Query 040797
Match_columns 280
No_of_seqs 90 out of 92
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 19:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9j_B Integrin beta-3; transm 75.8 5.1 0.00017 27.3 4.8 34 139-172 7-40 (43)
2 2knc_B Integrin beta-3; transm 72.0 4.3 0.00015 30.8 4.1 47 142-188 11-59 (79)
3 2k1a_A Integrin alpha-IIB; sin 45.9 35 0.0012 23.3 4.5 32 135-166 4-36 (42)
4 2l8s_A Integrin alpha-1; trans 39.8 35 0.0012 24.6 4.0 31 136-166 4-35 (54)
5 2knc_A Integrin alpha-IIB; tra 31.0 66 0.0023 23.1 4.2 31 137-167 8-39 (54)
6 2dk7_A Transcription elongatio 29.3 9.5 0.00033 29.1 -0.4 16 190-205 43-61 (73)
7 3um7_A Potassium channel subfa 27.7 3.6E+02 0.012 24.7 11.2 24 122-146 124-147 (309)
8 2jln_A MHP1; hydantoin, transp 26.3 1E+02 0.0035 29.1 5.9 12 74-85 14-25 (501)
9 1je3_A EC005, hypothetical 8.6 23.0 25 0.00087 27.0 0.9 36 36-82 6-41 (97)
10 2cfu_A SDSA1; SDS-hydrolase, l 23.0 49 0.0017 32.7 3.2 40 181-220 418-460 (658)
No 1
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=75.77 E-value=5.1 Score=27.34 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhh
Q 040797 139 EPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNR 172 (280)
Q Consensus 139 ~pl~~il~a~~ga~~lv~LvlLRLYLGWsYV~dR 172 (280)
-..-.++.+.+||.+++.++++-+|--..+++||
T Consensus 7 ~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 7 PDILVVLLSVMGAILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeehHHHHHHHHHHHHHHHHHHHHHHHheehh
Confidence 3445677888899898999888888888899887
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=72.01 E-value=4.3 Score=30.80 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhccCcee--ccccCccCC
Q 040797 142 ERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVE--YEETGWYDG 188 (280)
Q Consensus 142 ~~il~a~~ga~~lv~LvlLRLYLGWsYV~dRLlSatVe--YEESGWYDG 188 (280)
-.++.+.+||++++.|+++-+|--..+++||=--+.-| ...+.|.++
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~ 59 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTA 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 46678889999999999988888889999986554432 223445554
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=45.87 E-value=35 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=24.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH-hCh
Q 040797 135 GPDSEPLERILGAVSSGVIVVTLAVVRMY-LGW 166 (280)
Q Consensus 135 ~p~~~pl~~il~a~~ga~~lv~LvlLRLY-LGW 166 (280)
.....|+-.++.|+++++++++++..=|| .|+
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL~li~~~LwK~GF 36 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLLTILVLAMWKVGF 36 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcCCcchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34456888899999999999888877776 443
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.78 E-value=35 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=24.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH-hCh
Q 040797 136 PDSEPLERILGAVSSGVIVVTLAVVRMY-LGW 166 (280)
Q Consensus 136 p~~~pl~~il~a~~ga~~lv~LvlLRLY-LGW 166 (280)
+...|+-.++.|++|++++++|++.=|| .|+
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4456777889999999999888887776 454
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.03 E-value=66 Score=23.08 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH-hChH
Q 040797 137 DSEPLERILGAVSSGVIVVTLAVVRMY-LGWA 167 (280)
Q Consensus 137 ~~~pl~~il~a~~ga~~lv~LvlLRLY-LGWs 167 (280)
..-|+-.++.|++|++++++|++.=|| .|+.
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346778889999999999888887776 4643
No 6
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.32 E-value=9.5 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.850 Sum_probs=13.0
Q ss_pred ccccCHHHHhh---hhhcc
Q 040797 190 IWVKTAEVLAR---DRLLG 205 (280)
Q Consensus 190 vWvKP~EvLaR---DRLI~ 205 (280)
+|+||.|+..+ ||+|.
T Consensus 43 ~WekP~eLk~~~e~dr~l~ 61 (73)
T 2dk7_A 43 MWDRPDDLIGRADVDKIIQ 61 (73)
T ss_dssp CSSCCTTTTTCSHHHHHHH
T ss_pred eccCChHhcCHHHHHHHHh
Confidence 69999999987 56665
No 7
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=27.71 E-value=3.6e+02 Score=24.69 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=16.6
Q ss_pred hhhhcccccccccCCCCchHHHHHH
Q 040797 122 LFVGLPVAWFGAVGPDSEPLERILG 146 (280)
Q Consensus 122 ~li~~PIAa~~Sf~p~~~pl~~il~ 146 (280)
......|.. |...|....-|.+..
T Consensus 124 ~~t~tTvGY-Gdi~P~T~~gk~~~i 147 (309)
T 3um7_A 124 GTIITTIGY-GNVALRTDAGRLFCI 147 (309)
T ss_dssp HHHHTSCCC-CSSCCCSHHHHHHHH
T ss_pred heeeeeccc-CCCCCCCccchhHHH
Confidence 334466775 899999888876543
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=26.28 E-value=1e+02 Score=29.10 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCC
Q 040797 74 PETECPVPADQQ 85 (280)
Q Consensus 74 ~~~~CPVP~EQr 85 (280)
++..-|||.|+|
T Consensus 14 ~~~i~pvp~~~R 25 (501)
T 2jln_A 14 NPSNAPTRYAER 25 (501)
T ss_dssp CSTTSCCCGGGC
T ss_pred cCCCCCCChhhC
Confidence 455679999888
No 9
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=23.00 E-value=25 Score=27.02 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=24.1
Q ss_pred eeeccccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 040797 36 VRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSSSNTPPLPETECPVPA 82 (280)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~CPVP~ 82 (280)
+|||+.+-|.|+.+-+++... . -.-|+-+..||.|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~m~~---------~--~~LD~rGl~CP~Pv 41 (97)
T 1je3_A 6 HHHHHSSGLVPRGSHMKNIVP---------D--YRLDMVGEPCPYPA 41 (97)
T ss_dssp CCCCSCCCCCCCSSCSSCCCE---------E--EEECSBCCSSSSST
T ss_pred ccccccccccccccccccCCc---------C--eEEeCCCCCCCHHH
Confidence 577788889988886663310 0 11256889999996
No 10
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.00 E-value=49 Score=32.70 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=30.5
Q ss_pred cccCccCCcc---cccCHHHHhhhhhccccchhhHHHHHHHHH
Q 040797 181 EETGWYDGQI---WVKTAEVLARDRLLGSFSVKPVLSRLKYTL 220 (280)
Q Consensus 181 EESGWYDGQv---WvKP~EvLaRDRLI~sYqVkPIL~RLk~Tl 220 (280)
|..|||||.- |.=||+..++.-+=.-=-..+|+.+-|..+
T Consensus 418 ~y~Gw~dgnp~~l~~l~p~~~a~~~v~~~gg~~~~~~~a~~~~ 460 (658)
T 2cfu_A 418 RYLGYYDGNPATLDPLSPEDSAGRYVEYMGGAERLLEQARASY 460 (658)
T ss_dssp HHHCSCCSCGGGTSCCCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCcccCCcccccCCChHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5789999988 988999888865433334678888888754
Done!