247 KKFYVAFELEIELKAHNR-FIQHEKCYICR  275 (669)
T ss_pred             ceeeehhHHHHHHHhhcc-ccchheeccCC
Confidence            3   34455667777776 36677888886

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=86.57  E-value=0.5  Score=43.85  Aligned_cols=47  Identities=28%  Similarity=0.600  Sum_probs=33.3

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHH
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      -|.|..||..+            + +..|.+|+-+-++ .-|.|..||+.|.+ .+.+.|.+
T Consensus         3 ~FtCnvCgEsv------------K-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESV------------K-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhc------------c-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            47888888332            2 3466778777776 66888888888887 66777766

>smart00451 ZnF_U1 U1-like zinc finger

Probab=85.37  E-value=0.47  Score=29.87  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.5

Q ss_pred             ccccccccccccChhhHHHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      +|.|..|++.|.....|..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5889999999999999999976

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=84.49  E-value=0.88  Score=44.04  Aligned_cols=23  Identities=39%  Similarity=0.817  Sum_probs=20.7

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHh
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKR  291 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~  291 (375)
                      ++.|-.|.            |.|..+.+|+.|||.
T Consensus       195 r~~CLyCe------------kifrdkntLkeHMrk  217 (423)
T KOG2482|consen  195 RLRCLYCE------------KIFRDKNTLKEHMRK  217 (423)
T ss_pred             hheeeeec------------cccCCcHHHHHHHHh
Confidence            47899999            999999999999985

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=83.44  E-value=0.27  Score=55.16  Aligned_cols=109  Identities=13%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             eecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKH  293 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~  293 (375)
                      ..|.+|...|.....+..|-+.-..          -.-..|  -+.|..|.            +.|.-...+. |+   -
T Consensus      1229 l~~~~~e~~f~~~~~~~~~a~~~~~----------~~~~sG--e~~c~~~~------------~~~~~~~~~~-~l---~ 1280 (1406)
T KOG1146|consen 1229 LLPNALEQPFPQEPEPTATAPPKPP----------ELPASG--EGECGAVD------------ELLTPSFGIS-TL---D 1280 (1406)
T ss_pred             ccHHhhhcCccCcccccccCCCCCC----------cCcCCC--cchhhhcc------------ccccCcccee-ec---c
Confidence            5677788888877776655432200          000122  25677777            4444433333 22   2


Q ss_pred             CCCccccccccccccChhhHHHHHHhc------------------CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          294 GIKPFMCRKCGKAFAVRGDWRTHEKNC------------------GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       294 gekpy~C~~Cgk~F~~~~~L~~H~k~h------------------~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      ...+|.|..|...|.....|..|.+..                  ...|.| .|...|.....|..|||+-+...|
T Consensus      1281 ~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~c~~c~~~~~~~~alqihm~~~~~~~k 1356 (1406)
T KOG1146|consen 1281 VTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYHCLACEVLLSGREALQIHMRSSAHRRK 1356 (1406)
T ss_pred             cchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCccccccchHHHhhcchhHHHHHHHHHhhhccc
Confidence            346788999999999888888887631                  122449 999999999999999998655443

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=81.45  E-value=2.9  Score=40.60  Aligned_cols=50  Identities=20%  Similarity=0.438  Sum_probs=42.5

Q ss_pred             ccccccccccccChhhHHHHHHh--cCC----------------------------------------------------
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEKN--CGK----------------------------------------------------  322 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k~--h~k----------------------------------------------------  322 (375)
                      .++|-.|.|.|..+..|+.||+.  |.+                                                    
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            48999999999999999999983  211                                                    


Q ss_pred             --C--eee-ecCcccCChHHHHHHHHHhC
Q 040794          323 --L--WYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       323 --~--~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                        +  -+| .|.+..-....|..||++.|
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHH
Confidence              1  389 89999999999999999888

>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []

Probab=80.49  E-value=0.45  Score=31.75  Aligned_cols=23  Identities=22%  Similarity=0.041  Sum_probs=17.0

Q ss_pred             cHHHHhhhccccccccceeeeec
Q 040794          128 STATAALHHEDDDETTAVTVALH  150 (375)
Q Consensus       128 ~~~q~~~~~e~~~e~~~~~v~l~  150 (375)
                      +++|+.+|+++|.|++.+.++++
T Consensus        19 ~~~Qk~ly~dvm~Eny~~l~slG   41 (41)
T PF01352_consen   19 DPAQKNLYRDVMLENYRNLVSLG   41 (41)
T ss_dssp             -HHHHHHHHHHHHHTTTS---S-
T ss_pred             cceecccchhHHHHhhcccEecC
Confidence            57899999999999999998874

It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	375
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%)
Query: 207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPG 266
           +  G   ++CP C K+F+R +++  H   H                TG     C    P 
Sbjct: 15  LEPGEKPYACPECGKSFSRSDHLAEHQRTH----------------TGEKPYKC----PE 54
Query: 267 CRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKN-CGKLWY 325
           C         K   D + L  H +   G KP+ C +CGK+F+ R + R H++   G+  Y
Sbjct: 55  C--------GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPY 106
Query: 326 CI--CGSDFKHKRSLKDHIKA 344
               CG  F     L+ H + 
Sbjct: 107 ACPECGKSFSQLAHLRAHQRT 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	8e-04

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 23/107 (21%)

Query: 210 GPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRN 269
           G ++F C  C   ++    + +HM                   TG  R   +        
Sbjct: 16  GASKFRCKDCSAAYDTLVELTVHM-----------------NETGHYRDDNHETDNNN-- 56

Query: 270 NIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTH 316
               P+       R+L     ++   K   C  CG +F    D   H
Sbjct: 57  ----PKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 294 GIKPFMCRKCGKAFAVRGD----WRTHEKNCGKLWY-C-ICGSDFKHKRSLKDHIK 343
           G     C  CG     +       R H +    L + C  CG  F+   S+  H  
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 8/46 (17%)

Query: 280 KDFR---TLQTHYKRKH----GIKPFMCRKCGKAFAVRGDWRTHEK 318
              R   +L  H +RKH        F C  CGK F        H  
Sbjct: 15  FTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 284 TLQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTHEKN----CGKLWYC-ICGSDFKHKRS 337
           +  +   R H G KP+ C  C   F   G  + H           ++C  C +    K  
Sbjct: 2   SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 338 LKDHIK 343
           L  H++
Sbjct: 61  LGVHLR 66

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 284 TLQTHYKRKHG--IKPFMCRKCGKAFAVRGDWRTHEKN 319
           T++ H  +KH   +  F C  C    A + D   H + 
Sbjct: 30  TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 14/62 (22%)

Query: 291 RKH-GIKPFMCRKCGKAFAVRGD----WRTH--EK--NCGKLWYCICGSDFKHKRSLKDH 341
                  P  C +C  + + +       R H  ++   C       C  D K   +L  H
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY-----CSFDTKQPSNLSKH 56

Query: 342 IK 343
           +K
Sbjct: 57  MK 58

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 39/143 (27%), Positives = 49/143 (34%), Gaps = 48/143 (33%)

Query: 216 CPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPR 275
           C    + F     + +HM  H                TG    P  C   GCR       
Sbjct: 42  CSRELRPFKAQYMLVVHMRRH----------------TG--EKPHKCTFEGCR------- 76

Query: 276 AKPLKDFRT---LQTHYKRKH-GIKPFMC--RKCGKAFAVRGD-----WRTH--EK--NC 320
               K +     L+TH  R H G KP+MC    C KAF+   D      RTH  EK   C
Sbjct: 77  ----KSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131

Query: 321 GKLWYCICGSDFKHKRSLKDHIK 343
                  C   +    SL+ H+K
Sbjct: 132 K---LPGCTKRYTDPSSLRKHVK 151

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 34/109 (31%)

Query: 214 FSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDH 273
                C KT+ + ++++ H+  H                TG    P +C   GC      
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTH----------------TG--EKPYHCDWDGCG----- 44

Query: 274 PRAKPLKDFR---TLQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTHEK 318
                   F     L  HY RKH G +PF C+KC +AF+       H K
Sbjct: 45  ------WKFARSDELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMK 86

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 280 KDFR---TLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTH------EK--NCGKLWYCIC 328
           K FR    ++ H    HG +  +C +CGKAF      + H      EK   C    +  C
Sbjct: 15  KMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT---FEGC 70

Query: 329 GSDFKHKRSLKDH 341
           G  F    +L+ H
Sbjct: 71  GKRFSLDFNLRTH 83

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 280 KDFR---TLQTHYKRKH-GIKPFMCRKCGKAFAVRGD----WRTHEKNCGKLWYCI-CGS 330
           K FR    L  H K  H G KP+ C  CG  F  +       R+H+ + GK + C  CG 
Sbjct: 15  KIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73

Query: 331 DFKHKRSLKDHIK 343
            F     L  HIK
Sbjct: 74  GFSRPDHLNGHIK 86

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 285 LQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTHEK 318
           L  HY RKH G KPF C  C ++F+       H K
Sbjct: 63  LTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMK 96

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 284 TLQTHYKRKH-GIKPFMCRKCGKAFAVRGD----WRTH--EKNCGKLWYCI-CGSDFKHK 335
           +  +   R H G KP+ C  C K F  +      ++ +         + C  CG  F  +
Sbjct: 2   SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60

Query: 336 RSLKDH 341
            ++  H
Sbjct: 61  NTMARH 66

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 14/67 (20%)

Query: 285 LQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTH-----EK--NCGKLWYCICGSDFKHKR 336
           L TH  R H G KPF C  CG+ FA   + + H            K              
Sbjct: 19  LTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK-----VEELLSKNY 72

Query: 337 SLKDHIK 343
            L++ + 
Sbjct: 73  HLENEVA 79

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 285 LQTHYKRKH-GIKPFMCRKCGKAFAVRGD----WRTH--EK--NCGKLWYCICGSDFKHK 335
           L+ H +R+H G+KPF C+ C + F+         RTH  EK  +C       C   F   
Sbjct: 54  LKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWP---SCQKKFARS 109

Query: 336 RSLKDHIK 343
             L  H  
Sbjct: 110 DELVRHHN 117

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 280 KDFR---TLQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTHEKNCG-----KLWYCI-CG 329
           K F     L+ H  RKH G KPF C KCGK +  + +   HE         +++ C  C 
Sbjct: 15  KKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ 73

Query: 330 SDFKHKRSLKDH 341
             F+ +  L+ H
Sbjct: 74  ETFRRRMELRLH 85

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 285 LQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTH------EK--NCGKLWYCICGSDFKHK 335
              H        KP+ C +C  +F  +G+  +H      EK   C       CG+ F   
Sbjct: 5   HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI-----CGAQFNRP 58

Query: 336 RSLKDH 341
            +LK H
Sbjct: 59  ANLKTH 64

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 285 LQTHYKRKH-GIKPFMCRKCGKAFAVRGDWRTHEK 318
           L  H  R H G KPF CR C + F+      TH +
Sbjct: 37  LTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 267 CRNNIDHPRAKP-LKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWY 325
            R  +      P L D  +          I  F+C  C   F+     + H +       
Sbjct: 43  IRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV 102

Query: 326 C-ICGSDFKHKRSLKDHIKAFGNG 348
           C +C  +F    S  DH+    N 
Sbjct: 103 CPVCKKEFTSTDSALDHVCKKHNI 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.9
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.81
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.73
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.65
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.65
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.61
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.61
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.61
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.59
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.58
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.56
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.55
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.55
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.54
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.53
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.51
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.49
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.48
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.45
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.43
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.41
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.39
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.39
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.38
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.37
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.35
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.33
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.33
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.3
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.29
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.29
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.27
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.27
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.24
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.23
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.21
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.2
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.19
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.09
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.01
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.01
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.0
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.0
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.0
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.99
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.98
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.98
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.97
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.97
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.96
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.95
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.95
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.94
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.93
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.92
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.89
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.85
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.85
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.85
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.84
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.84
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.84
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.82
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.82
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.81
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.81
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.8
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.8
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.79
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.79
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.79
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.77
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.77
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.77
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.77
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.76
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.76
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.76
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.76
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.74
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.74
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.74
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.74
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.73
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.72
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.72
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.72
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.72
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.7
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.7
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.69
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.68
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.66
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.63
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.63
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.61
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.55
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.55
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.51
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.46
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.41
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.34
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.33
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.31
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.27
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.25
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.25
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.22
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.21
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.18
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.17
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.14
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.13
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.11
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.1
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.08
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.07
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.06
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.05
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.04
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.03
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.0
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.99
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.97
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.22
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.97
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.97
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.96
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.96
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.95
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.94
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.18
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.93
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.93
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.9
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.89
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.86
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.85
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.84
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.82
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.99
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.75
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.92
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.72
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.71
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.71
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.7
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.67
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.64
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.63
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.6
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.59
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.57
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.64
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.59
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.42
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.39
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.37
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.13
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.98
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.4
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.07
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.32
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.24
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.72
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.87
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.7
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	87.68
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.34
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	80.27

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=2.2e-29  Score=224.03  Aligned_cols=151  Identities=24%  Similarity=0.505  Sum_probs=109.7

Q ss_pred             CCCCCCCCCCCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          181 GGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      .+..++.|..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|                .+.++|.|
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C   80 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----------------TGEKPYKC   80 (190)
T ss_dssp             --------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHH----------------HCCCCEEC
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhc----------------CCCCCccC
Confidence            34556777788888888888888888888888888888888888888888888888                56677888


Q ss_pred             CCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHH
Q 040794          261 YCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRS  337 (375)
Q Consensus       261 ~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~  337 (375)
                      ..|+            +.|.....|..|+++|+++++|.|..|++.|.....|..|+++|  +++|.| +|++.|..+..
T Consensus        81 ~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  148 (190)
T 2i13_A           81 PECG------------KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN  148 (190)
T ss_dssp             TTTC------------CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             cccC------------CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHH
Confidence            8888            88888888888888888888888888888888888888888866  678888 78888888888


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCC
Q 040794          338 LKDHIKAFGNGHAAYGIDGFEEE  360 (375)
Q Consensus       338 L~~H~r~~H~ge~~y~C~~~~~~  360 (375)
                      |++|+++ |.++++|+|+.|+..
T Consensus       149 L~~H~~~-H~~~~~~~C~~C~~~  170 (190)
T 2i13_A          149 LHTHQRT-HTGEKPYKCPECGKS  170 (190)
T ss_dssp             HHHHHHH-HHCCCCEECTTTCCE
T ss_pred             HHHHHHh-cCCCCCeECCCCCCc
Confidence            8888887 677788888888753

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=2.8e-29  Score=223.34  Aligned_cols=171  Identities=24%  Similarity=0.497  Sum_probs=138.3

Q ss_pred             cCCCCCChhHhhhcccCCccccCCccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHh
Q 040794          151 IGLPSPSASEMASLLSSSSEISGHDHNGDHGGDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQ  230 (375)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~  230 (375)
                      .+.....+..|...+.....+..|...  .....++.|..|++.|.....|..|+++|.++++|.|..|++.|.....|.
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   94 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR   94 (190)
T ss_dssp             --------------CCSSHHHHHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHH
Confidence            334456677788877777766666532  344567889999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccCh
Q 040794          231 MHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVR  310 (375)
Q Consensus       231 ~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~  310 (375)
                      .|+++|                .+.++|.|..|+            +.|.....|..|+++|++++||.|..|++.|..+
T Consensus        95 ~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  146 (190)
T 2i13_A           95 AHQRTH----------------TGEKPYACPECG------------KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE  146 (190)
T ss_dssp             HHHHHH----------------HTCCCEECTTTC------------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCH
T ss_pred             HHHHhc----------------CCCCCCcCCCCC------------CccCCHHHHHHHHHHhCCCCCeECCCCCcccCCH
Confidence            999999                777899999999            9999999999999999999999999999999999


Q ss_pred             hhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCC
Q 040794          311 GDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       311 ~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      ..|..|+++|  +++|.| +|++.|..+..|++|+++ |.|++||
T Consensus       147 ~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~k~~  190 (190)
T 2i13_A          147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT-HTGKKTS  190 (190)
T ss_dssp             HHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTT-C------
T ss_pred             HHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHh-cCCCCCC
Confidence            9999999987  799999 999999999999999999 8999987

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.92  E-value=1.9e-25  Score=198.45  Aligned_cols=147  Identities=20%  Similarity=0.351  Sum_probs=127.8

Q ss_pred             CCCCCCC--CCCCCCCCCCcCCCCccccccCCCceec--CcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcc
Q 040794          182 GDDSSAG--YPFNRLNKGQYWIPTPSQILIGPTQFSC--PVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLR  257 (375)
Q Consensus       182 ~~~~~~~--~~~~~~~~~~~~l~~h~~~h~g~kp~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~  257 (375)
                      ...++.|  ..|++.|.....|..|+++|.++++|.|  ..|++.|.....|..|+++|                .++++
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h----------------~~~~~   72 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH----------------TGEKN   72 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTT----------------TTCCC
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHc----------------cCCCc
Confidence            3455667  6799999999999999999999999999  88999999999999999999                77788


Q ss_pred             cccC--CCCCCCCCCCCCCCCcccCCHHHHHHHH-Hhh-cCCCcccc--ccccccccChhhHHHHHHhc--CCCeee-e-
Q 040794          258 LPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHY-KRK-HGIKPFMC--RKCGKAFAVRGDWRTHEKNC--GKLWYC-I-  327 (375)
Q Consensus       258 ~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~-r~H-~gekpy~C--~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~-  327 (375)
                      |.|.  .|+            +.|.....|..|+ +.| .++++|.|  ..|++.|.....|..|+++|  +++|.| . 
T Consensus        73 ~~C~~~~C~------------~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~  140 (190)
T 1tf6_A           73 FTCDSDGCD------------LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHE  140 (190)
T ss_dssp             EECCSSSCC------------CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSS
T ss_pred             eeCCCCCCC------------CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            9999  798            9999999999999 667 47889999  88999999999999999987  688999 7 


Q ss_pred             -cCcccCChHHHHHHHHHhCCCCCCCCCCC---CCCC
Q 040794          328 -CGSDFKHKRSLKDHIKAFGNGHAAYGIDG---FEEE  360 (375)
Q Consensus       328 -Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~---~~~~  360 (375)
                       |++.|..++.|++|+++ |.|   |.|..   |+..
T Consensus       141 ~C~k~F~~~~~L~~H~~~-H~~---~~C~~~~~C~~~  173 (190)
T 1tf6_A          141 GCDKRFSLPSRLKRHEKV-HAG---YPCKKDDSCSFV  173 (190)
T ss_dssp             SCCCBCSSHHHHHHHHTS-SCS---CCCCSTTTCCCC
T ss_pred             CCCchhcCHHHHHHHHHH-hCC---CcCCCCCcCCCc
Confidence             99999999999999998 666   88888   7654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=1.4e-24  Score=186.17  Aligned_cols=134  Identities=25%  Similarity=0.456  Sum_probs=123.5

Q ss_pred             CCCCCCCCCCCCCCcCCCCccc---cccCCCceecCcc-----cccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCc
Q 040794          185 SSAGYPFNRLNKGQYWIPTPSQ---ILIGPTQFSCPVC-----CKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGML  256 (375)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~~h~~---~h~g~kp~~C~~C-----~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~  256 (375)
                      ++.|..|++.|.....|..|++   +|.++++|.|.+|     ++.|.....|..|+++|                .+.+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h----------------~~~~   66 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH----------------TGEK   66 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHH----------------HCCC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhc----------------CCCC
Confidence            4668889999999999999998   7999999998753     49999999999999999                7778


Q ss_pred             ccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc--ccccccChhhHHHHH-Hhc--CCCeee-e-
Q 040794          257 RLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK--CGKAFAVRGDWRTHE-KNC--GKLWYC-I-  327 (375)
Q Consensus       257 ~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~-k~h--~k~~~C-~-  327 (375)
                      +|.|..  |+            +.|.....|..|+++|+++++|.|..  |+++|.+...|..|+ ++|  +++|.| + 
T Consensus        67 ~~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~  134 (155)
T 2gli_A           67 PHKCTFEGCR------------KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP  134 (155)
T ss_dssp             CCCCCSTTCC------------CCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCST
T ss_pred             CccCCCCCCC------------CcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCC
Confidence            999985  99            99999999999999999999999998  999999999999999 677  689999 8 


Q ss_pred             -cCcccCChHHHHHHHHHhC
Q 040794          328 -CGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       328 -Cgk~F~~~~~L~~H~r~~H  346 (375)
                       |++.|..++.|++|+++||
T Consensus       135 ~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          135 GCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             TTCCEESSHHHHHHHHHHSC
T ss_pred             CCccccCCHHHHHHHHHhhc
Confidence             9999999999999999954

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.90  E-value=6.6e-25  Score=195.00  Aligned_cols=163  Identities=19%  Similarity=0.297  Sum_probs=139.5

Q ss_pred             CCCh--hHhhhcccCCccccCCccCCCCCCCCCCCC--CCCCCCCCCCcCCCCccccccCCCceecC--cccccccCchH
Q 040794          155 SPSA--SEMASLLSSSSEISGHDHNGDHGGDDSSAG--YPFNRLNKGQYWIPTPSQILIGPTQFSCP--VCCKTFNRYNN  228 (375)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~h~~~h~g~kp~~C~--~C~k~F~~~~~  228 (375)
                      ...+  ..|...+.....+..|...  .....++.|  ..|++.|.....|..|+++|.++++|.|.  .|++.|.....
T Consensus        12 ~~~C~~~~C~~~f~~~~~L~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   89 (190)
T 1tf6_A           12 RYICSFADCGAAYNKNWKLQAHLCK--HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN   89 (190)
T ss_dssp             CCBCSSTTTCCBCSSHHHHHHHHHH--HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHH
T ss_pred             ceeCCCCCCcchhCCHHHHHHHHHh--cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHH
Confidence            3444  3566666666666555421  223456778  78999999999999999999999999999  89999999999


Q ss_pred             Hhhcc-cccCCCCCCCCCCcCCCCCCCCccccc--CCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc--c
Q 040794          229 MQMHM-WGHGSQYRKGPESLRGTQPTGMLRLPC--YCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK--C  303 (375)
Q Consensus       229 L~~H~-~~H~~~~~~~~~~~~~~~~~~~~~~~C--~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~--C  303 (375)
                      |..|+ +.|.               .+.++|.|  ..|+            +.|.....|..|+++|++++||.|..  |
T Consensus        90 l~~H~~~~h~---------------~~~~~~~C~~~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~~~C  142 (190)
T 1tf6_A           90 MKKHFNRFHN---------------IKICVYVCHFENCG------------KAFKKHNQLKVHQFSHTQQLPYECPHEGC  142 (190)
T ss_dssp             HHHHHHTTSS---------------TTTSCCEECSSSSC------------EECSSHHHHHHHHGGGSSSCSSBCCSSSC
T ss_pred             HHHHHHHhcC---------------CCcceeeCCCCCCc------------cccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence            99999 6663               45678999  8899            99999999999999999999999988  9


Q ss_pred             cccccChhhHHHHHHhcCCCeee-e---cCcccCChHHHHHHHHHhCCC
Q 040794          304 GKAFAVRGDWRTHEKNCGKLWYC-I---CGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       304 gk~F~~~~~L~~H~k~h~k~~~C-~---Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      +++|.++..|..|+++|.. |.| .   |++.|..+..|++|+++ |.|
T Consensus       143 ~k~F~~~~~L~~H~~~H~~-~~C~~~~~C~~~f~~~~~l~~H~~~-h~~  189 (190)
T 1tf6_A          143 DKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGKTWTLYLKHVAE-CHQ  189 (190)
T ss_dssp             CCBCSSHHHHHHHHTSSCS-CCCCSTTTCCCCCSCHHHHHHHHTT-CC-
T ss_pred             CchhcCHHHHHHHHHHhCC-CcCCCCCcCCCccccHHHHHHHHHh-hcC
Confidence            9999999999999999866 999 8   99999999999999999 544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=1.7e-23  Score=172.22  Aligned_cols=114  Identities=26%  Similarity=0.501  Sum_probs=107.0

Q ss_pred             cCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHH
Q 040794          209 IGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH  288 (375)
Q Consensus       209 ~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H  288 (375)
                      +|+++|.|.+|++.|.....|..|+++|                .++++|.|..|+            +.|.....|..|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~H   54 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKH----------------TGEKPFECPKCG------------KCYFRKENLLEH   54 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHH----------------SSCCSCBCTTTC------------CBCSSHHHHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhC----------------CCCCCeECCCCC------------chhcCHHHHHHH
Confidence            4678999999999999999999999999                777899999999            999999999999


Q ss_pred             HHh---hcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          289 YKR---KHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       289 ~r~---H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      ++.   |.++++|.|.+|++.|.....|..|+++|  +++|.| +|++.|..+..|++|++..|.+++
T Consensus        55 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           55 EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            995   68899999999999999999999999987  689999 999999999999999998788864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=4.7e-24  Score=180.27  Aligned_cols=110  Identities=22%  Similarity=0.327  Sum_probs=98.0

Q ss_pred             cCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcc
Q 040794          199 YWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKP  278 (375)
Q Consensus       199 ~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~  278 (375)
                      .++..|.++|.|+++|+|.+|++.|.....|..|+++|                +++++|.|..|+            +.
T Consensus         8 ~h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~C~------------k~   59 (133)
T 2lt7_A            8 KHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIH----------------SWEKKYPCRYCE------------KV   59 (133)
T ss_dssp             CCSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHH----------------HCCSCEECSSSS------------CE
T ss_pred             HHHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHc----------------CCCCCeeCCccC------------ee
Confidence            34566778899999999999999999999999999999                788999999999            99


Q ss_pred             cCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--------CCCeee-ecCcccCChH
Q 040794          279 LKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--------GKLWYC-ICGSDFKHKR  336 (375)
Q Consensus       279 f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--------~k~~~C-~Cgk~F~~~~  336 (375)
                      |.....|..|+++|+|++||.|.+||++|.++..|..|++++        .++|.| .|++.|.+..
T Consensus        60 F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           60 FPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             ESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             cccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            999999999999999999999999999999999999999865        256899 8999987654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=180.76  Aligned_cols=128  Identities=22%  Similarity=0.331  Sum_probs=109.6

Q ss_pred             ccCCCceecCcccccccCchHHhhcccc-cCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHH
Q 040794          208 LIGPTQFSCPVCCKTFNRYNNMQMHMWG-HGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQ  286 (375)
Q Consensus       208 h~g~kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~  286 (375)
                      .....+|.|..|++.|.+...|..|+++ |.+...        ........|.|..|+            +.|.....|.
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~--------~~~~~~~~~~C~~C~------------~~f~~~~~l~   79 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE--------QNNHVCYWEECPREG------------KSFKAKYKLV   79 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTT--------CSSCCCCBTTCTTSS------------CCCSSHHHHH
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcc--------cCCccccccCCCCcc------------cccCCHHHHH
Confidence            3455689999999999999999999997 632100        000001238899999            9999999999


