BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040801
(323 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 163/309 (52%), Positives = 190/309 (61%), Gaps = 49/309 (15%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPL-INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQI 59
MA PL LHH R P + PL NNNNINSQ Q H CL+SLEKC+TM +LKQI
Sbjct: 1 MATPLSLHH-PRPPLPTEYPLPLRNAATTANNNNINSQIQLHPCLLSLEKCTTMSQLKQI 59
Query: 60 HAQMLRTSLFFDP---------CADY------HVRLVFSQISNPTIYTCNSIVRGYTNKN 104
HAQMLRT LF DP CA + + RLVF+QI NPT +TCNSI+RGYTNKN
Sbjct: 60 HAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKN 119
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLI 164
L +A LFY M++QGL PDRF FPSLFKSC + KQLH + K G ASD+++ NTL+
Sbjct: 120 LPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLM 179
Query: 165 NMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAV 196
NMYS+C CL D P EAIK+F RMEI +VKPN +
Sbjct: 180 NMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEI 239
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
TLVNVLTA AR+RDL T K+VHK +DE+G H L + LMD YCKC A DLF KM
Sbjct: 240 TLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKM 299
Query: 257 ----LFPWN 261
LF WN
Sbjct: 300 PEKNLFCWN 308
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 33/219 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++ N ++ + +++ Y +L HEA + M + + P+ ++ +CA
Sbjct: 192 RKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARS 251
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------------------- 172
D+ KQ+H + G+ + L + L+++Y C C
Sbjct: 252 RDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMI 311
Query: 173 ---LDQPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
++ D EA+ +F M++ VK + VT+ ++L A L K +H +++
Sbjct: 312 NGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIE 371
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V L T L+D Y KC + A +F +M P + W
Sbjct: 372 VDVALGTALVDMYAKCGSIESAMRVFQEM--PEKDVMTW 408
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/257 (54%), Positives = 161/257 (62%), Gaps = 48/257 (18%)
Query: 53 MRELKQIHAQMLRTSLFFDP---------------CADYHVRLVFSQISNPTIYTCNSIV 97
M +LKQIHAQMLRT LFFDP + + RLVFSQI NPT YTCNSI+
Sbjct: 1 MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS 157
RG T+KNLH EA LFY EM+VQGLIPDR+ FPSLFKSC + KQ+H + K G ASD+
Sbjct: 61 RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDT 120
Query: 158 FLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYR-MEI 188
+ NTL+NMYS+C CL DQP+EA+++F R M+
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
ENVKPN VTLVNVLTA ARARDL VKR+H+ +DE GF HV L T LMD YCKC V
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL 240
Query: 249 AWDLFVKM----LFPWN 261
A DLF K LF WN
Sbjct: 241 ARDLFDKAQEKNLFSWN 257
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R +F + +++ N ++ G+ + + EA L + EM +G+ D+ SL +C
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
+ + K LH+ K + D L L++MY+ C ++
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTAL 360
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESG 225
Q + A++ F M I+ VKP+A+T V VL A + A + + + D G
Sbjct: 361 ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYG 420
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E L+D + ++ A +L M
Sbjct: 421 IQPTIEHYGGLVDILGRAGRIAEAEELIKSM 451
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 101/265 (38%), Gaps = 47/265 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTIYTC 93
+ C E KQIH + D A R VF ++ + T+ +
Sbjct: 95 FKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSW 154
Query: 94 NSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAI 149
+++ + + +EA LF M + + P+ ++ +CA D+ + K++H
Sbjct: 155 ATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYID 214
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIK 181
+ G L+ L+++Y C C+ +EA+
Sbjct: 215 EHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALL 274
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M+ + +K + VT+ ++L A L K +H + + V L T L+D Y
Sbjct: 275 LFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYA 334
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266
KC + A +F +M P + W
Sbjct: 335 KCGSIETAIQVFHEM--PEKDVMTW 357
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 133/279 (47%), Gaps = 77/279 (27%)
Query: 63 MLRTSLFFDP---------CADY------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
MLRT LF DP CA + + RLVF+QI NPT +TCNSI+RGYTNKNL
Sbjct: 1 MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMY 167
+A LFY M++QGL PDRF FPSLFKSC + KQLH + K G ASD+++ NTL+NMY
Sbjct: 61 QAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMY 120
Query: 168 SSCWCL----------------------------DQPDEAIKIFYRMEI----------- 188
S+C CL D P EAIK+F RMEI
Sbjct: 121 SNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMI 180
Query: 189 ---------------------ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
VK + VT+ ++L A L K +H +++
Sbjct: 181 NGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIE 240
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V L T L+D Y KC + A +F +M P + W
Sbjct: 241 VDVALGTALVDMYAKCGSIESAMRVFQEM--PEKDVMTW 277
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 162/343 (47%), Gaps = 60/343 (17%)
Query: 1 MAAPLP-LHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQI 59
MA P P L R+ +L + N I L+N + + H L +++CS ++LKQI
Sbjct: 1 MAIPNPCLVSLPRSHSLPTPNPNSITLNN------DRYFANHPTLSLIDQCSETKQLKQI 54
Query: 60 HAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
HAQMLRT LFFDP + DY + VF QI +P +YT N+++R Y +
Sbjct: 55 HAQMLRTGLFFDPFSASRLITAAALSPFPSLDY-AQQVFDQIPHPNLYTWNTLIRAYASS 113
Query: 104 NLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFL 159
+ H++ L + M+ Q PD+F FP L K+ +++ + K H IK L SD F+
Sbjct: 114 SNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFI 173
Query: 160 HNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENV 191
N+LI+ Y+ C L P+EA+++F ME +NV
Sbjct: 174 LNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV 233
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
KPN +T+V VL+A A+ D + VH ++ + + L ++D Y KC V A
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKR 293
Query: 252 LFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKK 294
LF KM P + W + VG +G + A I P +
Sbjct: 294 LFDKM--PEKDIVSWT-TMLVG-YAKIGEYDAAQGIFDAMPNQ 332
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y C +P EA+++F+ +++ + KP+ VTLV+ L+A A+ + +H
Sbjct: 338 NALISAYEQC---GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHV 394
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + G + L T+L+D YCKC + +A +F K +F W+
Sbjct: 395 YIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWS 440
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 152/315 (48%), Gaps = 58/315 (18%)
Query: 1 MAAPLP-LHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQI 59
MA P P L R+ +L + N I L+N + + H L +++CS ++LKQI
Sbjct: 1 MAIPNPCLVSLPRSHSLPTPNPNSITLNN------DRYFANHPTLSLIDQCSETKQLKQI 54
Query: 60 HAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
HAQMLRT LFFDP + DY + VF QI +P +YT N+++R Y +
Sbjct: 55 HAQMLRTGLFFDPFSASRLITAAALSPFPSLDY-AQQVFDQIPHPNLYTWNTLIRAYASS 113
Query: 104 NLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFL 159
+ H++ L + M+ Q PD+F FP L K+ +++ + K H IK L SD F+
Sbjct: 114 SNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFI 173
Query: 160 HNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENV 191
N+LI+ Y+ C L P+EA+++F ME +NV
Sbjct: 174 LNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV 233
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
KPN +T+V VL+A A+ D + VH ++ + + L ++D Y KC V A
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKR 293
Query: 252 LFVKMLFPWNNYGQW 266
LF KM P + W
Sbjct: 294 LFDKM--PEKDIVSW 306
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 153/319 (47%), Gaps = 68/319 (21%)
Query: 39 QAHFCLVS-LEKCSTMRELKQIHAQMLRTSL---------FFDPCAD------YHVRLVF 82
Q ++ ++S LEKC TM+ELKQIH+ M+ TS+ D CA+ + R VF
Sbjct: 3 QNYYTVMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVF 62
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYV 140
QI+ T+Y NS+++GY N A Y EM +G PD F FP + K C+ D+ V
Sbjct: 63 DQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLV 122
Query: 141 EKQ-LHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------------- 173
Q +H++ +K G D + + L+NMY SC L
Sbjct: 123 YGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFV 182
Query: 174 --DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF----- 226
DQP EA+++F ME E V+PN +T+ L A AR RD+ T K VH + + GF
Sbjct: 183 NNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDT 242
Query: 227 --WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN----YGQWAMSATVGPQG 276
+V L T +MD Y KC + A +LF KM L WN+ Y Q+ G +
Sbjct: 243 NSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGR----GAEA 298
Query: 277 LVGRHSTAHQISGPCPKKA 295
L R +++G P KA
Sbjct: 299 L--RLFVDMEMAGFVPNKA 315
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 54/264 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPTI 90
L+ CS + L + +H ++++T D C D + L VF I +
Sbjct: 112 LKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNV 171
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CADIYVEKQLHSQ 147
S++ G+ N + EA + +M +G+ P+ + + C DI+ K +H +
Sbjct: 172 VAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDR 231
Query: 148 AIKFGLAS-------DSFLHNTLINMYSSCWCL--------------------------- 173
+ G + L +++MY+ C L
Sbjct: 232 LRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQ 291
Query: 174 -DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ EA+++F ME+ PN T ++V++A T + +H + F V +
Sbjct: 292 YGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAI 351
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
T LMD Y K A +F K+
Sbjct: 352 GTALMDMYAKAGDADTALKIFSKL 375
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + NS++ Y+ EA + +M + G +P++ F S+ +C +
Sbjct: 268 RNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHM 327
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ LH++A++ + L++MY+ D A+KIF ++ ++V
Sbjct: 328 GFRSTGRSLHARALRASFHEFVAIGTALMDMYAKA---GDADTALKIFSKLRKKDVMA-W 383
Query: 196 VTLVNVLTARARARDLRTVKR 216
T+++ L + + ++ V R
Sbjct: 384 TTMISGLAIQGKGKEALNVFR 404
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 147/291 (50%), Gaps = 53/291 (18%)
Query: 22 PLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA------- 74
P I+L N + N N ++ H L +++KCS+ ++LK++HA+MLRT LFFDP +
Sbjct: 7 PSISLQNFSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTA 66
Query: 75 ---------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPD 124
DY R +F QI P +YT N+++R Y + + ++F+ + +++ + +P+
Sbjct: 67 SALSSFSTLDY-ARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPN 125
Query: 125 RFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------ 175
+F FP + K+ +++ V +H AIK D ++ N+L+ Y +C L
Sbjct: 126 KFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFK 185
Query: 176 ----------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
P++A+++F +ME ENV PN+VT+V VL+A A+ DL
Sbjct: 186 GISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEF 245
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPW 260
+ V ++ G + L ++D Y KC V A LF +M +F W
Sbjct: 246 GRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSW 296
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P EA+ IF +++ + KP+ VTLV+ L+A A+ + +H
Sbjct: 328 NVLISAYEQN---GKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHV 384
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
+ G + L ++L+D Y KC + +A ++F + + SA + G+ G
Sbjct: 385 YIKREGIVLNCHLISSLVDMYAKCGSLEKALEVF----YSVEERDVYVWSAMIAGLGMHG 440
Query: 280 RHSTA 284
R A
Sbjct: 441 RGKAA 445
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 150/316 (47%), Gaps = 63/316 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRT---------SLFFDPCADY------HVRLVFSQISNPTIY 91
L KC +MRELK++H ++ T S D C D + LV QI NP++Y
Sbjct: 11 LAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNPSVY 70
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQA 148
NS++RG+ N + + L Y +MI G PD F FP + K+C AD K +HS
Sbjct: 71 IWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCI 130
Query: 149 IKFGLASDSFLHNTLINMYSSC---------------W------CL-------DQPDEAI 180
+K G +D++ L++MY SC W CL +QP EA+
Sbjct: 131 VKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEAL 190
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF-------WSHVELK 233
K+F M NV+PN +T+VN L A A +RD+ T + VH+ + ++G+ S++ L
Sbjct: 191 KVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILA 250
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI------ 287
T +++ Y KC + A DLF KM P N W ++ + RH A +
Sbjct: 251 TAILEMYAKCGRLKIARDLFNKM--PQRNIVSW--NSMINAYNQYERHQEALDLFFDMWT 306
Query: 288 SGPCPKKAHKLFFFSM 303
SG P KA L S+
Sbjct: 307 SGVYPDKATFLSVLSV 322
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F+++ I + NS++ Y H EA + +M G+ PD+ F S+ CA
Sbjct: 267 RDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQ 326
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ + + +H+ +K G+A+D L L++MY+ + A KIF ++ ++V
Sbjct: 327 CALALGQTVHAYLLKTGIATDISLATALLDMYAKT---GELGNAQKIFSSLQKKDV 379
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 39/224 (17%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ CAD L VF I + ++ GY N +EA + +M + P+
Sbjct: 148 MYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEIT 207
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLA-------SDSFLHNTLINMYSSCWCL---- 173
+ +CA DI + +H + K G S+ L ++ MY+ C L
Sbjct: 208 MVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIAR 267
Query: 174 ------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
++ EA+ +F+ M V P+ T ++VL+ A
Sbjct: 268 DLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQC 327
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L + VH + ++G + + L T L+D Y K + A +F
Sbjct: 328 ALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIF 371
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 143/296 (48%), Gaps = 53/296 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------------CADYHVRLVFSQISNPTI 90
+++C+ +LKQIHA MLRTS F DP C Y + VF+QI P +
Sbjct: 79 IDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIY-AKNVFNQIPQPNL 137
Query: 91 YTCNSIVRGYTNKNLHHEAFL-FYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
Y N+++RGY + + ++FL F H + P++F FP LFK+ + + V LH
Sbjct: 138 YCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHG 197
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDE 178
IK L+SD F+ N+LIN Y S D PD+
Sbjct: 198 MVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDK 257
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ +F ME+++VKPN +T+V+VL+A A+ DL + + ++ +GF H+ L ++D
Sbjct: 258 ALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLD 317
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKK 294
Y KC ++ A DLF KM + W + + +G + AH I P K
Sbjct: 318 MYVKCGCINDAKDLFNKM--SEKDIVSW--TTMLDGHAKLGNYDEAHCIFDAMPHK 369
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P A+ +F+ M++ ++ KP+ VTL+ L A A+ + +H
Sbjct: 375 NALISAYEQN---GKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHV 431
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQ 275
+ + + L T+L+D Y KC +++A ++F K ++ W SA +G
Sbjct: 432 YIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVW--------SAMIGAL 483
Query: 276 GLVGRHSTA 284
+ G+ A
Sbjct: 484 AMYGQGKAA 492
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 148/315 (46%), Gaps = 60/315 (19%)
Query: 39 QAHFCLVS-LEKCSTMRELKQIHAQMLRTSL---------FFDPCAD------YHVRLVF 82
Q+++ ++S LEKC TM+ELKQIH+ M++TS+ D CA+ + R VF
Sbjct: 3 QSYYTILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVF 62
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYV 140
Q T+Y NS+++GY N A Y EM +G PD F FP + K C+ D+ V
Sbjct: 63 DQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLV 122
Query: 141 EKQ-LHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------------- 173
Q +H++ +K G D + + L+NMY SC L
Sbjct: 123 YGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFV 182
Query: 174 --DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF----- 226
DQP EA+++F ME E V+PN +T+ L A AR RD+ T K V + + G
Sbjct: 183 NNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHT 242
Query: 227 --WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGR 280
+V L T +MD Y KC + A +LF KM L WN+ G + L R
Sbjct: 243 NSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEAL--R 300
Query: 281 HSTAHQISGPCPKKA 295
+++G P KA
Sbjct: 301 LFVDMELAGFVPNKA 315
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 55/274 (20%)
Query: 38 YQAHFCL-VSLEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHVRL- 80
Y HF L+ CS + L + +H ++++T D C D + L
Sbjct: 102 YPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLK 161
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CAD 137
VF I + S++ G+ N + EA + +M +G+ P+ + + C D
Sbjct: 162 VFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRD 221
Query: 138 IYVEKQLHSQAIKFGLAS-------DSFLHNTLINMYSSCWCL----------------- 173
I+ K + + + GL + L +++MY+ C L
Sbjct: 222 IHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVV 281
Query: 174 -----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+ EA+++F ME+ PN T ++V+ A R T + +H V
Sbjct: 282 WNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVL 341
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ F V + T LMD Y K A +F K+
Sbjct: 342 KANFHEFVAIGTALMDMYAKSGDADTALKIFSKL 375
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + NS++ ++ EA + +M + G +P++ F S+ ++C +
Sbjct: 268 RNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVIRACTHL 327
Query: 139 YVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ LH++ +K + L++MY+ D A+KIF ++ ++V
Sbjct: 328 RFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKS---GDADTALKIFSKLRKKDVMA-W 383
Query: 196 VTLVNVLTARARARDLRTVKR 216
T+++ L + + ++ V R
Sbjct: 384 TTMISGLAIQGKGKEALNVFR 404
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 137/283 (48%), Gaps = 64/283 (22%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY------HVRLVFSQISNPTIY 91
LEKC TM ELK++H M+ TS+ D CA + + VF+QI P++Y
Sbjct: 12 LEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLY 71
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQA 148
NS+++GY+ EA Y EM +G PD F FP + K+C+ + + + +H+
Sbjct: 72 IWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCI 131
Query: 149 IKFGLASDSFLHNTLINMYSSC---------------W-----------CL--DQPDEAI 180
+K G D + L+ MY++C W C+ D P EA+
Sbjct: 132 VKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAV 191
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG---FWS----HVELK 233
+++ ME+ +V PN +T+VNVL A AR+RDL + VH + G F S +V L
Sbjct: 192 RVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILA 251
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWNN-------YGQ 265
T ++D Y KC + A DLF KM L WN+ YGQ
Sbjct: 252 TAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQ 294
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 43/229 (18%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D L VF I + S++ G + + EA Y +M + + P+
Sbjct: 149 MYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEIT 208
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNT---------LINMYSSCWCL-- 173
++ +CA D+ + +H + + GL D F N+ +++MY+ C L
Sbjct: 209 MVNVLVACARSRDLNAGRWVHDRTGQMGL--DPFQSNSNFNVILATAIVDMYAKCGSLKT 266
Query: 174 --------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
Q +EA+ +F M I P+ T + V+ A A
Sbjct: 267 ARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAH 326
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L + + +H V ++ + T L+D Y K RA +F ++
Sbjct: 327 LGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSEL 375
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F+++ + + NS++ Y +EA + +M + G PD+ F + +CA +
Sbjct: 268 RDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHL 327
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ LH+ K L D+ + L++MY+ + A ++F ++ ++V
Sbjct: 328 GALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKS---GDAERAQQVFSELQKKDV 380
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 144/307 (46%), Gaps = 56/307 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY------HVRLVFSQISNPTIYTCNSIVRGY 100
L +C +MRELK++ +L S D C D + LVF QI P++Y NS++RG+
Sbjct: 11 LARCKSMRELKKLRGLIL--SKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMIRGF 68
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDS 157
N + + L Y ++I G PD F FP + K+C AD K +H +K G +D+
Sbjct: 69 VNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADA 128
Query: 158 FLHNTLINMYSSC---------------W------CL-------DQPDEAIKIFYRMEIE 189
+ L++MY SC W CL +QP EA+K+F M
Sbjct: 129 YTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHC 188
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF-------WSHVELKTTLMDAYCK 242
V+PN +T+VN L AR+RD T + VH+ + ++G+ S++ L T +++ Y K
Sbjct: 189 GVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAK 248
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI------SGPCPKKAH 296
C A DLF KM P N W ++ + RH A + SG P KA
Sbjct: 249 CGSFKIARDLFNKM--PQRNIVSW--NSMINAYNQYERHKEALDLFFDMWTSGIYPDKAT 304
Query: 297 KLFFFSM 303
L S+
Sbjct: 305 FLSVLSV 311
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 43/226 (19%)
Query: 69 FFDPCADYHVRL-VFSQIS--NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
+ CAD L VF I N +TC ++ GY N N +EA + +M G+ P+
Sbjct: 137 MYVSCADMKSGLKVFDNIPIWNVVAWTC--LIAGYVNNNQPYEALKVFKDMSHCGVEPNE 194
Query: 126 FMFPSLFKSCA---DIYVEKQLHSQAIKFGLA-------SDSFLHNTLINMYSSCWCL-- 173
+ CA D + +H K G S+ L ++ MY+ C
Sbjct: 195 ITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKI 254
Query: 174 --------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
++ EA+ +F+ M + P+ T ++VL+ A
Sbjct: 255 ARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAH 314
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L + VH + ++G + + L T L+D Y K + A +F
Sbjct: 315 LCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIF 360
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C + + R +F+++ I + NS++ Y H EA + +M G+ PD+
Sbjct: 245 MYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKAT 304
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
F S+ CA + + + +H+ K G+ +D L L++MY+ L A KIF
Sbjct: 305 FLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGS---AQKIFS 361
Query: 185 RMEIENV 191
++ +V
Sbjct: 362 SLQKRDV 368
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 130/268 (48%), Gaps = 58/268 (21%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY------HVRLVFSQISNPTIY 91
LEKC TM ELK++H M+ TS+ D CA + + VF+QI P++Y
Sbjct: 12 LEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLY 71
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQA 148
NS+++GY+ EA Y EM +G PD F FP + K+C+ + + + +H+
Sbjct: 72 IWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCI 131
Query: 149 IKFGLASDSFLHNTLINMYSSC---------------W-----------CL--DQPDEAI 180
+K G D + L+ MY++C W C+ D P EA+
Sbjct: 132 VKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAV 191
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG---FWS----HVELK 233
+++ ME+ +V PN +T+VNVL A AR+RDL + VH + G F S +V L
Sbjct: 192 RVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILA 251
Query: 234 TTLMDAYCKCKF-----VSRAWDLFVKM 256
T ++D Y KC + + A DLF M
Sbjct: 252 TAIVDMYAKCAYNQYGQANEALDLFSDM 279
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 17/203 (8%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D L VF I + S++ G + + EA Y +M + + P+
Sbjct: 149 MYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEIT 208
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNT---------LINMYSSCWC--L 173
++ +CA D+ + +H + + GL D F N+ +++MY+ C
Sbjct: 209 MVNVLVACARSRDLNAGRWVHDRTGQMGL--DPFQSNSNFNVILATAIVDMYAKCAYNQY 266
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
Q +EA+ +F M I P+ T + V+ A A L + + +H V ++ +
Sbjct: 267 GQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIG 326
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
T L+D Y K RA +F ++
Sbjct: 327 TALVDMYAKSGDAERAQQVFSEL 349
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 29/255 (11%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------ 75
+ ++S+ A L L++CS M EL+QIH QML+T L D CA
Sbjct: 9 TSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSL 68
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+ R VF +I P + N+++RGY+N EA L YH M+ + + + FP L K+C
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 136 ADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------DQPD-EAIK 181
+ + +Q+H+ IK G S+ + N+L+N+YS + DQ D EA+
Sbjct: 129 SSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALN 188
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F+RM+ +K + V LV+ L A A L K +H + + L L+D Y
Sbjct: 189 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 248
Query: 242 KCKFVSRAWDLFVKM 256
KC + A ++F KM
Sbjct: 249 KCGDLEEAIEVFRKM 263
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 51/273 (18%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA------- 74
N+N N+ + L L KC+++RELKQ+ A ++T L F + C+
Sbjct: 15 NSNSNTTHP----LSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTS 70
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
H +F QI P I N++ RGY + AF + +++ GL PD + FPSL K+
Sbjct: 71 MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130
Query: 135 CAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------- 174
CA + +QLH AIK GL+ + ++ TLINMY++C +D
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+P+EA+ +F ++ N+KP VT+++VL++ A L K +H+ V +
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+GF V++ T L+D Y KC + A +F M
Sbjct: 251 NGFNRFVKVDTALIDMYAKCGSLDDAVCVFENM 283
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 124/257 (48%), Gaps = 48/257 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------------CADYHVRLVFSQISNPTI 90
LE+C T+R+L +IHA +++T L P DY V +F QI P
Sbjct: 31 LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVS-IFRQIDEPDS 89
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
N ++RG+T K HEA L + EM + PD F FP + K C+ + +Q+H+
Sbjct: 90 PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+K G S F+ NTLI+MY++C ++ +E
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F+ M +++ + VTLV+VLTA R DL + +++ V+E G + L T+L+D
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDM 269
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC V A LF +M
Sbjct: 270 YAKCGQVDTARRLFDQM 286
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 131/309 (42%), Gaps = 62/309 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L+ CS ++ L +QIHA +++ + C + V R VF ++S +
Sbjct: 131 LKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNV 190
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
T NS+ GYT E +HEM+ + D S+ +C AD+ + + ++
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRY 250
Query: 148 AIKFGLASDSFLHNTLINMYSSCW-------CLDQPD---------------------EA 179
+ GL + L +L++MY+ C DQ D EA
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREA 310
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F+ M+ N+ PN +T+V++L++ A L T K VH + + V L T LMD
Sbjct: 311 LDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDF 370
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLF 299
Y KC V + ++F KM P N W TV QGL S KKA + F
Sbjct: 371 YAKCGSVESSIEVFGKM--PVKNVLSW----TVLIQGLA---------SNGQGKKALEYF 415
Query: 300 FFSMLKKVH 308
+ + K V
Sbjct: 416 YLMLEKNVE 424
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 152/333 (45%), Gaps = 66/333 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRT-----------SLFFDPCADYH-------VRLVFSQISNP 88
L KC T+ + K HA +L T S D C D H L+F QI +P
Sbjct: 11 LPKCKTLLQFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFRQIHSP 70
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLH 145
+Y NS+++GY N + Y +M+ G PD F FP + K+C+ IY + K +H
Sbjct: 71 NVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVH 130
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC---------------W------CL-------DQPD 177
S +K G ++ ++ L+NMY C W CL DQP
Sbjct: 131 SCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPR 190
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF-------WSHV 230
EA+++F M V+ N VT+VN L A AR RD+ T + VH+ V ++G+ S+V
Sbjct: 191 EALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNV 250
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI--- 287
L T +++ Y KC +++ A +LF KM P N W + + R++ A +
Sbjct: 251 ILATAIVEMYAKCGWLNVARELFNKM--PERNIVAW--NCMINAYNQYERYNEALGLFFY 306
Query: 288 ---SGPCPKKAHKLFFFSMLKKVHVPGVLIQVH 317
+G CP KA L S+ + V + VH
Sbjct: 307 MLANGFCPDKATFLSVLSVCARRCVLALGETVH 339
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 38/211 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF +I + ++ GY + EA + EM G+ + + +CA D
Sbjct: 164 VFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRD 223
Query: 138 IYVEKQLHSQAIKFG-----LASDS--FLHNTLINMYSSC-------------------- 170
+ + +H + K G AS+S L ++ MY+ C
Sbjct: 224 VDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVA 283
Query: 171 W-CL-------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
W C+ ++ +EA+ +F+ M P+ T ++VL+ AR L + VH +
Sbjct: 284 WNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLL 343
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+S + L T L+D Y K + A +F
Sbjct: 344 KSNMAKDIALATALLDMYAKNGELGSAQKIF 374
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R +F+++ I N ++ Y ++EA + M+ G PD+ F S+ CA
Sbjct: 270 RELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARR 329
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
+ + + +H+ +K +A D L L++MY+
Sbjct: 330 CVLALGETVHAYLLKSNMAKDIALATALLDMYA 362
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 148/303 (48%), Gaps = 59/303 (19%)
Query: 16 LSSDNSPLINLDNINNNNI-----NSQYQAHFCLVSL-EKCSTMRELKQIHAQMLRTSLF 69
++S NSPL+++ N++I +H +SL ++C+ ++ LK++HA +LR+ LF
Sbjct: 1 MASLNSPLVSIPLRPNHSILTVPNGRPVTSHSQTLSLIDQCTNLKHLKELHATILRSGLF 60
Query: 70 FDP----------------CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFY 113
F P DY R VF +IS P +YT N+++R + + + L +
Sbjct: 61 FHPYNASKLFSVAALSSFSSLDY-ARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIF 119
Query: 114 HEMIVQGL-IPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSS 169
M+ P++F FP + K+ A + + +H AIK L SD F+ N+LI+ Y+S
Sbjct: 120 IRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYAS 179
Query: 170 CWCLDQ----------------------------PDEAIKIFYRMEIENVKPNAVTLVNV 201
C LD PD+A+++F M+ ENV+PN VT+V V
Sbjct: 180 CGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGV 239
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----L 257
L+A A+ DL +RV ++ +G ++ + ++D Y K + A LF KM +
Sbjct: 240 LSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDI 299
Query: 258 FPW 260
F W
Sbjct: 300 FSW 302
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P EA+ IF+ +++ + KP+ VTLV+ L+A A+ + +H
Sbjct: 334 NVLISAYEQD---GKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHV 390
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQ 275
+ + + L T+L+D Y KC V +A D+F + +F W SA +
Sbjct: 391 YIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVW--------SAMIAGL 442
Query: 276 GLVGRHSTA 284
+ GR A
Sbjct: 443 AMHGRGRAA 451
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 32/159 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA 136
R VF + I N ++ Y EA +HE+ + + PD S +CA
Sbjct: 318 ARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACA 377
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC----------WCLDQPD------ 177
I + +H K + + L +LI+MYS C + +D+ D
Sbjct: 378 QLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSA 437
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
AI +F+ M+ V+PNAVT N+L A
Sbjct: 438 MIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCA 476
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 49/280 (17%)
Query: 25 NLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------ 72
N N N N++ H + +++CS++R+LKQ HA M+RT +F DP
Sbjct: 17 NFSNPNQPTTNNERSRH-TISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAAL 75
Query: 73 ---CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFM 127
+ + R VF +I P +T N+++R Y + + + +M+ P+++
Sbjct: 76 SSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYT 135
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------- 175
FP L K+ A++ + + LH AIK + SD F+ N+LI+ Y SC LD
Sbjct: 136 FPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 195
Query: 176 -------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
PD+A+++F +ME E+VK + VT+V VL+A A+ RDL +R
Sbjct: 196 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR 255
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V ++E+ ++ L ++D Y KC + A LF M
Sbjct: 256 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 295
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 41/197 (20%)
Query: 49 KCSTMRELKQIHAQMLRT-----SLFFDPCA---DYHV-RLVFSQISNPTIYTCNSIVRG 99
KC ++ + K++ M + D A DY R V + + I N+++
Sbjct: 281 KCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISA 340
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADI---YVEKQLHSQAIKFGLAS 155
Y +EA L +HE+ +Q I ++ S +CA + + + +HS K G+
Sbjct: 341 YEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKM 400
Query: 156 DSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRME 187
+ ++ + LI+MYS C L++ EA+ +FY+M+
Sbjct: 401 NFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQ 460
Query: 188 IENVKPNAVTLVNVLTA 204
NVKPN VT NV A
Sbjct: 461 EANVKPNGVTFTNVFCA 477
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P+EA+ +F+ ++++ N+K N +TLV+ L+A A+ L + +H
Sbjct: 335 NALISAYEQN---GKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHS 391
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQ 275
+ ++G + + + L+ Y KC + +A ++F + +F W SA +G
Sbjct: 392 YIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW--------SAMIGGL 443
Query: 276 GLVGRHSTA 284
+ G S A
Sbjct: 444 AMHGCGSEA 452
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 54/267 (20%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------------FFDPCA--DYHVRLVFSQISNPTI 90
++C +M+ L+Q+HA +++T L C DY +R VF +I NP
Sbjct: 58 FKQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALR-VFGKIENPDG 116
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
+ N+++RG +AF FY M V+G + D F + L K C + + KQ+H
Sbjct: 117 FLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCN 176
Query: 148 AIKFGLASDSFLHNTLINMYS-----------------------------SCWCLDQPDE 178
+K GL F+ NTL++MY + +C + E
Sbjct: 177 VLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYC-GRYKE 235
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
AI++F+RM +KP+ T V L+A A +L +RVH C+D +G + V + +L+D
Sbjct: 236 AIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLID 295
Query: 239 AYCKCKFVSRAWDLFVKM----LFPWN 261
Y KC V A+++F KM + WN
Sbjct: 296 MYAKCGVVEAAYEIFNKMKGRNIVSWN 322
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 49/258 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTI 90
++KC+ + LKQ+HA MLRT LFFDP CA DY + VF QI P +
Sbjct: 37 IDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACK-VFDQIPRPNL 95
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADI---YVEKQLHS 146
YT N+++R + + + L + +M+ + P+ + FP + K+ ++ + +H
Sbjct: 96 YTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHG 155
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDE 178
+K SD F+ N+LI+ YSS LD P+E
Sbjct: 156 MVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEE 215
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++F RM++EN +PN VT+V VL+A A+ DL + ++ +G ++ L ++D
Sbjct: 216 ALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLD 275
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC + A LF KM
Sbjct: 276 MYVKCGSLEDARRLFDKM 293
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVF 82
+ Y F + + + S++ + IH +++ S F+ D LVF
Sbjct: 130 NSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVF 189
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIY 139
S+I I + NS++ G+ EA + M ++ P+R + +CA D+
Sbjct: 190 SKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE 249
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
+ + G+ + L N +++MY C L ++A ++F +ME +++ V+
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSL---EDARRLFDKMEEKDI----VSWT 302
Query: 200 NVLTARARARDLRTVKRV 217
++ A+ D +RV
Sbjct: 303 TMIDGYAKVGDYDAARRV 320
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P EA+ IF +++ +N KPN VTL + L A A+ + +H
Sbjct: 333 NALISSYQQN---GKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHV 389
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + G + + T+L+D Y KC + +A ++F + +F W+
Sbjct: 390 YIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWS 435
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 41/197 (20%)
Query: 49 KCSTMRELKQIHAQMLRTSLF--------FDPCADYHV-RLVFSQISNPTIYTCNSIVRG 99
KC ++ + +++ +M + + DY R VF + I N+++
Sbjct: 279 KCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISS 338
Query: 100 YTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLAS 155
Y EA + E+ + + P+ S +CA + + +H K G+
Sbjct: 339 YQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398
Query: 156 DSFLHNTLINMYSSCWCLDQPDE----------------------------AIKIFYRME 187
+ + +LI+MYS C L++ E AI +F +M+
Sbjct: 399 NFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQ 458
Query: 188 IENVKPNAVTLVNVLTA 204
VKPNAVT N+L A
Sbjct: 459 ETKVKPNAVTFTNLLCA 475
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 46/256 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC--------------ADY-HVRLVFSQISNPTIY 91
LE C +M +L+Q+H Q ++ L +P D+ + R +F +I P ++
Sbjct: 46 LETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLF 105
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVE--KQLHSQA 148
N+++RGY+ + Y EM+ +G+ PDR+ FP LFK DI +E +QLH
Sbjct: 106 IWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHV 165
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+K GL + F+H L+ MY C LD +E+
Sbjct: 166 LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESR 225
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++F ME + V P VTLV VL+A ++ +DLRT K+VH V S++ L+ ++D Y
Sbjct: 226 RLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMY 285
Query: 241 CKCKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 286 ADCGEMDSALGIFRSM 301
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M+ NVKP+ T+V+VLTA A L + + +D + + + ++ L+
Sbjct: 355 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALI 414
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC V +A +F +M
Sbjct: 415 DMYFKCGDVDKAESIFREM 433
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 47/165 (28%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F ++ + +++ GY N EA + M + PD F S+ +CA
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACA-- 383
Query: 139 YVEKQLHSQAIKFG-----------LASDSFLHNTLINMYSSCWCLDQP----------- 176
H A++ G + +D F+ N LI+MY C +D+
Sbjct: 384 ------HLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 437
Query: 177 -----------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
++A+ +F M ++ P+ +T + VL+A
Sbjct: 438 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 482
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 46/256 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC--------------ADY-HVRLVFSQISNPTIY 91
LE C +M +L+Q+H Q ++ L +P D+ + R +F +I P ++
Sbjct: 25 LETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLF 84
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVE--KQLHSQA 148
N+++RGY+ + Y EM+ +G+ PDR+ FP LFK DI +E +QLH
Sbjct: 85 IWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHV 144
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+K GL + F+H L+ MY C LD +E+
Sbjct: 145 LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESR 204
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++F ME + V P VTLV VL+A ++ +DLRT K+VH V S++ L+ ++D Y
Sbjct: 205 RLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMY 264
Query: 241 CKCKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 265 ADCGEMDSALGIFRSM 280
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M+ NVKP+ T+V+VLTA A L + + +D + + + ++ L+
Sbjct: 334 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALI 393
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC V +A +F +M
Sbjct: 394 DMYFKCGDVDKAESIFREM 412
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 47/165 (28%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F ++ + +++ GY N EA + M + PD F S+ +CA
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACA-- 362
Query: 139 YVEKQLHSQAIKFG-----------LASDSFLHNTLINMYSSCWCLDQP----------- 176
H A++ G + +D F+ N LI+MY C +D+
Sbjct: 363 ------HLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 416
Query: 177 -----------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
++A+ +F M ++ P+ +T + VL+A
Sbjct: 417 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 461
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 116/256 (45%), Gaps = 48/256 (18%)
Query: 54 RELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTCNSIVRGY 100
R L QIHAQ++ + L F + + + R VF + P+++ N+I+RGY
Sbjct: 85 RHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGY 144
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDS 157
++ N +A Y M G+ PD F P + K+C+ + V K++H Q + G SD
Sbjct: 145 SSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDV 204
Query: 158 FLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIE 189
F+ N L+ +Y+ C ++Q P EA++IF +M
Sbjct: 205 FVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQR 264
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NVKP+ + LV+VL A DL K +H CV + G +L +L Y KC V A
Sbjct: 265 NVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVA 324
Query: 250 WDLFVKMLFP----WN 261
F +M P WN
Sbjct: 325 RSFFDQMEIPNVMMWN 340
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 57/299 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L+ CS + L K++H Q+ R + C R+VF + + I
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI 235
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CADIYVEKQLHSQ 147
+ S++ GY L EA + +M + + PD S+ ++ D+ K +H
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL-------DQ---------------------PDEA 179
+K GL + L +L MY+ C + DQ +EA
Sbjct: 296 VVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEA 355
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F M +N++ +++T+ + + A A+ L K + ++++ + + V + T L+D
Sbjct: 356 VGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDM 415
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI------SGPCP 292
+ KC V A ++F + L + SA + GL GR A + +G CP
Sbjct: 416 FAKCGSVDLAREVFDRTL----DKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCP 470
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 48/210 (22%)
Query: 43 CLVSLEKCST----MRELKQIHAQMLRTSLFFDP------------CADYHV-RLVFSQI 85
LVS+ + T + + K IH +++ L F+P C V R F Q+
Sbjct: 272 ALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM 331
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEK 142
P + N+++ GY +EA + EMI + + D S +CA + + K
Sbjct: 332 EIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAK 391
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------------- 174
+ K +D F++ LI+M++ C +D
Sbjct: 392 WMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHG 451
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ +AI +FY M+ V PN VT V +LTA
Sbjct: 452 RGQDAIDLFYAMKQAGVCPNDVTFVGLLTA 481
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 46/254 (18%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLF-----FDPCADY--HVRLVFS-------QISNPTIY 91
SL+ C T+ ELKQ+H ML+ +F C H L ++ + + ++Y
Sbjct: 28 SLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLY 87
Query: 92 TCNSIVRGYTNKNLHHEA-FLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
TCN+++RGY L EA F++ H +IV G++PD F FP L +C+ I Q+H
Sbjct: 88 TCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGV 147
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+K GL D F+ N+LI+ Y++C +D EA
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F+ M V+PN VT+V ++A A+ +DL K+V + E G S+ + L+D
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDM 267
Query: 240 YCKCKFVSRAWDLF 253
Y KC + ++F
Sbjct: 268 YMKCGDMYAVREIF 281
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 19/214 (8%)
Query: 50 CSTMRELKQIHAQMLRTSLFFD---PCAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKNL 105
C+ M EL + + L + D C D Y VR +F + S+ + N+I+ Y L
Sbjct: 246 CNLMTELG-VKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGL 304
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNT 162
E + EM+ +G PD+ S +CA D+ V K H+ + GL + N
Sbjct: 305 AGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNA 364
Query: 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+I+MY C + + A K+F M + V VT +++ R +L R+ +
Sbjct: 365 IIDMYMKC---GKREAACKVFDSMSNKTV----VTWNSLIAGLVRDGELELALRIFGEMP 417
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
ES S T++ A + A DL +M
Sbjct: 418 ESNLVSW----NTMIGAMVQASMFEEAIDLLREM 447
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 49/279 (17%)
Query: 25 NLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------ 72
N N N N++ H L+ E+C ++R+LKQ H M+RT F DP
Sbjct: 17 NFSNPNQPTTNNERSRHISLI--ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL 74
Query: 73 ---CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMF 128
+ + R VF +I P + N+++R Y + + + +M+ + P+++ F
Sbjct: 75 SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTF 134
Query: 129 PSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------- 175
P L K+ A++ + + LH A+K + SD F+ N+LI+ Y SC LD
Sbjct: 135 PFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 194
Query: 176 ------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
PD+A+++F +ME E+VK + VT+V VL+A A+ R+L ++V
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++E+ ++ L ++D Y KC + A LF M
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 41/197 (20%)
Query: 49 KCSTMRELKQIHAQMLRT-----SLFFDPCA---DYHV-RLVFSQISNPTIYTCNSIVRG 99
KC ++ + K++ M + D A DY R V + + I N+++
Sbjct: 279 KCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISA 338
Query: 100 YTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLAS 155
Y +EA + +HE+ +Q + ++ S +CA + + + +HS K G+
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398
Query: 156 DSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRME 187
+ + + LI+MYS C L++ +EA+ +FY+M+
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458
Query: 188 IENVKPNAVTLVNVLTA 204
NVKPN VT NV A
Sbjct: 459 EANVKPNGVTFTNVFCA 475
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P+EA+ +F+ ++++ N+K N +TLV+ L+A A+ L + +H
Sbjct: 333 NALISAYEQN---GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + G + + + L+ Y KC + ++ ++F
Sbjct: 390 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 126/266 (47%), Gaps = 49/266 (18%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVF 82
Q++ L LE C++M ++K+IHAQM+ T L D CA DY + +
Sbjct: 53 QSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK-IL 111
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADI--- 138
+ +N +++ N +RGY A L Y M+ +G IPD + +P LFK CA
Sbjct: 112 NNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLS 171
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQ---------------- 175
+ ++ I+ G SD F+HN +I++ SC L D+
Sbjct: 172 WTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGY 231
Query: 176 -----PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
DEA ++Y+M NV P+ VT++ V++A A+ +L +++H+ ++E G V
Sbjct: 232 VRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTV 291
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKM 256
L LMD Y KCK + A LF M
Sbjct: 292 PLANALMDMYIKCKNIEAAKILFENM 317
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 70/253 (27%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F + + + NSI+ GY L EAF Y++M ++PD + + A
Sbjct: 210 RKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQL 269
Query: 137 -----------------------------DIYVE-KQLHSQAI----------------- 149
D+Y++ K + + I
Sbjct: 270 ENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMV 329
Query: 150 ----KFGL------------ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
KFGL D L N LI + + EA+ +F+ M+ +V P
Sbjct: 330 IGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQA---KRSKEALALFHEMQASSVAP 386
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ +T+VN L+A ++ L +H VD+ +V L T L+D Y KC + +A +F
Sbjct: 387 DKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVF 446
Query: 254 VKMLFPWNNYGQW 266
+M P N W
Sbjct: 447 EEM--PGRNSLTW 457
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ T +I+ G H A ++ EMI GL+PD F + +C +
Sbjct: 445 VFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGL 504
Query: 141 EKQ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
Q + K+G++ ++ L+++ L++ +E I+
Sbjct: 505 VDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIR 549
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 53/281 (18%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRT--------SLFFDPCAD 75
+ +D +N N N ++ + KC++ REL QI A +++ + + C +
Sbjct: 22 LKIDTVNPNPPNP-------ILLISKCNSERELMQIQAYAIKSHQEDVSFNTKLINFCTE 74
Query: 76 Y-------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ R +F +S P I NSI RGY+ E F + E++ L+PD + F
Sbjct: 75 SPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTF 134
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------- 174
PSL K+CA + +QLH ++K G+ + ++ TLINMY+ C +D
Sbjct: 135 PSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVE 194
Query: 175 -----------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+P+EA+ +F M+ +N+KPN +TL++VL++ A L K +
Sbjct: 195 PCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWI 254
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
H+ + GF +V++ T L+D + KC + A +F M +
Sbjct: 255 HEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRY 295
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 32/168 (19%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R VF +I P + N+++ GY +N +EA + EM + L P+
Sbjct: 175 MYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEIT 234
