Query 040800
Match_columns 223
No_of_seqs 122 out of 1189
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 3E-33 6.5E-38 258.0 19.4 186 1-190 421-616 (617)
2 TIGR00956 3a01205 Pleiotropic 100.0 3.7E-32 8.1E-37 268.3 21.8 188 1-191 481-698 (1394)
3 PLN03140 ABC transporter G fam 100.0 6.7E-32 1.5E-36 266.3 17.5 188 1-191 1276-1470(1470)
4 PLN03211 ABC transporter G-25; 100.0 1.4E-31 3.1E-36 247.7 16.8 181 1-187 467-658 (659)
5 PLN03140 ABC transporter G fam 100.0 3.9E-31 8.4E-36 260.9 19.2 185 1-188 598-790 (1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-29 3.3E-34 249.9 16.0 181 2-187 1159-1390(1394)
7 KOG0061 Transporter, ABC super 100.0 4.2E-29 9E-34 229.4 16.3 187 1-191 418-612 (613)
8 KOG0065 Pleiotropic drug resis 100.0 2.1E-28 4.6E-33 232.0 15.7 188 1-191 520-734 (1391)
9 KOG0065 Pleiotropic drug resis 99.9 1.2E-24 2.6E-29 206.7 11.8 188 1-191 1184-1387(1391)
10 TIGR03062 pip_yhgE_Cterm YhgE/ 99.7 3.2E-15 6.9E-20 120.4 16.0 151 12-188 58-208 (208)
11 TIGR00025 Mtu_efflux ABC trans 99.6 4.6E-14 1E-18 115.6 14.1 159 3-184 60-229 (232)
12 PF01061 ABC2_membrane: ABC-2 99.6 8.1E-17 1.8E-21 128.5 -2.4 129 2-134 82-210 (210)
13 TIGR01291 nodJ ABC-2 type tran 99.6 1.9E-13 4.2E-18 113.5 15.4 161 3-187 83-251 (253)
14 TIGR01247 drrB daunorubicin re 99.5 2E-13 4.4E-18 111.9 13.5 147 12-181 88-234 (236)
15 PRK15066 inner membrane transp 99.3 7.3E-11 1.6E-15 98.2 16.4 155 11-189 101-255 (257)
16 TIGR03861 phenyl_ABC_PedC alco 99.3 6.1E-11 1.3E-15 98.3 15.3 148 12-185 100-250 (253)
17 TIGR01248 drrC daunorubicin re 99.3 7.7E-12 1.7E-16 96.1 9.0 124 3-131 13-147 (152)
18 COG0842 ABC-type multidrug tra 99.3 2.8E-10 6.1E-15 94.4 15.5 163 4-188 113-284 (286)
19 PF12698 ABC2_membrane_3: ABC- 98.7 2.5E-09 5.4E-14 90.7 0.0 150 3-180 183-343 (344)
20 TIGR03518 ABC_perm_GldF glidin 98.7 9.5E-07 2.1E-11 72.8 14.0 152 2-185 73-239 (240)
21 COG1682 TagG ABC-type polysacc 98.4 2.5E-05 5.4E-10 65.2 16.4 153 12-189 106-258 (263)
22 PF06422 PDR_CDR: CDR ABC tran 98.2 2.2E-06 4.7E-11 61.4 5.4 48 144-192 32-79 (103)
23 PRK15176 Vi polysaccharide exp 98.1 0.00011 2.5E-09 61.4 14.2 110 57-189 153-262 (264)
24 PF12679 ABC2_membrane_2: ABC- 98.1 0.00015 3.2E-09 60.3 14.2 165 3-186 91-275 (277)
25 COG1511 Predicted membrane pro 97.7 0.00086 1.9E-08 64.3 14.0 158 6-189 610-768 (780)
26 COG1277 NosY ABC-type transpor 97.3 0.022 4.7E-07 47.5 16.0 172 2-187 83-276 (278)
27 PF08370 PDR_assoc: Plant PDR 97.2 0.00067 1.5E-08 44.1 4.6 46 144-190 12-58 (65)
28 PF12051 DUF3533: Protein of u 97.2 0.0095 2.1E-07 52.5 13.1 137 12-175 240-380 (382)
29 PF03379 CcmB: CcmB protein; 96.5 0.014 2.9E-07 47.4 7.5 91 2-94 68-166 (215)
30 COG4587 ABC-type uncharacteriz 96.2 0.12 2.7E-06 42.4 11.4 163 3-187 85-260 (268)
31 PF06182 ABC2_membrane_6: ABC- 96.2 0.39 8.5E-06 39.0 14.7 151 12-188 72-223 (229)
32 TIGR01257 rim_protein retinal- 96.0 0.39 8.4E-06 51.1 16.5 163 12-182 692-857 (2272)
33 COG4200 Uncharacterized protei 95.5 1.1 2.3E-05 36.6 14.3 143 5-187 78-233 (239)
34 TIGR03733 lanti_perm_MutG lant 95.4 1.3 2.7E-05 36.6 15.1 77 3-79 69-158 (248)
35 TIGR01190 ccmB heme exporter p 95.0 0.13 2.7E-06 41.6 7.3 88 2-91 65-160 (211)
36 COG1668 NatB ABC-type Na+ effl 94.3 1.8 3.8E-05 38.6 13.7 77 12-88 228-316 (407)
37 TIGR01257 rim_protein retinal- 93.8 1.8 3.9E-05 46.3 14.4 77 12-89 1719-1797(2272)
38 PF12730 ABC2_membrane_4: ABC- 92.5 0.81 1.7E-05 35.8 7.9 85 2-87 70-170 (232)
39 TIGR03732 lanti_perm_MutE lant 92.3 5.4 0.00012 32.7 14.1 114 3-130 64-189 (241)
40 COG2386 CcmB ABC-type transpor 91.0 0.9 2E-05 36.4 6.4 88 2-91 71-166 (221)
41 PF01102 Glycophorin_A: Glycop 86.2 1.7 3.6E-05 32.0 4.6 27 161-187 67-93 (122)
42 KOG4112 Signal peptidase subun 71.8 9 0.00019 26.6 4.1 17 106-126 67-83 (101)
43 PF15050 SCIMP: SCIMP protein 65.2 9.4 0.0002 27.8 3.3 10 193-202 38-47 (133)
44 PF12273 RCR: Chitin synthesis 64.3 7.5 0.00016 28.7 2.9 10 167-176 7-16 (130)
45 PF02009 Rifin_STEVOR: Rifin/s 63.8 7.6 0.00017 33.1 3.1 25 167-191 263-287 (299)
46 TIGR01477 RIFIN variant surfac 61.8 7.7 0.00017 33.7 2.8 30 161-191 312-341 (353)
47 PTZ00046 rifin; Provisional 61.8 7.7 0.00017 33.8 2.8 30 161-191 317-346 (358)
48 KOG0059 Lipid exporter ABCA1 a 57.9 70 0.0015 31.7 9.0 85 7-94 333-417 (885)
49 COG3559 TnrB3 Putative exporte 48.0 2.2E+02 0.0047 25.9 13.2 85 66-187 448-533 (536)
50 PF04277 OAD_gamma: Oxaloaceta 47.0 48 0.001 21.8 4.4 12 168-179 9-20 (79)
51 PF11446 DUF2897: Protein of u 46.1 45 0.00098 20.8 3.7 21 168-188 8-28 (55)
52 TIGR00383 corA magnesium Mg(2+ 44.5 62 0.0014 27.4 5.7 26 84-109 261-287 (318)
53 PF05454 DAG1: Dystroglycan (D 42.9 8.1 0.00017 32.8 0.0 26 167-192 154-179 (290)
54 PF12273 RCR: Chitin synthesis 41.5 19 0.00042 26.4 1.9 17 168-184 4-21 (130)
55 COG3559 TnrB3 Putative exporte 39.5 3E+02 0.0065 25.1 10.7 68 51-126 164-231 (536)
56 PF06305 DUF1049: Protein of u 38.9 19 0.00041 23.0 1.3 31 161-191 18-48 (68)
57 PF15048 OSTbeta: Organic solu 36.4 58 0.0013 24.0 3.6 8 178-185 49-56 (125)
58 COG4393 Predicted membrane pro 34.1 1.4E+02 0.0031 25.9 6.0 80 44-125 20-101 (405)
59 PF01534 Frizzled: Frizzled/Sm 32.6 49 0.0011 28.6 3.2 69 116-191 142-213 (328)
60 PF10805 DUF2730: Protein of u 31.6 32 0.00069 24.5 1.6 29 193-222 37-65 (106)
61 PF05545 FixQ: Cbb3-type cytoc 31.5 83 0.0018 18.7 3.3 24 163-186 10-33 (49)
62 PF11189 DUF2973: Protein of u 31.5 75 0.0016 20.5 3.2 14 170-183 5-18 (65)
63 PRK10697 DNA-binding transcrip 31.1 1.6E+02 0.0036 21.4 5.2 41 174-215 50-90 (118)
64 TIGR01195 oadG_fam sodium pump 30.1 82 0.0018 21.3 3.3 14 167-180 11-24 (82)
65 PF15102 TMEM154: TMEM154 prot 27.8 32 0.0007 26.0 1.1 17 169-185 66-82 (146)
66 PF06645 SPC12: Microsomal sig 27.4 1.9E+02 0.0041 19.2 4.7 15 68-82 22-36 (76)
67 PF13584 BatD: Oxygen toleranc 26.9 1.2E+02 0.0025 27.5 4.8 12 204-215 468-479 (484)
68 PF12877 DUF3827: Domain of un 26.6 59 0.0013 30.7 2.8 34 160-193 268-301 (684)
69 PF05961 Chordopox_A13L: Chord 26.5 1.4E+02 0.0031 19.4 3.7 26 166-191 5-30 (68)
70 PTZ00250 variable surface prot 25.1 50 0.0011 28.9 1.9 70 145-216 259-329 (350)
71 cd00546 QFR_TypeD_subunitC Qui 24.4 2.7E+02 0.0059 20.5 5.3 25 2-26 4-28 (124)
72 PRK03814 oxaloacetate decarbox 24.3 2E+02 0.0044 19.6 4.5 14 167-180 15-28 (85)
73 PRK05886 yajC preprotein trans 24.3 58 0.0013 23.4 1.9 8 179-186 18-25 (109)
74 PRK13603 fumarate reductase su 23.6 2.9E+02 0.0062 20.4 5.3 25 2-26 4-28 (126)
75 PF05399 EVI2A: Ectropic viral 23.0 1.1E+02 0.0025 24.7 3.4 6 197-202 168-173 (227)
76 PRK04987 fumarate reductase su 23.0 2.9E+02 0.0063 20.5 5.3 25 2-26 8-32 (130)
77 COG2211 MelB Na+/melibiose sym 22.6 6E+02 0.013 23.3 10.4 31 52-82 116-146 (467)
78 PF01544 CorA: CorA-like Mg2+ 22.1 1.4E+02 0.0031 24.4 4.1 25 85-109 238-263 (292)
79 PF04145 Ctr: Ctr copper trans 21.7 49 0.0011 24.3 1.1 17 165-181 31-47 (144)
80 PRK09546 zntB zinc transporter 21.7 3.8E+02 0.0082 22.8 6.8 27 83-109 266-293 (324)
81 COG3115 ZipA Cell division pro 21.6 1.3E+02 0.0029 25.6 3.7 20 194-213 41-60 (324)
82 PF07219 HemY_N: HemY protein 21.2 55 0.0012 23.1 1.2 18 160-177 15-32 (108)
83 PF05393 Hum_adeno_E3A: Human 21.1 2.7E+02 0.0059 19.2 4.5 28 165-192 37-64 (94)
84 PF03967 PRCH: Photosynthetic 20.3 2.8E+02 0.0061 20.7 4.8 32 166-200 15-46 (136)
85 COG1055 ArsB Na+/H+ antiporter 20.2 6.5E+02 0.014 22.7 8.7 26 67-92 101-126 (424)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3e-33 Score=258.05 Aligned_cols=186 Identities=24% Similarity=0.473 Sum_probs=173.7
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
+|+||+.+|+|++.+|++||++.|+|+.++.+++|.++.|+++|+++++.+|+.+++++++..+++.++|+++++++|+.