Q ss_pred             HHHHhhcCCCcccccc--ccccccChhhHHHHHHhc--CCCeee-e--cCcccCChHHHHHHHHHhCCCCCCCCCCC
Q 040794          287 THYKRKHGIKPFMCRK--CGKAFAVRGDWRTHEKNC--GKLWYC-I--CGSDFKHKRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       287 ~H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h--~k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                      .|+++|+++++|.|..  |++.|.....|..|+++|  +++|.| .  |++.|..+..|.+|+++ |+|++||.|+.
T Consensus        80 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~c~g  155 (155)
T 2rpc_A           80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSSG  155 (155)
T ss_dssp             HHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT-TTSCCCSCSCC
T ss_pred             HHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH-hcCCCCCCCCC
Confidence            9999999999999998  999999999999999987  689999 6  99999999999999998 89999999973

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=1.2e-22  Score=171.63  Aligned_cols=95  Identities=22%  Similarity=0.475  Sum_probs=88.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      .|+++|.|.+|+            +.|.....|..|+++|++++||.|.+||++|.++..|..|+++|  +++|.| +||
T Consensus        18 ~Gek~y~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~   85 (133)
T 2lt7_A           18 DGRVYYICIVCK------------RSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACG   85 (133)
T ss_dssp             TTEEEEEETTTC------------CEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSC
T ss_pred             CCCcCeECCCCC------------CCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCC
Confidence            889999999999            99999999999999999999999999999999999999999987  799999 999


Q ss_pred             cccCChHHHHHHHHHhCCC-----CCCCCCCCCCC
Q 040794          330 SDFKHKRSLKDHIKAFGNG-----HAAYGIDGFEE  359 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~g-----e~~y~C~~~~~  359 (375)
                      +.|..++.|.+|++++|.+     .++|+|+.|+.
T Consensus        86 k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k  120 (133)
T 2lt7_A           86 KSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRS  120 (133)
T ss_dssp             CEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCS
T ss_pred             CCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCc
Confidence            9999999999999997754     25688888864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=1.8e-22  Score=165.07  Aligned_cols=108  Identities=28%  Similarity=0.607  Sum_probs=102.5

Q ss_pred             cCCCceecCc--ccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC--CCCCCCCCCCCCCCCcccCCHHH
Q 040794          209 IGPTQFSCPV--CCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY--CCAPGCRNNIDHPRAKPLKDFRT  284 (375)
Q Consensus       209 ~g~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~  284 (375)
                      +++++|.|..  |++.|.....|..|+++|                .+.++|.|.  .|+            +.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~~~C~------------~~f~~~~~   53 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH----------------TGEKPYQCDFKDCE------------RRFSRSDQ   53 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHH----------------HTTCCEECCSTTCC------------CEESSHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhh----------------CCCCCccCCCCCCc------------CccCCHHH
Confidence            4678999997  999999999999999999                777899999  799            99999999


Q ss_pred             HHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee---ecCcccCChHHHHHHHHH
Q 040794          285 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC---ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       285 L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C---~Cgk~F~~~~~L~~H~r~  344 (375)
                      |..|+++|+++++|.|..|++.|.....|..|+++|  +++|.|   .|++.|..+..|++|+++
T Consensus        54 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            999999999999999999999999999999999987  789999   599999999999999998

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=2.5e-22  Score=165.72  Aligned_cols=114  Identities=30%  Similarity=0.578  Sum_probs=99.1

Q ss_pred             CCCceecC--cccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          210 GPTQFSCP--VCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       210 g~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      .+++|.|+  .|++.|.....|..|+++|.                 .++|.|..|+            +.|.....|..
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-----------------~~~~~C~~C~------------~~f~~~~~l~~   52 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHG-----------------PRVHVCAECG------------KAFVESSKLKR   52 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGGS-----------------CCCEECTTTC------------CEESSHHHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHcC-----------------CCCeECCCCC------------chhCCHHHHHH
Confidence            35689999  89999999999999999882                 3679999999            99999999999


Q ss_pred             HHHhhcCCCcccccc--ccccccChhhHHHHHHhc--CCCeee-e--cCcccCChHHHHHHHHHhCCCCCCCC
Q 040794          288 HYKRKHGIKPFMCRK--CGKAFAVRGDWRTHEKNC--GKLWYC-I--CGSDFKHKRSLKDHIKAFGNGHAAYG  353 (375)
Q Consensus       288 H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h--~k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge~~y~  353 (375)
                      |+++|+++++|.|..  |++.|.....|..|+++|  +++|.| .  |++.|..++.|.+|+++ |+++++++
T Consensus        53 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-H~~~k~~q  124 (124)
T 1ubd_C           53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNNQ  124 (124)
T ss_dssp             HGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHH-HC------
T ss_pred             HHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHH-HcccccCC
Confidence            999999999999986  999999999999999987  799999 5  99999999999999999 78888764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=5.5e-22  Score=169.85  Aligned_cols=127  Identities=20%  Similarity=0.347  Sum_probs=111.6

Q ss_pred             CCceecCcccccccCchHHhhccc---ccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          211 PTQFSCPVCCKTFNRYNNMQMHMW---GHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       211 ~kp~~C~~C~k~F~~~~~L~~H~~---~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      |.+|.|..|++.|.+...|..|++   +|                .+.++|.|..|+++       ...+.|.....|..
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h----------------~~~~~~~C~~c~C~-------~c~~~f~~~~~l~~   57 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIH----------------GERKEFVCHWGGCS-------RELRPFKAQYMLVV   57 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSS----------------SCSSCCCCCBTTCT-------TTTCCCSSHHHHHH
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccC----------------CCCcceeCCCCCcc-------chhhhhhhHHHHHH
Confidence            357999999999999999999998   56                67788998865421       00188999999999


Q ss_pred             HHHhhcCCCcccccc--ccccccChhhHHHHHHhc--CCCeee-e--cCcccCChHHHHHHHHHhCCCCCCCCCCC--CC
Q 040794          288 HYKRKHGIKPFMCRK--CGKAFAVRGDWRTHEKNC--GKLWYC-I--CGSDFKHKRSLKDHIKAFGNGHAAYGIDG--FE  358 (375)
Q Consensus       288 H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h--~k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~--~~  358 (375)
                      |+++|++++||.|..  |++.|.....|..|+++|  +++|.| +  |++.|..+..|.+|++..|.++++|.|+.  |+
T Consensus        58 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  137 (155)
T 2gli_A           58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCT  137 (155)
T ss_dssp             HTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTC
T ss_pred             HHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence            999999999999985  999999999999999987  689999 7  99999999999999944499999999998  87


Q ss_pred             CC
Q 040794          359 EE  360 (375)
Q Consensus       359 ~~  360 (375)
                      ..
T Consensus       138 ~~  139 (155)
T 2gli_A          138 KR  139 (155)
T ss_dssp             CE
T ss_pred             cc
Confidence            54

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.82  E-value=6.4e-21  Score=155.78  Aligned_cols=110  Identities=24%  Similarity=0.420  Sum_probs=104.0

Q ss_pred             CCCCCCCC--CCCCCCCCcCCCCccccccCCCceecC--cccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccc
Q 040794          183 DDSSAGYP--FNRLNKGQYWIPTPSQILIGPTQFSCP--VCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRL  258 (375)
Q Consensus       183 ~~~~~~~~--~~~~~~~~~~l~~h~~~h~g~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~  258 (375)
                      ..++.|..  |++.|.....|..|+++|.++++|.|.  .|++.|.....|..|+++|                .+.++|
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h----------------~~~~~~   67 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH----------------TGVKPF   67 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH----------------HCCCCE
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHc----------------CCCCCc
Confidence            45677875  999999999999999999999999999  7999999999999999999                777999


Q ss_pred             ccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc--ccccccccChhhHHHHHHhc
Q 040794          259 PCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC--RKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       259 ~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C--~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      .|..|+            +.|.....|..|+++|+++++|.|  ..||+.|..+..|..|+++|
T Consensus        68 ~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           68 QCKTCQ------------RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ECTTTC------------CEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             cCCccC------------chhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999            999999999999999999999999  89999999999999999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.8e-20  Score=153.98  Aligned_cols=115  Identities=19%  Similarity=0.396  Sum_probs=105.1

Q ss_pred             CCCCCCCCCCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          182 GDDSSAGYPFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      +..++.|..|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|...             .+.++|.|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-------------~~~~~~~C~   70 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN-------------RSEQVFTCS   70 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC-------------SCCCCEECS
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcC-------------CCCCCeECC
Confidence            4567889999999999999999999999999999999999999999999999864211             667899999


Q ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHH-hcC
Q 040794          262 CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK-NCG  321 (375)
Q Consensus       262 ~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k-~h~  321 (375)
                      .|+            +.|.....|..|+++|++++||.|..|++.|.++..|+.|++ .|.
T Consensus        71 ~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           71 VCQ------------ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             SSC------------CEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             CCC------------CccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            999            999999999999999999999999999999999999999998 464

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=2.1e-20  Score=154.08  Aligned_cols=112  Identities=23%  Similarity=0.385  Sum_probs=100.8

Q ss_pred             CCCCCC--CCCCCCCCCcCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          184 DSSAGY--PFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       184 ~~~~~~--~~~~~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .++.|.  .|++.|.....|..|+++| ++++|.|.+|++.|.....|..|+++|                .+.++|.|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~   66 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH----------------TGEKPFQCT   66 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGT----------------SCCCCEECC
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHc----------------CCCCCeeCC
Confidence            345676  7999999999999999999 889999999999999999999999999                778999998


Q ss_pred             C--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc--cccccccChhhHHHHHHhc--CCCe
Q 040794          262 C--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR--KCGKAFAVRGDWRTHEKNC--GKLW  324 (375)
Q Consensus       262 ~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~--~Cgk~F~~~~~L~~H~k~h--~k~~  324 (375)
                      .  |+            +.|.....|..|+++|+++++|.|.  .|+++|.++..|..|+++|  ++++
T Consensus        67 ~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           67 FEGCG------------KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             STTCC------------CEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCCCc------------CccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            6  99            9999999999999999999999995  5999999999999999987  4544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.80  E-value=2.4e-20  Score=159.86  Aligned_cols=118  Identities=25%  Similarity=0.351  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCCCCCCCCCcCCCCcccc-ccCCCc--------eecCcccccccCchHHhhcccccCCCCCCCCCCcCCCC
Q 040794          181 GGDDSSAGYPFNRLNKGQYWIPTPSQI-LIGPTQ--------FSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQ  251 (375)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~l~~h~~~-h~g~kp--------~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~  251 (375)
                      .....+.|..|++.|.....|..|+++ |.+.++        |.|.+|++.|.....|..|+++|               
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------------   85 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH---------------   85 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHH---------------
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhc---------------
Confidence            345678899999999999999999997 888765        89999999999999999999999               


Q ss_pred             CCCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc--ccccccChhhHHHHHHhc--CCCee
Q 040794          252 PTGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK--CGKAFAVRGDWRTHEKNC--GKLWY  325 (375)
Q Consensus       252 ~~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h--~k~~~  325 (375)
                       .++++|.|..  |+            +.|.....|.+|+++|++++||.|..  |++.|.++..|..|+++|  +++|.
T Consensus        86 -~~~~~~~C~~~~C~------------~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~  152 (155)
T 2rpc_A           86 -TGEKPFPCPFPGCG------------KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP  152 (155)
T ss_dssp             -HCCCSEECSCTTTC------------CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSC
T ss_pred             -CCCCcccCCcCCCC------------CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence             7789999998  99            99999999999999999999999997  999999999999999987  68998


Q ss_pred             e
Q 040794          326 C  326 (375)
Q Consensus       326 C  326 (375)
                      |
T Consensus       153 c  153 (155)
T 2rpc_A          153 S  153 (155)
T ss_dssp             S
T ss_pred             C
Confidence            7

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=1.3e-18  Score=139.51  Aligned_cols=89  Identities=22%  Similarity=0.404  Sum_probs=84.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      ...++|.|..|+            +.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|  +++|.| +|+
T Consensus        13 ~~~~~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   80 (106)
T 2ee8_A           13 KTKKEFICKFCG------------RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG   80 (106)
T ss_dssp             CCCCCCBCSSSC------------CBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSC
T ss_pred             CCCcCeECCCCC------------CccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcC
Confidence            456789999999            99999999999999999999999999999999999999999987  689999 999


Q ss_pred             cccCChHHHHHHHHHhCCCCCCCCC
Q 040794          330 SDFKHKRSLKDHIKAFGNGHAAYGI  354 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~ge~~y~C  354 (375)
                      +.|.....|.+|+++ |.++++|.+
T Consensus        81 ~~f~~~~~L~~H~~~-H~~~~~~~~  104 (106)
T 2ee8_A           81 KGFCQSRTLAVHKTL-HMQTSSPTA  104 (106)
T ss_dssp             CCCSSHHHHHHHHHH-TTSCCCCCC
T ss_pred             CcccCHHHHHHHHHH-hCCCCCCcC
Confidence            999999999999999 899999865

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1e-18  Score=140.74  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=83.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      +++++|.|..|+            +.|.....|..|+++|.  ++|.|.+|++.|.....|..|++ |  +++|.| +|+
T Consensus        12 ~~~~~~~C~~C~------------~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~   76 (107)
T 1wjp_A           12 ENKEVYQCRLCN------------AKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECM   76 (107)
T ss_dssp             CCCCCCBCTTTC------------CBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGT
T ss_pred             CCCcCeECCCCC------------CccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCcccc
Confidence            788999999999            99999999999999994  89999999999999999999996 6  789999 999


Q ss_pred             cccCChHHHHHHHHHhCCCCCCCCCCC
Q 040794          330 SDFKHKRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                      +.|..+..|++|++..|+++++|.|..
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999986699999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.3e-18  Score=134.43  Aligned_cols=87  Identities=23%  Similarity=0.452  Sum_probs=81.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      .+.++|.|..|+            +.|.....|..|+++|+++++|.|..|++.|.....|..|+++|  +++|.| +|+
T Consensus         4 ~~~~~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   71 (96)
T 2dmd_A            4 GSSGPHKCEVCG------------KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICP   71 (96)
T ss_dssp             CCCCCCCBTTTT------------BCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSS
T ss_pred             CCCcCeECCCCC------------CccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCC
Confidence            567889999999            99999999999999999999999999999999999999999987  789999 999


Q ss_pred             cccCChHHHHHHHHHhCCCCCCC
Q 040794          330 SDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      +.|.....|.+|+++ |.++++.
T Consensus        72 ~~f~~~~~l~~H~~~-h~~~~~p   93 (96)
T 2dmd_A           72 YASRNSSQLTVHLRS-HTGDSGP   93 (96)
T ss_dssp             CEESSHHHHHHHHTT-CCSCCCC
T ss_pred             CccCCHHHHHHHHHH-hcCCCCC
Confidence            999999999999999 6666543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3.7e-19  Score=144.91  Aligned_cols=95  Identities=19%  Similarity=0.253  Sum_probs=62.7

Q ss_pred             CcCCCCccccccCCCceecCcccccccCchHHhhcccc--cCCCCCCCCCCcCCCCCCCCccc-ccCCCCCCCCCCCCCC
Q 040794          198 QYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWG--HGSQYRKGPESLRGTQPTGMLRL-PCYCCAPGCRNNIDHP  274 (375)
Q Consensus       198 ~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~~~~~~~~~~~~~~~~-~C~~Cg~~~~~~~~h~  274 (375)
                      ...|..|+++|+++++|.|.+|++.|.....|..|+++  |                .+.+++ .|..|+          
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h----------------~~~~~~~~C~~C~----------   57 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGH----------------YRDDNHETDNNNP----------   57 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCC----------------CBCSCCCCCCCCC----------
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCc----------------cccCCCccCCCCC----------
Confidence            45567777777777777777777777777777777776  4                333333 367776          


Q ss_pred             CCccc--CCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          275 RAKPL--KDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       275 ~~k~f--~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                        +.|  .....|..|+++|++++||.|.+|++.|.++..|..|+++|
T Consensus        58 --~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           58 --KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT  103 (115)
T ss_dssp             --SCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHT
T ss_pred             --cccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHh
Confidence              555  66666667777777766666666666666666666666543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.6e-18  Score=138.27  Aligned_cols=94  Identities=14%  Similarity=0.176  Sum_probs=86.6

Q ss_pred             CCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCC
Q 040794          202 PTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKD  281 (375)
Q Consensus       202 ~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~  281 (375)
                      ..++++|+++++|.|.+|++.|.....|..|+++|                .  ++|.|..|+            +.|..
T Consensus         5 ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H----------------~--~~~~C~~C~------------~~f~~   54 (107)
T 1wjp_A            5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC----------------R--NAAVCPYCS------------LRFFS   54 (107)
T ss_dssp             CCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH----------------H--HSBCCTTTC------------CCBSS
T ss_pred             cccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC----------------C--CCccCCCCC------------CccCC
Confidence            35667889999999999999999999999999998                2  679999999            99999


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccChhhHHHHHH-hc--CCCeee
Q 040794          282 FRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK-NC--GKLWYC  326 (375)
Q Consensus       282 ~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k-~h--~k~~~C  326 (375)
                      ...|..|++ |++++||.|.+|++.|.++..|+.|++ +|  +++|.|
T Consensus        55 ~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           55 PELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             HHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCC
T ss_pred             HHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            999999996 999999999999999999999999998 77  678876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=5.1e-19  Score=144.09  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=88.2

Q ss_pred             CchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHh--hcCCCccc-cc
Q 040794          225 RYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKR--KHGIKPFM-CR  301 (375)
Q Consensus       225 ~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~--H~gekpy~-C~  301 (375)
                      ....|..|+++|                +++++|.|..|+            +.|.....|..|+++  |.+.+++. |.
T Consensus         3 s~~~l~~H~~~H----------------~~~~~~~C~~C~------------k~f~~~~~L~~H~~~~~h~~~~~~~~C~   54 (115)
T 2dmi_A            3 SGSSGKLYGSIF----------------TGASKFRCKDCS------------AAYDTLVELTVHMNETGHYRDDNHETDN   54 (115)
T ss_dssp             CCCCCCCCCCCC----------------CCCCSEEBSSSS------------CEESSHHHHHHHHHHTCCCBCSCCCCCC
T ss_pred             cchhhhhheeee----------------CCCCCEECCccC------------chhcCHHHHHHHHHHhCccccCCCccCC
Confidence            356788999999                888999999999            999999999999999  88888765 99


Q ss_pred             cccccc--cChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          302 KCGKAF--AVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       302 ~Cgk~F--~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      .|++.|  ..+..|..|+++|  +++|.| +|++.|..+..|++|++++|..+
T Consensus        55 ~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            999999  8999999999987  799999 99999999999999999966543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=3.3e-18  Score=132.72  Aligned_cols=83  Identities=28%  Similarity=0.534  Sum_probs=76.5

Q ss_pred             CcccccC--CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          255 MLRLPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       255 ~~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      +++|.|.  .|+            +.|.....|..|+++|+++++|.|..|++.|.....|..|+++|  +++|.| .|+
T Consensus         2 ~k~~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   69 (90)
T 1a1h_A            2 ERPYACPVESCD------------RRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG   69 (90)
T ss_dssp             -CCEECCSSSCC------------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCceECCCCCCC------------CccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            4789998  599            99999999999999999999999999999999999999999987  799999 999


Q ss_pred             cccCChHHHHHHHHHhCCCCC
Q 040794          330 SDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~ge~  350 (375)
                      +.|..++.|.+|+++ |.|++
T Consensus        70 ~~f~~~~~l~~H~~~-H~~~k   89 (90)
T 1a1h_A           70 RKFARSDERKRHTKI-HLRQK   89 (90)
T ss_dssp             CEESSHHHHHHHHGG-GGC--
T ss_pred             chhCCHHHHHHHHHH-hcccC
Confidence            999999999999999 67765

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.73  E-value=6.1e-18  Score=135.53  Aligned_cols=89  Identities=25%  Similarity=0.447  Sum_probs=83.0

Q ss_pred             cCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHH
Q 040794          209 IGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH  288 (375)
Q Consensus       209 ~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H  288 (375)
                      .++++|.|.+|++.|.....|..|+++|                .+.++|.|..|+            +.|.....|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~H   64 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTH----------------TDERPYTCDICH------------KAFRRQDHLRDH   64 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHH----------------CCSCCCBCSSSC------------CBCSCHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHc----------------CCCCCcCCCCcc------------chhCCHHHHHHH
Confidence            4567899999999999999999999999                777899999999            999999999999


Q ss_pred             HHhhcCCCccccccccccccChhhHHHHHHhc--CCCee
Q 040794          289 YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWY  325 (375)
Q Consensus       289 ~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~  325 (375)
                      +++|+++++|.|.+|++.|.+...|..|+++|  +++|.
T Consensus        65 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           65 RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             GGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             HHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            99999999999999999999999999999988  56665

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=8.6e-18  Score=131.78  Aligned_cols=86  Identities=29%  Similarity=0.607  Sum_probs=80.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--C--CCeee-e
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--G--KLWYC-I  327 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~--k~~~C-~  327 (375)
                      ++.++|.|..|+            +.|.....|..|+++|+++++|.|..|++.|.....|..|+++|  +  ++|.| +
T Consensus         3 ~~~~~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~   70 (95)
T 2yt9_A            3 SGSSGVACEICG------------KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS   70 (95)
T ss_dssp             CCCSCEECSSSC------------CEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS
T ss_pred             CCCCCeECCCCC------------CccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC
Confidence            567899999999            99999999999999999999999999999999999999999987  3  89999 9


Q ss_pred             cCcccCChHHHHHHHHHhCCCCC
Q 040794          328 CGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       328 Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      |++.|..+..|.+|++..|.++.
T Consensus        71 C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           71 CGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             SCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             ccchhCCHHHHHHHHHHhcCCCC
Confidence            99999999999999986688753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.9e-18  Score=132.27  Aligned_cols=85  Identities=26%  Similarity=0.481  Sum_probs=81.2

Q ss_pred             ccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       208 h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      ..++++|.|.+|++.|.....|..|+++|                .+.++|.|..|+            +.|.....|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~   54 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCH----------------TGVKPYKCKTCD------------YAAADSSSLNK   54 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGC----------------CCCCSEECSSSC------------CEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhc----------------CCCCCEeCCCCC------------CccCCHHHHHH
Confidence            45678999999999999999999999999                777899999999            99999999999


Q ss_pred             HHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          288 HYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       288 H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |+++|+++++|.|..|++.|.....|..|+++|
T Consensus        55 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   87 (96)
T 2dmd_A           55 HLRIHSDERPFKCQICPYASRNSSQLTVHLRSH   87 (96)
T ss_dssp             HHHHSCCCCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             HHHHhCCCCCccCCCCCCccCCHHHHHHHHHHh
Confidence            999999999999999999999999999999987

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.71  E-value=8.7e-18  Score=127.84  Aligned_cols=77  Identities=30%  Similarity=0.615  Sum_probs=74.0

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccC
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFK  333 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~  333 (375)
                      +|.|..|+            +.|.....|..|+++|+++++|.|..|++.|..+..|..|+++|  +++|.| .|++.|.
T Consensus         1 ~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   68 (82)
T 2kmk_A            1 SFDCKICG------------KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS   68 (82)
T ss_dssp             CEECSSSC------------CEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEES
T ss_pred             CccCCCCc------------ccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhC
Confidence            48899999            99999999999999999999999999999999999999999976  799999 9999999


Q ss_pred             ChHHHHHHHHHh
Q 040794          334 HKRSLKDHIKAF  345 (375)
Q Consensus       334 ~~~~L~~H~r~~  345 (375)
                      .+..|.+|+++|
T Consensus        69 ~~~~l~~H~~~H   80 (82)
T 2kmk_A           69 QSSNLITHSRKH   80 (82)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhh
Confidence            999999999994

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=7.9e-18  Score=135.88  Aligned_cols=82  Identities=27%  Similarity=0.568  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICG  329 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cg  329 (375)
                      +++++|.| .|+            +.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|  +++|.| +|+
T Consensus         6 ~~~k~~~C-~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (110)
T 2csh_A            6 SGDKLYPC-QCG------------KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA   72 (110)
T ss_dssp             CCCCCEEC-TTS------------CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSC
T ss_pred             CCCCCEec-cCC------------CccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCc
Confidence            55666777 677            77777777777777777777777777777777777777777765  466777 777


Q ss_pred             cccCChHHHHHHHHHhCC
Q 040794          330 SDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       330 k~F~~~~~L~~H~r~~H~  347 (375)
                      +.|..+..|.+|+++||.
T Consensus        73 ~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           73 KRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CEESCHHHHHHHHHHHHH
T ss_pred             chhcCHHHHHHHHHHccc
Confidence            777777777777777543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.8e-17  Score=133.79  Aligned_cols=68  Identities=28%  Similarity=0.549  Sum_probs=63.9

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCCCCCC
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEE  360 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~~~~  360 (375)
                      .|+++++|.| .|++.|.....|..|+++|  +++|.| +|++.|..+..|.+|+++ |.++++|.|..|+..
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~   74 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKR   74 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT-TCCCCCEECSSSCCE
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH-cCCCCCeeCCCCcch
Confidence            5889999999 9999999999999999987  689999 999999999999999998 889999999999753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=1.1e-17  Score=129.73  Aligned_cols=83  Identities=29%  Similarity=0.629  Sum_probs=78.2

Q ss_pred             CCCceecC--cccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          210 GPTQFSCP--VCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       210 g~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      |+++|.|.  .|++.|.....|..|+++|                .+.++|.|..|+            +.|.....|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~   52 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIH----------------TGQKPFQCRICM------------RNFSRSDHLTT   52 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHH----------------HCCCCEECTTTC------------CEESCHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHh----------------CCCCCccCCCCC------------cccCCHHHHHH
Confidence            46799998  5999999999999999999                777899999999            99999999999


Q ss_pred             HHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          288 HYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       288 H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |+++|+++++|.|..|++.|..+..|..|+++|
T Consensus        53 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   85 (90)
T 1a1h_A           53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIH   85 (90)
T ss_dssp             HHHHHHCCCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             HHHHcCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            999999999999999999999999999999987

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.2e-17  Score=128.48  Aligned_cols=85  Identities=26%  Similarity=0.581  Sum_probs=80.4

Q ss_pred             cCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHH
Q 040794          209 IGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTH  288 (375)
Q Consensus       209 ~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H  288 (375)
                      +++++|.|.+|++.|.....|..|+++|                .++++|.|..|+            +.|.....|..|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~H   54 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSH----------------SGEKPYSCPVCG------------LRFKRKDRMSYH   54 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHS----------------CSSCSEECSSSC------------CEESCHHHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhc----------------CCCCCCcCCCCC------------CccCCHHHHHHH
Confidence            4678999999999999999999999999                778999999999            999999999999