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
S+ SCA + + K +H A K G ++ LI+M++ C LD
Sbjct: 235 LLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMR 294
Query: 175 ------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q + ++ +F RM ENV+P+ +T + +L A
Sbjct: 295 YKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNA 342
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD--------------PCADY--HVRLVFSQISNPTI 90
L KC+++ ELKQI A ++T+L D P Y H +F QI + I
Sbjct: 36 LSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDI 95
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
N + RGY N + AF + E++ GL+PD + F SL K+CA ++ LH
Sbjct: 96 ILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCF 155
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
A+K GL + ++ TLINMY+ C ++ QP+EA
Sbjct: 156 AVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEA 215
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F ++ N++P VT+++V+ + A L K +H+ V + GF +V++ T L+D
Sbjct: 216 LSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDM 275
Query: 240 YCKCKFVSRAWDLFVKM 256
+ KC ++ A +F M
Sbjct: 276 FAKCGSLTDAISIFEGM 292
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 46/258 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------FFDPCADY-------HVRLVFSQISNPTIY 91
+ KC+++REL QI A +++ + + C + + R +F +S P I
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIV 95
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
NS+ RGY+ E F + E++ G++PD + FPSL K+CA + +QLH +
Sbjct: 96 IFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLS 155
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAI 180
+K GL + ++ TLINMY+ C +D +P+EA+
Sbjct: 156 MKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEAL 215
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M+ + +KPN +TL++VL++ A L K +HK + F +V++ T L+D +
Sbjct: 216 SLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMF 275
Query: 241 CKCKFVSRAWDLFVKMLF 258
KC + A +F KM +
Sbjct: 276 AKCGSLDDAVSIFEKMRY 293
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
+ E +Q+H ++ L + C D R VF +I P + N+++
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMIT 203
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLAS 155
GY +N +EA + EM + L P+ S+ SCA + + K +H A K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263
Query: 156 DSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRME 187
++ LI+M++ C LD + ++++ +F RM
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323
Query: 188 IENVKPNAVTLVNVLTA 204
ENV+P+ +T + +L A
Sbjct: 324 SENVQPDEITFLGLLNA 340
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 46/258 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------FFDPCADY-------HVRLVFSQISNPTIY 91
+ KC+++REL QI A +++ + + C + + R +F +S P I
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIV 95
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
NS+ RGY+ E F + E++ G++PD + FPSL K+CA + +QLH +
Sbjct: 96 IFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLS 155
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAI 180
+K GL + ++ TLINMY+ C +D +P+EA+
Sbjct: 156 MKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEAL 215
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M+ + +KPN +TL++VL++ A L K +HK + F +V++ T L+D +
Sbjct: 216 SLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMF 275
Query: 241 CKCKFVSRAWDLFVKMLF 258
KC + A +F KM +
Sbjct: 276 AKCGSLDDAVSIFEKMRY 293
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
+ E +Q+H ++ L + C D R VF +I P + N+++
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLAS 155
GY +N +EA + EM + L P+ S+ SCA + + K +H A K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263
Query: 156 DSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRME 187
++ LI+M++ C LD + ++++ +F RM
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323
Query: 188 IENVKPNAVTLVNVLTA 204
ENV+P+ +T + +L A
Sbjct: 324 SENVQPDEITFLGLLNA 340
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 125/266 (46%), Gaps = 49/266 (18%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVF 82
Q++ L LE C++M ++K+IHAQM+ T L D CA DY + +
Sbjct: 53 QSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDK-IL 111
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADI--- 138
+ +N ++ N +RGY A L Y M+ +G IPD + +P LFK CA
Sbjct: 112 NNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLS 171
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQ---------------- 175
+ ++ I+ G SD F+HN +I++ SC L D+
Sbjct: 172 WTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGY 231
Query: 176 -----PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
DEA ++Y+M NV P+ VT++ V++A A+ +L +++H+ ++E G V
Sbjct: 232 VRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTV 291
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKM 256
L LMD Y KCK + A LF M
Sbjct: 292 PLANALMDMYIKCKNIEAAKILFENM 317
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 70/253 (27%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F + + + NSI+ GY L EAF Y++M ++PD + + A
Sbjct: 210 RKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQL 269
Query: 137 -----------------------------DIYVE-KQLHSQAI----------------- 149
D+Y++ K + + I
Sbjct: 270 ENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMV 329
Query: 150 ----KFGL------------ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
KFGL D L N LI + + EA+ +F+ M+ +V P
Sbjct: 330 IGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQA---KRSKEALALFHEMQASSVAP 386
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ +T+VN L+A ++ L +H VD+ +V L T L+D Y KC + +A +F
Sbjct: 387 DKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVF 446
Query: 254 VKMLFPWNNYGQW 266
+M P N W
Sbjct: 447 EEM--PGRNSLTW 457
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ T +I+ G H A ++ EMI GL+PD F + +C +
Sbjct: 445 VFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGL 504
Query: 141 EKQ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
Q + K+G++ ++ L+++ L++ +E I+
Sbjct: 505 VDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIR 549
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 83/298 (27%)
Query: 47 LEK-CSTMRELKQIHAQMLRTSLFFDP---------CADY------HVRLVFSQISNPTI 90
LEK C+TM++L++IHA +L+T L P CA + LVF+QI +P +
Sbjct: 30 LEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNL 89
Query: 91 YTCNSIVRGYTNKNL-HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHS 146
++ N+I+RG++ + HH LF +IV + P R +PS+FK+ A + + QLH
Sbjct: 90 FSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHG 149
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDE 178
+ IK GL D F+ NT+I MY++C L + DE
Sbjct: 150 RVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDE 209
Query: 179 AIKIFYRMEIEN-------------------------------VKPNAVTLVNVLTARAR 207
+ K+F M + N +KP+ T+V++L A AR
Sbjct: 210 SRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASAR 269
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
L+ + +H + ++ F +V + +++D YCKC + A+ +F +K L WN
Sbjct: 270 LGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWN 327
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 144/344 (41%), Gaps = 85/344 (24%)
Query: 20 NSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------- 72
N+ +N N++N ++ + L L+K S +K + A+++R +L D
Sbjct: 12 NARFLNSHTHNHSNNKPKFGSQEALNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLL 71
Query: 73 --CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
C Y + L+F QI NP +T N ++R Y +A L Y+ MI +G PD+F
Sbjct: 72 RLCFSYQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKF 131
Query: 127 MFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHN---------------------- 161
FP + K+C D + K++H AIK G D+FL N
Sbjct: 132 TFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKM 191
Query: 162 ---------TLINMYSSCWCLD----------------------------QPDEAIKIFY 184
T + +C LD +P EA ++F
Sbjct: 192 AVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQ 251
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
RM++ NV+PN TLV +L A L +R+H+ E+GF V L T L+D Y KC
Sbjct: 252 RMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCG 311
Query: 245 FVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ A +F +M L WN +M ++G G G+ + A
Sbjct: 312 SIEDAKKVFEEMQKKSLATWN-----SMITSLGVHGF-GKEALA 349
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R F ++ + + +++ GY EAF + M + + P+ F L ++C +
Sbjct: 215 ARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRACTE 274
Query: 138 I---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------- 177
+ + +++H A++ G FL LI+MYS C ++
Sbjct: 275 LGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSM 334
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-G 225
EA+ +F +ME NV+P+A+T V VL A ++ R K + E G
Sbjct: 335 ITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYG 394
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E T +++ Y + ++ +L M
Sbjct: 395 ITPMLEHYTCMIELYTRAAMLNEVSELVNSM 425
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 128/240 (53%), Gaps = 27/240 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPTI 90
L L KC+ + ++KQ+HAQ++R +L D C ++ + VF+Q+ P +
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ CNS++R + + ++AF + EM GL D F +P L K+C+ + V K +H+
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
K GL+SD ++ N LI+ YS C L D A+K+F +M + + V+ ++L +
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRD-AMKLFEKMS----ERDTVSWNSMLGGLVK 197
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
A +LR +R+ + + S T++D Y +C+ +S+A++LF KM P N W+
Sbjct: 198 AGELRDARRLFDEMPQRDLISW----NTMLDGYARCREMSKAFELFEKM--PERNTVSWS 251
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + N+++ GY +AF + +M + + M + D+
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMG-YSKAGDM 263
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLI-NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ + + K L + + + T+I Y+ L + D ++ +M +K +A
Sbjct: 264 EMARVMFD---KMPLPAKNVVTWTIIIAGYAEKGLLKEAD---RLVDQMVASGLKFDAAA 317
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF---- 253
++++L A + L R+H + S S+ + L+D Y KC + +A+D+F
Sbjct: 318 VISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIP 377
Query: 254 VKMLFPWN 261
K L WN
Sbjct: 378 KKDLVSWN 385
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 128/240 (53%), Gaps = 27/240 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPTI 90
L L KC+ + ++KQ+HAQ++R +L D C ++ L VF+Q+ P +
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+ CNS++R + + ++AF + EM GL D F +P L K+C+ + V K +H+
Sbjct: 83 HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNH 142
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
K GL+SD ++ N LI+ YS C L D A+K+F +M + + V+ ++L +
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRD-AMKLFEKMS----ERDTVSWNSMLGGLVK 197
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
A +LR +++ + + S T++D Y +C+ +SRA++LF KM P N W+
Sbjct: 198 AGELRDARKLFDEMPQRDLISW----NTMLDGYARCREMSRAFELFEKM--PERNTVSWS 251
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 78 VRLVFSQISNPT--IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
R++F ++ P + T I+ GY K L EA +M+ GL D S+ +C
Sbjct: 266 ARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAAC 325
Query: 136 AD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP-------- 176
A+ + + + HS K L S++ + N L++MY+ C L D P
Sbjct: 326 AESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWN 385
Query: 177 ------------DEAIKIFYRMEIENVKPNAVTLVNVL 202
EAI++F RM E + P+ VT + VL
Sbjct: 386 TMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVL 423
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 133/297 (44%), Gaps = 58/297 (19%)
Query: 8 HHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSL-EKCSTMRELKQIHAQMLRT 66
H Q RT +L IN N + H L+SL EKC + LKQI AQM+
Sbjct: 26 HSQRRTRSLPHHRDKPINW------NSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIIN 79
Query: 67 SLFFDP---------CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
L DP CA DY V+ + I NP I++ N +RG++ E+F
Sbjct: 80 GLILDPFASSRLIAFCALSESRYLDYSVK-ILKGIENPNIFSWNVTIRGFSESENPKESF 138
Query: 111 LFYHEMIVQGLI---PDRFMFPSLFKSCADIYVEKQLH---SQAIKFGLASDSFLHNTLI 164
L Y +M+ G PD F +P LFK CAD+ + H +K L S +HN I
Sbjct: 139 LLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASI 198
Query: 165 NMYSSC--------------------W-CL-------DQPDEAIKIFYRMEIENVKPNAV 196
+M++SC W CL + ++AI ++ ME E VKP+ V
Sbjct: 199 HMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDV 258
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
T++ ++++ + DL K ++ V E+G + L LMD + KC + A +F
Sbjct: 259 TMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 101/279 (36%), Gaps = 67/279 (24%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F C D + R VF + + + N ++ GY +A Y M +G+ PD
Sbjct: 200 MFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVT 259
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINM------------------ 166
L SC D+ K+ + + GL L N L++M
Sbjct: 260 MIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE 319
Query: 167 -------------YSSCWCLD----------------------------QPDEAIKIFYR 185
Y+ C LD + +A+ +F
Sbjct: 320 KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQE 379
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M+ N KP+ +T+++ L+A ++ L +H+ +++ +V L T+L+D Y KC
Sbjct: 380 MQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGN 439
Query: 246 VSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+S A +F + +A +G L G STA
Sbjct: 440 ISEALSVFHGI----QTRNSLTYTAIIGGLALHGDASTA 474
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 20/269 (7%)
Query: 49 KCSTMRELKQIHAQMLRTSLF--------FDPCADYHV-RLVFSQISNPTIYTCNSIVRG 99
KC + E ++I + + ++ + C V R +F + + N+++ G
Sbjct: 304 KCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGG 363
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASD 156
+A + EM PD +C+ + V +H K+ L+ +
Sbjct: 364 SVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLN 423
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
L +L++MY+ C + EA+ +F+ ++ N++T ++ A D T
Sbjct: 424 VALGTSLVDMYAKCGNI---SEALSVFHGIQTR----NSLTYTAIIGGLALHGDASTAIS 476
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQ 275
+ ++G L+ A C + D F +M +N Q S V
Sbjct: 477 YFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLL 536
Query: 276 GLVGRHSTAHQISGPCPKKAHKLFFFSML 304
G G A ++ P +A + ++L
Sbjct: 537 GRAGLLEEADRLMESMPMEADAAVWGALL 565
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 50/270 (18%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA--------DYH 77
N+ Y + L L KC++++ELKQI A ++T L + C DY
Sbjct: 22 NTTYPSSL-LSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYA 80
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
+L F I P I NS+ RGY+ N +A + + + L+PD + FPSL K+C
Sbjct: 81 HQL-FEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139
Query: 136 ADIYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
A + + KQLH AIK GL + ++ TLINMY+ C +D
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+P+EA+ +F +++ +KPN VT+++VL++ A L K +H+ V ++G
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL 259
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+V++ T L+D Y KC + A +F M
Sbjct: 260 DKYVKVNTALIDMYAKCGSLDGAISVFESM 289
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 137/320 (42%), Gaps = 84/320 (26%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVF 82
+++ + LV L+KCS ++LKQ+H +++R L +D Y + LVF
Sbjct: 20 TRFGSEEALVLLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVF 79
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
Q++ P ++T N ++R YT AFL + M+ QG PD+F +P + +C +
Sbjct: 80 DQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALD 139
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINM-------------------------------YS 168
V + H+ AIK G D ++ NT++N+ +
Sbjct: 140 VGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGFV 199
Query: 169 SCWCLD----------------------------QPDEAIKIFYRMEIENVKPNAVTLVN 200
+C LD QP EA +F RM+ +NV+PN TLV+
Sbjct: 200 ACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVS 259
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKM 256
++ A L+ +RVH ++GF L T L+D Y KC + A +F ++
Sbjct: 260 LVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRT 319
Query: 257 LFPWNNYGQWAMSATVGPQG 276
L WN M ++G G
Sbjct: 320 LATWN-----TMITSLGVHG 334
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 51/258 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI---------------- 90
L C T++ELKQ+H M++ L A +L+ S + T+
Sbjct: 32 LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGN 91
Query: 91 ----YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---Q 143
+ N ++RGY + L +A L Y +M+V G++PD++ FP L +C+ I Q
Sbjct: 92 MASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQ 151
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQ 175
+H +K GL D F+ N+LI+ Y+ C W D
Sbjct: 152 VHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDL 211
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ +F++M V+PN VT+V V++A A+ +DL K+V + E G +
Sbjct: 212 SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNA 271
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D Y KC + A +F
Sbjct: 272 LVDMYMKCGDICAARQIF 289
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 48/274 (17%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFS 83
+Y F L + K + E Q+H +L+ L F+ C + R +F
Sbjct: 130 KYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFD 189
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYV 140
+ + + S++ GY+ ++L EA + +M G+ P+ + +CA D+ +
Sbjct: 190 GMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLEL 249
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQ-------------- 175
K++ S + G+ + + N L++MY C C ++
Sbjct: 250 GKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVH 309
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ + I M + +P+ VT+++ + A A+ DL K H V +G +
Sbjct: 310 HEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNI 369
Query: 233 KTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
++D Y KC A +F K + WN+
Sbjct: 370 SNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNS 403
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 50 CSTMRELKQIHAQMLRTSL--FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
CS + EL + ++ +L + C D R +F + +N + N+I+ Y +
Sbjct: 254 CSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWA 313
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTL 163
+ + EM+ +G PD+ S +CA D+ V K H+ ++ GL + N +
Sbjct: 314 SDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAI 373
Query: 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
I+MY C + + A K+F M + V VT +++ R D+ R+ + E
Sbjct: 374 IDMYMKC---GKREAACKVFEHMPNKTV----VTWNSLIAGLVRDGDMELAWRIFDEMLE 426
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S T++ A + A +LF +M
Sbjct: 427 RDLVSW----NTMIGALVQVSMFEEAIELFREM 455
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 102/260 (39%), Gaps = 59/260 (22%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISN 87
L ++ C+ + +L K HA +LR L + D +++ VF + N
Sbjct: 336 LSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPN 395
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQ 147
T+ T NS++ G A+ + EM+ + L+ M +L +
Sbjct: 396 KTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQ-------------- 441
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
++M+ +EAI++F M+ + + + VT+V + +A
Sbjct: 442 ----------------VSMF---------EEAIELFREMQNQGIPGDRVTMVGIASACGY 476
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
L K V ++++ ++L T L+D + +C S A +F +M + W
Sbjct: 477 LGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRM--EKRDVSAW- 533
Query: 268 MSATVGPQGLVGRHSTAHQI 287
+A +G + G A ++
Sbjct: 534 -TAAIGVMAMEGNTEGAIEL 552
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 36/283 (12%)
Query: 5 LPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQML 64
L L +T++ S S N Y+ +KCST+++LKQIHA ++
Sbjct: 17 LSLQLKTKSSFWQSKWSQFALCSTNTNPKDTCLYKEQLLKSHFKKCSTVKDLKQIHACIV 76
Query: 65 RTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
++ +VF I P + N+++RG+ N AF +Y M +GL+ D
Sbjct: 77 QSGF-----EQNLFVIVFENIECPDEFLWNTMIRGFGKSNEPQRAFEYYKRMQEEGLMAD 131
Query: 125 RFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS------------- 168
F F L K C + + KQ+H +K+G S F+ NTLI+MY
Sbjct: 132 NFTFSFLIKVCGQLGSVLLGKQMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFE 191
Query: 169 --------------SCWC-LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
C+ + EA+ +F RM +++P+ TLV +L A + +L
Sbjct: 192 EIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSALGELDI 251
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +H C+ +G VE+ +++D Y KC + A++ F KM
Sbjct: 252 GRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKM 294
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 33/163 (20%)
Query: 75 DYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
D+ + R +F +I +P + N+++ Y + EA + M+ + PD +
Sbjct: 182 DFEISRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILA 241
Query: 134 SCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------- 176
+C+ ++ + + +HS GL ++N++I+MY+ C L++
Sbjct: 242 ACSALGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKMSQRNTVT 301
Query: 177 --------------DEAIKIFYRM-EIENVKPNAVTLVNVLTA 204
+EA+ +F +M E + ++P++VT + VL A
Sbjct: 302 WNTMILGLATHGHTNEALVLFSKMLEQKLMEPDSVTFLGVLCA 344
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 139/314 (44%), Gaps = 64/314 (20%)
Query: 51 STMRELKQIHAQMLRTSLFFDPC--------------ADYHVRLVFSQISNPTIYTCNSI 96
S ++ LK IHA +LR L D +Y R + Q P I+ N++
Sbjct: 21 SCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFR-ILDQTKEPNIFLFNTM 79
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGL 153
+RG + E+ YH M +GL PD F FP + K+CA D + ++HS +K G
Sbjct: 80 IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGC 139
Query: 154 ASDSFLHNTLINMYSSCWCLDQ--------PD--------------------EAIKIFYR 185
+D+F+ +LIN+Y+ C +D PD EAI +F R
Sbjct: 140 EADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
+ ++P++ +LV VL+A R DLR+ + + + + E+G +V + T L+D Y KC
Sbjct: 200 LLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGN 259
Query: 246 VSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSML 304
+ RA +F ML N W +M GL PK+A L FF ML
Sbjct: 260 MERARSVFDGML--EKNIVSWSSMIQGYASNGL--------------PKEALDL-FFKML 302
Query: 305 KKVHVPGVLIQVHV 318
+ P V V
Sbjct: 303 NEGLKPDCYAMVGV 316
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I + + + + GY EA + ++ GL PD F + +C D
Sbjct: 165 VFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGD 224
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + + G+ + F+ L++ Y C +++
Sbjct: 225 LRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQG 284
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P EA+ +F++M E +KP+ +V VL + AR L ++ + F +
Sbjct: 285 YASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDN 344
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
L T L+D Y KC + RAW++F M
Sbjct: 345 SVLGTALIDMYAKCGRMDRAWEVFRGM 371
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 48/188 (25%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F+ C + R VF + I + +S+++GY + L EA + +M+ +GL PD +
Sbjct: 253 FYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYA 312
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFG------LASDSFLHNT-----LINMYSSCWCLDQP 176
+ SCA + A++ G + + FL N+ LI+MY+ C +D+
Sbjct: 313 MVGVLCSCARL--------GALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRA 364
Query: 177 ----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+A+ +F +ME +KP+ T V +L A A
Sbjct: 365 WEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHA 424
Query: 209 RDLRTVKR 216
+ +R
Sbjct: 425 GLVEEGRR 432
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 49/258 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTI 90
LE C + +LKQI AQM+ T L D CA DY ++ + + + NP +
Sbjct: 60 LENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIK-ILNNLQNPNV 118
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCADI---YVEKQLHS 146
++ N+++RG + + Y M+ + G PD + + LFK CA++ Y+ ++
Sbjct: 119 FSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILG 178
Query: 147 QAIKFGLASDSFLHNTLINMYSSC------------WCL----------------DQPDE 178
Q +K G D +L+N +I+M S C+ QP E
Sbjct: 179 QVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPRE 238
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ I+ +M E+VKP+ VT++ V++A A+ L+ + +H+ ++ESG + L LMD
Sbjct: 239 AMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMD 298
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC + LF M
Sbjct: 299 MYVKCGDLEAGKVLFDNM 316
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
M SC + EA+++F M+ N+KP+ VT+++ L+A ++ L T H + +
Sbjct: 358 MIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHN 417
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
V L T L+D Y KC +++A +F +M P N W +A +G L G + A
Sbjct: 418 LSLDVALGTALIDMYAKCGNMTKALQVFNEM--PRRNSLTW--TAIIGGLALYGNVNDA 472
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 42/315 (13%)
Query: 1 MAAPLP-LHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQI 59
MA P P L R+ +L + N I L+N + + H L +++CS ++LKQI
Sbjct: 1 MAIPNPCLVSLPRSHSLPTPNPNSITLNN------DRYFANHPTLSLIDQCSETKQLKQI 54
Query: 60 HAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
HAQMLRT LFFDP + DY + VF QI +P +YT N+++R Y +
Sbjct: 55 HAQMLRTGLFFDPFSASRLITAAALSPFPSLDY-AQQVFDQIPHPNLYTWNTLIRAYASS 113
Query: 104 NLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
+ H++ L + M+ Q PD+F FP L K+ + +++ K H IK L SD F+
Sbjct: 114 SNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFI 173
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N+LI+ Y+ C + + YR+ + + + V+ +++TA + + +
Sbjct: 174 LNSLIHFYAKCG-------ELGLGYRVFVNIPRRDVVSWNSMITAFVQG---GCPEEALE 223
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
E + + L ++D Y KC V A LF KM P + W + VG +G
Sbjct: 224 LFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKM--PEKDIVSWT-TMLVG-YAKIG 279
Query: 280 RHSTAHQISGPCPKK 294
+ A I P +
Sbjct: 280 EYDAAQGIFDAMPNQ 294
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 60/226 (26%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F+ C + + VF I + + NS++ + EA + EM Q +
Sbjct: 180 FYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNA 239
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLAS---------------------------DSFLH 160
++ C + K+L + + + S D
Sbjct: 240 MLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAW 299
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y C +P EA+++F+ +++ + KP+ VTL
Sbjct: 300 NALISAYEQC---GKPKEALELFHELQLSKTAKPDEVTL--------------------- 335
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ G + L T+L+D YCKC + +A +F K +F W+
Sbjct: 336 ---KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWS 378
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 52/260 (20%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP----------------- 88
SL C T+ +LKQ+H Q+ + L P + ++I++P
Sbjct: 31 SLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDV 90
Query: 89 ----TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEK 142
++ NS++RGY++ L EA L Y M+V G+ P+ + FP + C I + E
Sbjct: 91 RSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEG 150
Query: 143 -QLHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------------- 173
Q+H +K GL D F+ N LI+ Y+ C +
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
D+P EA+ +F+ M ++P++VT+V V++A A+ RDL +RV + E G + +
Sbjct: 211 DRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMV 270
Query: 234 TTLMDAYCKCKFVSRAWDLF 253
L+D Y KC + A LF
Sbjct: 271 NALVDMYMKCGAIDAAKRLF 290
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 106/273 (38%), Gaps = 48/273 (17%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQ 84
Y F L K + E Q+H +++ L F+ C H VF
Sbjct: 132 YTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEG 191
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
+S + + S++ GY + EA + EM+ G+ P + +CA D+ +
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG 251
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------ 177
+++ + + GL + + N L++MY C +D
Sbjct: 252 ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 311
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EA+ I M + +P+ VT+++ ++A A+ DL K H V +G +
Sbjct: 312 GLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIG 371
Query: 234 TTLMDAYCKC---KFVSRAWDLFV-KMLFPWNN 262
++D Y KC + R +DL K + WN+
Sbjct: 372 NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNS 404
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++AI++F M+ E +K + VT++ + +A K VH ++++G + L T L
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTAL 506
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+D + +C A +F KM + W +A +G + G A
Sbjct: 507 VDMFARCGDPQSAMQVFNKM--TERDVSAW--TAAIGTMAMEGNGEGA 550
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 50/230 (21%)
Query: 68 LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+F+DPC H R VF+ N+I+ G+ + L + F FY +M ++G++PD++
Sbjct: 68 VFYDPC---HERNVFAY---------NAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYT 115
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLASDSF----------------------------- 158
FP + ++C ++ K++H +K GL D F
Sbjct: 116 FPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRD 175
Query: 159 --LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
L N +IN Y+ CLD EA+++F RM ++ V P+ T+ +L+ A DL K
Sbjct: 176 VVLWNAMINGYAKIGCLD---EALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKT 232
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
VH V + G+ S V + L+D Y KCK + A +F K +F WN+
Sbjct: 233 VHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNS 282
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 42/218 (19%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
++F I+ I++ NSI+ + H + +M+ G++PD ++ +C A
Sbjct: 267 IIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLA 326
Query: 137 DIYVEKQLHSQAIKFGLASDS--------FLHNTLINMYSSCWCLD----------QPD- 177
+ +++H I GL D + N +++MY+ C ++ + D
Sbjct: 327 ALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDV 386
Query: 178 -----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
EA+ +F +M KPN VTLV VL+A A + R+
Sbjct: 387 ASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHA-GFVSHGRLFLA 445
Query: 221 VDES--GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
ES G +E T ++D + + A+++ KM
Sbjct: 446 QMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKM 483
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 122/260 (46%), Gaps = 51/260 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTI 90
++C++ ++LKQIHAQMLRT+ DP A DY R VF QI P +
Sbjct: 146 FQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDY-ARKVFDQIPQPNL 204
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCAD---IYVEKQLHS 146
Y+ N ++R + ++ L + M+ P++F FP L K+ A+ V K +H
Sbjct: 205 YSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHG 264
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD------------------------------QP 176
AIK D F+ N+LI+ Y+SC LD P
Sbjct: 265 MAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYP 324
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
D+A+ +F RM E V PNAVT+V+V++A A+ +L ++V +D + ++ +
Sbjct: 325 DKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNAT 384
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
+D + KC V A LF M
Sbjct: 385 IDMFVKCGEVEIARGLFDNM 404
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 89/313 (28%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHVR-LVFSQI--SNPTIYTCNSIVRGYT 101
K +H ++TS F+ C + LVF I +N I + NS+V G+
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFV 319
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPS------------------------------- 130
+A + M +G+ P+ S
Sbjct: 320 QGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLN 379
Query: 131 -------LFKSCADIYVEKQL------------------HSQAIKFGLASDSF------- 158
+F C ++ + + L +++ + G+A D F
Sbjct: 380 VCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKD 439
Query: 159 --LHNTLINMYSSCWCLDQPDEAIKIFYRMEI--ENVKPNAVTLVNVLTARARARDLRTV 214
N LI+ Y +P EA+ IF +++ +P+ VTL++ L+A A+ +
Sbjct: 440 IPAWNVLISGYEQS---GRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGP 274
+ +H + + + L T+L+D Y K V +A ++F + N + SA +
Sbjct: 497 EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSI----GNKDVFVWSAMIAG 552
Query: 275 QGLVGRHSTAHQI 287
+ GR A ++
Sbjct: 553 LAMHGRGEAAIEL 565
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 58/276 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRT--------------------SLFFDPCADYHVRLVFS 83
L +L+ C +++ LKQIHA +++T SL DP Y + L +
Sbjct: 26 LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDP--RYALSL-LA 82
Query: 84 QISNPTIYTCNSIVRGY-TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
Q+ P + N+I+RG T+ N E + Y +M+ +G++PD + P + K+CA+ +
Sbjct: 83 QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 142
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------ 177
+++H QAIK GLASD ++ NTL+ MY+ C + Q D
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202
Query: 178 ------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CVDESGFWSHV 230
E + +F+ M EN++ + +TLV VL++ AR DLR +++H+ + S V
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ L+D Y KC + A +F +M P N W
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEM--PVKNVVSW 296
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 133/349 (38%), Gaps = 64/349 (18%)
Query: 5 LPLHHQTRTPALSSDNSPLINLDNINNNNINS---------------QYQAHFCLVSLEK 49
L L Q RTP L N+ + L NN++I Y F L + +
Sbjct: 78 LSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAE 137
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCAD------YHV-------RLVFSQISNPTIYTCNSI 96
+RE +++H Q ++ L D Y V R VF + + ++
Sbjct: 138 SRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTM 197
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK-FG 152
++GY E + EM + L D + SCA D+ + ++LH I+
Sbjct: 198 IQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSN 257
Query: 153 LASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFY 184
+ D F+ N L++MY C + Q E++ +F
Sbjct: 258 VNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFR 317
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+M+ VKP+ VTLV VL + A L K VH +D + + + L+D Y KC
Sbjct: 318 KMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCG 377
Query: 245 FVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK 293
+ +A +F M N ++ +A + + G+ A + PK
Sbjct: 378 SIDQACWVFQAM----NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPK 422
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 48/218 (22%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELK---QIHAQMLRTS-------------LFFDPCADYH- 77
N Q ++ L C+ + +L+ ++H ++R S + C D +
Sbjct: 221 NLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANF 280
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ + + NS++ G K E+ + +M G+ PD ++ SCA+
Sbjct: 281 ARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCAN 340
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ V K +H+ + + +D F+ N L++MY+ C +DQ
Sbjct: 341 LGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAM 400
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F M ++P+ VT V VLTA
Sbjct: 401 IVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 438
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 38/223 (17%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
DY +R VF +I NP + N+++RG +AF FY M V+G + D F + L K
Sbjct: 2 DYALR-VFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 135 CADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------------- 168
C + + KQ+H +K GL F+ NTL++MY
Sbjct: 61 CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAW 120
Query: 169 ------SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+ +C + EAI++F+RM +KP+ T V L+A A +L +RVH C+D
Sbjct: 121 NTIIDCNVYC-GRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCID 179
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+G + V + +L+D Y KC V A+++F KM + WN
Sbjct: 180 HTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWN 222
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 126/267 (47%), Gaps = 48/267 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRT--------SLFFDPCADY-------HVRLVFSQISNPTIY 91
+ KC+++RELKQI A ++T + + C H +F +I P I
Sbjct: 42 IPKCTSLRELKQIQAYTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIV 101
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQA 148
N++ RGY + A L +++ GL+PD + F SL K+CA + KQLH A
Sbjct: 102 LFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLA 161
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAI 180
+K G+ + ++ TLINMY++C +D +P+EA+
Sbjct: 162 VKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEAL 221
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F ++ +KP VT++ L++ A L + +H+ V ++GF +V++ T L+D Y
Sbjct: 222 ALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMY 281
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQWA 267
KC + A +F M P + W+
Sbjct: 282 AKCGSLDDAVSVFKDM--PRRDTQAWS 306
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 129/288 (44%), Gaps = 51/288 (17%)
Query: 17 SSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---- 72
SS SP+ IN N +S + + L LE+C ++ +LKQI AQM+ T L +
Sbjct: 36 SSSLSPITK--TINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAAS 93
Query: 73 -----CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG 120
CA DY R+++ +I +++ N+ +RGY F+ Y M++ G
Sbjct: 94 RLVAFCALSESKELDYCTRILY-RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGG 152
Query: 121 -LIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC------ 170
L PD +P L K C Y + + +KFG D F+HN I M SC
Sbjct: 153 TLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVA 212
Query: 171 --------------W------CLDQ--PDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
W C+ + EAIKI+ ME E V+PN +T++ ++++ ++
Sbjct: 213 YDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQV 272
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+DL K H + E G + L LMD Y KC + A LF M
Sbjct: 273 QDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNM 320
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ S C Q EA+ +F+ M+I ++P+ VT+VN L+A ++ L +H ++
Sbjct: 362 IISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHK 421
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V L T L+D Y KC ++RA +F ++ P N W
Sbjct: 422 LSIDVALGTALVDMYAKCGNIARALQVFEEI--PQRNCLTW 460
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R + +I ++ N+I+ G EA +HEM ++ + PD+ + +C+ +
Sbjct: 345 REILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQL 404
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
V +H + L+ D L L++MY+ C
Sbjct: 405 GALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 129/288 (44%), Gaps = 51/288 (17%)
Query: 17 SSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---- 72
SS SP+ IN N +S + + L LE+C ++ +LKQI AQM+ T L +
Sbjct: 36 SSSLSPITK--TINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAAS 93
Query: 73 -----CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG 120
CA DY R+++ +I +++ N+ +RGY F+ Y M++ G
Sbjct: 94 RLVAFCALSESKELDYCTRILY-RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGG 152
Query: 121 -LIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC------ 170
L PD +P L K C Y + + +KFG D F+HN I M SC
Sbjct: 153 TLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVA 212
Query: 171 --------------W------CLDQ--PDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
W C+ + EAIKI+ ME E V+PN +T++ ++++ ++
Sbjct: 213 YDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQV 272
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+DL K H + E G + L LMD Y KC + A LF M
Sbjct: 273 QDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNM 320
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ S C Q EA+ +F+ M+I ++P+ VT+VN L+A ++ L +H ++
Sbjct: 362 IISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHK 421
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V L T L+D Y KC ++RA +F ++ P N W
Sbjct: 422 LSIDVALGTALVDMYAKCGNIARALQVFEEI--PQRNCLTW 460
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R + +I ++ N+I+ G EA +HEM ++ + PD+ + +C+ +
Sbjct: 345 REILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQL 404
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
V +H + L+ D L L++MY+ C
Sbjct: 405 GALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 63/285 (22%)
Query: 44 LVSLEKCSTMRELKQ---IHAQMLRTSLF-FD------------PCADYHV-RLVFSQIS 86
+V++ CS+ ++LKQ +HA +L T L FD C D + R F ++
Sbjct: 62 VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV---QGLIPDRFMFPSLFKSC---ADIYV 140
T+ T N+++ GY+ H A Y +M+ +G+ PD F S +C DI
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
+++ ++ + G ASDS + N LINMYS C L+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+A+++F RM + KPN VT + +LTA DL + +H+ V E G+ S + +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVI 301
Query: 233 KTTLMDAYCKC-KFVSRAWDLFVKM----LFPWN-------NYGQ 265
L++ Y KC + A +F +M + WN YGQ
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQ 346
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 36/220 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF ++ N + N+++ GY + +A + M P+ F L +C
Sbjct: 217 ARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WCL 173
D+ + +H + + G SD + N L+NMY+ C W +
Sbjct: 277 LEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNI 336
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
Q +A+ IF +M++ENV PN +TL NVL+A A R K VH +
Sbjct: 337 LIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGR 396
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ V L+ +LM+ Y +C + +F K L W+
Sbjct: 397 CKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWS 436
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 44/263 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF I +P + IV + + EA +Y M+++GL PD MF C+ D
Sbjct: 14 VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKD 73
Query: 138 IYVEKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQP----DE-------------- 178
+ + LH+ ++ L D L LI MY+ C L+ DE
Sbjct: 74 LKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133
Query: 179 ----------AIKIFYRM---EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
A+KI+ M E +KP+A+T + L A D+ + + SG
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASG 193
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRH 281
+ S ++ L++ Y KC + A +F ++ + WN M + QG +
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNT-----MISGYAKQGAATQA 248
Query: 282 STAHQISGPCPKKAHKLFFFSML 304
Q GP K + + F +L
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLL 271
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 132/306 (43%), Gaps = 61/306 (19%)
Query: 33 NINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DY 76
N+ + Q + CLV +KC ++ E KQ+H Q+L+ LF D CA DY
Sbjct: 27 NLKQKEQEYLCLV--KKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDY 84
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+F Q+ PT + N+++RGY N A Y++M+ + + PD F +P + K+CA
Sbjct: 85 ACS-IFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACA 143
Query: 137 DIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV-- 191
+ V + Q+H K GL D ++ N+LINMY C ++ + IF RME ++V
Sbjct: 144 RLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEM---SCAIFRRMEQKSVAS 200
Query: 192 ------------------------------KPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ LVNVL+A + H +
Sbjct: 201 WSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSL 260
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRH 281
++ +V + T+LMD Y KC + + LF M Q + S + GL G
Sbjct: 261 LKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNM----TRKNQLSYSVIISGLGLHGYG 316
Query: 282 STAHQI 287
A QI
Sbjct: 317 RQALQI 322
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 63 MLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
+LR S FD + R +F QI P I+ N+++RG + + +A FY M +G +
Sbjct: 52 ILRCS--FDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL 109
Query: 123 PDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------ 173
P+ F FP + K+CA D+ + ++H+ +K G D F+ +L+ +Y+ C L
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV 169
Query: 174 --DQPD--------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
D PD EAI +F R+ N+ P++ T+V VL+A + DL
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDL 229
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+ + +HKC+ E G +V + T+L+D Y KC + +A +F M P + W
Sbjct: 230 NSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM--PEKDIVSWG 283
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I + + + +I+ GY EA + ++ L PD F + +C D
Sbjct: 169 VFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGD 228
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + +H ++ G+ + F+ +L++MY+ C +++
Sbjct: 229 LNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQG 288
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P EAI +F +M+ ENVKP+ T+V VL+A AR L + V VD + F +
Sbjct: 289 YALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYN 348
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
L T L+D Y KC +SRAW++F M
Sbjct: 349 PVLGTALIDLYAKCGSMSRAWEVFKGM 375
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 125/278 (44%), Gaps = 51/278 (18%)
Query: 35 NSQYQAHFCLVSLEKCSTMR-ELKQIHAQMLRTSLFFD---------PCADYH----VRL 80
NS + SL ST + +L+QIHA++L L F + Y R
Sbjct: 15 NSGIHSDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQ 74
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF + P ++ N+I+RGY+ N +A L Y +M + + PD F FP L K+C +
Sbjct: 75 VFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSH 134
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ + +H+Q + G +D F+ N LI +Y+ C L
Sbjct: 135 LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIV 194
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+P EA++IF +M +VKP+ V LV+VL A +DL + +H V + G
Sbjct: 195 SAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLE 254
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN 261
+ +L +L Y KC V+ A LF KM P WN
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 50/213 (23%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHV-RLVF 82
S A CL LE+ + IHA +++ L +P C +++F
Sbjct: 227 SVLNAFTCLQDLEQG------RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILF 280
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK 142
++ +P + N+++ GY +A +HEMI + + PD S +CA + +
Sbjct: 281 DKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLE 340
Query: 143 Q---LHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------------- 174
Q + + D F+ + LI+M++ C ++
Sbjct: 341 QARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYG 400
Query: 175 ---QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q EAI ++ ME + V PN VT + +L A
Sbjct: 401 LHGQAREAISLYRAMERDGVHPNDVTFLGLLIA 433
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 57/264 (21%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFD-----------------PCADYHVRLVFSQIS 86
L+ C + L+ +HAQ+ R D CA R VF +
Sbjct: 126 LKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCA----RTVFEGLP 181
Query: 87 NP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVE 141
P TI + +IV Y EA + +M + PD S+ F D+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------------- 177
+ +H+ +K GL ++ L +L MY+ C + P+
Sbjct: 242 RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
+AI +F+ M ++V+P+ +++ + ++A A+ L + + + V S + V +
Sbjct: 302 GFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFIS 361
Query: 234 TTLMDAYCKCKFVSRAWDLFVKML 257
+ L+D + KC V A +F + L
Sbjct: 362 SALIDMFAKCGSVECARSVFDRTL 385
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 45/195 (23%)
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159
YTN +H ++F + SL S +Q+H++ + GL FL
Sbjct: 13 YTNSGIHSDSF-----------------YASLIDSSTHKAQLRQIHARLLVLGLQFSGFL 55
Query: 160 HNTLINMYSSCWCL--------DQP--------------------DEAIKIFYRMEIENV 191
LI+ SS + D P +A+ ++ +M++ V
Sbjct: 56 ITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARV 115
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P++ T ++L A L+ + VH V GF + V ++ L+ Y KC+ + A
Sbjct: 116 SPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCART 175
Query: 252 LFVKMLFPWNNYGQW 266
+F + P W
Sbjct: 176 VFEGLPLPERTIVSW 190
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 46/250 (18%)
Query: 53 MRELKQIHAQMLRTSLFFDP----------CADY-----HVRLVFSQISNPTIYTCNSIV 97
M +LKQIH+Q ++T P C + R +F I PT++ N+++
Sbjct: 1 MDQLKQIHSQTIKTGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTML 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-ADIYVE--KQLHSQAIKFGLA 154
+GY+ + Y +M+ ++PD + +P L K DI E K+LH +K+GL
Sbjct: 61 KGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLG 120
Query: 155 SDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRM 186
S+ F+ N LINMYS C D Q D+ +F+ M
Sbjct: 121 SNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEM 180
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E + V P++VTLV+VL+A ++ +DL + ++VHK + + S++ ++ L+D Y C +
Sbjct: 181 EKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEM 240
Query: 247 SRAWDLFVKM 256
S A +F M
Sbjct: 241 SVALGIFESM 250
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 92/361 (25%)
Query: 4 PLPLHHQTRTPALSSDNSPLIN----LDNINNNNINSQYQAHFCLVSLEKCSTMRELKQI 59
P H T S +SP + LD + N+ + Y F + +K K++
Sbjct: 51 PTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKEL 110
Query: 60 HAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLH 106
H +++ L + C + R +F + T N+++ Y +
Sbjct: 111 HCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQY 170
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTL 163
+ +HEM + ++P S+ +C+ D+ +++H + S+ + N L
Sbjct: 171 DKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENAL 230
Query: 164 INMYSSC--------------------WC--------LDQPDEAIKIF------------ 183
I+MY++C W + Q D A K F
Sbjct: 231 IDMYAACGEMSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWT 290
Query: 184 -------------------YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ M+ NVKP+ T+V++LTA A+ L + V +D++
Sbjct: 291 AMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKN 350