T Consensus 421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~ 500 (617)
T TIGR00955 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSST 500 (617)
T ss_pred HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcc-c---------CCCCHHHHHh
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKF-D---------NNQDGEQILR 150 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~-~---------c~~~g~~~L~ 150 (223)
..|+.+++++..++++|+|++++.++||+ ||+| ++|+||++|++|+++.|||+|.++ + |+.+|+++|+
T Consensus 501 ~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~ 578 (617)
T TIGR00955 501 SMALTVGPPFVIPFLLFGGFFINSDSIPV-YFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILE 578 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChhhccH-HHHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHH
Confidence 99999999999999999999999999999 5665 999999999999999999998764 3 4457899999
Q ss_pred hhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040800 151 DTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLK 190 (223)
Q Consensus 151 ~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 190 (223)
. +|++.++ .|.++++|++++++|+++++++|+++.+++
T Consensus 579 ~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 579 T-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred h-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8 8888775 899999999999999999999999876544
No 2
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.7e-32 Score=268.27 Aligned_cols=188 Identities=22% Similarity=0.475 Sum_probs=175.9
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
||+||+.+|+|++++|++|++++|+|+.++.+++|.+|+||++|+++++++|+.|++++++..+++.+++.++++++||.
T Consensus 481 i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~ 560 (1394)
T TIGR00956 481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL 560 (1394)
T ss_pred ceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------------
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------------ 142 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------------ 142 (223)
..|+.+++++..++++++|+++|.++||+ ||+| ++|+||++|++|+++.|||+|.+++|+
T Consensus 561 ~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~W-~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~ 638 (1394)
T TIGR00956 561 SEAMTPAAILLLALSIYTGFAIPRPSMLG-WSKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKV 638 (1394)
T ss_pred HHHHHHHHHHHHHHHHHcccccChhhccH-HHHH-HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCcc
Confidence 99999999999999999999999999999 5665 999999999999999999999887773
Q ss_pred ------------CCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 143 ------------QDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 143 ------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
.+|+++|+..++++.++ .|.|+++|++++++|++++++++.+.++...
T Consensus 639 C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~ 698 (1394)
T TIGR00956 639 CTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKGAKQ 698 (1394)
T ss_pred ccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 17889999768888776 9999999999999999999999999774443
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=99.98 E-value=6.7e-32 Score=266.28 Aligned_cols=188 Identities=23% Similarity=0.428 Sum_probs=175.6
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
||+||+.+|+|++.+|++|+++.|+|+.++++++|.++.|+++|++++++.|+.+++++++..++++++|+++++++||.
T Consensus 1276 vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~ 1355 (1470)
T PLN03140 1276 VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQ 1355 (1470)
T ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC-------CCHHHHHhhhc
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN-------QDGEQILRDTW 153 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~-------~~g~~~L~~~~ 153 (223)
..|..+++++..++++|+|+++|.+.||. ||+| ++|+||++|++++++.+||+|.++.|+ ++++++++..+
T Consensus 1356 ~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (1470)
T PLN03140 1356 QVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHY 1433 (1470)
T ss_pred HHHHHHHHHHHHHHHHHeeeccChHHCch-HHHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhc
Confidence 99999999999999999999999999999 7875 999999999999999999999876543 24678877779
Q ss_pred CCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 154 QLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 154 ~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
|+++++ .|.+++++++|+++|++++++.+++.+.+|+
T Consensus 1434 g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1434 GYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999886 9999999999999999999999999887653
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=99.98 E-value=1.4e-31 Score=247.73 Aligned_cols=181 Identities=17% Similarity=0.317 Sum_probs=160.3
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
||+||+.+|+|++.+|++||++.|+|+.++.+++|.+|+||++|+++++++|+.|++++++..++++++|+++++++||.
T Consensus 467 v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~ 546 (659)
T PLN03211 467 IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA 546 (659)
T ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCc-----ccCCC------CHHHHH
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLK-----FDNNQ------DGEQIL 149 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~-----~~c~~------~g~~~L 149 (223)
..|+.+++++..++++|||++++ +||+ ||+| ++|+||++|++|+++.|||++.+ +.|+. .++.++
T Consensus 547 ~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~ 622 (659)
T PLN03211 547 KKASTIVTVTMLAFVLTGGFYVH--KLPS-CMAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV 622 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHh--hchH-HHHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc
Confidence 99999999999999999999997 7998 6775 99999999999999999997643 24642 123334
Q ss_pred hhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 150 RDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
+. ...+.. ..|.++++|+++.++++++++++|++.+
T Consensus 623 ~~-~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 623 EE-DVAGQI-SPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hh-hhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33 223333 3899999999999999999999998654
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=3.9e-31 Score=260.91 Aligned_cols=185 Identities=21% Similarity=0.391 Sum_probs=172.0
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
||+||+..++|++++|++|+++.++|+.++.+++|.+|.||++|+++++++|+.|++++++..+++.+++.++++++++.
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCccc---C----CCCHHHHHhhhc
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFD---N----NQDGEQILRDTW 153 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~---c----~~~g~~~L~~~~ 153 (223)
..|+.+++++..++++++||++|.++||+ ||+| ++|+||++|++||++.|||.+..+. | ..+|+++|+. +
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~ 754 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPN-WWEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-F 754 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCch-HHHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-c
Confidence 99999999999999999999999999999 5665 9999999999999999999776532 2 2489999987 8
Q ss_pred CCccCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040800 154 QLELGY-SKWVDLAILFGMVVVYRLVFLGIIKATEK 188 (223)
Q Consensus 154 ~~~~~~-~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 188 (223)
|++.++ +.|.++++|++++++|++++++++++.+.
T Consensus 755 g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 755 DVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred CcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 887654 57999999999999999999999998764
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=1.5e-29 Score=249.86 Aligned_cols=181 Identities=18% Similarity=0.261 Sum_probs=166.2
Q ss_pred eeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQH-------FFYFVLLLFACMMLVESLMMIVA 74 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~-------~~~~~~~~~l~~~~~~~lg~~i~ 74 (223)
++||+.+|+|++.+|++|+++.|+|+.++.+++|.+++|+++|+++++.. |+.+++++++..+++.++|++++
T Consensus 1159 ~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~ 1238 (1394)
T TIGR00956 1159 EVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVI 1238 (1394)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999877655 99999999999999999999999
Q ss_pred HhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------
Q 040800 75 SLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------ 142 (223)
Q Consensus 75 a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------ 142 (223)
+++|+...|+.+++++..++++|||+++|.++||. +|+| ++|+||++|++++++.++|+|.++.|.
T Consensus 1239 ~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~ 1316 (1394)
T TIGR00956 1239 SFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSG 1316 (1394)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCC
Confidence 99999999999999999999999999999999999 7886 999999999999999999998775442
Q ss_pred --------------------------------CCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 143 --------------------------------QDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 143 --------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
.+|+++|+. ++++.++ .|.|++++.+|++++ ++++++++++.
T Consensus 1317 ~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956 1317 QTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred CCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhhHHHHHH-HHHHHhhheEE
Confidence 288999998 7887776 899999999999999 77777777754
No 7
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.2e-29 Score=229.37 Aligned_cols=187 Identities=28% Similarity=0.609 Sum_probs=173.5
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
+|.||+.+|+|+..+|++|++++++|+.++.+++|.++.|+++|++++..+|+.+++++++..++++++|+++++..||.
T Consensus 418 ~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~ 497 (613)
T KOG0061|consen 418 IFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNL 497 (613)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCc--------ccCCCCHHHHHhhh
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLK--------FDNNQDGEQILRDT 152 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~--------~~c~~~g~~~L~~~ 152 (223)
..|+.+++++..++++++|++++.+++|+ +|+ |++|+|+++|++|+++.|+|++.. ..|..+|.++++.
T Consensus 498 ~~a~~~~~~~~~~f~l~~G~fi~~~~ip~-~~~-w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~- 574 (613)
T KOG0061|consen 498 SLATSLGPVLLLPFLLFGGFFINFDSIPK-YFR-WISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ- 574 (613)
T ss_pred hheeehHHHHHHHHHHHhhhhcCcccccH-HHH-HHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-
Confidence 99999999999999999999999999999 455 599999999999999999998522 2355689999998
Q ss_pred cCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 153 WQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 153 ~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
.+++.++ .|.|+.++.++.++|+++++++++++.|.++
T Consensus 575 ~~~~~~~-~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 575 LGFEDSS-FWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccc-cchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 7787775 9999999999999999999999999887653
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.1e-28 Score=231.97 Aligned_cols=188 Identities=28% Similarity=0.503 Sum_probs=174.0
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
||+|||...+|++|++.++.++.++|..++.+++|.+|.|++.|+.+++++|+.+++++++..+|..++..++++++++.
T Consensus 520 v~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~ 599 (1391)
T KOG0065|consen 520 VFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTL 599 (1391)
T ss_pred hHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------C-----
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------Q----- 143 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------~----- 143 (223)
..|+.++++......+++|+.+|.++||+ ||+ |++|++|+.|++|+++.|||.|..++|. +
T Consensus 600 ~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~ 677 (1391)
T KOG0065|consen 600 SIANLIGGILLLVLFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAA 677 (1391)
T ss_pred HHHhhHhHHHHHHHHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchh
Confidence 99999999999999999999999999998 455 5999999999999999999999999887 1
Q ss_pred ----------CHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 144 ----------DGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 144 ----------~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
+|.++++..++++..+ .|++++++++|.++|.++..+++.+.+..+.
