Query 040797
Match_columns 280
No_of_seqs 90 out of 92
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 11:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06799 DUF1230: Protein of u 100.0 5.4E-76 1.2E-80 498.9 13.3 144 78-223 1-144 (144)
2 PF02009 Rifin_STEVOR: Rifin/s 42.7 27 0.00059 33.6 3.5 42 139-180 252-293 (299)
3 TIGR02745 ccoG_rdxA_fixG cytoc 34.4 3.6E+02 0.0078 27.3 9.9 24 144-167 57-80 (434)
4 PF01569 PAP2: PAP2 superfamil 33.6 47 0.001 25.5 2.9 25 150-174 84-108 (129)
5 PF10163 EnY2: Transcription f 31.0 15 0.00033 28.7 -0.2 7 182-188 29-35 (86)
6 PF07330 DUF1467: Protein of u 30.6 2E+02 0.0043 23.2 6.1 56 114-170 11-79 (85)
7 PF02628 COX15-CtaA: Cytochrom 29.8 4.5E+02 0.0098 24.3 10.4 94 68-173 32-125 (302)
8 PF09925 DUF2157: Predicted me 29.7 50 0.0011 27.5 2.7 38 199-236 14-52 (145)
9 PF03419 Peptidase_U4: Sporula 27.9 1.4E+02 0.003 27.7 5.5 27 163-189 141-167 (293)
10 PF12129 Phtf-FEM1B_bdg: Male 27.5 12 0.00027 33.4 -1.4 16 184-199 15-30 (159)
11 cd01610 PAP2_like PAP2_like pr 26.7 76 0.0016 23.5 3.0 27 147-173 82-108 (122)
12 PRK11017 codB cytosine permeas 24.8 1.1E+02 0.0024 29.5 4.5 7 79-85 3-9 (404)
13 PF14433 SUKH-3: SUKH-3 immuni 23.7 50 0.0011 27.2 1.7 35 180-216 8-42 (142)
14 PF05232 BTP: Bacterial Transm 22.8 89 0.0019 23.7 2.7 43 121-175 17-59 (67)
15 PF11174 DUF2970: Protein of u 22.4 1.1E+02 0.0025 22.8 3.1 23 137-159 27-49 (56)
16 PF07760 DUF1616: Protein of u 22.1 5.5E+02 0.012 24.0 8.3 33 205-237 128-160 (287)
17 cd03392 PAP2_like_2 PAP2_like_ 21.2 1.2E+02 0.0026 25.6 3.4 24 151-174 140-163 (182)
18 PF13937 DUF4212: Domain of un 20.0 3E+02 0.0064 22.0 5.2 60 109-173 13-73 (81)
No 1
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=100.00 E-value=5.4e-76 Score=498.93 Aligned_cols=144 Identities=55% Similarity=1.000 Sum_probs=140.8
Q ss_pred CCCCCCCCchHHHHHhhcCCCcccCCCChHHHHHHHHHHHHHhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHH
Q 040797 78 CPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTL 157 (280)
Q Consensus 78 CPVP~EQrPvNEY~eLk~SwfFsW~tl~~~~Y~~rL~~~w~~~~~li~~PIAa~~Sf~p~~~pl~~il~a~~ga~~lv~L 157 (280)
||||.||||+|||+|||+||||+||+++..+|.+||+++|. +++++++|||+ +||+++++|+|++++|++||+++++|
T Consensus 1 CPVP~eQqP~nEy~~L~~S~~FsW~~~~~~~y~~~l~~~w~-~~~~~~~pia~-~S~~~~~~~~~~~l~~~~ga~~~~~l 78 (144)
T PF06799_consen 1 CPVPPEQQPLNEYQELKESWFFSWPTLELKSYLKRLLWIWL-ISFLVFGPIAA-GSFPPEKDPLEFILSGAVGALLLLLL 78 (144)
T ss_pred CccCccccCHHHHHHHhhCcCccCccCChHHHHHHHHHHHH-HHHHHHHhhhe-eecCccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 88889999999 99999999999999999999999999
Q ss_pred HHHHHHhChHHHHhhhccCceeccccCccCCcccccCHHHHhhhhhccccchhhHHHHHHHHHHHH
Q 040797 158 AVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITL 223 (280)
Q Consensus 158 vlLRLYLGWsYV~dRLlSatVeYEESGWYDGQvWvKP~EvLaRDRLI~sYqVkPIL~RLk~Tl~~l 223 (280)
+++||||||+||+|||+|||||||||||||||+|+||+|+|+|||||++|||||||+|||+|+.++
T Consensus 79 ~llRlyLGW~YV~~RL~s~tV~YEESGWYDGQ~W~Kp~e~l~rDrLi~~yqVkPiL~RL~~tl~~l 144 (144)
T PF06799_consen 79 VLLRLYLGWSYVGDRLLSATVEYEESGWYDGQVWVKPPEVLARDRLIGSYQVKPILSRLKQTLSIL 144 (144)
T ss_pred HHHHHHhChHHHHhhhccCcccccccCccCCccccCCHHHHHHHHHHhhhhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999753
No 2