Q ss_pred             HHhhcCC--CccccccccccccChhhHHHHHH-hcC
Q 040794          289 YKRKHGI--KPFMCRKCGKAFAVRGDWRTHEK-NCG  321 (375)
Q Consensus       289 ~r~H~ge--kpy~C~~Cgk~F~~~~~L~~H~k-~h~  321 (375)
                      +++|+++  ++|.|..|++.|..+..|..|++ +|.
T Consensus        55 ~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           55 VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             HHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             HHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcC
Confidence            9999997  99999999999999999999996 674

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=1.2e-17  Score=127.07  Aligned_cols=80  Identities=30%  Similarity=0.655  Sum_probs=77.4

Q ss_pred             ceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhh
Q 040794          213 QFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRK  292 (375)
Q Consensus       213 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H  292 (375)
                      ||.|.+|++.|.....|..|+++|                .+.++|.|..|+            +.|.....|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~l~~H~~~h   52 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIH----------------SDTRPYPCQYCG------------KRFHQKSDMKKHTFIH   52 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH----------------HTCCCEECSSSC------------CEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHc----------------CCCCCeeCCcCC------------hhhCCHHHHHHHHHHh
Confidence            689999999999999999999999                777899999999            9999999999999999


Q ss_pred             cCCCccccccccccccChhhHHHHHHhc
Q 040794          293 HGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       293 ~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +++++|.|..|++.|.++..|..|+++|
T Consensus        53 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           53 TGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             HTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             cCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            9999999999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.65  E-value=5.9e-17  Score=117.58  Aligned_cols=55  Identities=24%  Similarity=0.593  Sum_probs=36.6

Q ss_pred             CCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      ||||.|.+||++|.+++.|..|+++|  +|||.| +|||+|.+++.|++|+++ |+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cCCCC
Confidence            56666666666666666666666655  566666 677777777777777776 56654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.65  E-value=4.1e-16  Score=123.18  Aligned_cols=81  Identities=25%  Similarity=0.494  Sum_probs=76.0

Q ss_pred             CCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc--cccccccChhhHHHHHHhc--CCCeee
Q 040794          253 TGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR--KCGKAFAVRGDWRTHEKNC--GKLWYC  326 (375)
Q Consensus       253 ~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~--~Cgk~F~~~~~L~~H~k~h--~k~~~C  326 (375)
                      ...++|.|..  |+            +.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++|  +++|.|
T Consensus        11 ~~~~~~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   78 (100)
T 2ebt_A           11 EKRRIHYCDYPGCT------------KVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC   78 (100)
T ss_dssp             CSCCCEECCSSSCC------------CEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBC
T ss_pred             ccCcceEcCCCCCC------------CcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeEC
Confidence            4557899997  99            9999999999999999999999996  6999999999999999987  789999


Q ss_pred             -ecCcccCChHHHHHHHHHh
Q 040794          327 -ICGSDFKHKRSLKDHIKAF  345 (375)
Q Consensus       327 -~Cgk~F~~~~~L~~H~r~~  345 (375)
                       +|++.|..+..|.+|+++|
T Consensus        79 ~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           79 GVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             SSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCcCccCCHHHHHHHHHHh
Confidence             9999999999999999994

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.65  E-value=1.2e-17  Score=138.91  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             ccccCCCceecCcccc--cccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHH
Q 040794          206 QILIGPTQFSCPVCCK--TFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFR  283 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k--~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~  283 (375)
                      .++.|.++|.|..++.  .|.....+..|...                 ...+.+.|.+|...|...      +.|....
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~l~-----------------~~~~~~~c~~~~~~~~~~------~~~~~~~   61 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQLT-----------------PEQKRLIRAIVKTLIHNP------QLLDESS   61 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEECCHHHHHHHTTSC-----------------HHHHHHHHHHHHHHHHCG------GGTTTHH
T ss_pred             hhcccccccccccCCeeeeecHHhhhccccCC-----------------hhhCcccchhhhcccCCC------cccCCHH
Confidence            4578889998877543  33333222223221                 234678888887333222      4556777


Q ss_pred             HHHHHHHhhcCCCccccccccccccChhhHHHHHHhcCCCeee-ecCcccCChHHHHHHHHHhC
Q 040794          284 TLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       284 ~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      .|..|+ .|++++||.|..||+.|..+..|..|+++|+++|.| +|++.|..++.|++|+++||
T Consensus        62 ~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           62 YLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             HHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             HHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            888887 699999999999999999999999999999999999 99999999999999999954

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=1.8e-17  Score=128.63  Aligned_cols=80  Identities=21%  Similarity=0.386  Sum_probs=76.2

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc-CCCeee-ecCccc
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC-GKLWYC-ICGSDF  332 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-~k~~~C-~Cgk~F  332 (375)
                      +++|.|..|+            +.|.....|..|+++|++++||.|..|+++|.....|..|+++| +++|.| .|++.|
T Consensus         1 ek~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f   68 (88)
T 1llm_C            1 MKPFQCRICM------------RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELL   68 (88)
T ss_dssp             CCCEECTTTC------------CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCC------------CccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            3689999999            99999999999999999999999999999999999999999976 689999 999999


Q ss_pred             CChHHHHHHHHHhC
Q 040794          333 KHKRSLKDHIKAFG  346 (375)
Q Consensus       333 ~~~~~L~~H~r~~H  346 (375)
                      ..+..|..|++.+|
T Consensus        69 ~~~~~L~~H~~~~h   82 (88)
T 1llm_C           69 SKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHH
Confidence            99999999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.63  E-value=2.4e-16  Score=121.82  Aligned_cols=43  Identities=30%  Similarity=0.638  Sum_probs=21.9

Q ss_pred             cccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHh
Q 040794          277 KPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      +.|.....|..|+++|+++++|.|..|++.|.....|..|+++
T Consensus        45 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           45 WKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=5.5e-16  Score=122.42  Aligned_cols=84  Identities=25%  Similarity=0.546  Sum_probs=78.5

Q ss_pred             CCCceecCc--ccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC--CCCCCCCCCCCCCCCcccCCHHHH
Q 040794          210 GPTQFSCPV--CCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY--CCAPGCRNNIDHPRAKPLKDFRTL  285 (375)
Q Consensus       210 g~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L  285 (375)
                      ..++|.|..  |++.|.....|..|+++|                .+.++|.|.  .|+            +.|.....|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~~~C~------------~~f~~~~~l   63 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTH----------------TGEKPYKCTWEGCD------------WRFARSDEL   63 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHH----------------SCCCCEECCSSSCC------------CEESSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHh----------------CCCCCeeCCCCCCC------------CccCCHHHH
Confidence            346899997  999999999999999999                777899996  599            999999999


Q ss_pred             HHHHHhhcCCCccccccccccccChhhHHHHHHhcC
Q 040794          286 QTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       286 ~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~  321 (375)
                      ..|+++|+++++|.|.+|++.|.....|..|+++|.
T Consensus        64 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.61  E-value=5.5e-16  Score=118.42  Aligned_cols=77  Identities=23%  Similarity=0.415  Sum_probs=72.9

Q ss_pred             cccc--CCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc--ccccccChhhHHHHHHhcCCCeee-e---c
Q 040794          257 RLPC--YCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK--CGKAFAVRGDWRTHEKNCGKLWYC-I---C  328 (375)
Q Consensus       257 ~~~C--~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h~k~~~C-~---C  328 (375)
                      +|.|  ..|+            +.|.....|..|+++|++++||.|..  |+++|.....|..|+++|.. |.| .   |
T Consensus         1 p~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C   67 (85)
T 2j7j_A            1 MYVCHFENCG------------KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSC   67 (85)
T ss_dssp             CEECCSTTCC------------CEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSC
T ss_pred             CccCCCCCCC------------cccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            4789  8899            99999999999999999999999988  99999999999999999855 999 8   9


Q ss_pred             CcccCChHHHHHHHHHhC
Q 040794          329 GSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       329 gk~F~~~~~L~~H~r~~H  346 (375)
                      ++.|...+.|.+|+++||
T Consensus        68 ~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           68 SFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCEESSHHHHHHHHHHCC
T ss_pred             CCccCCHHHHHHHHHhcC
Confidence            999999999999999965

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.61  E-value=6.5e-16  Score=119.34  Aligned_cols=78  Identities=26%  Similarity=0.552  Sum_probs=74.1

Q ss_pred             cccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc--cccccccChhhHHHHHHhc--CCCeee-ec
Q 040794          256 LRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR--KCGKAFAVRGDWRTHEKNC--GKLWYC-IC  328 (375)
Q Consensus       256 ~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~--~Cgk~F~~~~~L~~H~k~h--~k~~~C-~C  328 (375)
                      +.|.|..  |+            +.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++|  +++|.| .|
T Consensus         4 ~~~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (89)
T 2wbs_A            4 ATHTCDYAGCG------------KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC   71 (89)
T ss_dssp             CCEECCSTTTC------------CEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSS
T ss_pred             CCeeCCCCCCC------------CcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCC
Confidence            5689999  99            9999999999999999999999997  6999999999999999987  799999 99


Q ss_pred             CcccCChHHHHHHHHHh
Q 040794          329 GSDFKHKRSLKDHIKAF  345 (375)
Q Consensus       329 gk~F~~~~~L~~H~r~~  345 (375)
                      ++.|..++.|.+|+++|
T Consensus        72 ~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           72 DRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             SCEESSHHHHHHHGGGG
T ss_pred             CcccCCHHHHHHHHHhh
Confidence            99999999999999983

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.61  E-value=3.3e-16  Score=113.64  Aligned_cols=54  Identities=28%  Similarity=0.520  Sum_probs=52.9

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      ++||.|.+||            |.|...+.|..|+++|+|+|||.|.+||++|.+++.|+.|+++|
T Consensus         2 EKpy~C~~C~------------k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            2 ERPFFCNFCG------------KTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CCCEECTTTC------------CEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCC------------CEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            5899999999            99999999999999999999999999999999999999999998

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.4e-16  Score=125.23  Aligned_cols=84  Identities=17%  Similarity=0.223  Sum_probs=72.5

Q ss_pred             cccCCHHHHHHHHHhhcCCCcccccccccccc-ChhhHHHHHHhc---CCCeee-ecCcccCChHHHHHHHHHhCCCCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFA-VRGDWRTHEKNC---GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAA  351 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~-~~~~L~~H~k~h---~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~  351 (375)
                      ..+.....+..|+++|+++++|.|.+|++.|. .+..|+.|+++|   +++|.| +|+|.|.++..|++|+++ |.+++|
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~kp   82 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA-EHSAKP   82 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH-HSCSCS
T ss_pred             CCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH-HcCCCC
Confidence            34555567789999999999999999999999 999999999986   579999 999999999999999999 668888


Q ss_pred             CCCCCCCCCC
Q 040794          352 YGIDGFEEED  361 (375)
Q Consensus       352 y~C~~~~~~~  361 (375)
                      +..+..+.++
T Consensus        83 ~~~~~~~~~~   92 (98)
T 2gqj_A           83 SDAEASEGGE   92 (98)
T ss_dssp             SCCCCCCCCC
T ss_pred             CCCCCCcccC
Confidence            7766554433

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=6.4e-16  Score=118.61  Aligned_cols=74  Identities=20%  Similarity=0.416  Sum_probs=68.2

Q ss_pred             HHHHHHhhcCCCccccccccccccChhhHHHHHHhc--C----CCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCCC
Q 040794          285 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--G----KLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGF  357 (375)
Q Consensus       285 L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~----k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~  357 (375)
                      |.+|+++|++++||.|.+|++.|.....|..|++++  +    ++|.| +|++.|..+..|.+|+++ |.+++++.|..|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~~~~   81 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENS   81 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH-CCCCCSCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH-ccCCCCcccCCC
Confidence            567999999999999999999999999999999864  2    78999 999999999999999999 899999999988


Q ss_pred             CC
Q 040794          358 EE  359 (375)
Q Consensus       358 ~~  359 (375)
                      ..
T Consensus        82 ~~   83 (86)
T 1x6h_A           82 GP   83 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.5e-15  Score=116.51  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=70.9

Q ss_pred             CCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCccc
Q 040794          200 WIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPL  279 (375)
Q Consensus       200 ~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f  279 (375)
                      .|..|+++|+++++|.|.+|++.|.....|..|+++|+...            ...++|.|..|+            +.|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~------------~~~~~~~C~~C~------------~~f   57 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN------------FVPAAFVCSKCG------------KTF   57 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS------------CCCCCEECSSSC------------CEE
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc------------CCCcceECCCCC------------Chh
Confidence            46789999999999999999999999999999998763100            012689999999            999


Q ss_pred             CCHHHHHHHHHhhcCCCccccccccccc
Q 040794          280 KDFRTLQTHYKRKHGIKPFMCRKCGKAF  307 (375)
Q Consensus       280 ~~~~~L~~H~r~H~gekpy~C~~Cgk~F  307 (375)
                      .....|..|+++|++++++.|..|+.+|
T Consensus        58 ~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           58 TRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             SCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            9999999999999999999999998876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=4.6e-16  Score=120.68  Aligned_cols=80  Identities=19%  Similarity=0.401  Sum_probs=76.2

Q ss_pred             CCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHH
Q 040794          211 PTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYK  290 (375)
Q Consensus       211 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r  290 (375)
                      ++||.|.+|++.|.....|..|+++|                .++++|.|..|+            +.|.....|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C~------------k~f~~~~~L~~H~~   52 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTH----------------TGEKPFACDICG------------RKFARSDERKRHRD   52 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH----------------HCCCCEECTTTC------------CEESSHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHc----------------CCCCCccCCCCC------------CccCCHHHHHHHHH
Confidence            47899999999999999999999999                778999999999            99999999999999


Q ss_pred             hhcCCCccccccccccccChhhHHHHHHh
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      +|++ ++|.|..|++.|..+..|..|++.
T Consensus        53 ~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           53 IQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            9995 899999999999999999999984

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.7e-15  Score=113.42  Aligned_cols=70  Identities=20%  Similarity=0.459  Sum_probs=44.1

Q ss_pred             CCCceecCc--ccccccCchHHhhccc-ccCCCCCCCCCCcCCCCCCCCcccccCC--CCCCCCCCCCCCCCcccCCHHH
Q 040794          210 GPTQFSCPV--CCKTFNRYNNMQMHMW-GHGSQYRKGPESLRGTQPTGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRT  284 (375)
Q Consensus       210 g~kp~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~  284 (375)
                      ++++|.|..  |++.|.....|..|++ +|                .++++|.|..  |+            +.|.....
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H----------------~~~~~~~C~~~~C~------------k~f~~~~~   55 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQH----------------IHQKSFSCPEPACG------------KSFNFKKH   55 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGG----------------GSCCCEECSCTTTC------------CEESSHHH
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHh----------------CCCCCeECCCCCCc------------CccCCHHH
Confidence            445666654  6666666666666666 45                4556666666  66            66666666


Q ss_pred             HHHHHHhhcCCCccccccccccc
Q 040794          285 LQTHYKRKHGIKPFMCRKCGKAF  307 (375)
Q Consensus       285 L~~H~r~H~gekpy~C~~Cgk~F  307 (375)
                      |.+|+++|++++||.|.+||++|
T Consensus        56 L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           56 LKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             HHHHHHHhCCCCCeeCCCCCCCC
Confidence            66666666666666666666665

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.7e-15  Score=121.71  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             hcCCCccccccccccccChhhHHHHHH-hc-----CCCeee-ecCcccCChHHHHHH-HHHhCCCCCCCCCCCCCCCCCC
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEK-NC-----GKLWYC-ICGSDFKHKRSLKDH-IKAFGNGHAAYGIDGFEEEDEP  363 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k-~h-----~k~~~C-~Cgk~F~~~~~L~~H-~r~~H~ge~~y~C~~~~~~~~~  363 (375)
                      .+|++||.|..||++|.+++.|..|++ +|     +++|.| +|||.|..++.|++| +++ |+|++||.|+.+..+  .
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~-Htgekpy~C~~~~~~--~   89 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY-HPGEENFKLTMVKRN--N   89 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT-STTCCCEEEEECCCS--S
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh-cCCCCCeeCCcccCC--C
Confidence            467888899889999988888988887 46     588999 899999999999999 777 899999999875432  2


Q ss_pred             CcccccC
Q 040794          364 ASEVEQD  370 (375)
Q Consensus       364 ~~~~~~~  370 (375)
                      ...+||+
T Consensus        90 ~~~~eq~   96 (102)
T 2ghf_A           90 QTIFEQT   96 (102)
T ss_dssp             CCCEEEE
T ss_pred             ccchhhh
Confidence            3444543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=3.4e-15  Score=112.74  Aligned_cols=63  Identities=24%  Similarity=0.558  Sum_probs=52.2

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCC
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGI  354 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C  354 (375)
                      .+.++++|.|.+|++.|.....|..|+++|  +++|.| +|++.|..+..|.+|+++ |.+++||+|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGG-SCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCC
Confidence            456678888888888888888888888876  578888 888888888889999888 888888887

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=7e-15  Score=116.72  Aligned_cols=76  Identities=16%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             cccCCHHHHHHHHHhhcCCCccccccccccc-cChhhHHHHHHhc-CCCeee-ecCcccCChHHHHHH-HHHhCCCCCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIKPFMCRKCGKAF-AVRGDWRTHEKNC-GKLWYC-ICGSDFKHKRSLKDH-IKAFGNGHAAY  352 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F-~~~~~L~~H~k~h-~k~~~C-~Cgk~F~~~~~L~~H-~r~~H~ge~~y  352 (375)
                      ..|.....|..|+++|+++++|.|..|++.| .++..|+.|+++| +++|.| +|||.|..++.|++| +++ |+++..|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~-H~~~p~~   92 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN-HNSLPSG   92 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHH-TCCCSSC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHh-cCCCCCC
Confidence            5677788999999999999999999999999 9999999999998 789999 999999999999999 777 7875544


Q ss_pred             C
Q 040794          353 G  353 (375)
Q Consensus       353 ~  353 (375)
                      .
T Consensus        93 ~   93 (96)
T 2ctd_A           93 P   93 (96)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.3e-15  Score=115.04  Aligned_cols=68  Identities=19%  Similarity=0.355  Sum_probs=62.4

Q ss_pred             HHHHHHhhcCCCccccccccccccChhhHHHHHH-hc--C-CCeee-ecCcccCChHHHHHHHHHhCCCCCCC
Q 040794          285 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK-NC--G-KLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       285 L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k-~h--~-k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      |.+|+++|++++||.|.+|++.|..+..|..|++ .|  + ++|.| +|++.|..+..|.+|++++|.+++|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            4568899999999999999999999999999997 56  2 79999 99999999999999999999988875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=8e-15  Score=110.78  Aligned_cols=69  Identities=26%  Similarity=0.566  Sum_probs=53.7

Q ss_pred             CCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHH-hhcCCCcccccc--ccccccChhhHHHHHHhc--CCCee
Q 040794          253 TGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYK-RKHGIKPFMCRK--CGKAFAVRGDWRTHEKNC--GKLWY  325 (375)
Q Consensus       253 ~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r-~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h--~k~~~  325 (375)
                      ++.++|.|..  |+            +.|.....|..|++ +|+++++|.|..  |++.|..+..|..|+++|  +++|.
T Consensus         3 ~~~~~~~C~~~~C~------------~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~   70 (79)
T 2dlk_A            3 SGSSGMPCDFPGCG------------RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI   70 (79)
T ss_dssp             SCCSSEECSSTTTC------------CEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCS
T ss_pred             CCCCCccCCCCCCc------------CccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCee
Confidence            4566777776  87            88888888888887 688888888877  888888888888888766  67788


Q ss_pred             e-ecCcccC
Q 040794          326 C-ICGSDFK  333 (375)
Q Consensus       326 C-~Cgk~F~  333 (375)
                      | +|+++|.
T Consensus        71 C~~C~k~F~   79 (79)
T 2dlk_A           71 CEFSGPSSG   79 (79)
T ss_dssp             CCSSSCCCC
T ss_pred             CCCCCCCCC
Confidence            8 7888774

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.52  E-value=7.9e-15  Score=111.90  Aligned_cols=77  Identities=27%  Similarity=0.552  Sum_probs=73.5

Q ss_pred             ceec--CcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHH
Q 040794          213 QFSC--PVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTH  288 (375)
Q Consensus       213 p~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H  288 (375)
                      ||.|  ..|++.|.....|..|+++|                .++++|.|..  |+            +.|.....|.+|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~~~C~------------~~f~~~~~l~~H   52 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSH----------------TQQLPYECPHEGCD------------KRFSLPSRLKRH   52 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH----------------HTTCCEECCSTTCC------------CEESSHHHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHh----------------CCCCCeeCCCCCCc------------CccCCHHHHHHH
Confidence            6899  99999999999999999999                7789999998  99            999999999999


Q ss_pred             HHhhcCCCcccccc---ccccccChhhHHHHHHhc
Q 040794          289 YKRKHGIKPFMCRK---CGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       289 ~r~H~gekpy~C~~---Cgk~F~~~~~L~~H~k~h  320 (375)
                      +++|++   |.|..   |++.|.....|..|+++|
T Consensus        53 ~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           53 EKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHS---EECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             HHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            999998   99999   999999999999999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-14  Score=108.77  Aligned_cols=61  Identities=31%  Similarity=0.744  Sum_probs=49.2

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCC
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      .+.++++|.|..|++.|..+..|..|+++|  +++|.| +|++.|..+..|++|+++ |++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH-HCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            456778888888888888888888888876  578888 888888888888888888 6788876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.4e-14  Score=108.04  Aligned_cols=66  Identities=23%  Similarity=0.373  Sum_probs=49.6

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHH
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQ  286 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~  286 (375)
                      .+.++++|.|.+|++.|.....|..|+++|                .++++|.|..|+            +.|.....|.
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~~~~~~~C~~C~------------~~f~~~~~L~   63 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTH----------------TGEKPYKCDECG------------KAFIQRSHLI   63 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTT----------------CCSCSEECSSSC------------CEESSHHHHH
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHc----------------CCCcCeeCCCCC------------CccCCHHHHH
Confidence            455667777777777777777777777777                666777777777            7777777777


Q ss_pred             HHHHhhcCCCcccc
Q 040794          287 THYKRKHGIKPFMC  300 (375)
Q Consensus       287 ~H~r~H~gekpy~C  300 (375)
                      +|+++|++++||.|
T Consensus        64 ~H~~~H~~~~p~~C   77 (77)
T 2cot_A           64 GHHRVHTGSGPSSG   77 (77)
T ss_dssp             HHGGGSCCCCCCCC
T ss_pred             HHHHHhCCCCCCCC
Confidence            77777777777776

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.7e-14  Score=107.89  Aligned_cols=64  Identities=17%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc-----CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCC
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC-----GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGI  354 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-----~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C  354 (375)
                      +|++++||.|.+|++.|..+..|..|+++|     +++|.| +|++.|..+..|.+|++.+|.++++...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            478999999999999999999999999976     589999 9999999999999999888999987653

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-16  Score=118.98  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=64.7

Q ss_pred             HHHHHHHHhhcCCCccccccccccccChhhHHHHHHhcCCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCCC
Q 040794          283 RTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGF  357 (375)
Q Consensus       283 ~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~  357 (375)
                      ..|..|+++|++++||.|..||+.|.....|..     +++|.| +|++.|..+..|.+|+++ |.++++|.|+.|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-----~~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-----RKTPMCEKCRKDSCQEAALNKDEGN-ESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-----SSSCCCHHHHHTCSCCCSSCCCSSC-CCCCCCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-----CCCCCCCCCChhhcCHHHHHHHHHh-hcCCCCCCCCCC
Confidence            457789999999999999999999999999887     899999 999999999999999999 899999999986

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.8e-14  Score=113.16  Aligned_cols=78  Identities=19%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             CCCcCCCCccccccCCCceecCccccccc-CchHHhhcccccCCCCCCCCCCcCCCCCCC-CcccccCCCCCCCCCCCCC
Q 040794          196 KGQYWIPTPSQILIGPTQFSCPVCCKTFN-RYNNMQMHMWGHGSQYRKGPESLRGTQPTG-MLRLPCYCCAPGCRNNIDH  273 (375)
Q Consensus       196 ~~~~~l~~h~~~h~g~kp~~C~~C~k~F~-~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~~~~~~~~h  273 (375)
                      .....+..|+++|.++++|.|.+|++.|. ...+|..|+++|                .+ +++|.|.+|+         
T Consensus         7 ~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h----------------~~~~~~~~C~~C~---------   61 (98)
T 2gqj_A            7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVC----------------QKLQDALKCQHCR---------   61 (98)
T ss_dssp             CCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHH----------------HHHHHHHSCSSSC---------
T ss_pred             CCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHH----------------cCCCCCEECCCCC---------
Confidence            34455677888888888888888888888 888888888888                55 6788888888         


Q ss_pred             CCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          274 PRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       274 ~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                         +.|.....|.+|+++|++++|+...
T Consensus        62 ---k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           62 ---KQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             ---CCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             ---CccCCHHHHHHHHHHHcCCCCCCCC
Confidence               8888888888888888888886543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=5.3e-14  Score=104.79  Aligned_cols=61  Identities=28%  Similarity=0.542  Sum_probs=51.7

Q ss_pred             HHhhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          289 YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       289 ~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      .++|++++||.|..|++.|.....|..|+++|  +++|.| +|++.|..+..|++|+++ |.++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH-HHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh-cCCCC
Confidence            45788899999999999999999999999877  688999 899999999999999998 44443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=5.2e-14  Score=104.13  Aligned_cols=61  Identities=23%  Similarity=0.431  Sum_probs=48.1

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCCCC
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      .|+++++|.|..|++.|..+..|..|+++|  +++|.| +|++.|..+..|++|+++ |.+++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH-HHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH-HhCCCCC
Confidence            367788888888888888888888888876  578888 888888888888888888 4555654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=8.7e-14  Score=107.98  Aligned_cols=60  Identities=22%  Similarity=0.474  Sum_probs=38.0

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      ++.+.++|.|.+||++|.++..|.+|+++|  +|||.| +|+|+|.++..|++|++..|++|.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            344556666666666666666666666655  566666 666666666677777655566553

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=9.4e-14  Score=103.87  Aligned_cols=63  Identities=25%  Similarity=0.465  Sum_probs=34.1

Q ss_pred             ccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       208 h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      +.++++|+|..|++.|.....|..|+++|                .++++|.|..|+            +.|.....|.+
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H----------------~~~~~~~C~~C~------------k~f~~~~~L~~   63 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVH----------------TGEKPYRCNICG------------AQFNRPANLKT   63 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHH----------------CCCCSEECTTTC------------CEESCHHHHHH
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHc----------------CCCCCEECCCCC------------chhCCHHHHHH
Confidence            34445555555555555555555555555                444555555555            55555555555