T Consensus 678 ~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~ 734 (1391)
T KOG0065|consen 678 TGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLKK 734 (1391)
T ss_pred hccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 5566666656666765 9999999999999999999999999775554
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.2e-24 Score=206.66 Aligned_cols=188 Identities=23% Similarity=0.359 Sum_probs=169.4
Q ss_pred CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800 1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY 80 (223)
Q Consensus 1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~ 80 (223)
+++||+.+|+||+.+|++|+++.|+|+.++++.+|.++.|+++|+..++.+++.+++..+++.++...+|+++.+++||.
T Consensus 1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------CCHHHH
Q 040800 81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------QDGEQI 148 (223)
Q Consensus 81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------~~g~~~ 148 (223)
+.|..+.+.++....+|||++.|+..||. ||.| ++|+||.+|.++++...+++|.+..|. ++..++
T Consensus 1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~ 1341 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEF 1341 (1391)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHH
Confidence 99999999999999999999999999999 7886 999999999999999999999887774 356688
Q ss_pred HhhhcC----CccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 149 LRDTWQ----LELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 149 L~~~~~----~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
++.++| +.++. .-..-++...+.+.+.+++.+.+++.++.++
T Consensus 1342 m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1342 MEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 888777 55553 3334446677888999999998888777654
No 10
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.67 E-value=3.2e-15 Score=120.36 Aligned_cols=151 Identities=12% Similarity=0.103 Sum_probs=124.2
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~ 91 (223)
+++.++++|.+...+..+++..+...+.+++.|+++. +++.+++..++..+++.++|..++++.++...+ ......
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 6778899999999999999999999999998998753 567778888889999999999999999875443 344455
Q ss_pred HHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHH
Q 040800 92 GMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGM 171 (223)
Q Consensus 92 ~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~ 171 (223)
.++++++|.+.|.+.||+ +++ |+++++|.+|+.+++....++| +.+ ..+.++++|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~-~~~-~i~~~~P~t~~~~~~r~~~~~~-------------------~~~-~~~~~~~~L~~~ 191 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPA-FFQ-AIHPFLPMTYSVNGLRQLISGG-------------------NDG-TLWQAVAVLLLI 191 (208)
T ss_pred HHHHccCCCccchhhCHH-HHH-HhhhhCcHHHHHHHHHHHHhCC-------------------cHH-HHHHHHHHHHHH
Confidence 677788999999999999 455 4999999999999997666532 111 378899999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 040800 172 VVVYRLVFLGIIKATEK 188 (223)
Q Consensus 172 ~v~~~~la~~~l~~~~~ 188 (223)
.+++.+++...+|+++|
T Consensus 192 ~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 192 LVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 99999999887776553
No 11
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.58 E-value=4.6e-14 Score=115.57 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=117.6
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVA 74 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~ 74 (223)
.+||++|.+ ++..|+++|.+...+..+++..++. +.+++.|++.... ....+....+....+.++|.+++
T Consensus 60 ~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 137 (232)
T TIGR00025 60 ARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALG 137 (232)
T ss_pred HHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888 6899999999988888877765555 4455678865432 33344455555566677777777
Q ss_pred Hhcc---chHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhh
Q 040800 75 SLVP---NYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRD 151 (223)
Q Consensus 75 a~~~---~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~ 151 (223)
.+.+ +.+.+..+.+.+..+..++||.+.|.+.||+ ++++ +++++|.+|+.+++.....++.
T Consensus 138 ~~~~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~-~lq~-i~~~~P~t~~~~~~r~~~~~~~-------------- 201 (232)
T TIGR00025 138 LVAGGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPT-WIKW-FVRVQPSSYATEALRQAATVSV-------------- 201 (232)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHhheeeecccccH-HHHH-HHHhCcHHHHHHHHHHHHcCCC--------------
Confidence 7764 4444577888889999999999999999999 4555 9999999999999876543321
Q ss_pred hcCCccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800 152 TWQLELGYSKWVDLAILFGMVVVYRLVFLGIIK 184 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~ 184 (223)
+.+ ..+.+++.+.++.+++..++...++
T Consensus 202 ----~~~-~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 202 ----DTF-GAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred ----Chh-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112 2678888999999988888876554
No 12
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.58 E-value=8.1e-17 Score=128.51 Aligned_cols=129 Identities=27% Similarity=0.429 Sum_probs=119.5
Q ss_pred eeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 040800 2 FERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYL 81 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~ 81 (223)
+.||+.++.|++.+|+++|.+.+++..++..+++..+.+.+.|++.+ ++..+++..++...++.++|.+++.++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~ 159 (210)
T PF01061_consen 82 LERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSFR 159 (210)
T ss_pred cccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhhh
Confidence 67999999999999999999999999999999999999999999766 6778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhh
Q 040800 82 LGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEF 134 (223)
Q Consensus 82 ~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~ 134 (223)
.+..+.+.+..+++++||.+.|.+.+|+ |..|+.+++|++|+.|++..++|
T Consensus 160 ~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 160 DASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999997 44459999999999999988764
No 13
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.55 E-value=1.9e-13 Score=113.46 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=126.4
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVA 74 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~ 74 (223)
.|||++|.+ ++..+++||.+.+....+++.++...+.+ ..|..+ ..+......++++..+++.++|++++
T Consensus 83 ~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 83 ARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIE-WWSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776 78999999999998888888776655554 334433 24455555666778888889999999
Q ss_pred HhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcC
Q 040800 75 SLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQ 154 (223)
Q Consensus 75 a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~ 154 (223)
.+.++.+.+..+.+.+..|++++||.+.|.+.||+ ++++ +.+++|++|+.|++....+++
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~-~lq~-i~~~nPlt~~v~~~R~~~~g~------------------ 220 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND-VIQG-MTHFLPLAHSIDDIRPVMLGG------------------ 220 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH-HHHH-HHHHCcHHHHHHHHHHHHhCC------------------
Confidence 99999999998899999999999999999999999 4555 999999999999986654321
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 155 LELGYSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 155 ~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
+.. +.+.+++++.++.+++..++...++++.
T Consensus 221 -~~~-~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 221 -PGT-QVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred -CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 2567889999999999998887766643
No 14
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.53 E-value=2e-13 Score=111.93 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=120.9
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~ 91 (223)
++..|+++|.+.+.+..+++..+...+.+++.+.+. ..+....+..++...+..++|.+++...+|.+.++.+.+.+.
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~ 165 (236)
T TIGR01247 88 SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLM 165 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 578999999999999999999999988888777653 344545556666777889999999999999999999999999
Q ss_pred HHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHH
Q 040800 92 GMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGM 171 (223)
Q Consensus 92 ~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~ 171 (223)
.+..++||.+.|.+.+|+ ++++ +.+++|.+|+.|++.....++. ... +.+.+++++.++
T Consensus 166 ~~l~~lsG~~~P~~~~P~-~~~~-i~~~~P~~~~~~~~r~~~~~~~------------------~~~-~~~~~~~~l~~~ 224 (236)
T TIGR01247 166 LPMFFLSGAFYPITTMPA-WMQG-LAKINPLTYAVDGARYYLAGVS------------------PTF-PLEQDLLVLTLL 224 (236)
T ss_pred HHHHHHHHhhcCHHhCHH-HHHH-HHHHCcHHHHHHHHHHHHhCCC------------------ccc-chHHHHHHHHHH
Confidence 999999999999999999 4555 9999999999999765333211 112 267899999999
Q ss_pred HHHHHHHHHH
Q 040800 172 VVVYRLVFLG 181 (223)
Q Consensus 172 ~v~~~~la~~ 181 (223)
++++..++..
T Consensus 225 ~~~~~~l~~~ 234 (236)
T TIGR01247 225 AVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.34 E-value=7.3e-11 Score=98.15 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 040800 11 YGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGI 90 (223)
Q Consensus 11 Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~ 90 (223)
.++..+.+++++.......++..+...+.+...|.++. .........++........|++++.+.++.+....+.+.+
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 37888999999998888777777776666665576532 2333333434434444455899998888888888889999
Q ss_pred HHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHH
Q 040800 91 QGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFG 170 (223)
Q Consensus 91 ~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~ 170 (223)
..+++.+||.+.|.+.+|+ |.+|+.+++|++|..|++...... .+.. +.|.+++++++
T Consensus 179 ~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g-------------------~~~~-~~~~~l~~l~~ 236 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLG-------------------ISDV-PLWLAFAVLLV 236 (257)
T ss_pred HHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcC-------------------CCCc-cHHHHHHHHHH
Confidence 9999999999999999998 544599999999999999754432 1111 26789999999
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 040800 171 MVVVYRLVFLGIIKATEKL 189 (223)
Q Consensus 171 ~~v~~~~la~~~l~~~~~~ 189 (223)
+.+++..++...+|++++-
T Consensus 237 ~~~v~~~la~~~~~r~~~~ 255 (257)
T PRK15066 237 FIVVLYLLAWYLLERGRGL 255 (257)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 9999999998887766543
No 16
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.33 E-value=6.1e-11 Score=98.32 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~ 91 (223)
++..+.++|++.+....+++..+...+.+. .|.+.+..++.......++..+...++|++++.+.++.+.+..+.+.+.
T Consensus 100 ~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~~ 178 (253)
T TIGR03861 100 PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFVI 178 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 688899999999998888887666655543 3665443444444555566778888999999999999888888888999
Q ss_pred HHHHhhcccccCCCCC---cchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHH
Q 040800 92 GMMILGGGFFQLPNDI---PKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAIL 168 (223)
Q Consensus 92 ~~~~l~sG~~~~~~~~---p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL 168 (223)
.+++.+||.+.|.+.+ |+ |..|+.+++|++|..|++.....++ . .+..++.+
T Consensus 179 ~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~----------------------~-~~~~~~~~ 233 (253)
T TIGR03861 179 FPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ----------------------L-NLPALGWT 233 (253)
T ss_pred HHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC----------------------c-chhHHHHH
Confidence 9999999999999777 66 4445999999999999997543211 1 34566778
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040800 169 FGMVVVYRLVFLGIIKA 185 (223)
Q Consensus 169 ~~~~v~~~~la~~~l~~ 185 (223)
.++.+++..++...+|+
T Consensus 234 ~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 234 LGATTLFTLLAFWGFDP 250 (253)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888888775544
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.33 E-value=7.7e-12 Score=96.07 Aligned_cols=124 Identities=14% Similarity=0.029 Sum_probs=93.5
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHH---HHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFF---YFVLLLFACMMLVESLMM 71 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~---~~~~~~~l~~~~~~~lg~ 71 (223)
.+||++|++ ++..++++|.+......+++..+...+.+. .|++... .+. ....+..+..+....+|.