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.72 E-value=27 Score=33.62 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhccCceec
Q 040797 139 EPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEY 180 (280)
Q Consensus 139 ~pl~~il~a~~ga~~lv~LvlLRLYLGWsYV~dRLlSatVeY 180 (280)
.-....+.+++.+.++++|+.+=+||=|+|=|+|=++....|
T Consensus 252 ~~~~t~I~aSiiaIliIVLIMvIIYLILRYRRKKKmkKKlQY 293 (299)
T PF02009_consen 252 ASLTTAIIASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQY 293 (299)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334566777778888888999999999999998877776665
No 3
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=34.45 E-value=3.6e+02 Score=27.29 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Q 040797 144 ILGAVSSGVIVVTLAVVRMYLGWA 167 (280)
Q Consensus 144 il~a~~ga~~lv~LvlLRLYLGWs 167 (280)
.+...+.++++++.++.|.|-||.
T Consensus 57 ~li~~~~~l~~~t~~~grvwCGw~ 80 (434)
T TIGR02745 57 LLIIAALGLFFITTLAGRVWCGYA 80 (434)
T ss_pred HHHHHHHHHHHHHHHHHHeeecCc
Confidence 445566677777788899999995
No 4
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=33.62 E-value=47 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhChHHHHhhhc
Q 040797 150 SGVIVVTLAVVRMYLGWAYVGNRLL 174 (280)
Q Consensus 150 ga~~lv~LvlLRLYLGWsYV~dRLl 174 (280)
...+.....+.|+|+|+.|+.|=+.
T Consensus 84 ~~~~~~~v~~srv~~g~H~~~Dvi~ 108 (129)
T PF01569_consen 84 AIVLAFLVALSRVYLGAHFFSDVIA 108 (129)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred HHHHHHHhhcCEEEcCeEehHHHHH
Confidence 3444556667999999999988543
No 5
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=30.98 E-value=15 Score=28.72 Aligned_cols=7 Identities=57% Similarity=1.237 Sum_probs=6.0
Q ss_pred ccCccCC
Q 040797 182 ETGWYDG 188 (280)
Q Consensus 182 ESGWYDG 188 (280)
|+||+|.
T Consensus 29 e~GW~d~ 35 (86)
T PF10163_consen 29 ECGWRDE 35 (86)
T ss_dssp HTTHHHH
T ss_pred HCChHHH
Confidence 8999984
No 6
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=30.61 E-value=2e+02 Score=23.16 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=36.7
Q ss_pred HHHHHHhhhhhhcccccc-------------cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 040797 114 FVTGASFALFVGLPVAWF-------------GAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVG 170 (280)
Q Consensus 114 ~~~w~~~~~li~~PIAa~-------------~Sf~p~~~pl~~il~a~~ga~~lv~LvlLRLYLGWsYV~ 170 (280)
+++|| ..+++.+|+..= .|=+.+.++.|.++-..+.|.++-+++..=.+-||-=+.
T Consensus 11 ~viWw-~~lF~vLP~gvrtq~E~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~~~~g~i~~~ 79 (85)
T PF07330_consen 11 FVIWW-IVLFAVLPFGVRTQDEAGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLIIVSGWISLD 79 (85)
T ss_pred HHHHH-HHHHHHccCCccccCcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 45666 777888888641 133444566777777777777777777777777775443
No 7
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=29.75 E-value=4.5e+02 Score=24.25 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHhhcCCCcccCCCChHHHHHHHHHHHHHhhhhhhcccccccccCCCCchHHHHHHH
Q 040797 68 SNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGA 147 (280)
Q Consensus 68 s~~~~~~~~~CPVP~EQrPvNEY~eLk~SwfFsW~tl~~~~Y~~rL~~~w~~~~~li~~PIAa~~Sf~p~~~pl~~il~a 147 (280)
.|+. -.+...|.+.++.. +|++.-|+..+|.+. ...+|.-|+...-.++..++..-.++ -....++.+.