Q ss_pred             HHHhhcCCCcc
Q 040794          288 HYKRKHGIKPF  298 (375)
Q Consensus       288 H~r~H~gekpy  298 (375)
                      |+++|+++|||
T Consensus        64 H~~~H~~~kp~   74 (74)
T 2lce_A           64 HTRIHSGEKPY   74 (74)
T ss_dssp             HHHHHCCSCCC
T ss_pred             HHHhcCCCCCC
Confidence            55555555554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=9e-14  Score=110.26  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             ccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCccc-CCHHHHHHHHHhhcCCCccc
Q 040794          221 KTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPL-KDFRTLQTHYKRKHGIKPFM  299 (375)
Q Consensus       221 k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f-~~~~~L~~H~r~H~gekpy~  299 (375)
                      .+|.....|..|++.|                .++++|.|..|+            +.| .....|..|+++| +++||.
T Consensus        14 ~~~~~~~~~~~~~~~~----------------~~~~~~~C~~C~------------k~F~~~~~~L~~H~~~h-~~k~~~   64 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEI----------------VDKGSVSCPTCQ------------AVGRKTIEGLKKHMENC-KQEMFT   64 (96)
T ss_dssp             CSSCTTCHHHHHHHHH----------------HHTSCEECTTTC------------SCEESSHHHHHHHHHHH-CCCCCC
T ss_pred             CCCCCchHHHHHHHHh----------------cCCCCcCCCCCC------------CCcccCHHHHHHHHHHH-CCCCeE
Confidence            4667788899999998                777999999999            999 9999999999999 999999


Q ss_pred             cccccccccChhhHHHH-HHhc-CCCe
Q 040794          300 CRKCGKAFAVRGDWRTH-EKNC-GKLW  324 (375)
Q Consensus       300 C~~Cgk~F~~~~~L~~H-~k~h-~k~~  324 (375)
                      |.+|||+|.++..|+.| +++| +++|
T Consensus        65 C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           65 CHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            99999999999999999 8888 5554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.1e-13  Score=100.98  Aligned_cols=59  Identities=20%  Similarity=0.502  Sum_probs=52.3

Q ss_pred             HHhhcCCCccccccccccccChhhHHHHHHh-c---CCCeee-ecCcccCChHHHHHHHHHhCC
Q 040794          289 YKRKHGIKPFMCRKCGKAFAVRGDWRTHEKN-C---GKLWYC-ICGSDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       289 ~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~-h---~k~~~C-~Cgk~F~~~~~L~~H~r~~H~  347 (375)
                      +++|++++||.|..|++.|..+..|..|+++ |   +++|.| .|++.|..++.|.+|++++|.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3578999999999999999999999999987 5   489999 999999999999999999763

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.39  E-value=2.4e-13  Score=96.02  Aligned_cols=52  Identities=25%  Similarity=0.407  Sum_probs=27.8

Q ss_pred             CCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhC
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      ++||.|..|++.|.....|..|+++|  +++|.| +|++.|..+..|.+|+++||
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            45555555555555555555555544  455555 55555555556666655543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=3.7e-13  Score=108.03  Aligned_cols=67  Identities=12%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             CCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHH-hh---cCCCccccccccccccChhhHHHH-HHhc--CCCe
Q 040794          252 PTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYK-RK---HGIKPFMCRKCGKAFAVRGDWRTH-EKNC--GKLW  324 (375)
Q Consensus       252 ~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r-~H---~gekpy~C~~Cgk~F~~~~~L~~H-~k~h--~k~~  324 (375)
                      .+|+++|.|..|+            +.|...+.|.+|++ +|   ++++||.|.+||++|..++.|..| +++|  +|||
T Consensus        13 ~~gekpy~C~~Cg------------k~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           13 KKVEGGYECKYCT------------FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             CCCCSSEECSSCS------------CEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCE
T ss_pred             CCCCcCcCCCCCC------------CccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCe
Confidence            3788999999999            99999999999998 59   678999999999999999999999 7877  7999


Q ss_pred             ee-ecCc
Q 040794          325 YC-ICGS  330 (375)
Q Consensus       325 ~C-~Cgk  330 (375)
                      .| ++.+
T Consensus        81 ~C~~~~~   87 (102)
T 2ghf_A           81 KLTMVKR   87 (102)
T ss_dssp             EEEECCC
T ss_pred             eCCcccC
Confidence            99 6443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3e-13  Score=100.61  Aligned_cols=32  Identities=31%  Similarity=0.514  Sum_probs=16.5

Q ss_pred             cccccCCCceecCcccccccCchHHhhccccc
Q 040794          205 SQILIGPTQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       205 ~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      .++|+++++|.|.+|++.|.....|..|+++|
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h   37 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVH   37 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhc
Confidence            33445555555555555555555555555555

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=5.1e-13  Score=98.70  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=38.6

Q ss_pred             ccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHH
Q 040794          208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQT  287 (375)
Q Consensus       208 h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~  287 (375)
                      |+++++|.|.+|++.|.....|..|+++|                .++++|.|..|+            +.|.....|.+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C~------------~~f~~~~~L~~   55 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIH----------------CTDRPFKCNYCS------------FDTKQPSNLSK   55 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGG----------------CCSCSEECSSSS------------CEESSHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHc----------------CCCCCEeCCCCC------------CccCCHHHHHH
Confidence            44556666666666666666666666666                555566666666            66666666666


Q ss_pred             HHHhhcCCCc
Q 040794          288 HYKRKHGIKP  297 (375)
Q Consensus       288 H~r~H~gekp  297 (375)
                      |+++|++++|
T Consensus        56 H~~~h~~~~p   65 (70)
T 1x5w_A           56 HMKKFHGDMS   65 (70)
T ss_dssp             HHHHHHSSSC
T ss_pred             HHHHHhCCCC
Confidence            6666666655

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=8.1e-13  Score=99.50  Aligned_cols=66  Identities=21%  Similarity=0.500  Sum_probs=41.2

Q ss_pred             CCCCccccccCCCceecCcccccccCchHHhhccc-ccCCCCCCCCCCcCCCCCCC-CcccccCCCCCCCCCCCCCCCCc
Q 040794          200 WIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW-GHGSQYRKGPESLRGTQPTG-MLRLPCYCCAPGCRNNIDHPRAK  277 (375)
Q Consensus       200 ~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~~~~~~~~h~~~k  277 (375)
                      +|..|+++|+++++|.|.+|++.|.....|..|++ .|                .+ .++|.|..|+            +
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h----------------~~~~~~~~C~~C~------------~   53 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH----------------TENVAKFHCPHCD------------T   53 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHS----------------SSSCSSEECSSSS------------C
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhc----------------CCCCCccCCCCCC------------C
Confidence            34566666666666666666666666666666665 44                33 2566666666            6


Q ss_pred             ccCCHHHHHHHHHhhc
Q 040794          278 PLKDFRTLQTHYKRKH  293 (375)
Q Consensus       278 ~f~~~~~L~~H~r~H~  293 (375)
                      .|.....|.+|+++|+
T Consensus        54 ~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A           54 VIARKSDLGVHLRKQH   69 (77)
T ss_dssp             EESSHHHHHHHHHHTS
T ss_pred             ccCCHHHHHHHHHHhC
Confidence            6666666666666543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=92.42  Aligned_cols=55  Identities=25%  Similarity=0.414  Sum_probs=50.3

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhcC
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~  321 (375)
                      +++|.|..|+            +.|.....|..|+++|++++||.|..|++.|..+..|..|+++|.
T Consensus         2 ~~~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCG------------KFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTC------------CBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCc------------chhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4789999999            999999999999999999999999999999999999999999763

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.5e-14  Score=106.03  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             CCcCCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 040794          197 GQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRA  276 (375)
Q Consensus       197 ~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~  276 (375)
                      ....|..|+++|.++++|.|.+|++.|.....|..                       +++|.|..|+            
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-----------------------~~~~~C~~C~------------   46 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-----------------------RKTPMCEKCR------------   46 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-----------------------SSSCCCHHHH------------
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-----------------------CCCCCCCCCC------------
Confidence            35678999999999999999999999999888765                       2679999999            


Q ss_pred             cccCCHHHHHHHHHhhcCCCccccccc
Q 040794          277 KPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +.|.....|..|+++|++++||.|.+|
T Consensus        47 ~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           47 KDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             HTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            999999999999999999999999987

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.30  E-value=2.1e-12  Score=91.11  Aligned_cols=48  Identities=25%  Similarity=0.607  Sum_probs=26.7

Q ss_pred             ccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      ||.|..|++.|.....|..|+++|  +++|.| .|++.|.....|.+|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH
Confidence            355555555555555555555544  355555 555555555555566555

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=2.1e-12  Score=92.23  Aligned_cols=54  Identities=26%  Similarity=0.644  Sum_probs=30.6

Q ss_pred             CccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |||.|..|++.|.....|..|+++|  +++|.| .|++.|..+..|.+|++..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            3555555555555555555555554  455666 56666666666666653335543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.29  E-value=2.7e-12  Score=99.47  Aligned_cols=54  Identities=17%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHH
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ...+.|.|.+|+            +.|.....|.+|+++|+++|||.|.+|+++|.++..|.+|++
T Consensus        24 ~~~~~h~C~~Cg------------k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           24 ASAECHLCPVCG------------ESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             CCCTTEECTTSC------------CEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCCEECCCCC------------CCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            344556666666            666666666666666666666666666666666666666654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.27  E-value=4e-13  Score=111.21  Aligned_cols=81  Identities=12%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             CCCceecCccccccc------CchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHH
Q 040794          210 GPTQFSCPVCCKTFN------RYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFR  283 (375)
Q Consensus       210 g~kp~~C~~C~k~F~------~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~  283 (375)
                      .++.+.|.+|.+.|.      ....|..|+ .|                +++++|.|..|+            +.|....
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h----------------~~~~~~~C~~C~------------k~f~~~~   88 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-AS----------------KAISQFVCPLCL------------MPFSSSV   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HH----------------HHHCSEECTTTC------------CEESSHH
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-Hh----------------CCCCCeECCCCC------------cccCCHh
Confidence            345688998887776      566677776 57                678999999999            9999999


Q ss_pred             HHHHHHHhhcCCCccccccccccccChhhHHHHHHhcC
Q 040794          284 TLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       284 ~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~  321 (375)
                      .|..|+++|  ++||.|..||++|.++..|+.|+++|.
T Consensus        89 ~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           89 SLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             HHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            999999999  899999999999999999999999873

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=5.3e-12  Score=98.49  Aligned_cols=69  Identities=25%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHh-hcCCCccccccccccccChhhHHHHHHhcCCCeee-ecCcccCC
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKR-KHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICGSDFKH  334 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~-H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cgk~F~~  334 (375)
                      .++|..|+            +.|.....|.+|+++ |+++++..+..|                  ++|.| +|++.|..
T Consensus        25 ~~~C~~C~------------k~f~~~~~L~~H~~~~H~~~~~~~~~~c------------------~~~~C~~C~k~f~~   74 (95)
T 2ej4_A           25 SRPKKSCD------------RTFSTMHELVTHVTMEHVGGPEQNNHVC------------------YWEECPREGKSFKA   74 (95)
T ss_dssp             SSSCCCCC------------CCCSSHHHHHHHHHHTTTCCTTCSCCCC------------------CCTTCSSTTCCCSS
T ss_pred             CCcccccc------------cccCCHHHHHHHHHHhccCCCCCCccce------------------eccCCCCCCcccCC
Confidence            45677777            777777777777776 777666444433                  23888 89999999


Q ss_pred             hHHHHHHHHHhCCCCCCCCCCC
Q 040794          335 KRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       335 ~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                      +..|++|+++ |++++||+|+.
T Consensus        75 ~~~L~~H~~~-H~~~k~~~C~~   95 (95)
T 2ej4_A           75 KYKLVNHIRV-HTGEKSGPSSG   95 (95)
T ss_dssp             HHHHHHHHHH-HHTCCCCSSCC
T ss_pred             HHHHHHHHHh-cCCCCCCCCCC
Confidence            9999999998 88999999973

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=3.9e-12  Score=92.58  Aligned_cols=56  Identities=21%  Similarity=0.456  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHh-h-cCCCccccccccccccChhhHHHHHHhc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKR-K-HGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~-H-~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +++++|.|..|+            +.|.....|..|+++ | ++++||.|..|++.|.+++.|..|++++
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            6 EGEHTYRCKVCS------------RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             EETTEEECTTTC------------CEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCcceECCCCc------------chhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHH
Confidence            778999999999            999999999999998 7 6999999999999999999999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.23  E-value=8.7e-12  Score=87.85  Aligned_cols=52  Identities=23%  Similarity=0.552  Sum_probs=50.3

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +|.|..|+            +.|.....|..|+++|++++||.|..|++.|.....|..|+++|
T Consensus         1 p~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A            1 KYICEECG------------IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCBCTTTC------------CBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCcCCCCc------------CcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHh
Confidence            48899999            99999999999999999999999999999999999999999987

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=5.5e-12  Score=95.02  Aligned_cols=54  Identities=24%  Similarity=0.449  Sum_probs=30.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC---CCccccccccccccChhhHHHHHH
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG---IKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g---ekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++   +++|.|..|++.|..+..|..|++
T Consensus         3 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            3 SGSSGLQCEICG------------FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CSCCCEECSSSC------------CEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCcCeECCCCC------------CeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHH
Confidence            444555555555            555555555555555553   555555555555555555555553

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=6.8e-12  Score=93.17  Aligned_cols=54  Identities=24%  Similarity=0.600  Sum_probs=38.1

Q ss_pred             hhcCCCccccc--cccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHH
Q 040794          291 RKHGIKPFMCR--KCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       291 ~H~gekpy~C~--~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +|.++++|.|.  .|++.|..+..|..|+++|  +++|.| +||+.|..+..|.+|+++
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            45667777775  4777777777777777765  567777 777777777777777776

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=8.6e-12  Score=92.61  Aligned_cols=56  Identities=27%  Similarity=0.533  Sum_probs=53.4

Q ss_pred             CCCcccccC--CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          253 TGMLRLPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       253 ~~~~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      .++++|.|.  .|+            +.|.....|..|+++|+++++|.|..||+.|..+..|..|+++|
T Consensus        15 ~~~~~~~C~~~~C~------------k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESCD------------RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTBC------------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCCC------------CccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            778999997  599            99999999999999999999999999999999999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=95.00  Aligned_cols=62  Identities=21%  Similarity=0.198  Sum_probs=56.5

Q ss_pred             ceecCcccccccCchHHhhcccc-cCCCCCCCCCCcCCCCCCCCcc--------cccCCCCCCCCCCCCCCCCcccCCHH
Q 040794          213 QFSCPVCCKTFNRYNNMQMHMWG-HGSQYRKGPESLRGTQPTGMLR--------LPCYCCAPGCRNNIDHPRAKPLKDFR  283 (375)
Q Consensus       213 p~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~~~~~~--------~~C~~Cg~~~~~~~~h~~~k~f~~~~  283 (375)
                      .|.|..|++.|.....|..|+++ |                .+.++        |.|..|+            +.|....
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H----------------~~~~~~~~~~c~~~~C~~C~------------k~f~~~~   76 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEH----------------VGGPEQNNHVCYWEECPREG------------KSFKAKY   76 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTT----------------TCCTTCSCCCCCCTTCSSTT------------CCCSSHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhc----------------cCCCCCCccceeccCCCCCC------------cccCCHH
Confidence            47899999999999999999998 7                55555        8999999            9999999


Q ss_pred             HHHHHHHhhcCCCcccccc
Q 040794          284 TLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       284 ~L~~H~r~H~gekpy~C~~  302 (375)
                      .|.+|+++|++++||.|..
T Consensus        77 ~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           77 KLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             HHHHHHHHHHTCCCCSSCC
T ss_pred             HHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999963

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=1.4e-11  Score=87.81  Aligned_cols=54  Identities=26%  Similarity=0.541  Sum_probs=50.6

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHH-HhcC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHE-KNCG  321 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~-k~h~  321 (375)
                      ++|.|..|+            +.|.....|..|+++|++++||.|..|++.|.++..|..|+ ++|.
T Consensus         1 k~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCT------------RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTC------------CCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCc------------cccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            468999999            99999999999999999999999999999999999999997 5663

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.9e-11  Score=87.61  Aligned_cols=54  Identities=31%  Similarity=0.591  Sum_probs=45.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc-cccccccChhhHHHHHHhc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR-KCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~-~Cgk~F~~~~~L~~H~k~h  320 (375)
                      .+.++|.|..|+            +.|. ...|..|+++ ++++||.|. .||++|..++.|..|+++|
T Consensus         6 C~~~~~~C~~C~------------k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            6 SGKRTQPCTYCT------------KEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCCEEECSSSC------------CEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCCCCeeccccC------------CccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            677888888888            8888 8888888888 888888888 8888888888888888876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=4.7e-11  Score=87.18  Aligned_cols=58  Identities=24%  Similarity=0.453  Sum_probs=51.9

Q ss_pred             hcCCCccccccccccccChhhHHHHHHhc-CCCeee--ecCcccCChHHHHHHHHHhCCCCCC
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEKNC-GKLWYC--ICGSDFKHKRSLKDHIKAFGNGHAA  351 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-~k~~~C--~Cgk~F~~~~~L~~H~r~~H~ge~~  351 (375)
                      ..+++||.|..|+++|. ...|..|+++. ++||.|  .||+.|..++.|.+|+++ |...++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~-hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKD-SCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHT-TSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHh-hcccCc
Confidence            35689999999999999 99999999874 799999  599999999999999999 666655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=86.14  Aligned_cols=57  Identities=25%  Similarity=0.499  Sum_probs=47.7

Q ss_pred             CCCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc--ccccccChhhHHHHHHhc
Q 040794          252 PTGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK--CGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       252 ~~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~--Cgk~F~~~~~L~~H~k~h  320 (375)
                      ....++|.|..  |+            +.|.....|..|+++|++++||.|..  |++.|..+..|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCG------------KTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTC------------CEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCc------------cccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            35667888988  88            88999999999999999999999964  888888888888887754

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.6e-10  Score=77.85  Aligned_cols=45  Identities=27%  Similarity=0.353  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGT----------------SCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.02  E-value=2.3e-10  Score=77.10  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            8 TGEKPYECKECG------------KAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSCBCSSSC------------CBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCceECCCCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            778899999999            999999999999999999999999877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.01  E-value=1.8e-10  Score=77.40  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=42.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH----------------TGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGS----------------SSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.01  E-value=1.7e-10  Score=77.62  Aligned_cols=45  Identities=16%  Similarity=0.261  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH----------------VGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGG----------------SSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHc----------------CCCCCcCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.7e-10  Score=77.62  Aligned_cols=45  Identities=20%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      +|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH----------------SGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGG----------------SSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHh----------------cCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.9e-10  Score=77.45  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGT----------------SCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhc----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.1e-10  Score=77.14  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGG----------------SSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.8e-10  Score=77.57  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTT----------------CCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.3e-10  Score=76.87  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            8 TGEKLYNCKECG------------KSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCBTTTT------------BCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCCeECCCCC------------CccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            777888899888            888888899999888988889988877

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.1e-10  Score=77.10  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=34.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            8 TGERPHKCNECG------------KSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSC------------CEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCCeeCCCCC------------hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.2e-10  Score=77.10  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=35.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            8 TGKKPYKCNECG------------KVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSSCBCTTTC------------CBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCeECCCCC------------CeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            778899999999            999999999999999999999999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=77.74  Aligned_cols=45  Identities=20%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH----------------SGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHC----------------CSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3e-10  Score=76.31  Aligned_cols=39  Identities=23%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            8 TGEKPYKCSDCG------------KSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SSCCSCBCSSSC------------CBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCccCCccC------------hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            777889999999            999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.00  E-value=2.3e-10  Score=76.95  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            8 MGEKTWKCRECD------------MCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSSC------------CCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCCcCeECCCCC------------cccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            778899999999            999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.3e-10  Score=76.98  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            8 TGEKPYECSVCG------------KAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SSCCSEECSSSC------------CEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCCeeCCCcC------------CccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            778889999999            999999999999999999999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.99  E-value=1.8e-10  Score=77.51  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGG----------------GCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=1.6e-10  Score=80.98  Aligned_cols=48  Identities=17%  Similarity=0.216  Sum_probs=36.2

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHH-hhcCCCccccccccccccC
Q 040794          250 TQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYK-RKHGIKPFMCRKCGKAFAV  309 (375)
Q Consensus       250 ~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r-~H~gekpy~C~~Cgk~F~~  309 (375)
                      ..++++++|.|..|+            +.|.....|.+|++ +|++++||.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~------------k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCG------------KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSC------------CEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCC------------cccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            346677777777777            77777777777776 7777777777777777765

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=77.64  Aligned_cols=45  Identities=20%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHH----------------SCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2e-10  Score=77.25  Aligned_cols=45  Identities=20%  Similarity=0.363  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTT----------------SSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            6889999999999999999999999999999999                88899999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.4e-10  Score=76.87  Aligned_cols=45  Identities=20%  Similarity=0.229  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGG----------------TTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3e-10  Score=76.41  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            8 TGEKPFKCDICG------------KSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCSSSC------------CCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCcCCCcCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777889999999            899999999999999999999999877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.6e-10  Score=76.62  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            8 TGEKPHECRECG------------KSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCBCTTTC------------CBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCCeeCCCCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            778889999999            999999999999999999999999877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2e-10  Score=77.20  Aligned_cols=45  Identities=20%  Similarity=0.221  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH----------------TGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTT----------------TTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.99  E-value=2.5e-10  Score=76.71  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH----------------SGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGG----------------TSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.2e-10  Score=77.14  Aligned_cols=45  Identities=16%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTT----------------SCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            6889999999999999999999999999999999                88899999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2e-10  Score=77.34  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH----------------TKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHT----------------SCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            6889999999999999999999999999999999                88899999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=76.79  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            8 TGEKPYKCNECG------------KVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEETTTT------------EECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCeECCCcC------------hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999877

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.6e-10  Score=76.73  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            8 TGENPYECHECG------------KAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCEECSSSC------------CEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCcCcCCCCCC------------cccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999877

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.6e-10  Score=76.65  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=42.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGG----------------CCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            6889999999999999999999999999999999                88899999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=76.89  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|...+.|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            8 TGVKPYMCNECG------------KAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSC------------CEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCCcCeECCCCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888899888            888888899999888988889888877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.1e-10  Score=77.15  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH----------------TGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGG----------------SCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.4e-10  Score=76.91  Aligned_cols=39  Identities=31%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            8 TGERPYICTVCG------------KAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECTTTC------------CEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCcCCCCCC------------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            777888999998            888888999999989988899988876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.9e-10  Score=76.42  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=35.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            8 TGEKPYKCNECG------------KAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCTTCCTTTC------------CCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCcCCCCCC------------CccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            778899999999            999999999999999999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.98  E-value=2.8e-10  Score=76.63  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=33.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            8 TGEKPFKCVECG------------KGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSBCCSSSC------------CCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCcccCccC------------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888877

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.1e-10  Score=76.32  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=35.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            8 TGEKPFDCIDCG------------KAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSBCCTTTC------------CCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCeECCCCC------------ceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            778889999999            999999999999999999999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.7e-10  Score=76.67  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGG----------------SCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.3e-10  Score=76.89  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH----------------VDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHC----------------CSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.3e-10  Score=76.95  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=42.5

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTT----------------CCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.98  E-value=2.6e-10  Score=76.69  Aligned_cols=39  Identities=31%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            8 TGEKRYKCNECG------------KVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTSCCEECSSSC------------CEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCcCcCCCCCc------------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            777889999998            889999999999999999999998876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.4e-10  Score=76.79  Aligned_cols=45  Identities=18%  Similarity=0.222  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVH----------------MGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTT----------------CCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.8e-10  Score=75.79  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCCE------------KAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSSS------------CEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCccCCCCC------------cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.2e-10  Score=77.07  Aligned_cols=45  Identities=22%  Similarity=0.237  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTT----------------TTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=76.91  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH----------------MGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGG----------------GSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            4788999999999999999999999999999999                78899999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.4e-10  Score=77.00  Aligned_cols=45  Identities=20%  Similarity=0.334  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH----------------SGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTT----------------CCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=76.57  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            8 SGEKPYKCNECG------------KVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSEECSSSC------------CEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCCEeCCcCC------------CccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            777889999998            889999999999999999999998877

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=3.9e-10  Score=78.93  Aligned_cols=45  Identities=24%  Similarity=0.412  Sum_probs=41.3

Q ss_pred             hhcCCCccccccccccccChhhHHHHHH-hc--CCCeee-ecCcccCCh
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEK-NC--GKLWYC-ICGSDFKHK  335 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k-~h--~k~~~C-~Cgk~F~~~  335 (375)
                      .|++++||.|.+|++.|.++..|+.|++ +|  +++|.| +|++.|+++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            4788999999999999999999999997 77  799999 999999863

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.98  E-value=1.8e-10  Score=77.61  Aligned_cols=45  Identities=20%  Similarity=0.283  Sum_probs=42.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      +|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHH----------------SSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=77.93  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=43.1

Q ss_pred             CCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          202 PTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       202 ~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      ..|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH----------------FREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHH----------------HSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHH----------------cCCCCCCCCCC
Confidence            36889999999999999999999999999999999                78899999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=76.77  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=34.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|...+.|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            8 TGEKPYKCNECG------------KVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSEECSSSC------------CEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCeECCCCC------------chhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            777889999998            889999999999999999999998877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.98  E-value=2.1e-10  Score=77.08  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            8 TGVKPYGCSQCA------------KTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSS------------CEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCceECCCCC------------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            778889999998            899999999999999999999999877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.1e-10  Score=76.34  Aligned_cols=39  Identities=21%  Similarity=0.347  Sum_probs=34.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            8 SGEKPYKCSECG------------KAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCCcCeECCCCC------------CeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            777889999998            889999999999999999999998877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.3e-10  Score=76.25  Aligned_cols=39  Identities=18%  Similarity=0.102  Sum_probs=35.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            8 SVEKPYKCEDCG------------KGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSSCBCSSSC------------CBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCeeCcccC------------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            778899999999            999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=77.24  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH----------------AGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHH----------------TTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2e-10  Score=76.51  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=41.7

