BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040797
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48276|YCF36_CYAPA Uncharacterized protein ycf36 OS=Cyanophora paradoxa GN=ycf36 PE=3
SV=1
Length = 159
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 6/158 (3%)
Query: 76 TECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVG 135
T CP+P +QQP+NEYQ L++S F+W S Y LF T S + + ++ +
Sbjct: 3 TFCPIPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLF-TIYSIGFLLTFLITFYNDLF 61
Query: 136 PDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA 195
P+ + + G V+ L ++R+YLGW+Y+ RLLSATV YEE+GWYDGQIWVK++
Sbjct: 62 I-VHPVNIFVHGIIGGNFVLILDLLRLYLGWSYICQRLLSATVSYEESGWYDGQIWVKSS 120
Query: 196 EVLARDRLLGSFSVKPVLSRLKYTL----ITLGASLFV 229
EVL +DRL+G + V+PVL+RLK TL + LG +L +
Sbjct: 121 EVLIQDRLIGIYQVRPVLNRLKQTLGVVILILGFTLLI 158
>sp|P51273|YCF36_PORPU Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3
SV=1
Length = 165
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 73 LPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFG 132
L +CPVP +QQP+NEY +L +S+ F W + Y ++ +T + V PV
Sbjct: 3 LYNNQCPVPLEQQPVNEYNSLKNSWFFCWPTLSSHSYNKKITITLIATCFLVS-PV--LL 59
Query: 133 AVGPDSE-PLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
++ P ++ PL+ ++ ++R+YLGW+YV RL+SATV YEE+GWYDGQIW
Sbjct: 60 SIFPIAKLPLKFFFSEFIISSLITCFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIW 119
Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTL 220
VK +E+L +DR +G + V P+L+++K TL
Sbjct: 120 VKPSEILVKDRFIGLYEVFPLLNKIKNTL 148
>sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra yezoensis GN=ycf36 PE=3
SV=1
Length = 165
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Query: 73 LPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFG 132
L T+CPVP +QQP++EY +L +S+ F W + Y ++ + L V P+
Sbjct: 3 LYNTQCPVPKEQQPVHEYTSLKNSWFFCWPTLSRRSYNKKITIALLLNCLLVS-PIL--L 59
Query: 133 AVGPDSE-PLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
++ P ++ PL+ + ++ ++R+YLGW+YV RL+SATV YEE+GWYDGQIW
Sbjct: 60 SIFPITKLPLKFFFSEFITSSLMTGFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIW 119
Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTL 220
VK +E+L +DR +G + V P+L+++K TL
Sbjct: 120 VKPSEILLKDRFIGLYEVFPLLNKIKNTL 148
>sp|O78501|YCF36_GUITH Uncharacterized protein ycf36 OS=Guillardia theta GN=ycf36 PE=3
SV=1
Length = 155
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 76 TECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVG 135
CPVP +Q PINEY L+S++ FSWA Y F+ LF+ + +
Sbjct: 1 MNCPVPENQLPINEYNKLTSAWDFSWACKIGKLYYK--FLLKMQLCLFLFFCIC----LN 54
Query: 136 PDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA 195
E L ++ + + L +R YLG+ Y+ RLL + + YEE+ WYDGQ+WVK
Sbjct: 55 FLDSKYETGLYSLILSTLFICLICLRTYLGFRYIYVRLLKSALPYEESSWYDGQVWVKNI 114
Query: 196 EVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALL 233
L +DRL+ ++V P+LSRLK + T+ S +C LL
Sbjct: 115 NYLIKDRLVADYTVLPILSRLKISF-TINFSFLICLLL 151
>sp|A0ZZ60|CLPP_GOSBA ATP-dependent Clp protease proteolytic subunit OS=Gossypium
barbadense GN=clpP PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 190 IWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPT 249
+WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 19 VWVDVYNRLYRERLL--FLGQEVDSEISNQLIGL--------MVYLSIENDTKDLYLFIN 68
Query: 250 EPGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + +PD
Sbjct: 69 SPGGWVIPGVAIYDTMQFVQPDV 91
>sp|Q8K045|PKN3_MOUSE Serine/threonine-protein kinase N3 OS=Mus musculus GN=Pkn3 PE=1
SV=1
Length = 878
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 164 LGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITL 223
LG + G LL V+Y+ TG Y +K EVL RD + + K +L + T
Sbjct: 554 LGRGHFGKVLL---VQYKGTGKYYAIKALKKQEVLGRDEIDSLYCEKRILETVGRTGHPF 610
Query: 224 GASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYND 262
SL C L+ ++T PG + + ++ D
Sbjct: 611 LLSLLAC------LQTSSHACFVTEFLPGGDLMAQIHED 643
>sp|Q2L926|CLPP_GOSHI ATP-dependent Clp protease proteolytic subunit OS=Gossypium
hirsutum GN=clpP PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 190 IWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPT 249
+WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 19 VWVDVYNRLYRERLL--FLGQEVDSEISNQLIGL--------MVYLSIENDTKDLYLFIN 68
Query: 250 EPGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + +PD
Sbjct: 69 SPGGWVIPGVAIYDTMQFVQPDV 91
>sp|Q68RY2|CLPP_PANGI ATP-dependent Clp protease proteolytic subunit OS=Panax ginseng
GN=clpP PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F +PV S + LI L ++ +++E K YL
Sbjct: 20 WVDIYNRLYRERLL--FLGQPVASEISNQLIGL--------MVYLSIEDDTKDLYLFMNS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG +PG+ D+ + PD
Sbjct: 70 PGGWVLPGIAIYDTMQFVRPDV 91
>sp|Q49KX3|CLPP_EUCGG ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus
globulus subsp. globulus GN=clpP PE=3 SV=1
Length = 196
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 20 WVDVYNRLYRERLL--FLGQEVDSEISNQLIGL--------MVYLSIENDNKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + +PD
Sbjct: 70 PGGWVIPGVAIYDTMQFVQPDV 91
>sp|Q9BBQ9|CLPP_LOTJA ATP-dependent Clp protease proteolytic subunit OS=Lotus japonicus
GN=clpP PE=3 SV=1
Length = 196
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E +K YL
Sbjct: 20 WVDIYNRLYRERLL--FLGQEVNSEISNQLIGL--------MVYLSIEDDKKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPG+ D+ + +PD
Sbjct: 70 PGGWVIPGIAIYDTMQFVQPDV 91
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 RLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCA 231
RL +E EE DG + +K V LLG S+ L+ L ++ +G+ L
Sbjct: 279 RLFMLLLEKEEQ--MDGTVTLKDLRV----ELLGETSIAECLTYLDNGVVFVGSRLGDSQ 332
Query: 232 LLLINLEGGQKGSYLTPTE 250
L+ +N++ ++GSY+ E
Sbjct: 333 LVKLNVDSNEQGSYVVAME 351
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 RLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCA 231
RL +E EE DG + +K V LLG S+ L+ L ++ +G+ L
Sbjct: 279 RLFMLLLEKEEQ--MDGTVTLKDLRV----ELLGETSIAECLTYLDNGVVFVGSRLGDSQ 332
Query: 232 LLLINLEGGQKGSYLTPTE 250
L+ +N++ ++GSY+ E
Sbjct: 333 LVKLNVDSNEQGSYVVAME 351
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 RLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCA 231
RL +E EE DG + +K V LLG S+ L+ L ++ +G+ L
Sbjct: 279 RLFMLLLEKEEQ--MDGTVTLKDLRV----ELLGETSIAECLTYLDNGVVFVGSRLGDSQ 332
Query: 232 LLLINLEGGQKGSYLTPTE 250
L+ +N++ ++GSY+ E
Sbjct: 333 LVKLNVDSNEQGSYVVAME 351
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 RLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCA 231
RL +E EE DG + +K V LLG S+ L+ L ++ +G+ L
Sbjct: 279 RLFMLLLEKEEQ--MDGTVTLKDLRV----ELLGETSIAECLTYLDNGVVFVGSRLGDSQ 332
Query: 232 LLLINLEGGQKGSYLTPTE 250
L+ +N++ ++GSY+ E
Sbjct: 333 LVKLNVDSNEQGSYVVAME 351
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 RLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCA 231
RL +E EE DG + +K V LLG S+ L+ L ++ +G+ L
Sbjct: 279 RLFMLLLEKEEQ--MDGTVTLKDLRV----ELLGETSIAECLTYLDNGVVFVGSRLGDSQ 332
Query: 232 LLLINLEGGQKGSYLTPTE 250
L+ +N++ ++GSY+ E
Sbjct: 333 LVKLNVDSNEQGSYVVAME 351
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 172 RLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCA 231
RL +E EE DG + +K V LLG S+ L+ L ++ +G+ L
Sbjct: 279 RLFMLLLEKEEQ--MDGTVTLKDLRV----ELLGETSIAECLTYLDNGVVFVGSRLGDSQ 332
Query: 232 LLLINLEGGQKGSYLTPTE 250
L+ +N++ ++GSY+ E
Sbjct: 333 LVKLNVDSNEQGSYVVAME 351
>sp|Q2PMR0|CLPP_SOYBN ATP-dependent Clp protease proteolytic subunit OS=Glycine max
GN=clpP PE=3 SV=1
Length = 196
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI+L ++ +++E K YL
Sbjct: 20 WVDIYNRLYRERLL--FLGQEVDSEISNQLISL--------MVYLSIEEENKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPD 271
PG IPG+ D+ + +PD
Sbjct: 70 PGGWVIPGIAIYDTMQFVQPD 90
>sp|Q332V2|CLPP_LACSA ATP-dependent Clp protease proteolytic subunit OS=Lactuca sativa
GN=clpP PE=3 SV=1
Length = 196
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 20 WVDIYNRLYRERLL--FLGQEVDSEISNQLIGL--------MIYLSIEDDTKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + +PD
Sbjct: 70 PGGWVIPGVALYDTMQFVQPDV 91
>sp|A6MMW9|CLPP_ILLOL ATP-dependent Clp protease proteolytic subunit OS=Illicium
oligandrum GN=clpP PE=3 SV=1
Length = 202
