Query 040800
Match_columns 223
No_of_seqs 122 out of 1189
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 19:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 54.9 1.9 6.5E-05 28.2 -0.6 16 187-202 38-53 (79)
2 1s4x_A Integrin beta-3; cell a 28.3 4.3 0.00015 25.6 -2.1 28 190-217 29-61 (67)
3 4h33_A LMO2059 protein; bilaye 22.7 2E+02 0.0068 20.1 5.8 18 118-135 44-61 (137)
4 2ks1_B Epidermal growth factor 21.4 1.2E+02 0.0042 17.1 4.1 7 180-186 32-38 (44)
5 2iub_A CORA, divalent cation t 20.1 1.2E+02 0.0039 25.2 4.5 26 84-109 306-332 (363)
6 4ev6_A Magnesium transport pro 19.5 79 0.0027 25.9 3.3 25 85-109 283-308 (339)
7 2nwl_A GLTPH, glutamate sympor 15.0 5.4E+02 0.018 21.8 8.4 64 15-78 43-108 (422)
8 2kv9_B Integrin beta-3; platel 13.5 26 0.00087 22.5 -0.9 14 189-202 36-49 (75)
9 1kf6_C Fumarate reductase 15 k 11.7 4.1E+02 0.014 18.7 5.8 73 2-74 7-83 (130)
10 2a9h_A Voltage-gated potassium 11.5 3.6E+02 0.012 19.2 4.8 71 117-202 84-154 (155)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.87 E-value=1.9 Score=28.17 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=8.2
Q ss_pred hhcccccccccccCCC
Q 040800 187 EKLKPVVKAFMDVPPK 202 (223)
Q Consensus 187 ~~~~~~~~~~~~~~~~ 202 (223)
-+.++..++..++|++
T Consensus 38 i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 38 IHDRKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334445555555554
No 2
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=28.29 E-value=4.3 Score=25.57 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=13.1
Q ss_pred ccccccccccCCCCCchhhh-----hhhhhhcc
Q 040800 190 KPVVKAFMDVPPKPTTQIIE-----NLEAIMIN 217 (223)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 217 (223)
++..+|..++|++..-+..+ +|..++.|
T Consensus 29 rrEyakFE~Er~~akw~~~~NPLYk~atttf~N 61 (67)
T 1s4x_A 29 RKEFAKFEEERARAKWDTANNPLYKEATSTFTN 61 (67)
T ss_dssp HHHHHHHHHHHTTTTTCSSSSTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccccccCCCCccCCcccccC
Confidence 34455555555543323333 34455544
No 3
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=22.69 E-value=2e+02 Score=20.06 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=10.8
Q ss_pred hhcHHHHHHHHHHHhhhC
Q 040800 118 YIVFHKYAYQGMFKNEFE 135 (223)
Q Consensus 118 ~isp~~y~~~~l~~~~~~ 135 (223)
|..-+.|++-.+...-|.
T Consensus 44 ~~~a~y~~~~T~tTvGyG 61 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYG 61 (137)
T ss_dssp HHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHcccCC
Confidence 445667777777654443
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.42 E-value=1.2e+02 Score=17.09 Aligned_cols=7 Identities=0% Similarity=-0.159 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 040800 180 LGIIKAT 186 (223)
Q Consensus 180 ~~~l~~~ 186 (223)
++.++++
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3333443
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.09 E-value=1.2e+02 Score=25.20 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhcccc-cCCCCCcc
Q 040800 84 IITGSGIQGMMILGGGFF-QLPNDIPK 109 (223)
Q Consensus 84 ~~~~~~~~~~~~l~sG~~-~~~~~~p~ 109 (223)
..+.++++.|..+.+|++ .|.+.||.
T Consensus 306 LTiit~IflP~T~IaGiyGMNf~~mPe 332 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGMNFEYMPE 332 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCc
Confidence 344556678899999998 68889997
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=19.46 E-value=79 Score=25.92 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcccc-cCCCCCcc
Q 040800 85 ITGSGIQGMMILGGGFF-QLPNDIPK 109 (223)
Q Consensus 85 ~~~~~~~~~~~l~sG~~-~~~~~~p~ 109 (223)
.+.++++.|..+.+|++ .|.+.||.
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~~mPe 308 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFSYLPL 308 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCSCCTT
T ss_pred HHHHHHHHHHHHHHhhccCcCCCCCC
Confidence 34455667888899998 68889996
No 7
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=15.04 E-value=5.4e+02 Score=21.81 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhhhhcccccc-cchhHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Q 040800 15 AFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLH-KGYQHFF-YFVLLLFACMMLVESLMMIVASLVP 78 (223)
Q Consensus 15 ~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~-~~~~~~~-~~~~~~~l~~~~~~~lg~~i~a~~~ 78 (223)
-..+++....+...++.++++..+..-..+++ ...++.. ......++....+..+|+.++.+.+
T Consensus 43 ~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 43 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44567777777888888999999999888874 4445542 3333445555556666777766654
No 8
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=13.52 E-value=26 Score=22.49 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=7.4
Q ss_pred cccccccccccCCC
Q 040800 189 LKPVVKAFMDVPPK 202 (223)
Q Consensus 189 ~~~~~~~~~~~~~~ 202 (223)
.++..++..++|++
T Consensus 36 DrREyaKFEkEr~~ 49 (75)
T 2kv9_B 36 DRKEFAKFEEERAR 49 (75)
T ss_dssp HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 9
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=11.70 E-value=4.1e+02 Score=18.69 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=0.0
Q ss_pred eeeeccCCCcchHHHHHHHHHHHh--hHHHHHHhhhhhhhhcccccccchhHHHHHHH--HHHHHHHHHHHHHHHHH
Q 040800 2 FERERLNGHYGATAFVVGNSFSAV--PYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVL--LLFACMMLVESLMMIVA 74 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~--p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~--~~~l~~~~~~~lg~~i~ 74 (223)
|.||...+++...+||--.++.|. ...+..+++...-...+.+=+.....|..+.- +.+++++...+..++-+
T Consensus 7 YvR~m~~~WW~k~~FYr~YMlRE~T~v~~~wf~l~Ll~Gl~~L~~G~~aw~~fv~fl~nPivvilniiaLaa~L~Ha 83 (130)
T 1kf6_C 7 YVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHT 83 (130)
T ss_dssp BCCCCCTTGGGSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhcCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=11.48 E-value=3.6e+02 Score=19.21 Aligned_cols=71 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 040800 117 YYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAF 196 (223)
Q Consensus 117 ~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~~~~~ 196 (223)
.+..-+.|++-.+...-|.|. ............+.++++..++...++.+.-...++.+++.+..
T Consensus 84 s~~~a~y~s~vTltTVGYGDi---------------~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~ 148 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDL---------------YPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHF 148 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSS---------------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------
T ss_pred cccceeheeeeeeecccCCCC---------------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccCCC
Q 040800 197 MDVPPK 202 (223)
Q Consensus 197 ~~~~~~ 202 (223)
+.+++|
T Consensus 149 ~r~~ek 154 (155)
T 2a9h_A 149 VRHSEK 154 (155)
T ss_dssp ------
T ss_pred Hhhhcc
Done!