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      |+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH----------------AEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHH----------------TSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            678899999999999999999999999999999                88899999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3e-10  Score=76.42  Aligned_cols=39  Identities=26%  Similarity=0.195  Sum_probs=32.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            8 TGEKPYICAECG------------KAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCCSEECSSSC------------CEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCcCeECCCCC------------hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=76.17  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            8 AGEKPYGCSECG------------KAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSCBCSSSC------------CBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCCcCCCccC------------hhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            778889999999            899999999999999999999999877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=76.54  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=33.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            8 TGEKPYECSICG------------KSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSC------------CEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCcCcCCCCCC------------cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.4e-10  Score=76.94  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=33.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|...+.|..|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            8 SGERPYGCNECG------------KNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             SCCCCEECSSSC------------CEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCEEccccC------------cccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            777888888888            888888888888888888888888876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.97  E-value=2.1e-10  Score=77.24  Aligned_cols=45  Identities=24%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHH----------------SCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=76.58  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=34.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            8 TGEKPYKCHECG------------KVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCEECTTTC------------CEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCeECCCCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888898888            888888899999888988889888877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.97  E-value=3.1e-10  Score=76.44  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH----------------TREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGG----------------CCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5788999999999999999999999999999999                88899999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.1e-10  Score=77.14  Aligned_cols=45  Identities=20%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHH----------------SSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHH----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.2e-10  Score=77.03  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTT----------------TTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.6e-10  Score=76.70  Aligned_cols=45  Identities=24%  Similarity=0.303  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH----------------TGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTS----------------CSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhh----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=76.00  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            8 SGEKPYVCDYCG------------KAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCeECCCCC------------hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.3e-10  Score=76.94  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=42.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH----------------TGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHH----------------TCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.7e-10  Score=76.68  Aligned_cols=39  Identities=31%  Similarity=0.349  Sum_probs=34.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            8 TGGKHFECTECG------------KAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCEECSSSC------------CEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCCeECCCCC------------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.9e-10  Score=76.57  Aligned_cols=39  Identities=18%  Similarity=0.202  Sum_probs=34.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            8 SSTKSHQCHECG------------RGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSEECSSSC------------CEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCeECCcCC------------CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999999            999999999999999999999999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.2e-10  Score=76.97  Aligned_cols=45  Identities=20%  Similarity=0.315  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH----------------TGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHH----------------SCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=77.64  Aligned_cols=45  Identities=24%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHH----------------HCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3e-10  Score=76.40  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTT----------------TTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3e-10  Score=76.32  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=34.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            8 SGEKSHTCDECG------------KNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCSSEECTTTC------------CEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCCeECCCcC------------cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999998            889999999999999999999998877

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2e-10  Score=77.31  Aligned_cols=45  Identities=20%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH----------------TGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHH----------------HSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhc----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                78899999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.96  E-value=7.6e-11  Score=82.54  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             CcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          276 AKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       276 ~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      .|.|.....|..|+++|++++||.|..||+.|.+.+.|..|+++|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   47 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHh
Confidence            366666667777777777777777766666666555555555544

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.5e-10  Score=76.80  Aligned_cols=45  Identities=20%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH----------------TAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHT----------------TCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                88899999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=3.2e-10  Score=76.24  Aligned_cols=39  Identities=31%  Similarity=0.256  Sum_probs=35.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEECG------------KGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSC------------CEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCcCccCCCcc------------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999999            999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.3e-10  Score=75.75  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=34.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            8 TGEKPYKCMECG------------KAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSCCSSSBTTTT------------BCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcCCCCCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888898888            888888889999888888888888877

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.9e-10  Score=77.39  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHH----------------HCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5889999999999999999999999999999999                78899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.2e-10  Score=76.24  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH----------------SGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHS----------------CCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5788999999999999999999999999999999                88899999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.95  E-value=3.5e-10  Score=76.00  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=34.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            8 TGEKPYNCKECG------------KSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCcCeECCccc------------cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.2e-10  Score=76.19  Aligned_cols=39  Identities=21%  Similarity=0.074  Sum_probs=32.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            8 TGEKPCKCTECG------------KAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCCeeCCCCC------------CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            677888888888            888888888888888888888888776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.95  E-value=4.3e-10  Score=75.71  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            8 AGVNPYKCSQCE------------KSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSS------------CEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCeECCCCC------------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            778889999998            899999999999999999999999877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.8e-10  Score=75.92  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            8 SGEKPYGCNECG------------KTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCEEETTTT------------EEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCcCeECCCCC------------cccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=4.8e-10  Score=75.38  Aligned_cols=39  Identities=15%  Similarity=0.111  Sum_probs=34.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            8 SREKSHQCRECG------------EIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCCCEECTTTC------------CEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCCEEccccC------------hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777889999998            899999999999999999999999877

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.6e-10  Score=76.75  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            8 TGEKPYKCNECG------------KVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCSSEECSSSC------------CEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCeECCcCC------------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888776

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.7e-10  Score=76.65  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=42.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHH----------------SSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.7e-10  Score=75.44  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            8 SGEKPFKCEECG------------KGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCcCCCCCC------------CcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888877

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4e-10  Score=75.96  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhccc-ccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMW-GHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|++ +|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H----------------~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH----------------TGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTT----------------TTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhc----------------CCCCCCCCCCC
Confidence            58899999999999999999999999999999 99                88899999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.9e-10  Score=75.41  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=34.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            8 SGEKPYKCVECG------------KGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CSCCSEECSSSC------------CEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCeECcccC------------chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            777889999998            889889999999999999999998877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.6e-10  Score=75.99  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            8 SGEKPFKCEECG------------KRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEEETTTT------------EEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCeeCCCCC------------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.6e-10  Score=75.98  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            8 TGEKPYKCEKCG------------KGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SSCCSEEETTTT------------EEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCeECCCCC------------CccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            777888888888            888888888888888888888888877

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.3e-10  Score=75.62  Aligned_cols=39  Identities=33%  Similarity=0.355  Sum_probs=33.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            8 TGEKPYRCAECG------------KAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSC------------CEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCeECCCCC------------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888898888            888888888889888888888888765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.93  E-value=1e-10  Score=84.54  Aligned_cols=55  Identities=15%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             HhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccccccccc
Q 040794          229 MQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFA  308 (375)
Q Consensus       229 L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~  308 (375)
                      |..|+++|                +++++|.|..|+            +.|.....|.   ++|++++||.|..||+.|.
T Consensus         2 L~~h~~~H----------------~~~k~~~C~~C~------------k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~   50 (62)
T 1vd4_A            2 IETDERDS----------------TNRASFKCPVCS------------STFTDLEANQ---LFDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CCCCSSSC----------------CSSSEEECSSSC------------CEEEHHHHHH---HEETTTTEEBCSSSCCBCE
T ss_pred             hhhHHHHc----------------CCCCCccCCCCC------------chhccHHHhH---hhcCCCCCEECCCCCCccc
Confidence            45677788                778889999998            8888877776   7888899999999999988


Q ss_pred             ChhhHH
Q 040794          309 VRGDWR  314 (375)
Q Consensus       309 ~~~~L~  314 (375)
                      ...++.
T Consensus        51 ~~~~~~   56 (62)
T 1vd4_A           51 EDESAM   56 (62)
T ss_dssp             ECTTCS
T ss_pred             cCcccc
Confidence            776653

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.7e-10  Score=75.94  Aligned_cols=45  Identities=16%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLH----------------MGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHH----------------SCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5788999999999999999999999999999999                88899999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.7e-10  Score=76.66  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.+|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            8 TGEKPFKCGECG------------KSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCSEECTTTC------------CEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCeECCCCC------------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777889999998            889989999999999999999998877

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6.9e-10  Score=74.78  Aligned_cols=39  Identities=26%  Similarity=0.368  Sum_probs=34.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHH-hhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYK-RKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r-~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|++ +|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            8 TGKKPYECIECG------------KAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCSBCCSSSC------------CCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCCEECCccC------------chhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            778889999998            89999999999998 8999999999877

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3e-10  Score=76.59  Aligned_cols=45  Identities=20%  Similarity=0.242  Sum_probs=42.5

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH----------------TGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHH----------------HSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            4788999999999999999999999999999999                78899999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.6e-10  Score=76.07  Aligned_cols=45  Identities=20%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH----------------TGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHH----------------HCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHH----------------cCCCCCCCCCC
Confidence            5788999999999999999999999999999999                78899999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.2e-10  Score=74.91  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=42.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHH----------------CCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                88899999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.5e-10  Score=73.95  Aligned_cols=39  Identities=23%  Similarity=0.354  Sum_probs=33.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            8 SGEKPFKCKECG------------KAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCEECCcCC------------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777888898888            888888889999888988888888765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=80.73  Aligned_cols=59  Identities=20%  Similarity=0.368  Sum_probs=53.1

Q ss_pred             ccccCCCceecCc--ccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC--CCCCCCCCCCCCCCcccCC
Q 040794          206 QILIGPTQFSCPV--CCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC--CAPGCRNNIDHPRAKPLKD  281 (375)
Q Consensus       206 ~~h~g~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~  281 (375)
                      ......++|.|..  |++.|.....|..|+++|                +++++|.|.+  |+            +.|..
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~~~C~------------k~f~~   61 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH----------------TGEKPFSCSWKGCE------------RRFAR   61 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHH----------------SSSCSEECCCTTCC------------CEESS
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhc----------------CCCCCccCCCCCCC------------cccCC
Confidence            3456678999998  999999999999999999                7889999965  99            99999


Q ss_pred             HHHHHHHHHhh
Q 040794          282 FRTLQTHYKRK  292 (375)
Q Consensus       282 ~~~L~~H~r~H  292 (375)
                      ...|.+|+++|
T Consensus        62 ~~~l~~H~~~H   72 (72)
T 2epa_A           62 SDELSRHRRTH   72 (72)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHhHhhcC
Confidence            99999999876

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=73.60  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|+|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTT----------------SCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999964

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.2e-09  Score=73.44  Aligned_cols=44  Identities=20%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|..|++.|.....|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTT----------------TTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhh----------------CCCCCCCCCC
Confidence            5888999999999999999999999999999999                8889999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.86  E-value=9.7e-10  Score=73.92  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHH----------------TTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.4e-09  Score=73.01  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|..|++.|....+|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGT----------------SSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhc----------------CCCCCcCCCC
Confidence            5888999999999999999999999999999999                7889999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.85  E-value=1.3e-09  Score=71.71  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=39.1

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      |+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTH----------------AGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGG----------------CCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhc----------------CCCCCCCCC
Confidence            678899999999999999999999999999999                788899884

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.4e-09  Score=73.01  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH----------------RGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGG----------------CSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.2e-09  Score=73.30  Aligned_cols=44  Identities=20%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGG----------------CCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2.3e-09  Score=70.33  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=31.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            6 SGEKPYSCAECK------------ETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSCCSCBCTTTC------------CBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCCeECCCCC------------CccCCHHHHHHHHHHhCCCCCCCCC
Confidence            777888888888            8888888888888888888888874

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.4e-09  Score=72.98  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      ++++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH----------------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTT----------------SSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            467899999999999999999999999999999                78899999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.85  E-value=1.6e-09  Score=72.83  Aligned_cols=38  Identities=29%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            8 TGEKPFECAECG------------KSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSS------------CEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCEECCCCC------------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            777888888888            88888888888888888888888863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.8e-09  Score=72.51  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=33.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            8 TGEKPYKCNECG------------KVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCBCSSSC------------CBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCeECCCCC------------cccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            777889999998            88999999999999999999988863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.85  E-value=1e-09  Score=76.72  Aligned_cols=52  Identities=17%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             cccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccc
Q 040794          220 CKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM  299 (375)
Q Consensus       220 ~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~  299 (375)
                      +|.|.....|..|+++|                +++++|.|..|+            +.|...+.|..|+++|+|++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H----------------~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRS----------------QSEQPATCPICY------------AVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHH----------------TSSCCEECTTTC------------CEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhc----------------CCCCCccCCCCC------------cccCCHHHHHHHHHHhccCCCCC
Confidence            57889999999999999                888999999999            99999999999999999999984

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=71.39  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=39.2

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH----------------TGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGT----------------SCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHh----------------CCCCCCCC
Confidence            4788999999999999999999999999999999                77888887

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=73.06  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH----------------TGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGG----------------SSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=72.53  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            8 TGQRPYECIECG------------KAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSEECSSSC------------CEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCCcCcCCCCCC------------CccCCHHHHHHHHHhcCCCCCCCCC
Confidence            777888888888            8888888888888888888888886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.1e-09  Score=72.06  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=33.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            8 TGEKPYECSDCG------------KSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SSCCSSCCSSSC------------CCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCcCCCCCC------------chhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            778889999999            99999999999999999999999863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.8e-09  Score=72.35  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            8 TGEKPYKCNECG------------KAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCEECTTSC------------CEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCeeccccC------------ChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            777889999998            88999999999999999999988863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.6e-09  Score=72.80  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGG----------------TTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.2e-09  Score=73.31  Aligned_cols=44  Identities=23%  Similarity=0.365  Sum_probs=41.2

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHH----------------CCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            6889999999999999999999999999999999                7889999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=72.93  Aligned_cols=44  Identities=27%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTS----------------CSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5888999999999999999999999999999999                8889999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=73.07  Aligned_cols=44  Identities=25%  Similarity=0.320  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH----------------TGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTT----------------SCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.84  E-value=2e-09  Score=70.77  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            6 SGENPYECSECG------------KAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSCCSEECSSSC------------CEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCccCCCcC------------hhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            777888888888            8888888888888888888888874

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=73.43  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHH----------------SSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                8889999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.5e-09  Score=72.76  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTT----------------SSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.9e-09  Score=72.34  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            8 TGGKPYQCNECG------------KAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCSSSCCSSC------------CCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCCeECCCCC------------cccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            777889999998            89999999999999999999998863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2e-09  Score=72.31  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=33.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            8 SGEKPFQCEECG------------KRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSBCCSSSC------------CCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCcCCCCCCCC------------cccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            777889999998            89999999999999999999998863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=73.09  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTT----------------CCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.2e-09  Score=72.06  Aligned_cols=37  Identities=27%  Similarity=0.304  Sum_probs=33.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            8 TGENPFICSECG------------KVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CSCCSCBCTTTC------------CBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCEECCccC------------cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            778889999999            9999999999999999999999886

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.6e-09  Score=72.81  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTT----------------SSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHc----------------CCCCCCCCCC
Confidence            5888999999999999999999999999999999                8889999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.7e-09  Score=72.67  Aligned_cols=37  Identities=30%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            8 TGERHYECSECG------------KAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCEECSSSC------------CEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CCCCCeECCcCC------------cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            777888888888            8888888888888888888888886

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.3e-09  Score=73.07  Aligned_cols=44  Identities=18%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH----------------SGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHH----------------CCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                8889999964

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.4e-09  Score=73.09  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTT----------------SCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhc----------------CCCCCCCCCC
Confidence            5888999999999999999999999999999999                7889999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.1e-09  Score=72.18  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            8 TGEKPYKCNECG------------KVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCTTCCSSSC------------CCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCeECCCCC------------cccCChhHHHHHhHhcCCCCCCCCCC
Confidence            777889999999            89999999999999999999998863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.7e-09  Score=72.72  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=40.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH----------------SGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTT----------------TSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhc----------------CCCCCCCCCC
Confidence            4788999999999999999999999999999999                7889999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.2e-09  Score=72.08  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..
T Consensus         8 ~~~~~~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            8 TGEKPYECKVCS------------KAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCSEECSSSC------------CEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCcCeECCCCC------------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            777888888888            88888888888888888888888863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.2e-09  Score=72.12  Aligned_cols=38  Identities=29%  Similarity=0.369  Sum_probs=33.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|..
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            8 MGEKCYKCDVCG------------KEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCBCSSSC------------CBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCCCeECCCCC------------cccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            777889999998            89999999999999999999998863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2.1e-09  Score=71.45  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|..|++.|....+|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTH----------------AAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGG----------------CCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHc----------------CCCCCcCCC
Confidence            6889999999999999999999999999999999                788899884

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.6e-09  Score=71.73  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            8 SGKKPYECKECR------------KTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCSCSCCCSSSC------------CCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCcC------------chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            777888898888            8888888898998888888888885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.4e-09  Score=71.02  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            8 TGMKPYVCNECG------------KAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSSCCTTTC------------CCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCeECCCCC------------CccCCHHHHHHHhhhcCCCCCCCCC
Confidence            778889999999            9999999999999999999999884

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.82  E-value=5.9e-10  Score=80.47  Aligned_cols=45  Identities=27%  Similarity=0.441  Sum_probs=42.1

Q ss_pred             CCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCC
Q 040794          201 IPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCA  264 (375)
Q Consensus       201 l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg  264 (375)
                      |..|+++|++++||.|+.|++.|.....|.   ++|                +++++|.|..|+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H----------------~~~k~~~C~~C~   46 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFD----------------PMTGTFRCTFCH   46 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEE----------------TTTTEEBCSSSC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhc----------------CCCCCEECCCCC
Confidence            678999999999999999999999999887   788                888999999999

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2e-09  Score=72.23  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            8 TGEKPFECSECQ------------KAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCcCCCCCC------------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            777888888888            88888888888888888888888863

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3e-09  Score=71.43  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|..
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            8 AGKKLFKCNECK------------KTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCBCTTTC------------CBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCEECCccC------------cccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            777888898888            88888888999988898888888863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=71.95  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=40.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH----------------SGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTS----------------SSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHc----------------CCCCCCCCC
Confidence            5889999999999999999999999999999999                778889884

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.1e-09  Score=72.18  Aligned_cols=39  Identities=26%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            8 TGEKPYKCDVCH------------KSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCSEECSSSC------------CEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCeeCcccC------------cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            777888898888            888888899999888988888888877

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.5e-09  Score=71.82  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=32.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            8 TGEKPYKCSDCG------------KAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CSCCCEECSSSC------------CEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCCEECcccC------------CccCCHhHHHHHHHHcCCCCCCCCC
Confidence            777889999998            8899999999999999999999886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.6e-09  Score=71.72  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            8 TGEKPYKCNECG------------KAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCTTTT------------CCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CCCCCeECCcCC------------hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            778889999998            8999999999999999999999886

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=72.26  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            8 TGEKPYICNECG------------KSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCSEECSSSC------------CEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCcCEECCCCC------------hhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            777888888888            88888888888888888888888863

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=2.3e-09  Score=72.90  Aligned_cols=41  Identities=22%  Similarity=0.400  Sum_probs=37.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGK  305 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk  305 (375)
                      .++++|.|..|+            +.|.....|.+|+++|++++||.|.+|+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEICG------------KIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTTT------------EEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcCeeCCCCC------------cccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            667889999999            99999999999999999999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=71.69  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=40.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH----------------TGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHT----------------TTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHh----------------CCCCCCCCC
Confidence            5888999999999999999999999999999999                788899884

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.2e-09  Score=72.15  Aligned_cols=44  Identities=23%  Similarity=0.228  Sum_probs=40.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCC-CcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTG-MLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~-~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                ++ +++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH----------------TRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTC----------------CSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            5888999999999999999999999999999999                77 88999863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.2e-09  Score=71.95  Aligned_cols=37  Identities=30%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            8 TGEKPYNCEECG------------KAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCSEECTTTC------------CEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCccCCCCC------------CCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            677888888888            8888888888888888888888885

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=72.75  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|+|.+|++.|.+...|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH----------------TGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHH----------------TCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                8889999863

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.6e-09  Score=71.15  Aligned_cols=42  Identities=26%  Similarity=0.252  Sum_probs=38.9

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      |+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMH----------------TVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHT----------------SCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHh----------------CCCCCCCCC
Confidence            678899999999999999999999999999999                778888884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.6e-09  Score=72.86  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=40.9

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH----------------TQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHH----------------SSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.6e-09  Score=70.78  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|+
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            8 TGEKPYECNECQ------------KAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSEECTTTC------------CEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCeECCCCC------------cccCCHhHHHHHHHHhCCCCCCCCC
Confidence            777888888888            8888888888888888888888874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.8e-09  Score=71.66  Aligned_cols=43  Identities=21%  Similarity=0.317  Sum_probs=40.2

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH----------------TGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTT----------------CCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhc----------------CCCCCCCCC
Confidence            5888999999999999999999999999999999                788899884

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=72.66  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=40.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH----------------TGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHC----------------SSCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5888999999999999999999999999999999                7889999863

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=1.6e-09  Score=72.53  Aligned_cols=43  Identities=28%  Similarity=0.499  Sum_probs=40.4

Q ss_pred             ccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCC
Q 040794          206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCA  264 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg  264 (375)
                      .+|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H----------------~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSH----------------DGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHH----------------SCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHc----------------cCCCCCCCcCCC
Confidence            4688999999999999999999999999999                888999999996

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=71.56  Aligned_cols=43  Identities=19%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|++++||.|.+|++.|....+|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH----------------ARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHC----------------CCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhc----------------CCCCCCCCC
Confidence            5888999999999999999999999999999999                788888884

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.9e-09  Score=71.42  Aligned_cols=37  Identities=30%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~~~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            8 TGERHYECSECG------------KAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             SSCCCEECSSSC------------CEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCCCCCCCCCC------------cccCCHHHHHHHHhHhCCCCCCCCC
Confidence            777888888888            8888888888888888888888885

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.8e-09  Score=72.61  Aligned_cols=44  Identities=25%  Similarity=0.334  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHH----------------TSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHc----------------CCCCCCCCCC
Confidence            5788999999999999999999999999999999                8889999964

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=73.06  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHH----------------HSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhc----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.8e-09  Score=71.63  Aligned_cols=44  Identities=20%  Similarity=0.332  Sum_probs=40.5

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH----------------SGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGS----------------CCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            4788999999999999999999999999999999                7889999863

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=3.1e-09  Score=71.04  Aligned_cols=40  Identities=18%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG  304 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cg  304 (375)
                      +++++|.|..|+            +.|.....|.+|+++|+++++|.|+.||
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            6 SGEKPYSCPVCG------------LRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SSCCSSEETTTT------------EECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCCcCCCCC------------cccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            677888899988            8888888999999999999999988886

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.5e-09  Score=71.66  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            8 TGEKPYRCGECG------------KAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCEECSSSC------------CEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCCeECCCCC------------CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            777888888888            8888888888888888888888885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.5e-09  Score=71.87  Aligned_cols=37  Identities=19%  Similarity=0.172  Sum_probs=30.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            8 TGEKPYSCNVCG------------KAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SSCCSEEETTTT------------EEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CCCCCeECcccC------------hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            677888888888            8888888888888888888888885

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.3e-09  Score=72.01  Aligned_cols=39  Identities=21%  Similarity=0.246  Sum_probs=34.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+|
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            8 EGEKPYQCSECG------------KSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCCCTTCCSSSC------------CCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCeeCCCCC------------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777888888888            888888888889888888888888877

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.8e-09  Score=71.66  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            8 TGEKPYKCQVCG------------KAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSCCSCBCSSSC------------CBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCcccCCCCCC------------cccCcHHHHHHHHHhcCCCCCCCCC
Confidence            777889999998            8899999999999999999999886

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.4e-09  Score=71.82  Aligned_cols=44  Identities=20%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH----------------TGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTS----------------CCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7889999863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.2e-09  Score=70.43  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC  300 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C  300 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|
T Consensus         7 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            7 GGEKPYRCDQCG------------KAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CSCCSBCCTTTT------------CCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCCeeCCCcc------------chhCCHHHHHHHHHHhCCCCCCCC
Confidence            777888888888            888888888888888888888877

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.5e-09  Score=70.32  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=38.9

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C   42 (42)
T 2eos_A            1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH----------------TGSGPSSG   42 (42)
T ss_dssp             CCCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTT----------------SCCSSTTC
T ss_pred             CCCcccCCCCCEECCCCCCccCCHHHHHHHHHhc----------------CCCCCCCC
Confidence            3788999999999999999999999999999999                77788887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.4e-09  Score=71.11  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH----------------TRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHH----------------CCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHh----------------CCCCCCCCC
Confidence            5889999999999999999999999999999999                788888873

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=3e-09  Score=70.58  Aligned_cols=37  Identities=24%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            8 TGENPYECCECG------------KVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SSCCSCEETTTT------------EECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCCcCeeCCCCC------------CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            677888888888            8888888888888888888888874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=3.3e-09  Score=71.26  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            8 SGERPFKCNECG------------KGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCCCSCCCSSSC------------CCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCeECCCCC------------cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            677788888888            8888888888888888888888875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.9e-09  Score=69.39  Aligned_cols=36  Identities=25%  Similarity=0.527  Sum_probs=30.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC  300 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C  300 (375)
                      +++++|.|..|+            +.|...+.|..|+++|++++||.|
T Consensus         7 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            7 GGEKPYPCEICG------------TRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSSCCBCCSSSC------------CCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCCEECCCCC------------CccCCHHHHHHHHHhcCCCCCCCC
Confidence            777888888888            888888888888888888888877

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.77  E-value=2.6e-09  Score=70.08  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      |+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H----------------~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC----------------SQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHT----------------TCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhc----------------CCCCCCCC
Confidence            778899999999999999999999999999999                78888887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.77  E-value=4.6e-09  Score=68.86  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC  300 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C  300 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|
T Consensus         7 ~~~~~~~C~~C~------------k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            7 GGETPYLCGQCG------------KSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSSCCEECSSSC------------CEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCeECCCCC------------cccCCHHHHHHHhhhcCCCCCCCC
Confidence            666777777777            777777777777777777777776

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.5e-09  Score=72.91  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH----------------TREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHH----------------HHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHc----------------CCCCCCCCCCC
Confidence            457899999999999999999999999999999                78899999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.2e-09  Score=70.51  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=28.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            8 AGENPFKCSKCD------------RVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             SCCCSEECSSSS------------CEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCCeECCCCC------------chhCCHHHHHHHhHhcCCCCCCCCC
Confidence            666777777777            7777777777777777777777773

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.3e-09  Score=69.62  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC  300 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C  300 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|
T Consensus         7 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            7 GGEKPYKCETCG------------ARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CSSCSEECTTTC------------CEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCCEeCCCcC------------hhhCCHHHHHHHHHHcCCCCCCCC
Confidence            666777777777            777777777777777777777776

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.8e-09  Score=70.91  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      |+++|+++++|.|..|++.|.+...|..|+++|                +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH----------------TGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHH----------------HSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHc----------------CCCCCCCC
Confidence            788999999999999999999999999999999                77888887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4e-09  Score=70.02  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            8 HTRKRYECSKCQ------------ATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSSEECTTTC------------CEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCCeECCCCC------------CccCCHHHHHHHHHHcCCCCCcCCC
Confidence            777889999999            9999999999999999999999884

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.7e-09  Score=70.84  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            8 TGEKPYECNQCG------------KAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSEETTTT------------EECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCeECCCCC------------hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            777888888888            8888888888888888888888885

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.2e-09  Score=70.70  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=31.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            8 TGEKPYECDVCR------------KAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCSSSCBCTTTC------------CBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCcC------------chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            777888888888            8888888888888888888888885

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=6.6e-09  Score=69.03  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=32.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~~~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            8 AAKTTSECQECG------------KIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSSCCCCCTTTC------------CCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCcCeECCCCC------------cccCCHHHHHHHHHHHCCCCCCCCC
Confidence            777889999998            8899999999999999999998884

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=72.04  Aligned_cols=43  Identities=16%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|.+|++.|.....|..|+++|                +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH----------------ERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHH----------------HHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHh----------------CCCCCCCCC
Confidence            5889999999999999999999999999999999                778899885