T Consensus 13 ~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~~ 90 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALVM 90 (152)
T ss_pred HHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777 789999999999999999999988888854 4887653 333 233333444556666666
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHH
Q 040800 72 IVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFK 131 (223)
Q Consensus 72 ~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~ 131 (223)
.++...++.+ +....+.+..|..++||.+.|.+.||+ |..|+.+++|.+|+.|++..
T Consensus 91 ~~a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 91 AMALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence 6655555544 444567788899999999999999999 65569999999999999864
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.26 E-value=2.8e-10 Score=94.40 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=127.5
Q ss_pred eeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 040800 4 RERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVA- 74 (223)
Q Consensus 4 rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~- 74 (223)
+|++.|.. +...+++++.+.......+...+...+..++.|.. ...++........+..+...++|.+++
T Consensus 113 ~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 191 (286)
T COG0842 113 REREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLST 191 (286)
T ss_pred hHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666 34678888888888888788777777777777743 345666677777778888888888666
Q ss_pred HhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcC
Q 040800 75 SLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQ 154 (223)
Q Consensus 75 a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~ 154 (223)
...++.+.+..+...+..+..+++|.+.|.+.+|. |..|+.++.|.+|+.|++......+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~----------------- 252 (286)
T COG0842 192 FAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGW----------------- 252 (286)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCC-----------------
Confidence 35566777888888999999999999999999998 54459999999999999976655322
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040800 155 LELGYSKWVDLAILFGMVVVYRLVFLGIIKATEK 188 (223)
Q Consensus 155 ~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 188 (223)
..+ +.+.+++++.++.+++.+++...++++++
T Consensus 253 -~~~-~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 253 -RND-GIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred -chh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 112 27889999999999999999998887765
No 19
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.71 E-value=2.5e-09 Score=90.68 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPG---LHKGYQHFFYFVLLLFACMMLVESLMM 71 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g---~~~~~~~~~~~~~~~~l~~~~~~~lg~ 71 (223)
.+||++|.. ++..|+++|.+..+...++..++...+ +.| ++. .++...++..++..++..++|.
T Consensus 183 ~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~ 257 (344)
T PF12698_consen 183 VEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFISFGF 257 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence 467666665 678999999999999999988877764 444 443 3566677888889999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhh
Q 040800 72 IVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRD 151 (223)
Q Consensus 72 ~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~ 151 (223)
+++.++++...+..++.++..+...++|...|.+.+|+ +.++ +.++.|.+|..+++....++
T Consensus 258 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~P~~~~~~~~~~~~~~---------------- 319 (344)
T PF12698_consen 258 LISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQW-ISSFLPFYWFIQGLRNIIYG---------------- 319 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHHH-HHHHhhHHHHHHHHHHHHHh----------------
Confidence 99999999999888888887777788888888888998 4565 88999999998887544321
Q ss_pred hcCCccCchhHHHHHHHHHHHHHHHHHHH
Q 040800 152 TWQLELGYSKWVDLAILFGMVVVYRLVFL 180 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~iL~~~~v~~~~la~ 180 (223)
. .. ..+.++++++++.+++.+++.
T Consensus 320 ---~-~~-~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 320 ---D-WS-EIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp -----------------------------
T ss_pred ---c-HH-HHHHHHHHHHHHHHHHHHHHh
Confidence 1 11 266788888888888887764
No 20
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.66 E-value=9.5e-07 Score=72.83 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=96.7
Q ss_pred eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHh--hhhhhhhccccc---ccchhHHHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSL--VPGAIVYYLPGL---HKGYQHFFYFVLLLFACMMLVES 68 (223)
Q Consensus 2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~--i~~~i~y~~~g~---~~~~~~~~~~~~~~~l~~~~~~~ 68 (223)
+-|||++|+. +++.++++|.++......+... +...+.....|. +.+.+.+...++..++...+..+
T Consensus 73 ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 152 (240)
T TIGR03518 73 FAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTA 152 (240)
T ss_pred HHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3489999998 7899999999999866554332 111111112222 12455666566666777788999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCC--cchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHH
Q 040800 69 LMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDI--PKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGE 146 (223)
Q Consensus 69 lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~--p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~ 146 (223)
+|.++|++.+++..|..++........ .|... ..++ |+ +..|+.++||.+|..+... ..
T Consensus 153 ig~~iSsl~~~q~~a~~~~~~~~~~l~--~~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~~-g~------------- 213 (240)
T TIGR03518 153 IGLFASSLTENQIVAFIIAVFLCFLFY--FGFDG-LASLLWGG--SAYTISELGLSYHYESISR-GV------------- 213 (240)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHH--HHHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHHc-Cc-------------
Confidence 999999999988887665544432222 22211 2233 55 5556999999888755441 11
Q ss_pred HHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040800 147 QILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKA 185 (223)
Q Consensus 147 ~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~ 185 (223)
+ .+.++...+.+++++..++...+++
T Consensus 214 --------i-----~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 214 --------I-----DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred --------c-----cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2467777888888888888766554
No 21
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=2.5e-05 Score=65.22 Aligned_cols=153 Identities=12% Similarity=0.044 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~ 91 (223)
++..+.+++++.++....+...+.....-+..+. + ..++........+..+.+.++|+++|.++--..--..+.+.+.
T Consensus 106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~-~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~ 183 (263)
T COG1682 106 PPLILPVARTLSRLFNFLIHLIIILIFLIILGVE-P-SWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL 183 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence 7888999999999887777765555544444443 3 3566666667777788888999999988766555556678888
Q ss_pred HHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHH
Q 040800 92 GMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGM 171 (223)
Q Consensus 92 ~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~ 171 (223)
.+.+..+|.+.|.+.+|+ .+++ +..+||+.|-.|......+.|... .+.+.....++
T Consensus 184 ~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~---------------------~~~~~~~~~~~ 240 (263)
T COG1682 184 QLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP---------------------DLHLLVYILLL 240 (263)
T ss_pred HHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc---------------------cHHHHHHHHHH
Confidence 999999999999999998 4666 999999999999997766543211 23455566666
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 040800 172 VVVYRLVFLGIIKATEKL 189 (223)
Q Consensus 172 ~v~~~~la~~~l~~~~~~ 189 (223)
.++...++...+++.+|+
T Consensus 241 ~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 241 TLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 777777777777776653
No 22
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.24 E-value=2.2e-06 Score=61.38 Aligned_cols=48 Identities=15% Similarity=0.331 Sum_probs=43.7
Q ss_pred CHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 040800 144 DGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPV 192 (223)
Q Consensus 144 ~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~ 192 (223)
+|+++|+..+++..++ .|+|++|+++|+++|.++.++++.+.+..+..
T Consensus 32 ~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~ 79 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSG 79 (103)
T ss_pred eHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 8999999779999997 99999999999999999999999998776664
No 23
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.13 E-value=0.00011 Score=61.36 Aligned_cols=110 Identities=14% Similarity=0.023 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCC
Q 040800 57 LLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEG 136 (223)
Q Consensus 57 ~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~ 136 (223)
...++..+.+.++|+++|++..-..-...+.+.+..+.+..+|.+.|.+.+|+ .+++ +.+.||+.+.+|+.....+++
T Consensus 153 ~~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~~-il~~NPl~~~ie~~R~~~~~~ 230 (264)
T PRK15176 153 EGMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLLS-IFSWNPLLHANEIVREGMFEG 230 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHHH-HHHHCcHHHHHHHHHHHHhcC
Confidence 33444666677888888777544333445567788889999999999999998 4565 889999999999998777643
Q ss_pred CcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 040800 137 LKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKL 189 (223)
Q Consensus 137 ~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~ 189 (223)
.. . .+.+.....++.++..+++....++.+.+
T Consensus 231 ~~------------------~---~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 231 YH------------------S---LYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred cC------------------c---cccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 0 12233566677777777787766665543
No 24
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.09 E-value=0.00015 Score=60.30 Aligned_cols=165 Identities=16% Similarity=0.244 Sum_probs=94.3
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHH---HHHhhhhh---hhhcccccccchhHHHHHHHHHHHHHH---H
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLI---IVSLVPGA---IVYYLPGLHKGYQHFFYFVLLLFACMM---L 65 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~---v~~~i~~~---i~y~~~g~~~~~~~~~~~~~~~~l~~~---~ 65 (223)
-+|+++|.- ++..++++|.++.....+ +...+-.. ......|.+.+...+...........+ +
T Consensus 91 a~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T PF12679_consen 91 AGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAVLV 170 (277)
T ss_pred HhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 467887765 799999999999988743 22222111 111223444455555544444433333 4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccc-CCCCCcchhhh--hhhhhhcHHHHHHHHHHHhhhCCCcccCC
Q 040800 66 VESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQ-LPNDIPKIFWK--YPLYYIVFHKYAYQGMFKNEFEGLKFDNN 142 (223)
Q Consensus 66 ~~~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~~p~~~~~--~wl~~isp~~y~~~~l~~~~~~~~~~~c~ 142 (223)
..++|+++|++.++...|..++..+............ ..+......+. ..+.+++|..+. +.......++.
T Consensus 171 ~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~----- 244 (277)
T PF12679_consen 171 FISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPF-NLLIGSILGGG----- 244 (277)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHH-HHHHHHhhccc-----
Confidence 6899999999999888887776665444433333222 11111110011 115677776543 22222221110
Q ss_pred CCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040800 143 QDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKAT 186 (223)
Q Consensus 143 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~ 186 (223)
+.+...|.+++.++++.+++..+++..+++|
T Consensus 245 -------------~~~~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 245 -------------FVWLSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0001378899999999999999999776664
No 25
>COG1511 Predicted membrane protein [Function unknown]
Probab=97.72 E-value=0.00086 Score=64.26 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=110.8
Q ss_pred ccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 040800 6 RLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGII 85 (223)
Q Consensus 6 ~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~ 85 (223)
..++.+....|++++....+.....+..+-....+++.|+... +-+.+++..+....++..+-..+.+++. ..+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~--~~~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK--SPLLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC--chhHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence 4677788999999999999999999999888888888887642 2333444444444455555444445554 45566
Q ss_pred HHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHH
Q 040800 86 TGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDL 165 (223)
Q Consensus 86 ~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~ 165 (223)
+..++.+.+...+|-..|....|. +++. +...-|++|++..+.... .+.... ..|.++
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~-------------------~~~~~~-~~~~~~ 743 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVI-------------------GGPIPS-NLWSGL 743 (780)
T ss_pred HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhh-------------------ccCchH-HHhhhH
Confidence 667778889999999999999998 6777 999999999966663221 112222 277888
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhhc
Q 040800 166 AILFGMVVVYRLVF-LGIIKATEKL 189 (223)
Q Consensus 166 ~iL~~~~v~~~~la-~~~l~~~~~~ 189 (223)
+++..+.+++++.. ++.+....+.