T Consensus 32 dWP~-C~G~~~P~~~~~w~-~~~~~y~~~~~~~~~--~~~E~~HR~~~~~~gl~~l~~~~~~~-~~~~~~~~~~------ 100 (302)
T PF02628_consen 32 DWPL-CFGQLPPLSESEWA-AEFEKYKQTPFFKFH--TWIEWGHRLLAGLVGLLILALAVWAW-RKRRIRRRLR------ 100 (302)
T ss_pred CCcC-ccCcCCCCCHHHHH-HHHHhCcCCccchhh--hhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCcchH------
Confidence 4552 22334454444433 788888888877664 45688899875433222222222222 1112222222
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHhhh
Q 040797 148 VSSGVIVVTLAVVRMYLGWAYVGNRL 173 (280)
Q Consensus 148 ~~ga~~lv~LvlLRLYLGWsYV~dRL 173 (280)
..+.+++.++++.-.+||.=|...|
T Consensus 101 -~~~~~~~~l~~~Q~~lG~~~V~~~l 125 (302)
T PF02628_consen 101 -WLALLALVLVILQGLLGAWTVLSGL 125 (302)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2234466777889999999998877
No 8
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=29.74 E-value=50 Score=27.52 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=30.8
Q ss_pred hhhhhccccchhhHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 040797 199 ARDRLLGSFSVKPVLSR-LKYTLITLGASLFVCALLLIN 236 (280)
Q Consensus 199 aRDRLI~sYqVkPIL~R-Lk~Tl~~la~ll~~~~ll~~~ 236 (280)
++|++...|+.+|-=++ +.+.+..+++++++.+++++.
T Consensus 14 q~~~i~~~~~~~~~~~~~~~~~l~~lGall~~~gii~fv 52 (145)
T PF09925_consen 14 QAEAILAFYGERPSRSSWLARILLYLGALLLGLGIILFV 52 (145)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888998877776 888999999888888777665
No 9
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=27.90 E-value=1.4e+02 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=19.9
Q ss_pred HhChHHHHhhhccCceeccccCccCCc
Q 040797 163 YLGWAYVGNRLLSATVEYEETGWYDGQ 189 (280)
Q Consensus 163 YLGWsYV~dRLlSatVeYEESGWYDGQ 189 (280)
+.+|.|+.+|-......|+=+=.++|+
T Consensus 141 ~~~~~~i~~~~~~~~~~~~v~i~~~~~ 167 (293)
T PF03419_consen 141 KRLWKYIKRRRIKKDYLYPVTIEIGGK 167 (293)
T ss_pred HHHHHHHHHHHhcCcEEEEEEEEECCE
Confidence 568999999888877777665555554
No 10
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=27.50 E-value=12 Score=33.44 Aligned_cols=16 Identities=50% Similarity=0.796 Sum_probs=13.5
Q ss_pred CccCCcccccCHHHHh
Q 040797 184 GWYDGQIWVKTAEVLA 199 (280)
Q Consensus 184 GWYDGQvWvKP~EvLa 199 (280)
|=||-|+|+|..|-..
T Consensus 15 g~YD~q~WEksveq~~ 30 (159)
T PF12129_consen 15 GAYDQQIWEKSVEQRE 30 (159)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6699999999988654
No 11
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=26.73 E-value=76 Score=23.52 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHhhh
Q 040797 147 AVSSGVIVVTLAVVRMYLGWAYVGNRL 173 (280)
Q Consensus 147 a~~ga~~lv~LvlLRLYLGWsYV~dRL 173 (280)
......+......-|+|+|+.|..|=.