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.9e-09  Score=69.76  Aligned_cols=42  Identities=19%  Similarity=0.318  Sum_probs=39.1

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      .|+++|+++++|.|.+|++.|.+...|..|+++|                +++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH----------------AGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGG----------------SSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHh----------------cCCCCCCC
Confidence            5889999999999999999999999999999999                77788876

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=1e-08  Score=75.45  Aligned_cols=45  Identities=22%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             cCCCeee-e--cCcccCChHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 040794          320 CGKLWYC-I--CGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPA  364 (375)
Q Consensus       320 h~k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~~~~~~~~  364 (375)
                      ++|||.| .  |+|+|.+++.|.+|+++.|+++|||-|-.-|++-++.
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~~~~~~~   71 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEESGPS   71 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCCCCCCCC
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccccccccccC
Confidence            5788888 5  9999999999999984339999999997766554443

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2e-09  Score=72.32  Aligned_cols=44  Identities=20%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      .|+++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH----------------SREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHH----------------HHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHh----------------CCCCCCCCCC
Confidence            5889999999999999999999999999999999                7888999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.8e-09  Score=70.43  Aligned_cols=45  Identities=20%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             CccccccCCCceecC--cccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCC
Q 040794          203 TPSQILIGPTQFSCP--VCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCC  263 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~C  263 (375)
                      .|.++|+++++|.|.  .|++.|.....|..|+++|                +++++|.|..|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH----------------SGVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTS----------------CCCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHh----------------CCCCCCCCCCC
Confidence            366789999999998  8999999999999999999                88899999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.7e-09  Score=70.49  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=33.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC-CCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG-IKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g-ekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|..|+++|++ ++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            8 QKEKCFKCNKCE------------KTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCSCCEECSSSC------------CEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCCCCEECcCCC------------CcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            777889999998            889999999999999998 89998863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.6e-09  Score=70.96  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=27.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            8 TGEKPFQCKECG------------MNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSEECSSSC------------CEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCCeeCcccC------------hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            666777777777            7777777777777777777777774

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=7.3e-09  Score=70.32  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=39.3

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCA  264 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg  264 (375)
                      .|.++++|.|.+|++.|.+...|..|+++|                +++++|.|.+|+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH----------------SGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGS----------------CSCCCCCSCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhc----------------CCCCCccCCCCC
Confidence            467788999999999999999999999999                888999999998

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=4.3e-10  Score=87.51  Aligned_cols=49  Identities=10%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             CCCCccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCCCC
Q 040794          200 WIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCA  264 (375)
Q Consensus       200 ~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg  264 (375)
                      ++..+.++|+++++|.|.+|++.|....+|..|+++|                +++++|.|..|.
T Consensus        12 ~~~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~H----------------t~ekp~~C~~~~   60 (88)
T 1x6f_A           12 FIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIH----------------NEEFQKRAKRQE   60 (88)
T ss_dssp             CCCCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHH----------------HHHHHHHCCCCS
T ss_pred             eeeccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHh----------------CCCCCcccchhh
Confidence            3444455666777777777777777777777777666                556666665554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8e-09  Score=68.69  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=31.5

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|...+.|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            8 SGEKPYECNECG------------KAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCSEECSSSC------------CEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcCeECCCCC------------cccCchHHHHHHHhHhcCCCCCCCC
Confidence            777888888888            8888888888888888888888773

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=4.4e-09  Score=69.89  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=39.8

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCY  261 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~  261 (375)
                      .|+++|+++++|.|.+|++.|....+|..|+++|                +++++|.|.
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALH----------------AGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHH----------------TTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHH----------------CCCCCCCCC
Confidence            4778899999999999999999999999999999                788999884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.8e-09  Score=70.16  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.
T Consensus         8 ~~~~~~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            8 TDSKSYNCNECG------------KAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCEEETTTT------------EEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCeECcccC------------cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667778888888            8888888888888888888888773

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=6.6e-09  Score=69.37  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=39.3

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      +.++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|..
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH----------------TGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTT----------------SSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHh----------------CCCCCCCCCC
Confidence            467799999999999999999999999999999                7889999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=8.8e-09  Score=69.51  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=33.9

Q ss_pred             CCCcccccC--CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccc
Q 040794          253 TGMLRLPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKC  303 (375)
Q Consensus       253 ~~~~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~C  303 (375)
                      +++++|.|.  .|+            +.|.....|.+|+++|++++||.|..|
T Consensus         8 ~~~k~~~C~~~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            8 TGEKPFACTWPGCG------------WRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCCEECCSSSCC------------CEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCeECCCCCCC------------CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            777888887  788            888888899999999998899988877

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=2.6e-09  Score=80.36  Aligned_cols=53  Identities=25%  Similarity=0.498  Sum_probs=30.6

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      .+.+++.|..|+            +.| ....|..|+ .|.+++||.|..|++.|. ...|..|+++|
T Consensus        13 c~~r~~~C~~C~------------~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c   65 (75)
T 2d9k_A           13 CPLRLAVCQHCD------------LEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVC   65 (75)
T ss_dssp             CCCCCEECSSSC------------CEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHB
T ss_pred             CCCcccCCcccC------------hHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHc
Confidence            555555555555            555 255566665 556666666666666555 35566666554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.4e-08  Score=68.11  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|.
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            8 HGERGHRCSDCG------------KFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCSSSC------------CCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCcCCCCCC------------CeeCChHHHHHHHHHhCCCCCCCCC
Confidence            777888899998            8888888999999999988988885

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=3.3e-09  Score=79.84  Aligned_cols=64  Identities=19%  Similarity=0.412  Sum_probs=56.0

Q ss_pred             HHHHHHHhhcCCCccccccccccccChhhHHHHHHhc-CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          284 TLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC-GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       284 ~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      .|..|+++|.++|||.|..|++.|. ...|..|+..+ ++++.| .|++.|.+ ..|..|+++ |++++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~-c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEV-CGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHH-BTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHH-ccCCc
Confidence            4667888999999999999999995 99999999433 899999 99999885 899999999 77764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=8.6e-09  Score=69.23  Aligned_cols=43  Identities=23%  Similarity=0.181  Sum_probs=39.4

Q ss_pred             ccccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          204 PSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       204 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      ++++|+++++|.|.+|++.|.+..+|..|+++|                +++++|.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H----------------~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH----------------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHH----------------SSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHh----------------CCCCCCCCCC
Confidence            467899999999999999999999999999999                8889999964

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=68.30  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+
T Consensus         8 ~~~k~~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            8 TGQKPFECTHCG------------KSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CSCCSEEETTTT------------EEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCcCccCCCCC------------CccCChHHHHHHHHHhCCCCCCCCCC
Confidence            777889999998            88999999999999999999988863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=2.7e-08  Score=65.81  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRK  302 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~  302 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++||.|.+
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNECD------------CRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSSC------------CCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCCCEECCCCC------------CeeCChHHHHHHHHhhCCCCCccCCC
Confidence            677889999998            88899999999999999999988863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.7e-08  Score=65.90  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=36.2

Q ss_pred             ccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCccccc
Q 040794          206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPC  260 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C  260 (375)
                      ++|+++++|.|.+|++.|.....|..|+++|                +++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH----------------TGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGC----------------CCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHh----------------CCCCCcCC
Confidence            4689999999999999999999999999999                78888887

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=1.3e-08  Score=67.30  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=37.9

Q ss_pred             ccccCCCceecCcccccccCchHHhhcccccCCCCCCCCCCcCCCCCCCCcccccCC
Q 040794          206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYC  262 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~C~~  262 (375)
                      ++|+++++|.|..|++.|....+|..|+++|                +++++|.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQT----------------HSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHH----------------TCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhh----------------CCCCCccCCC
Confidence            5688999999999999999999999999999                8889999964

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=3.2e-09  Score=82.58  Aligned_cols=64  Identities=13%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhcCCCeee-ecCcc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC-ICGSD  331 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~k~~~C-~Cgk~  331 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||+|..|.    ....|..|+++|...+.. .+...
T Consensus        21 ~~~kpy~C~~C~------------k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   84 (88)
T 1x6f_A           21 LQNSTYQCKHCD------------SKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADGAFADFKQESG   84 (88)
T ss_dssp             CCCSCEECSSSC------------CEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCCSSSCCCCCCC
T ss_pred             CCCCCCcCCCCC------------CEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcccccccccccccCC
Confidence            677888888888            8888888888888888888888886654    455555566666555444 34333


Q ss_pred             c
Q 040794          332 F  332 (375)
Q Consensus       332 F  332 (375)
                      |
T Consensus        85 ~   85 (88)
T 1x6f_A           85 P   85 (88)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.5e-08  Score=64.27  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=27.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC  300 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C  300 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++||.|
T Consensus         6 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            6 SGQRVYECQECG------------KSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCEECSSSC------------CEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCCeECCCCC------------CCcCCHHHHHHHHHHhCCCCCcCC
Confidence            666777777777            777777777777777777777776

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.51  E-value=5.5e-08  Score=60.51  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGI  354 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C  354 (375)
                      |||.| +||+.|..++.|..|+++ |+|+++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL-HELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH-HTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH-hCCCCCCCC
Confidence            58899 899999999999999998 889998863

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.46  E-value=1.1e-07  Score=61.26  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=27.4

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGI  354 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C  354 (375)
                      +++|.| +||+.|..++.|.+|+++ |++++||.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNV-HRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHT-TCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHH-cCCCcccee
Confidence            577888 888888888888888888 788888876

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.41  E-value=1.1e-07  Score=60.27  Aligned_cols=35  Identities=26%  Similarity=0.541  Sum_probs=32.7

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      .|+++|++++||.|+.|++.|.+...|..|+++|.
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            47889999999999999999999999999999993

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.4e-07  Score=59.69  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             cccccCCCceecCcccccccCchHHhhccccc
Q 040794          205 SQILIGPTQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       205 ~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      +++|+++++|.|.+|++.|....+|..|+++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h   32 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTN   32 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHH
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHH
Confidence            35789999999999999999999999999999

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.34  E-value=1e-07  Score=61.17  Aligned_cols=25  Identities=32%  Similarity=0.615  Sum_probs=14.0

Q ss_pred             cCCCccccccccccccChhhHHHHH
Q 040794          293 HGIKPFMCRKCGKAFAVRGDWRTHE  317 (375)
Q Consensus       293 ~gekpy~C~~Cgk~F~~~~~L~~H~  317 (375)
                      .|+|||.|.+|||+|.++++|++|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4555555555555555555555554

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.33  E-value=5.3e-07  Score=66.35  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CCCCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHH-HhhcCCCcccccc
Q 040794          251 QPTGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHY-KRKHGIKPFMCRK  302 (375)
Q Consensus       251 ~~~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~-r~H~gekpy~C~~  302 (375)
                      ..++++||.|..  |+            |.|...++|.+|+ ++|+++|||.|..
T Consensus        21 ~~sGEKPYkC~~~~Cg------------KaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCF------------AAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCC------------CBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcC------------hhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            347778888865  88            8888888888886 5788888888754

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.31  E-value=3.7e-07  Score=58.67  Aligned_cols=36  Identities=11%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcccc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMC  300 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C  300 (375)
                      +++++|.|..|+            +.|...+.|..|+++|++++||.+
T Consensus         2 ~~~k~~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCK------------REFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTC------------CEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCC------------cccCCHHHHHHHHHHcCCCcccee
Confidence            456778888888            888888888888888888888765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=1.3e-07  Score=60.20  Aligned_cols=31  Identities=10%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             HhhcCCCccccccccccccChhhHHHH-HHhc
Q 040794          290 KRKHGIKPFMCRKCGKAFAVRGDWRTH-EKNC  320 (375)
Q Consensus       290 r~H~gekpy~C~~Cgk~F~~~~~L~~H-~k~h  320 (375)
                      ++|+++|||.|..||++|.+++.|..| +++|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            456677777777777777766666666 5555

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=5.4e-07  Score=56.91  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=17.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKP  297 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekp  297 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++|
T Consensus         5 ~~~k~~~C~~C~------------k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            5 SSGRSYSCPVCE------------KSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCEETTTT------------EECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCcCCCCCC------------CccCCHHHHHHHHHHHcCCCC
Confidence            444555555555            555555555555555555543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.27  E-value=4.4e-07  Score=56.59  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=28.6

Q ss_pred             cccCCCceecCcccccccCchHHhhccccc
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      +|+++++|.|.+|++.|....+|..|+++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHc
Confidence            478899999999999999999999999999

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.25  E-value=7.4e-07  Score=55.21  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccc
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM  299 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~  299 (375)
                      ++|.|..|+            +.|...+.|..|+++|+|++||.
T Consensus         1 kp~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECP------------KRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSC------------CCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCC------------chhCCHHHHHHHHHHhCCCCCCC
Confidence            368888888            88888888999998998888875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.25  E-value=3.3e-08  Score=61.01  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=26.9

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYG  353 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~  353 (375)
                      |||.| +||+.|..++.|.+|+++ |++++||+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT-AFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS-SSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH-HccCCCCC
Confidence            57888 899999999999999988 88888874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.24  E-value=4.1e-07  Score=56.60  Aligned_cols=31  Identities=19%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      +|+++++|.|.+|++.|.+..+|..|+++|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            4788999999999999999999999999993

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=4.5e-07  Score=58.88  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=8.1

Q ss_pred             cCcccCChHHHHHHHHH
Q 040794          328 CGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       328 Cgk~F~~~~~L~~H~r~  344 (375)
                      |+|+|.+++.|++|+++
T Consensus        17 C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A           17 CDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCCEESCHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHh
Confidence            44444444444444444

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.22  E-value=1.1e-06  Score=55.44  Aligned_cols=33  Identities=30%  Similarity=0.664  Sum_probs=18.6

Q ss_pred             HHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          288 HYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       288 H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |+++|++++||.|..|++.|.++..|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            345555555555555555555555555555544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.21  E-value=4.8e-07  Score=58.03  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=26.2

Q ss_pred             cCCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCC
Q 040794          320 CGKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       320 h~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                      .+|||.| +|||+|++++.|++|+        ||.|..
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~--------py~C~~   34 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ--------AYYCSH   34 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH--------HHTSTT
T ss_pred             CccCeECCCCCCccCCHhHccCcC--------CeECcC
Confidence            5899999 9999999999999999        777764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=4.7e-07  Score=57.27  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=18.6

Q ss_pred             hhcCCCccccccccccccCh-hhHHHHHHhc
Q 040794          291 RKHGIKPFMCRKCGKAFAVR-GDWRTHEKNC  320 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~-~~L~~H~k~h  320 (375)
                      +|++++||.|..|++.|.++ +.|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            45666666666666666666 6666666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.18  E-value=5.5e-07  Score=61.08  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=14.6

Q ss_pred             CCCeee-ecCcccCChHHHHHHHH-HhCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIK-AFGNGH  349 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r-~~H~ge  349 (375)
                      +|+|.| +|+|.|..+..|++|++ + |+++
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~-H~~e   34 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHS-HLAE   34 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHS-SCC-
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhh-cCCC
Confidence            445555 55555555555555555 4 4443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.17  E-value=7.8e-07  Score=56.58  Aligned_cols=31  Identities=23%  Similarity=0.499  Sum_probs=20.2

Q ss_pred             CCCeee-e--cCcccCChHHHHHHHHHhCCCCCCC
Q 040794          321 GKLWYC-I--CGSDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       321 ~k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      +++|.| .  |++.|.+++.|++|+++ |++++||
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHH-HHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            456666 3  66666666677777766 5666665

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=6.7e-07  Score=56.81  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             cccccCCCceecCcccccccCchHHhhc-cccc
Q 040794          205 SQILIGPTQFSCPVCCKTFNRYNNMQMH-MWGH  236 (375)
Q Consensus       205 ~~~h~g~kp~~C~~C~k~F~~~~~L~~H-~~~H  236 (375)
                      +++|++++||+|..|++.|.....|..| +++|
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            3578999999999999999999999999 8888

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.14  E-value=1.4e-06  Score=51.68  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=22.5

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      +++|.| .||+.|.....|.+|+++ |++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~-h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLET-HDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHT-TCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH-hccCC
Confidence            467888 888888888888888887 66653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.13  E-value=1.7e-06  Score=53.66  Aligned_cols=20  Identities=25%  Similarity=0.386  Sum_probs=10.8

Q ss_pred             cccCCHHHHHHHHHhhcCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gek  296 (375)
                      +.|...+.|..|+++|++++
T Consensus        15 k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A           15 KKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CEESSHHHHHHHHHHTSCTT
T ss_pred             chhCCHHHHHHHHHHHcCCC
Confidence            55555555555555555544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=1.2e-06  Score=54.91  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=28.9

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      .|+++++|.|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            5788999999999999999999999999993

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.10  E-value=2.1e-06  Score=53.39  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=18.4

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCc
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKP  297 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekp  297 (375)
                      +++++|.|..|+            +.|.....|.+|+++|++++|
T Consensus         3 ~~~k~~~C~~C~------------k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            3 SGKRPFVCRICL------------SAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             SCCSCEECSSSC------------CEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCcCeeCCCCC------------cccCCHHHHHHHHHHcCCCCC
Confidence            344555555555            555555555555555555543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=1.5e-06  Score=54.38  Aligned_cols=26  Identities=31%  Similarity=0.717  Sum_probs=10.7

Q ss_pred             cCCCccccccccccccChhhHHHHHH
Q 040794          293 HGIKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       293 ~gekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ++++||.|.+|++.|.++..|..|++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHH
Confidence            33444444444444444444444433

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=1.5e-06  Score=54.49  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=29.0

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      .|+++++|+|.+|++.|....+|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            5789999999999999999999999999993

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=1.4e-06  Score=54.46  Aligned_cols=31  Identities=19%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      +|+++++|.|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5788999999999999999999999999993

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.06  E-value=2.2e-06  Score=62.71  Aligned_cols=36  Identities=17%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFE  358 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~~~  358 (375)
                      +|||.| +|+|.|.+++.|++|+++ |++++ ..|..++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~~-~~~~~~~   47 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQ-HGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH-HTTTS-CCCCSCC
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhh-hCCCc-ccccccc
Confidence            566777 677777777777777777 45543 3455544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.05  E-value=2.1e-06  Score=50.63  Aligned_cols=27  Identities=22%  Similarity=0.647  Sum_probs=20.4

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      ++|.| .|++.|...+.|.+|+++ |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-hcCC
Confidence            46778 788888888888888887 5554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.04  E-value=1.6e-06  Score=51.33  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=20.4

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |||.| .||+.|...+.|..|+++ |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL-HENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG-GGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH-hcCC
Confidence            57778 788888888888888877 5554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.03  E-value=1.8e-06  Score=58.50  Aligned_cols=31  Identities=16%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             cccCCCceecCcccccccCchHHhhccc-ccC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMW-GHG  237 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~-~H~  237 (375)
                      +|+++++|.|.+|++.|....+|..|++ +|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            5889999999999999999999999999 994

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=2.8e-06  Score=53.25  Aligned_cols=24  Identities=42%  Similarity=0.919  Sum_probs=12.6

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHH
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +++|.| .|++.|..+..|.+|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            344555 555555555555555555

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.00  E-value=3.9e-06  Score=48.90  Aligned_cols=24  Identities=17%  Similarity=0.546  Sum_probs=16.1

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHH
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +++|.| .||+.|..++.|.+|+++
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH
Confidence            356666 677777777777777666

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=7.2e-06  Score=51.12  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +++++|.|..|+            +.|.....|..|+++|++++
T Consensus         5 ~~~~~~~C~~C~------------k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            5 SSGKTHLCDMCG------------KKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCSSCBCTTTC------------CBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCeecCcCC------------CCcCchHHHHHHHHHhcCCC
Confidence            778999999999            99999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.99  E-value=3.2e-06  Score=49.59  Aligned_cols=24  Identities=25%  Similarity=0.735  Sum_probs=17.4

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHH
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +++|.| .|++.|..++.|.+|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh
Confidence            366777 777777777777777776

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=2.2e-06  Score=50.45  Aligned_cols=27  Identities=30%  Similarity=0.650  Sum_probs=19.9

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      ++|.| .|++.|.....|..|+++ |+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI-HSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH-HHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH-hcCC
Confidence            46777 788888888888888777 5554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=4.6e-06  Score=52.17  Aligned_cols=19  Identities=11%  Similarity=0.016  Sum_probs=10.3

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|.....|..|+++|+++
T Consensus        17 k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A           17 RKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CEESSHHHHHHHHTTTSTT
T ss_pred             CccCCHHHHHHHHHHhcCC
Confidence            5555555555555555544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.97  E-value=4.4e-06  Score=52.95  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             CCCcccccC--CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCcc
Q 040794          253 TGMLRLPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPF  298 (375)
Q Consensus       253 ~~~~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy  298 (375)
                      +++++|.|.  .|+            +.|...+.|.+|+++|++++||
T Consensus         2 ~~~k~~~C~~~~C~------------k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCG------------QRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTC------------CEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCC------------cccCCHHHHHHHHHHhCCCCCC
Confidence            456778888  488            8888888888888888888776

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.22  E-value=9.4e-07  Score=52.46  Aligned_cols=27  Identities=33%  Similarity=0.732  Sum_probs=20.2

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      +||.| .||+.|...+.|.+|+++ |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ-HTGE   28 (29)
Confidence            46777 788888888888888877 5554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=3.3e-06  Score=49.25  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             CCccccccccccccChhhHHHHHHhc
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      ++||.|..||++|.+++.|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            47889999999999999999998876

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.97  E-value=3.1e-06  Score=50.13  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=20.6

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      ++|.| +|++.|...+.|.+|+++| .+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h-~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTK-HSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH-TSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHH-ccCC
Confidence            46788 7888888888888888874 4443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.96  E-value=3.2e-06  Score=49.52  Aligned_cols=23  Identities=17%  Similarity=0.569  Sum_probs=15.2

Q ss_pred             CCeee-ecCcccCChHHHHHHHHH
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +||.| .||+.|..++.|.+|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            56666 666666666666666665

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.96  E-value=2.3e-06  Score=50.11  Aligned_cols=26  Identities=15%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CCccccccccccccChhhHHHHHHhc
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      ++||.|..||++|.+++.|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            47889999999999999999988765

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=7.1e-06  Score=53.10  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=10.8

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      |.|..++.|.+|+++|+|+
T Consensus        19 k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A           19 YSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CEESCHHHHHHHHHHHSCC
T ss_pred             CccCCHHHHHHHHHhcCCC
Confidence            5555555555555555553

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.94  E-value=3e-06  Score=56.96  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             CCCccccccCCCceecC--cccccccCchHHhhcccccC
Q 040794          201 IPTPSQILIGPTQFSCP--VCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       201 l~~h~~~h~g~kp~~C~--~C~k~F~~~~~L~~H~~~H~  237 (375)
                      +..|...|++++||.|.  .|++.|.+..+|..|+++|.
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            44556679999999996  79999999999999999993

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=7.3e-06  Score=51.08  Aligned_cols=29  Identities=24%  Similarity=0.535  Sum_probs=13.4

Q ss_pred             hcCCCccccccccccccChhhHHHHHHhc
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |++++||.|..|++.|..+..|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            34444444444444444444444444443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.18  E-value=1.2e-06  Score=52.27  Aligned_cols=27  Identities=26%  Similarity=0.657  Sum_probs=19.7

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      ++|.| .||+.|...+.|.+|+++ |.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~-h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI-HTGE   29 (30)
Confidence            56777 777777777777777777 5554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=7.2e-06  Score=51.26  Aligned_cols=29  Identities=24%  Similarity=0.450  Sum_probs=15.2

Q ss_pred             hcCCCccccccccccccChhhHHHHHHhc
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |++++||.|..|++.|.++..|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            44555555555555555555555555544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=2.5e-06  Score=50.14  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=18.1

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |+|.| .|++.|...+.|..|+++ |.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI-HIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH-HHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH-hccC
Confidence            46677 677777777777777776 4443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.93  E-value=8.6e-06  Score=59.53  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc-CCCeee-ecCc
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC-GKLWYC-ICGS  330 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h-~k~~~C-~Cgk  330 (375)
                      .|.++|||.|.+|+|+|.++..|+.|+++| +....| .++.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~   48 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDL   48 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccccccccC
Confidence            367899999999999999999999999998 445555 5554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.93  E-value=1.3e-06  Score=53.55  Aligned_cols=25  Identities=32%  Similarity=0.677  Sum_probs=24.0

Q ss_pred             CceecCcccccccCchHHhhccccc
Q 040794          212 TQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       212 kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      +||.|.+|++.|....+|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H   25 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTA   25 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHH
Confidence            4899999999999999999999999

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.90  E-value=3.5e-06  Score=50.14  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=20.5

Q ss_pred             CCeee-ecCcccCChHHHHHH-HHHhCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDH-IKAFGNGHA  350 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H-~r~~H~ge~  350 (375)
                      ++|.| .||+.|..++.|.+| +++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI-HSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT-SCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH-ccCCC
Confidence            46778 788888888888888 455 66653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=7.4e-06  Score=51.55  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCH-HHHHHHHHhhcCCC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDF-RTLQTHYKRKHGIK  296 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~-~~L~~H~r~H~gek  296 (375)
                      +++++|.|..|+            +.|... ..|..|+++|+++|
T Consensus         5 ~~~k~~~C~~C~------------k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            5 SSGRAMKCPYCD------------FYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCEECSSSS------------CEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCeECCCCC------------hhhccCHHHHHHHHHhcCCCC
Confidence            778999999999            999999 99999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1.1e-05  Score=50.35  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=17.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~ge  295 (375)
                      .++++|.|..|+            +.|.....|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~------------k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            5 SSGKIFTCEYCN------------KVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             SCCCCEECTTTC------------CEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCEECCCCC------------ceeCCHHHHHHHHHHhCCC
Confidence            344555555555            5555555555555555554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.86  E-value=5.9e-06  Score=52.28  Aligned_cols=28  Identities=25%  Similarity=0.525  Sum_probs=12.4

Q ss_pred             hcCCCccccc--cccccccChhhHHHHHHh
Q 040794          292 KHGIKPFMCR--KCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       292 H~gekpy~C~--~Cgk~F~~~~~L~~H~k~  319 (375)
                      |++++||.|.  .||++|.+++.|..|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            3444444444  244444444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.85  E-value=5.9e-06  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.630  Sum_probs=18.1

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      ||.| .|++.|..++.|.+|+++ |++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~-h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV-HKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG-TCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH-cCC
Confidence            4677 788888888888888877 554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.84  E-value=7.6e-06  Score=49.31  Aligned_cols=28  Identities=25%  Similarity=0.694  Sum_probs=19.0

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      +||.|   .||+.|..++.|.+|+++ |+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH-hcCCC
Confidence            46666   477777777777777777 56553

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.82  E-value=6e-06  Score=48.36  Aligned_cols=26  Identities=31%  Similarity=0.811  Sum_probs=22.2