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPW---------NNYGQWAMSAT 271
+ + L+D Y KC V +A +F M F W N YG+ A+
Sbjct: 351 KVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMF 410
Query: 272 V 272
V
Sbjct: 411 V 411
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R F Q+ + +++ GY N EA + +HEM + PD F S+ +CA
Sbjct: 275 RKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQL 334
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD-------- 177
+ + + + + K + +D+++ N LI+MY C +++ PD
Sbjct: 335 GALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMI 394
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F +M +V P+ +T V VL A
Sbjct: 395 VGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCA 431
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 141/322 (43%), Gaps = 68/322 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC---------- 93
L S++ C +R +QIHAQ++ + L +D V F+ Y C
Sbjct: 9 LDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRL 68
Query: 94 -----NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLH 145
NS++ GY A Y M+ G +PD F FP L K+C++ +Q+H
Sbjct: 69 GSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVH 128
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW---CLDQP-------------------------D 177
+K GL +D ++ N+LI Y +C C + D
Sbjct: 129 GVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFD 188
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +F+RM++E P+ TLV+VL A AR DL T K +H + E F ++ L ++
Sbjct: 189 EAISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIHGVI-ERRFKVNLVLGNAML 244
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHK 297
D Y K A ++F ++ P + W + T GLV + H PK++ +
Sbjct: 245 DMYVKNGCFYEAKNIFDEL--PTRDIVSWTIMIT----GLV---QSDH------PKQSLE 289
Query: 298 LFFFSMLKKVHV-PGVLIQVHV 318
L FSM++ + + P +I V
Sbjct: 290 L--FSMMRTLGISPDAIILTSV 309
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 121/311 (38%), Gaps = 60/311 (19%)
Query: 45 VSLEKCSTM---RELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNP 88
V L+ CS RE +Q+H +++ L D C D+ VF ++
Sbjct: 110 VLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVR 169
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+ + NS++ G+ EA + M V+ P S+ +CA D+ K +H
Sbjct: 170 DVVSWNSLISGFMKAGHFDEAISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIH 226
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPD 177
I+ + L N +++MY C D P
Sbjct: 227 G-VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPK 285
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+++++F M + P+A+ L +VL+A A L VH+ +++ G + + T ++
Sbjct: 286 QSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIV 345
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK 293
D Y KC + A +F M F WN A+ + GLV ++
Sbjct: 346 DMYAKCGCIEMALKIFYSMSQRNTFTWN-----ALLCGLAMHGLVHEALNLFEVMIISGV 400
Query: 294 KAHKLFFFSML 304
K +++ F ++L
Sbjct: 401 KPNEITFLAIL 411
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 127/285 (44%), Gaps = 63/285 (22%)
Query: 44 LVSLEKCSTMRELKQ---IHAQMLRTSLF-FD------------PCADYHV-RLVFSQIS 86
+V++ CS+ ++LKQ +HA +L T L FD C D + R F ++
Sbjct: 62 VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV---QGLIPDRFMFPSLFKSC---ADIYV 140
T+ T N+++ GY+ H A Y +M+ +G+ PD F S +C DI
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
+++ ++ + G ASDS + N LINMYS C L+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+A+++F RM + KPN VT + +LTA DL + +H+ V E G+ S + +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVI 301
Query: 233 KTTLMDAYCKC-KFVSRAWDLFVKM----LFPWN-------NYGQ 265
L++ Y KC + A +F ++ + WN YGQ
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQ 346
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 36/220 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF ++ N + N+++ GY + +A + M P+ F L +C
Sbjct: 217 ARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WCL 173
D+ + +H + + G SD + N L+NMY+ C W +
Sbjct: 277 LEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNI 336
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
Q +A+ IF +M++ENV PN +TL NVL+A A R K VH +
Sbjct: 337 LIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGR 396
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ V L+ +LM+ Y +C + +F K L W+
Sbjct: 397 CKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWS 436
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 104/263 (39%), Gaps = 44/263 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF I +P + IV + + EA +Y M+++GL PD MF C+ D
Sbjct: 14 VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKD 73
Query: 138 IYVEKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQP----DE-------------- 178
+ + LH+ ++ L D L LI MY+ C L+ DE
Sbjct: 74 LKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133
Query: 179 ----------AIKIFYRM---EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
A+KI+ M E +KP+A+T + L A + D+ + + SG
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASG 193
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRH 281
+ S ++ L++ Y KC + A +F ++ + WN M + QG +
Sbjct: 194 YASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNT-----MISGYAKQGAATQA 248
Query: 282 STAHQISGPCPKKAHKLFFFSML 304
Q GP K + + F +L
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLL 271
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 126/304 (41%), Gaps = 81/304 (26%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCADY------HVRLVFS 83
Q H L L C + + LKQIH+Q+++T L + CA + L+F
Sbjct: 31 QNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFE 90
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-- 141
I P + N+++RG + + A FY M++ G+ P+ + FP L KSCA +
Sbjct: 91 SIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE 150
Query: 142 -KQLHSQAIKFGLASDSFLHNTLINM-------------------------------YSS 169
KQ+H +K GL SD F+H +LINM Y+
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210
Query: 170 CWCLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLVNV 201
CLD +EA+ F M+ NV PN T+V V
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKML 257
L+A A++ L V +++ G S++ L L+D Y KC + +A DLF K +
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDI 330
Query: 258 FPWN 261
WN
Sbjct: 331 ISWN 334
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 116/306 (37%), Gaps = 80/306 (26%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY-------------HVRLVF 82
+ Y F L S K +E KQIH +L+ L DP + LVF
Sbjct: 131 NSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVF 190
Query: 83 SQ------------ISNPTIYTC-------------------NSIVRGYTNKNLHHEAFL 111
S+ I+ T+ C N+++ GY EA
Sbjct: 191 SKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALA 250
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
F+ EM + P+ ++ +CA + + + S GL S+ L N LI+MYS
Sbjct: 251 FFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYS 310
Query: 169 SCWCLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLVN 200
C LD+ EA+ +F +M+ NV+PN VT V+
Sbjct: 311 KCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVS 370
Query: 201 VLTARARARDLRTVKRVHKCVDESGFW-SHVELKTTLMDAYCKCKFVSRAWDLFVKM--- 256
+L A A L K +H +D+ ++ L T+L+D Y KC + A +F M
Sbjct: 371 ILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPK 430
Query: 257 -LFPWN 261
L WN
Sbjct: 431 SLGSWN 436
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 115/255 (45%), Gaps = 49/255 (19%)
Query: 56 LKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQISNPTIYTCNSIVRGYTN 102
L QIHAQ+ + L ++ CA + R VF +P ++ N+I+R YT
Sbjct: 62 LNQIHAQLFVSRLQYNGFLITKLVNCCATLGEIRYARNVFDYYPDPDVFLWNAIIRCYTR 121
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEKQLHSQAIKFGLASDSF 158
+NL A Y M + + PD F FP + K+C A + + +++H QA + GL +D F
Sbjct: 122 QNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRHGLEADVF 181
Query: 159 LHNTLINMYSSC--------------------WCL--------DQPDEAIKIFYRMEIEN 190
+ N L+ Y+ C W QP EA++IF +M N
Sbjct: 182 VQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIFNQMREVN 241
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
VKP+ + LV+VL A DL K +H CV + G ++L +L Y KC V A
Sbjct: 242 VKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLISLTAMYAKCGQVMFAR 301
Query: 251 DLFVKMLFP----WN 261
F ++ P WN
Sbjct: 302 LFFDQVRIPNLILWN 316
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 103/245 (42%), Gaps = 44/245 (17%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNK 103
+++H Q R L F+ C + +VF ++S+ +I + SI+ GY
Sbjct: 165 RRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQN 224
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
EA +++M + PD+ S+ ++ D+ K +H IK GL + L
Sbjct: 225 GQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLL 284
Query: 161 NTLINMYSSC-------WCLDQ---------------------PDEAIKIFYRMEIENVK 192
+L MY+ C DQ +EA+++F RM N
Sbjct: 285 ISLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFG 344
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+++T+ +V+ A A+ L + + + S F + + + L+D + KC V A D+
Sbjct: 345 PDSITITSVILACAQMGSLELARWMSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDV 404
Query: 253 FVKML 257
F + L
Sbjct: 405 FDRAL 409
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 47/261 (18%)
Query: 43 CLVSLEKCSTMR-ELKQIHAQMLRTSLFFD-PCADYHVRL--------------VFSQIS 86
C+ L+ C++ + +LKQIHA +R + + P H+ VF+ I
Sbjct: 20 CISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIH 79
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
NP ++T N+I+RGY + AFLFY +M+V + PD +P L K+ + ++ +
Sbjct: 80 NPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEA 139
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+HS I+ G S F+ N+L+++Y++C + +
Sbjct: 140 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGR 199
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P+EA+ +F M +E V+P+ T+V++L+A A L +RVH + + G + + +
Sbjct: 200 PNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNS 259
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + A +F +M
Sbjct: 260 LLDLYAKCGAIREAQRVFSEM 280
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 46/256 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CADY------HVRLVFSQISNPTIY 91
++ C +M +LKQIH+Q + T L +P C + + R+VF + P +
Sbjct: 26 IKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHF 85
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVE--KQLHSQA 148
N++++GY+ + A Y EM+ +G++PD + +P L K D V+ ++LH
Sbjct: 86 VWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHI 145
Query: 149 IKFGLASDSFLHNTLINMYS--------------------SCWCL--------DQPDEAI 180
+K G +S+ F+ N LI++YS W + Q DE++
Sbjct: 146 VKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESM 205
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
K+F ME V P+++TLV+VL+A ++ +DL KRVH+ V + L+ L+D Y
Sbjct: 206 KLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMY 265
Query: 241 CKCKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 266 AACGDMDTALGIFDNM 281
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF + S + T N ++ GY E+ + EM ++P S+ +C+
Sbjct: 174 RGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKL 233
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
D+ V K++H + L N LI+MY++C +D A+ IF M+ +V
Sbjct: 234 KDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDT---ALGIFDNMKSRDV---- 286
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
++ ++T + + + E F S T ++D Y + LF +
Sbjct: 287 ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSW----TAMIDGYLQVNRFKEVLSLFRE 342
Query: 256 M 256
M
Sbjct: 343 M 343
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 39/161 (24%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F ++ + +++ GY N E + EM + PD F S+ +CA +
Sbjct: 306 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365
Query: 139 -------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
+++ + IK DSF+ N LI+MY +C +++
Sbjct: 366 GALELGEWIKAYIDKNEIKI----DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISW 421
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+EA+ +F +M ++ P+ VT + VL A
Sbjct: 422 TAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCA 462
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E + +F M+ N+KP+ T+V++LTA A L + + +D++ + L+
Sbjct: 335 EVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALI 394
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y C V +A +F M
Sbjct: 395 DMYFNCGNVEKAIRIFNAM 413
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 138/336 (41%), Gaps = 87/336 (25%)
Query: 18 SDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA--- 74
S N PL NI +A L L+ C + L+QIHA+++R+ L D
Sbjct: 14 SKNIPLTPRGNI---------RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRK 64
Query: 75 -----DYHVR-----LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
H R L+F QI NP +T N I+R T L +A + Y M+ QG+ D
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124
Query: 125 RFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHN-------------------- 161
+F FP + K+C + I + K +H IK+G + D F+ N
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 162 -----------TLINMYSSCWCLD----------------------------QPDEAIKI 182
T+I+ SC L QP+EA+++
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F RM+ EN+ PN T+V+++ A L + +H ++ V L T L+D Y K
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSK 304
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
C + A ++F M P + W +M ++G GL
Sbjct: 305 CGSIKDAIEVFETM--PRKSLPTWNSMITSLGVHGL 338
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 48/242 (19%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DI 138
+ + +++ NS++ EA + + GLIP R FP KSC+ D+
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------- 173
+ H QA FG +D F+ + LI+MYS C L
Sbjct: 1159 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 1218
Query: 174 ---DQPDEAIKIF-----YRMEIE---NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+Q D A+ +F E+E NV ++V +V+VL+A +R + VH V
Sbjct: 1219 VQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV 1278
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW----NNYGQWAMSATVGPQGLV 278
+ GF + + TLMDAY KC L K +F W ++ +M A GL
Sbjct: 1279 KKGFDGSIGVGNTLMDAYAKC-----GQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLS 1333
Query: 279 GR 280
G
Sbjct: 1334 GE 1335
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 44/249 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-------IP-DRFMFPS 130
R +F +I + + S++ GY A L + + + + +P D + S
Sbjct: 1197 RALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVS 1256
Query: 131 LFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-----------WCLDQP 176
+ +C+ + + + +H +K G + NTL++ Y+ C W ++
Sbjct: 1257 VLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKD 1316
Query: 177 D-----------------EAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVH 218
D EA+++F+ M V+ NAVTL VL A A A LR K +H
Sbjct: 1317 DISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIH 1376
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLV 278
V + +V + T+++D YCKC V A F +M N W +A V G+
Sbjct: 1377 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM--KEKNVKSW--TAMVAGYGMH 1432
Query: 279 GRHSTAHQI 287
GR A I
Sbjct: 1433 GRAKEALDI 1441
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
L++ +R K IH Q+++ L ++ C + + F ++ +
Sbjct: 1360 LLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 1419
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLH---S 146
+ ++V GY EA +++M+ G+ P+ F S+ +C+ VE+ H +
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNA 1479
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
K+ + + +++++ CL +EA + RM++ KP+ V ++L A
Sbjct: 1480 MKHKYDIEPGIEHYGCMVDLFGRAGCL---NEAYNLIKRMKM---KPDFVVWGSLLGA-- 1531
Query: 207 RARDLRTVKRVHKCVD 222
R+HK VD
Sbjct: 1532 --------CRIHKNVD 1539
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 116/257 (45%), Gaps = 50/257 (19%)
Query: 55 ELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTIYTCNSIVRGYT 101
+LKQIHA++L L F D R VF + P I+ N+I+RGY+
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSF 158
N +A L Y M + + PD F FP L K+C+ + + + +H+Q + G +D F
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 159 LHNTLINMYSSCWCLD------------------------------QPDEAIKIFYRMEI 188
+ N LI +Y+ C L +P EA++IF +M
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+VKP+ V LV+VL A +DL+ + +H V + G +L +L Y KC V+
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 249 AWDLFVKMLFP----WN 261
A LF KM P WN
Sbjct: 276 AKILFDKMKSPNLILWN 292
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 44/196 (22%)
Query: 53 MRELKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTIYTCNSIVRG 99
+++ + IHA +++ L +P C +++F ++ +P + N+++ G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA---SD 156
Y EA +HEMI + + PD S +CA + +Q S G + D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357
Query: 157 SFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEI 188
F+ + LI+M++ C ++ + EAI ++ ME
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417
Query: 189 ENVKPNAVTLVNVLTA 204
V PN VT + +L A
Sbjct: 418 GGVHPNDVTFLGLLMA 433
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 61/291 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCADYHV-----------------RLVFSQIS 86
L+ CS + L+ +HAQ+ R L FD AD V R VF +
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFR--LGFD--ADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 87 NP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVE 141
P TI + +IV Y EA + +M + PD S+ F D+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------------- 177
+ +H+ +K GL + L +L MY+ C + P+
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EAI +F+ M ++V+P+ +++ + ++A A+ L + +++ V S + V +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS 361
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ L+D + KC V A +F + L + SA + GL GR A
Sbjct: 362 SALIDMFAKCGSVEGARLVFDRTL----DRDVVVWSAMIVGYGLHGRAREA 408
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 45/195 (23%)
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159
YTN +H ++F + SL S KQ+H++ + GL FL
Sbjct: 13 YTNSGIHSDSF-----------------YASLIDSATHKAQLKQIHARLLVLGLQFSGFL 55
Query: 160 HNTLINMYSSCWCL--------DQP--------------------DEAIKIFYRMEIENV 191
LI+ SS + D P +A+ ++ M++ V
Sbjct: 56 ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P++ T ++L A + L+ + VH V GF + V ++ L+ Y KC+ + A
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSART 175
Query: 252 LFVKMLFPWNNYGQW 266
+F + P W
Sbjct: 176 VFEGLPLPERTIVSW 190
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 119/274 (43%), Gaps = 49/274 (17%)
Query: 38 YQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCADY----------HVRLVFSQ 84
Y C+ SL+ + + L K+IH+ ML P + + S
Sbjct: 35 YNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSI 94
Query: 85 ISNPT----IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
S+PT ++ N+I+ G+ E F FY +M +G+IPD+F FP K+C D+
Sbjct: 95 FSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE 154
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------- 174
K++H KFGL D F+ + L+N Y ++
Sbjct: 155 IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQ 214
Query: 175 --QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
Q + ++ F RM E+V P+ T+ VL+ A DL + +H + G+ S V +
Sbjct: 215 IGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAV 274
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+L+D Y KCK + A ++F M +F WN+
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 124/278 (44%), Gaps = 59/278 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY----HVRLVFSQISN 87
L LE C ++ EL Q+H M+++S+ F C + + R VF I
Sbjct: 10 LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
P++Y NS++RGY+N +A +FY EM+ +G PD F FP + K+C+ DI +
Sbjct: 70 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC---------------WCL-------------DQP 176
H +K G + ++ L++MY C W + ++
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF--------WS 228
+AI+ F M+ VK N +V++L A R +D+ T K H + GF
Sbjct: 190 SDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGF 249
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+V L T+L+D Y KC + A LF M L WN+
Sbjct: 250 NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNS 287
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 63 MLRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
+L TSL + C D R +F + T+ + NSI+ GY+ EA + +M+
Sbjct: 252 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 311
Query: 120 GLIPDRFMF-----PSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS----- 169
G+ PD+ F S+ + C+ + + +H+ K G D+ + L+NMY+
Sbjct: 312 GIAPDKVTFLSVIRASMIQGCSQL--GQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAE 369
Query: 170 ---------------CWCL--------DQPDEAIKIFYRM-EIENVKPNAVTLVNVLTA 204
W + +EA+ IF RM E N P+ +T + VL A
Sbjct: 370 SAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYA 428
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 49/258 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTI 90
LEKC ++ +LKQI +QM+ T L D CA DY ++F+ NP
Sbjct: 13 LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNT-RNPNT 71
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
++ N +RG+ + EA + Y ++ G PD + +P LFK+CA I + ++
Sbjct: 72 FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILG 131
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------E 178
+ G SD F+ N +I++ SC LD E
Sbjct: 132 HVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYE 191
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ + M++E +KP+ VT++ V+++ A+ DL + H ++E+G V L LMD
Sbjct: 192 ALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMD 251
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC + A LF M
Sbjct: 252 MYMKCGNLESARKLFDSM 269
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 70/276 (25%)
Query: 73 CADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C D R +F + + + NS++ GY + +EA FY EM V+G+ PD +
Sbjct: 155 CGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGV 214
Query: 132 FKSCADI-----------YVEKQ-----------LHSQAIKFG-LAS-----DSFLHNTL 163
SCA + Y+E+ L +K G L S DS + T+
Sbjct: 215 VSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTM 274
Query: 164 I------------NMYSSCWCL--DQPD--------------------EAIKIFYRMEIE 189
+ + W L + PD EA+ +F M+
Sbjct: 275 VSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAM 334
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
N+ P+ VT+V+ L+A ++ L +H +++ +V L T L+D Y KC +++A
Sbjct: 335 NINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKA 394
Query: 250 WDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAH 285
+F ++ P N W +A + L H AH
Sbjct: 395 IQVFQEL--PGRNSLTW--TAIISGLAL---HGNAH 423
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 115/257 (44%), Gaps = 50/257 (19%)
Query: 55 ELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTIYTCNSIVRGYT 101
+LKQIHA++L L F D R VF + P I+ N+I+RGY+
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSF 158
N +A L Y M + + PD F FP L K+C+ + + + +H+Q + G +D F
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 159 LHNTLINMYSSCWCLD------------------------------QPDEAIKIFYRMEI 188
+ N LI +Y+ C L +P EA++IF M
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRK 215
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+VKP+ V LV+VL A +DL+ + +H V + G +L +L Y KC V+
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 249 AWDLFVKMLFP----WN 261
A LF KM P WN
Sbjct: 276 AKILFDKMKSPNLILWN 292
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 44/196 (22%)
Query: 53 MRELKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTIYTCNSIVRG 99
+++ + IHA +++ L +P C +++F ++ +P + N+++ G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA---SD 156
Y EA +HEMI + + PD S +CA + +Q S G + D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357
Query: 157 SFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEI 188
F+ + LI+M++ C ++ + EAI ++ ME
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417
Query: 189 ENVKPNAVTLVNVLTA 204
V PN VT + +L A
Sbjct: 418 GGVHPNDVTFLGLLMA 433
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 116/291 (39%), Gaps = 61/291 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCADYHV-----------------RLVFSQIS 86
L+ CS + L+ +HAQ+ R L FD AD V R VF +
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFR--LGFD--ADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 87 NP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVE 141
P TI + +IV Y EA + M + PD S+ F D+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------------- 177
+ +H+ +K GL + L +L MY+ C + P+
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EAI +F+ M ++V+P+ +++ + ++A A+ L + +++ V S + V +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS 361
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ L+D + KC V A +F + L + SA + GL GR A
Sbjct: 362 SALIDMFAKCGSVEGARLVFDRTL----DRDVVVWSAMIVGYGLHGRAREA 408
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 45/195 (23%)
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159
YTN +H ++F + SL S KQ+H++ + GL FL
Sbjct: 13 YTNSGIHSDSF-----------------YASLIDSATHKAQLKQIHARLLVLGLQFSGFL 55
Query: 160 HNTLINMYSSCWCL--------DQP--------------------DEAIKIFYRMEIENV 191
LI+ SS + D P +A+ ++ M++ V
Sbjct: 56 ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P++ T ++L A + L+ + VH V GF + V ++ L+ Y KC+ + A
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSART 175
Query: 252 LFVKMLFPWNNYGQW 266
+F + P W
Sbjct: 176 VFEGLPLPERTIVSW 190
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 50/277 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTI 90
++KC++M +LKQIHAQM+ TS D CA +Y ++L F I +P I
Sbjct: 56 VDKCTSMTQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKL-FKSIQDPNI 114
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE--KQLHSQA 148
+ N+I+R N + +A FY +M+ G+ P+++ FP L K C+ ++ KQ+H+
Sbjct: 115 FMWNTIIRALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGCSFCSIQSCKQIHTHV 174
Query: 149 IKFGLASDSFLHNTLINMYS------SCWCL--DQPD--------------------EAI 180
+KFG D + N L+ +YS W L + P+ EA+
Sbjct: 175 LKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSIWTTMISGYAQNFCANEAL 234
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F RM E +PN T+ +VL+ AR+ L +R+H + E G V L T L+ Y
Sbjct: 235 VLFERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFMIERGVEIGVILGTALVHMY 294
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
K + A LF M N W AM + G
Sbjct: 295 AKNGKILVARKLFDSM--TEKNVATWNAMLCGLASHG 329
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 138/336 (41%), Gaps = 87/336 (25%)
Query: 18 SDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA--- 74
S N PL NI +A L L+ C + L+QIHA+++R+ L D
Sbjct: 14 SKNIPLTPRGNI---------RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRK 64
Query: 75 -----DYHVR-----LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
H R L+F QI NP +T N I+R T L +A + Y M+ QG+ D
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124
Query: 125 RFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHN-------------------- 161
+F FP + K+C + I + K +H IK+G + D F+ N
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 162 -----------TLINMYSSCWCLD----------------------------QPDEAIKI 182
T+I+ SC L QP+EA+++
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F RM+ EN+ PN T+V+++ A L + +H ++ V L T L+D Y K
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSK 304
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
C + A ++F M P + W +M ++G GL
Sbjct: 305 CGSIKDAIEVFETM--PRKSLPTWNSMITSLGVHGL 338
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 48/242 (19%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DI 138
+ + +++ NS++ EA + + GLIP R FP KSC+ D+
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------- 173
+ H QA FG +D F+ + LI+MYS C L
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 2091
Query: 174 ---DQPDEAIKIF-----YRMEIE---NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+Q D A+ +F E+E NV ++V +V+VL+A +R + VH V
Sbjct: 2092 VQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV 2151
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW----NNYGQWAMSATVGPQGLV 278
+ GF + + TLMDAY KC L K +F W ++ +M A GL
Sbjct: 2152 KKGFDGSIGVGNTLMDAYAKC-----GQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLS 2206
Query: 279 GR 280
G
Sbjct: 2207 GE 2208
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 44/250 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-------IP-DRFMFP 129
R +F +I + + S++ GY A L + + + + +P D +
Sbjct: 2069 ARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMV 2128
Query: 130 SLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-----------WCLDQ 175
S+ +C+ + + + +H +K G + NTL++ Y+ C W ++
Sbjct: 2129 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 2188
Query: 176 PD-----------------EAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRV 217
D EA+++F+ M V+ NAVTL VL A A A LR K +
Sbjct: 2189 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCI 2248
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGL 277
H V + +V + T+++D YCKC V A F +M N W +A V G+
Sbjct: 2249 HDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM--KEKNVKSW--TAMVAGYGM 2304
Query: 278 VGRHSTAHQI 287
GR A I
Sbjct: 2305 HGRAKEALDI 2314
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
L++ +R K IH Q+++ L ++ C + + F ++ +
Sbjct: 2233 LLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 2292
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLH---S 146
+ ++V GY EA +++M+ G+ P+ F S+ +C+ VE+ H +
Sbjct: 2293 KSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNA 2352
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
K+ + + +++++ CL +EA + RM++ KP+ V ++L A
Sbjct: 2353 MKHKYDIEPGIEHYGCMVDLFGRAGCL---NEAYNLIKRMKM---KPDFVVWGSLLGA-- 2404
Query: 207 RARDLRTVKRVHKCVD 222
R+HK VD
Sbjct: 2405 --------CRIHKNVD 2412
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 43/244 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
RLVF ++ + + +++ G EA Y EM G+ P+R + S+ +C
Sbjct: 383 RLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSP 442
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD-------- 177
A + +++H Q ++ GLA+D+ + NTL+NMYS C + Q D
Sbjct: 443 AALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMI 502
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+K+F R++ E +KP+ VT +N+L A A + L + +H V + GF+
Sbjct: 503 GGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFF 562
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHST 283
S + L+ Y KC S A +F KM + WN A +G GR
Sbjct: 563 SDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWN--------AIIGGSAQHGRGQD 614
Query: 284 AHQI 287
A Q+
Sbjct: 615 ALQL 618
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 32/221 (14%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C Y R VF ++ N + N+++ G EA Y++M +G++P++
Sbjct: 271 MYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKIT 330
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------- 177
+ L +C A ++ K++HS+ K G SD + N LI+MYS C +
Sbjct: 331 YVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMV 390
Query: 178 ---------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
EA+ ++ M+ V+PN VT ++L A + L +R
Sbjct: 391 RKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRR 450
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+H+ V E+G + + TL++ Y C V A +F +M+
Sbjct: 451 IHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI 491
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 53/305 (17%)
Query: 57 KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
++IH Q ++ L FD C R VF ++ ++ + + GY +
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQAIKFGLASDSFLH 160
AF + +M +G++P+R + S+ F S A + K +HS+ + G SD+ +
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVG 265
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
L+ MY+ C +EA +++ +M+ E V
Sbjct: 266 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM 325
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
PN +T V +L A + L K +H V ++GF S + ++ L+ Y +C + A +
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLV 385
Query: 253 FVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVH 308
F KM + W AM + G T +Q + +++ + S+L
Sbjct: 386 FDKMVRKDVISWT-----AMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACS 440
Query: 309 VPGVL 313
P L
Sbjct: 441 SPAAL 445
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 53/269 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLR-------------TSLFFDPCADYHVRLVFSQIS--NP 88
L++C +++L +Q+H +++ +++ + R V+ ++S
Sbjct: 30 LKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMER 89
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
T+++ N++V GY +A +M GL PDR S SC + +++H
Sbjct: 90 TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIH 149
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE--------------------------- 178
QA++ GL D + N ++NMY+ C +++ E
Sbjct: 150 FQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSE 209
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A +IF +ME E V PN +T ++VL A + L+ K VH + +G S + T L+
Sbjct: 210 TAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALV 269
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
Y KC +F K+ L WN
Sbjct: 270 KMYAKCGSYKDCRQVFEKLVNRDLIAWNT 298
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 47/217 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTI 90
L CS+ L ++IH Q++ L D C R VF ++ I
Sbjct: 436 LNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDI 495
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
N+++ GY NL EA + + +GL PD+ + ++ +CA+ + +++H+
Sbjct: 496 VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTL 555
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
K G SD+ + N L++ Y+ C + +A
Sbjct: 556 VRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDA 615
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+++F RM++E VKP+ VT V++L+A + A L +R
Sbjct: 616 LQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRR 652
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 92/235 (39%), Gaps = 48/235 (20%)
Query: 119 QGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
QG + + + K C D+ +Q+H I+ D + N LINMY C +++
Sbjct: 17 QGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEE 76
Query: 176 P------------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
++A+K+ +M+ + P+ T+++ L++
Sbjct: 77 ARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSC 136
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L + +H ++G V++ +++ Y KC + A ++F KM + W
Sbjct: 137 KSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSW- 195
Query: 262 NYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKA---HKLFFFSMLKKVHVPGVL 313
+ T+G GR TA +I ++ +++ + S+L P L
Sbjct: 196 -------TITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAAL 243
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 52/294 (17%)
Query: 21 SPLI-NLDNINN--NNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCA 74
SPL N +I+ + Y C+ SL+ + + L K+IH+ ML P +
Sbjct: 15 SPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLS 74
Query: 75 DY----------HVRLVFSQISNPT----IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG 120
+ S S+PT ++ N+I+ G+ E F FY +M +G
Sbjct: 75 ITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEG 134
Query: 121 LIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------ 174
+IPD+F FP K+C D+ K++H KFGL D F+ + L+N Y ++
Sbjct: 135 VIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 194
Query: 175 ----------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
Q + ++ F RM E+V P+ T+ VL+ A DL
Sbjct: 195 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ +H + G+ S V + +L+D Y KCK + A ++F M +F WN+
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 44/249 (17%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVR 98
+ + KQIH +R+ + + C + + +F ++ + + N+I+
Sbjct: 236 ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS 155
GY+ + HHEA F++ M V+G+ P+ S+ +CA ++ +Q+H AI+ G S
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFES 355
Query: 156 DSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRME 187
+ + N L+NMY+ C ++ P EA+ +F M+
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQ 415
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+ +KP++ +V+VL A A L K++H SGF S+V + T L+D Y KC V+
Sbjct: 416 AQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVN 475
Query: 248 RAWDLFVKM 256
A LF +M
Sbjct: 476 TAQKLFERM 484
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 33/221 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF ++ + + N+I+ GY+ +EA + EM V G+ P+ S+ CA
Sbjct: 173 NARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCA 232
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ KQ+H AI+ G+ SD + N L+NMY+ C ++
Sbjct: 233 HLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNA 292
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
Q EA+ F RM++ +KPN++T+V+VL A A L +++H SG
Sbjct: 293 IIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSG 352
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
F S+ + L++ Y KC V+ A+ LF +M P N W
Sbjct: 353 FESNDVVGNALVNMYAKCGNVNSAYKLFERM--PKKNVVAW 391
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 37/260 (14%)
Query: 56 LKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115
+ Q+ ++T+ CA+ + + I N + +I+ GY ++A Y++
Sbjct: 53 VAQLRRNKVKTTREVSACAN-QTQFTQTDIRNNAVVWKETII-GYVKNGFWNKALRLYYQ 110
Query: 116 MIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M G+ PD+ +F S+ K+C D+ +++H I G SD + L +MY+ C
Sbjct: 111 MQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGS 170
Query: 173 LD----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
L+ QP EA+ +F M++ +KPN+ TLV+V+
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264
A L K++H SG S V + L++ Y KC V+ A LF +M P +
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERM--PIRDVA 288
Query: 265 QWAMSATVGPQGLVGRHSTA 284
W +A +G L +H A
Sbjct: 289 SW--NAIIGGYSLNSQHHEA 306
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTIYTCNSIVR 98
+ + +QIH +R+ + C + + +F ++ + N+I+
Sbjct: 337 ALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIIS 396
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS 155
GY+ HEA + EM QG+ PD F S+ +CA KQ+H I+ G S
Sbjct: 397 GYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFES 456
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ + L+++Y+ C + A K+F RM ++V
Sbjct: 457 NVVVGTGLVDIYAKC---GNVNTAQKLFERMPEQDV 489
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 137/321 (42%), Gaps = 85/321 (26%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVF 82
+++ + LV L+KCS ++LKQ+H +++R L +D + Y + LVF
Sbjct: 21 TRFGSEEALVLLQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVF 80
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIY 139
Q++ P ++T N ++R +T A L + M+ QG PD+F +P + +C + +
Sbjct: 81 DQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALD 140
Query: 140 VEKQLHSQAIKFGLASDSFLHNTL-------------------------------INMYS 168
+ H+ AIK G D ++ NT+ I+
Sbjct: 141 LGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLV 200
Query: 169 SCWCLD----------------------------QPDEAIKIFYRME-IENVKPNAVTLV 199
+C LD QP EA +F RM+ ++NV+PN TLV
Sbjct: 201 ACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLV 260
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VK 255
+++ A L+ +RVH ++GF L T L+D Y KC ++ A +F V+
Sbjct: 261 SLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVR 320
Query: 256 MLFPWNNYGQWAMSATVGPQG 276
L WN M ++G G
Sbjct: 321 TLATWN-----TMITSLGVHG 336
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
++IH+++++ FD C RL+F+++ I + +++ G
Sbjct: 466 REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
L EA + +M GL P+R + S+ +C A + +++H Q I+ GLA+D+ +
Sbjct: 526 GLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVA 585
Query: 161 NTLINMYSSCWC----------LDQPD------------------EAIKIFYRMEIENVK 192
NTL+NMYS C + Q D EA+K+F R++ E +K
Sbjct: 586 NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 645
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ VT +N+L A A + L K +H V + G+ S L L+ Y KC S A +
Sbjct: 646 PDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLV 705
Query: 253 FVKML----FPWN 261
F KM+ WN
Sbjct: 706 FDKMMKRNVISWN 718
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 32/220 (14%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C Y R VF ++ N + N+++ G EA YH+M +G++P++
Sbjct: 389 MYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKIT 448
Query: 128 FPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------- 177
+ L +C + ++ +++HS+ +K G D + N LI+MY+ C +
Sbjct: 449 YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMV 508
Query: 178 ---------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
EA+ +F M+ +KPN VT ++L A + L +R
Sbjct: 509 RKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRR 568
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+H+ V E+G + + TL++ Y C V A +F +M
Sbjct: 569 IHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 127/329 (38%), Gaps = 65/329 (19%)
Query: 45 VSLEKCSTMREL------------KQIHAQMLRTSLFFD------------PCADYH-VR 79
++L + +TMR L ++IH + ++ L FD C H R
Sbjct: 240 LALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAR 299
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCA 136
VF ++ ++ + I+ GY + AF + +M +G++P+R + ++ F A
Sbjct: 300 EVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPA 359
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
+ K +HS + G SD + L+ MY+ C
Sbjct: 360 ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+EA +I+++M+ E + PN +T V +L A L + +H V + GF
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ ++ L+ Y +C + A LF KM + W AM + GL
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWT-----AMIGGLAKSGLGAEALAV 534
Query: 285 HQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
Q K +++ + S+L P L
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAAL 563
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 47/217 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTI 90
L CS+ L ++IH Q++ L D C R VF +++ I
Sbjct: 554 LNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
N+++ GY NL EA + + +GL PD+ + ++ +CA+ + K++HS
Sbjct: 614 VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSL 673
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
+K G SD+ L N L++ Y+ C + +
Sbjct: 674 VLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDV 733
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+++F RM++E +KP+ VT V++L+A + A L +R
Sbjct: 734 LQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRR 770
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 35/211 (16%)
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEK 142
+ T+++ N++V GY EA EM GL R L SC + + +
Sbjct: 205 TERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGR 264
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------------ 178
++H +A+K L D + N ++NMY+ C + + E
Sbjct: 265 EIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCG 324
Query: 179 ----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
A +IF +M+ E V PN +T +NVL A + L+ K VH + +G S + + T
Sbjct: 325 HSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGT 384
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+ Y KC +F K+ L WN
Sbjct: 385 ALVKMYAKCGSYKDCRQVFEKLVNRDLIAWN 415
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 137/308 (44%), Gaps = 81/308 (26%)
Query: 22 PLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA------- 74
PL L + NN +Q+ AH L L C M +LKQIHAQ LR++L P +
Sbjct: 12 PLRILTSSKPNNSLNQHHAHL-LGYLNDCKDMSQLKQIHAQALRSTLPDSPHSLFLYSKI 70
Query: 75 ---------DYHVRLVFSQISNPTIYTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIP 123
DY RL FS+ NP + N+++R + ++FL Y MI QG ++P
Sbjct: 71 LHFSSFNDLDYAYRL-FSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIEQGAVLP 129
Query: 124 DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-------- 172
D+ +P + K+CA ++ KQ+H+Q +K G SD +++N+LI+ Y+SC C
Sbjct: 130 DKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSEPAQYVF 189
Query: 173 --------------------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
+ D A+K+F +++ E +P+ T+ +VL A A
Sbjct: 190 DKMPARSLVSWNAMIDALVQFGEFDAALKLFVQLQ-ELFEPDGYTMQSVLNACAGL---- 244
Query: 213 TVKRVHKCVDESGFWSH--------------VELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
C G W H V + L+D YCKC + A +F +M
Sbjct: 245 -------CALSLGMWVHAYMLRKFDVEVTLDVLVDNCLLDMYCKCGSLDIAMQVFERMHK 297
Query: 257 --LFPWNN 262
+ WN+
Sbjct: 298 RDITSWNS 305
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 79/295 (26%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPTI 90
V ++K T+ L QIHA + R L P DY V L F + NP++
Sbjct: 35 VLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVAL-FGRTQNPSV 93
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
+ +I+ G+ + LH +A FY +M+ QG+ P+ F F S+ K C I K LHSQA+K
Sbjct: 94 FFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP-IEPGKALHSQAVK 152
Query: 151 FGLASDSFLHNTLINMYSS----------------------------------------- 169
G SD ++ L+++Y+
Sbjct: 153 LGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 212
Query: 170 ----------CWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
CW + P+EA+ +F RM KPN VT+++VL+A + L
Sbjct: 213 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ + VH ++ +G +V + T L+D Y KC + A +F K+ + WN+
Sbjct: 273 ESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNS 327
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R++F + N ++ GYT + +EA + + M+ P+ S+ +C +
Sbjct: 210 RVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQL 269
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ +HS G+ + + L++MYS C L+
Sbjct: 270 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 329
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGF 226
EA+++F M + P +T + +L+A + + + +K DE G
Sbjct: 330 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 389
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E +++ + V +A++L M
Sbjct: 390 EPKIEHYGCMVNLLGRAGHVEQAYELVKNM 419
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 53/270 (19%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISN 87
H C K T+ E KQ+HA ML T + P + + RL F ++
Sbjct: 19 HLC----TKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTK 74
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
++ N ++ GY EA YH+M V PD + + S+ +CA + K
Sbjct: 75 GDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKL 134
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
++ + I G D + N LINM+ C ++
Sbjct: 135 IYDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGF 194
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+++FY M+ E+VK N VT+ +VL A A+ DL+ K +H + G + +
Sbjct: 195 ADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNA 254
Query: 236 LMDAYCKCKFVSRAWDLFVKML----FPWN 261
L+D Y KC + A +F KML WN
Sbjct: 255 LIDMYAKCGSIGSAQKVFDKMLQRDVVSWN 284
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
F C +++ + Q GL D NTLI Y+ D+ +++F +M++ V
Sbjct: 296 FDECMELFRKMQCA------GLKIDVITWNTLITAYAQN---GYGDQTLELFQQMQLRGV 346
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
KPN++T+ +VL+A A L+ KR+H V+ S S + + L+D
Sbjct: 347 KPNSITIASVLSACAAVSALQEGKRIHDLVNRSECKSDICVGNALID 393
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD---------------PCADYHVRL-VFSQISNPTI 90
L++C T+++LKQ+HA +L+T D P L +F I P
Sbjct: 32 LQQCKTIKDLKQVHAHLLKTRRHLDSTVTENLLESAAIILPATTMEYALSIFDNIDGPDS 91
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQ 147
N ++R +T K +A F+ +M+ + + D F FP K+C+ + KQ+H+Q
Sbjct: 92 SAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEGKQIHAQ 151
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+K+G S+ + NTLI+MY++C ++ ++
Sbjct: 152 IVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKSGYYEDT 211
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F M V N +TL++VL A R D+ + + K V +G ++ L T L+D
Sbjct: 212 VRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLVTALVDM 271
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC V +A LF +M
Sbjct: 272 YAKCGEVDKARRLFDQM 288
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 46 SLEKCSTMR---ELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPT 89
+L+ CS +R E KQIHAQ+++ + C + + R +F +S
Sbjct: 132 TLKACSRLRGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERD 191
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
I+ NS+ GY + + + EM G+ + S+ +C AD+ + + +
Sbjct: 192 IFAWNSMFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAK 251
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
GL + L L++MY+ C +D+ E
Sbjct: 252 YVRVNGLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQE 311
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ +F M++ N+ PN VT+V+VL+ A L T K +H + G V L T L+D
Sbjct: 312 AVDLFNEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVD 371
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC V A ++F L P N W
Sbjct: 372 FYGKCGLVDSAIEVF--QLMPVKNVYSW 397
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 121/273 (44%), Gaps = 66/273 (24%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY----HVRLVFSQISN 87
L LE C +M EL Q+H M+++S+ F C + + R VF I
Sbjct: 9 LSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 68
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
P++Y NS++RGY+N +A +FY EM+ +G PD F FP + K+C+ DI +
Sbjct: 69 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 128
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC----WCL----DQP-------------------- 176
H +K G + ++ L++MY C W L D P
Sbjct: 129 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRF 188
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD---ESGFWSHVELK 233
+AI+ F M+ VKPN +V++L A R C D +S F +V L
Sbjct: 189 SDAIEAFREMQSIGVKPNETIMVDLLVACGR------------CFDPYCQSKFEFNVILA 236
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
T+L+D Y KC + A LF M L WN+
Sbjct: 237 TSLIDMYAKCGDMRTARYLFDGMPERNLVSWNS 269
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 63 MLRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
+L TSL + C D R +F + + + NSI+ GY+ EA + +M+
Sbjct: 234 ILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDL 293
Query: 120 GLIPDRFMF-----PSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS----- 169
G+ PD+ F S+ + C+ + + +H+ K G D+ + L+NMY+