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 187 DGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYL 246
+G +WV L R+RLL F + V S + L+ L ++ +++E + YL
Sbjct: 16 EGAVWVDVYNRLHRERLL--FLGQGVDSEISNQLVGL--------MVYLSIEDDTRDLYL 65
Query: 247 TPTEPGDEAIPGVYNDDSAKSFEPD 271
PG IPG+ D+ + PD
Sbjct: 66 FINSPGGWVIPGIAIYDTMQFVPPD 90
>sp|A0A360|CLPP_COFAR ATP-dependent Clp protease proteolytic subunit OS=Coffea arabica
GN=clpP PE=3 SV=1
Length = 196
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 20 WVDVYNRLYRERLL--FLGQAVDSEISNQLIGL--------MIYLSIEDDTKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + PD
Sbjct: 70 PGGWVIPGVAIYDTMQFVRPDV 91
>sp|Q9M3K5|CLPP_SPIOL ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea
GN=clpP PE=3 SV=1
Length = 196
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 20 WVDVYNRLYRERLL--FLGQEVDSEISNQLIGL--------MVYLSIEDDTKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + PD
Sbjct: 70 PGGWVIPGVAIYDTMQFVRPDV 91
>sp|Q06GN5|CLPP_PIPCE ATP-dependent Clp protease proteolytic subunit OS=Piper cenocladum
GN=clpP PE=3 SV=1
Length = 202
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + ++ L ++ +++E G + YL
Sbjct: 20 WVDVYNRLHRERLL--FLGQEVDSEISNQIVGL--------MVYLSIEDGTRDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPG+ D+ + PD
Sbjct: 70 PGGWVIPGIAIYDTMQFVSPDV 91
>sp|Q0G9T7|CLPP_DAUCA ATP-dependent Clp protease proteolytic subunit OS=Daucus carota
GN=clpP PE=3 SV=1
Length = 197
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 20 WVDVYNRLYRERLL--FLGQEVDSEISNQLIGL--------MVYLSIENDTKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + PD
Sbjct: 70 PGGWVIPGVAIYDTMQFVRPDV 91
>sp|Q09WZ2|CLPP_MORIN ATP-dependent Clp protease proteolytic subunit OS=Morus indica
GN=clpP PE=3 SV=1
Length = 196
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 20 WVDVINRLYRERLL--FLGQEVDSEISNQLIGL--------MVFLSIEDDTKDLYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPG+ D+ + +PD
Sbjct: 70 PGGWVIPGLGIYDTMQFVQPDV 91
>sp|Q7YJV2|CLPP_CALFG ATP-dependent Clp protease proteolytic subunit OS=Calycanthus
floridus var. glaucus GN=clpP PE=3 SV=1
Length = 202
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 190 IWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPT 249
+WV L R+RLL F + V S + L+ L ++ + +E K YL
Sbjct: 19 VWVDVYNRLHRERLL--FLGQEVDSEISNQLVGL--------MVYLTIEDDTKDLYLFIN 68
Query: 250 EPGDEAIPGVYNDDSAKSFEPDA 272
PG IPG+ D+ + PD
Sbjct: 69 SPGGWVIPGIAIYDTMQFVSPDV 91
>sp|A6MM61|CLPP_BUXMI ATP-dependent Clp protease proteolytic subunit OS=Buxus microphylla
GN=clpP PE=3 SV=1
Length = 202
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 190 IWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPT 249
+WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 19 VWVDVYNRLHRERLL--FLGQEVDSEISNQLIGL--------MVYLSIEDDTKDLYLFIN 68
Query: 250 EPGDEAIPGVYNDDSAKSFEPD 271
PG IPG+ D+ + PD
Sbjct: 69 SPGGWVIPGIAIYDTMQFVPPD 90
>sp|Q09FT6|CLPP_NANDO ATP-dependent Clp protease proteolytic subunit OS=Nandina domestica
GN=clpP PE=3 SV=1
Length = 202
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 190 IWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPT 249
+WV L R+RLL F + V S + LI L ++ +++E K YL
Sbjct: 19 VWVDVYNRLYRERLL--FLGQEVDSEISNQLIGL--------MVYLSIEDETKDLYLFIN 68
Query: 250 EPGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + PD
Sbjct: 69 SPGGWVIPGVAIYDTMQFVPPDV 91
>sp|Q2QD64|CLPP_CUCSA ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus
GN=clpP PE=3 SV=1
Length = 195
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 191 WVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTE 250
WV L R RLL F + V + + ++ L ++ +++E G K YL
Sbjct: 20 WVDLYNRLYRQRLL--FLGQDVNNEISNQIMGL--------MVYLSIEDGTKDQYLFINS 69
Query: 251 PGDEAIPGVYNDDSAKSFEPDA 272
PG IPGV D+ + PD
Sbjct: 70 PGGSVIPGVGLFDTMQFVSPDV 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,992,064
Number of Sequences: 539616
Number of extensions: 4721544
Number of successful extensions: 17463
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 17300
Number of HSP's gapped (non-prelim): 205
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)