Q ss_pred             CCccccccccccccChhhHHHHHHhc
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      ++||.|..||++|.+...|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhc
Confidence            47889999999999999999988776

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=48.90  Aligned_cols=23  Identities=35%  Similarity=0.800  Sum_probs=13.0

Q ss_pred             CCeee-ecCcccCChHHHHHHHHH
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |||.| .||+.|..++.|.+|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            34555 555555555555555555

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.75  E-value=1.4e-05  Score=48.41  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=16.7

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      ++|.|   .||+.|..++.|.+|+++ |+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS-HQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG-GTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH-ccCC
Confidence            55666   266666666666666666 5554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.92  E-value=4.2e-06  Score=48.28  Aligned_cols=25  Identities=32%  Similarity=0.861  Sum_probs=23.6

Q ss_pred             CccccccccccccChhhHHHHHHhc
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |||.|..||++|.+.+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            6899999999999999999999876

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.72  E-value=2.7e-05  Score=45.59  Aligned_cols=28  Identities=21%  Similarity=0.542  Sum_probs=18.2

Q ss_pred             ccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          257 RLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       257 ~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +|.|..|+            +.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~------------~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            2 SFVCEVCT------------RAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCTTTC------------CBCSSHHHHHHHHHHHSCCC
T ss_pred             CeECCCCC------------cccCCHHHHHHHHHHhcCCC
Confidence            46666666            66666666666666666553

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.71  E-value=2.2e-05  Score=46.23  Aligned_cols=19  Identities=11%  Similarity=0.128  Sum_probs=11.2

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|.....|..|+++|+++
T Consensus        11 ~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A           11 RSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CEESCHHHHHHHHHTTCCC
T ss_pred             cccCCHHHHHHHHHHhccC
Confidence            5566666666666655554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.71  E-value=8.7e-06  Score=54.61  Aligned_cols=19  Identities=16%  Similarity=0.181  Sum_probs=10.7

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|...+.|.+|+++|+|+
T Consensus        28 k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           28 KTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CEECSSSSHHHHHHHHTTT
T ss_pred             CccCCHHHHHHHHHHccCC
Confidence            5555555555555555554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.70  E-value=2.6e-05  Score=49.19  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=29.5

Q ss_pred             CCCcccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          253 TGMLRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       253 ~~~~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +++++|.|..  |+            +.|...+.|.+|+++|+|+|
T Consensus         4 ~~~k~~~C~~~~C~------------k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            4 GKKKQHICHIQGCG------------KVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSCCCEECCSTTCC------------CEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCC------------CccCCHHHHHHHHHhcCCCC
Confidence            7789999984  99            99999999999999999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.67  E-value=2e-05  Score=46.33  Aligned_cols=19  Identities=16%  Similarity=0.041  Sum_probs=11.3

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|...+.|..|+++|+++
T Consensus        10 k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A           10 KRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEESCSHHHHHHHTGGGSC
T ss_pred             chhCCHHHHHHHHHHhcCC
Confidence            6666666666666666554

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.64  E-value=2.8e-05  Score=45.46  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=12.4

Q ss_pred             cccCCHHHHHHHHHhhcCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gek  296 (375)
                      +.|.....|..|+++|+++|
T Consensus        10 k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A           10 KQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CEESCHHHHHHHHHHHHTCC
T ss_pred             CccCChhHHHHHHHHhcCCC
Confidence            66666666666666666543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.63  E-value=3.3e-05  Score=45.43  Aligned_cols=20  Identities=35%  Similarity=0.343  Sum_probs=12.6

Q ss_pred             cccCCHHHHHHHHHhhcCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gek  296 (375)
                      +.|...+.|..|+++|++++
T Consensus        10 k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A           10 FRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCHHHHHHHHHHHccCC
Confidence            66666666666666666554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.60  E-value=4.3e-05  Score=45.83  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=14.0

Q ss_pred             cccCCHHHHHHHHHhhcCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gek  296 (375)
                      +.|...+.|..|+++|+|+|
T Consensus        12 k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A           12 KRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CBCSSHHHHHHHHTTTSCCC
T ss_pred             cccCCHhHHHHHHHHhcCCC
Confidence            77777777777777776654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=3.4e-05  Score=44.98  Aligned_cols=19  Identities=21%  Similarity=0.246  Sum_probs=10.8

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|.....|..|+++|+++
T Consensus        10 ~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A           10 KKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCTTTHHHHHHHHHHSC
T ss_pred             cccCCHHHHHHHHHHhccC
Confidence            5555555555555555554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.57  E-value=5e-05  Score=45.81  Aligned_cols=20  Identities=20%  Similarity=0.140  Sum_probs=12.7

Q ss_pred             cccCCHHHHHHHHHhhcCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gek  296 (375)
                      +.|...+.|..|+++|++++
T Consensus        13 k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A           13 KAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCBSSSHHHHHHHGGGTCCC
T ss_pred             CccCCHHHHHHHHHHccCCC
Confidence            66666666666666666553

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.64  E-value=1.4e-05  Score=47.10  Aligned_cols=19  Identities=21%  Similarity=0.378  Sum_probs=9.6

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|.....|..|+++|+++
T Consensus        10 k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A           10 KAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5555555555555555443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.59  E-value=1.7e-05  Score=46.89  Aligned_cols=25  Identities=32%  Similarity=0.739  Sum_probs=12.0

Q ss_pred             CccccccccccccChhhHHHHHHhc
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +||.|..||++|.+...|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            3444444555554444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.42  E-value=8.1e-05  Score=42.80  Aligned_cols=18  Identities=11%  Similarity=0.257  Sum_probs=10.8

Q ss_pred             cccCCHHHHHHHHHhhcC
Q 040794          277 KPLKDFRTLQTHYKRKHG  294 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~g  294 (375)
                      +.|.....|.+|+++|++
T Consensus         9 k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            9 RSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSHHHHHHHGGGTCC
T ss_pred             CcCCCHHHHHHHHHHcCC
Confidence            666666666666666554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.39  E-value=5.8e-05  Score=44.11  Aligned_cols=24  Identities=29%  Similarity=0.742  Sum_probs=13.6

Q ss_pred             ccccc--cccccccChhhHHHHHHhc
Q 040794          297 PFMCR--KCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       297 py~C~--~Cgk~F~~~~~L~~H~k~h  320 (375)
                      ||.|.  .||++|...+.|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            45555  5555555555555555544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.37  E-value=7.5e-05  Score=44.07  Aligned_cols=19  Identities=21%  Similarity=0.198  Sum_probs=10.7

Q ss_pred             cccCCHHHHHHH-HHhhcCC
Q 040794          277 KPLKDFRTLQTH-YKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H-~r~H~ge  295 (375)
                      +.|...+.|..| +++|+++
T Consensus        10 k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A           10 RAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CBCSSSHHHHHHHTTTSCCC
T ss_pred             cccCChHHHHHHHHHHccCC
Confidence            555555555555 4555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00063  Score=49.08  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             ccccccChhhHHHHHH-hc--C------CCeee---ecCcccCChHHHHHHHHHhC
Q 040794          303 CGKAFAVRGDWRTHEK-NC--G------KLWYC---ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       303 Cgk~F~~~~~L~~H~k-~h--~------k~~~C---~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      |++.|.+...|..|+. .|  .      +.|.|   .|++.+.....|..|+|..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            5555555555555542 33  1      26777   58888777788888887754

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.98  E-value=0.00037  Score=40.46  Aligned_cols=27  Identities=30%  Similarity=0.578  Sum_probs=24.6

Q ss_pred             cccccC--CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC
Q 040794          256 LRLPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG  294 (375)
Q Consensus       256 ~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g  294 (375)
                      ++|.|.  .|+            +.|...+.|..|+++|+|
T Consensus         1 k~~~C~~~~C~------------k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCG------------RSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTC------------EEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCc------------CccCCHHHHHHHHHHhCC
Confidence            368899  999            999999999999999975

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0051  Score=44.18  Aligned_cols=43  Identities=19%  Similarity=0.265  Sum_probs=39.0

Q ss_pred             cccCCHHHHHHHH-HhhcCCC------ccccc--cccccccChhhHHHHHHh
Q 040794          277 KPLKDFRTLQTHY-KRKHGIK------PFMCR--KCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       277 k~f~~~~~L~~H~-r~H~gek------py~C~--~Cgk~F~~~~~L~~H~k~  319 (375)
                      +.|.....|..|+ +.|.+.+      +|.|.  .|++.+.....|+.|+++
T Consensus        11 ~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           11 ESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            9999999999998 5898776      89996  899999999999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.07  E-value=0.0011  Score=54.26  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=23.9

Q ss_pred             HhhcCCCccccccccccccChhhHHHHHH
Q 040794          290 KRKHGIKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       290 r~H~gekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ..|+|++||.|..|+|.|.+.+.|..|++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            34788888888888888888888888865

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.32  E-value=0.012  Score=48.32  Aligned_cols=73  Identities=18%  Similarity=0.332  Sum_probs=48.8

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHH--HhhcCC-Cccccccc------cccccChhhHHHHHH--hcCCC
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHY--KRKHGI-KPFMCRKC------GKAFAVRGDWRTHEK--NCGKL  323 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~--r~H~ge-kpy~C~~C------gk~F~~~~~L~~H~k--~h~k~  323 (375)
                      .+++.|..|.            ..|...+.+..|+  +.|... +.|.+..+      ++.|....    +..  ...+.
T Consensus        30 ~~~~~C~~C~------------v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   93 (127)
T 1zu1_A           30 FSDTQCKVCS------------AVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRS   93 (127)
T ss_dssp             BCSSEETTTT------------EECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTT
T ss_pred             CCCCcCcCCC------------CEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCC
Confidence            4778899998            8888888888888  556432 34444211      22332211    111  12578


Q ss_pred             eee-ecCcccCChHHHHHHHH
Q 040794          324 WYC-ICGSDFKHKRSLKDHIK  343 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r  343 (375)
                      |.| .|++.|.....|..|++
T Consensus        94 ~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           94 KCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEETTTTEECSSHHHHHHHHT
T ss_pred             eEcCCCCCEeCCHHHHHHHHC
Confidence            999 99999999999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.24  E-value=0.0045  Score=50.54  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             ccccCCCceecCcccccccCchHHhhccccc
Q 040794          206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      ..|+|+++|.|..|++.|.+..+|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3488999999999999999999999999864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.75  E-value=0.0024  Score=52.59  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             CceecCcccccccCchHHhhcc--cccCCCCCCCCCCcCCCCCCCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHH
Q 040794          212 TQFSCPVCCKTFNRYNNMQMHM--WGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHY  289 (375)
Q Consensus       212 kp~~C~~C~k~F~~~~~L~~H~--~~H~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~  289 (375)
                      +++.|.+|+..|.....+..|.  +.|..               ..+.+.+. ++....     .-.+.|....    +.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~---------------~v~~~~~~-~~~~~~-----~~~~~~~~~~----~~   85 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHAN---------------KVRRYMAI-NQGEDS-----VPAKKFKAAP----AE   85 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHH---------------HHHHHHHH-TTCCCC-----CSCCCCSCCS----SC
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHH---------------HHHHHhcc-cCcccC-----CCCCccCCCc----cc
Confidence            4689999999999999999998  45521               11222221 110000     0002222110    12


Q ss_pred             HhhcCCCccccccccccccChhhHHHHHH
Q 040794          290 KRKHGIKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       290 r~H~gekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ..+.+.+.|-|..|.+.|.....|..|..
T Consensus        86 ~~~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           86 ISDGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CSSCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cccCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            24567788999999999999999999975

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.72  E-value=0.03  Score=47.93  Aligned_cols=67  Identities=16%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhhcCCCccccccccccccChhhHHHHHH-hc-CCCeee-ecCcccCChHHHHHHHHHhCCCCCCC
Q 040794          282 FRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEK-NC-GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAY  352 (375)
Q Consensus       282 ~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k-~h-~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y  352 (375)
                      ...|..|.+ .=.-++..|+.|+..+ .+..|..|+. .+ .+.-.| .|+..|..+ .|..|..+ ++|+.++
T Consensus        96 ~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~-~l~~H~~~-~~~~~~~  165 (170)
T 3hcs_A           96 LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQN-CPLALEH  165 (170)
T ss_dssp             GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGG-GHHHHHTT-CCC----
T ss_pred             HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHH-HHHhHHHh-CcChhhh
Confidence            456777863 3344678899999988 5778999996 55 577889 899988665 78999988 8887765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.87  E-value=0.028  Score=37.42  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=14.1

Q ss_pred             CccccccccccccChhhHHHHHH
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      .+|.|+.|++.|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            44566666666666666666665

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.70  E-value=0.058  Score=35.92  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             CCeee-ecCcccCChHHHHHHHHH
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      .+|.| .|++.|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            57899 999999999999999995

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=87.68  E-value=0.15  Score=37.82  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=11.1

Q ss_pred             HHHHHHHhhcCCCcccccccccccc
Q 040794          284 TLQTHYKRKHGIKPFMCRKCGKAFA  308 (375)
Q Consensus       284 ~L~~H~r~H~gekpy~C~~Cgk~F~  308 (375)
                      .|..|...-.+-..|.|..|++.|.
T Consensus        24 kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           24 QVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             HHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             cchhHHhhCCCCCcEEecccCCeeC
Confidence            4444443333333445555555554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.34  E-value=1.3  Score=27.47  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      .|.| +|.+.|.....|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            3777 7888888888888887776654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=80.27  E-value=0.59  Score=35.39  Aligned_cols=27  Identities=30%  Similarity=0.631  Sum_probs=18.7

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAA  351 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~  351 (375)
                      .....| +|||.|+.   |++|++++ .|..|
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~-hgltp   46 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTH-HSMTP   46 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHT-TCSCH
T ss_pred             CCceEecccchhhHH---HHHHHHHc-cCCCH
Confidence            345678 88888884   77998883 35443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	375
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.002
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 296 KPFMCRKCGKAFAVRGDWRTHEKNCGKLWYC---ICGSDFKHKRSLKDHIK 343
           K + C +CGK+F  +     H      L      +CG  FK K  L  H+K
Sbjct: 2   KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 294 GIKPFMCRKCGKAFAVRGDWRTHEK 318
           G KP+ C +CGKAF+       H++
Sbjct: 4   GEKPYGCVECGKAFSRSSILVQHQR 28

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 291 RKH-GIKPFMCRKCGKAFAVRGDWRTHEK 318
           R H G KP+ C  C K F  +     H K
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFK 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 296 KPFMCRKCGKAFAVRGDWRTHEK 318
           KP++C+ CGK F+       H K
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIK 26

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 291 RKH-GIKPFMCRKCGKAFAVRGDWRTHEK 318
           R H G KP+ C  C   F   G  + H  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHIL 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.54
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.51
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.08
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.06
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.99
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.98
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.91
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.89
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.88
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.87
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.86
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.85
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.84
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.8
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.74
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.72
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.69
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.64
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.63
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.59
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.58
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.56
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.54
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.52
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.51
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.44
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.2
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.19
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.19
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.15
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.11
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.09
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.97
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.97
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.96
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.9
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.8
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.76
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.72
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.62
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.36
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.28
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.18
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.07
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.04
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.0
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.92
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.75
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.73
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.66
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.64
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.62
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.61
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.58
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.47
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.46
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.45
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.34
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.23
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.09
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.9
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.56
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.46
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.44
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.4
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.39
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.29
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.83
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.74
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.65
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.61
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.38
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.25
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.09
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.94
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.74
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.44
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.41
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.12
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.05
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.03
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.5
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.5
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.48
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.12
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.81
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.11
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.09
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.41
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.0
d1v65a_	64	hypotheical protein 2610044O15Rik {Mouse (Mus musc	89.87
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.85
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	86.82
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.11
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	83.1
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.52

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-15  Score=105.25  Aligned_cols=53  Identities=26%  Similarity=0.539  Sum_probs=42.1

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +++|.| .||            +.|.....|..|+++|+|+|||.|.+||++|.+.+.|..|+++|
T Consensus         1 EK~y~C-~Cg------------k~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCG------------KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTS------------CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCC------------CeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            367888 488            88888888888888888888888888888888888888887765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-15  Score=104.01  Aligned_cols=50  Identities=32%  Similarity=0.656  Sum_probs=47.4

Q ss_pred             CCccccccccccccChhhHHHHHHhc--CCCeee-ecCcccCChHHHHHHHHHh
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC--GKLWYC-ICGSDFKHKRSLKDHIKAF  345 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h--~k~~~C-~Cgk~F~~~~~L~~H~r~~  345 (375)
                      ||||.| .||++|.++..|..|+++|  +|||.| +||++|.+.+.|.+|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            699999 5999999999999999987  899999 9999999999999999983

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=84.19  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCCCCCCCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYGIDG  356 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~C~~  356 (375)
                      +|||+| +|||+|+++++|++|++..|+|+|||+|+.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            699999 999999999999999875599999999984

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=8.8e-12  Score=79.28  Aligned_cols=34  Identities=29%  Similarity=0.610  Sum_probs=31.0

Q ss_pred             HHHhhcCCCccccccccccccChhhHHHHHHhcC
Q 040794          288 HYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       288 H~r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h~  321 (375)
                      |.|+|+|+|||+|.+||++|.++++|+.|+++|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6789999999999999999999999999998873

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.6e-11  Score=76.51  Aligned_cols=31  Identities=29%  Similarity=0.595  Sum_probs=26.5

Q ss_pred             HhhcCCCccccccccccccChhhHHHHHHhc
Q 040794          290 KRKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       290 r~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |+|+|+|||+|.+||++|.++++|+.|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            5788888888888888888888888888877

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.3e-11  Score=72.64  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             hhcCCCccccccccccccChhhHHHHHHhc
Q 040794          291 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       291 ~H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +|+|+|||+|.+|||+|.++++|+.|+++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            466777777776666666666666666655

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.1e-11  Score=75.17  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhcccccC
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      .|+++|+++|||+|++|||+|.+.++|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            68999999999999999999999999999999993

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-10  Score=72.88  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=31.1

Q ss_pred             CcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHH-hhcCCCcccccc
Q 040794          255 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYK-RKHGIKPFMCRK  302 (375)
Q Consensus       255 ~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r-~H~gekpy~C~~  302 (375)
                      ++||.|..||            |.|.+.++|.+|++ +|+|+|||+|.+
T Consensus         3 ~Kpy~C~~Cg------------k~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCG------------KGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSC------------CEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCC------------CCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999            99999999999976 799999999863

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.5e-10  Score=73.40  Aligned_cols=34  Identities=26%  Similarity=0.591  Sum_probs=32.6

Q ss_pred             CccccccCCCceecCcccccccCchHHhhccccc
Q 040794          203 TPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       203 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      .|.|+|+|+|||+|.+|+++|.++++|..|+++|
T Consensus         1 gh~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            3789999999999999999999999999999999

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.91  E-value=2.7e-10  Score=68.01  Aligned_cols=28  Identities=21%  Similarity=0.619  Sum_probs=25.2

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      |||.| +|||+|++++.|++|+++ |+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            68999 899999999999999999 89886

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=2.2e-10  Score=71.44  Aligned_cols=29  Identities=34%  Similarity=0.702  Sum_probs=18.5

Q ss_pred             hcCCCccccccccccccChhhHHHHHHhc
Q 040794          292 KHGIKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       292 H~gekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |+|+|||+|.+|+|+|+++++|++|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            46666666666666666666666666655

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.9e-10  Score=69.88  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=29.7

Q ss_pred             cccCCCceecCcccccccCchHHhhcccccC
Q 040794          207 ILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       207 ~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      +|+|+|||+|.+|||+|.+.++|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            6999999999999999999999999999993

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.6e-10  Score=71.18  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCC
Q 040794          253 TGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       253 ~~~~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~ge  295 (375)
                      ++++||.|.+||            |.|.+.++|.+|+++|+||
T Consensus         8 t~ekpy~C~~Cg------------K~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           8 RERRRYKCDECG------------KSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCSSBCSSSC------------CBCSCHHHHHHHHTTTCCS
T ss_pred             CCCCCEecCCCC------------ceeeCHHHHHHhCccCCCC
Confidence            666667777776            6666667777777766664

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.1e-10  Score=71.40  Aligned_cols=29  Identities=28%  Similarity=0.600  Sum_probs=22.2

Q ss_pred             HhhcCCCccccccccccccChhhHHHHHH
Q 040794          290 KRKHGIKPFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       290 r~H~gekpy~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      |+|+|+|||+|..||++|+++++|+.|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            46888888888878777777777777764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.4e-10  Score=70.73  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             ccccCCCceecCcccccccCchHHhhcccccC
Q 040794          206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      |+|+|+|||+|.+|+++|.+.++|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            58999999999999999999999999999994

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=3.8e-10  Score=66.64  Aligned_cols=27  Identities=33%  Similarity=0.712  Sum_probs=20.3

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      ||||+| +|+|+|++++.|++|+|+ |+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~-HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT-HTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH-HHC
T ss_pred             CcCccCCCCcCEecccccccccCCC-ccC
Confidence            577777 777888888888888877 554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.7e-10  Score=66.87  Aligned_cols=28  Identities=29%  Similarity=0.538  Sum_probs=23.8

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      |||.| +|||+|.+++.|.+|+|+ |+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            68888 888888888888888888 78875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.3e-10  Score=69.27  Aligned_cols=31  Identities=32%  Similarity=0.713  Sum_probs=29.3

Q ss_pred             eee-e--cCcccCChHHHHHHHHHhCCCCCCCCCC
Q 040794          324 WYC-I--CGSDFKHKRSLKDHIKAFGNGHAAYGID  355 (375)
Q Consensus       324 ~~C-~--Cgk~F~~~~~L~~H~r~~H~ge~~y~C~  355 (375)
                      |.| .  |||+|++++.|++|+++ |+|+|||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCCEeCC
Confidence            788 4  99999999999999999 8999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2e-09  Score=66.93  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=28.8

Q ss_pred             ccCCCceecCcccccccCchHHhhcccccC
Q 040794          208 LIGPTQFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       208 h~g~kp~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      |+|+|||+|.+|+|.|.+..+|..|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            789999999999999999999999999994

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.8e-09  Score=67.77  Aligned_cols=31  Identities=23%  Similarity=0.593  Sum_probs=28.8

Q ss_pred             ccccCCCceecCcccccccCchHHhhccccc
Q 040794          206 QILIGPTQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       206 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      |+|+|+|||+|++|++.|.+..+|..|++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            5899999999999999999999999998654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.6e-09  Score=61.50  Aligned_cols=23  Identities=30%  Similarity=0.710  Sum_probs=14.2

Q ss_pred             CCeee-ecCcccCChHHHHHHHHH
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |||+| +|||+|.++++|.+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            45666 566666666666666665

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.8e-09  Score=59.70  Aligned_cols=25  Identities=36%  Similarity=0.797  Sum_probs=24.1

Q ss_pred             CccccccccccccChhhHHHHHHhc
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |||+|.+|||+|.++++|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            7999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.63  E-value=9.7e-09  Score=61.09  Aligned_cols=29  Identities=21%  Similarity=0.498  Sum_probs=22.9

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +||.|.+|+            |.|++.+.|.+|+++|+|+|
T Consensus         1 kp~~C~~C~------------k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCT------------RAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTC------------CCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCC------------CCCCCchHcccccCcccCCC
Confidence            467888888            88888888888888888875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-08  Score=60.96  Aligned_cols=27  Identities=26%  Similarity=0.648  Sum_probs=24.1

Q ss_pred             CCeee-e--cCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-I--CGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |||.| .  |||+|++++.|++|+|+ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcCC
Confidence            68999 6  99999999999999999 8886

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.4e-08  Score=60.27  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=21.8

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +||.|.+|+            |.|.+.+.|.+|+|+|+|+|
T Consensus         1 Kpy~C~~C~------------k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECP------------KRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTT------------CCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCC------------CeecchHHhhhhcCccCCcC
Confidence            467777777            77777777777777777765

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.4e-08  Score=63.54  Aligned_cols=32  Identities=22%  Similarity=0.567  Sum_probs=29.3

Q ss_pred             cccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccccc
Q 040794          258 LPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCR  301 (375)
Q Consensus       258 ~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~C~  301 (375)
                      |.|..  |+            |.|+....|.+|+++|+|+|||.|.
T Consensus         2 f~C~~~~C~------------k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACG------------KSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTC------------CEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCC------------CeeCChhHhccccCeeCCCCCEeCC
Confidence            67876  88            9999999999999999999999996

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=9.7e-09  Score=68.31  Aligned_cols=38  Identities=29%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CcCCCCccccccCCCceecCc--ccccccCchHHhhccccc
Q 040794          198 QYWIPTPSQILIGPTQFSCPV--CCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       198 ~~~l~~h~~~h~g~kp~~C~~--C~k~F~~~~~L~~H~~~H  236 (375)
                      +..|..|++ |+|++||+|..  |+|+|.+.++|..|+++|
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            345667775 99999999987  999999999999999999

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-08  Score=60.78  Aligned_cols=27  Identities=30%  Similarity=0.746  Sum_probs=23.6

Q ss_pred             CCeee-e--cCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC-I--CGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C-~--Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |||.| .  |||+|++++.|++|+|+ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH-HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc-cCCC
Confidence            68999 5  99999999999999998 7775

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2e-08  Score=60.64  Aligned_cols=28  Identities=25%  Similarity=0.694  Sum_probs=25.0

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      |||.|   .|||+|++++.|++|+|+ |+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            68999   499999999999999999 89886

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=2.5e-08  Score=58.62  Aligned_cols=25  Identities=36%  Similarity=0.727  Sum_probs=12.1

Q ss_pred             CccccccccccccChhhHHHHHHhc
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |||+|.+|||+|.++++|+.|+++|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCc
Confidence            4444444444444444444444443

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=2.1e-08  Score=66.68  Aligned_cols=20  Identities=15%  Similarity=0.217  Sum_probs=11.3

Q ss_pred             cccCCHHHHHHHHHhhcCCC
Q 040794          277 KPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~gek  296 (375)
                      |.|...++|.+|+++|+|+|
T Consensus        28 k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          28 KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEECSSSSHHHHHHHHTTTC
T ss_pred             ccccCchHHHhhcccccCCC
Confidence            55555555555555555554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.4e-07  Score=55.81  Aligned_cols=26  Identities=27%  Similarity=0.732  Sum_probs=21.1

Q ss_pred             CCeee-e--cCcccCChHHHHHHHHHhCCC
Q 040794          322 KLWYC-I--CGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       322 k~~~C-~--Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      |||+| .  |+|+|++++.|++|+|+ |+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~-HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI-HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH-HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc-cCC
Confidence            68888 4  88888888888888888 554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.9e-07  Score=53.83  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=19.3