Sbjct: 294 GIAPDKVTFFSVIRASMIQGCSQL--GQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAE 351
Query: 170 ---------------CWCL--------DQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTA 204
W + ++A+ IF RM+ E N P+ +T + VL A
Sbjct: 352 SAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYA 410
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
++ N++I YS+ PD+A+ + M + P+ T VL A + RD++ V
Sbjct: 72 YIWNSMIRGYSNS---PNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 128
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
H V ++GF ++ + T L+ Y C V+ W L V P N W
Sbjct: 129 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVN--WGLRVFEDIPKLNVVAWG 176
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 52/260 (20%)
Query: 55 ELKQIHAQMLRTSLFFDP--------CA-DY----HVRLVFSQISNPTIYTCNSIVRGYT 101
+LK IHA++LR L D CA D+ + +LVFSQ+ P I+ N+++RG
Sbjct: 31 QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLV 90
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSF 158
+K+ +A Y M G +P+ F P + K+CA D+ + ++HS +K G D F
Sbjct: 91 SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150
Query: 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV--------------------------- 191
+ +L+++Y C D D+A+K+F + +NV
Sbjct: 151 VKTSLLSLYVKC---DNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207
Query: 192 ----KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
KP++ +LV VL A AR D + + + + + +SG +V + T+L+D Y KC +
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267
Query: 248 RAWDLFVKMLFPWNNYGQWA 267
RA +F M P + W+
Sbjct: 268 RANLIFSAM--PEKDIVSWS 285
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 60 HAQMLRTSLF--FDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
H ++TSL + C ++ L VF I + + + +I+ GY + EA + ++
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206
Query: 117 IVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ GL PD F + +CA D + + G+ + F+ +L++MY C L
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266
Query: 174 DQ----------------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
++ P +A+ +F++M+ EN+KP+ T+V VL+A
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A L +D + F S+ L T L+D Y KC V++AW++F M
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 45/246 (18%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
L+FS + I + +++++GY L +A + +M + L PD + + +CA +
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATL- 329
Query: 140 VEKQLHSQAIKFGLASDS------FLHN-----TLINMYSSCWCLDQPDEAIKIFYRMEI 188
A+ G+ + S FL N LI+MYS C + Q A +IF M+
Sbjct: 330 -------GALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQ---AWEIFTAMKR 379
Query: 189 EN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC---K 244
++ V NA+ + + A+A V + V++ G + T + C C
Sbjct: 380 KDRVVWNAMMVGLSMNGHAKA-----VFSLFSLVEKHGIRPD---ENTFIGLLCGCTHGG 431
Query: 245 FVSRAWDLFVKM-----LFP-WNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKL 298
FV+ F M L P +YG M +G GL+ + AHQ+ P K + +
Sbjct: 432 FVNEGRQFFNNMKRVFSLTPSIEHYG--CMVDLLGRAGLL---NEAHQLINNMPMKPNAV 486
Query: 299 FFFSML 304
+ ++L
Sbjct: 487 VWGALL 492
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 50/249 (20%)
Query: 55 ELKQIHAQMLRTSLFFDP--------CA-DY----HVRLVFSQISNPTIYTCNSIVRGYT 101
+LK IHA++LR L D CA D+ + +LVFSQ+ P I+ N+++RG
Sbjct: 31 QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLV 90
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSF 158
+K+ +A Y M G +P+ F P + K+CA D+ + ++HS +K G D F
Sbjct: 91 SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150
Query: 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV--------------------------- 191
+ +L+++Y C D D+A+K+F + +NV
Sbjct: 151 VKTSLLSLYVKC---DNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207
Query: 192 ----KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
KP++ +LV VL A AR D + + + + + +SG +V + T+L+D Y KC +
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267
Query: 248 RAWDLFVKM 256
RA +F M
Sbjct: 268 RANLIFSAM 276
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 60 HAQMLRTSLF--FDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
H ++TSL + C ++ L VF I + + + +I+ GY + EA + ++
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206
Query: 117 IVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ GL PD F + +CA D + + G+ + F+ +L++MY C L
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266
Query: 174 DQ----------------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
++ P +A+ +F++M+ EN+KP+ T+V VL+A
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A L +D + F S+ L T L+D Y KC V++AW++F M
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 45/246 (18%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
L+FS + I + +++++GY L +A + +M + L PD + + +CA +
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATL- 329
Query: 140 VEKQLHSQAIKFGLASDS------FLHN-----TLINMYSSCWCLDQPDEAIKIFYRMEI 188
A+ G+ + S FL N LI+MYS C + Q A +IF M+
Sbjct: 330 -------GALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQ---AWEIFTAMKK 379
Query: 189 EN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC---K 244
++ V NA+ + + A+A V + V++ G + T + C C
Sbjct: 380 KDRVVWNAMMVGLSMNGHAKA-----VFSLFSLVEKHGIRPD---ENTFIGLLCGCTHGG 431
Query: 245 FVSRAWDLFVKM-----LFP-WNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKL 298
FV+ F M L P +YG M +G GL+ + AHQ+ P K + +
Sbjct: 432 FVNEGRQFFNNMKRVFSLTPSIEHYG--CMVDLLGRAGLL---NEAHQLINNMPMKPNAV 486
Query: 299 FFFSML 304
+ ++L
Sbjct: 487 VWGALL 492
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 59/305 (19%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIH 60
MAA L H T PA + + L N N I +++++ S +KC TM ELKQ+H
Sbjct: 1 MAATL--HLSTLIPATPTS----VALPNQNELKILTKHRSS-PTGSFKKCKTMTELKQLH 53
Query: 61 AQMLRTSLFFDP---------CADYHV--RLVFSQ------ISNPTI----YTCNSIVRG 99
+Q+ + L P C + L ++Q I + I Y +S++RG
Sbjct: 54 SQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRG 113
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASD 156
++ L ++A + + +++ G +PD F FP + +C A + Q+H +K G D
Sbjct: 114 FSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERD 173
Query: 157 SFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEI 188
F+ N+LI+ Y C +D EA+ +F+ M
Sbjct: 174 MFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVE 233
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++PN+VT+V V++A A+ +DL+ ++V C+ E + + L+D Y KC + +
Sbjct: 234 VGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDK 293
Query: 249 AWDLF 253
A +F
Sbjct: 294 ARKIF 298
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 17/251 (6%)
Query: 50 CSTMRELK-QIHAQMLRT--SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
C+ + EL+ +++A M+ ++ A R +F + + + N+I+ Y + L
Sbjct: 263 CTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLA 322
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTL 163
E EM+ G PDR S +C+ D+ K H ++ GL + N +
Sbjct: 323 REVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAI 382
Query: 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
INMY C + + A ++F RM + V+ +++ R D+ + ++ + +
Sbjct: 383 INMYMKC---GKQEMACRVFDRM----LNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPD 435
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
S S T++ A + A +LF M + M G +G
Sbjct: 436 SDLVSW----NTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDL 491
Query: 284 AHQISGPCPKK 294
A I G KK
Sbjct: 492 AKWIHGYIKKK 502
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 122/261 (46%), Gaps = 51/261 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTC 93
L+ C + ELK+IHA +++ SL D C Y + L+F +++P +
Sbjct: 66 LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLY 125
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI-----VQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
N+++R Y + ++ A Y +M+ + PD+F FP + KSCA + + KQ+H
Sbjct: 126 NAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVH 185
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------- 176
KFG S++ + N+L+ MY C LD
Sbjct: 186 GHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGC 245
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+A++ F RM++ ++P+ ++LV+VL A+ L K +H D++GF ++ +
Sbjct: 246 YADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNA 305
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L++ Y KC + + LF +M
Sbjct: 306 LIEMYAKCGSIDQGRRLFDQM 326
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 122/287 (42%), Gaps = 78/287 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCAD---------------YHVRLVFSQISN-PTI 90
LEKCS+M ELKQIHAQM +T + + ++VF +S+ P
Sbjct: 17 LEKCSSMMELKQIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAKIVFDSLSSRPNT 76
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEK--QLHSQ 147
Y N+++RGY + N EA + YH+M+ + + + FP L K+C+ + +EK Q+H+Q
Sbjct: 77 YIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQVHAQ 136
Query: 148 AIKFGLASD-----SFLH--------------------------NTLINMYSSCWCL--- 173
IK G SD S LH N++I+ Y C
Sbjct: 137 IIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETA 196
Query: 174 -----DQPD--------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
D P+ EA+ +F M+I +KP+ + L NVL+A A
Sbjct: 197 YELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHL 256
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
L + +H + ++ L L D Y KC + A ++F K
Sbjct: 257 GALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQDALEVFKK 303
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 51/261 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC--------------ADYHV---RLVFSQISNPT 89
L C+++R L Q+HA +++ L P A H+ R VF +I P
Sbjct: 26 LPHCTSLRALAQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPG 85
Query: 90 -IYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQL 144
+ N+++RGY + + EA M+ +G+ PD + F SL K+CA +Q
Sbjct: 86 DVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQA 145
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCW----------------CL-------------DQ 175
H A+K G A ++ TLINMY+ C C+ +
Sbjct: 146 HGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSR 205
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P EA+ +F M+ + +KP +VT+ +VL+A A L + +H+ V ++G S V++ T
Sbjct: 206 PGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTA 265
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + A D+F M
Sbjct: 266 LIDMYGKCGSLEDAIDVFQGM 286
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 47/248 (18%)
Query: 55 ELKQIHAQMLRTSLF------------FDPC--ADYHVRLVFSQISNPTIYTCNSIVRGY 100
E K++HA +L +F + C A Y L F ++S P +++ N+++R Y
Sbjct: 29 ETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHL-FDKLSQPCLFSWNAMMRMY 87
Query: 101 TNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASD 156
+A + EM+ G +PD+F +P + K+C D I V +H Q KFG SD
Sbjct: 88 VQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSD 147
Query: 157 SFLHNTLINMYSSC--------------------WCL--------DQPDEAIKIFYRMEI 188
+F+ NTL+ MY + W + ++A+ ++ RM
Sbjct: 148 TFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMD 207
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
V+P+ T+V+VL A +++ + VH V E GFW ++ ++ L+D Y KC +
Sbjct: 208 VGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKE 267
Query: 249 AWDLFVKM 256
AW L M
Sbjct: 268 AWLLAKGM 275
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-I 138
L+ + + + T +++ GY A + M +G+ P+ SL +C +
Sbjct: 270 LLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLV 329
Query: 139 YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
Y+ K LH+ AI+ + S+ + LINMY+ C C +
Sbjct: 330 YLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLS 389
Query: 176 -------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
EAI++F +M +++V+P+ T ++L A A DL+ +H + SGF
Sbjct: 390 GFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLY 449
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
+E+ + L+D Y KC + A +F
Sbjct: 450 RLEVASILVDIYSKCGSLGYAHQIF 474
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 35/230 (15%)
Query: 67 SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
+++ + +LVF + T+ + N+++ GY N +A Y M+ G+ PD
Sbjct: 156 AMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCA 215
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC------WCL---- 173
S+ +C ++ + +++H+ + G + + N L++MY C W L
Sbjct: 216 TVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGM 275
Query: 174 DQPD------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D D A+ + M+ E VKPN+V++ ++L+A L K
Sbjct: 276 DDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGK 335
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+H S V ++T L++ Y KC + ++ +F+ K PWN
Sbjct: 336 CLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWN 385
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CAD 137
VF S N+++ G+ L EA + +M+V+ + PD F SL + AD
Sbjct: 372 VFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILAD 431
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------- 178
+ +H I+ G + + L+++YS C L +
Sbjct: 432 LQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAII 491
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGF 226
A+K+F +M VKPN VT +VL A + A + + + +
Sbjct: 492 AAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQI 551
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
SHV+ T ++D + ++ A++L M
Sbjct: 552 ISHVDHYTCMIDLLGRAGRLNDAYNLIRTM 581
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 132/321 (41%), Gaps = 63/321 (19%)
Query: 3 APLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHF---CLVS--------LEKCS 51
A L L +Q+ P+ +S ++P + + + I S H CL L+ C
Sbjct: 28 ASLSLQYQSPNPSFTS-SAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCI 86
Query: 52 TMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNS 95
+ +K Q+HAQ+ FD + RL+F +I I+ N
Sbjct: 87 ARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNV 146
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
++RGY + A Y++M GL+PD F FP + K+CA + +++H ++ G
Sbjct: 147 LIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTG 206
Query: 153 LASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFY 184
D F+ LI+MY+ C C+ PD + +
Sbjct: 207 WEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCS 266
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M + ++P TLV ++A A L + +H F SH ++KT L+D Y KC
Sbjct: 267 EMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCG 326
Query: 245 FVSRAWDLF----VKMLFPWN 261
V A +LF VK + WN
Sbjct: 327 SVRVARNLFERLGVKRVVSWN 347
>gi|302765755|ref|XP_002966298.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
gi|300165718|gb|EFJ32325.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
Length = 644
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 43/231 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VFSQI + + N ++ Y+ + +A + Y EM+++G+ PDR ++ CA D
Sbjct: 289 VFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASLKD 348
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ ++H Q G ASD L LI Y C LD
Sbjct: 349 LEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLDAALEIFEALPARDNVTWNTMIAS 408
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P+ A+ F RM+ E + P+ VTL+ VL + K VH CV ESGF
Sbjct: 409 LNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVL---GLCGSVGEAKLVHSCVRESGFEQD 465
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNNYGQWAMSATVGPQG 276
E+K TL+ AY +C +++A ++F K+ WN AM QG
Sbjct: 466 SEVKNTLITAYGRCGGLAQAVEIFEALPRKIESSWN-----AMMGAYAAQG 511
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ----LHSQAIKFGLASDSFLHNTLI 164
AF M ++G P + F ++ ++C D +Q LH + GL SD + +L+
Sbjct: 215 AFELLKRMDLEGDRPSKMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLV 274
Query: 165 NMYS--------------------SCW-CL-------DQPDEAIKIFYRMEIENVKPNAV 196
NMY+ S W CL + ++A+ ++ M +E VKP+ +
Sbjct: 275 NMYARWGDPQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRL 334
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
TL V+ A +DL R+H+ + SGF S + L T L+ Y +C + A ++F
Sbjct: 335 TLNTVIDVCASLKDLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLDAALEIF 391
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS--QAIK 150
++ Y + +EA L + + +++G+ P F +L +C A + K+LH +
Sbjct: 99 MISAYVRRGWINEALLLFKKSLLEGVRPSEGTFIALLHACSRPASLDQGKKLHRLLEEAG 158
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
F + L +LI MY C LD+ D A ++
Sbjct: 159 FQESIAPSLATSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFEL 218
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGFWSHVELKTTLMDAYC 241
RM++E +P+ +T + VL A + R V V H + E G S V + T+L++ Y
Sbjct: 219 LKRMDLEGDRPSKMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYA 278
Query: 242 KCKFVSRAWDLFVKM----LFPWN 261
+ +A ++F ++ + WN
Sbjct: 279 RWGDPQQAQEVFSQIEARDVSSWN 302
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 48/204 (23%)
Query: 47 LEKCSTMRELKQ---IHAQ----------MLRTSL--FFDPCADYHVRL-VFSQISNPTI 90
++ C+++++L+Q IH Q ML T+L F+ C L +F +
Sbjct: 340 IDVCASLKDLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLDAALEIFEALPARDN 399
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
T N+++ + + A F+ M +G+ P R ++ C + K +HS +
Sbjct: 400 VTWNTMIASLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGLCGSVGEAKLVHSCVRE 459
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKI 182
G DS + NTLI Y C L Q P A+++
Sbjct: 460 SGFEQDSEVKNTLITAYGRCGGLAQAVEIFEALPRKIESSWNAMMGAYAAQGKPRAALEL 519
Query: 183 FYRM-EIEN-VKPNAVTLVNVLTA 204
F+RM ++E ++P +TLV+VL+A
Sbjct: 520 FHRMVKLEQMIQP--ITLVSVLSA 541
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 51/264 (19%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNP 88
CL L+ C+T+ +L Q+H +++ +P Y + LVFS + +
Sbjct: 10 CLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFS-VEDA 68
Query: 89 TIYTC---NSIVRGYTNKNL-HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
+Y ++I+R Y + H A +Y+ M+ G+ P+++ FP + K+CA D+ +
Sbjct: 69 RVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLG 128
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WC-------- 172
K +H +KFG D F+ NT+++MY C W
Sbjct: 129 KAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYAR 188
Query: 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
L Q A+ +F +M+I V P+ VT+V+VL+A L K + +++ VEL
Sbjct: 189 LGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVEL 248
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+D + KC V +A LF M
Sbjct: 249 SNALVDMFAKCGDVDKALGLFRNM 272
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 139/330 (42%), Gaps = 82/330 (24%)
Query: 36 SQYQAH-FCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-----DYHVRL 80
S +AH L L+ CSTM ELKQ H+Q++R L D CA D + L
Sbjct: 15 SSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYAL 74
Query: 81 -VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DI 138
VF +I +P Y N+I RGY L Y M+ + + P++F +P L ++C D
Sbjct: 75 EVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDY 134
Query: 139 YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
+E KQ+H+ +KFG +D F N LI+MY + L+Q
Sbjct: 135 AIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLIT 194
Query: 177 --------DEAIKIFY-------------------------------RMEIENVKPNAVT 197
D+A ++F RM +ENV +
Sbjct: 195 GYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFV 254
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
++L+A L K +H +++SG +L TT++D YCKC + +A ++F ++
Sbjct: 255 AASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNEL- 313
Query: 258 FPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
P W + +G + G+ A ++
Sbjct: 314 -PQKGISSW--NCMIGGLAMHGKGEAAIEL 340
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 82/297 (27%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFD-------------PCADY-HVRLVFSQISNPTIYTC 93
+ C++M++L++IHAQ+++T L D P D + LVF+QI NP ++
Sbjct: 4 KNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVW 63
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVE---KQLHSQA 148
N+I+RG++ + H A + +M+ P R +PS+FK+ A + + QLH +
Sbjct: 64 NTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRV 123
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
IK GL +D F+ NT++NMY +C L + D++
Sbjct: 124 IKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSR 183
Query: 181 KIFYRMEIEN-------------------------------VKPNAVTLVNVLTARARAR 209
++F +M + N +KP+ T+V++L A A
Sbjct: 184 RLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLG 243
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
LR + +H + ++ F + + T ++D Y KC + +A +F K L WN+
Sbjct: 244 ALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNS 300
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + NS++ GY K EA + M +G+ P F SL +CA +
Sbjct: 183 RRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACL 242
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+Q +H +K A +S + +I+MYS C +D+
Sbjct: 243 GALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLI 302
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+EA+++F ++E N+KP+ V+ + VLTA
Sbjct: 303 LGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTA 339
>gi|255549932|ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544922|gb|EEF46437.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 55/280 (19%)
Query: 33 NINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY- 76
N Y A F L+ C T + L KQ+HA + L FD C
Sbjct: 84 NQTPSYYAAF----LQSCITQKALIPGKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLC 139
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RL+F +I ++ N ++RGY + + Y+++ GL+PD F FP + K+C+
Sbjct: 140 EARLLFDKIPKRNLFLWNVLIRGYAWYGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACS 199
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ + +H Q ++ G D F+ LI+MYS C C+D
Sbjct: 200 ALSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNS 259
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+PD+++ + M + V+P TLV V++A A L + +H
Sbjct: 260 MLAAYSQNGKPDKSLALCSEMVLAGVRPTEATLVTVISASADIAALPQGRELHGFAWRRR 319
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
F S+ ++KTTL+D Y KC + A +LF ++ + WN
Sbjct: 320 FESNDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSWN 359
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 127/296 (42%), Gaps = 82/296 (27%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHV--------------RLVFSQISNPTIYTCN 94
+CSTMRELKQIHA +++T L D A V LVF++I++ + N
Sbjct: 34 RCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWN 93
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
+I+RG++ + A + +M+ + P R +PS+FK+ A + + + QLH + I
Sbjct: 94 TIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVI 153
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIK 181
K GL DSF+ NT+++MY +C CL + D+A K
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQK 213
Query: 182 IF-------------------------------YRMEIENVKPNAVTLVNVLTARARARD 210
+F M+ +VKP+ T+V++L A A
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGA 273
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ +HK + + F + + T L+D YCKC +F K L WN+
Sbjct: 274 SEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNS 329
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 76/290 (26%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTI 90
+ +L C + ELK+IHA +++ SL D C + + ++F Q+ NP +
Sbjct: 11 VTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNV 70
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCADIYVEK---QLHS 146
++ N+I+R YT+ + H A +++M+ + PD+F FP + KSCA + + Q+H+
Sbjct: 71 FSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHA 130
Query: 147 QAIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDE 178
KFG + + N LI+MY+ C W L Q
Sbjct: 131 HVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKS 190
Query: 179 AIKIFYRM-------------------------------EIENVKPNAVTLVNVLTARAR 207
A ++F M ++ ++P+ +++++VL A A+
Sbjct: 191 AREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQ 250
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
L K +HK ++SGF + + L++ Y KC + AW LF +M+
Sbjct: 251 LGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMI 300
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 35/161 (21%)
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME 187
F + ++C I K++H+ +K L+ +FL ++++ C L D A IF ++E
Sbjct: 10 FVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDL---CDNLSHVDYATMIFQQLE 66
Query: 188 IENV---------------KPNAVTLVN-VLTARARARD----------------LRTVK 215
NV P A+T+ N +LT ++ + D R +
Sbjct: 67 NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQ 126
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+VH V + G +H + L+D Y KC +S A+ ++ +M
Sbjct: 127 QVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEM 167
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
KQ+HA++ + + F+P C + L+F +IS ++ N ++RGY
Sbjct: 21 KQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWN 80
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ A Y++M GL+PD+F FP + K+C+ + K++H I+ GL SD F+
Sbjct: 81 GPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVG 140
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
LI+MY+ C C++ QPDE++ + M +K
Sbjct: 141 AALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLK 200
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P T V + A A L K +H GF S+ ++KT LMD Y K V+ A L
Sbjct: 201 PTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSL 260
Query: 253 F----VKMLFPWN 261
F K + WN
Sbjct: 261 FELLEEKRVVSWN 273
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 128/305 (41%), Gaps = 83/305 (27%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLF-----------FDPCA-----DYHVRLVF 82
Q H L L KC ++R KQIHA +++T L F + Y + L F
Sbjct: 28 QEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISL-F 86
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---Y 139
+ I P ++ NS++RG + A +F+ MI G+ P+ + FP L KSCA + +
Sbjct: 87 NSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAH 146
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQP---------------- 176
KQ+H+ +K G SD F+H +LINMY+ DQ
Sbjct: 147 EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206
Query: 177 -----DEAIKIFYRMEIE-------------------------------NVKPNAVTLVN 200
D A ++F M ++ NV PN T+V+
Sbjct: 207 LWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML--- 257
VL+A A++ L + +++ G S+++L L+D Y KC + A +LF ML
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERD 326
Query: 258 -FPWN 261
WN
Sbjct: 327 VISWN 331
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + + N+++ GY EA L + +M + P+ S+ +CA
Sbjct: 214 ARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQ 273
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + + S GL S+ L N LI+MYS C L
Sbjct: 274 SNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVM 333
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+ +F M V+P +T +++L + A + K +H ++++
Sbjct: 334 IGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFN 393
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
L T+L+D Y KC + A +F +K L WN
Sbjct: 394 SVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 32/167 (19%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D R +F + + + N ++ GYT+ + EA + EM+ G+ P F
Sbjct: 306 YSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITF 365
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------ 173
S+ SCA I + K +H+ K + + L +LI++Y+ C +
Sbjct: 366 LSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI 425
Query: 174 ----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q D+A ++F +M + ++PN +T V +L+A
Sbjct: 426 KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSA 472
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 36/195 (18%)
Query: 131 LFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------- 174
L C I KQ+H+ IK GL + F + LI + D
Sbjct: 35 LLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNL 94
Query: 175 --------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
P A+ F RM V+PN+ T +L + A+ K++H
Sbjct: 95 FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY-GQWAMSATVGPQGLVG 279
V + GF S V + T+L++ Y + ++ A +++F +N+ + +A + L G
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSGEMNNA-----QLVFDQSNFRDAISFTALIAGYALWG 209
Query: 280 RHSTAHQISGPCPKK 294
A Q+ P K
Sbjct: 210 YMDRARQLFDEMPVK 224
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 49/257 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLR----------TSLFFDPCA-DYHVRLVFSQ--ISNPTIY- 91
SL+ C T+ ELK H + + T L C L F++ N Y
Sbjct: 38 SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97
Query: 92 TC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
TC NS++RGY + L +EA L + M+ G+ PD++ FP +CA + Q+H
Sbjct: 98 TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PD 177
+K G A D F+ N+L++ Y+ C LD
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217
Query: 178 EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A+ +F+RM E V PN+VT+V V++A A+ DL T ++V+ + SG + + + L
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSAL 277
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y KC + A LF
Sbjct: 278 VDMYMKCNAIDVAKRLF 294
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRF 126
F+ C + R VF ++S + + S++ GY ++ +A LF+ + + + P+
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------ 177
+ +CA D+ +++++ G+ + + + L++MY C +D
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297
Query: 178 ----------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
EA+ +F M V+P+ +++++ +++ ++ R++ K
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
H V +GF S + L+D Y KC A+ +F +M + WN+
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 58/228 (25%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISN 87
L ++ CS +R + K H +LR + D +++ +F ++SN
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS- 146
T+ T NSIV GY A+ + M P EK + S
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETM------------P-----------EKNIVSW 437
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTAR 205
I GL S +EAI++F M+ E V + VT++++ +A
Sbjct: 438 NTIISGLVQGSLF-----------------EEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K ++ ++++G V L TTL+D + +C A +F
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIF 528
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLF-KSCA-----DIYVEKQLHSQAIKFGLASDSFLHN 161
E +F+ + QGL D L +SC + K++ + +G F++N
Sbjct: 47 ELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTC---FMYN 103
Query: 162 TLINMY-SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+LI Y SS C +EAI +F RM + P+ T L+A A++R ++H
Sbjct: 104 SLIRGYASSGLC----NEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + G+ + ++ +L+ Y +C + A +F +M
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 128/303 (42%), Gaps = 77/303 (25%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------ 75
+ ++S+ A L L++CS M EL+QIH QML+T L D CA
Sbjct: 9 TSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSL 68
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+ R VF +I P + N+++RGY+N EA L YH M+ + + + FP L K+C
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 136 ADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQPDE------- 178
+ + +Q+H+ IK G S+ + N+L+N+YS DQ D+
Sbjct: 129 SSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWN 188
Query: 179 --------------AIKIFYRMEIENV--------------KP-NAVTLVNVL-TARARA 208
A +IF M N+ KP A+ L + + TA +
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248
Query: 209 RDLRTVKRVHKCVD----ESGFWSHVELKT-----------TLMDAYCKCKFVSRAWDLF 253
++ V + C D + G W H +K L+D Y KC + A ++F
Sbjct: 249 DNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVF 308
Query: 254 VKM 256
KM
Sbjct: 309 RKM 311
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 125/280 (44%), Gaps = 50/280 (17%)
Query: 53 MRELKQIHAQMLR------TSLFFDPCA-------DYHVRLVFSQISNPTIYTCNSIVRG 99
M E KQ+HAQ+L+ S CA DY +F QI P + N+++RG
Sbjct: 1 MEEFKQVHAQVLKWENSFCASNLVATCALSDWGSMDYACS-IFRQIDQPGTFEFNTMIRG 59
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEK--QLHSQAIKFGLASD 156
Y N A Y+EM+ +G+ D F +P+LFK+CA + +E+ Q+H K GL D
Sbjct: 60 YVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGD 119
Query: 157 SFLHNTLINMYSSCW-----C-----LDQPD------------------EAIKIFYRMEI 188
F+ N+LINMY C C +D+ D E + +F M
Sbjct: 120 LFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSR 179
Query: 189 EN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
E +P LV+VL+A L + H + + +V ++T+L+D Y KC +
Sbjct: 180 EGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIE 239
Query: 248 RAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+ LF +M+ Q + S + + GR A Q+
Sbjct: 240 KGLSLFQRMV----KKNQLSYSVMITGLAMHGRGMEALQV 275
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 51/274 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL----------FFDPCADY----- 76
NN + Q CL L++C + E KQ+HA+ ++ SL CA
Sbjct: 24 NNFGGKEQE--CLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENS 81
Query: 77 --HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ +F I +P + N+++RGY N EA FY+EM+ +G PD F +P L K+
Sbjct: 82 MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141
Query: 135 CA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
C I KQ+H Q K GL +D F+ N+LINMY C ++
Sbjct: 142 CTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASW 201
Query: 177 -------------DEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
E + +F M E N+K +V+ L A A L +H +
Sbjct: 202 SSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLL 261
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++ ++T+L+D Y KC + +A +F KM
Sbjct: 262 RNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM 295
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 49/257 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLR----------TSLFFDPCA-DYHVRLVFSQ--ISNPTIY- 91
SL+ C T+ ELK H + + T L C L F++ N Y
Sbjct: 38 SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97
Query: 92 TC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
TC NS++RGY + L +EA L + M+ G+ PD++ FP +CA + Q+H
Sbjct: 98 TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PD 177
+K G A D F+ N+L++ Y+ C LD
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217
Query: 178 EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A+ +F+RM E V PN+VT+V V++A A+ DL T ++V+ + SG + + + L
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSAL 277
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y KC + A LF
Sbjct: 278 VDMYMKCNAIDVAKRLF 294
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRF 126
F+ C + R VF ++S + + S++ GY ++ +A LF+ + + + P+
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------ 177
+ +CA D+ +++++ G+ + + + L++MY C +D
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297
Query: 178 ----------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
EA+ +F M V+P+ +++++ +++ ++ R++ K
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
H V +GF S + L+D Y KC A+ +F +M + WN+
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 58/228 (25%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISN 87
L ++ CS +R + K H +LR + D +++ +F ++SN
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS- 146
T+ T NSIV GY A+ + M EK + S
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETM-----------------------PEKNIVSW 437
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTAR 205
I GL S +EAI++F M+ E V + VT++++ +A
Sbjct: 438 NTIISGLVQGSLF-----------------EEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K ++ ++++G V L TTL+D + +C A +F
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIF 528
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLF-KSCA-----DIYVEKQLHSQAIKFGLASDSFLHN 161
E +F+ + QGL D L +SC + K++ + +G F++N
Sbjct: 47 ELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTC---FMYN 103
Query: 162 TLINMY-SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+LI Y SS C +EAI +F RM + P+ T L+A A++R ++H
Sbjct: 104 SLIRGYASSGLC----NEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + G+ + ++ +L+ Y +C + A +F +M
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 125/304 (41%), Gaps = 81/304 (26%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCADY------HVRLVFS 83
Q H L L C + + LKQIH+Q+++T L + CA + L+F
Sbjct: 31 QNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFE 90
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-- 141
I P + N+++RG + + A FY M++ G+ P+ + FP L KSCA +
Sbjct: 91 SIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE 150
Query: 142 -KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
KQ+H +K GL SD F+H +LINMY+ L
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210
Query: 177 ----DEAIKIFYRMEIEN-------------------------------VKPNAVTLVNV 201
D+A ++F + + + V PN T+V V
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKML 257
L+A A++ L V +++ G S++ L L+D Y KC + +A DLF K +
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDI 330
Query: 258 FPWN 261
WN
Sbjct: 331 ISWN 334
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 115/304 (37%), Gaps = 80/304 (26%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY-------------HVRLVFSQ 84
Y F L S K +E KQIH +L+ L DP + LVFS+
Sbjct: 133 YTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSK 192
Query: 85 ------------ISNPTIYTC-------------------NSIVRGYTNKNLHHEAFLFY 113
I+ T+ C N+++ GY EA F+
Sbjct: 193 SSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFF 252
Query: 114 HEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
EM + P+ ++ +CA + + + S GL S+ L N LI+MYS C
Sbjct: 253 QEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC 312
Query: 171 WCLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLVNVL 202
LD+ EA+ +F +M+ NV+PN VT V++L
Sbjct: 313 GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSIL 372
Query: 203 TARARARDLRTVKRVHKCVDESGFW-SHVELKTTLMDAYCKCKFVSRAWDLFVKM----L 257
A A L K +H +D+ ++ L T+L+D Y KC + A +F M L
Sbjct: 373 PACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432
Query: 258 FPWN 261
WN
Sbjct: 433 GSWN 436
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 39/248 (15%)
Query: 21 SPLINLDNI--NNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------ 72
S L++L N ++ +N+++ L L++C +M E KQ+HA +L+ LF+D
Sbjct: 10 SHLLSLPNSPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNL 69
Query: 73 ---CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
CA +Y +FSQI P + N+++RG N EA L Y EM+ +G+
Sbjct: 70 VASCALSRWGSMEYACS-IFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIE 128
Query: 123 PDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA 179
PD F +P + K+C+ + K Q+H+ K GL D F+ N LI+MY C ++ A
Sbjct: 129 PDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEH---A 185
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV----DESGFWSHVELKTT 235
+F +M+ ++V + +++ A A +V+ H+C+ D SG H ++
Sbjct: 186 GVVFEQMDEKSV----ASWSSIIGAHA------SVEMWHECLMLLGDMSGEGRHRAEESI 235
Query: 236 LMDAYCKC 243
L+ A C
Sbjct: 236 LVSALSAC 243
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 51/263 (19%)
Query: 43 CLVSLEKCSTMR-ELKQIHAQMLRTSL-----------------FFDPCADYHVRLVFSQ 84
C+ L C++ + + +QIHA +R + F P + H +FSQ
Sbjct: 42 CIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQ--IFSQ 99
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
I NP I+T N+++RGY A Y +M V + PD +P L K+ A D+
Sbjct: 100 IQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREG 159
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------------WCLD 174
+++HS AI+ G S F+ NTL++MY++C + L+
Sbjct: 160 EKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALN 219
Query: 175 -QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
+P+EA+ +F M + V+P+ T+V++L+A A L +R H + + G ++
Sbjct: 220 GRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAG 279
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + +A +F +M
Sbjct: 280 NALLDLYAKCGSIRQAHKVFDEM 302
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 128/303 (42%), Gaps = 77/303 (25%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------ 75
+ ++S+ A L L++CS M EL+QIH QML+T L D CA
Sbjct: 9 TSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSL 68
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+ R VF +I P + N+++RGY+N EA L YH M+ + + + FP L K+C
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 136 ADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQPDE------- 178
+ + +Q+H+ IK G S+ + N+L+N+YS DQ D+
Sbjct: 129 SSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWN 188
Query: 179 --------------AIKIFYRMEIENV--------------KP-NAVTLVNVL-TARARA 208
A +IF M N+ KP A+ L + + TA +
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248
Query: 209 RDLRTVKRVHKCVD----ESGFWSHVELKT-----------TLMDAYCKCKFVSRAWDLF 253
++ V + C D + G W H +K L+D Y KC + A ++F
Sbjct: 249 DNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVF 308
Query: 254 VKM 256
KM
Sbjct: 309 RKM 311
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 122/296 (41%), Gaps = 82/296 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC--------------ADYHVRLVFSQISNPTIYT 92
L+ C+ ++LKQIHA+++R L D DY LVF Q+++P I+T
Sbjct: 27 LQNCNNFKQLKQIHARIIRFRLTHDQLLIRKLCQISSSYGKIDY-ASLVFDQLNDPDIFT 85
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAI 149
N ++R Y L ++ + +MI G +PD+F +P + +C I + H AI
Sbjct: 86 WNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAI 145
Query: 150 KFGLASDSFLHNTLINMY--------------------------------SSCWCLDQPD 177
K G SD ++ N ++N+Y +C LD
Sbjct: 146 KMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLDTAR 205
Query: 178 EAIK----------------------------IFYRMEIENVKPNAVTLVNVLTARARAR 209
E + +F RM I+NV+PN TLV+++ A
Sbjct: 206 EVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLG 265
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
L+ +R+H ++GF L T L+D Y KC + A +F V+ L WN
Sbjct: 266 SLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNLATWN 321
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 55/278 (19%)
Query: 47 LEKCSTMRELKQIHAQMLR-----TSLFFDPCA-------------DYHVRLVFSQISNP 88
+ KC +MR L+QIHA++L +S+ F C DY R +FSQI P
Sbjct: 64 IRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDY-ARKLFSQIQRP 122
Query: 89 TIYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYV---EKQ 143
I++ NS++RG + ++ E + + +M+ +G P+ F + K+C+ + +Q
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQ 175
+H+ +K G S F+ L+N Y+ C W +
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+ +F M+ V P+ VT+V+V++A A + L T K VH +++ + +EL T
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 302
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273
L++ Y KC + RA ++F M P + W+ S VG
Sbjct: 303 LVNMYAKCGCIERAKEVFDAM--PVKDTKAWS-SMIVG 337
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 44/259 (16%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
F L + S + E +Q+HA +L++ F+ C D + VF +I++
Sbjct: 166 FVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDR 225
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ ++++ GY L +EA + +M G++PD S+ +CA + K +H
Sbjct: 226 NLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVH 285
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE--------------------------- 178
+ K + +D L L+NMY+ C C+++ E
Sbjct: 286 AYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAE 345
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A++ F+RME VKPN VT + VL+A A + + +R + E G +EL ++
Sbjct: 346 DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMV 405
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D C+ V A L M
Sbjct: 406 DLLCRASLVEDACTLVETM 424
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 51/274 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL----------FFDPCADY----- 76
NN + Q CL L++C + E KQ+HA+ ++ SL CA
Sbjct: 24 NNFGGKEQE--CLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENS 81
Query: 77 --HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ +F I +P + N+++RGY N EA FY+EM+ +G PD F +P L K+
Sbjct: 82 MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141
Query: 135 CA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
C I KQ+H Q K GL +D F+ N+LINMY C ++
Sbjct: 142 CTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASW 201
Query: 177 -------------DEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
E + +F M E N+K +V+ L A A L +H +
Sbjct: 202 SSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLL 261
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++ ++T+L+D Y KC + +A +F KM
Sbjct: 262 RNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM 295
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 138/300 (46%), Gaps = 62/300 (20%)
Query: 43 CLVSLEKCSTMR-ELKQIHAQMLRTSLF-FDPCADYHVRL--------------VFSQIS 86
C+ L+ C++ + +L+QIHA +R + +P H+ +F+ I
Sbjct: 42 CIALLQICASSKYKLQQIHAFSIRHGVLPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQ 101
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
NP I+T N+++RG+ A YH + + PD +P L K+ + ++ V ++
Sbjct: 102 NPNIFTWNTMIRGHAESENPKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNVRVGEK 161
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+HS +I+ G S F+ N+L++MY++C + +
Sbjct: 162 IHSISIRNGFESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNGK 221
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P+EA+K++ M +E V+P+ TLV++L+A A L +R+H + + G ++ +
Sbjct: 222 PNEALKLYMEMGLEGVEPDGFTLVSLLSACAELGALALGRRIHAYMVKVGLDENLHANNS 281
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPW---------NNYGQWAMS--ATVGPQGLVGR 280
L+D Y KC + A +F +M + W N +G A+ + QGLV R
Sbjct: 282 LIDLYAKCGRIRDAQQVFDEMELRNVVSWTSLIVGLAVNGFGMEAIEHFKEMEKQGLVPR 341
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 123/304 (40%), Gaps = 81/304 (26%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSL--------------FFDPCADY-HVRLVFS 83
Q H L L C ++ LKQIH+Q+++T L P D + L+F
Sbjct: 23 QTHPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFK 82
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YV 140
I P N+I+RG + A +Y +MI G P+ + +P + KSCA I +
Sbjct: 83 SIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHE 142
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
KQ+H Q +K G +D+F+H +LI MY L
Sbjct: 143 GKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYAS 202
Query: 177 ----DEAIKIFYRMEIE-------------------------------NVKPNAVTLVNV 201
D+A+++F + + NV PN TL++V
Sbjct: 203 RGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSV 262
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KML 257
L+A A++ L+ V ++E G S++++ L+D Y KC + A LF K +
Sbjct: 263 LSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNV 322
Query: 258 FPWN 261
WN
Sbjct: 323 ISWN 326
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 131/333 (39%), Gaps = 88/333 (26%)
Query: 15 ALSSDNSPLINL----DNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFF 70
LS SP++ + D I++ + Y F L S + S+ E KQIH Q+L+ L F
Sbjct: 98 GLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILK--LGF 155
Query: 71 DPCADYHVRLV----------------------------------------------FSQ 84
D A H L+ F +
Sbjct: 156 DNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRGFLDQALELFDE 215
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
I + + N+++ GYT EA +F+ EM+ + P+ S+ +CA + +
Sbjct: 216 IPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMG 275
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+ S + GL S+ + N LI+MY+ C L+
Sbjct: 276 NWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHL 335
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVEL 232
EA+ +F +M NV+PN VTL+++L A A L K +H +D++ ++ L
Sbjct: 336 SCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNAL 395
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
T+L+D Y KC + A +F M L WN
Sbjct: 396 WTSLIDMYAKCGNIEVANQIFDGMNPKSLASWN 428
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 46/259 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHVRL---VFSQISNP 88
+ ++++C+ + +LK I A M+R +L D HV +FS +P
Sbjct: 11 VAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHP 70
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
++ N+I+RGY+ + A Y +M + G+ P+ + F + K+C + ++LH
Sbjct: 71 NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------ 177
SQ +K GL ++ L N LI +Y++C C+D +PD
Sbjct: 131 SQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAV 190
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+K+F M+ ENV +A TL +V+ L K VH +D+ G V L T L+
Sbjct: 191 EALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALV 250
Query: 238 DAYCKCKFVSRAWDLFVKM 256
Y KC + A +F M
Sbjct: 251 GMYSKCGSLDNALKVFQGM 269
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 122/276 (44%), Gaps = 50/276 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADY-HVRLVFSQISN 87
CL L C +M +L+QI AQ+ + L+ D P + H R +
Sbjct: 19 CLSLLNSCRSMDQLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPSKNLRHARSFVHHAAT 78
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
P+ + N ++RGY + EAF + +M +G +P++ FP L KSCA ++ KQ+
Sbjct: 79 PSPISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASALFEGKQV 138
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ--P 176
H+ A+K GL SD ++ N LIN Y C W C++
Sbjct: 139 HADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVMTACVESLWL 198
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+ I F+RM +P+ ++V +L+A A L + VH + G V+L T L
Sbjct: 199 GDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLSVQLGTAL 258
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATV 272
+D Y K + A D+F +M N W SA +
Sbjct: 259 VDMYGKSGALGYARDVFERM----ENRNVWTWSAMI 290
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 23/210 (10%)
Query: 2 AAPLPLHHQTRTPALSSDNSPL----INLDNINNNNINSQYQAHFCLVSLEKCSTMRELK 57
A P P+ ++ +SPL + + ++ F L S S + E K
Sbjct: 77 ATPSPISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASALFEGK 136
Query: 58 QIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
Q+HA ++ L F+ C R VF ++ T+ + NS++
Sbjct: 137 QVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVMTACVESL 196
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHN 161
+ ++ M G PD L +CA+ + + + +HSQ + G+ L
Sbjct: 197 WLGDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLSVQLGT 256
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
L++MY L A +F RME NV
Sbjct: 257 ALVDMYGKSGALGY---ARDVFERMENRNV 283
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 122/254 (48%), Gaps = 44/254 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL-------------FFDPCADYHVRLVFSQISNPTIYTC 93
L+ +++++LK +HA +LR FD + RL+F+QI P +
