BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040795
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 GLQIKKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRATVNSVKERLSFATFYNP 60
GLQ+ KDG+W+ V P + VVN+GD LE+ TNG Y+S+ HR R S A+FYNP
Sbjct: 194 GLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNP 253
Query: 61 KLDGELGPAPSLI---TPKTPALFKKINVVDYFKRFFSTELRGKS 102
D + PAP+L+ + ++ K DY K + + + K
Sbjct: 254 GSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKE 298
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 1 GLQIKKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRATVNSVKERLSFATFYNP 60
GLQ+ +GKWV K +PD+ V++IGD LEI +NG Y+SI HR VN K R+S+A F P
Sbjct: 248 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307
Query: 61 KLDG-ELGPAPSLITPKTPALF 81
D L P P +++ ++PA F
Sbjct: 308 PKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 1 GLQIKKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRATVNSVKERLSFATFYNP 60
GLQ+ +GKWV K +PD+ V++IGD LEI +NG Y+SI HR VN K R+S+A F P
Sbjct: 247 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 306
Query: 61 KLDG-ELGPAPSLITPKTPALF 81
D L P P +++ ++PA F
Sbjct: 307 PKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 1 GLQIKKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRATVNSVKERLSFATFYNP 60
GLQ+ +GKWV K +PD+ V +IGD LEI +NG Y+SI HR VN K R+S+A F P
Sbjct: 248 GLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307
Query: 61 KLDG-ELGPAPSLITPKTPALF 81
D L P P ++ ++PA F
Sbjct: 308 PKDKIVLKPLPEXVSVESPAKF 329
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 1 GLQI-KKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRATVNSVKERLSFATFYN 59
GL++ +DG+W+ + P P V+NIGD LE TN S HR VN ER +
Sbjct: 207 GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPRYST 265
Query: 60 P-----KLDGELGPAPSLITPKTPALFKKINVVDYF 90
P D E+ + +T + P + + D F
Sbjct: 266 PFFLHFASDYEIKTLQNCVTAENPDRYPESITADEF 301
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1 GLQIK-KDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRAT----VNSVKERLSFA 55
GLQ+K KDG W+ V ++NIGD L+ ++G + S HR + K R+S
Sbjct: 190 GLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLP 249
Query: 56 TFYNPK 61
F +P
Sbjct: 250 LFLHPH 255
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 53 SFATFYNPKLDGELGPAPSLITPKTPALFKKINVVDYFKRFFSTELRGKSFIDFLK 108
S + P+L+GE+G +I P P K + +D R +S E + + ++
Sbjct: 35 SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDP-DRSYSMEGYADAMTEVMQ 89
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 53 SFATFYNPKLDGELGPAPSLITPKTPALFKKINVVDYFKRFFSTELRGKSFIDFLK 108
S + P+L+GE+G +I P P K + +D R +S E + + ++
Sbjct: 35 SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDP-DRSYSMEGYADAMTEVMQ 89
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 53 SFATFYNPKLDGELGPAPSLITPKTPALFKKINVVDYFKRFFSTELRGKSFIDFLK 108
S + P+L+GE+G +I P P K + +D R +S E + + ++
Sbjct: 35 SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDP-DRSYSMEGYADAMTEVMQ 89
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 2 LQIKKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRAT-VNSVKERLSFATFYNP 60
LQ++ + ++ +++N G + TN Y++ HR VN+ ++ L F F N
Sbjct: 231 LQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPF--FVNL 288
Query: 61 KLDGELGP 68
D + P
Sbjct: 289 GYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 2 LQIKKDGKWVAVKPLPDAFVVNIGDALEIFTNGTYRSIEHRAT-VNSVKERLSFATFYNP 60
LQ++ + ++ +++N G + TN Y++ HR VN+ ++ L F F N
Sbjct: 231 LQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPF--FVNL 288
Query: 61 KLDGELGP 68
D + P
Sbjct: 289 GYDSVIDP 296
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 22 VNIGDALEIFTNGTYRSIEHRATVNSVKERLSFATFYNPKLDGELGPAPSLITPKTPALF 81
VN D L +F + +R ++ + V+++ R+ A Y P L E+G IT
Sbjct: 263 VNEQDVL-LFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSI 321
Query: 82 KKINVV 87
I V
Sbjct: 322 TSIQAV 327
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 47 SVKERLSFATFYNPKLDGELGPAPSLI 73
SVK+RL FA + + +G+L P S++
Sbjct: 70 SVKDRLGFAIYDKAEKEGKLIPGKSVV 96
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 39 IEHRATVNSVKERLSFATFYNPKLDGELGPAPSLI 73
+E+ ++SVK+R+ F Y DG L P +I
Sbjct: 48 LEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEII 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,078
Number of Sequences: 62578
Number of extensions: 132789
Number of successful extensions: 323
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 17
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)