Query 040800
Match_columns 223
No_of_seqs 122 out of 1189
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 19:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 37.2 29 0.0021 19.6 4.5 26 84-109 9-35 (64)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 23.7 60 0.0044 19.9 4.6 27 163-189 32-58 (100)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 17.1 66 0.0048 16.1 3.9 22 167-191 9-30 (37)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 16.7 1.4E+02 0.0099 19.5 5.8 26 2-27 7-32 (130)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 14.1 1.2E+02 0.0084 18.8 4.3 25 164-188 39-63 (107)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.1 1.1E+02 0.0081 16.7 4.8 29 162-190 5-33 (57)
7 d1xl4a2 f.14.1.1 (A:23-138) In 8.7 2.2E+02 0.016 17.3 6.3 21 116-136 59-79 (116)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 8.1 20 0.0015 22.0 -1.4 23 166-188 24-46 (91)
9 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.5 5.6E+02 0.041 19.1 8.5 63 15-77 32-96 (405)
10 d1itwa_ c.77.1.2 (A:) Monomeri 5.3 65 0.0047 27.3 -0.0 15 206-220 70-84 (740)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=37.21 E-value=29 Score=19.59 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhcccc-cCCCCCcc
Q 040800 84 IITGSGIQGMMILGGGFF-QLPNDIPK 109 (223)
Q Consensus 84 ~~~~~~~~~~~~l~sG~~-~~~~~~p~ 109 (223)
..+.+++..|..+.+|++ .+.+.+|.
T Consensus 9 lT~it~iflP~t~i~gifGMN~~~~P~ 35 (64)
T d2iuba2 9 LTIIATIFMPLTFIAGIYGMNFEYMPE 35 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 445667788889999998 46667775
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=23.68 E-value=60 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 040800 163 VDLAILFGMVVVYRLVFLGIIKATEKL 189 (223)
Q Consensus 163 ~~~~iL~~~~v~~~~la~~~l~~~~~~ 189 (223)
....+.+++.++...+.+.+.|+|+++
T Consensus 32 v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 444555566666777777777776543
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=17.15 E-value=66 Score=16.09 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 040800 167 ILFGMVVVYRLVFLGIIKATEKLKP 191 (223)
Q Consensus 167 iL~~~~v~~~~la~~~l~~~~~~~~ 191 (223)
.+.+|++.|..+.+ ..++.+++
T Consensus 9 ~ly~Fw~FFagLi~---YL~rE~~R 30 (37)
T d1eysh2 9 TIWAFWLFFFGLII---YLRREDKR 30 (37)
T ss_dssp HHHHHHHHHHHHHH---HHHHHTTS
T ss_pred HHHHHHHHHHHHHH---HHHhcccc
Confidence 44455555544443 34444444
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=16.72 E-value=1.4e+02 Score=19.49 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=23.0
Q ss_pred eeeeccCCCcchHHHHHHHHHHHhhH
Q 040800 2 FERERLNGHYGATAFVVGNSFSAVPY 27 (223)
Q Consensus 2 f~rE~~~g~Y~~~~y~lak~l~~~p~ 27 (223)
|.||.+.++....+||--.++-|...
T Consensus 7 YvR~m~~~WW~k~~FYr~YMlRE~T~ 32 (130)
T d1kf6c_ 7 YVRPMTSTWWKKLPFYRFYMLREGTA 32 (130)
T ss_dssp BCCCCCTTGGGSSHHHHHHHHHHHTH
T ss_pred ccCCCCchHhhcCcHHHHHHHHHHhH
Confidence 67999999999999999999998643
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=14.10 E-value=1.2e+02 Score=18.79 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 040800 164 DLAILFGMVVVYRLVFLGIIKATEK 188 (223)
Q Consensus 164 ~~~iL~~~~v~~~~la~~~l~~~~~ 188 (223)
...+.+++.++...+.+...++|++
T Consensus 39 ~~i~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 39 LYIITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3334444455555666666666554
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.14 E-value=1.1e+02 Score=16.75 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040800 162 WVDLAILFGMVVVYRLVFLGIIKATEKLK 190 (223)
Q Consensus 162 ~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 190 (223)
|+.++.+..+.++..++....+...++..
T Consensus 5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~~ 33 (57)
T d2h8pc1 5 WRAAGAATVLLVIVLLAGSYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666666666666565555555555544
No 7
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=8.73 E-value=2.2e+02 Score=17.28 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=15.2
Q ss_pred hhhhcHHHHHHHHHHHhhhCC
Q 040800 116 LYYIVFHKYAYQGMFKNEFEG 136 (223)
Q Consensus 116 l~~isp~~y~~~~l~~~~~~~ 136 (223)
-++..-+.|+++.+...-|.|
T Consensus 59 ~~~~~a~yfs~~T~tTvGYGD 79 (116)
T d1xl4a2 59 GSFTDAFFFSVQTMATIGYGK 79 (116)
T ss_dssp TCHHHHHHHHHHHHTTCCCSS
T ss_pred CCHHHHHHHHHHHHccCCCCc
Confidence 456678889998887766544
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.11 E-value=20 Score=22.03 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 040800 166 AILFGMVVVYRLVFLGIIKATEK 188 (223)
Q Consensus 166 ~iL~~~~v~~~~la~~~l~~~~~ 188 (223)
..++++.+++..+.+...|+|++
T Consensus 24 i~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 24 LMLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp HTTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHhhheeeecc
Confidence 34445556666667777777654
No 9
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.53 E-value=5.6e+02 Score=19.13 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhhhhcccccccc-hhHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 040800 15 AFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKG-YQHFF-YFVLLLFACMMLVESLMMIVASLV 77 (223)
Q Consensus 15 ~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~-~~~~~-~~~~~~~l~~~~~~~lg~~i~a~~ 77 (223)
.-.+++....+...++.++++..+..-..+++.. .++.. ......++....+..+|..++.+.
T Consensus 32 l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~ 96 (405)
T d2nwwa1 32 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLF 96 (405)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467888888888999999999999888777532 23333 222333444455556666666553
No 10
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=5.30 E-value=65 Score=27.26 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=0.0
Q ss_pred hhhhhhhhhhccCCC
Q 040800 206 QIIENLEAIMINLPN 220 (223)
Q Consensus 206 ~~~~~~~~~~~~~~~ 220 (223)
+.+..|+++.|||||
T Consensus 70 el~~~p~ANIIKLPN 84 (740)
T d1itwa_ 70 KLATTPDANIIKLPN 84 (740)
T ss_dssp HHTTSTTCEEEECCC
T ss_pred HHhCCCCCCeeeCCc
Done!