Sbjct: 23 LQSFNSLKQLKHVHAALLRLGFDQGSYLWSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLY 82
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N+++RG + + E+ FY+ M +G +P+ F FP + K+CA D + +H+ +K
Sbjct: 83 NTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVK 142
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQ--------PD--------------------EAIKI 182
G + F++ +L+++Y+ C +D P+ EAI +
Sbjct: 143 LGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDL 202
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F RM ++P++ T+V VL+A + DL + + + + E+ +V + T+L+D Y K
Sbjct: 203 FRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAK 262
Query: 243 CKFVSRAWDLFVKM 256
+ +A LF M
Sbjct: 263 HGNMEKARCLFDGM 276
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVE 141
I I + +I+ GY + EA + M+ GL PD F + +C D+
Sbjct: 175 IPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANG 234
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------------- 175
+ + + +A + F+ +L+++Y+ +++
Sbjct: 235 EWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASN 294
Query: 176 --PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
P +A+ +F++M +KP+ +V L A AR L +D + F+++ L
Sbjct: 295 GLPKDALDLFFKMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLG 354
Query: 234 TTLMDAYCKCKFVSRAWDLF 253
T L+D Y KC +++AW++F
Sbjct: 355 TALIDMYAKCGSMAKAWEVF 374
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 51/274 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL----------FFDPCADY----- 76
NN + Q CL L++C+ + E KQ+HA+ ++ SL CA
Sbjct: 25 NNCGGKEQE--CLYLLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENS 82
Query: 77 --HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ +F I +P + +++RGY N+ A FY+EM+ +G+ PD F +P L K+
Sbjct: 83 MNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKA 142
Query: 135 CAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMY------------------------ 167
C I KQ+H K GL +D F+ N+LINMY
Sbjct: 143 CTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASW 202
Query: 168 ----SSCWCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
S+C + E + +F M E N+K +V+ L+A A L +H +
Sbjct: 203 SSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLL 262
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++ +KT+L+D Y KC + A +F KM
Sbjct: 263 RNISELNIIVKTSLVDMYVKCGCIDNALHIFQKM 296
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 54/260 (20%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CADY------HVRLVFSQISNPTIY 91
++ C +M +LKQIH+Q + T L +P C + + R+VF + P +
Sbjct: 26 IKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHF 85
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVE--KQLHSQA 148
N++++GY+ + A Y EM+ +G++PD + +P L K D V+ ++LH
Sbjct: 86 VWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHI 145
Query: 149 IKFGLASDSFLHNTLINMYS--------------------SCWCL--------DQPDEAI 180
+K G +S+ F+ N LI++YS W + Q DE++
Sbjct: 146 VKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESM 205
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC----VDESGFWSHVELKTTL 236
K+F ME V P+++TLV+VL+A ++ +DL KRVH+ + E F S T +
Sbjct: 206 KLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFVSW----TAM 261
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
+D Y + LF +M
Sbjct: 262 IDGYLQVNRFKEVLSLFREM 281
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF + S + T N ++ GY E+ + EM ++P S+ +C+
Sbjct: 174 RGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKL 233
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
D+ V K++H D +I+ Y +++ E + +F M+ N+KP+
Sbjct: 234 KDLNVGKRVHRNYFDKMPERDFVSWTAMIDGYLQ---VNRFKEVLSLFREMQAANIKPDE 290
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
T+V++LTA A L + + +D++ + L+D Y C V +A +F
Sbjct: 291 FTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNA 350
Query: 256 M 256
M
Sbjct: 351 M 351
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 81/301 (26%)
Query: 43 CLVSLE-KCSTMRELKQIHAQMLRTSLFFDPCADYHV--------------RLVFSQISN 87
CL L+ +C+ M++L++IHA +++T L A V L+F+ I +
Sbjct: 27 CLTMLQTQCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPS 86
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQL 144
P +Y N+I+RG++ + H A + +M+ ++P R +PS+FK+ A + Y QL
Sbjct: 87 PNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQL 146
Query: 145 HSQAIKFGLASDSFLH-------------------------------NTLINMYSSCWCL 173
H + +K GL D F+ N++I + C +
Sbjct: 147 HGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEV 206
Query: 174 DQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNVLTAR 205
D+ EA+++F +M+ E V+P+ T+V++L+A
Sbjct: 207 DKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSAC 266
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
A L+ + VH V F +V + T ++D YCKC + +A ++F + L WN
Sbjct: 267 AHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWN 326
Query: 262 N 262
+
Sbjct: 327 S 327
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 37/169 (21%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F + T T NS++ GY EA + +M + + P F SL +CA +
Sbjct: 210 RRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHL 269
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------- 178
K +H + + + +I+MY C + + E
Sbjct: 270 GALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSII 329
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLT------ARARARD 210
AI+ F ++E ++KP+ V+ + VLT A +ARD
Sbjct: 330 IGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARD 378
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 46/256 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------CAD-----YHVRLVFSQISNPTIY 91
LEKC +M +LKQIH+ ++ L DP CA + R VF I PT++
Sbjct: 14 LEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLF 73
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQA 148
N++++GY+ N Y M+ + PDRF FP L K + K L + A
Sbjct: 74 IWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHA 133
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAI 180
+K G S+ F+ I+M+S C +D Q ++
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSK 193
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F ME V PN+VTLV +L+A ++ +DL K ++K ++ ++ L+ L+D +
Sbjct: 194 MLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMF 253
Query: 241 CKCKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 254 AACGEMDEAQSVFDNM 269
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 39/161 (24%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F QI + +++ GY N EA + EM + + PD F S+ +CA +
Sbjct: 294 RKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHL 353
Query: 139 -------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
+V+ + +IK +D+F+ N LI+MY C + +
Sbjct: 354 GALELGEWVKTYIDKNSIK----NDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTW 409
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+EA+ +F M ++ P+ +T + VL A
Sbjct: 410 TAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCA 450
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F M++ NVKP+ T+V++LTA A L + V +D++ + + L+
Sbjct: 323 EALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALI 382
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPW---------NNYGQWAMS 269
D Y KC V +A +F +M F W N +G+ A++
Sbjct: 383 DMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALA 427
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF + T N ++ GY ++ + + EM +G+ P+ + +C+
Sbjct: 162 RKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKL 221
Query: 137 -DIYVEKQLHSQAIKFGLASDSF-LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194
D+ K ++ + I G+ + L N LI+M+++C + DEA +F M+ +V
Sbjct: 222 KDLEGGKHIY-KYINGGIVERNLILENVLIDMFAAC---GEMDEAQSVFDNMKNRDV--- 274
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
++ +++T A + ++ + E + S T ++D Y + A LF
Sbjct: 275 -ISWTSIVTGFANIGQIDLARKYFDQIPERDYVSW----TAMIDGYLRMNRFIEALALFR 329
Query: 255 KM 256
+M
Sbjct: 330 EM 331
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 77 HVRLVFSQISNPT----IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
+ S S+PT ++ N+I+ G+ E F FY +M +G++PD+F FP
Sbjct: 7 QMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAI 66
Query: 133 KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------ 174
K+C D+ K++H KFGL D F+ + L+N Y ++
Sbjct: 67 KACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWN 126
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
Q + ++ F RM E+V P+ T+ +L+ A DL + +H +
Sbjct: 127 AMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKM 186
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
G+ S V + +L+D Y KCK + A ++F M +F WN+
Sbjct: 187 GYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 228
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTIYT 92
+++ C + E+K+IH + + L D H ++ F ++ +
Sbjct: 65 AIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVL 124
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP---SLFKSCADIYVEKQLHSQAI 149
N++V GY + M + ++P RF S+F D+ + +H A+
Sbjct: 125 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAM 184
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIK 181
K G S + N+LI+MY C C++ D ++
Sbjct: 185 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLR 244
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW------SHVELKTT 235
+ RM ++P+ VT+ VL A + L + +H + SG V LK
Sbjct: 245 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNA 304
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++D Y KC + A +F +M + WN
Sbjct: 305 VIDMYAKCGSMRDAHLVFERMXNKDVASWN 334
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 39/261 (14%)
Query: 56 LKQIHAQMLRTSLFFDPCADYHVR----LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL 111
L+ +H+ L F + C H+ L F+ I P ++ CNS++R +++ + H
Sbjct: 37 LQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLF 96
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
Y M + P+ + FP + KS AD + + +H+ +K G ASD ++ NTL+++Y+
Sbjct: 97 LYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYA 156
Query: 169 SC--------------------WCLD--------QPDEAIKIFYRMEIENVKPNAVTLVN 200
SC W + D+A+ +F +M+ V PN VT+VN
Sbjct: 157 SCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVN 216
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM---- 256
L A A + +H+ V + V L T L+D Y KC + A +F M
Sbjct: 217 ALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKN 276
Query: 257 LFPWNNYGQWAMSATVGPQGL 277
++ WN + SA G + +
Sbjct: 277 VYTWNVFINGLASAKCGEEAI 297
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 116/279 (41%), Gaps = 56/279 (20%)
Query: 37 QYQAHFCLVSL-EKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV----------- 81
Q H+ SL + C + L KQ+HAQ + ++ D +LV
Sbjct: 43 QPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQ--DLATKLVHLYAVSNSLLN 100
Query: 82 ----FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
F +I ++ N ++RGY H A + YH+M+ GL PD F P + K+C+
Sbjct: 101 ARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSA 160
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
I + +H IK G D F+ LI+MY+ C C+
Sbjct: 161 LSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSM 220
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
PDE+I + M V+P TLV V+++ A L + +H GF
Sbjct: 221 LAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGF 280
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S+ ++KT L+D Y KC V A LF ++ + WN
Sbjct: 281 QSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWN 319
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 39/261 (14%)
Query: 56 LKQIHAQMLRTSLFFDPCADYHVR----LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL 111
L+ +H+ L F + C H+ L F+ I P ++ CNS++R +++ + H
Sbjct: 37 LQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLF 96
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
Y M + P+ + FP + KS AD + + +H+ +K G ASD ++ NTL+++Y+
Sbjct: 97 LYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYA 156
Query: 169 SC--------------------WCLD--------QPDEAIKIFYRMEIENVKPNAVTLVN 200
SC W + D+A+ +F +M+ V PN VT+VN
Sbjct: 157 SCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVN 216
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM---- 256
L A A + +H+ V + V L T L+D Y KC + A +F M
Sbjct: 217 ALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKN 276
Query: 257 LFPWNNYGQWAMSATVGPQGL 277
++ WN + SA G + +
Sbjct: 277 VYTWNVFINGLASAKCGEEAI 297
>gi|302793011|ref|XP_002978271.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
gi|300154292|gb|EFJ20928.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
Length = 680
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 43/231 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VFSQI + + N ++ Y+ + +A + Y EM+++G+ PDR ++ CA D
Sbjct: 223 VFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASLKD 282
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ ++H Q G ASD L LI Y C L+
Sbjct: 283 LEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIAS 342
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P+ A+ F RM+ E + P+ VTL+ VL + K VH CV ESGF
Sbjct: 343 LNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVL---GLCGSVGEAKLVHSCVRESGFEQD 399
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNNYGQWAMSATVGPQG 276
E+K TL+ AY +C + +A ++F K+ WN AM QG
Sbjct: 400 SEVKNTLITAYGRCGGLPQALEIFEALPRKIESSWN-----AMMGAYAAQG 445
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ----LHSQAIKFGLASDSFLHNTLI 164
AF M ++G P + F ++ ++C D +Q LH + GL SD + +L+
Sbjct: 149 AFELLKRMDLEGDRPSKMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLV 208
Query: 165 NMYS--------------------SCW-CL-------DQPDEAIKIFYRMEIENVKPNAV 196
NMY+ S W CL + ++A+ ++ M +E VKP+ +
Sbjct: 209 NMYARWGDAQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRL 268
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
TL V+ A +DL R+H+ + SGF S + L T L+ Y +C + A ++F
Sbjct: 269 TLNTVIDVCASLKDLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLEAALEIF 325
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 53/258 (20%)
Query: 47 LEKCSTMRELKQ---IHAQ----------MLRTSL--FFDPCADYHVRL-VFSQISNPTI 90
++ C+++++L+Q IH Q ML T+L F+ C L +F +
Sbjct: 274 IDVCASLKDLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLEAALEIFEALPARDN 333
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
T N+++ + + A F+ M +G+ P R ++ C + K +HS +
Sbjct: 334 VTWNTMIASLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGLCGSVGEAKLVHSCVRE 393
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKI 182
G DS + NTLI Y C L Q P A+++
Sbjct: 394 SGFEQDSEVKNTLITAYGRCGGLPQALEIFEALPRKIESSWNAMMGAYAAQGKPRAALEL 453
Query: 183 FYRM-EIEN-VKPNAVTLVNVLTA-RARARDLRTVKRV-HKCVDESGFWSHVELKTTLMD 238
F+RM ++E ++P+ T++ L + R+ A + + V+E GF ++ ++D
Sbjct: 454 FHRMVKLEQMIQPSVSTIILALNSCRSLADGKLVISSIPESLVEEDGF-----VQAAMVD 508
Query: 239 AYCKCKFVSRAWDLFVKM 256
+C + A + F K+
Sbjct: 509 MLARCGSLDDASEFFHKL 526
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS--QAIK 150
++ Y + +EA L + + +++G+ P F +L +C A + K+LH +
Sbjct: 33 MISAYVRRGWINEALLLFKKSLLEGVRPSEGTFIALLHACSRPASLDQGKKLHRLLEEAG 92
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
F + L +LI MY C LD+ D A ++
Sbjct: 93 FQESIAPSLATSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFEL 152
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGFWSHVELKTTLMDAYC 241
RM++E +P+ +T + VL A + R V V H + E G S V + T+L++ Y
Sbjct: 153 LKRMDLEGDRPSKMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYA 212
Query: 242 KCKFVSRAWDLFVKM----LFPWN 261
+ +A ++F ++ + WN
Sbjct: 213 RWGDAQQAQEVFSQIEARDVSSWN 236
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 33/272 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------------CADYHVRLVFSQISNPTI 90
LE+C T+R+L +IHA +++T L P DY V +F QI P
Sbjct: 31 LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVS-IFRQIDEPDS 89
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
N ++RG+T K HEA L + EM + PD F FP + K C+ + +Q+H+
Sbjct: 90 PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+K G S F+ NTLI+MY++C + + A ++F M NV+ T ++ +
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANC---GEVEVARRVFDEMSERNVR----TWNSMFAGYTK 202
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC-KCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + V +++ V+E G + L T+L+D +C+ A DLF +M + +
Sbjct: 203 SGNWEEVVKLY--VEEKGLKGNPTLITSLVDIQASRCR---EALDLFHEMQKANIDPNEI 257
Query: 267 AMSATVGPQGLVGRHSTAHQISGPCPKKAHKL 298
M + + ++G T + KK KL
Sbjct: 258 TMVSILSSCAVLGALETGKWVHFFIKKKRMKL 289
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 38/239 (15%)
Query: 30 NNNNINSQYQAHF---CLVSLEKCSTMRELKQIHAQMLRTSLFFDP-CADYHVRL----- 80
NN +S+ A F L L++C +M E KQ+HA +L+ LF+D C V
Sbjct: 17 NNPPQSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSR 76
Query: 81 ---------VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
+F QI P + N+++RG N EA L Y EM+ +G+ PD F +P +
Sbjct: 77 WGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFV 136
Query: 132 FKSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188
K+C+ + K Q+H+ K GL D F+ N LINMY C ++ A +F +M+
Sbjct: 137 LKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEH---ASVVFEQMDE 193
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCV----DESGFWSHVELKTTLMDAYCKC 243
++V + +++ A A +V+ H+C+ D SG H ++ L+ A C
Sbjct: 194 KSV----ASWSSIIGAHA------SVEMWHECLMLLGDMSGEGRHRAEESILVSALSAC 242
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 46/268 (17%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADY-HVR 79
+Q + CL L+ CS+++ L QIH+Q+ + L D P D + +
Sbjct: 659 GAQVERTPCLSLLKLCSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQ 718
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+ +P N ++RGY + N +A Y M +G+ P+ FP L K+CA +
Sbjct: 719 SILDHSVHPVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACF 778
Query: 140 VEK---QLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W----- 171
K Q+H + IK+GL D +++N L+N Y SC W
Sbjct: 779 ATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAVIT 838
Query: 172 -CLD--QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C++ + EAI+ F +M +P+ T+V +L A +L + +H V E G
Sbjct: 839 SCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVL 898
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +L T L+D Y K V A +F +M
Sbjct: 899 NYQLGTALVDMYAKSGAVGYAKLVFDRM 926
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 34/166 (20%)
Query: 130 SLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC------------------- 170
SL K C+ I Q+HSQ GL D+FL LI S
Sbjct: 669 SLLKLCSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPV 728
Query: 171 ---WCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
W + + P +A+ ++ M E ++PN++T +L A A + K+VH
Sbjct: 729 PLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHV 788
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V + G V + L++ Y CK + A +F +M + WN
Sbjct: 789 EVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWN 834
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 122/261 (46%), Gaps = 51/261 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP---------CADY-------HVRLVFSQISN 87
L++C++ + + KQIHA + L P A Y H R +F ++ N
Sbjct: 25 LQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRN 84
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYVEKQ--- 143
P++++ N+++R YTN L ++A + +M+ G PD + +P + K+C D + +
Sbjct: 85 PSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGAL 144
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+H++ + G SD+F+ N+L+ MY +C ++
Sbjct: 145 IHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGC 204
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ +F M + ++P+ T+V+VL + ++L +RVH V+ + + +
Sbjct: 205 VKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNS 264
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + A +F +M
Sbjct: 265 LLDMYAKCGNMDEAQMIFYEM 285
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 49/285 (17%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L CS ++EL +++HA + +L + C + +++F ++ +
Sbjct: 231 LPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDV 290
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
+ +++ GY A L M + + P+ S+ +CA +Y K LH
Sbjct: 291 VSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGW 350
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ--PDEA 179
AI+ L S+ + LI+MY+ C W C+ +A
Sbjct: 351 AIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKA 410
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I++F +M +E V PN TL ++L A A DL+ + +H + SGF S +E+ T L+D
Sbjct: 411 IELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDI 470
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
Y KC + A ++F + P + SA + G+ G TA
Sbjct: 471 YSKCGSLESAHNIFNGI--PKKDKDIITWSAIIAGYGMHGHGETA 513
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 122/261 (46%), Gaps = 51/261 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP---------CADY-------HVRLVFSQISN 87
L++C++ + + KQIHA + L P A Y H R +F ++ N
Sbjct: 25 LQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRN 84
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYVEKQ--- 143
P++++ N+++R YTN L ++A + +M+ G PD + +P + K+C D + +
Sbjct: 85 PSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGAL 144
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+H++ + G SD+F+ N+L+ MY +C ++
Sbjct: 145 IHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGC 204
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ +F M + ++P+ T+V+VL + ++L +RVH V+ + + +
Sbjct: 205 VKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNS 264
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + A +F +M
Sbjct: 265 LLDMYAKCGNMDEAQMIFYEM 285
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 49/285 (17%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L CS ++EL +++HA + +L + C + +++F ++ +
Sbjct: 231 LPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDV 290
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
+ +++ GY A L M + + P+ S+ +CA +Y K LH
Sbjct: 291 VSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGW 350
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ--PDEA 179
AI+ L S+ + LI+MY+ C W C+ +A
Sbjct: 351 AIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKA 410
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I++F +M +E V PN TL ++L A A DL+ + +H + SGF S +E+ T L+D
Sbjct: 411 IELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDI 470
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
Y KC + A ++F + P + SA + G+ G TA
Sbjct: 471 YSKCGSLESAHNIFNGI--PKKDKDIITWSAIIAGYGMHGHGETA 513
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 113/265 (42%), Gaps = 37/265 (13%)
Query: 30 NNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY------HVRLVFS 83
+N N+N CL L CS+M+ L QI CA H R++ S
Sbjct: 18 SNGNLNLVSTKQQCLSLLNLCSSMKHLFQIRGHGFIAGPLLRFCASSPLGNLNHARVLLS 77
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--- 140
+ + N ++R Y ++ EA Y EM G+ PD+ FP L K+CA I
Sbjct: 78 GSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNE 137
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLD 174
+++ +K GL + ++ NT+I+ Y SC W C+D
Sbjct: 138 GRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVD 197
Query: 175 QP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+++ +F +M P+ T+V +L+A + +L + VH V E G + L
Sbjct: 198 NEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRL 257
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKML 257
T L+D Y KC V A +F +ML
Sbjct: 258 GTALVDMYAKCGAVCEASLVFHRML 282
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 120/254 (47%), Gaps = 47/254 (18%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP--------------CADY-HVRLVFSQISNPTIYTCN 94
C+++ + KQ HA +LRT L +P D + R +F+Q+ NP + CN
Sbjct: 21 CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKF 151
+++RGY +EA Y+ M+ +G+ D + +P + +CA + + ++ H + +K
Sbjct: 81 TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140
Query: 152 GLASDSFLHNTLINMYSSCWCL----DQPDE------------------------AIKIF 183
G SD F+ N LI Y +C D DE A +
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200
Query: 184 YRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
M +++N++P+ VT+V+++ A A+ +L K +H E G ++ + ++D YCK
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCK 260
Query: 243 CKFVSRAWDLFVKM 256
C + A ++F ++
Sbjct: 261 CDDIESAQEVFNRI 274
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 50/281 (17%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQ 84
Y F L + + ++ ++ H ++L+ F+ C + VF +
Sbjct: 112 YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDE 171
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA---DIYV 140
+ + T N ++ + NK L +AF EM + L PD SL +CA ++
Sbjct: 172 STVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLER 231
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------------- 178
K LHS + + GL + ++N +++MY C ++ E
Sbjct: 232 GKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAK 291
Query: 179 ------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
A+ +F +M++ ++ + +TLV VL+A A+ L K +H +D+ + L
Sbjct: 292 SGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVL 351
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY-GQWAM 268
+T L+D Y KC + A +F +M +F WN G AM
Sbjct: 352 ETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 392
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 46/247 (18%)
Query: 53 MRELKQIHAQMLRTSL--------------FFDPCADY-HVRLVFSQISNPTIYTCNSIV 97
MR LK +HAQ++ L D D + + +F QI P + NS++
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYVEKQL-HSQAIKFGLA 154
RGY+N + +A L + MI GL P+ F P + K+C Y E L H AIK G+
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 155 SDSFLHNTLINMYSSCWCL--------DQPD--------------------EAIKIFYRM 186
S F+ N LI +Y C + D D EA +F +M
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
++P+ T VN+L+ +++RDL + VH C++ +G + ++ L+D Y KC +
Sbjct: 181 REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNL 240
Query: 247 SRAWDLF 253
A +F
Sbjct: 241 HSAQAIF 247
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R +F Q+ + + NS++ Y + + EA +++M ++PD S+ +C
Sbjct: 275 RQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQL 334
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW--------CLDQPD---------- 177
D+ + K++H+ + A L+N+LI+MY+ C L+ P
Sbjct: 335 GDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVII 394
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F M+ + P+ +TL +L+A
Sbjct: 395 GALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSA 431
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 165 NMYSSCWCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
N SC+ + Q EA+ +F +M V P+ TLV++L A ++ DL K++H +
Sbjct: 290 NSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILS 349
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
+ V L +L+D Y KC V A D+F++M P N W + +G L G
Sbjct: 350 NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM--PGKNLVSW--NVIIGALALHG---- 401
Query: 284 AHQISGPCPKKAHKLF 299
C +A KLF
Sbjct: 402 -------CGLEAIKLF 410
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 111 LFYHEMIVQGLIPDRFMFPSLFKSCA-----DIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
L + ++I+ GL + L CA D+ +++ Q + + F++N+LI
Sbjct: 6 LLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQ----PNKFMYNSLIR 61
Query: 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
YS+ D P +A+ +F RM + PN TL VL A VH + G
Sbjct: 62 GYSNS---DDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 118
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
S V ++ L+ Y C + A LF K L WN+
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNS 159
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 48/264 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYH-------------VRLVFSQISNPTIYTC 93
L C + + QI AQ++ +L + +H L+F+ S P ++ C
Sbjct: 18 LTNCCSPCHIHQIQAQLIVQNLHSNTTIAHHFITACQSLGLLDSALLLFTHHSKPHVFIC 77
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEKQ-LHSQAIK 150
NS++R +++ + H F Y M ++P+ F FP L KS AD E Q +H+ +K
Sbjct: 78 NSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCIHTHVVK 137
Query: 151 FGLASDSFLHNTLINMYSSC--------------------WCL--------DQPDEAIKI 182
G D ++ N+L+N+Y+SC W + ++ D+A+
Sbjct: 138 LGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIA 197
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M+ V PN VT+VN L+A A L +H+ + SG+ V L T+L+D Y K
Sbjct: 198 FEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGK 257
Query: 243 CKFVSRAWDLFVKM----LFPWNN 262
C + +F M +F WN+
Sbjct: 258 CGRIEEGLVVFRSMKEKNVFTWNS 281
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 120/270 (44%), Gaps = 60/270 (22%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY----HVRLVFSQISN 87
L LE C ++ EL Q+H M+++S+ F C + + R VF I
Sbjct: 10 LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
P++Y NS++RGY+N +A +FY EM+ +G PD F FP + K+C+ DI +
Sbjct: 70 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC---------------WCL-------------DQP 176
H +K G + ++ L++MY C W + ++
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+AI+ F M+ VK N +V++L A R D +V GF +V L T+L
Sbjct: 190 SDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYFQSKV-------GF--NVILATSL 240
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+D Y KC + A LF M L WN+
Sbjct: 241 IDMYAKCGDLRTARYLFDGMPERTLVSWNS 270
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 63 MLRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
+L TSL + C D R +F + T+ + NSI+ GY+ EA + +M+
Sbjct: 235 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 294
Query: 120 GLIPDRFMF-----PSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS----- 169
G+ PD+ F S+ + C+ + + +H+ K G D+ + L+NMY+
Sbjct: 295 GIAPDKVTFLSVIRASMIQGCSQL--GQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAE 352
Query: 170 ---------------CWCL--------DQPDEAIKIFYRM-EIENVKPNAVTLVNVLTA 204
W + +EA+ IF RM E N P+ +T + VL A
Sbjct: 353 SAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYA 411
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 77/283 (27%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFD-------------PCADY-HVRLVFSQISNPTIYTC 93
+ C+TM++LK+IH+Q+++T L D P D + LVF QI NP I+
Sbjct: 30 KNCTTMKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAW 89
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA--DIYVE-KQLHSQAI 149
N+I+RG++ ++ + Y +M++ + P R +PS+FK+ A D+ E QLH + I
Sbjct: 90 NTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMI 149
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIK 181
K GL +DSF+ NT++ MY +C + DE+ +
Sbjct: 150 KLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRR 209
Query: 182 IFYRM-------------------------------EIENVKPNAVTLVNVLTARARARD 210
+F +M ++E ++P+ T+V++L A A
Sbjct: 210 LFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGA 269
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+R + +H + + F + + T ++D Y KC + +A +F
Sbjct: 270 IRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVF 312
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++S + NS++ GY +A + +M V+ + P F SL +CA +
Sbjct: 208 RRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACL 267
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+Q +H +K + + +I+MYS C +D
Sbjct: 268 GAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMI 327
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q +EA+++F ++ +++P+ V+ + VLTA
Sbjct: 328 LGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTA 364
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 38/239 (15%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSL 131
C D R +F+ I T+ + ++++ Y EA L +H M G + P+ F +
Sbjct: 35 CLD-EARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGV 93
Query: 132 FKSCA---DIYVEKQLHSQAIKFG--LASDSFLHNTLINMYSSCWCL----------DQP 176
F +C D+ +++H+ A+ G +S++ L N L+NMY C L D P
Sbjct: 94 FNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHP 153
Query: 177 D------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
D EA+++F+RM +E + P +VTL +VL A A + L+ K++H
Sbjct: 154 DAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIH 213
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
+D SGF S V +T L+D Y KC + + +F M N W AM A + G
Sbjct: 214 SRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAM--ETRNSVSWTAMIAALAQHG 270
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 31/213 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF ++ + + N++V G + HHEA + +M +G PD F S +F
Sbjct: 124 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAE 183
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
CAD+ ++H A++ G +D F+ ++LI+MY++C D
Sbjct: 184 CADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSV 243
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA+ IF RM V+P VT +++ LR K++H V GF
Sbjct: 244 LAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGF 303
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+V + ++L+D YCKC +S A +F +M P
Sbjct: 304 EDNVFISSSLIDMYCKCGEISIAHHIFDRMCSP 336
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 37/216 (17%)
Query: 75 DYHVRLVFSQ--ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
DY V+ VF + +P ++ NS++ G EA + M+ G+ P F SL
Sbjct: 223 DYSVK-VFDNLPVRDPILW--NSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLI 279
Query: 133 KSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD-- 177
C A + KQLH+ I+ G + F+ ++LI+MY C + PD
Sbjct: 280 PVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVV 339
Query: 178 ----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
EA+ +F RME+ N KPN +T + VLTA + A + + K +
Sbjct: 340 SWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSM 399
Query: 222 -DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
D G +E L D + + A++ KM
Sbjct: 400 SDHYGIVPTLEHCAALADILGRAGELDEAYNFISKM 435
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 137/315 (43%), Gaps = 66/315 (20%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLF-----FDPCADYHVRLVFSQISNP-----------TI 90
+++C+ +R KQIHAQ+LR++L A++ + V + I P +
Sbjct: 91 IQRCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHV-TDIRYPCNFLKQFDWSFSS 149
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ CN I+ GY N A Y ++ G +PD + P++ KSCA I KQ+H+
Sbjct: 150 FPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTL 209
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEA 179
A+K L D F+ N+ +++YS C W ++A
Sbjct: 210 AVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDA 269
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F RM+ V PNA T V++L A + L K +H V + + + TLMD
Sbjct: 270 VALFLRMD---VAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDM 326
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLF 299
Y KC+ V+ A LF ++ P + W T GLV CP+++ LF
Sbjct: 327 YVKCESVTDAKRLFDEI--PEKDIVSW----TSMISGLVQYQ---------CPQESLDLF 371
Query: 300 FFSMLKKVHVPGVLI 314
+ + GV++
Sbjct: 372 YEMLGSGFEPDGVIL 386
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 116/300 (38%), Gaps = 51/300 (17%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CAD- 75
+ N + Y L S + S + E+KQIH ++T L+ D C D
Sbjct: 176 VGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDT 235
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
VF + + + ++ GY L ++A + M V P+ F S+ +C
Sbjct: 236 VGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMDVA---PNAATFVSILGAC 292
Query: 136 ADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------- 175
+ + K +H K+ + + NTL++MY C +
Sbjct: 293 GKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWT 352
Query: 176 -----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
P E++ +FY M +P+ V L +VL+A A L + VH+ +D S
Sbjct: 353 SMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHS 412
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
V + T+L+D Y KC + A +F L P N W +A +G + G A
Sbjct: 413 RIKWDVHIGTSLIDMYAKCGCIEMAQQMF--NLLPSKNIRTW--NAYIGGLAINGHGQEA 468
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 65/251 (25%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
DY V L F + NP+++ +I+ G+ + LH +A FY +M+ QG+ P+ F F S+ K
Sbjct: 26 DYSVAL-FGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKL 84
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS------------------------- 169
C I K LHSQA+K G SD ++ L+++Y+
Sbjct: 85 CP-IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAM 143
Query: 170 --------------------------CWCL--------DQPDEAIKIFYRMEIENVKPNA 195
CW + P+EA+ +F RM KPN
Sbjct: 144 LTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNE 203
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
VT+++VL+A + L + + VH ++ +G +V + T L+D Y KC + A +F K
Sbjct: 204 VTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDK 263
Query: 256 M----LFPWNN 262
+ + WN+
Sbjct: 264 IDDKDVVAWNS 274
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 81/210 (38%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R++F + N ++ GYT + +EA + + M+ P+ S+ +C +
Sbjct: 157 RVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQL 216
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------DQPD-------- 177
+ +HS G+ + + L++MYS C L D D
Sbjct: 217 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 276
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGF 226
EA+++F M + P +T + +L+A + + + +K DE G
Sbjct: 277 VGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 336
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E +++ + V +A++L M
Sbjct: 337 EPKIEHYGCMVNLLGRAGHVEQAYELVKNM 366
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 121/284 (42%), Gaps = 48/284 (16%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL----------FFDPCA-----DYHVRLVFSQI 85
H +L +++ LKQ+HAQ+LR+ L CA DY + VF+ I
Sbjct: 24 HTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALS-VFNLI 82
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEK- 142
P + CN +R + + L Y M QGL DRF FP L K+ + + VE
Sbjct: 83 PKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------------- 176
++H A K G SD F+ L+ MY++C + +
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202
Query: 177 --DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
++A+ +F M+ NV+P+ + L VL+A RA +L K +H + E+ L++
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLV 278
L+ Y C + A +LF KM P N AM G +
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMT-PKNLVASTAMVTGYSKLGQI 305
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 77/298 (25%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTI 90
L +L + ++ E +IH + DP C RL+F ++ + +
Sbjct: 129 LKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDV 188
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
T + ++ GY L ++A L + EM + PD M ++ +C ++ K +H
Sbjct: 189 VTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDF 248
Query: 148 AIKFGLASDSFLHNTLINMYSS-------------------------------------- 169
++ + D L + L+ MY+S
Sbjct: 249 IMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENA 308
Query: 170 -------------CWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
CW D P EA+ +F M+ +KP+ VT+++V+TA A
Sbjct: 309 RSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHL 368
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
L K +H VD++GF + + L++ Y KC + RA +F KM P N W
Sbjct: 369 GALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKM--PRKNVISW 424
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 83/298 (27%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA----------DYHVRLV------FSQISNPTIY 91
E +++ EL Q HA +L++ L A + H + + FS+I NP Y
Sbjct: 15 EMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSY 74
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
N+I+R Y N A +H+M+ ++PD++ F KSC + +Q+H
Sbjct: 75 MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHV 134
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAI---------------------------- 180
+K GL D F+ NTLI++Y+SC C++ +
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAS 194
Query: 181 -KIFYRMEIENV-------------------------------KPNAVTLVNVLTARARA 208
++F ++NV KP+ TLV+VL+A A
Sbjct: 195 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 254
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
L + VH +D++G + T L+D Y KC + +A ++F K + WN+
Sbjct: 255 GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNS 312
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + + + N+++ GY++ E + + +M G+ PD S+ +CA +
Sbjct: 195 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 254
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------- 178
Q +H+ K G++ D F+ L++MYS C +++ E
Sbjct: 255 GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSII 314
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGF 226
A++IF M +E KPN VT V VL+A +RA L + + V G
Sbjct: 315 SGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGI 374
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E ++D + + A +L KM
Sbjct: 375 QPTIEHYGCMVDLLGRVGLLEEAEELVQKM 404
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 36/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCA--- 136
VF+ + T NS++R + N N+ A Y EM+ + +PDRF FPSL K CA
Sbjct: 34 VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
+ V K LH Q +K+ L SD ++ TL+NMY++C L
Sbjct: 94 EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 176 -------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
P+EA+ ++ +ME + P+ VT+ +++A A +DL ++H + E
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L + L++ Y KC + A +F K+ ++ W+
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWS 250
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 52/268 (19%)
Query: 47 LEKCSTMRELK-------QIHAQMLRTSLFFD--------PCADYH-VRLVFSQISNPTI 90
L+ C+ + E K Q+ ML + L+ + C D R +F ++ +
Sbjct: 86 LKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNK 145
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
S++ GY + +EA L Y +M G PD +L +CA D+ V +LHS
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
+ + + L + L+NMY+ C L ++ EA
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEA 265
Query: 180 IKIFYRME-IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+++F + N++PN VT++ V++A A+ DL T + VH + + V L +L+D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325
Query: 239 AYCKCKFVSRAWDLFVKM----LFPWNN 262
+ KC + A +F M L WN+
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNS 353
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 120/272 (44%), Gaps = 50/272 (18%)
Query: 53 MRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTIYTCNSI 96
M E KQ+HA +L+ +FFD CA DY +F+QI P+ + N++
Sbjct: 11 MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACS-IFTQIDEPSSFDYNTM 69
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGL 153
+RG N EA L Y +MI +G+ PD+F +P + K+C+ + V Q+H K GL
Sbjct: 70 IRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGL 129
Query: 154 ASDSFLHNTLINMYSSC--------------------W--------CLDQPDEAIKIFYR 185
D + N+LINMY C W C++ +E + + +
Sbjct: 130 EGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGK 189
Query: 186 MEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M E + TLVNVL+A K +H + + +V +KT+L+D Y K
Sbjct: 190 MSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSG 249
Query: 245 FVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
+ + +F K + N Y M + + G
Sbjct: 250 CLEKGLRVF-KNMSEKNRYSYTVMISGLAIHG 280
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 57/275 (20%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY---------HVRL 80
Q H L L +C+T+R L Q+HA +++ L P C D + R
Sbjct: 30 QQHPLLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQ 89
Query: 81 VFSQISNPT-IYTCNSIVRGYTN-------KNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
VF +I P + N+++RGY + EA + M+ +G+ PD + F SL
Sbjct: 90 VFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLL 149
Query: 133 KSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCW---------------CL- 173
K+CA +Q H A+K G A ++ TLINMY+ C C+
Sbjct: 150 KACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVV 209
Query: 174 ------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+P EA+ +F M+ + +K +VTL++VL+A A L + +H+ V
Sbjct: 210 SYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYV 269
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ S V++ T L+D Y KC + A +F M
Sbjct: 270 RKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM 304
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 32/168 (19%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R +F ++ + + N+++ + EA + + EM +GL
Sbjct: 186 MYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVT 245
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
S+ +CA + + + +H K L S ++ LI+MY C L+
Sbjct: 246 LISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGME 305
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI +F M+ + +KP+ VT + VL A
Sbjct: 306 SRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYA 353
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 134/280 (47%), Gaps = 54/280 (19%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCAD------YHVR 79
+S + C+ L+ C +M+ LKQI Q+LRT F C D ++
Sbjct: 27 SSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAE 86
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
+F+ I P ++ N +++ +T +A L + ++ +GL PD F +P +FK+
Sbjct: 87 RIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLG 146
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL--- 173
++ ++++ +K GL D+++ N+L++MY+ W +
Sbjct: 147 EVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLIS 206
Query: 174 -----DQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GF 226
+ ++A+ +F RM+ + +++PN T+V+ L+A + L K +H+ V E GF
Sbjct: 207 GYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGF 266
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+++ L+D YCKC +S A ++F +K + W +
Sbjct: 267 --TIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTS 304
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D L +IN Y ++ D+A+ +F M+I+ V P+ TLV +LT A+ L K
Sbjct: 329 DVVLWTAMINGYVQ---FNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGK 385
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+H +DE+ + T L++ Y KC F+ ++ ++F
Sbjct: 386 WIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIF 423
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
+++ GY N +A + EM ++ + PDRF +L CA + +Q +H +
Sbjct: 334 TAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDE 393
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDE----------------------------AIKI 182
+ D+ + LI MY+ C +++ E A+++
Sbjct: 394 NKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALEL 453
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F M VKP+ +T + VL+A
Sbjct: 454 FAEMVQTGVKPDDITFIGVLSA 475
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 143/330 (43%), Gaps = 56/330 (16%)
Query: 35 NSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-V 78
SQ ++ + L+ C ++L KQ+H +LR + + C +
Sbjct: 39 GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R +F + SN ++ + N ++ GY ++ L EAF + M +GL PD+F F S+ +C
Sbjct: 99 RRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSP 158
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
A + +++H + ++ GLA+++ + N LI+MY+ C +
Sbjct: 159 AALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 218
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
E++K ++ M E V+P+ +T +NVL+A L K++H + ES
Sbjct: 219 GAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH 278
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNNYGQWAMSATVGPQGLVGRHST 283
S V + T L Y KC V A ++F + + WN + V L H
Sbjct: 279 SDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTM----IGGLVDSGQLEEAHGM 334
Query: 284 AHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
H++ C ++ + ++L PG L
Sbjct: 335 FHRMLKECVAP-DRVTYLAILSACARPGGL 363
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 47/250 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L C ++ L KQIHAQ++ T ++ A R VF + N +
Sbjct: 253 LSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV 312
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
N+++ G + EA +H M+ + + PDR + ++ +CA + K++H++
Sbjct: 313 IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHAR 372
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
A+K GL SD N LINMYS + Q E+
Sbjct: 373 AVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVES 432
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
F +M + V+ N +T + VL A + L+ K +H V ++G ++ + + LM
Sbjct: 433 FSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSM 492
Query: 240 YCKCKFVSRA 249
Y KC V A
Sbjct: 493 YFKCGSVEDA 502
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 58/294 (19%)
Query: 42 FCLVS-LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQ 84
F VS L CS+ L +++H +++ L + C R VF
Sbjct: 146 FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDA 205
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---E 141
+++ + ++ Y E+ YH M+ +G+ P R + ++ +C +
Sbjct: 206 MASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG 265
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CL------------------ 173
KQ+H+Q ++ SD + L MY C CL
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDS 325
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
Q +EA +F+RM E V P+ VT + +L+A AR L K +H + G S V
Sbjct: 326 GQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFG 385
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
L++ Y K + A +F +M P + W LVG ++ Q+
Sbjct: 386 NALINMYSKAGSMKDARQVFDRM--PKRDVVSWT--------ALVGGYADCGQV 429
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 45/199 (22%)
Query: 57 KQIHAQMLRTSLFFD-------------PCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
K+IHA+ ++ L D + R VF ++ + + ++V GY +
Sbjct: 367 KEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADC 426
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLH 160
E+F + +M+ QG+ ++ + + K+C++ + K++H++ +K G+ +D +
Sbjct: 427 GQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVA 486
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N L++MY C ++ + EA++ F M+ E ++
Sbjct: 487 NALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMR 546
Query: 193 PNAVTLVNVLTARARARDL 211
PNA T VNV++A R R+L
Sbjct: 547 PNATTFVNVMSA-CRVRNL 564
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 44/241 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPTIYTC 93
L CS++ + + +H+ ++ L D C L +F ++ + T
Sbjct: 184 LNVCSSLEQGRILHSYIIEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTW 243
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++ Y + +A++FY +M+ +G++ D+F + ++ CA D+ KQ+H +K