T Consensus 744 ~~~~~~~i~~~~~~~~~~~~~~~~~ 768 (780)
T COG1511 744 LALIGFLILFIIGGLFLKLPLDKKL 768 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777743 4444444433
No 26
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.32 E-value=0.022 Score=47.52 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=111.7
Q ss_pred eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhh--h-hhhccccccc---chhHHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPG--A-IVYYLPGLHK---GYQHFFYFVLLLFACMMLVE 67 (223)
Q Consensus 2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~--~-i~y~~~g~~~---~~~~~~~~~~~~~l~~~~~~ 67 (223)
+-+|+++|+- ++..-+++|.+.-+....+..++.. . ......|... +......+....++......
T Consensus 83 is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (278)
T COG1277 83 ISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLL 162 (278)
T ss_pred hhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 4578888876 7899999999999877776666555 2 2233334332 33355677778888889999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccC------CCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCC-Cccc
Q 040800 68 SLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQL------PNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEG-LKFD 140 (223)
Q Consensus 68 ~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~-~~~~ 140 (223)
+++.+++...++...+..++..+.....+..+.... ....|. -.. +...+|..+..+......... .+..
T Consensus 163 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (278)
T COG1277 163 SISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPT--LNT-LSLLLPLYLLAELAFTILLQSGFSDS 239 (278)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHH-HhccCHHHHHHHHhhhhccccccccc
Confidence 999999999999888777666654444433333211 111111 122 778889888888765544311 0000
Q ss_pred CCCCHHHHHhhhcCCccC-chhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 141 NNQDGEQILRDTWQLELG-YSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 141 c~~~g~~~L~~~~~~~~~-~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
..+.... ...|.+..++.++.+++..++++.+++|+
T Consensus 240 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 240 -----------ILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred -----------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0111111 13788999999999999999999887764
No 27
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=97.24 E-value=0.00067 Score=44.07 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=40.0
Q ss_pred CHHHHHhhhcCCccCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040800 144 DGEQILRDTWQLELGY-SKWVDLAILFGMVVVYRLVFLGIIKATEKLK 190 (223)
Q Consensus 144 ~g~~~L~~~~~~~~~~-~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 190 (223)
-|+++|+. .|+..+. +.|.++++|++++++|.++..++|.+.+...
T Consensus 12 lG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 12 LGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred HHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 58999999 7776653 6999999999999999999999999987643
No 28
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.21 E-value=0.0095 Score=52.47 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhccccccc--ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHK--GY--QHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITG 87 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~--~~--~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~ 87 (223)
++..+++-|.+......++.++.++.+. ...+++. .. +.|..+|....+...+.-...-.+.++.+.+-. .+.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~~--~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPFM--PFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHH
Confidence 8889999999999999999999988888 4444432 33 458888877766655543333333344433332 223
Q ss_pred HHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHH
Q 040800 88 SGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAI 167 (223)
Q Consensus 88 ~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i 167 (223)
.+..++..+-+ .+.|.+-.|. +++| .+=. |++.++|++....|++. .. ....++++
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~-------------------~~-~lg~n~gi 372 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTC-------------------KG-QLGRNYGI 372 (382)
T ss_pred HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCC-------------------cc-cccchHHH
Confidence 33344455555 5679999998 6775 5555 99999999987755422 11 27789999
Q ss_pred HHHHHHHH
Q 040800 168 LFGMVVVY 175 (223)
Q Consensus 168 L~~~~v~~ 175 (223)
|++|.++-
T Consensus 373 l~aw~~v~ 380 (382)
T PF12051_consen 373 LFAWIVVN 380 (382)
T ss_pred HHHHHHHH
Confidence 99998764
No 29
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=96.47 E-value=0.014 Score=47.39 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=67.0
Q ss_pred eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIV 73 (223)
Q Consensus 2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i 73 (223)
|.+|+++|.. ++..++++|.++......+...+...+...+.|.+. .+...+...+.+......++|.+.
T Consensus 68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~ 145 (215)
T PF03379_consen 68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLL 145 (215)
T ss_pred HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6789999985 567899999999998888777777777777777753 456666777777778888888888
Q ss_pred HHhccchHHHHHHHHHHHHHH
Q 040800 74 ASLVPNYLLGIITGSGIQGMM 94 (223)
Q Consensus 74 ~a~~~~~~~a~~~~~~~~~~~ 94 (223)
+++.-+......+.++...|.
T Consensus 146 aal~~~~r~~~~Ll~lL~lPl 166 (215)
T PF03379_consen 146 AALAAGARGREILLPLLLLPL 166 (215)
T ss_pred HHHHHhccccCHHHHHHHHHH
Confidence 888665555445555554443
No 30
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.19 E-value=0.12 Score=42.38 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=91.2
Q ss_pred eeeccCCCc-----chHHHHHHHHHHHhhHHHHHHh---hhhhhhhccccc----ccchhHHHHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY-----GATAFVVGNSFSAVPYLIIVSL---VPGAIVYYLPGL----HKGYQHFFYFVLLLFACMMLVESLM 70 (223)
Q Consensus 3 ~rE~~~g~Y-----~~~~y~lak~l~~~p~~~v~~~---i~~~i~y~~~g~----~~~~~~~~~~~~~~~l~~~~~~~lg 70 (223)
.+|.++|.. +|..|...+.-++.+......+ +-.+..+.+.+- -.+......+...+.+....--.+-
T Consensus 85 ~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~F~i~ 164 (268)
T COG4587 85 EKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLRFLIQ 164 (268)
T ss_pred HHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666654 5667777776666655444422 222222332221 1233343333333333322222222
Q ss_pred HHHHHh-ccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHH
Q 040800 71 MIVASL-VPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQIL 149 (223)
Q Consensus 71 ~~i~a~-~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L 149 (223)
..+++. +.+ +-|+.+.-.....-.+.||.+.|.+..|+ +.+. +--..|+.|....=.... +
T Consensus 165 f~~~~~aFwt-~~as~l~~~~~~l~~f~sG~l~PL~~fP~-~v~~-il~ftPFpy~~y~P~~ll---------------v 226 (268)
T COG4587 165 FTFGLFAFWT-ERASSLGKFWWLLYAFLSGSLAPLAFFPD-WVRA-ILAFTPFPYLLYTPVMLL---------------V 226 (268)
T ss_pred HHHHHHHhhc-cchhhHHHHHHHHHHHhccccchHHhChH-HHHH-HHHhCCchhhhccHHHHH---------------h
Confidence 233333 344 44566677777888999999999999999 3444 666667777644211111 1
Q ss_pred hhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 150 RDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
.. .+.+ ..++++++.+++..++.++.-...|+-.
T Consensus 227 Gk---~s~~-~il~al~v~~~Wl~im~~l~~~lWrrgl 260 (268)
T COG4587 227 GK---YSGA-QILKALLVQIGWLLIMWLLSRWLWRRGL 260 (268)
T ss_pred cc---ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2233 3889999999999999999887776644
No 31
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=96.19 E-value=0.39 Score=38.99 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHh-hHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAV-PYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGI 90 (223)
Q Consensus 12 ~~~~y~lak~l~~~-p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~ 90 (223)
+...+.+++-+..- ...++...+.........+.+.+..++..+.+.+.+..+...++...+++++=-......+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~--- 148 (229)
T PF06182_consen 72 NYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS--- 148 (229)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 45556666555543 33333343333333434567677778887777777777777777777766532222222222
Q ss_pred HHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHH
Q 040800 91 QGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFG 170 (223)
Q Consensus 91 ~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~ 170 (223)
.....+++|...|.+-.|+ +.+..+.++.|+.+....=..... +..+ ....++.-.+
T Consensus 149 ~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P~~~ll---------------------g~~~-~~~~~~~q~~ 205 (229)
T PF06182_consen 149 YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVPARILL---------------------GKIS-PLFILLIQAI 205 (229)
T ss_pred HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHHHHHHc---------------------CCCc-HHHHHHHHHH
Confidence 3344559999999999999 566656666899886443222111 1111 2344444467
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 040800 171 MVVVYRLVFLGIIKATEK 188 (223)
Q Consensus 171 ~~v~~~~la~~~l~~~~~ 188 (223)
+.+++..++.+..|+-.|
T Consensus 206 ~~~v~~~l~~~~w~~glr 223 (229)
T PF06182_consen 206 WILVLFLLSRLLWRKGLR 223 (229)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776666443
No 32
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=95.98 E-value=0.39 Score=51.09 Aligned_cols=163 Identities=10% Similarity=0.063 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~ 91 (223)
+.+.|++|+.+..+...++.+++.+++.... .+ ....+++..++.++++.++..+++.++|+++.+...|..+++++.
T Consensus 692 ~~~~~w~sWfi~~~~~~~i~~~l~~~il~~~-~~-~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~ 769 (2272)
T TIGR01257 692 SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHG-RI-LHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIY 769 (2272)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ce-eecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7789999999998877777655544443221 11 123455667777888888999999999999999999998888876
Q ss_pred HHHHhhcccc-cCCCCCcchhhhhhhhhhcHHHHHHHHHHHh--hhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHH
Q 040800 92 GMMILGGGFF-QLPNDIPKIFWKYPLYYIVFHKYAYQGMFKN--EFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAIL 168 (223)
Q Consensus 92 ~~~~l~sG~~-~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~--~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL 168 (223)
....+--.+. .-.+.++. ..++.++-+||...++..-... |-.+.....+. +.+. -..+.+.+....+++|
T Consensus 770 f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n----~~~~-~~~~d~~s~~~~~~ml 843 (2272)
T TIGR01257 770 FTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSN----IGNS-PLEGDEFSFLLSMKMM 843 (2272)
T ss_pred HHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHHHHHHHHhhhCCCccccc----cccc-ccCCCCccHHHHHHHH
Confidence 5543322211 12344554 2344466777766665433332 22222221110 0000 0011111244556667
Q ss_pred HHHHHHHHHHHHHH
Q 040800 169 FGMVVVYRLVFLGI 182 (223)
Q Consensus 169 ~~~~v~~~~la~~~ 182 (223)
++=++++.+++++.