Q ss_pred             cccccCC--CCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCC
Q 040794          256 LRLPCYC--CAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       256 ~~~~C~~--Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~ge  295 (375)
                      |||.|..  |+            |.|...++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCg------------k~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCR------------KSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCC------------CCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCC------------ceECChhHhhhhcCcCcCC
Confidence            4566766  66            7777777777777777764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=3.2e-07  Score=55.50  Aligned_cols=24  Identities=25%  Similarity=0.570  Sum_probs=16.1

Q ss_pred             CCCeee-e--cCcccCChHHHHHHHHH
Q 040794          321 GKLWYC-I--CGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       321 ~k~~~C-~--Cgk~F~~~~~L~~H~r~  344 (375)
                      ||||.| .  |||+|++++.|++|+++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            466666 4  66777777777777666

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=3.4e-07  Score=55.36  Aligned_cols=27  Identities=33%  Similarity=0.662  Sum_probs=21.1

Q ss_pred             CCcccccc--ccccccChhhHHHHHHhcC
Q 040794          295 IKPFMCRK--CGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       295 ekpy~C~~--Cgk~F~~~~~L~~H~k~h~  321 (375)
                      +|||.|..  |||+|++.++|++|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            57888876  8888888888888888774

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5e-07  Score=53.82  Aligned_cols=19  Identities=26%  Similarity=0.169  Sum_probs=13.4

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      |.|+..++|.+|+|+|+||
T Consensus        12 k~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3          12 KRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEESCHHHHHHHHHHHHCC
T ss_pred             ceECcHHHcCccccccCCC
Confidence            7777777777777777664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.8e-07  Score=53.18  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             cccccC--CCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          256 LRLPCY--CCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       256 ~~~~C~--~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +||.|+  .|+            |.|+..++|.+|+|+|+|+|
T Consensus         1 kpf~C~~~~C~------------k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCG------------KRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCC------------CBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCC------------cCcCChhHhhhhcCcccccC
Confidence            468885  488            99999999999999999886

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.6e-07  Score=52.94  Aligned_cols=23  Identities=30%  Similarity=0.771  Sum_probs=15.1

Q ss_pred             CCeee-e--cCcccCChHHHHHHHHH
Q 040794          322 KLWYC-I--CGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       322 k~~~C-~--Cgk~F~~~~~L~~H~r~  344 (375)
                      |||.| .  |||+|++.++|++|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            46666 3  66666666666666666

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.6e-06  Score=49.04  Aligned_cols=24  Identities=38%  Similarity=0.710  Sum_probs=13.2

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHH
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +|||.| +||+.|+++...++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            355555 555555555555555555

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.4e-06  Score=47.67  Aligned_cols=25  Identities=36%  Similarity=0.736  Sum_probs=23.4

Q ss_pred             ceecCcccccccCchHHhhcccccC
Q 040794          213 QFSCPVCCKTFNRYNNMQMHMWGHG  237 (375)
Q Consensus       213 p~~C~~C~k~F~~~~~L~~H~~~H~  237 (375)
                      |++|++|+|.|+++..|.+||+.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999993

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.9e-07  Score=52.17  Aligned_cols=25  Identities=28%  Similarity=0.689  Sum_probs=23.7

Q ss_pred             Ccccccc--ccccccChhhHHHHHHhc
Q 040794          296 KPFMCRK--CGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       296 kpy~C~~--Cgk~F~~~~~L~~H~k~h  320 (375)
                      |||.|..  |||+|++.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            7999987  999999999999999987

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-06  Score=47.58  Aligned_cols=25  Identities=36%  Similarity=0.796  Sum_probs=18.0

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      |++| .|+|.|+++..|+.|+|. |+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~-htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC-HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG-CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc-cCC
Confidence            4567 777777777777777777 554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=2.7e-06  Score=48.06  Aligned_cols=28  Identities=36%  Similarity=0.692  Sum_probs=25.9

Q ss_pred             CCccccccccccccChhhHHHHHHhcCC
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNCGK  322 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h~k  322 (375)
                      +|||.|..||+.|++....++|.++|-|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~k   28 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHLR   28 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGCC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhccC
Confidence            6999999999999999999999998853

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.8e-06  Score=48.82  Aligned_cols=31  Identities=32%  Similarity=0.593  Sum_probs=27.6

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHAAYG  353 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~~y~  353 (375)
                      |...| .|||.|.....|.+|.-. |+|||||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkls-hs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcc-cCCCCCCC
Confidence            55678 899999999999999998 99999984

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=3.7e-06  Score=49.48  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=10.2

Q ss_pred             cccCCHHHHHHHHHhhcC
Q 040794          277 KPLKDFRTLQTHYKRKHG  294 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~g  294 (375)
                      |.|...++|.+|+|+|+|
T Consensus        12 k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1          12 RRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEESSHHHHHHHTHHHHT
T ss_pred             cEECchhHhhhhcCccCC
Confidence            555555555555555554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5.8e-06  Score=46.11  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=22.5

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      -+.| .|||+|..++.|++|.-+ |+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv-htge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV-HTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG-TSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc-ccCC
Confidence            4678 899999999999999988 7775

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.5e-06  Score=52.86  Aligned_cols=30  Identities=40%  Similarity=0.891  Sum_probs=25.9

Q ss_pred             cCCCccccccccccccChhhHHHHHHhcCC
Q 040794          293 HGIKPFMCRKCGKAFAVRGDWRTHEKNCGK  322 (375)
Q Consensus       293 ~gekpy~C~~Cgk~F~~~~~L~~H~k~h~k  322 (375)
                      +|.|||.|..|+|.|.++.++.+|...++|
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            588999999999999999999999876554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.5e-05  Score=45.60  Aligned_cols=25  Identities=28%  Similarity=0.723  Sum_probs=22.3

Q ss_pred             CCeee-e--cCcccCChHHHHHHHHHhC
Q 040794          322 KLWYC-I--CGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       322 k~~~C-~--Cgk~F~~~~~L~~H~r~~H  346 (375)
                      |||.| +  |+|+|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            68999 3  9999999999999999855

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.4e-05  Score=46.86  Aligned_cols=32  Identities=28%  Similarity=0.564  Sum_probs=29.1

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCCccc
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFM  299 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gekpy~  299 (375)
                      +...|..||            |.|.+...|++|...|+|+|||.
T Consensus         4 k~~~ce~cg------------k~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICG------------KIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTT------------EEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHH------------HHHHHHHHHHhhhcccCCCCCCC
Confidence            456799999            99999999999999999999984

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.2e-05  Score=42.51  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      |||.| .|..+-+.+++|+.|+++.|..++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhskek   30 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccccccccccccchhhhhhhhcccccCC
Confidence            68888 788888888899999988887764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=6.1e-05  Score=43.04  Aligned_cols=24  Identities=33%  Similarity=0.820  Sum_probs=17.0

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHH
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +|||.| +|+.+|+++..+.-|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeec
Confidence            467777 777777777777777776

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.4e-05  Score=41.52  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=23.9

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      .|.| .||...+..+-|++|+|+ |++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs-HT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT-HTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-TSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHH-hcCCC
Confidence            3789 899999999999999999 88875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00017  Score=40.42  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          258 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       258 ~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      |.|..||            ..-+..+-|++|+|.|++++
T Consensus         2 YvC~~Cg------------~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECG------------IRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTC------------CBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccC------------cccCCHHHHHHHHHHhcCCC
Confidence            7899999            77778899999999999875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=9.8e-05  Score=42.17  Aligned_cols=27  Identities=26%  Similarity=0.576  Sum_probs=23.2

Q ss_pred             CCccccccccccccChhhHHHHHHhcC
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNCG  321 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h~  321 (375)
                      +|||.|++|+..|.++.-+.-|.+.|+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            588999999999999988888888774

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00023  Score=39.35  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             CCeee-ecCcccCChHHHHHHHHH
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |||+| .|..+-...++|++|+|+
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri   25 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI   25 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhhc
Confidence            68888 788888888888888888

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00018  Score=40.10  Aligned_cols=27  Identities=22%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      ++||+| .|..+-..++.|..|+|. |+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~-htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS-HTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT-CCS
T ss_pred             CCcceeeecccccCCchheEEeeec-ccC
Confidence            478888 788888888888888887 666

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00017  Score=39.47  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=22.0

Q ss_pred             ee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          325 YC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       325 ~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      +| .|.|.|..+-.|+.|-|. |+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~-htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc-ccCCC
Confidence            58 899999999999999998 78875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00024  Score=39.43  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=21.3

Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCC
Q 040794          258 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       258 ~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|..||            |.|...+.|++|..+|+|+
T Consensus         3 hvc~ecg------------kaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECG------------KAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTC------------CEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHh------------HHHHHHHHHHHHhhcccCC
Confidence            4688888            8888888888888888875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00039  Score=38.73  Aligned_cols=27  Identities=19%  Similarity=0.448  Sum_probs=17.5

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHG  294 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~g  294 (375)
                      +||+|..|.            ..-...+.|..|+|.|+|
T Consensus         2 rpfkcqlcs------------y~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICP------------YASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSS------------CEESSHHHHHHHHTTCCS
T ss_pred             Ccceeeecc------------cccCCchheEEeeecccC
Confidence            566666666            555566666666666665

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.0007  Score=36.96  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             ccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          259 PCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       259 ~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +|+.|.            |.|..+.-|+.|-|.|+|+|
T Consensus         2 qcp~c~------------k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCH------------KKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTC------------CCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchH------------HHHHHhHhhhhccccccCCC
Confidence            588998            99999999999999999986

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.66  E-value=0.00055  Score=38.25  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=19.5

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHh
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAF  345 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~  345 (375)
                      .||.|   -|+|+|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            47888   3888888888888888873

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.64  E-value=0.00045  Score=39.70  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=19.6

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGNG  348 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~g  348 (375)
                      ||.| +|++.|+++.-|.+|...-|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            6778 7888888888888887665665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00056  Score=37.79  Aligned_cols=26  Identities=27%  Similarity=0.554  Sum_probs=22.0

Q ss_pred             CCccccccccccccChhhHHHHHHhc
Q 040794          295 IKPFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       295 ekpy~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      .|||+|..|..+-...++|..|+++|
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCCcccccccchhcchhhHhhhhhcc
Confidence            37888888888888888888888876

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.61  E-value=0.00051  Score=38.39  Aligned_cols=25  Identities=32%  Similarity=0.723  Sum_probs=19.0

Q ss_pred             Ccccccc--ccccccChhhHHHHHHhc
Q 040794          296 KPFMCRK--CGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       296 kpy~C~~--Cgk~F~~~~~L~~H~k~h  320 (375)
                      .||+|+.  |+|+|+..+-|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4777864  888888888888887765

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.58  E-value=0.0005  Score=36.98  Aligned_cols=21  Identities=29%  Similarity=0.759  Sum_probs=15.3

Q ss_pred             eee-ecCcccCChHHHHHHHHH
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      |+| .|.++|..++.|.+|+|.
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            567 777777777777777776

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.47  E-value=0.0006  Score=36.66  Aligned_cols=23  Identities=22%  Similarity=0.590  Sum_probs=22.2

Q ss_pred             eecCcccccccCchHHhhccccc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      |+|..|.++|..++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            68999999999999999999998

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.46  E-value=0.00096  Score=40.71  Aligned_cols=28  Identities=18%  Similarity=0.596  Sum_probs=21.4

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCCCCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGNGHA  350 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge~  350 (375)
                      +.|.| .|+|.|....+|--||+. |..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~-Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV-HRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT-TCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhh-hcchH
Confidence            56888 888888888888888888 55443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.001  Score=37.84  Aligned_cols=23  Identities=35%  Similarity=0.823  Sum_probs=11.2

Q ss_pred             Ccccccc--ccccccChhhHHHHHH
Q 040794          296 KPFMCRK--CGKAFAVRGDWRTHEK  318 (375)
Q Consensus       296 kpy~C~~--Cgk~F~~~~~L~~H~k  318 (375)
                      |||.|..  |+|+++..++|+.|++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k   25 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVK   25 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHH
Confidence            3444433  4555555555555544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00075  Score=41.55  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             cCCCceecCcccccccCchHHhhccc
Q 040794          209 IGPTQFSCPVCCKTFNRYNNMQMHMW  234 (375)
Q Consensus       209 ~g~kp~~C~~C~k~F~~~~~L~~H~~  234 (375)
                      +|.|||.|..|+|.|-++..+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47799999999999999999999974

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0015  Score=36.51  Aligned_cols=22  Identities=36%  Similarity=0.763  Sum_probs=11.6

Q ss_pred             Ceee-ecCcccCChHHHHHHHHH
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      ||.| .|.-+|+.+.+|.+||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            4555 555555555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0013  Score=36.77  Aligned_cols=23  Identities=30%  Similarity=0.807  Sum_probs=21.4

Q ss_pred             ccccccccccccChhhHHHHHHh
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      ||.|..|.-+|..+++|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999984

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0019  Score=35.45  Aligned_cols=22  Identities=41%  Similarity=0.898  Sum_probs=15.4

Q ss_pred             ccccccccccccChhhHHHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ||+|.+|||.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5677777777777777777653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0018  Score=37.10  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=16.8

Q ss_pred             CCeee-e--cCcccCChHHHHHHH-HHhCC
Q 040794          322 KLWYC-I--CGSDFKHKRSLKDHI-KAFGN  347 (375)
Q Consensus       322 k~~~C-~--Cgk~F~~~~~L~~H~-r~~H~  347 (375)
                      |||.| .  |.|+|+..+.-.+|+ |+ |.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT-Hs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT-HS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT-TC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc-cc
Confidence            56777 2  777777777777776 55 44

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0046  Score=34.58  Aligned_cols=26  Identities=31%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhCC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H~  347 (375)
                      +||+| .|.-.-++.++|.+|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            57777 777777777777777776553

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0039  Score=34.96  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             CccccccccccccChhhHHHHHHh
Q 040794          296 KPFMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       296 kpy~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      |||+|..|....+..++|+.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            689999999999999999999985

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0025  Score=36.52  Aligned_cols=25  Identities=40%  Similarity=0.907  Sum_probs=21.8

Q ss_pred             Ccccccc--ccccccChhhHHHHH-Hhc
Q 040794          296 KPFMCRK--CGKAFAVRGDWRTHE-KNC  320 (375)
Q Consensus       296 kpy~C~~--Cgk~F~~~~~L~~H~-k~h  320 (375)
                      |||.|..  |.|+|++.++--.|+ ++|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            6899977  999999999999997 666

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.39  E-value=0.0032  Score=36.03  Aligned_cols=22  Identities=32%  Similarity=0.702  Sum_probs=20.6

Q ss_pred             ccccccccccccChhhHHHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ||.|..|++.|+++.-|.+|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            7999999999999999999976

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.29  E-value=0.0032  Score=35.23  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=22.3

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |||.|   -|.|.|.....|.+|.-+ |+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t-htge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH-HHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhcc-ccCC
Confidence            68888   399999999999999888 6664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.01  Score=33.02  Aligned_cols=28  Identities=21%  Similarity=0.687  Sum_probs=20.8

Q ss_pred             CCCeee-ecCcccCChHHHHHHHHHhCCCC
Q 040794          321 GKLWYC-ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       321 ~k~~~C-~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      +.-|.| .|...|++.-.|+.||-. |+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs-htge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS-HTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH-HSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec-ccCC
Confidence            345778 788888888888888877 6664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0075  Score=36.42  Aligned_cols=26  Identities=31%  Similarity=0.738  Sum_probs=14.6

Q ss_pred             CCcccc--ccccccccChhhHHHHHHhc
Q 040794          295 IKPFMC--RKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       295 ekpy~C--~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      +|||.|  +-|+.+|++...|..|++.|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            456666  33555666555555555544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0096  Score=34.81  Aligned_cols=22  Identities=45%  Similarity=0.972  Sum_probs=12.2

Q ss_pred             cccccccccccChhhHHHHHHh
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKN  319 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~  319 (375)
                      |.|.+|||.|+++..+.+|-..
T Consensus         5 fvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhhh
Confidence            5555555555555555555543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.61  E-value=0.0095  Score=33.25  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~ge  295 (375)
                      +||+|..=|+.          |.|...-.|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~----------kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCE----------KGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCC----------CEESSTTHHHHHHHHHHTC
T ss_pred             CCcCccccccc----------ccchhhhhhhhhhccccCC
Confidence            46778764432          8888888888888888875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.38  E-value=0.016  Score=35.12  Aligned_cols=29  Identities=14%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCCC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIK  296 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~gek  296 (375)
                      +.|.|..|+            |.|.+...|-.|++.|..++
T Consensus         4 r~~~C~~C~------------k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCK------------REFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTC------------CEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCC------------CccCCcccccchHhhhcchH
Confidence            346666666            66666666666666665443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.25  E-value=0.01  Score=31.68  Aligned_cols=21  Identities=29%  Similarity=0.846  Sum_probs=11.8

Q ss_pred             ccccccccccccChhhHHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHE  317 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~  317 (375)
                      ||+|.-|...|.++.+|..||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            455555555555555555554

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.09  E-value=0.0094  Score=32.65  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.6

Q ss_pred             ceecCcccccccCchHHhhcccc
Q 040794          213 QFSCPVCCKTFNRYNNMQMHMWG  235 (375)
Q Consensus       213 p~~C~~C~k~F~~~~~L~~H~~~  235 (375)
                      ||+|..|||.+-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            69999999999999999998743

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.023  Score=30.33  Aligned_cols=22  Identities=27%  Similarity=0.721  Sum_probs=20.4

Q ss_pred             Ceee-ecCcccCChHHHHHHHHH
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      ||+| .|...|-++..|..||-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            7999 999999999999999854

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.027  Score=31.27  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             cccccCCCCCCCCCCCCCCCCcccCCHHHHHHHHHhhcCC
Q 040794          256 LRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       256 ~~~~C~~Cg~~~~~~~~h~~~k~f~~~~~L~~H~r~H~ge  295 (375)
                      .-|.|..|.            ..|+..-.|..|+-.|+|+
T Consensus         3 qvftcs~cq------------e~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQ------------ETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSC------------CEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHH------------HHHHHHHhheeeeecccCC
Confidence            347788887            7888888888888888775

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.02  Score=31.43  Aligned_cols=21  Identities=29%  Similarity=0.669  Sum_probs=14.2

Q ss_pred             cccccccccccChhhHHHHHH
Q 040794          298 FMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      |+|+.|+...+++++|+.|++
T Consensus         3 ~qcphc~tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhh
Confidence            566666666666666666665

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.022  Score=33.53  Aligned_cols=19  Identities=32%  Similarity=0.529  Sum_probs=18.1

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 040794          277 KPLKDFRTLQTHYKRKHGI  295 (375)
Q Consensus       277 k~f~~~~~L~~H~r~H~ge  295 (375)
                      +.|+....|..|+|+||||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            8999999999999999986

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.038  Score=30.25  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=22.5

Q ss_pred             Ceee-ecCcccCChHHHHHHHHHhCC
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r~~H~  347 (375)
                      .|+| .|+---++++.|+.|+|..|+
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCcchhheeehhhhhHHhhhccc
Confidence            4899 999999999999999998664

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.031  Score=31.11  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=9.8

Q ss_pred             ccccccccccccChhhHHHHHH
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEK  318 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k  318 (375)
                      ||+|..|.---.+.++|..|++
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHH
Confidence            4444444444444444444443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.035  Score=33.42  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=23.0

Q ss_pred             CCCeee---ecCcccCChHHHHHHHHHh
Q 040794          321 GKLWYC---ICGSDFKHKRSLKDHIKAF  345 (375)
Q Consensus       321 ~k~~~C---~Cgk~F~~~~~L~~H~r~~  345 (375)
                      +|||.|   -|+.+|..-..|..|.+.|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            799999   4999999999999999984

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.029  Score=35.53  Aligned_cols=23  Identities=35%  Similarity=0.670  Sum_probs=11.3

Q ss_pred             cccccccccccChhhHHHHHHhc
Q 040794          298 FMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       298 y~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |.|..|||.|+....|+.|...|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            44555555555555555554433

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.50  E-value=0.02  Score=30.64  Aligned_cols=22  Identities=41%  Similarity=0.875  Sum_probs=20.5

Q ss_pred             eecCcccccccCchHHhhcccc
Q 040794          214 FSCPVCCKTFNRYNNMQMHMWG  235 (375)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~  235 (375)
                      |.|+.|-|-|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999874

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.028  Score=32.80  Aligned_cols=25  Identities=40%  Similarity=0.642  Sum_probs=21.6

Q ss_pred             CceecCcccccccCchHHhhccccc
Q 040794          212 TQFSCPVCCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       212 kp~~C~~C~k~F~~~~~L~~H~~~H  236 (375)
                      ..|.|..|+|+|.++..+.+|-..-
T Consensus         3 ~afvcskcgktftrrntm~rha~nc   27 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNC   27 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHC
T ss_pred             ceeeecccccchhcchHHHHHhhhc
Confidence            3699999999999999999987544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.043  Score=34.70  Aligned_cols=25  Identities=28%  Similarity=0.687  Sum_probs=22.4

Q ss_pred             CCeee-ecCcccCChHHHHHHHHHhC
Q 040794          322 KLWYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       322 k~~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      -.|.| .|||.|.....|+.|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35889 99999999999999999864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.026  Score=33.24  Aligned_cols=27  Identities=30%  Similarity=0.552  Sum_probs=21.0

Q ss_pred             CCeee---ecC---cccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC---ICG---SDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C---~Cg---k~F~~~~~L~~H~r~~H~ge  349 (375)
                      |.|.|   .|.   +.|+.+..|..|||. |+||
T Consensus         1 k~y~C~W~~C~R~~~pf~a~YkLv~H~R~-HTgE   33 (33)
T d2glia2           1 KEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGE   33 (33)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHH-HHCC
T ss_pred             CCeEEECCCCCCCCCcchhHHHHHHHHhh-cCCC
Confidence            34677   365   469999999999998 7876

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.11  E-value=0.08  Score=28.23  Aligned_cols=23  Identities=26%  Similarity=0.693  Sum_probs=13.8

Q ss_pred             eee-ecCcccCChHHHHHHHHHhC
Q 040794          324 WYC-ICGSDFKHKRSLKDHIKAFG  346 (375)
Q Consensus       324 ~~C-~Cgk~F~~~~~L~~H~r~~H  346 (375)
                      |.| .|-|.|.++.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            456 66666666666666665543

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.05  Score=29.85  Aligned_cols=20  Identities=25%  Similarity=0.469  Sum_probs=10.7

Q ss_pred             ee-ecCcccCChHHHHHHHHH
Q 040794          325 YC-ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       325 ~C-~Cgk~F~~~~~L~~H~r~  344 (375)
                      +| .|..+.+.+..|+.|.|+
T Consensus         4 kc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGG
T ss_pred             cCcccccccCcHHHHHHhhcc
Confidence            44 455555555555555555

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.41  E-value=0.094  Score=28.43  Aligned_cols=21  Identities=38%  Similarity=0.757  Sum_probs=18.4

Q ss_pred             eee---ecCcccCChHHHHHHHHH
Q 040794          324 WYC---ICGSDFKHKRSLKDHIKA  344 (375)
Q Consensus       324 ~~C---~Cgk~F~~~~~L~~H~r~  344 (375)
                      |.|   .|+|+|+.-..|+.|+-+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeec
Confidence            778   499999999999999887

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.092  Score=28.77  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=21.8

Q ss_pred             ccccccccccccChhhHHHHHHhc
Q 040794          297 PFMCRKCGKAFAVRGDWRTHEKNC  320 (375)
Q Consensus       297 py~C~~Cgk~F~~~~~L~~H~k~h  320 (375)
                      |-+|.+|..+...+..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            568999999999999999998875

>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: KRAB domain (Kruppel-associated box)
superfamily: KRAB domain (Kruppel-associated box)
family: KRAB domain (Kruppel-associated box)
domain: hypotheical protein 2610044O15Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.87  E-value=0.034  Score=38.01  Aligned_cols=29  Identities=14%  Similarity=-0.023  Sum_probs=25.3

Q ss_pred             cHHHHhhhccccccccceeeeeccCCCCC
Q 040794          128 STATAALHHEDDDETTAVTVALHIGLPSP  156 (375)
Q Consensus       128 ~~~q~~~~~e~~~e~~~~~v~l~~~~~~~  156 (375)
                      +++|+++|+++|.|++.++++++.....+
T Consensus        26 d~~Qk~LyrdVm~Eny~~l~slg~~~~~~   54 (64)
T d1v65a_          26 DSSQKRLYEEVMLETYQNLTDIGYNWQDH   54 (64)
T ss_dssp             CHHHHHHHHHHHHHTTTSCCCSCCCCCCC
T ss_pred             CHHHHHHHHHhHHHHhhhhheeccCcCCC
Confidence            67899999999999999999998765544

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.85  E-value=0.1  Score=29.41  Aligned_cols=27  Identities=26%  Similarity=0.699  Sum_probs=23.7

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHhCCCC
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAFGNGH  349 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~H~ge  349 (375)
                      |.|.|   .|+..|.....|..|+-. |+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLck-HTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSK-HTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHH-HHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhh-hcCC
Confidence            67889   699999999999999988 7775

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=86.82  E-value=0.32  Score=26.88  Aligned_cols=26  Identities=35%  Similarity=0.660  Sum_probs=21.7

Q ss_pred             CCeee---ecCcccCChHHHHHHHHHhCC
Q 040794          322 KLWYC---ICGSDFKHKRSLKDHIKAFGN  347 (375)
Q Consensus       322 k~~~C---~Cgk~F~~~~~L~~H~r~~H~  347 (375)
                      |.|.|   .|+-+|..+.++++|...+|.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            45788   499999999999999888775

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.11  Score=35.77  Aligned_cols=21  Identities=33%  Similarity=0.700  Sum_probs=12.5

Q ss_pred             Ceee-ecCcccCChHHHHHHHH
Q 040794          323 LWYC-ICGSDFKHKRSLKDHIK  343 (375)
Q Consensus       323 ~~~C-~Cgk~F~~~~~L~~H~r  343 (375)
                      .|.| .|+|.|.....|..|++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            3566 56666666666666554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.37  Score=32.42  Aligned_cols=23  Identities=35%  Similarity=0.791  Sum_probs=18.1

Q ss_pred             cCCCceecCcccccccCchHHhh
Q 040794          209 IGPTQFSCPVCCKTFNRYNNMQM  231 (375)
Q Consensus       209 ~g~kp~~C~~C~k~F~~~~~L~~  231 (375)
                      +....|+|+.|+++|+....++.
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L   32 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL   32 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH
T ss_pred             ccCCceECCCCCCCcchhhHHHh
Confidence            34457999999999998776654

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.52  E-value=0.28  Score=26.52  Aligned_cols=23  Identities=30%  Similarity=0.892  Sum_probs=19.6

Q ss_pred             eecCc--ccccccCchHHhhccccc
Q 040794          214 FSCPV--CCKTFNRYNNMQMHMWGH  236 (375)
Q Consensus       214 ~~C~~--C~k~F~~~~~L~~H~~~H  236 (375)
                      |.|..  |+|.|.....|+.|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            56644  999999999999999877