Sbjct: 244 TSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMVK 303
Query: 151 FGLASDSFLHNTLINMYSSCW----------CLDQPD------------------EAIKI 182
G+A+D L +TLI+MY+ C +D+ D EA++
Sbjct: 304 SGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMDERDVVSYTALIVGHVRQGRFQEALQT 363
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M+ + V PN VT V VL A L +R+H + ++G LK L D Y K
Sbjct: 364 FSSMQRDGVLPNTVTFVGVLKACTGLGSLVEGRRIHASIIKAGLAQDSSLKYALADMYAK 423
Query: 243 C 243
C
Sbjct: 424 C 424
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 44/241 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVR--------LVFSQISNPTI 90
L C+++R L K++H M++ + D D + + +F+++ + +
Sbjct: 83 LSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEMKDRDV 142
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
T N I+ G EAF + M GL PD+ + + C+ + + LHS I+
Sbjct: 143 VTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSSLEQGRILHSYIIE 202
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKI 182
GL D ++ L+NMYS+C L+ P++A
Sbjct: 203 AGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEKAWIF 262
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+ +M E + + VL A DL K+VH + +SG + L +TL+D Y K
Sbjct: 263 YEKMLKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLIDMYAK 322
Query: 243 C 243
C
Sbjct: 323 C 323
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 36/219 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + ++T ++ GY EA+ Y +M+ + L D F ++ CA +
Sbjct: 30 RQVFDNMRERDMFTWTMMLTGYARLGHLEEAYRVYEQMLEERLPLDGVTFTTILSVCASL 89
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
K++H IK G+ SD L NTLI+MY+ C + Q
Sbjct: 90 RSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEMKDRDVVTWNIII 149
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
DEA ++F M +KP+ VT V VL L + +H + E+G
Sbjct: 150 AGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNV---CSSLEQGRILHSYIIEAGLE 206
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + T L++ Y C+ + A +F K+ P N W
Sbjct: 207 LDLWVGTALLNMYSNCRSLEDALQIFEKL--PERNLVTW 243
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 120 GLIPDRFMFPSL---FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G +P F+ +L + C I +Q+ + D F ++ Y+ L
Sbjct: 5 GFVPSTFVLNALLNMYMKCGSITDARQVFDNMRE----RDMFTWTMMLTGYAR---LGHL 57
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+EA +++ +M E + + VT +L+ A R L K+VH + ++G S L TL
Sbjct: 58 EEAYRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTL 117
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWN 261
+D Y KC + + +F +M + WN
Sbjct: 118 IDMYAKCGNIRQGHTMFTEMKDRDVVTWN 146
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 52/274 (18%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DYHVRL 80
N + CL L+ C+T +L QIH Q+L+ L +P DY
Sbjct: 27 NKREAEQRCLSLLQDCNTFSKLTQIHTQILKLGLSNNPLVLTKYTSTSSNLHAIDYASSF 86
Query: 81 VFSQISNPTIYTC---NSIVRGYTNKN--LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+FS S+ +Y N+I+R Y + N +A Y M+ ++P++F +P + K+C
Sbjct: 87 IFSPESDKRLYDTFLFNTIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKAC 146
Query: 136 ADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSS---------------------CW 171
A I + K +H +KFG +D + NT+++MY W
Sbjct: 147 AGIGYLNLGKSVHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSW 206
Query: 172 C--------LDQPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
L + +AI +F M+IE V +P+ +T+V+VL+A L K V ++
Sbjct: 207 SAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIE 266
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ VEL L+D + KC V +A LF M
Sbjct: 267 KEKVQKSVELCNALIDMFAKCGDVDKAIKLFRNM 300
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 60/322 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L+ C ++L KQ+H +LR + + C + R +F + SN ++
Sbjct: 35 LQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSV 94
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ N ++ GY ++ L EAF + M + L PD+F F S+ +C+ V +++H +
Sbjct: 95 VSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVR 154
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
++ GLA+D+ + N LI+MY+ C + +E+
Sbjct: 155 VMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEES 214
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K ++ M E V+P+ +T +NVL+A L K++H + ES + S V + T L
Sbjct: 215 LKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKM 274
Query: 240 YCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI--SGPCPK 293
Y KC A ++F + + WN + V L H T H++ G P
Sbjct: 275 YMKCGAFKDAREVFECLSYRDVIAWNTM----IRGFVDSGQLEEAHGTFHRMLEEGVAPD 330
Query: 294 KAHKLFFFSMLKKVHVPGVLIQ 315
+A + ++L PG L +
Sbjct: 331 RA---TYTTVLSACARPGGLAR 349
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 119/291 (40%), Gaps = 59/291 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L C ++ L KQIHA ++ T ++ A R VF +S +
Sbjct: 237 LSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDV 296
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
N+++RG+ + EA +H M+ +G+ PDR + ++ +CA + K++H++
Sbjct: 297 IAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHAR 356
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
A K GL SD N LINMYS + DQ E+
Sbjct: 357 AAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVES 416
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
F +M + VK N +T + VL A + L+ K +H V ++G + + + LM
Sbjct: 417 FTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSM 476
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
Y KC V A +F M + WN +G G GR A Q
Sbjct: 477 YFKCGSVEDAIRVFEGMSMRDVVTWNTL--------IGGLGQNGRGLEALQ 519
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 109/294 (37%), Gaps = 58/294 (19%)
Query: 42 FCLVS-LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQ 84
F VS L CS+ L ++IH +++ L + C R VF
Sbjct: 130 FTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDA 189
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---E 141
+++ + ++ Y E+ YH M+ + + P R + ++ +C +
Sbjct: 190 MASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG 249
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLD----------------- 174
KQ+H+ ++ SD + L MY C CL
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDS 309
Query: 175 -QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
Q +EA F+RM E V P+ T VL+A AR L K +H + G S V
Sbjct: 310 GQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFG 369
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
L++ Y K + A +F +M P + W L+GR++ Q+
Sbjct: 370 NALINMYSKAGSMKDARQVFDRM--PKRDVVSWTT--------LLGRYADCDQV 413
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 120/272 (44%), Gaps = 54/272 (19%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQM-----------------LRTSLFFDPCADYHVRLV 81
Q H L L C+++R L Q+HA L T P + R V
Sbjct: 24 QQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHLAYARQV 83
Query: 82 FSQISNPTIYT-CNSIVRGYT-----NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
F ++ +P N+++RGY + + A + M+ +G+ PD + F SL K+C
Sbjct: 84 FDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKAC 143
Query: 136 ADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSC---------------WCL---- 173
A +Q H+ A+K G A ++ TLINMY+ C C+
Sbjct: 144 AAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYN 203
Query: 174 ---------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+P EA+ +F M+ + +KP +VT+++VL+A A L + VH V +
Sbjct: 204 AMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKI 263
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G S V++ T L+D Y KC + A D+F M
Sbjct: 264 GLGSLVKVSTALIDMYAKCGSLEDAIDVFQGM 295
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 47/205 (22%)
Query: 47 LEKCSTMR---ELKQIHA----------QMLRTSLF--FDPCADYHV-RLVFSQISNPTI 90
L+ C+ R E +Q HA +R +L + C D R++F +
Sbjct: 140 LKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCV 199
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+++ + EA + + EM +GL P S+ +CA + + + +H
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDY 259
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
K GL S + LI+MY+ C L+ EA
Sbjct: 260 VRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREA 319
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
I +F M+ E +KP+ +T + VL A
Sbjct: 320 ISLFEEMKKEGMKPDDITFLGVLYA 344
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 124/280 (44%), Gaps = 58/280 (20%)
Query: 51 STMRELKQIHAQMLR-----------TSLF----FDPCADY-HVRLVFSQISNPTIYTCN 94
+++ + Q+HAQ+L+ T LF P D + L+ + +S + N
Sbjct: 4 TSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHN 63
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIP--DRFMFPSLFKSCADI---YVEKQLHSQAI 149
+++R Y+ +A + M+ Q P D+F +P L KSCA + V KQLH
Sbjct: 64 TMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIY 123
Query: 150 KFGLASDSFLHNTLINMYSSC--------------------WCL--------DQPDEAIK 181
K GL SD ++ N LI+MYSSC W D+ EAI+
Sbjct: 124 KSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIR 183
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M + V+PN T+V+VL A A A + +RV ++E ++T L+D Y
Sbjct: 184 LFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYA 243
Query: 242 KCKFVSRAWDLFV----KMLFPWNNYGQWAMSATVGPQGL 277
KC + A +F K +F W AM + + GL
Sbjct: 244 KCGSIGSARKVFDGIVNKDVFAWT-----AMISGLANHGL 278
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 56/286 (19%)
Query: 35 NSQYQAHFC----LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY-------------- 76
N+ +A C L L+ C++ L ++H +++R L DPC
Sbjct: 9 NTTSRARACRDSLLAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHD 68
Query: 77 --HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ R VF +++ PT N ++RGY + + +A + M G+ PD + ++ +S
Sbjct: 69 MPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQS 128
Query: 135 CADIYVEK------QLHSQAIKFGLASDSFLHNTLINMYSSC------------------ 170
A K +H+ + G ASD F+ + LIN Y +
Sbjct: 129 SAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDV 188
Query: 171 --WCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
W L Q D ++ M+ E KPN +T++++L+A + R + V+
Sbjct: 189 VSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYAR 248
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
VDE G + V+++ L+ Y KC +S AW F M P N W
Sbjct: 249 VDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGM--PIRNTKSW 292
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 41/226 (18%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N+++ G+ H EA + EM+ G+IPD S+ + A D+ + LH+
Sbjct: 293 NTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKD 352
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
+ D L N+LINMY+ C + + A +
Sbjct: 353 HEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNL 412
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M++ +V + + LV++L+A ++ L + +H + E + + L++ L+D Y K
Sbjct: 413 FDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAK 472
Query: 243 CKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
C + A ++F +M WN AM + QG G+ + A
Sbjct: 473 CGCIDAAAEIFSRMRHKQTLAWN-----AMIGGLASQGQ-GKEAVA 512
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ + + ++ + EM +G P++ SL +C +
Sbjct: 177 RKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQV 236
Query: 139 Y-VEKQL--HSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
V+K L +++ ++G+ +D + N LI MY C C+
Sbjct: 237 RAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLI 296
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+ +F M + V P+ +TLV+VL+ A+ DL+ + +H + +
Sbjct: 297 DGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIH 356
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+ +L++ Y KC ++ A +F M
Sbjct: 357 CDIILQNSLINMYAKCGDMAAAEIIFENM 385
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 58 QIHAQM-LRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFY 113
+IH + L+ SL + C D ++F ++ I + ++V GY AF +
Sbjct: 354 EIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLF 413
Query: 114 HEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
+M V+ ++ SL +C+ + +++HS + + +D +L + L++MY+ C
Sbjct: 414 DDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKC 473
Query: 171 WCLD----------------------------QPDEAIKIFYR-MEIENVKPNAVTLVNV 201
C+D Q EA+ +F + +++ + KP+A+TL V
Sbjct: 474 GCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVV 533
Query: 202 LTA 204
L A
Sbjct: 534 LCA 536
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 48/257 (18%)
Query: 53 MRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTCNSIVRG 99
++ L Q++ Q++ + L F + C + + F ++S P I N+I++G
Sbjct: 15 LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASD 156
YT KN+ Y +M + + P+ F F + K+C VE KQ+H Q K+G S+
Sbjct: 75 YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134
Query: 157 SFLHNTLINMYSS--------------------CWCL--------DQPDEAIKIFYRMEI 188
F+ N+L++MY+ W P EA+ +F M
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 194
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
NVKP+ + LV+V+TA DL K +H V + G ++ +L Y K V
Sbjct: 195 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEV 254
Query: 249 AWDLFVKMLFP----WN 261
A F +M P WN
Sbjct: 255 ARFFFNRMEKPNLILWN 271
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F+++ P + N+++ GY N EA + EMI + + D S + A +
Sbjct: 256 RFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQV 315
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+ + L K D+F++ LI+MY+ C W +
Sbjct: 316 GSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMI 375
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EAI ++ M+ V PN T + +LTA + ++ + + + G
Sbjct: 376 MGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 435
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H + + ++D + ++++A+D + M
Sbjct: 436 PHHQHYSCVVDLLGRAGYLNQAYDFIMSM 464
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 111/268 (41%), Gaps = 60/268 (22%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY----------------------HVRLVFSQ 84
+ +C +R L+ HA LR L P Y + R +F Q
Sbjct: 27 VRRCPGLRALRGAHAHFLRLRL---PRLTYAFALSKLLASCAAASATTVASSYARALFDQ 83
Query: 85 ISNPTIYTCNSIVRGYTNKNLHH-----EAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI 138
I PT + NS++R + + FL Y M+ G P+ F + K+C +
Sbjct: 84 IPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKACTAL 143
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WC----- 172
+QLH+QA GL ++ L+N+Y+ C W
Sbjct: 144 GEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGG 203
Query: 173 ---LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ +EA+ +F M+ V P+ VT+V+V++A A+A L K VH +D G
Sbjct: 204 YSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVD 263
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML 257
+EL T L+D Y KC + RA +F M+
Sbjct: 264 LELSTALIDMYAKCGLIERAKSVFDSMV 291
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 116/257 (45%), Gaps = 49/257 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCA-----------DYHVRLVFSQ--ISNPTIY- 91
SL+ C T+ ELK H + + L D A L F++ N Y
Sbjct: 37 SLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYG 96
Query: 92 TC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
TC NS++RGY + L EA L + M+ G+ PD++ FP CA D Q+H
Sbjct: 97 TCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIH 156
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PD 177
IK A D F+ N+L++ Y+ C LD
Sbjct: 157 GLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAK 216
Query: 178 EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A+ +F+RM E+V PN+VT+V V++A A+ DL T ++V+ + +SG + + + L
Sbjct: 217 DAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISAL 276
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y KC + A LF
Sbjct: 277 VDMYMKCNAIDIAKRLF 293
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 98/231 (42%), Gaps = 37/231 (16%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRF 126
F+ C + R VF ++S + + S++ GY + +A LF+ + + +IP+
Sbjct: 177 FYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSV 236
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------- 174
+ +CA D+ ++++ G+ + + + L++MY C +D
Sbjct: 237 TMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEY 296
Query: 175 -------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
EA+ + M ++P+ +++++ +++ ++ R++ K
Sbjct: 297 GASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGK 356
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
H V +GF S + L+D Y KC A+ +F +M + WN+
Sbjct: 357 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 407
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 56/227 (24%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISN 87
L ++ CS +R + K H +LR + D +++ +F ++SN
Sbjct: 340 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 399
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQ 147
T+ T NSIV GY A+ ++ M + ++ + +L +
Sbjct: 400 KTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQE------------- 446
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARA 206
NMY +EAI++F+ M+ E V + VT++++ +A
Sbjct: 447 -----------------NMY---------EEAIEVFHYMQSQECVNVDGVTMMSIASACG 480
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K ++ ++++ V L TTL+D + +C A +F
Sbjct: 481 HLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIF 527
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLF-KSCA-----DIYVEKQLHSQAIKFGLASDSFLHN 161
E +F+ + QGL D L +SC + K++ +G F++N
Sbjct: 46 ELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTC---FMYN 102
Query: 162 TLINMY-SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+LI Y SS C EAI +F RM + P+ T L+ A++RD ++H
Sbjct: 103 SLIRGYASSGLC----KEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGL 158
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + + + ++ +L+ Y +C + A +F +M
Sbjct: 159 IIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEM 194
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI 149
++ N+I+ G+ E F FY +M +G++PD+F FP K+C D+ K++H
Sbjct: 104 VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLF 163
Query: 150 KFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIK 181
KFGL D F+ + L+N Y ++ Q + ++
Sbjct: 164 KFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLE 223
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F RM E+V P+ T+ L+ A DL + +H + G+ S V + +L+D Y
Sbjct: 224 TFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYG 283
Query: 242 KCKFVSRAWDLFVKM----LFPWNN 262
KCK + A ++F M +F WN+
Sbjct: 284 KCKCIEDALEIFEMMREKDIFSWNS 308
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTIYT 92
+++ C + E+K+IH + + L D H ++ F ++ +
Sbjct: 145 AIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVL 204
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP---SLFKSCADIYVEKQLHSQAI 149
N++V GY + M + ++P RF S+F D+ + +H A+
Sbjct: 205 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAM 264
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIK 181
K G S + N+LI+MY C C++ D ++
Sbjct: 265 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLR 324
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW------SHVELKTT 235
+ RM ++P+ VT+ VL A + L + +H + SG V LK
Sbjct: 325 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNA 384
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++D Y KC + A +F +M + WN
Sbjct: 385 VIDMYAKCGSMRDAHLVFERMSNKDVASWN 414
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 56/310 (18%)
Query: 4 PLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELK---QIH 60
P P QT P S D L+ I+ N ++ L+S +C T + L+ QIH
Sbjct: 23 PAPKLIQT-VPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLS--QCCTTKSLRPGLQIH 79
Query: 61 AQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
A + ++ L DP H+ R + + S P + + ++++ GY L
Sbjct: 80 AHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGG 139
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLI 164
A + +HEM + G+ + F F S+ K+C+ D+ + KQ+H + G D F+ NTL+
Sbjct: 140 GALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV 199
Query: 165 NMYSSC--------------------W-----CLDQPD---EAIKIFYRMEIENVKPNAV 196
MY+ C W C Q D EA+ +FY M + +KPN
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEF 259
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGF-WSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+L +++ A RD K +H + + G+ W L+D Y K ++ A +F K
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS-ANALVDMYAKVGDLADAISVFEK 318
Query: 256 MLFP----WN 261
+ P WN
Sbjct: 319 IKQPDIVSWN 328
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + + + + S++ Y EA + EM L PDRF+ SL +CA++
Sbjct: 490 IFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 549
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
KQLH +K+G D F N+L+NMY+ C +D
Sbjct: 550 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 609
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWS 228
+A+++F +M E V PN +TLV+VL A A + K + ++E GF
Sbjct: 610 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 669
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN--YGQWAMSATVGPQGLVGRHST 283
E ++D + ++ A +L KM F N +G +A + +GR +
Sbjct: 670 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAA 726
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 110/281 (39%), Gaps = 80/281 (28%)
Query: 41 HFCLVSL-EKCSTMREL---KQIHAQMLRTSLFFDP-----CADYHVRL--------VFS 83
F L S+ C+ +R+ K IH +++ +DP D + ++ VF
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
+I P I + N+++ G H +A +M ++Q
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM------------------------KRQ 353
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------------------ 177
LHS +K + SD F+ L++MYS C L+ P+
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ +F M E + N TL +L + A + + ++VH +SGF S + + +
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473
Query: 236 LMDAYCKCKFVSRA---------WDL--FVKMLFPWNNYGQ 265
L+D+Y KC V A DL F M+ + YGQ
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 514
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 35/240 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R+ F+ + + N+I+ GY+ EA + EM +G+ ++ ++ KS A
Sbjct: 387 RMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL 446
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
++V +Q+H ++K G SD ++ N+LI+ Y C ++
Sbjct: 447 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 506
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q +EA+K+F M+ +KP+ ++L A A K++H + + GF
Sbjct: 507 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 566
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+ +L++ Y KC + A F ++ G + SA +G G A Q+
Sbjct: 567 LDIFAGNSLVNMYAKCGSIDDAGRAFSEL----TERGIVSWSAMIGGLAQHGHGRQALQL 622
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 56/258 (21%)
Query: 56 LKQIHAQMLRTSLFFD-----------------PCADYHVRLVFSQISNPTIYTCNSIVR 98
L QI+A++L T L + CA R +F + +P ++ N+IVR
Sbjct: 91 LNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCA----RKLFDKFPDPDVFLWNAIVR 146
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLAS 155
Y+ A Y M V + PD F FP + K+C+ + + +++H Q + G S
Sbjct: 147 CYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFES 206
Query: 156 DSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRME 187
D F+ N L+ +Y+ C + QP EA++IF M
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMR 266
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
NV+P+ + LV+VL A DL K +H CV + G +L +L Y KC V
Sbjct: 267 KTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVM 326
Query: 248 RAWDLFVKMLFP----WN 261
A F ++ P WN
Sbjct: 327 VARLFFNQVENPSLIFWN 344
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 51/284 (17%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTI 90
L+ CS + L +++H Q+ R + C + VF ++ + TI
Sbjct: 180 LKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTI 239
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ SI+ GY EA + EM + PD S+ ++ D+ K +H
Sbjct: 240 VSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGC 299
Query: 148 AIKFGLASDSFLHNTLINMYSSCW----------CLDQP------------------DEA 179
IK GL + L +L ++Y+ C ++ P +EA
Sbjct: 300 VIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEA 359
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I++F M+ +N++P+++T+ + + A A+ L + + + + S F + V + T+L+D
Sbjct: 360 IELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDT 419
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHS 282
Y KC V A +F ++ P + W AM G G GR S
Sbjct: 420 YAKCGSVDMARFVFDRI--PDKDVVVWSAMMVGYGLHGQ-GRES 460
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RL F+Q+ NP++ N+++ GY EA + M + + PD S +CA I
Sbjct: 329 RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ + + +D ++ +LI+ Y+ C +D
Sbjct: 389 GSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMM 448
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q E+I +F+ M V PN VT V +LTA
Sbjct: 449 VGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTA 485
>gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
Length = 1203
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 116/262 (44%), Gaps = 49/262 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQIS 86
CL L++C M E +Q HAQ+L+ F +P CA DY +F QI
Sbjct: 895 CLSLLKRCQNMEEFRQAHAQILKWGFFSNPFCASNLVATCALSHWGSMDYACS-IFRQID 953
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
P + N++++GY + A L Y+EM+ + + D F +P+L K+CA I Q
Sbjct: 954 QPGSFEYNTMIKGYVSDFKMENALLLYYEMLEKEVQSDNFTYPALIKACAWLRAIDESMQ 1013
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQ 175
+H K G D ++ N+LINMY C W L
Sbjct: 1014 IHGHIFKLGFEEDLYVQNSLINMYGKCGKIELSCDVFKQIEHKDIASWSSIIAAHSSLGL 1073
Query: 176 PDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
E ++ F M + + +P LV+VL+A + L + +H + + +V ++T
Sbjct: 1074 WSECVQFFEEMIQDRSYRPEESLLVSVLSACSHLGALDLGRCLHGVLLRNFSELNVTVQT 1133
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
+L+D Y C + + + LF +M
Sbjct: 1134 SLIDMYINCGCIEKGFCLFQRM 1155
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV-QGLIPDRFMFPSLFKSCADIY 139
VF QI + I + +SI+ +++ L E F+ EMI + P+ + S+ +C+ +
Sbjct: 1049 VFKQIEHKDIASWSSIIAAHSSLGLWSECVQFFEEMIQDRSYRPEESLLVSVLSACSHLG 1108
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ + LH ++ + + +LI+MY +C C+++ +F RM +N
Sbjct: 1109 ALDLGRCLHGVLLRNFSELNVTVQTSLIDMYINCGCIEK---GFCLFQRMSKKN 1159
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 140/313 (44%), Gaps = 57/313 (18%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD---------PCADYH----VRLVFSQISNP 88
F + +L KC + ++KQ+HAQ+ T + D CA + L+F+++
Sbjct: 5 FFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEER 64
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ + ++ G+ + F + E+I G PD F P + K+C D + + + +H
Sbjct: 65 DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIH 124
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
S +K GL D+F+ +TL++MY+ C +D +P+
Sbjct: 125 STVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPN 184
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E+ +F +M + P+ V +V ++ A A+ + + VH V + VEL T ++
Sbjct: 185 ESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMI 244
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI------SGPC 291
D Y KC + + ++F +M N W SA +G G G+ A ++ SG
Sbjct: 245 DMYAKCGSIDSSREIFDRM--EQKNVISW--SAMIGAYGYHGQGREALELFHMMLNSGII 300
Query: 292 PKKAHKLFFFSML 304
P +++ F S+L
Sbjct: 301 P---NRITFISLL 310
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + ++++ Y EA +H M+ G+IP+R F SL +C+
Sbjct: 257 REIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHA 316
Query: 139 YVEK---QLHS-QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+ QL S ++ +G+ D + ++++ LDQ A+++ ME+E
Sbjct: 317 GLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQ---ALRLIENMEVE 368
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 39/272 (14%)
Query: 23 LINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY------ 76
L +I+++ +N + Q CL L CS+M+ L QI CA
Sbjct: 654 LSEFTDISSDKMNVKPQQ--CLSLLNLCSSMKHLFQIRGHGFIAGPLLRFCASSPLGNLN 711
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H R++ S + + N ++R Y ++ EA Y EM G+ PD+ FP L K+CA
Sbjct: 712 HARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACA 771
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-- 171
I +++ +K GL + ++ NT+I+ Y SC W
Sbjct: 772 AISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNA 831
Query: 172 ----CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+D +++ +F +M P+ T+V +L+A + +L + VH V E G
Sbjct: 832 VLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKG 891
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ L T L+D Y KC V A +F +ML
Sbjct: 892 MVVNCRLGTALVDMYAKCGAVCEASLVFHRML 923
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 136/312 (43%), Gaps = 62/312 (19%)
Query: 16 LSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--- 72
LS NSPL ++ +N+++ L L++C +M E K++HA +L+ LF+D
Sbjct: 13 LSLPNSPL------QSSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCG 66
Query: 73 ------CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
CA +Y +F QI P + N+++RG N EA L Y EM+ +
Sbjct: 67 SNLVASCALSRWGSMEYACS-IFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLER 125
Query: 120 GLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G+ PD F +P + K+C+ + K Q+H+ GL D F+ N LI+MY C ++
Sbjct: 126 GIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEH- 184
Query: 177 DEAIKIFYRMEIENVKP---------------NAVTLVNVLTARARARDLRTV------- 214
A +F +M+ ++V + L+ ++ R R ++
Sbjct: 185 --AGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSA 242
Query: 215 ----------KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264
+ +H + + +V +KT+L+D Y KC + + +F M N Y
Sbjct: 243 CTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHK-NRYS 301
Query: 265 QWAMSATVGPQG 276
M A + G
Sbjct: 302 YTVMIAGLAIHG 313
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 37/233 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCA------------------DYHVRLVFSQI 85
L SLE CS + LK IHA M+RT + D A DY R +FSQI
Sbjct: 21 LFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASR-IFSQI 79
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEK 142
NP ++ N+++RG++ +AF FY + QGL+PD FP L KSC ++ +
Sbjct: 80 QNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGS 139
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL 202
Q H IK G D ++ N+L++MY++ + A IF RM +V V+ +++
Sbjct: 140 QAHGHIIKHGFEKDVYVQNSLVHMYAT---FGDTEAATLIFQRMYYVDV----VSWTSMI 192
Query: 203 TARARARDLRTVKRVHKCVDESGF--WSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ D+ + +++ + E WS T++ Y + +A +LF
Sbjct: 193 RGFNKCGDVESARKLFDQMPEKNLVTWS------TMISGYAQNNHFDKAVELF 239
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F+ C D R +F Q+ + T ++++ GY N +A + + QG+ + +
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVM 254
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
S+ SCA + + ++ H +K G+ + L L++MY+ C +D+
Sbjct: 255 VSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDK 304
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 54/270 (20%)
Query: 47 LEKCSTMR--ELKQIHAQMLRTSLFFDPCADYHVRLV----------------FSQISNP 88
L KC+T+ KQ+HA + T F P + +L+ FSQI P
Sbjct: 9 LSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTP 68
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
+ N+I+RG+ AF +Y MI + D + K+CA + Q+H
Sbjct: 69 STNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIH 128
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
+ ++ G +D+ L TL+++Y+ +D +P
Sbjct: 129 THIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPT 188
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F RMEI+ KPN ++++ L+A A+ D + +++H + F + ++ ++
Sbjct: 189 EALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVI 248
Query: 238 DAYCKCKFVSRAWDLFVKM-----LFPWNN 262
D Y KC FV +A+ +F M + WN
Sbjct: 249 DMYAKCGFVDKAYLVFESMSCRKDIVTWNT 278
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 52/265 (19%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY----HVRLVFSQI 85
CL LE C + ++ QIHAQ + L FF H RL+FSQI
Sbjct: 13 LCL--LESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQI 70
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYVEK-- 142
P ++ N+++RGY+ + EA + Y MI +G+ P+ F FP L SCA + +
Sbjct: 71 DCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPG 130
Query: 143 -QLHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------------- 173
++HS IK G SD F+ N LI++YS L
Sbjct: 131 HEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEV 190
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES--GFWSHVE 231
+QP+ A+ +F M+ + P+ T V + + + + K++H V ++ S++
Sbjct: 191 NQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNIL 250
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM 256
LK+ ++D Y KC ++ A +F M
Sbjct: 251 LKSAIVDMYAKCGLINIAERVFSTM 275
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F + + + N++++GY N A + EM G++PD F F +LF C+
Sbjct: 165 ARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSV 224
Query: 137 --DIYVEKQLHSQAIKFGLASDS--FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192
+ V KQ+H+Q K + DS L + +++MY+ C ++ + ++F M
Sbjct: 225 LNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAE---RVFSTM---GTS 278
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
+A +++ AR ++ +++ + E S T ++ Y + S A +L
Sbjct: 279 KSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISW----TAMISGYSQAGQCSEALEL 334
Query: 253 FVKM 256
F +M
Sbjct: 335 FKEM 338
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ C +I V ++L + + D +I+ YS Q EA+++F ME +
Sbjct: 291 YARCGEINVARKLFNHMHE----RDVISWTAMISGYSQA---GQCSEALELFKEMEALGI 343
Query: 192 KPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
KP+ VTLV VL+A AR KR+ H+ ++ F + L +MD Y KC + A
Sbjct: 344 KPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSAL 403
Query: 251 DLFVKM 256
++F ++
Sbjct: 404 EIFRRV 409
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 36/229 (15%)
Query: 70 FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C + +V R +F+ + + + +++ GY+ EA + EM G+ PD
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350
Query: 129 PSLFKSCADIY---VEKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCLDQPDE------ 178
++ +CA + + K+L+ Q I+ G+ ++ L +++MY+ C +D E
Sbjct: 351 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 410
Query: 179 ------------------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
AI +F + +KP+ VT V VL A + +
Sbjct: 411 KNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEG 470
Query: 215 KRVHKCV-DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
K++ + + + G +E ++D + + A+DL KM F N+
Sbjct: 471 KKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS 519
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 46/250 (18%)
Query: 53 MRELKQIHAQMLRTS-----------LFFDPCADY----HVRLVFSQISNPTIYTCNSIV 97
M++LKQIHA++++ + F A++ + VF +I +P + N+++
Sbjct: 1 MKDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMI 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
RG+ N +AF +Y M +GL+ D F F L K C + + + +H +K GL
Sbjct: 61 RGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLN 120
Query: 155 SDSFLHNTLINMYSS--------------------CWCL--------DQPDEAIKIFYRM 186
S F+ NTL++MY + W + + +EA+++F RM
Sbjct: 121 SHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRM 180
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
++P+ T V +L+A + L + VH C+ G E+ +L+D Y KC +
Sbjct: 181 LKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGAL 240
Query: 247 SRAWDLFVKM 256
A+++F M
Sbjct: 241 QEAFEIFNGM 250
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 15/217 (6%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL--FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGY 100
L L CST++ H +R +L + D R +F +I NP + N I+ +
Sbjct: 106 LGRLMHCSTLKRGLNSHV-FVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCH 164
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS 157
+ +EA + M+ G+ PD F + +C+ + + +HS G +
Sbjct: 165 VSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCIT 224
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
++N+L++MY+ C L EA +IF M K N VT ++ A +
Sbjct: 225 EVNNSLLDMYAKCGAL---QEAFEIFNGMN----KKNTVTWNTMILGLASHGYANEALAL 277
Query: 218 HKCVDESGFWSHVELKTTLMDAYCK-CKFVSRAWDLF 253
+ E W+ ++ ++ + C V + W F
Sbjct: 278 FSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFF 314
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 128/274 (46%), Gaps = 55/274 (20%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP--------------CADY-HVRLVFSQISNPTIYTCN 94
C+++ + KQ HA +LRT L +P D + R +F+Q+ NP + CN
Sbjct: 21 CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKF 151
+++RGY +EA Y+ M+ +G+ D + +P + +CA + + ++ H + +K
Sbjct: 81 TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140
Query: 152 GLASDSFLHNTLINMYSSCWCL----DQPDE------------------------AIKIF 183
G SD F+ N LI Y +C D DE A +
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200
Query: 184 YRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVH---KCVDESGFWSHVELKTTLMDA 239
M +++N++P+ VT+V+++ A A+ +L K +H K +D+ + L+T L+D
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDM 260
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNNY-GQWAM 268
Y KC + A +F +M +F WN G AM
Sbjct: 261 YAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 294
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 53/263 (20%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD------------PCAD----YHVRLVFSQISNPTI 90
L+ + + ++ QIHA +++TSL + C+ + R VF +I +P
Sbjct: 4 LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDT 63
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCA---DIYVEKQLHS 146
+ N+++R Y N E+ + +M Q IP D + + ++C D ++LH+
Sbjct: 64 FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 123
Query: 147 QAIKFGLASDSFLHNTLINMYSS-----------------------CW--------CLDQ 175
Q +K GL SD F+ LI MY+ W L
Sbjct: 124 QVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIHGHASLGD 183
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+++F+ M++ NV P+ VT+V+VL+A L K +H+C++ + ++L T+
Sbjct: 184 SNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTS 243
Query: 236 LMDAYCKCKFVSRA--WDLFVKM 256
L+D Y KC + + WD V +
Sbjct: 244 LVDMYAKCGDIDNSLRWDKVVNV 266
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 17/172 (9%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTV 214
D+F+ NT+I Y + P E++ +F++M + P ++ +L V+ A R +D
Sbjct: 62 DTFIWNTMIRAYLNS---QNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNG 118
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-------WNN--YGQ 265
+++H V + G S + ++T L++ Y K + A ++ +M P WN +G
Sbjct: 119 QKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIHGH 178
Query: 266 WAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVLIQVH 317
A++G R Q++ P K + S V G+ +H
Sbjct: 179 ----ASLGDSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIH 226
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 56/310 (18%)
Query: 4 PLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELK---QIH 60
P P QT P S D L+ I+ N ++ L+S +C T + L+ QIH
Sbjct: 23 PAPKLIQT-VPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLS--QCCTTKSLRPGLQIH 79
Query: 61 AQMLRTSLFFDP------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
A + ++ L DP C ++ + R + + S P + + ++++ GY L
Sbjct: 80 AHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGG 139
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLI 164
A + +HEM + G+ + F F S+ K+C+ D+ + KQ+H + G D F+ NTL+
Sbjct: 140 GALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV 199
Query: 165 NMYSSC--------------------W-----CLDQPD---EAIKIFYRMEIENVKPNAV 196
MY+ C W C Q D EA+ +FY M + +KPN
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEF 259
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGF-WSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+L +++ A RD K +H + + G+ W L+D Y K ++ A +F K
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS-ANALVDMYAKVGDLADAISVFEK 318
Query: 256 MLFP----WN 261
+ P WN
Sbjct: 319 IKQPDIVSWN 328
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 59/284 (20%)
Query: 41 HFCLVSL-EKCSTMREL---KQIHAQMLRTSLFFDP-----CADYHVRL--------VFS 83
F L S+ C+ +R+ K IH +++ +DP D + ++ VF
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-- 141
+I P I + N+++ G H +A +M G+ P+ F S K+CA + ++
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKEL 377
Query: 142 -KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD--------------- 177
+QLHS +K + SD F+ L++MYS C L+ P+
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437
Query: 178 -----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
EA+ +F M E + N TL +L + A + + ++VH +SGF S + +
Sbjct: 438 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 497
Query: 233 KTTLMDAYCKCKFVSRA---------WDL--FVKMLFPWNNYGQ 265
+L+D+Y KC V A DL F M+ + YGQ
Sbjct: 498 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 541
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + + + + S++ Y EA + EM L PDRF+ SL +CA++
Sbjct: 517 IFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 576
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
KQLH +K+G D F N+L+NMY+ C +D
Sbjct: 577 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 636
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWS 228
+A+++F +M E V PN +TLV+VL A A + K + ++E GF
Sbjct: 637 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 696
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
E ++D + ++ A +L KM F N
Sbjct: 697 MQEHYACMIDLLGRAGKINEAVELVNKMPFEAN 729
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 51/289 (17%)
Query: 46 SLEKCSTM--REL-KQIHAQMLRTSLFFD-----PCADYH--------VRLVFSQISNPT 89
+L+ C+ M +EL +Q+H+ +++ + D D + R+ F+ +
Sbjct: 365 ALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD 424
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ N+I+ GY+ EA + EM +G+ ++ ++ KS A ++V +Q+H
Sbjct: 425 LIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 484
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDE 178
++K G SD ++ N+LI+ Y C ++ Q +E
Sbjct: 485 LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEE 544
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+K+F M+ +KP+ ++L A A K++H + + GF + +L++
Sbjct: 545 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVN 604
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
Y KC + A F ++ G + SA +G G A Q+
Sbjct: 605 MYAKCGSIDDAGRAFSEL----TERGIVSWSAMIGGLAQHGHGRQALQL 649
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 53/280 (18%)
Query: 36 SQYQAHFCLVSLEKCS---TMRELKQIHAQMLRTSLFFDPCA--------------DYHV 78
S Y C+ +L+ C+ + + K++H +L+ + F P A D+ +
Sbjct: 25 STYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSL 84
Query: 79 RLV-FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R+ F N ++ N+++ G+ L A Y++M G+ PD+F FP + ++C D
Sbjct: 85 RVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGD 144
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMY--------------------------- 167
+V ++H K GL D F+ + L+N Y
Sbjct: 145 DDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAM 204
Query: 168 -SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ + + +EA+ +F RM V P T+ VL+ + D + VH V + G+
Sbjct: 205 VNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGY 264
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
S V + L+D Y KCK V A +F M +F WN+
Sbjct: 265 ESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNS 304
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 48/256 (18%)
Query: 54 RELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTCNSIVRGY 100
+ L Q++ Q++ + L F + C + + F ++S P I N+I++GY
Sbjct: 1 KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASDS 157
T KN+ Y +M + + P+ F F + K+C VE KQ+H Q K+G S+
Sbjct: 61 TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120
Query: 158 FLHNTLINMYSS--------------------CWCL--------DQPDEAIKIFYRMEIE 189
F+ N+L++MY+ W P EA+ +F M
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQC 180
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NVKP+ + LV+V+TA DL K +H V + G ++ +L Y K V A
Sbjct: 181 NVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVA 240
Query: 250 WDLFVKMLFP----WN 261
F +M P WN
Sbjct: 241 RFFFNRMEKPNLILWN 256
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F+++ P + N+++ GY N EA + EMI + + D S + A +
Sbjct: 241 RFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQV 300
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+ + L K D+F++ LI+MY+ C W +
Sbjct: 301 GSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMI 360
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EAI ++ M+ V PN T + +LTA + ++ + + + G
Sbjct: 361 MGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 420
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H + + ++D + ++++A+D + M
Sbjct: 421 PHHQHYSCVVDLLGRAGYLNQAYDFIMSM 449
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 58/268 (21%)
Query: 53 MRELKQIHAQMLRTSLFFDPCADY--------------------HVRLVFSQISNPTIYT 92
MR L+Q+HA +L L P + + + R VF+QI +P I++
Sbjct: 1 MRVLRQLHAHILTRPL---PLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFS 57
Query: 93 CNSIVRGYTN-KNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYV---EKQLHSQ 147
NS+++GY+ L E + ++ G +P+ F + K+CA + Q+HS
Sbjct: 58 WNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSH 117
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEA 179
+K G S F+ +L+N Y C W + DEA
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F M+ ++P+A+TLV+V++A A A L +H +++ + +EL T L+D
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDM 237
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
Y KC + RA +FV M P + W+
Sbjct: 238 YAKCGCIERAKQVFVHM--PVKDTTAWS 263
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 105/272 (38%), Gaps = 44/272 (16%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLR----------TSL--FFDPCADYH-VRL 80
+ + + F L + + E Q+H+ +L+ TSL F+ C + R
Sbjct: 89 VPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARK 148
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + +++ G+ EA + EM G+ PD S+ +CA
Sbjct: 149 VFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGA 208
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + LH+ K+ + +D L L++MY+ C C+++
Sbjct: 209 LDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMG 268
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+AI F +M V P+ VT + VL+A A + +R + E G
Sbjct: 269 FAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPS 328
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
VE +D C+ V A+ + M P N
Sbjct: 329 VEHYGCKVDLLCRSGLVEEAYRITTTMKIPPN 360
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKR 216
F N+LI YS L + E I +F ++ E PN+ TL VL A A +
Sbjct: 56 FSWNSLIKGYSQIHTLSK--EPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQ 113
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
VH V + GF S + ++T+L++ Y KC+ + A +F +M P N W +A +
Sbjct: 114 VHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEM--PVRNLVAW--TAMISGHA 169
Query: 277 LVGRHSTAHQI 287
VG A ++
Sbjct: 170 RVGAVDEAMEL 180
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 83/295 (28%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP---------CA------DYHVRLVFSQISNPTIYTCN 94
C+TMR+L+Q HA ++++ + CA DY LVF Q+ NP +++ N
Sbjct: 34 CTTMRDLQQFHAHLIKSGQAIESFAASRILAFCASPLGNMDY-AYLVFLQMQNPNLFSWN 92
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYVE---KQLHSQAIK 150
+++RG++ + A + +M+V + P R +PS+FK+ + + + QLH + IK
Sbjct: 93 TVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIK 152
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
GL D F+ NT++ MY++ L + DE+ K+
Sbjct: 153 LGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKL 212
Query: 183 FYRMEIEN-------------------------------VKPNAVTLVNVLTARARARDL 211
F +M ++N ++P+ T+V++L A A+ L
Sbjct: 213 FDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGAL 272
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
R +H+ + ++ + + T ++D YCKC + A +F K+ L WN+
Sbjct: 273 RQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNS 327
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 34/212 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCAD 137
R +F QI +PT + NS++R A Y M+ G P+ F K+CA
Sbjct: 80 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WC- 172
+ +QLH+QA++ GLA+ +++ L+N+Y+ C W
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198
Query: 173 -------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ +EA+ +F M+ V+P+ VT+V+V++A A+A L K VH +D G
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 258
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+EL T L+D Y KC + RA +F M+
Sbjct: 259 ITVDLELSTALIDMYAKCGLIERARGVFDAMV 290
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 48/259 (18%)
Query: 46 SLEKCSTM---RELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQIS-NP 88
+L+ C+ + E +Q+HAQ LR L + C + R VF ++ +
Sbjct: 132 ALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDK 191
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ +++V GY+ + +EA + EM G+ PD S+ +CA + + K +H
Sbjct: 192 NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVH 251
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+ + G+ D L LI+MY+ C +++ +
Sbjct: 252 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 311
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F RM V+PN VT + VL+A A + + +R + G +E ++
Sbjct: 312 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMV 371
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D C+ + A+ + M
Sbjct: 372 DLLCRSGLLDDAYSFVIGM 390
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 34/212 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCAD 137
R +F QI +PT + NS++R A Y M+ G P+ F K+CA
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WC- 172
+ +QLH+QA++ GLA+ +++ L+N+Y+ C W
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247
Query: 173 -------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ +EA+ +F M+ V+P+ VT+V+V++A A+A L K VH +D G
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 307
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+EL T L+D Y KC + RA +F M+
Sbjct: 308 ITVDLELSTALIDMYAKCGLIERARGVFDAMV 339
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 48/259 (18%)
Query: 46 SLEKCSTM---RELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQIS-NP 88
+L+ C+ + E +Q+HAQ LR L + C + R VF ++ +
Sbjct: 181 ALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDK 240
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ +++V GY+ + +EA + EM G+ PD S+ +CA + + K +H