T Consensus 844 ~~d~~lY~lL~~Yl 857 (2272)
T TIGR01257 844 LLDAALYGLLAWYL 857 (2272)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777654
No 33
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=1.1 Score=36.58 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=86.2
Q ss_pred eccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhc---ccccccch--hHHHHHHHHHHHHHHHHHHHHH
Q 040800 5 ERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYY---LPGLHKGY--QHFFYFVLLLFACMMLVESLMM 71 (223)
Q Consensus 5 E~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~---~~g~~~~~--~~~~~~~~~~~l~~~~~~~lg~ 71 (223)
|+++|.. +++..|++|.+.-+....+.+++.....+. ..|...+. ..++......++.+.-..++=.
T Consensus 78 Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~lQ~ 157 (239)
T COG4200 78 EHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVALQF 157 (239)
T ss_pred HhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665 689999999999988877776665555554 23443332 2333444455666666667777
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhh
Q 040800 72 IVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRD 151 (223)
Q Consensus 72 ~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~ 151 (223)
.++.-++|...|..++... |..+. ...++.|. | +-|-+|..-. +
T Consensus 158 wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~~~--------~----------------- 201 (239)
T COG4200 158 WLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPILPM--------F----------------- 201 (239)
T ss_pred HHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhhhh--------h-----------------
Confidence 7888888877777666555 32222 23344565 3 4455555411 1
Q ss_pred hcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 152 TWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 152 ~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
+.+.+.-.++..+.+..+++...+++.+++++
T Consensus 202 ----~~~l~v~~~i~~~~v~~ll~~l~s~l~~~r~~ 233 (239)
T COG4200 202 ----SGSLSVETGILFLGVLALLFLLSSFLFFKRKK 233 (239)
T ss_pred ----ccccccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11111334666677777778888887776654
No 34
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=95.39 E-value=1.3 Score=36.55 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=52.4
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhc----cc-ccccchhHHHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYY----LP-GLHKGYQHFFYFVLLLFACMMLVESL 69 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~----~~-g~~~~~~~~~~~~~~~~l~~~~~~~l 69 (223)
.+|+++|.| ++..+++||.+.-....++...+...+... +. +-+.+...+....+.+++.++....+
T Consensus 69 ~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l 148 (248)
T TIGR03733 69 EQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYII 148 (248)
T ss_pred HHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887 688999999998877776655543222221 11 12233455666666778888888899
Q ss_pred HHHHHHhccc
Q 040800 70 MMIVASLVPN 79 (223)
Q Consensus 70 g~~i~a~~~~ 79 (223)
+++++....+
T Consensus 149 ~l~ls~~~g~ 158 (248)
T TIGR03733 149 HLFVSFAFGM 158 (248)
T ss_pred HHHHHHHhCC
Confidence 9999888765
No 35
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=94.95 E-value=0.13 Score=41.62 Aligned_cols=88 Identities=15% Similarity=0.035 Sum_probs=63.2
Q ss_pred eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIV 73 (223)
Q Consensus 2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i 73 (223)
|.+|++||.. +....+++|.++......+.-.+...+.-.+.|++. .....+.+.+.+.......+|-+.
T Consensus 65 F~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~ 142 (211)
T TIGR01190 65 FRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIG 142 (211)
T ss_pred HHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999976 688999999999998877777776666666777753 334566677777778888888888
Q ss_pred HHhccchHHHHHHHHHHH
Q 040800 74 ASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 74 ~a~~~~~~~a~~~~~~~~ 91 (223)
+++.-+......+.+++.
T Consensus 143 aALt~g~r~~~~Ll~lL~ 160 (211)
T TIGR01190 143 AALTVGLKRGGLLLSLLV 160 (211)
T ss_pred HHHHHhccCCchHHHHHH
Confidence 887655443333444443
No 36
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.32 E-value=1.8 Score=38.62 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhh---------cccc--cccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVY---------YLPG--LHKGYQHFFYFVLLLF-ACMMLVESLMMIVASLVPN 79 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y---------~~~g--~~~~~~~~~~~~~~~~-l~~~~~~~lg~~i~a~~~~ 79 (223)
|+..++.||+++-..+.+.+..+.....+ ...+ +...+..+..+..... ...+...++..++++.+.+
T Consensus 228 Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~ 307 (407)
T COG1668 228 SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAGS 307 (407)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999998776666662 1111 2223333333433333 3334455588899999999
Q ss_pred hHHHHHHHH
Q 040800 80 YLLGIITGS 88 (223)
Q Consensus 80 ~~~a~~~~~ 88 (223)
.+.|+....
T Consensus 308 ~k~aq~~~~ 316 (407)
T COG1668 308 IKEAQTLIS 316 (407)
T ss_pred HHHHHHHhh
Confidence 988888777
No 37
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=93.84 E-value=1.8 Score=46.35 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 040800 12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLP--GLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSG 89 (223)
Q Consensus 12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~--g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~ 89 (223)
++.+|.++..+.++...++..+++.++.+.+- ++ .+..++...++++++++.+...+..++|.++++...|......
T Consensus 1719 ~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~-~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~ 1797 (2272)
T TIGR01257 1719 SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAY-TSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSC 1797 (2272)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhh-cCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 78999999999999988888777766655432 22 2335666777788999999999999999999998887655443
No 38
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=92.53 E-value=0.81 Score=35.77 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=50.4
Q ss_pred eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhh---ccccc-ccchhH----HHHHHHHHHHHHHH
Q 040800 2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVY---YLPGL-HKGYQH----FFYFVLLLFACMML 65 (223)
Q Consensus 2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y---~~~g~-~~~~~~----~~~~~~~~~l~~~~ 65 (223)
+.+|+++|++ ++..++.+|.+......++..++...+.+ .+.+. +.+... ...+.+...+....
T Consensus 70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
T PF12730_consen 70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF 149 (232)
T ss_pred HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 4578888876 78999999999998877666655333322 22221 122222 22333344444444
Q ss_pred HHHHHHHHHHhccchHHHHHHH
Q 040800 66 VESLMMIVASLVPNYLLGIITG 87 (223)
Q Consensus 66 ~~~lg~~i~a~~~~~~~a~~~~ 87 (223)
...+ .+++.+.+|...+..+.
T Consensus 150 ~~~~-~~i~~~~~~~~~~i~~~ 170 (232)
T PF12730_consen 150 ISLL-LFISSLFRNSIVAIIIS 170 (232)
T ss_pred HHHH-HHHHHHHhhHHHHHHHH
Confidence 5555 77788888866554433
No 39
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=92.34 E-value=5.4 Score=32.73 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=59.6
Q ss_pred eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhc---ccccc-cchhHHHHHHHHHHHHHHHHHHHH
Q 040800 3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYY---LPGLH-KGYQHFFYFVLLLFACMMLVESLM 70 (223)
Q Consensus 3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~---~~g~~-~~~~~~~~~~~~~~l~~~~~~~lg 70 (223)
.+|+++|.| +....++||.+.-....++..+++....+. +.+.. .+........+..++.++....+-
T Consensus 64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~ 143 (241)
T TIGR03732 64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLC 143 (241)
T ss_pred HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 578877776 678999999998877766665554432222 22322 122333444445555555556666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHH
Q 040800 71 MIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMF 130 (223)
Q Consensus 71 ~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~ 130 (223)
++++.-. + +.....+.....++.|.+...+ + .| ++.|..|..+.+.
T Consensus 144 l~ls~~~-g----~~~si~ig~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~ 189 (241)
T TIGR03732 144 LFLARKF-G----MFVSILVNLVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC 189 (241)
T ss_pred HHHHHHH-H----HHHHHHHHHHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence 6665333 2 2211112222233345543221 2 12 4568888877774
No 40
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.9 Score=36.44 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=63.6
Q ss_pred eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIV 73 (223)
Q Consensus 2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i 73 (223)
|++|++||.. ....-+++|++++-..+..--++..-+.+.+.+++ ...+....+.+++.......+|-.-
T Consensus 71 F~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga~g 148 (221)
T COG2386 71 FRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGAVG 148 (221)
T ss_pred HHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHHHH
Confidence 7889999987 46678899999999888887778888888888875 4566666767777766666777777
Q ss_pred HHhccchHHHHHHHHHHH
Q 040800 74 ASLVPNYLLGIITGSGIQ 91 (223)
Q Consensus 74 ~a~~~~~~~a~~~~~~~~ 91 (223)
+++.-+....-.+.+++.
T Consensus 149 aALtv~lrrgglLl~vlv 166 (221)
T COG2386 149 AALTVGLRRGGLLLSVLV 166 (221)
T ss_pred HHHHhcCccCCchhhHHH
Confidence 666555444444444443
No 41
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.20 E-value=1.7 Score=31.97 Aligned_cols=27 Identities=11% Similarity=0.173 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 161 KWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 161 ~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
.+..++++++.+.+..+++|++.|+++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666555555555433333
No 42
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.76 E-value=9 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=11.8
Q ss_pred CCcchhhhhhhhhhcHHHHHH
Q 040800 106 DIPKIFWKYPLYYIVFHKYAY 126 (223)
Q Consensus 106 ~~p~~~~~~wl~~isp~~y~~ 126 (223)
.+|+ |.| +.. +|++|+-
T Consensus 67 ~LPp--wP~-y~r-n~LkW~~ 83 (101)
T KOG4112|consen 67 TLPP--WPW-YRR-NPLKWAQ 83 (101)
T ss_pred cCCC--chh-hhc-CcccccC
Confidence 6777 765 555 8998863
No 43
>PF15050 SCIMP: SCIMP protein
Probab=65.20 E-value=9.4 Score=27.81 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=4.1
Q ss_pred cccccccCCC
Q 040800 193 VKAFMDVPPK 202 (223)
Q Consensus 193 ~~~~~~~~~~ 202 (223)
+++-+-.+|.
T Consensus 38 Gkkweiakp~ 47 (133)
T PF15050_consen 38 GKKWEIAKPL 47 (133)
T ss_pred cccceeccch
Confidence 3444444443
No 44
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.25 E-value=7.5 Score=28.68 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 040800 167 ILFGMVVVYR 176 (223)
Q Consensus 167 iL~~~~v~~~ 176 (223)
++++.+++++
T Consensus 7 iii~~i~l~~ 16 (130)
T PF12273_consen 7 IIIVAILLFL 16 (130)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 45
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=63.82 E-value=7.6 Score=33.12 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 167 ILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 167 iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
+.++.+++-.++.|+.||||||++.
T Consensus 263 iaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445556667788888887655
No 46
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=61.75 E-value=7.7 Score=33.73 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 161 KWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 161 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
+-.++++++++.+ -.++.|+.||||||++.
T Consensus 312 IiaSiIAIvvIVL-IMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 312 IIASIIAILIIVL-IMVIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhcchh
Confidence 4455544444444 44777889999998665
No 47
>PTZ00046 rifin; Provisional
Probab=61.75 E-value=7.7 Score=33.84 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 161 KWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 161 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
+-.++++++++.+ -.++.|+.||||||++.
