Query 040797
Match_columns 280
No_of_seqs 90 out of 92
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 19:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040797.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040797hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c9wa2 d.93.1.1 (A:32-134) Su 27.7 3.5 0.00026 29.1 -1.3 41 171-211 3-43 (103)
2 d1jdqa_ d.68.3.3 (A:) Hypothet 23.3 8.2 0.0006 27.8 0.0 36 36-82 5-40 (98)
3 d1opka2 d.93.1.1 (A:140-240) A 13.6 15 0.0011 25.7 -0.6 32 180-211 2-33 (101)
4 d1niga_ a.25.2.1 (A:) Hypothet 12.0 32 0.0023 27.1 1.0 15 168-187 71-85 (148)
5 d1qada_ d.93.1.1 (A:) Phosphat 11.4 16 0.0012 25.7 -0.9 33 180-212 6-38 (107)
6 d1fu6a_ d.93.1.1 (A:) Phosphat 10.6 36 0.0026 23.7 0.7 37 175-211 3-39 (111)
7 d1mhna_ b.34.9.1 (A:) Survival 9.0 27 0.002 22.7 -0.5 13 179-191 13-26 (59)
8 d1r6fa_ e.46.1.1 (A:) Low calc 8.5 30 0.0022 30.1 -0.5 10 182-191 59-68 (295)
9 d1s58a_ b.121.5.2 (A:) Parvovi 8.4 34 0.0025 31.9 -0.2 30 178-207 396-429 (536)
10 d1c8da_ b.121.5.2 (A:) Parvovi 8.3 44 0.0032 31.2 0.5 13 185-197 428-440 (548)
No 1
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.75 E-value=3.5 Score=29.09 Aligned_cols=41 Identities=32% Similarity=0.512 Sum_probs=32.6
Q ss_pred hhhccCceeccccCccCCcccccCHHHHhhhhhccccchhh
Q 040797 171 NRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKP 211 (280)
Q Consensus 171 dRLlSatVeYEESGWYDGQvWvKP~EvLaRDRLI~sYqVkP 211 (280)
.|+.++..+-|+.+||=|.+=.+-.|-+-++.=-|+|=||+
T Consensus 3 ~~~~~~~~~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~ 43 (103)
T d2c9wa2 3 ARLAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRD 43 (103)
T ss_dssp HHHHHHHHHHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEE
T ss_pred chHHHHHHHHhhCCCcCCCCCHHHHHHHhcCCCCCceEEec
Confidence 36667777889999999998777777777777778887775
No 2
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}
Probab=23.28 E-value=8.2 Score=27.83 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=21.6
Q ss_pred eeeccccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 040797 36 VRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSSSNTPPLPETECPVPA 82 (280)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~CPVP~ 82 (280)
.||+|.+.|++|--.-.++ .-.-+-|+-+..||.|.
T Consensus 5 ~~~~~~s~~~~~~~~m~~~-----------~~~~~LD~rG~~CP~Pl 40 (98)
T d1jdqa_ 5 HHHHHSSGLVPRGSHMAKY-----------QVTKTLDVRGEVCPVPD 40 (98)
T ss_dssp SSCCSSCSCCCCCCSSCCC-----------CCCEEEECSSCCSSHHH
T ss_pred ccccccccccccccccccC-----------cCCeeEECCCCcCCHHH
Confidence 4677777887775544333 11112356788999874
No 3
>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.63 E-value=15 Score=25.69 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=25.7
Q ss_pred ccccCccCCcccccCHHHHhhhhhccccchhh
Q 040797 180 YEETGWYDGQIWVKTAEVLARDRLLGSFSVKP 211 (280)
Q Consensus 180 YEESGWYDGQvWvKP~EvLaRDRLI~sYqVkP 211 (280)
-|+..||-|.+=.+-.|.+-++.=.|+|=||+
T Consensus 2 Le~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~ 33 (101)
T d1opka2 2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRE 33 (101)
T ss_dssp GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEE
T ss_pred cccCcccCCCCCHHHHHHHhcCCCCCeEEEEe
Confidence 37889999999888888888877778887763
No 4
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=12.03 E-value=32 Score=27.13 Aligned_cols=15 Identities=40% Similarity=0.990 Sum_probs=11.7
Q ss_pred HHHhhhccCceeccccCccC
Q 040797 168 YVGNRLLSATVEYEETGWYD 187 (280)
Q Consensus 168 YV~dRLlSatVeYEESGWYD 187 (280)
.+.+||. +||..|||