Sbjct: 241 NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVH 300
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+ + G+ D L LI+MY+ C +++ +
Sbjct: 301 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 360
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F RM V+PN VT + VL+A A + + +R + G +E ++
Sbjct: 361 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMV 420
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D C+ + A+ + M
Sbjct: 421 DLLCRSGLLDDAYSFVIGM 439
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF ++ + + N++V G + HHEA F +M +G PD F + +F
Sbjct: 123 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAE 182
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
CAD+ ++H A + G SD F+ ++LI+MY++C D
Sbjct: 183 CADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSL 242
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA+ IF RM V+P VT +++ LR K++H V GF
Sbjct: 243 LAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGF 302
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+V + ++L+D YCKC +S A +F KM P
Sbjct: 303 EDNVFISSSLIDMYCKCGEISIAHCIFDKMSSP 335
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 32/161 (19%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
DY V+ VF + NS++ G EA + M+ G+ P F SL
Sbjct: 222 DYSVK-VFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPV 280
Query: 135 C---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW------C----LDQPD---- 177
C A + KQLH+ I G + F+ ++LI+MY C C + PD
Sbjct: 281 CGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSW 340
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F RME+ N KPN +T + VLTA
Sbjct: 341 TAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTA 381
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 121/268 (45%), Gaps = 38/268 (14%)
Query: 50 CSTMRELKQIHAQMLRTSLF----FDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNL 105
C ++ KQ LRT L P + + R VFS+I +P N+I+R ++
Sbjct: 9 CYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFP 68
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
H F F+ M G+ D F FP + K+C+ + + LHS +K+GL SD F+ N LI
Sbjct: 69 SHSLFYFF-SMRSNGIPLDNFTFPFVLKACSRLQINLHLHSLIVKYGLDSDIFVQNALIC 127
Query: 166 MYSSCWCLDQ----------------------------PDEAIKIFYRMEIEN-VKPNAV 196
+Y C L+ EA+ +F +M++E+ V P+ V
Sbjct: 128 VYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEV 187
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T+++V++A + DL + V + G V L T L+D + +C + + +F KM
Sbjct: 188 TMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKM 247
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
N W +A + G+ GR + A
Sbjct: 248 AV--RNVLTW--TALINGLGVHGRSTEA 271
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 141/317 (44%), Gaps = 92/317 (29%)
Query: 47 LEKCSTMRELKQIHAQMLR----------------TSLFFDPCADYHVRLVFSQISNPTI 90
L+KC +M ELK++HA + ++L DY R VFSQIS+PTI
Sbjct: 21 LDKCKSMLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYR-VFSQISSPTI 79
Query: 91 YTCNSIVRGYTN-KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHS 146
++ N I+RGY+N KN H +F +M+ G+ PD +P L K+ A + +K +H+
Sbjct: 80 FSWNIIIRGYSNSKNPIHSLSIFL-KMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHA 138
Query: 147 QAIKFGLASDSFLHNTLINMYSSC----WC------------------LD------QPDE 178
Q IK G SD F+ N+LI+MY+SC W LD +
Sbjct: 139 QIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAM 198
Query: 179 AIKIFYRMEIENV-------------------------------KPNAVTLVNVLTARAR 207
A K+F M+ +V K N VT+V+VL+A A
Sbjct: 199 AQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAH 258
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM------LFPWN 261
L+ + +H+ + ++ + L+T+L+D Y KC + A +F + +F WN
Sbjct: 259 LGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWN 318
Query: 262 NYGQWAMSATVGPQGLV 278
AM + GLV
Sbjct: 319 -----AMIGGLATHGLV 330
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 58/268 (21%)
Query: 53 MRELKQIHAQMLRTSLFFDPCADY--------------------HVRLVFSQISNPTIYT 92
MR L+Q+HA +L L P + + + R VF+QI +P I++
Sbjct: 1 MRVLRQLHAHILTRPL---PLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFS 57
Query: 93 CNSIVRGYTN-KNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYV---EKQLHSQ 147
NS+++GY+ L E + ++ G +P+ F + K+CA + Q+HS
Sbjct: 58 WNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSH 117
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEA 179
+K G S F+ +L+N Y C W + DEA
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F M+ ++P+A+TLV+V++A A A L +H +++ + +EL T L+D
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 237
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
Y KC + RA +FV M P + W+
Sbjct: 238 YAKCGCIERAKQVFVHM--PVKDTTAWS 263
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKR 216
F N+LI YS L + E I +F ++ E PN+ TL VL A A +
Sbjct: 56 FSWNSLIKGYSQIHTLSK--EPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQ 113
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
VH V + GF S + ++T+L++ Y KC+ + A +F +M P N W +A +
Sbjct: 114 VHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEM--PVRNLVAW--TAMISGHA 169
Query: 277 LVGRHSTAHQI 287
VG A ++
Sbjct: 170 RVGAVDEAMEL 180
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 36/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCA--- 136
VF+ + T NS++R + N N+ A Y EM+ + +PDRF FPSL K CA
Sbjct: 34 VFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
+ V K LH Q +K+ L SD ++ TL+NMY++C L
Sbjct: 94 EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 176 -------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
P+EA+ ++ +ME + P+ VT+ +++A A +DL ++H + E
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L + L++ Y KC + A +F ++ ++ W+
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWS 250
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 58/291 (19%)
Query: 47 LEKCSTMRELK-------QIHAQMLRTSLFFD--------PCADYH-VRLVFSQISNPTI 90
L+ C+ + E K Q+ ML + L+ + C D R +F ++ +
Sbjct: 86 LKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNK 145
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
S++ GY + +EA L Y +M G PD +L +CA D+ V +LHS
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
+ + + L + L+NMY+ C L ++ EA
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEA 265
Query: 180 IKIFYRME-IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+++F + N++PN VT++ V++A A+ DL T + VH + + V L +L+D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325
Query: 239 AYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAH 285
+ KC + A +F M L WN +M + GL GR + A
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWN-----SMVNGLALHGL-GREALAQ 370
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 82/296 (27%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCN 94
+CSTMRELKQIHA +++T L D P + LVF++I++ + N
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWN 93
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
+I+RG++ + A + +M+ + P R +PS+FK+ + + QLH I
Sbjct: 94 TIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVI 153
Query: 150 KFGLASDSFLHNTLINMY-------------------------------SSCWCLDQPD- 177
K GL DSF+ NT+++MY + C +DQ
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQN 213
Query: 178 ---------------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
+A+ +F M+ ++VKP+ T+V++L A A
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGA 273
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
+ +H+ + + F + + T L+D YCKC + ++F K L WN+
Sbjct: 274 SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNS 329
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 120/268 (44%), Gaps = 38/268 (14%)
Query: 50 CSTMRELKQIHAQMLRTSLF----FDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNL 105
C ++ KQ LRT L P + + R VFS+I +P N+I+R ++
Sbjct: 9 CYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFP 68
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
H F+ M G+ D F FP + K+C+ + + LHS +K+GL SD F+ N LI
Sbjct: 69 SHSLSYFF-SMRSNGIPLDNFTFPFVLKACSRLQINLHLHSLIVKYGLGSDIFVQNALIC 127
Query: 166 MYSSCWCLDQ----------------------------PDEAIKIFYRMEIEN-VKPNAV 196
+Y C L+ EA+ +F +M++E+ V P+ V
Sbjct: 128 VYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEV 187
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T+++V++A + DL + V + GF V L T L+D + +C + + +F KM
Sbjct: 188 TMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKM 247
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
N W +A + G+ GR A
Sbjct: 248 AV--RNVLTW--TALINGLGIHGRSMEA 271
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 49/259 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYT----------- 92
L S+ +C T+R LKQIHA ++ + L D V F + Y
Sbjct: 9 LNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHV 68
Query: 93 ----CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
N+++ Y + AFL Y ++ G +PD + FP + K+C + +Q+H
Sbjct: 69 GTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVH 128
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC--W-----CLDQP---------------------D 177
A+K G D ++ N+L++ YS C W D+ D
Sbjct: 129 GVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFD 188
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +F +M+ V PN T V+VL A R L K VH V + F + + L+
Sbjct: 189 EAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALV 245
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC+ + A LF ++
Sbjct: 246 DMYVKCECLCEARKLFDEL 264
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 55/307 (17%)
Query: 7 LHHQTRTPALSSDNSP----LINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQ 62
L + T A +S +P L+ + N + Y L + K ++E +Q+H
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 63 MLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
++ F+ C + VF ++ + + ++ GY L EA
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+ +M V +P+ F S+ +C + + K +H K + N L++M
Sbjct: 191 INLFLKMDV---VPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDM 247
Query: 167 YSSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVTL 198
Y C CL QP +++++FY M+I V+P+ + L
Sbjct: 248 YVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIIL 307
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
+VL+A A L + V + ++ G + + T L+D Y KC + A +F +
Sbjct: 308 TSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPN 367
Query: 257 --LFPWN 261
+F WN
Sbjct: 368 RNIFTWN 374
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 45/258 (17%)
Query: 49 KCSTMRELKQIHAQMLRTSL----FFDP----CADY-HVRLVFSQISNPTIYTCNSIVRG 99
+C + + ++QIHAQM+ SL F P D+ + L+F+Q+ NP Y N ++RG
Sbjct: 41 QCRSKKPMQQIHAQMIINSLSKPNFLLPRIIDLKDFAYASLLFTQMPNPNDYAFNVMIRG 100
Query: 100 YTNKNLHHE-AFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLAS 155
T ++ A Y++M GL P+ F FP LF SCA+ ++ + HS +K G +
Sbjct: 101 LTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGFNN 160
Query: 156 DSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRME 187
DS ++++LI MY+ C LD EA+++F M
Sbjct: 161 DSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFMEMR 220
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+ +P +TLV++L A DL K V + + + + L+D Y KC +
Sbjct: 221 EQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGKCGDLM 280
Query: 248 RAWDLFVKM----LFPWN 261
A +F M + WN
Sbjct: 281 SARRVFDNMAEKDIVTWN 298
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 93/241 (38%), Gaps = 43/241 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF +I I + NS++ GYT EA + EM QG P S+ +C D+
Sbjct: 182 RKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDL 241
Query: 139 -------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
+VE + + ++ +S+ + LI+MY C L
Sbjct: 242 GDLALGKWVEALIGDKKMEL----NSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTW 297
Query: 174 ----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
DEA+ +F M + PN +T+V VL+A A L K V +
Sbjct: 298 NAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQ 357
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
G V + + L+D Y KC + A +F M P N W +A + GR
Sbjct: 358 RGLQHDVYVASALVDMYAKCGSLDNALRVFENM--PHKNEVSW--NAMISALAFHGRARE 413
Query: 284 A 284
A
Sbjct: 414 A 414
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 48/264 (18%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV--------------RLVFSQIS 86
+F L L+ S R QI + + + +F DP + R +F QI
Sbjct: 29 NFSLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIH 88
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQ 143
P +++ N + R Y+ + E Y+ M+ G +PD + FP + K+CA + + ++
Sbjct: 89 KPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGRE 148
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+HS +K G+ D F+ N LI+ +SSC ++
Sbjct: 149 IHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQS 208
Query: 177 ---DEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ A+K+F+ + + + P+ VTLV+ L+ R L K++H SGF V +
Sbjct: 209 HRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFV 268
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
++L+D Y KC + A +F ++
Sbjct: 269 GSSLIDMYSKCGQIEDARKVFDRI 292
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 110/284 (38%), Gaps = 51/284 (17%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADY 76
+ N + Y F L + + S + + ++IH+ L+ + D C
Sbjct: 119 LRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAV 178
Query: 77 HV-RLVFSQISNPT--IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLF 132
R VF + + + NS++ GY + + A + E++ G L PD S
Sbjct: 179 EAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSAL 238
Query: 133 KSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
C + + K++H G D F+ ++LI+MYS C ++
Sbjct: 239 SVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTV 298
Query: 175 ----------QPD---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
Q D EAI++F M+I +A T+ VL+A L + +H
Sbjct: 299 CWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYC 358
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + + + L+ Y KC + +A ++F + +F W+
Sbjct: 359 ERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWS 402
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 81/282 (28%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA-----------------DYHVRLVFSQISNPTI 90
E CS M +LKQ+HA LRT+ +P +Y R VF I N +
Sbjct: 37 ETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFR-VFDSIENHSS 95
Query: 91 YTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY---VEKQLH 145
+ N+++R + + EAF+ Y +M+ +G PD+ FP + K+CA I+ KQ+H
Sbjct: 96 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVH 155
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
Q +K G + D +++N LI+ Y SC CLD + D
Sbjct: 156 CQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYD 215
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL----- 232
A+++F M+ ++ +P+ T+ +VL+A A L G WSHV L
Sbjct: 216 SALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGSLSL-----------GTWSHVFLLRNCD 263
Query: 233 ---------KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K +L++ YCKC + A +F M L WN
Sbjct: 264 VDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWN 305
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF +++ + + NSI+ GY + L + + +M+V G+ D S+F CAD
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
I + + +HS +K + + NTL++MYS C LD
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+K+F ME E + P+ T+ VL AR R L KRVH+ + E+
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + LMD Y KC + A +F VK + WN
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D + VF ++S+ ++ + S++ GY + L EA + EM +G+ PD +
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 128 FPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
++ CA + K++H + L D F+ N L++MY+ C + EA +F
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ---EAELVFS 456
Query: 185 RMEIENV---------------KPNAVTLVNVLTARAR-ARDLRTV-------------- 214
M ++++ A++L N+L R + D RTV
Sbjct: 457 EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFD 516
Query: 215 --KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAM 268
+ +H + +G++S + +L+D Y KC + A LF K L W M
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT-----VM 571
Query: 269 SATVGPQGLVGRHSTA 284
A G G G+ + A
Sbjct: 572 IAGYGMHGF-GKEAIA 586
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYT----------- 92
L S+ +C T+R LKQIHA ++ + L D V F + Y
Sbjct: 9 LNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHV 68
Query: 93 ----CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
N+++ Y + AFL Y ++ G +PD + FP + K+C + +Q+H
Sbjct: 69 GTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVH 128
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC--W-----CLDQP---------------------D 177
A+K G D ++ N+L++ YS C W D+ D
Sbjct: 129 GVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFD 188
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +F +M+ V PN T V+VL A R L K VH V + F + + L+
Sbjct: 189 EAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALV 245
Query: 238 DAYCKCKFVSRAWDLF 253
D Y KC+ + A LF
Sbjct: 246 DMYVKCECLCEARKLF 261
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 55/307 (17%)
Query: 7 LHHQTRTPALSSDNSP----LINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQ 62
L + T A +S +P L+ + N + Y L + K ++E +Q+H
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 63 MLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
++ F+ C + VF ++ + + ++ GY L EA
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+ +M V +P+ F S+ +C + + K +H K + N L++M
Sbjct: 191 INLFLKMDV---VPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDM 247
Query: 167 YSSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVTL 198
Y C CL QP +++++FY M+I V+P+ + L
Sbjct: 248 YVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIIL 307
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
+VL+A A L + V + ++ G + + T L+D Y KC + A +F +
Sbjct: 308 TSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPN 367
Query: 257 --LFPWN 261
+F WN
Sbjct: 368 RNIFTWN 374
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP-------------CADYHVRLVFSQISNPTI--Y 91
+ KC+ +R KQIHA +L ++L + D H F + + ++ +
Sbjct: 16 IHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDWSLSSF 75
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
CN ++ GY + L A L Y + G +PD + FP++ KSCA I +Q HS +
Sbjct: 76 PCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVS 135
Query: 149 IKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEAI 180
+K GL D ++ NTL+++YS C W +EAI
Sbjct: 136 VKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAI 195
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F RM NV+PN T V++L A + L K +H V + + + + ++D Y
Sbjct: 196 SLFLRM---NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMY 252
Query: 241 CKCKFVSRAWDLFVKM 256
KC V+ A +F +M
Sbjct: 253 MKCDSVTDARKMFDEM 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 109/283 (38%), Gaps = 51/283 (18%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CAD- 75
+ N + Y L S K S + E++Q H+ ++T L+ D C D
Sbjct: 101 VRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDN 160
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
VF + + + ++ GY L +EA + M V+ P+ F S+ +C
Sbjct: 161 VGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVE---PNVGTFVSILGAC 217
Query: 136 ADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC 172
+ + K +H K + + N +++MY C W
Sbjct: 218 GKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWT 277
Query: 173 --------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
P E++ +F +M+ +P+ V L +VL+A A L + VH+ +D
Sbjct: 278 SMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCH 337
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY 263
V + TTL+D Y KC + A +F M + WN Y
Sbjct: 338 RIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAY 380
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 55/272 (20%)
Query: 53 MRELKQIHAQMLR-----TSLFFDPCA-------------DYHVRLVFSQISNPTIYTCN 94
MR L+QIHA++L +S+ F C DY R +FSQI P I++ N
Sbjct: 1 MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDY-ARKLFSQIQRPNIFSWN 59
Query: 95 SIVRGYT-NKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYV---EKQLHSQAI 149
S++RG + ++ E + + +M+ +G P+ F + K+C+ + +Q+H+ +
Sbjct: 60 SMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVL 119
Query: 150 KFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIK 181
K G S F+ L+N Y+ C W + +EA+
Sbjct: 120 KSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 179
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M+ V P+ VT+V+V++A A + L T K VH +++ + +EL T L++ Y
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYA 239
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273
KC + RA ++F M P + W+ S VG
Sbjct: 240 KCGCIERAKEVFDAM--PVKDTKAWS-SMIVG 268
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 44/259 (16%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
F L + S + E +Q+HA +L++ F+ C D + VF +I++
Sbjct: 97 FVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDR 156
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ ++++ GY L +EA + +M G++PD S+ +CA + K +H
Sbjct: 157 NLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVH 216
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE--------------------------- 178
+ K + +D L L+NMY+ C C+++ E
Sbjct: 217 AYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAE 276
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A++ F+RME VKPN VT + VL+A A + + +R + E G +EL ++
Sbjct: 277 DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMV 336
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D C+ V A L M
Sbjct: 337 DLLCRASLVEDACTLVETM 355
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 35/231 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD-------YHVRLVFSQISN 87
LV LE CS R+LK IHA MLRT LFFD C D Y +R V SQI N
Sbjct: 21 LVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIR-VASQIQN 79
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQL 144
P ++ N+++RG + +F +Y + + GL+PD P L K+CA + + Q
Sbjct: 80 PNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQT 139
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
H QAIK G D ++ N+L++MY+S + + A +F RM + + V+ ++
Sbjct: 140 HGQAIKHGFEQDFYVQNSLVHMYAS---VGDINAARSVFQRM----CRFDVVSWTCMIAG 192
Query: 205 RARARDLRTVKRVHKCVDESGF--WSHVELKTTLMDAYCKCKFVSRAWDLF 253
R D ++ + + + E WS T++ Y + +A + F
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWS------TMISGYARNNCFEKAVETF 237
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 73 CADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C D R +F ++ + T ++++ GY N +A + + +G++ + + +
Sbjct: 196 CGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGV 255
Query: 132 FKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188
SCA + + ++ H ++ L+ + L +++MY+ C ++A+ +F ++
Sbjct: 256 ISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARC---GNVEKAVMVFEQLPE 312
Query: 189 ENV 191
++V
Sbjct: 313 KDV 315
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ C D ++L + + L + S T+I+ Y+ C ++ A++ F ++ E V
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWS----TMISGYARNNCFEK---AVETFEALQAEGV 245
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
N +V V+++ A L ++ H+ V + ++ L T ++D Y +C V +A
Sbjct: 246 VANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVM 305
Query: 252 LFVKM 256
+F ++
Sbjct: 306 VFEQL 310
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 89/304 (29%)
Query: 48 EKCSTMRELKQIHAQMLRTSLF--------------FDPCADY-HVRLVFSQISNPTIYT 92
E C++M LKQIHA L L P D + + +F Q+ +P +
Sbjct: 3 EACNSMSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFF 62
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE----------- 141
N+++RGY ++ + ++M G+ PD F F L K+ + + V
Sbjct: 63 YNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVEC 122
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYS--------------------------------- 168
++H +K G +S F+ N LI++Y+
Sbjct: 123 DEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRA 182
Query: 169 -----SCWCLDQ-PD--------------------EAIKIFYRMEIENVKPNAVTLVNVL 202
+ W DQ P+ EA++++ M + V+P+ VTLV+V+
Sbjct: 183 GELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVI 242
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LF 258
+A DL+ VH +DE+GF V L L+D Y KC + RAW +F M L
Sbjct: 243 SACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLV 302
Query: 259 PWNN 262
WN+
Sbjct: 303 TWNS 306
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF Q+ + + ++V Y+ EA Y M+ +G+ PD S+ +C
Sbjct: 189 RWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNL 248
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
D+ + +HS + G L N LI+MY+ C C+D+
Sbjct: 249 GDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMI 308
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGF 226
P++A +F RM V P+ VT + VLTA A + R+ + + + G
Sbjct: 309 SACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGI 368
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+ +E +++ + ++ A++L M P N+
Sbjct: 369 EARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSND 404
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 120/262 (45%), Gaps = 49/262 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQIS 86
C+ L+KCS M E KQ HA++L+ LF D CA DY +F Q+
Sbjct: 34 CVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACS-IFRQMD 92
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEK--Q 143
+ N+++RG+ EA + Y EM +G+ PD F +P+L K+CA + VE+ Q
Sbjct: 93 ELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQ 152
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQ 175
+H+ +K GL +D F+ N+LI+MY C W L
Sbjct: 153 VHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGM 212
Query: 176 PDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
+ +++ M E + LV+VL+A L + VH + + +V ++T
Sbjct: 213 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVET 272
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
+L++ Y KC + + LF KM
Sbjct: 273 SLIEMYLKCGSLYKGMCLFQKM 294
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF +++ + + NSI+ GY + L + + +M+V G+ D S+F CAD
Sbjct: 98 ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCAD 157
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------- 175
I + + +HS +K + + NTL++MYS C LD
Sbjct: 158 SRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSM 217
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+K+F ME E + P+ T+ VL AR R L KRVH+ + E+
Sbjct: 218 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL 277
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + LMD Y KC + A +F VK + WN
Sbjct: 278 GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 316
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 49/255 (19%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D + VF ++S+ ++ + S++ GY + L EA + EM +G+ PD +
Sbjct: 190 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 249
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
++ CA + K++H + L D F+ N L++MY+ C + EA +F
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ---EAELVFSE 306
Query: 186 MEIENV---------------KPNAVTLVNVLTARAR-ARDLRTV--------------- 214
M ++++ A++L N+L R + D RTV
Sbjct: 307 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 366
Query: 215 -KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMS 269
+ +H + +G++S + +L+D Y KC + A LF K L W M
Sbjct: 367 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT-----VMI 421
Query: 270 ATVGPQGLVGRHSTA 284
A G G G+ + A
Sbjct: 422 AGYGMHGF-GKEAIA 435
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 133/316 (42%), Gaps = 59/316 (18%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCS---TMRELK 57
+A +P ++ + N P ++I + Q Q + L C+ ++RE K
Sbjct: 83 LAVSVPSQTAKKSKIVVGRNRP----ESIGISETYQQTQVQDLIDVLRDCAEKGSIREAK 138
Query: 58 QIHAQMLRTS--------LF------FDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTN 102
+H +L+++ LF + C+++ VF ++ +++ ++ G T
Sbjct: 139 AVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTE 198
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFL 159
L + F F+ EM+ G++PD+F + ++ +SC + + K +H+Q + G A+ F+
Sbjct: 199 HGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFV 258
Query: 160 HNTLINMYS-------SCWCLDQPDE---------------------AIKIFYRMEIENV 191
+L+NMY+ S W + E A +F RM+
Sbjct: 259 STSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGAC 318
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
PN TLV+V A + D+ K V C E G +V + T L+D Y KC + A
Sbjct: 319 TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARS 378
Query: 252 LFVKMLF------PWN 261
+F PWN
Sbjct: 379 VFDTNFINCGVNTPWN 394
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 31/158 (19%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
VR VF ++ I + ++V Y+ +L EA + M +G P++F F S+ SCA
Sbjct: 480 VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCAS 539
Query: 138 I-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------- 177
+ ++E +Q+H K GL ++ + + LI+MY+ C + + PD
Sbjct: 540 LCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAI 599
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++F RME+ +K NAVTL+ VL A
Sbjct: 600 ISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFA 637
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 36/238 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ ++ + N+++ G T+ LH EAF + M P+ + S+ K+ D
Sbjct: 278 VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVD 337
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + K++ + A + G+ + + LI+MYS C L
Sbjct: 338 VNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMI 397
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF- 226
EA++++ +M + + T +V A A ++ L+ + VH V + G
Sbjct: 398 SGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLD 457
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
V + + DAY KC F+ +F +M + W T Q +G + A
Sbjct: 458 LMVVSVNNAIADAYSKCGFLEDVRKVFDRM--EERDIVSWTTLVTAYSQSSLGEEALA 513
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 32/198 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N+++ GY+ EA Y +M G+ D + + S+F + A + + +H +K
Sbjct: 394 NAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLK 453
Query: 151 FGLASDSF-LHNTLINMYSSCWCLDQ----------------------------PDEAIK 181
GL ++N + + YS C L+ +EA+
Sbjct: 454 CGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALA 513
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M E PN T +VL + A L ++VH + ++G + +++ L+D Y
Sbjct: 514 TFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYA 573
Query: 242 KCKFVSRAWDLFVKMLFP 259
KC ++ A +F K+ P
Sbjct: 574 KCGSITEAGKVFDKISNP 591
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 131/316 (41%), Gaps = 59/316 (18%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCS---TMRELK 57
+A +P ++ + N P ++I + Q Q + L C+ ++RE K
Sbjct: 29 LAVSVPSQTAKKSKIVVGRNRP----ESIGISETYQQTQVQDLIDVLRDCAEKGSIREAK 84
Query: 58 QIHAQMLRTSL--------------FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTN 102
+H +L+++ + C+++ VF ++ +++ ++ G T
Sbjct: 85 AVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTE 144
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFL 159
L + F F+ EM+ G++PD+F + ++ +SC + + K +H+Q + G A+ F+
Sbjct: 145 HGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFV 204
Query: 160 HNTLINMYS-------SCWCLDQPDE---------------------AIKIFYRMEIENV 191
+L+NMY+ S W + E A +F RM+
Sbjct: 205 STSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGAC 264
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
PN TLV+V A + D+ K V C E G +V + T L+D Y KC + A
Sbjct: 265 TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARS 324
Query: 252 LFVKMLF------PWN 261
+F PWN
Sbjct: 325 VFDTNFINCGVNTPWN 340
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 31/158 (19%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
VR VF ++ I + ++V Y+ +L EA + M +G P++F F S+ SCA
Sbjct: 426 VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCAS 485
Query: 138 I-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------- 177
+ ++E +Q+H K GL ++ + + LI+MY+ C + + PD
Sbjct: 486 LCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAI 545
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++F RME+ +K NAVTL+ VL A
Sbjct: 546 ISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFA 583
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 36/238 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ ++ + N+++ G T+ LH EAF + M P+ + S+ K+ D
Sbjct: 224 VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVD 283
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + K++ + A + G+ + + LI+MYS C L
Sbjct: 284 VNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMI 343
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF- 226
EA++++ +M + + T +V A A ++ L+ + VH V + G
Sbjct: 344 SGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLD 403
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
V + + DAY KC F+ +F +M + W T Q +G + A
Sbjct: 404 LMVVSVNNAIADAYSKCGFLEDVRKVFDRM--EERDIVSWTTLVTAYSQSSLGEEALA 459
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 32/198 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N+++ GY+ EA Y +M G+ D + + S+F + A + + +H +K
Sbjct: 340 NAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLK 399
Query: 151 FGLASDSF-LHNTLINMYSSCWCLDQ----------------------------PDEAIK 181
GL ++N + + YS C L+ +EA+
Sbjct: 400 CGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALA 459
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M E PN T +VL + A L ++VH + ++G + +++ L+D Y
Sbjct: 460 TFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYA 519
Query: 242 KCKFVSRAWDLFVKMLFP 259
KC ++ A +F K+ P
Sbjct: 520 KCGSITEAGKVFDKISNP 537
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 51/273 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQML----------RTSLFFDPCA------D 75
+I++ Y ++ + C T + KQ+H+Q + + LF C+
Sbjct: 28 ESISNDYSRFISILGV--CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS 85
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP----SL 131
Y +L F +I P + N++++G++ + E Y M+ +G+ PD FP L
Sbjct: 86 YAYKL-FVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGL 144
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------- 174
+ + K+LH +KFGL S+ ++ N L+ MYS C +D
Sbjct: 145 KRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSW 204
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+ +E+I++ ME V P +VTL+ VL+A ++ +D KRVH+ V E
Sbjct: 205 NLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE 264
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+ L++AY C + A +F M
Sbjct: 265 CKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R F Q+ + ++ GY +E+ + EM G+IPD F S+ +CA
Sbjct: 322 RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL 381
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------- 177
+ + + + + K + +D + N LI+MY C C +DQ D
Sbjct: 382 GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMV 441
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F++M+ +++P+ +T + VL+A
Sbjct: 442 VGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D +I+ Y C + E+++IF M+ + P+ T+V+VLTA A L +
Sbjct: 332 DRISWTIMIDGYLRAGCFN---ESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGE 388
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +D++ + V + L+D Y KC +A +F M
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDM 429
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 50/257 (19%)
Query: 51 STMRELKQIHAQMLRTS------------LFF-----DPCADYHVRLVFSQISNP-TIYT 92
S++ +L+QIHA +R +F+ P + VFS+I P ++
Sbjct: 28 SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYVEKQLHSQA 148
N+++RGY AF Y EM V GL+ PD +P L K+ AD+ + + +HS
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAI 180
I+ G S ++ N+L+++Y++C + +P+EA+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ M + +KP+ T+V++L+A A+ L KRVH + + G ++ L+D Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267
Query: 241 CKCKFVSRAWDLFVKML 257
+C V A LF +M+
Sbjct: 268 ARCGRVEEAKTLFDEMV 284
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL----FFDPCA----DY-HVRLVFSQISNPTIYTCN 94
L L+KC ++ +L+QI AQML S+ F P A D+ + +FS P Y+ N
Sbjct: 37 LFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFN 96
Query: 95 SIVRGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
++RG TN N H A Y M GL PD+F + +F +CA +I V + +HS K
Sbjct: 97 YMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFK 156
Query: 151 FGLASDSFLHNTLINMYSSCW-------CLDQPDE---------------------AIKI 182
GL D ++++LI MY+ C D+ E A+ +
Sbjct: 157 VGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDL 216
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +ME E +P+ TLV++L A + DLRT + + + L + L+ Y K
Sbjct: 217 FRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 276
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
C + A +F +M+ + W TV Q G+ S A ++
Sbjct: 277 CGDLDSARRVFNQMI--KKDRVAWTAMITVYSQN--GKSSEAFKL 317
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 110/285 (38%), Gaps = 47/285 (16%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFS 83
++ +F ++ K + + +H+ + + L + C + R +F
Sbjct: 128 KFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFD 187
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYV 140
+I+ + NS++ GY+ +A + +M +G PD S+ +C D+
Sbjct: 188 EITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT 247
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------- 174
+ L AI + +FL + LI+MY C LD
Sbjct: 248 GRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 307
Query: 175 --QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ EA K+F+ ME V P+A TL VL+A L K++ E ++ +
Sbjct: 308 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 367
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
T L+D Y KC V A +F M P N W AM QG
Sbjct: 368 ATGLVDMYGKCGRVEEALRVFEAM--PVKNEATWNAMITAYAHQG 410
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL----FFDPCA----DY-HVRLVFSQISNPTIYTCN 94
L L+KC ++ +L+QI AQML S+ F P A D+ + +FS P Y+ N
Sbjct: 41 LFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFN 100
Query: 95 SIVRGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
++RG TN N H A Y M GL PD+F + +F +CA +I V + +HS K
Sbjct: 101 YMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFK 160
Query: 151 FGLASDSFLHNTLINMYSSCW-------CLDQPDE---------------------AIKI 182
GL D ++++LI MY+ C D+ E A+ +
Sbjct: 161 VGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDL 220
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +ME E +P+ TLV++L A + DLRT + + + L + L+ Y K
Sbjct: 221 FRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 280
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
C + A +F +M+ + W TV Q G+ S A ++
Sbjct: 281 CGDLDSARRVFNQMI--KKDRVAWTAMITVYSQN--GKSSEAFKL 321
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 110/285 (38%), Gaps = 47/285 (16%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFS 83
++ +F ++ K + + +H+ + + L + C + R +F
Sbjct: 132 KFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFD 191
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYV 140
+I+ + NS++ GY+ +A + +M +G PD S+ +C D+
Sbjct: 192 EITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT 251
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------- 174
+ L AI + +FL + LI+MY C LD
Sbjct: 252 GRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 311
Query: 175 --QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ EA K+F+ ME V P+A TL VL+A L K++ E ++ +
Sbjct: 312 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 371
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
T L+D Y KC V A +F M P N W AM QG
Sbjct: 372 ATGLVDMYGKCGRVEEALRVFEAM--PVKNEATWNAMITAYAHQG 414
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 63/273 (23%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA-----------------DYHVRLVFSQISNPTI 90
E CS M +LKQ+HA LRT+ +P +Y R VF I N +
Sbjct: 56 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR-VFDSIENHSS 114
Query: 91 YTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY---VEKQLH 145
+ N+++R + + EAF+ Y +M+ +G PD+ FP + K+CA I+ KQ+H
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 174
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
Q +K G D +++N LI++Y SC CLD + D
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 234
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KCVDESGFWSHVEL 232
A+++F M+ + +P+ T+ +VL+A A L H KC + V +
Sbjct: 235 SALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC--DVDVAMDVLV 291
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K +L++ YCKC + A +F M L WN
Sbjct: 292 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 324
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 63/273 (23%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA-----------------DYHVRLVFSQISNPTI 90
E CS M +LKQ+HA LRT+ +P +Y R VF I N +
Sbjct: 47 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR-VFDSIENHSS 105
Query: 91 YTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY---VEKQLH 145
+ N+++R + + EAF+ Y +M+ +G PD+ FP + K+CA I+ KQ+H
Sbjct: 106 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 165
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
Q +K G D +++N LI++Y SC CLD + D
Sbjct: 166 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 225
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KCVDESGFWSHVEL 232
A+++F M+ + +P+ T+ +VL+A A L H KC + V +
Sbjct: 226 SALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC--DVDVAMDVLV 282
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K +L++ YCKC + A +F M L WN
Sbjct: 283 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 315
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 51/273 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQML----------RTSLFFDPCA------D 75
+I++ Y ++ + C T + KQ+H+Q + + LF C+
Sbjct: 28 ESISNDYSRFISILGV--CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS 85
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF--- 132
Y +L F +I P + N++++G++ + E Y M+ +G+ PD FP L
Sbjct: 86 YAYKL-FVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGL 144
Query: 133 -KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------- 174
+ + K+LH +KFGL S+ ++ N L+ MYS C +D
Sbjct: 145 KRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSW 204
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+ +E+I++ ME V P +VTL+ VL+A ++ +D KRVH+ V E
Sbjct: 205 NLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE 264
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+ L++AY C + A +F M
Sbjct: 265 CKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R F Q+ + ++ GY +E+ + EM G+IPD F S+ +CA
Sbjct: 322 RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL 381
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------- 177
+ + + + + K + +D + N LI+MY C C +DQ D
Sbjct: 382 GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMV 441
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F++M+ +++P+ +T + VL+A
Sbjct: 442 VGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D +I+ Y C + E+++IF M+ + P+ T+V+VLTA A L +
Sbjct: 332 DRISWTIMIDGYLRAGCFN---ESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGE 388
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +D++ + V + L+D Y KC +A +F M
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDM 429
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 124/274 (45%), Gaps = 63/274 (22%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA-----------------DYHVRLVFSQISNPT 89
L+ CS M +LKQ+HA LRT+ +P +Y R VF I N +
Sbjct: 32 LQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR-VFDSIENHS 90
Query: 90 IYTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY---VEKQL 144
+ N+++R + + EAF+ Y +M+ +G PD+ FP + K+CA I+ KQ+
Sbjct: 91 SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 150
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QP 176
H Q +K G D +++N LI++Y SC CLD +
Sbjct: 151 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 210
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KCVDESGFWSHVE 231
D A+++F M+ + +P+ T+ +VL+A A L H KC + V
Sbjct: 211 DSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC--DVDVAMDVL 267
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+K +L++ YCKC + A +F M L WN
Sbjct: 268 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 301
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 47/269 (17%)
Query: 53 MRELKQIHAQM----------LRTSLFFDPCAD---YHVRLVFSQISNPTIYTCNSIVRG 99
+R L+Q HA + L T L CA + R +F +S+P + NS+++
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA 82
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASD 156
+ +A LFY M++ ++P + F S+ K+CAD+ + +HS G ASD
Sbjct: 83 SSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASD 142
Query: 157 SFLHNTLINMYS-SCW------CLDQ---------------------PDEAIKIFYRMEI 188
SF+ LI Y+ SC D+ +EA+++F +M
Sbjct: 143 SFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE 202
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
V+P++ T V+VL+A ++ L +H C+ SG +V L T+L++ + +C V R
Sbjct: 203 SRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGR 262
Query: 249 AWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
A +F M+ N W AM + G G
Sbjct: 263 ARAVFYSMI--EGNVVLWTAMISGYGMHG 289
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 54/285 (18%)
Query: 26 LDNINN----NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------- 72
L INN + N + CL L+ C+ + +L QIH +L+ L +P
Sbjct: 11 LRTINNVLASSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASI 70
Query: 73 -----CADYHVRLVFSQISNPTIYTC---NSIVRGYTNKN-LHHEAFLFYHEMIVQGLIP 123
DY +FS ++ +Y N+++R Y +A Y M+ ++P
Sbjct: 71 SSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILP 130
Query: 124 DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------- 170
++F +P + K+CA + V + +H +KFG D + NT+++MYS C
Sbjct: 131 NKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKV 190
Query: 171 -----------WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
W + + EA+ +F M++ V P+ +T+V++L+A L
Sbjct: 191 FDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGAL 250
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K + ++ VE+ L+D + KC +S+A LF M
Sbjct: 251 ELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAM 295
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 44/217 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ T ++++ GY EA + EM + + PD S+ +C D
Sbjct: 187 ARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTD 246
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + K + + + + + N LI+M++ C + +
Sbjct: 247 LGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSV 306
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARA------RARD-LRTVKRVHK 219
EA +F M V P+ V + +L+A + R R+ ++ + +K
Sbjct: 307 IVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYK 366
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + +E ++D YC+ V A + M
Sbjct: 367 LVPK------IEHYGCMVDMYCRTGLVKEALEFVRNM 397
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 121/270 (44%), Gaps = 46/270 (17%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL----FF------DPCADY-HVRLVFSQISNPT 89
H L KC T LKQ + ++ + L FF D + L+F +++ P
Sbjct: 9 HSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLLLFDRLATPY 68
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK--QLHSQ 147
I+ N+I+RG++ + + Y + G+IPDR FP L K+ + + E Q ++
Sbjct: 69 IFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAH 128
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+KFGL D+F+ N+L++ ++ C +D + EA
Sbjct: 129 IVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEA 188
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--FWSHVELKTTLM 237
++ F M V+ + VT+V+VL A A RD+ + VH ESG W V + + L+
Sbjct: 189 LECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWD-VYVGSALV 247
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
D Y KC + A +F +M P N W
Sbjct: 248 DMYSKCGYCDDAVKVFNEM--PTRNLVSWG 275
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 36/219 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F + + + + +++ G EA + EM G+ D S+ + A
Sbjct: 158 RRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAML 217
Query: 137 -DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSC-WCLD------------------- 174
D++ + +H ++ G + D ++ + L++MYS C +C D
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ EA+K+F M IE ++PN T+ + LTA A+ L + +H+ VD S
Sbjct: 278 IAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL 337
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +L T L+D Y KC V A +F K+ ++PW
Sbjct: 338 GLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWT 376
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF+++ + + +++ GY N + EA + EMI++G+ P++ S +CA +
Sbjct: 262 VFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGS 321
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
Q LH + L +S L L++MYS C C+ DEA+ +F ++ ++V P
Sbjct: 322 LDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCV---DEALLVFEKLPAKDVYP-WTA 377
Query: 198 LVNVLTARARA 208
++N L R A
Sbjct: 378 MINGLAMRGDA 388
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 40/237 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ I NP ++T N++ RGY + A FY +MIV + PD +P L K+ + +
Sbjct: 86 VFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLN 145
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ + +HS I+ G S F+ N+L+++Y++C +
Sbjct: 146 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVING 205
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+P EA+ +F M E V+P+ T+V++L+A A L +RVH + + G +
Sbjct: 206 FALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLREN 265
Query: 230 VELKTTLMDAYCKCKFV------SRAWDLFVKMLFPWNNYGQWAMS--ATVGPQGLV 278
+ +L+D Y KC + + +W + L N +G+ A+ + QGLV
Sbjct: 266 SHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGL-AVNGFGEEALELFREMEGQGLV 321
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 126/303 (41%), Gaps = 82/303 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLF--------------FDPCADYHVRL-VFSQI 85
H L L C T++ LKQIH+Q+++T L P D L +F I
Sbjct: 29 HPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTI 88
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEK 142
NP N ++RG ++ A +Y MI G P+ + FPS+FKSC I + K
Sbjct: 89 RNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGK 148
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQP------------------- 176
Q+H+ +K GL ++F+H +LINMY+ L D+