T Consensus 317 IiaSiiAIvVIVL-IMvIIYLILRYRRKKKM 346 (358)
T PTZ00046 317 IIASIVAIVVIVL-IMVIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhcchh
Confidence 3345544444433 44777888999998665
No 48
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=57.93 E-value=70 Score=31.67 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=62.8
Q ss_pred cCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 040800 7 LNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIIT 86 (223)
Q Consensus 7 ~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~ 86 (223)
-.|+ ++.+|.++..+.+....++...++..+.+.+- . ....+.........+.......+..+.+.+++....+..+
T Consensus 333 i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~-~-~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~ 409 (885)
T KOG0059|consen 333 IAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIFG-F-FAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVI 409 (885)
T ss_pred HhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhheee-c-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceee
Confidence 3455 89999999999999998887776666665543 2 2334566667777788888899999999999988887766
Q ss_pred HHHHHHHH
Q 040800 87 GSGIQGMM 94 (223)
Q Consensus 87 ~~~~~~~~ 94 (223)
..++....
T Consensus 410 ~~i~~~~s 417 (885)
T KOG0059|consen 410 LSIYNLIS 417 (885)
T ss_pred hhhHHHHH
Confidence 66554443
No 49
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=47.99 E-value=2.2e+02 Score=25.94 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCH
Q 040800 66 VESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDG 145 (223)
Q Consensus 66 ~~~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g 145 (223)
..++...+..+.|....-.-+--++......++| .-+.|+ | +-.+||+.|.
T Consensus 448 ~l~ia~ll~GLaPr~t~laWlyl~~~~fvtyLg~----Llslpe--w---l~nlSp~~hi-------------------- 498 (536)
T COG3559 448 LLAIAVLLFGLAPRFTPLAWLYLIVGFFVTYLGG----LLSLPE--W---LLNLSPFAHI-------------------- 498 (536)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHH----hcccHH--H---HhcCCccccC--------------------
Confidence 3444555555666544333322223333334444 346676 3 7788888773
Q ss_pred HHHHhhhcCCcc-CchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800 146 EQILRDTWQLEL-GYSKWVDLAILFGMVVVYRLVFLGIIKATE 187 (223)
Q Consensus 146 ~~~L~~~~~~~~-~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 187 (223)
...+. |.+. ..+..+.++.+....+++...++|+
T Consensus 499 -------p~lpved~n~-~pll~l~ii~vaL~~lGf~~yrRRd 533 (536)
T COG3559 499 -------PRLPVEDFNA-VPLLWLLIIDVALITLGFMAYRRRD 533 (536)
T ss_pred -------ccCCccccch-HHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 11111 1223 3555666777777777777655543
No 50
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=46.98 E-value=48 Score=21.83 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 040800 168 LFGMVVVYRLVF 179 (223)
Q Consensus 168 L~~~~v~~~~la 179 (223)
++++.++|.++.
T Consensus 9 i~Gm~iVF~~L~ 20 (79)
T PF04277_consen 9 IIGMGIVFLVLI 20 (79)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 51
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=46.09 E-value=45 Score=20.80 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 040800 168 LFGMVVVYRLVFLGIIKATEK 188 (223)
Q Consensus 168 L~~~~v~~~~la~~~l~~~~~ 188 (223)
+++..+...+....+||+-.+
T Consensus 8 IIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHhHHHHHHHhcc
Confidence 333444444555666777665
No 52
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=44.54 E-value=62 Score=27.38 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcccc-cCCCCCcc
Q 040800 84 IITGSGIQGMMILGGGFF-QLPNDIPK 109 (223)
Q Consensus 84 ~~~~~~~~~~~~l~sG~~-~~~~~~p~ 109 (223)
..+.++++.|..+.+|++ .|.+.||.
T Consensus 261 LTvvt~IflP~t~IaGiyGMNf~~mP~ 287 (318)
T TIGR00383 261 LTVVSTIFIPLTFIAGIYGMNFKFMPE 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCcc
Confidence 345566788888999998 57778886
No 53
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=42.91 E-value=8.1 Score=32.80 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc
Q 040800 167 ILFGMVVVYRLVFLGIIKATEKLKPV 192 (223)
Q Consensus 167 iL~~~~v~~~~la~~~l~~~~~~~~~ 192 (223)
+++++.++..+++.+|.+++++.|..
T Consensus 154 VI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 154 VIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccc
Confidence 33344444555555666655544443
No 54
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.49 E-value=19 Score=26.45 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=6.9
Q ss_pred HHHHHHH-HHHHHHHHHH
Q 040800 168 LFGMVVV-YRLVFLGIIK 184 (223)
Q Consensus 168 L~~~~v~-~~~la~~~l~ 184 (223)
+++++|+ ++++.+++..
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 4444444 4444444333
No 55
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=39.48 E-value=3e+02 Score=25.10 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHH
Q 040800 51 HFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAY 126 (223)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~ 126 (223)
.-+.|-..+-...+...++..+++.++++......++-.......+. .-..+... .. ++|+||+-|.+
T Consensus 164 gs~afgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~llG~aflv----Rmi~Dvss---~~-L~WfsPlgW~~ 231 (536)
T COG3559 164 GSVAFGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFALLGTAFLV----RMIGDVSS---GT-LSWFSPLGWSL 231 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHH----HHHhcccc---cc-cccccCccceE
Confidence 34446666677777778888888888776544333222221111110 01123332 12 89999998863
No 56
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.90 E-value=19 Score=22.99 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 161 KWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 161 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
....+++++.+.+++.+...+.+....+.++
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~ 48 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRR 48 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666655555544443333
No 57
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=36.40 E-value=58 Score=23.96 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 040800 178 VFLGIIKA 185 (223)
Q Consensus 178 la~~~l~~ 185 (223)
++++.|.+
T Consensus 49 i~~~LLgr 56 (125)
T PF15048_consen 49 ISFFLLGR 56 (125)
T ss_pred HHHHHHHH
Confidence 33444444
No 58
>COG4393 Predicted membrane protein [Function unknown]
Probab=34.08 E-value=1.4e+02 Score=25.95 Aligned_cols=80 Identities=11% Similarity=0.193 Sum_probs=36.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHhhcccccCCCCCcchhhhhhhhhhcH
Q 040800 44 GLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGI--QGMMILGGGFFQLPNDIPKIFWKYPLYYIVF 121 (223)
Q Consensus 44 g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~--~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp 121 (223)
|..++....+....++++..+++ -+|.++++-.|..+.-+.....+ ......+.-.++..-++-. +|.--++.+.-
T Consensus 20 g~~w~~~p~~~~~~vvwl~~L~~-~~g~~~~~y~pKsq~~~l~l~~v~i~sLLlf~~sqfw~~i~l~~-Fw~~lLsF~aa 97 (405)
T COG4393 20 GITWNKKPIFKSFFVVWLGFLFG-YFGFFIAAYFPKSQNLILNLDFVFIGSLLLFFISQFWKKIELLN-FWLLLLSFCAA 97 (405)
T ss_pred cCCcccccchhHHHHHHHHHHHH-HHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34443333333333444444443 56788888877755543333333 2223333333333334443 45433444444
Q ss_pred HHHH
Q 040800 122 HKYA 125 (223)
Q Consensus 122 ~~y~ 125 (223)
+.|+
T Consensus 98 L~wg 101 (405)
T COG4393 98 LHWG 101 (405)
T ss_pred Hhhc
Confidence 4443
No 59
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=32.55 E-value=49 Score=28.62 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=42.6
Q ss_pred hhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 116 LYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGY---SKWVDLAILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 116 l~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~---~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
+.|.-|.--..-++..++.+|.+.. |.-+... .+.+. -+...+.+.+.+...|.+.+++.+.+.++..+
T Consensus 142 ~aW~iP~~~ti~vL~~~~VdgD~lt----GiC~Vg~---~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~ 213 (328)
T PF01534_consen 142 VAWGIPAVLTIAVLALRKVDGDELT----GICFVGN---QNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMK 213 (328)
T ss_pred HHhhhhHHHHHHHHHhccccccccc----ceeEEeC---CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 6667777777777777787776652 1111110 11110 15567778888888888999888777665443
No 60
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.56 E-value=32 Score=24.49 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=20.7
Q ss_pred cccccccCCCCCchhhhhhhhhhccCCCCC
Q 040800 193 VKAFMDVPPKPTTQIIENLEAIMINLPNTG 222 (223)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (223)
+.+...+..+ ..++++..|..+-++|++.
T Consensus 37 ~~~l~~~~~~-~~~Rl~~lE~~l~~LPt~~ 65 (106)
T PF10805_consen 37 IEKLEERLDE-HDRRLQALETKLEHLPTRD 65 (106)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCCHH
Confidence 4555444443 5677888999999999864
No 61
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.52 E-value=83 Score=18.74 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 040800 163 VDLAILFGMVVVYRLVFLGIIKAT 186 (223)
Q Consensus 163 ~~~~iL~~~~v~~~~la~~~l~~~ 186 (223)
.....++.+.++|..+.+.+.+.+
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 344455556666666555555443
No 62
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=31.50 E-value=75 Score=20.54 Aligned_cols=14 Identities=0% Similarity=0.232 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 040800 170 GMVVVYRLVFLGII 183 (223)
Q Consensus 170 ~~~v~~~~la~~~l 183 (223)
+++++|.++++.++
T Consensus 5 lY~~af~~L~~~a~ 18 (65)
T PF11189_consen 5 LYILAFTILLFLAF 18 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 63
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=31.08 E-value=1.6e+02 Score=21.41 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhcccccccccccCCCCCchhhhhhhhhh
Q 040800 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIM 215 (223)
Q Consensus 174 ~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (223)
.+.+++|+++....+.+|....- .+..++..|..++.++.+
T Consensus 50 ~~~~~~Yi~l~~~lp~~P~~~~~-~~~~~s~~~~l~~~~~~~ 90 (118)
T PRK10697 50 VFTLVAYIILSFALDPMPDNMAF-GEQQPSSSELLDEVDREL 90 (118)
T ss_pred hHHHHHHHHHHHhccCCcccccc-cccCCCHHHHHHHHHHHH
Confidence 35677788888877776643111 233334555566555544
No 64
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=30.07 E-value=82 Score=21.28 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 040800 167 ILFGMVVVYRLVFL 180 (223)
Q Consensus 167 iL~~~~v~~~~la~ 180 (223)
.+.++.++|.++..