T Consensus 71 ~qeKrLn-----~teE~W~D 85 (148)
T d1niga_ 71 FQEKRLN-----FTEEDWYD 85 (148)
T ss_dssp HHHHHHH-----HCCCCCCC
T ss_pred HHHHhcC-----CchHHHHh
Confidence 4566664 89999999
No 5
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.45 E-value=16 Score=25.70 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=28.7
Q ss_pred ccccCccCCcccccCHHHHhhhhhccccchhhH
Q 040797 180 YEETGWYDGQIWVKTAEVLARDRLLGSFSVKPV 212 (280)
Q Consensus 180 YEESGWYDGQvWvKP~EvLaRDRLI~sYqVkPI 212 (280)
+|+..||-|.+=.+-.|.+-|++=-|+|=||+=
T Consensus 6 ~~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S 38 (107)
T d1qada_ 6 HDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES 38 (107)
T ss_dssp GSGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC
T ss_pred cCCCcccCCCCCHHHHHHHHcCCCCCcEEEEec
Confidence 789999999998888888888888899999874
No 6
>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.58 E-value=36 Score=23.72 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=28.8
Q ss_pred cCceeccccCccCCcccccCHHHHhhhhhccccchhh
Q 040797 175 SATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKP 211 (280)
Q Consensus 175 SatVeYEESGWYDGQvWvKP~EvLaRDRLI~sYqVkP 211 (280)
+...+.|+..||-|.+=.+-.|-+-++.=-|+|=||.
T Consensus 3 ~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~ 39 (111)
T d1fu6a_ 3 NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRD 39 (111)
T ss_dssp CCCCCCSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBS
T ss_pred CCCCccCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEe
Confidence 5567889999999998777777777765578887773
No 7
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=27 Score=22.67 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=9.8
Q ss_pred eccccC-ccCCccc
Q 040797 179 EYEETG-WYDGQIW 191 (280)
Q Consensus 179 eYEESG-WYDGQvW 191 (280)
.|.|.| ||.+++=
T Consensus 13 ~~s~Dg~wYRA~I~ 26 (59)
T d1mhna_ 13 IWSEDGCIYPATIA 26 (59)
T ss_dssp ECTTTSCEEEEEEE
T ss_pred EECCCCCEEEEEEE
Confidence 477766 9999874
No 8
>d1r6fa_ e.46.1.1 (A:) Low calcium response locus protein V, LcrV {Yersinia pestis [TaxId: 632]}
Probab=8.49 E-value=30 Score=30.13 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=7.3
Q ss_pred ccCccCCccc
Q 040797 182 ETGWYDGQIW 191 (280)
Q Consensus 182 ESGWYDGQvW 191 (280)
+-||||||+=
T Consensus 59 ~gg~~~~Q~~ 68 (295)
T d1r6fa_ 59 KGGHYDNQLQ 68 (295)
T ss_dssp CCCC-CHHHH
T ss_pred cCcccHHHHH
Confidence 5799999963
No 9
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Human parvovirus B19 [TaxId: 10798]}
Probab=8.35 E-value=34 Score=31.87 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=20.6
Q ss_pred eeccccCccCCcccccCHH----HHhhhhhcccc
Q 040797 178 VEYEETGWYDGQIWVKTAE----VLARDRLLGSF 207 (280)
Q Consensus 178 VeYEESGWYDGQvWvKP~E----vLaRDRLI~sY 207 (280)
|-=+..--|+||+|.|=|+ .-.+|-++|++
T Consensus 396 VW~~rpiy~qgqIW~KiP~tD~~f~ps~p~lGgf 429 (536)
T d1s58a_ 396 VWNRRALHYESQLWSKIPNLDDSFKTQFAALGGW 429 (536)
T ss_dssp CCCCCCCCSSCBCCBCCCSCSCCSSTTBCTTSSB
T ss_pred ccCCCCcccCCCceecccCCCCCcCCCCCcCCcc
Confidence 3345566799999999554 45666666665
No 10
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Canine parvovirus [TaxId: 10788]}
Probab=8.25 E-value=44 Score=31.20 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=10.6
Q ss_pred ccCCcccccCHHH
Q 040797 185 WYDGQIWVKTAEV 197 (280)
Q Consensus 185 WYDGQvWvKP~Ev 197 (280)
-|+||+|.|=|..
T Consensus 428 y~~gqIW~KiP~t 440 (548)
T d1c8da_ 428 YPNGQIWDKEFDT 440 (548)
T ss_dssp ETTCCCEECCCCS
T ss_pred ccCCCceecccCC
Confidence 4789999997764
Done!