T Consensus 82 ~~~~~~~~~~~~~sri~~g~H~~~Dv~ 108 (122)
T cd01610 82 GLLLLLLALLVGLSRVYLGVHYPSDVL 108 (122)
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 334455566666799999999998843
No 12
>PRK11017 codB cytosine permease; Provisional
Probab=24.81 E-value=1.1e+02 Score=29.52 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=5.9
Q ss_pred CCCCCCC
Q 040797 79 PVPADQQ 85 (280)
Q Consensus 79 PVP~EQr 85 (280)
|||.|+|
T Consensus 3 pvp~~~r 9 (404)
T PRK11017 3 PVPQSAR 9 (404)
T ss_pred CCCHHHh
Confidence 7888888
No 13
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=23.73 E-value=50 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=22.1
Q ss_pred ccccCccCCcccccCHHHHhhhhhccccchhhHHHHH
Q 040797 180 YEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRL 216 (280)
Q Consensus 180 YEESGWYDGQvWvKP~EvLaRDRLI~sYqVkPIL~RL 216 (280)
-+.+|||.|..+-.+. ..+..-=.+|.|-|-..+-
T Consensus 8 L~~aGW~~~R~idi~~--~~~~~~~~g~~~~paa~~f 42 (142)
T PF14433_consen 8 LRAAGWYEGRKIDISL--WEKILEEEGYPVFPAAVEF 42 (142)
T ss_pred HHHcCCCCCcccCHHH--HHHHHHhcCCCCCHHHHHH
Confidence 3678999999874333 2222222299999976653
No 14
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=22.84 E-value=89 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=23.3
Q ss_pred hhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhcc
Q 040797 121 ALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLS 175 (280)
Q Consensus 121 ~~li~~PIAa~~Sf~p~~~pl~~il~a~~ga~~lv~LvlLRLYLGWsYV~dRLlS 175 (280)
..+++.|+.+ +-.+....+.. .+.+.+.=+++-|+|+.+-+..
T Consensus 17 ~l~~~~P~~a---~~~~~~~~~a~---------~l~v~~s~~a~~wn~ifN~~FD 59 (67)
T PF05232_consen 17 ALLISVPLIA---WWLGISLWQAG---------ALDVGLSLFAMVWNYIFNWLFD 59 (67)
T ss_pred HHHHHHHHHH---HHHCCCHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788776 33444444332 2222333345668888876543
No 15
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=22.35 E-value=1.1e+02 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=16.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 040797 137 DSEPLERILGAVSSGVIVVTLAV 159 (280)
Q Consensus 137 ~~~pl~~il~a~~ga~~lv~Lvl 159 (280)
+.+|+++++.|.+.+.+++..++
T Consensus 27 ~~~p~~~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 27 QGSPVHFIIVGIILAALFVAGLV 49 (56)
T ss_pred cCCCchHHHHHHHHHHHHHHHHH
Confidence 34789999999887766665544
No 16
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=22.12 E-value=5.5e+02 Score=23.95 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=16.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 040797 205 GSFSVKPVLSRLKYTLITLGASLFVCALLLINL 237 (280)
Q Consensus 205 ~sYqVkPIL~RLk~Tl~~la~ll~~~~ll~~~i 237 (280)
++|.-..=.++.-..+..++++++++.+.+...
T Consensus 128 ~~~~~~~~~~~~l~viLvi~il~~v~~~~~~~~ 160 (287)
T PF07760_consen 128 GSYLSNSRSDNVLNVILVISILAAVGSVGYAVV 160 (287)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHheeEEe
Confidence 566555555555544444444444444444443
No 17
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=21.18 E-value=1.2e+02 Score=25.56 Aligned_cols=24 Identities=25% Similarity=0.625 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhChHHHHhhhc
Q 040797 151 GVIVVTLAVVRMYLGWAYVGNRLL 174 (280)
Q Consensus 151 a~~lv~LvlLRLYLGWsYV~dRLl 174 (280)
....+.....|+|+|..|..|=+.
T Consensus 140 ~~~~~~v~~sRv~lg~H~~sDvl~ 163 (182)
T cd03392 140 AILILLVGLSRLYLGVHYPSDVLA 163 (182)
T ss_pred HHHHHHHHHHHHHhcccchhHHHH
Confidence 445555667999999999988654
No 18
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=20.01 E-value=3e+02 Score=21.97 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhhhcccc-cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhh
Q 040797 109 YCSRLFVTGASFALFVGLPVA-WFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRL 173 (280)
Q Consensus 109 Y~~rL~~~w~~~~~li~~PIA-a~~Sf~p~~~pl~~il~a~~ga~~lv~LvlLRLYLGWsYV~dRL 173 (280)
+...++.+|..+++.++.-.| .+..+....-|+.|-+++-.+-.+.++|+. . .++..|||
T Consensus 13 l~~~lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~--~---Ya~~mnrl 73 (81)
T PF13937_consen 13 LIAILLAIWFVVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFVILIF--V---YAWRMNRL 73 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHHHHHH--H---HHHHHHHH
Confidence 344555666644443311111 112344566788898777543333333332 2 34455554
Done!