T Consensus 11 ~v~GM~~VF~fL~l 24 (82)
T TIGR01195 11 TVLGMGIVFLFLSL 24 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544443
No 65
>PF15102 TMEM154: TMEM154 protein family
Probab=27.82 E-value=32 Score=26.03 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040800 169 FGMVVVYRLVFLGIIKA 185 (223)
Q Consensus 169 ~~~~v~~~~la~~~l~~ 185 (223)
+++.+++..+.+++.++
T Consensus 66 VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYY 82 (146)
T ss_pred HHHHHHHHHHHHheeEE
Confidence 33333333443443333
No 66
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.35 E-value=1.9e+02 Score=19.20 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=7.3
Q ss_pred HHHHHHHHhccchHH
Q 040800 68 SLMMIVASLVPNYLL 82 (223)
Q Consensus 68 ~lg~~i~a~~~~~~~ 82 (223)
.+|..+|.+..|...
T Consensus 22 iisfi~Gy~~q~~~~ 36 (76)
T PF06645_consen 22 IISFIVGYITQSFSY 36 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555444443
No 67
>PF13584 BatD: Oxygen tolerance
Probab=26.91 E-value=1.2e+02 Score=27.53 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=6.9
Q ss_pred Cchhhhhhhhhh
Q 040800 204 TTQIIENLEAIM 215 (223)
Q Consensus 204 ~~~~~~~~~~~~ 215 (223)
..+..++-+.+|
T Consensus 468 ~~~~l~~~~~a~ 479 (484)
T PF13584_consen 468 AKKSLKAAEQAL 479 (484)
T ss_pred HHHHHHHHHHHh
Confidence 344466666666
No 68
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=26.64 E-value=59 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 040800 160 SKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVV 193 (223)
Q Consensus 160 ~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~~ 193 (223)
+.|.-+++++-..+++.++.++..+..+++|-.+
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eF 301 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEF 301 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHhcccccCC
Confidence 4888888888888888888888777777666544
No 69
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=26.51 E-value=1.4e+02 Score=19.39 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 166 AILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 166 ~iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
.+|++++++-..+....+..+.+..+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 36666676666666666666555443
No 70
>PTZ00250 variable surface protein Vir23; Provisional
Probab=25.07 E-value=50 Score=28.90 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCC-Cchhhhhhhhhhc
Q 040800 145 GEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKP-TTQIIENLEAIMI 216 (223)
Q Consensus 145 g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 216 (223)
|..+|-..+|.+.++ -.+++.=++.+-+-.++.++.+-...+-.+.+++++..++++ ++.+.+|-++-|.
T Consensus 259 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (350)
T PTZ00250 259 GIPFILPIFGNDADD--IINILLKVAIISAPFLAIFLILFKFTPFGKKLNKIKAEGKKSGHKKKEENIEDYMK 329 (350)
T ss_pred CCceeeeecCCCHHH--HHHHHHhhhhhhhhHHHHHHHHhccCchHHHHHHhhhccCCCCccchHHHHHHHHH
Confidence 444444445555443 233333333333333333333333333333344455544444 3334455555444
No 71
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=24.37 E-value=2.7e+02 Score=20.50 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=22.4
Q ss_pred eeeeccCCCcchHHHHHHHHHHHhh
Q 040800 2 FERERLNGHYGATAFVVGNSFSAVP 26 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~p 26 (223)
|.||.+.+++...+||--.++.|..
T Consensus 4 YvR~m~~~WW~k~~FYr~YMlRE~T 28 (124)
T cd00546 4 YVRPMTPTWWKKLDFYRFYMLREAT 28 (124)
T ss_pred CcCCCCcchhhcCcHHHHHHHHHHh
Confidence 6899999999999999999998863
No 72
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=24.33 E-value=2e+02 Score=19.57 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 040800 167 ILFGMVVVYRLVFL 180 (223)
Q Consensus 167 iL~~~~v~~~~la~ 180 (223)
.++++.++|.++..
T Consensus 15 m~~GM~~VF~fL~l 28 (85)
T PRK03814 15 MLTGMGVVFIFLTL 28 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555554443
No 73
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.30 E-value=58 Score=23.41 Aligned_cols=8 Identities=0% Similarity=-0.168 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 040800 179 FLGIIKAT 186 (223)
Q Consensus 179 a~~~l~~~ 186 (223)
.++..+.+
T Consensus 18 yF~~iRPQ 25 (109)
T PRK05886 18 MYFASRRQ 25 (109)
T ss_pred HHHHccHH
Confidence 33433333
No 74
>PRK13603 fumarate reductase subunit C; Provisional
Probab=23.61 E-value=2.9e+02 Score=20.42 Aligned_cols=25 Identities=0% Similarity=-0.023 Sum_probs=22.6
Q ss_pred eeeeccCCCcchHHHHHHHHHHHhh
Q 040800 2 FERERLNGHYGATAFVVGNSFSAVP 26 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~p 26 (223)
|.||.+.+++...+||--.++.|..
T Consensus 4 YvR~m~~~WW~k~~FYr~YMlRE~T 28 (126)
T PRK13603 4 YRQPVERYWWARRRSYLRFMLREIS 28 (126)
T ss_pred ccCCCCcchhhcCcHHHHHHHHHHh
Confidence 6899999999999999999999863
No 75
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.03 E-value=1.1e+02 Score=24.65 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.5
Q ss_pred cccCCC
Q 040800 197 MDVPPK 202 (223)
Q Consensus 197 ~~~~~~ 202 (223)
.+++||
T Consensus 168 gKRqpR 173 (227)
T PF05399_consen 168 GKRQPR 173 (227)
T ss_pred hccCCC
Confidence 334444
No 76
>PRK04987 fumarate reductase subunit C; Provisional
Probab=22.97 E-value=2.9e+02 Score=20.54 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=22.4
Q ss_pred eeeeccCCCcchHHHHHHHHHHHhh
Q 040800 2 FERERLNGHYGATAFVVGNSFSAVP 26 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~p 26 (223)
|.||...+++...+||--.++.|..
T Consensus 8 YvR~m~~~WW~k~~FYr~YMlRE~T 32 (130)
T PRK04987 8 YVRPMTPTWWKKLPFYRFYMLREAT 32 (130)
T ss_pred ccCCCCcchhhcCcHHHHHHHHHHh
Confidence 6799999999999999999998863
No 77
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=22.56 E-value=6e+02 Score=23.25 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Q 040800 52 FFYFVLLLFACMMLVESLMMIVASLVPNYLL 82 (223)
Q Consensus 52 ~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~ 82 (223)
+..+.+..+....+....+-+.+.+.+|++.
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~E 146 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQE 146 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHH
Confidence 3344444455555555666666667666554
No 78
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=22.09 E-value=1.4e+02 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhcccc-cCCCCCcc
Q 040800 85 ITGSGIQGMMILGGGFF-QLPNDIPK 109 (223)
Q Consensus 85 ~~~~~~~~~~~l~sG~~-~~~~~~p~ 109 (223)
.+.++++.|..+.+|++ .+...||.
T Consensus 238 T~~t~iflPlt~i~g~fGMN~~~~p~ 263 (292)
T PF01544_consen 238 TIVTAIFLPLTFITGIFGMNFKGMPE 263 (292)
T ss_dssp HHHHHHHHHHHHHTTSTTS-SS---S
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCCc
Confidence 34556678999999999 68888984
No 79
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=21.72 E-value=49 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040800 165 LAILFGMVVVYRLVFLG 181 (223)
Q Consensus 165 ~~iL~~~~v~~~~la~~ 181 (223)
.+.+++.++++..+..+
T Consensus 31 ci~~f~lav~~e~L~~~ 47 (144)
T PF04145_consen 31 CIGVFLLAVLYEFLKAL 47 (144)
T ss_dssp HHHHHHHHHHTTT----
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 80
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.69 E-value=3.8e+02 Score=22.79 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhcccc-cCCCCCcc
Q 040800 83 GIITGSGIQGMMILGGGFF-QLPNDIPK 109 (223)
Q Consensus 83 a~~~~~~~~~~~~l~sG~~-~~~~~~p~ 109 (223)
-..+.++++.|..+.+|++ .|.+.||.
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~~mPe 293 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLGGIPG 293 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCC
Confidence 3555666788999999998 68888997
No 81
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=21.60 E-value=1.3e+02 Score=25.62 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=10.9
Q ss_pred ccccccCCCCCchhhhhhhh
Q 040800 194 KAFMDVPPKPTTQIIENLEA 213 (223)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (223)
++.|+++++++.+.++++|.
T Consensus 41 ~r~~s~~~d~~~~~~~~~e~ 60 (324)
T COG3115 41 KRMKSKRDDDPYDEVADDEG 60 (324)
T ss_pred chhhhccCCChhhhhhcccc
Confidence 44566666666555444443
No 82
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.24 E-value=55 Score=23.15 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 040800 160 SKWVDLAILFGMVVVYRL 177 (223)
Q Consensus 160 ~~~~~~~iL~~~~v~~~~ 177 (223)
+.+.-++++++..+++.+
T Consensus 15 sl~~~~~~l~~~~~~l~l 32 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYL 32 (108)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 355555444444444433
No 83
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.14 E-value=2.7e+02 Score=19.20 Aligned_cols=28 Identities=7% Similarity=0.324 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 040800 165 LAILFGMVVVYRLVFLGIIKATEKLKPV 192 (223)
Q Consensus 165 ~~iL~~~~v~~~~la~~~l~~~~~~~~~ 192 (223)
+++..++.+...++.+.|-+.|+|.+|.
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4455555555556666666666655443
No 84
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=20.29 E-value=2.8e+02 Score=20.75 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 040800 166 AILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVP 200 (223)
Q Consensus 166 ~iL~~~~v~~~~la~~~l~~~~~~~~~~~~~~~~~ 200 (223)
++|.+|++.|. .+++..++.+|+..=.+.++.
T Consensus 15 l~lyaFwiFFa---gLi~YLrrEdkREGYPLe~d~ 46 (136)
T PF03967_consen 15 LVLYAFWIFFA---GLIYYLRREDKREGYPLESDD 46 (136)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHTTSSSTSSB-TT
T ss_pred HHHHHHHHHHH---HHHHHHhccccccCCCcccCC
Confidence 34555554444 444456666666544444443
No 85
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=20.19 E-value=6.5e+02 Score=22.70 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHH
Q 040800 67 ESLMMIVASLVPNYLLGIITGSGIQG 92 (223)
Q Consensus 67 ~~lg~~i~a~~~~~~~a~~~~~~~~~ 92 (223)
..+|.++|++..|...+..+.+++..
T Consensus 101 ~ll~a~~SA~l~N~tt~LlltPivl~ 126 (424)
T COG1055 101 VLLGALLSAFLDNDTTALLLTPIVLA 126 (424)
T ss_pred HHHHHHHHHHHcccceeehhhhHHHH
Confidence 45677888999998888888877643
Done!