Sbjct: 149 QVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG 208
Query: 177 --DEAIKIFYRMEIENV-------------------------------KPNAVTLVNVLT 203
DEA ++F + + +V PN T+++VL+
Sbjct: 209 FLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLS 268
Query: 204 ARAR-ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LF 258
A A+ L+ V +++ G S++ L L+D Y KC + A +LF K+ +
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVV 328
Query: 259 PWN 261
WN
Sbjct: 329 SWN 331
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 38/223 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F +I + + N+++ GY EA F+ EM + P+ S+ +CA
Sbjct: 212 EARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACA 271
Query: 137 DIYVEKQLHSQAIKF----GLASDSFLHNTLINMYSSCWCLDQPD--------------- 177
QL + + GL S+ L N LI+MY C L++
Sbjct: 272 QSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWN 331
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EA+ +F RM N+ PN VT +++L A A L K VH VD++
Sbjct: 332 VMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKN 391
Query: 225 --GFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ V L T+L+D Y KC ++ A +F K L WN
Sbjct: 392 MKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWN 434
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 48/257 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------------CADYHVRLVFSQISNPTI 90
L++C T ++L+Q+HA +L+T DP DY + +F+ I P
Sbjct: 28 LQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALS-IFNHIDKPES 86
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
N ++RG K A L + +M + + D+F F S+ K+C+ + +Q+H+
Sbjct: 87 SAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHAL 146
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+K G S+ F+ NTLI MY++C + DE
Sbjct: 147 ILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEV 206
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F ++ ++ + VT+++VL A R +L + + + + G + L T+L+D
Sbjct: 207 VKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDM 266
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC V A LF +M
Sbjct: 267 YAKCGQVDTARKLFDEM 283
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 120/282 (42%), Gaps = 51/282 (18%)
Query: 47 LEKCSTM---RELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L+ CS M RE +Q+HA +L++ + C V R VF + +I
Sbjct: 128 LKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSI 187
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
NS++ GYT L E + +++ + D S+ +C A++ + + +
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEY 247
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD-------------------------QPD---EA 179
+ GL ++ L +LI+MY+ C +D Q D EA
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEA 307
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F+ M+ NV PN VT+V+VL + A T K VH + + V L T L+D
Sbjct: 308 LNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDF 367
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
Y KC ++ R+ ++F +M +F W Q + G L
Sbjct: 368 YAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMAL 409
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
PD A+ +F +M ++V+ + T +VL A +R + LR ++VH + +SGF S+ ++ T
Sbjct: 102 PDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENT 161
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L+ Y C + A +F M + WN+
Sbjct: 162 LIQMYANCGQIGVARHVFDGMPERSIVAWNS 192
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 119/268 (44%), Gaps = 49/268 (18%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLF--------------FDPCADYH-VRLVFSQISNPTI 90
SLEKCS+MRELK +HA+++ L D H LVF + P
Sbjct: 50 SLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNK 109
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--IYVEK-QLHSQ 147
+ N ++RGY+ A Y +M+ G +P+RF P + KSCA Y E +H Q
Sbjct: 110 FMFNCLIRGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQ 169
Query: 148 AIKFGLASDSFLHNTLINMYSS---CWCLDQP-DE------------------------A 179
AI+ G+ S ++HN LIN Y+ C Q DE A
Sbjct: 170 AIRLGMLSHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGA 229
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD- 238
+F M +P+ TLV++L+ +++ L K VH V+ +G + L+ L+D
Sbjct: 230 FLLFREMRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDI 289
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
AY K + A ++F ++ P N W
Sbjct: 290 AYSKHGLIRHAREIFDQI--PEKNVISW 315
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF ++SN T+ + NS++ GY L AFL + EM G PD+F L C+
Sbjct: 201 VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCR 260
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSS---------------------------- 169
+ + K +H G+ D L N L+++ S
Sbjct: 261 LDIGKSVHHYVEITGIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMIL 320
Query: 170 CWCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C+ D Q EA+ +F +M + P+ TLV+VL+A ++ DL ++ H C+
Sbjct: 321 CYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVI 380
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
V L +L+D Y KC + D F K L WN
Sbjct: 381 TVTLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWN 417
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 15/183 (8%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H R +F QI + + NS++ Y EA L + +M +IPD S+ +C+
Sbjct: 299 HAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACS 358
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
D+ + ++ H + + L N+L++MY C L + + F+ + +N+
Sbjct: 359 QIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGAL---ETVLDFFFEFKDKNLVS 415
Query: 194 NAVTLVNVLTARARARD-LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
+ ++ L D L+ +H +G W K T M C +S D+
Sbjct: 416 WNI-VIQALALHGHGLDALKLFNMMHT----TGIWPD---KFTFMGLLSACNHLSTWDDI 467
Query: 253 FVK 255
+++
Sbjct: 468 YLR 470
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 44/255 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCAD----YHVRLVFSQISNPTIYTC 93
L++CS+M+ LK +HAQ++ L C + L+F QI P +
Sbjct: 46 LDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMY 105
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--IYVEKQL-HSQAIK 150
N ++RGY+N N ++ L + +M+ G +P++F FP + K+CA Y E + H+QAIK
Sbjct: 106 NHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIK 165
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G+ + + N ++ Y +C + DEAI +
Sbjct: 166 LGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILL 225
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M V+ + TLV++L+A ++ +L + VH + +G + L+D Y K
Sbjct: 226 FQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAK 285
Query: 243 CKFVSRAWDLFVKML 257
C + A +F +ML
Sbjct: 286 CGHLQFAKHVFDQML 300
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 106/263 (40%), Gaps = 66/263 (25%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF IS+ TI + NS++ GY+ EA L + EM+ G+ D F SL + +
Sbjct: 192 RQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKH 251
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQ------------- 175
++ + + +H + G+ DS + N LI+MY+ C L DQ
Sbjct: 252 CNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMV 311
Query: 176 --------PDEAIKIF-------------------------------YRMEIENVKPNAV 196
+ A++IF +RM I V P+
Sbjct: 312 NAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDA 371
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
TLV++L+ + DL K+ H + ++ V L +L+D Y KC + A D+F M
Sbjct: 372 TLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGM 431
Query: 257 LFPWNNYGQWAMSATVGPQGLVG 279
P N W + +G L G
Sbjct: 432 --PEKNVVSW--NVIIGALALHG 450
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 142/328 (43%), Gaps = 62/328 (18%)
Query: 2 AAPLPLHHQTRTP-ALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIH 60
A P HH P S++ S L ++A L++ + +++ LKQ H
Sbjct: 29 ATEAPYHHHHLIPNGHSTETSKL-------------SHKAILHLLNTQCTTSLHHLKQAH 75
Query: 61 AQMLRTSLFFDP-CADYHVR-----------------LVFSQISNPTIYTCNSIVRGYTN 102
A +LRT D A V+ VF + P ++ N +++
Sbjct: 76 ALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIE 135
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFL 159
N +A L Y+EM+V P+++ +P++ K+C+D V Q+H+ +K GL D +
Sbjct: 136 NNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHI 195
Query: 160 HNTLINMYSSCWCLDQ-----------------PD------EAIKIFYRMEIENVKPNAV 196
++ I MY+S L + PD EA++IF++M+ E ++P
Sbjct: 196 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQKEKIRPRKF 255
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L +VL+A A L + +H + L T+L+D Y KC + AW++F KM
Sbjct: 256 VLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKM 315
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+N + +A +G + GR A
Sbjct: 316 ----SNKEVSSWNAMIGGLAMHGRAEDA 339
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 133/312 (42%), Gaps = 64/312 (20%)
Query: 47 LEKC---STMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
LE C ++ E K+IH L+ T L+ R +F +I NP++
Sbjct: 15 LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
N I+R Y A YH M+ G+ P+++ +P + K+C+ + + ++HS
Sbjct: 75 ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A FGL SD F+ L++ Y+ C L + D+A
Sbjct: 135 AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTTLMD 238
+++ +M+ E + PN+ T+V VL A+ L K +H CV S F + V + T L+D
Sbjct: 195 VQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS-FDNGVVVGTGLLD 253
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKL 298
Y KC+ + A +F M N W SA +G ++ C K+A +L
Sbjct: 254 MYAKCQCLLYARKIFDVM--GVRNEVSW--SAMIGG-----------YVASDCMKEALEL 298
Query: 299 FFFSMLKKVHVP 310
F +LK P
Sbjct: 299 FDQMILKDAMDP 310
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 41/237 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSC 135
+ R +F + + ++++ GY + EA + +MI++ + P S+ ++C
Sbjct: 263 YARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----DE---------- 178
A D+ ++LH IK G D L NTL++MY+ C +D DE
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFS 382
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
A+ IF M++ + P+ T++ VL A + L+ H +
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
GF + + L+D Y KC +S A ++F +M + WN AM G GL
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWN-----AMIIGYGIHGL 494
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF+++ I + N+++ GY L EA +H+++ GL PD F L SC+
Sbjct: 468 REVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 115/260 (44%), Gaps = 47/260 (18%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL----FF----------DPCAD--YHVRLVFSQ 84
H L L+ CS+ L +IHAQ+L + L FF P + Y L+F
Sbjct: 31 HQLLSLLKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHC 90
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---E 141
+ N I+RGY++ + EA + EM +G+ P+ FP L K+CA +
Sbjct: 91 HFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEG 150
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ 175
KQ H+ AIK GL D ++ NTLIN Y SC W C++
Sbjct: 151 KQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVEN 210
Query: 176 --PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
DEAI F +M +P+ T+V +L+A A +L + VH V G +V+L
Sbjct: 211 FCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLG 270
Query: 234 TTLMDAYCKCKFVSRAWDLF 253
T +D Y K V A +F
Sbjct: 271 TAFVDMYAKSGDVGCARHVF 290
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 35/167 (20%)
Query: 130 SLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLI---------NMYSSCWCL------- 173
SL K C+ ++H+Q + GL +DSF L+ N+ C L
Sbjct: 35 SLLKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHS 94
Query: 174 ---------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
D P EAI +F M V+PN +T +L A A L+ K+ H
Sbjct: 95 ATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFH 154
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ G V ++ TL++ Y CK +S A +F +M L WN
Sbjct: 155 AIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWN 201
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 44/211 (20%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNP 88
F L + +T++E KQ HA ++ L F+ C R VF +++
Sbjct: 136 FLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTER 195
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
T+ + N+++ EA ++ +M G PD + +CA+ + + + +H
Sbjct: 196 TLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVH 255
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW----------CLDQ------------------PD 177
SQ + G+ + L ++MY+ CL Q +
Sbjct: 256 SQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFAN 315
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
EAI++F M + PN VT + VL A + A
Sbjct: 316 EAIELFTNMTSSPIVPNHVTFIGVLCACSHA 346
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 34/191 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N++V GY + AFL Y ++ G +PD F FP++ KSCA I +Q+H IK
Sbjct: 3 NALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIK 62
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G + ++ N+L++ YS C DEA+ +
Sbjct: 63 MGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGL 122
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F RM++E PNA T V+VL A R L K +H +S F +E+ LMD Y K
Sbjct: 123 FLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVK 179
Query: 243 CKFVSRAWDLF 253
C + A +F
Sbjct: 180 CGCLPGAKQVF 190
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 51/266 (19%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L S K + E +Q+H +++ F+ C + VF ++ +
Sbjct: 41 LKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDV 100
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ ++ GY L EA + M V+ P+ F S+ +C + V K +H
Sbjct: 101 VSWTGVISGYVRAGLFDEAVGLFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGL 157
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
+ K + N L++MY C CL + P EA
Sbjct: 158 SFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEA 217
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F M+ ++P+ + L +VL+A AR L + VH+ +D +++ T ++D
Sbjct: 218 LELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDM 277
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y KC + + +F M + WN
Sbjct: 278 YAKCGCIEMSMQIFNGMPHKNVLTWN 303
>gi|296085509|emb|CBI29241.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 45/194 (23%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTIYTC 93
C TM++LKQ+HAQM++T+ DP A DY R +F + P ++
Sbjct: 21 CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDY-ARKIFRSMHRPNCFSY 79
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCAD---IYVEKQLHSQAI 149
N+++R + N +A L + EM+ + P+ F FPS+FK+C + +Q+H A+
Sbjct: 80 NTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAV 139
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP------------------------DEAIKIFYR 185
KFGL SD F+ + ++ MY SC ++ +A+++F
Sbjct: 140 KFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDAVEVFRE 199
Query: 186 MEIENVKPNAVTLV 199
M++ V PN VTLV
Sbjct: 200 MQMAEVPPNYVTLV 213
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 37/164 (22%)
Query: 129 PSLFKSCADIYVEKQLHSQAIK---------------FGLASD----------------- 156
PS F C + KQLH+Q IK F SD
Sbjct: 15 PSSFFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRP 74
Query: 157 -SFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTV 214
F +NTLI S + P +A+ +F M E +V+PN T +V A RA LR
Sbjct: 75 NCFSYNTLIRALSES---NDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREG 131
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
++VH + G S + + ++ Y C + A LF + +F
Sbjct: 132 RQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVF 175
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 46/277 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F I P TC++++ +T + L +EA Y + +G+ P +F ++ K+C D
Sbjct: 88 LFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGD 147
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
K++H AI+ G+ SD+FL N LI+ Y C C++
Sbjct: 148 ASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSC 207
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P + +F M VKPN+VTL ++L A + +DL++ + +H G +
Sbjct: 208 YVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIEN 267
Query: 230 VELKTTLMDAYCKCKFVSRA--------------WDLFVKMLFPWNNYGQW-AMSATVGP 274
V + + L+ Y +C V +A W+ + F Y + A+ + +
Sbjct: 268 VFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSS 327
Query: 275 QGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPG 311
+G+ +T + + G C + ML+K+ G
Sbjct: 328 KGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLG 364
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 55 ELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTIYTCNSIVRGY 100
+K++H +R + D C + R VF + + + S+ Y
Sbjct: 150 RVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVE-GARRVFDDLVVKDVVSWTSMSSCY 208
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDS 157
N L + EM G+ P+ S+ +C+ D+ + +H A++ G+ +
Sbjct: 209 VNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENV 268
Query: 158 FLHNTLINMYSSCWCLDQ 175
F+ + L+++Y+ C + Q
Sbjct: 269 FVCSALVSLYARCLSVKQ 286
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
L SQ G+ +D N +I C Q ++A+++ +M+ KPN +T+ + L
Sbjct: 321 LFSQMSSKGVEADEATWNAVIG---GCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLP 377
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFP 259
A + LR K VH V + T L+ Y KC ++ + ++F K +
Sbjct: 378 ACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVA 437
Query: 260 WN 261
WN
Sbjct: 438 WN 439
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 75/285 (26%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCAD----YHVRLVFSQISNPTIYTC 93
L++CS ++ L Q H ML L F + C+ ++ +F+ + P IY
Sbjct: 48 LKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLY 107
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+I++ +N L EA L Y+ ++ L D + P + K+ I+V +Q+H QAI
Sbjct: 108 NTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIG 167
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
GL SD + LI MYSSC C+ + D A +
Sbjct: 168 TGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHL 227
Query: 183 FYR-------------------------------MEIENVKPNAVTLVNVLTARARARDL 211
F R M++E V+P+ + ++ L+A A L
Sbjct: 228 FERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGAL 287
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +H +D+ G V L L+D Y KC + +A ++F M
Sbjct: 288 ELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 101/243 (41%), Gaps = 34/243 (13%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F ++ + + +++ GY + +EA + M ++ + PD + +CA
Sbjct: 225 RHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHL 284
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ + + +H+ K GL+ L+N LI+MY+ C +++
Sbjct: 285 GALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMI 344
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGF 226
EA+++F ME +KPN +T V +L+A + + KC+ + G
Sbjct: 345 DGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGI 404
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN--YGQWAMSATVGPQGLVGRHSTA 284
++ ++D + F+ A +L M F N +G +A + +G+ +
Sbjct: 405 KPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQ 464
Query: 285 HQI 287
H I
Sbjct: 465 HLI 467
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
M+ +GL D + ++C+ + HS D +L+NT+I S+ +
Sbjct: 64 MLSRGLDQDNILLSRFIEACSSLGFSHYSHS-IFTHKTRPDIYLYNTIIKALSNP---EL 119
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EAI ++ R+ +++ + +L VL A R + +++H +G S + + T
Sbjct: 120 ATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTA 179
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFP----WN 261
L+ Y C VS A LF + F WN
Sbjct: 180 LIQMYSSCGCVSEARQLFDGVCFRDVAFWN 209
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 50/257 (19%)
Query: 51 STMRELKQIHAQMLRTS------------LFF-----DPCADYHVRLVFSQISNP-TIYT 92
S++ +L+QIHA +R +F+ P + VFS+I P ++
Sbjct: 28 SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYVEKQLHSQA 148
N+++RGY AF Y EM V GL+ PD +P L K+ AD+ + + +HS
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAI 180
I+ G S ++ N+L+++Y++C + +P+EA+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ M + +KP+ T+V++L+A A+ L KRVH + + G ++ L+D Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267
Query: 241 CKCKFVSRAWDLFVKML 257
+C V A LF +M+
Sbjct: 268 ARCGRVEEAKTLFDEMV 284
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 47/263 (17%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLF-----------FDPCADY----HVRLVFSQI 85
H L+++E C++M +LKQI A M +T+L F +D H L+FSQ+
Sbjct: 51 HPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQL 110
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEK 142
NP Y N+++RGY+ + FLF+ +M+ +G+ D F K+C + K
Sbjct: 111 QNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGK 170
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------------- 176
+H K G + N L++ Y CL
Sbjct: 171 SVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHK 230
Query: 177 --DEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
DEA+K+F M + V+PN VT++ VL++ ++ DL K + V + L
Sbjct: 231 WCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLM 290
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
++D Y KC + A ++F M
Sbjct: 291 NAILDMYVKCGCLDSAREIFDTM 313
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 13/193 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC-- 135
RLVF +IS + + S++ GY+ EA + M++ G++ P+ ++ SC
Sbjct: 205 RLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQ 264
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194
D+ + K + L N +++MY C CLD E IF M P
Sbjct: 265 KGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSARE---IFDTMGAA-FAPM 320
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLF 253
TL VL + L + +H+ + V L L+D Y KC + A +F
Sbjct: 321 ENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVF 380
Query: 254 VKM----LFPWNN 262
M L WN+
Sbjct: 381 NDMPERNLVSWNS 393
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 65/274 (23%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA-----------------DYHVRLVFSQISNPTI 90
E CS M +LKQ+HA LRT+ +P +Y R VF I N +
Sbjct: 113 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR-VFDSIENHSS 171
Query: 91 YTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY---VEKQLH 145
+ N+++R + + EAF+ Y +M+ +G PD+ FP + K+CA I+ KQ+H
Sbjct: 172 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 231
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
Q +K G D +++N LI++Y SC CLD + D
Sbjct: 232 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 291
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KC-VDESGFWSHVE 231
A+++F M+ + +P+ T+ +VL+A A L H KC VD + V
Sbjct: 292 SALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA---MDVL 347
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+K +L++ YCKC + A +F M L WN
Sbjct: 348 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 381
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 75/285 (26%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCAD----YHVRLVFSQISNPTIYTC 93
L++CS ++ L Q H ML L F + C+ ++ +F+ + P IY
Sbjct: 48 LKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLY 107
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+I++ +N L EA L Y+ ++ L D + P + K+ I+V +Q+H QAI
Sbjct: 108 NTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIG 167
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
GL SD + LI MYSSC C+ + D A +
Sbjct: 168 TGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHL 227
Query: 183 FYR-------------------------------MEIENVKPNAVTLVNVLTARARARDL 211
F R M++E V+P+ + ++ L+A A L
Sbjct: 228 FERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGAL 287
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +H +D+ G V L L+D Y KC + +A ++F M
Sbjct: 288 ELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F ++ + + +++ GY + +EA + M ++ + PD + +CA
Sbjct: 225 RHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHL 284
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ + + +H+ K GL+ L+N LI+MY+ C +++
Sbjct: 285 GALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMI 344
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GF 226
EA+++F ME +KPN +T V +L+A + + KC+ G
Sbjct: 345 DGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGI 404
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN--YGQWAMSATVGPQGLVGRHSTA 284
++ ++D + F+ A +L M F N +G +A + +G+ +
Sbjct: 405 KPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQ 464
Query: 285 HQI 287
H I
Sbjct: 465 HLI 467
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
M+ +GL D + ++C+ + HS D +L+NT+I S+ +
Sbjct: 64 MLSRGLDQDNILLSRFIEACSSLGFSHYSHS-IFTHKTRPDIYLYNTIIKALSNP---EL 119
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EAI ++ R+ +++ + +L VL A R + +++H +G S + + T
Sbjct: 120 ATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTA 179
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFP----WN 261
L+ Y C VS A LF + F WN
Sbjct: 180 LIQMYSSCGCVSEARQLFDGVCFRDVAFWN 209
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 117/278 (42%), Gaps = 59/278 (21%)
Query: 53 MRELKQIHAQMLRTSL---------FFDPCA-------DYHVRLVFSQISNPTIYTCNSI 96
M++ KQIHAQ++ +L CA DY LVF+QIS P + NS+
Sbjct: 1 MKQSKQIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDY-AHLVFNQISIPNKFMYNSL 59
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGL 153
+RGY N N ++ Y ++I GL P+ F FP + K+CA ++ +H A K G
Sbjct: 60 IRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGF 119
Query: 154 ASDSFLHNTLINMYSSC--------------------------------WCLDQPDEAIK 181
AS + N LIN Y +C WC E
Sbjct: 120 ASLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWC----KEVFL 175
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M + + TLVN+L +R D+ + VH + +G + + L+D Y
Sbjct: 176 LFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYA 235
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
KC + A +F +M P N W +M QGLV
Sbjct: 236 KCGALVLAERVFQQM--PNKNVVSWTSMITAYAKQGLV 271
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
N++I+ Y Q EA+ +F+ M V PN TL++VL+A + DL K++H
Sbjct: 290 NSMISSYVQG---GQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNY 346
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + V L +L+D Y KC + A D+F +M L WN
Sbjct: 347 ICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWN 391
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 31/159 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
+ R F Q+ + + NS++ Y EA +HEM ++P+ S+ +C
Sbjct: 273 YARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLSACG 332
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPD-------- 177
D+ + K++H+ L N+LI+MY+ C L + P+
Sbjct: 333 QIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNV 392
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F +M+ V P+ +T + +L+A
Sbjct: 393 IIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLLSA 431
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 52/255 (20%)
Query: 53 MRELKQIHAQMLR-----TSLFF-----------DPCADY-HVRLVFSQISNPTIYTCNS 95
M+ L+QIHA++L +S+ F P ++ + R +FSQI NP I+ NS
Sbjct: 1 MQILRQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNS 60
Query: 96 IVRG--YTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYV---EKQLHSQAI 149
++RG YT K E + +M+ +G P+ F + K+C+ I KQ+H+Q +
Sbjct: 61 VIRGCLYT-KIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQIL 119
Query: 150 KFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIK 181
+ G +S ++ ++L+N YS C W L +EA+
Sbjct: 120 RSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALI 179
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M++ ++P+ V+LV VL+A A L K VH + + +EL T L++ Y
Sbjct: 180 MFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYA 239
Query: 242 KCKFVSRAWDLFVKM 256
KC + +A ++F +M
Sbjct: 240 KCGCIEKAREIFDEM 254
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 47/252 (18%)
Query: 47 LEKCS---TMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L+ CS + E KQIHAQ+LR+ F+ C + + R VF +I+ +
Sbjct: 99 LKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNL 158
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+++V GY + +EA + + EM V G+ PD + +CA + + K +H+
Sbjct: 159 VCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAY 218
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------------A 179
K + D L+ LINMY+ C C+++ E A
Sbjct: 219 IKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDA 278
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F RME KPN VT + +L+A A + KR + E G +E ++D
Sbjct: 279 LNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDL 338
Query: 240 YCKCKFVSRAWD 251
C+ + A+D
Sbjct: 339 LCRGGLIDEAYD 350
>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1198
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 49/260 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSL------FFDPCADY-------HVRLVFSQISNPT 89
C+ ++ S + LK +HA MLR+ L F + A Y H +FS SNPT
Sbjct: 476 CISLIKNTSGLHSLKALHASMLRSYLHLNLYFFTNLVAQYTSLGFISHAYSLFS-TSNPT 534
Query: 90 -IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+ N ++RG+ + +++A L Y +M+ + P F +FK+C DI KQ+H
Sbjct: 535 DAFLWNVMIRGFVDHAQYYDAILLYRQMVQLSIKPTNFTLTFVFKACGCLRDIEFGKQVH 594
Query: 146 SQAIKFGLASDSFLHNTLINMYSS--------------------CW------CL--DQPD 177
A+K G D F+ N+LI MY+ CW CL ++ D
Sbjct: 595 DDAVKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNGICWNSMIGACLITERYD 654
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E +K+F++M E ++ + L+NV+ D V RV + ++GF ++ +
Sbjct: 655 EGVKLFWQMSGEGIRLDRAALLNVMRCVRTENDGNGVSRVAR---DAGFNLDQYVQNAAI 711
Query: 238 DAYCKCKFVSRAWDLFVKML 257
Y KC + A +F +L
Sbjct: 712 GMYAKCGRLDLARSIFDGIL 731
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 50/284 (17%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTI 90
+ C +R++ KQ+H ++ D C Y + R VF ++S+
Sbjct: 578 FKACGCLRDIEFGKQVHDDAVKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNG 637
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
NS++ + E + +M +G+ DR ++ + + A
Sbjct: 638 ICWNSMIGACLITERYDEGVKLFWQMSGEGIRLDRAALLNVMRCVRTENDGNGVSRVARD 697
Query: 151 FGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIKI 182
G D ++ N I MY+ C W +D P +++ +
Sbjct: 698 AGFNLDQYVQNAAIGMYAKCGRLDLARSIFDGILNKDIVTWANMIEAYTQVDLPLQSLVL 757
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--FWSHVELKTTLMDAY 240
F +M ++N P++VTL++V+ A L+ VH V +G F S + ++T + D Y
Sbjct: 758 FKQMMLQNACPDSVTLLSVVRACTILASLQHAHAVHGIVIVTGGFFNSELAVETAVTDLY 817
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
KC ++ A +F +M N + SA + G+ G A
Sbjct: 818 AKCGSLTYARKVFDRM----QNRNIISWSAIISGYGMHGHGREA 857
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 56/282 (19%)
Query: 30 NNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYH 77
N+NN + ++ C++S +R +Q+HA++L + L D C
Sbjct: 62 NHNNYATILRS--CVLS----RAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVS 115
Query: 78 V-RLVFSQISN-PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKS 134
V R +F ++ N ++ N ++R Y A Y EM+ G + PD F +P + K+
Sbjct: 116 VARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKA 175
Query: 135 CA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------- 175
CA D+ +++H + ++ A+D F+ LI+MY+ C C+D+
Sbjct: 176 CAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVW 235
Query: 176 ------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
P EA+ + M E + P VTLV+ ++A A A L + +H
Sbjct: 236 NSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWR 295
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
GF S +LKT+L+D Y K +V+ A LF ++ L WN
Sbjct: 296 RGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWN 337
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 132/312 (42%), Gaps = 64/312 (20%)
Query: 47 LEKC---STMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
LE C ++ E K+IH L+ T L+ R +F +I NP++
Sbjct: 15 LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
N I+R Y A YH M+ G+ P+++ +P + K+C+ + + ++HS
Sbjct: 75 ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A FGL SD F+ L++ Y+ C L + D+A
Sbjct: 135 AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTTLMD 238
+++ +M+ E + PN+ T+V VL A+ L K +H CV S F + V + T L+D
Sbjct: 195 VQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS-FDNGVVVGTGLLD 253
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKL 298
Y KC+ + A +F M N W SA +G + C K+A +L
Sbjct: 254 MYAKCQCLLYARKIFDVM--GVRNEVSW--SAMIGG-----------YVXSDCMKEALEL 298
Query: 299 FFFSMLKKVHVP 310
F +LK P
Sbjct: 299 FDQMILKDAMDP 310
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 41/237 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSC 135
+ R +F + + ++++ GY + EA + +MI++ + P S+ ++C
Sbjct: 263 YARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------PDE----- 178
A D+ ++LH IK G D L NTL++MY+ C +D P +
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFS 382
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
A+ IF M++ + P+ T++ VL A + L+ H +
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
GF + + L+D Y KC +S A ++F +M + WN AM G GL
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWN-----AMIIGYGIHGL 494
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF+++ I + N+++ GY L EA +H+++ GL PD F L SC+
Sbjct: 468 REVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 48/253 (18%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTIY 91
+KC++M +LKQIHAQM+ ++ D CA Y +RL F+ P +
Sbjct: 36 DKCTSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRL-FNNTQEPNSF 94
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQA 148
N+++R + + EA L Y +M +IP + FP L K+C++ + Q+H+
Sbjct: 95 MWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHV 154
Query: 149 IKFGLASDSFLHNTLINMYS-SC------WCLDQ---------------------PDEAI 180
+KFGL + + N L+ YS SC D+ +EA+
Sbjct: 155 LKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 214
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++F +M +E ++PN TL +VL+A A++ L +R+H ++E G V L T L+ Y
Sbjct: 215 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 274
Query: 241 CKCKFVSRAWDLF 253
K + A LF
Sbjct: 275 AKNGAILMAQKLF 287
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 47/218 (21%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD-------------PCADYHVRLVFSQISNPTI 90
L+ CS + L+ Q+H +L+ L + C + R VF ++S ++
Sbjct: 135 LKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSL 194
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+++ GY +EA + +MIV+GL P+ S+ +CA + + +++H
Sbjct: 195 SIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVF 254
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
+ G+ L L++MY+ + EA
Sbjct: 255 MEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEA 314
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+ F+++E E + PN +T V VL+A A L +++
Sbjct: 315 LDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKI 352
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 110/262 (41%), Gaps = 51/262 (19%)
Query: 50 CSTMRELKQIHA---------------QMLRTSLFFDPCADYHVRLVFSQISNPTIYTCN 94
CS++ +L +IHA +++ T+ P DY R +F Q+ ++ N
Sbjct: 39 CSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDY-ARKMFDQMPKRDVFLWN 97
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF 151
+++RGY + EA Y M GL PD + FP + +SCA + K++H +K
Sbjct: 98 TLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKH 157
Query: 152 GLASDSFLHNTLINMYS-SCWCLDQP---------------------------DEAIKIF 183
G SD F+ ++L+ MYS S L E + +F
Sbjct: 158 GFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVF 217
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
M +PNAVTLV+VL A A L K +H + G V L L+ Y KC
Sbjct: 218 REMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKC 277
Query: 244 KFVSRAWDLF----VKMLFPWN 261
V A LF V+ L WN
Sbjct: 278 GNVETARSLFDGMVVQNLVSWN 299
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 44/263 (16%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQ 84
Y F + S S +RE K++H +++ +++ + LVF +
Sbjct: 129 YTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGE 188
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VE 141
+ I + +++ GY E + EM+ G P+ S+ +CA + +
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG 248
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------- 178
K +H IK G+ D L N LI +Y C ++
Sbjct: 249 KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQN 308
Query: 179 -----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
A+K+F RM+ E V + +T+V+V++A A L T + +H+ V G +V +
Sbjct: 309 NAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSIT 368
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + A ++F ++
Sbjct: 369 NALIDMYAKCGNIDLAREVFERL 391
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 48/253 (18%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTIY 91
+KC++M +LKQIHAQM+ ++ D CA Y +RL F+ P +
Sbjct: 34 DKCTSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRL-FNNTQEPNSF 92
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQA 148
N+++R + + EA L Y +M +IP + FP L K+C++ + Q+H+
Sbjct: 93 MWNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHV 152
Query: 149 IKFGLASDSFLHNTLINMYS-SC------WCLDQ---------------------PDEAI 180
+KFGL + + N L+ YS SC D+ +EA+
Sbjct: 153 LKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 212
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++F +M +E ++PN TL +VL+A A++ L +R+H ++E G V L T L+ Y
Sbjct: 213 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 272
Query: 241 CKCKFVSRAWDLF 253
K + A LF
Sbjct: 273 AKNGAILMAQKLF 285
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 47/218 (21%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD-------------PCADYHVRLVFSQISNPTI 90
L+ CS + L+ Q+H +L+ L + C + R VF ++S ++
Sbjct: 133 LKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSL 192
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+++ GY +EA + +MIV+GL P+ S+ +CA + + +++H
Sbjct: 193 SIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVF 252
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
+ G+ L L++MY+ + EA
Sbjct: 253 MEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEA 312
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+ F+++E E + PN +T V VL+A A L +++
Sbjct: 313 LDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKI 350
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 110/262 (41%), Gaps = 51/262 (19%)
Query: 50 CSTMRELKQIHA---------------QMLRTSLFFDPCADYHVRLVFSQISNPTIYTCN 94
CS++ +L +IHA +++ T+ P DY R +F Q+ ++ N
Sbjct: 39 CSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDY-ARKMFDQMPKRDVFLWN 97
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF 151
+++RGY + EA Y M GL PD + FP + +SCA + K++H +K
Sbjct: 98 TLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKH 157
Query: 152 GLASDSFLHNTLINMYS-SCWCLDQP---------------------------DEAIKIF 183
G SD F+ ++L+ MYS S L E + +F
Sbjct: 158 GFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVF 217
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
M +PNAVTLV+VL A A L K +H + G V L L+ Y KC
Sbjct: 218 REMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKC 277
Query: 244 KFVSRAWDLF----VKMLFPWN 261
V A LF V+ L WN
Sbjct: 278 GNVETARSLFDGMVVQNLVSWN 299
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 44/211 (20%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQ 84
Y F + S S +RE K++H +++ +++ + LVF +
Sbjct: 129 YTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGE 188
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VE 141
+ I + +++ GY E + EM+ G P+ S+ +CA + +
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG 248
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------- 178
K +H IK G+ D L N LI +Y C ++
Sbjct: 249 KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQN 308
Query: 179 -----AIKIFYRMEIENVKPNAVTLVNVLTA 204
A+K+F RM+ E V + +T+V+V++A
Sbjct: 309 NAGANAVKLFRRMQAEKVDFDYITMVSVISA 339
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 31/236 (13%)
Query: 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------C---------ADYHVRLVFS 83
+H L L+KC ++ ELKQ+HA ++ L D C +Y R VFS
Sbjct: 14 SHNLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYR-VFS 72
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK- 142
Q+S+PTI++ N+I+RGY+N ++ + +M+ G+ PD +P L K+ A + ++
Sbjct: 73 QLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQET 132
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+H+ IK G SD F+ N+LI+MY++C A K+F ++ +NV V+ +
Sbjct: 133 GVSVHAHIIKTGHESDRFIQNSLIHMYAAC---GNSMWAQKVFDSIQQKNV----VSWNS 185
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+L A+ ++ ++ + + E V ++L+D Y K S A +F KM
Sbjct: 186 MLDGYAKCGEMVMAQKAFESMSE----KDVRSWSSLIDGYVKAGEYSEAMAIFEKM 237
>gi|297739162|emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 69/258 (26%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHV---------------RLVFSQISNPTIY 91
L C T+++L QIHAQ + T +F D + R +F +I P I+
Sbjct: 78 LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIF 137
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI---YVEKQLHSQ 147
N+++R Y +A +FY EM ++ PD FP L K+C++I + + +HS
Sbjct: 138 IANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSH 197
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD-----------------------------E 178
K G +S+ + N L+ MY+SC ++ E
Sbjct: 198 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDDVVSWSVMINGYVQESRFKE 257
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+ +F M E ++PN LVN L +++R V L T L+D
Sbjct: 258 GLGLFQDMMGEKIEPNESVLVNAL------KNVRLT---------------VRLGTALID 296
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC V RA ++F KM
Sbjct: 297 MYSKCGSVERALEVFHKM 314
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 114/268 (42%), Gaps = 55/268 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV---------------FSQISNP 88
LE C + + L KQ+HA++ + + ++ D +LV F +I
Sbjct: 65 LESCISAKALEPGKQLHARLCQLGIAYN--LDLATKLVNFYSVCNSLRNAHHLFDKIPKG 122
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
++ N ++R Y H A YH+M+ GL PD F P + K+C + I + +H
Sbjct: 123 NLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIH 182
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPD 177
+ I+ G D F+ L++MY+ C C+ PD
Sbjct: 183 ERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPD 242
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E++ + M + V+P TLV V+++ A L + +H GF + ++KT L+
Sbjct: 243 ESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALI 302
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWN 261
D Y KC V A LF ++ + WN
Sbjct: 303 DMYAKCGSVKVACVLFERLREKRVVSWN 330
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 137/331 (41%), Gaps = 93/331 (28%)
Query: 37 QYQAHFCLVSL-EKCSTMRELKQIHAQMLRTSLFFDP------CADY---------HVRL 80
QY H +SL + CS +E++Q+HA L+T++F P A Y + R
Sbjct: 12 QYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARS 71
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F +I ++ N+I++ Y H+ + +HE+ V +PD F P + K CA + V
Sbjct: 72 IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGV 130
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
KQ+H A+K G SD F+ +L+NMYS C +D
Sbjct: 131 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 190
Query: 177 ------------------DEAIKIFYRMEIENV--------------------------- 191
D A+++FY+M I ++
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 250
Query: 192 ----KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+P+ TLV+VL+A + L + +H ++++GF L T+L++ Y KC +
Sbjct: 251 KLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIE 310
Query: 248 RAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
A +F + G W A+ +G G+
Sbjct: 311 SALTVFRAI--QKKKVGHWTAIIVGLGIHGM 339
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 35/220 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R +F + P ++ N+I+R Y+ N++ + Y M G+ PD F FP + K+C
Sbjct: 106 YARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACT 165
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL 173
D + +H Q IK+G SD F+ N L+ +Y+ C W
Sbjct: 166 ELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTS 225
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ EA+++F +M VKP+ + LV++L A DL + +H V + G
Sbjct: 226 IISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMG 285
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L +L Y KC V+ A F +M + WN
Sbjct: 286 LEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWN 325
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 37/234 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
++VF + + TI + SI+ GY EA + +M G+ PD S+ ++ D+
Sbjct: 209 KVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDV 268
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQ------------- 175
+Q +H IK GL + L +L Y+ C + DQ
Sbjct: 269 DDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMI 328
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+EA+ +F+ M N+KP++VT+ + + A A+ L + + V +S +
Sbjct: 329 SGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYG 388
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAM-SATVGPQGLVGR 280
S + + T+L+D Y KC V F + +F N+ M SA + GL G+
Sbjct: 389 SDIFVNTSLIDMYAKCGSVE-----FARRVFDRNSDKDVVMWSAMIMGYGLHGQ 437
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 45/214 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF QI +PT + N+++RG + +A +FY + +G+ PD FP + K+CA Y
Sbjct: 366 VFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYA 425
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
K Q+HS IK G D F+ N+LI++Y++C L
Sbjct: 426 PKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGG 485
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD-------LRTVKRVHKCVD 222
++ E + +F M+ E V+ + VT+V V++A D +R ++R H VD
Sbjct: 486 YSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVD 545
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L TL+D YC+ + A +F +M
Sbjct: 546 -------VYLGNTLIDYYCRIGQLQSAEKVFSQM 572
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
+F QI N + + +S++ Y+ + ++ + +M + PD + S+ +CA +
Sbjct: 599 IFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGA 658
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ K +H + + +D+ + N+LI+M++ C C+ +
Sbjct: 659 LDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILG 718
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
DEA+ IFY M E +PN VT + VL A A R
Sbjct: 719 LANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKR 758
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 32/160 (20%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ RL+F Q+ + + ++ GYT L+ EA + M+ G+ P ++ + +
Sbjct: 24 YARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAIS 83
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-----------LDQPD----- 177
+ I + + LH +K G+ SD+ + N+LI++Y+ LD+ +
Sbjct: 84 NLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWT 143
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F M ++PN +T ++V+ A
Sbjct: 144 SIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINA 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 43/239 (17%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNP 88
F L + K +E +Q+H+ +++ D C D R +F ++
Sbjct: 415 FVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK 474
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---------- 138
+ + NS++ GY+ +N E + M + + D+ + +C +
Sbjct: 475 DVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMV 534
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
Y+E+ H + D +L NTLI+ Y + Q A K+F +M+ N VT
Sbjct: 535 RYIERN-HIEV-------DVYLGNTLIDYYCR---IGQLQSAEKVFSQMK----DKNTVT 579
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L ++ A A+ +L + K++ + S ++++ AY + S + +LF +M
Sbjct: 580 LNAMIHAYAKGGNLVSAKKIFDQIPNKDLISW----SSMICAYSQASHFSDSLELFRQM 634
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 43/202 (21%)
Query: 65 RTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
R+ + + H LV S + N Y + ++R Y L +F H++ Q P
Sbjct: 319 RSFVMMEAVKKLHAHLVVSGLHNCQ-YAMSKVIRSYA---LQQSDLVFAHKVFEQIESPT 374
Query: 125 RFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
F++ +L + GLA D P +AI +
Sbjct: 375 TFLWNTLLR------------------GLAQS-----------------DAPKDAIVFYK 399
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+ + + +KP+ +T VL A A+ + +++H V + GF + + +L+ Y C
Sbjct: 400 KAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACG 459
Query: 245 FVSRAWDLFVKML----FPWNN 262
+ A +F +ML WN+
Sbjct: 460 DLVCARSIFDEMLVKDVVSWNS 481
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+Q+ I + ++++GY+ + EA +++M+ +G+IPD ++ +CA + V
Sbjct: 988 LFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGV 1047
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
K++H ++ G D ++ + L++MYS C L++
Sbjct: 1048 LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEG 1107
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWS 228
EA+K+F +ME+E+VKPNAVT V+V TA A + +R+++ +D+ S
Sbjct: 1108 LAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVS 1167
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+VE ++ + K + A +L M F N
Sbjct: 1168 NVEHYGGMVHLFSKAGLIYEALELIGNMEFEPN 1200
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +FY+M E + P+ VT+ V++A A L K VH ++GF V + + L+
Sbjct: 1015 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 1074
Query: 238 DAYCKCKFVSRAWDLFV----KMLFPWNN 262
D Y KC + RA +F K LF WN+
Sbjct: 1075 DMYSKCGSLERALLVFFNLPKKNLFCWNS 1103
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 33/234 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADYHVRL-----VFSQISNPTIYT 92
+++CST + L+ A M++TSL F C + RL +Q+ P ++
Sbjct: 780 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFK-RLDLAVSTMTQMQEPNVFV 838
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK--SCADIYVEKQLHSQAIK 150
N++ +G+ + + Y M+ + P + + SL K S A + E L + K
Sbjct: 839 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGES-LQAHIWK 897
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
FG + TLI+ YS+ + EA K+F M + + + +++A R D
Sbjct: 898 FGFGFHVKIQTTLIDFYSATGRI---REARKVFDEMP----ERDDIAWTTMVSAYRRVLD 950
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
+ + + + E + L++ Y + +A LF VK + W
Sbjct: 951 MDSANSLANQMSE----KNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISW 1000
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 127/277 (45%), Gaps = 53/277 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL----------------FFDPCADY-HVRLVFSQISNPT 89
++KC + L+QIHA++L L P D + R +F+QI NP
Sbjct: 135 IQKCPNLHFLRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFAQIPNPG 194
Query: 90 IYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYV---EKQL 144
I+ N+I+RG + KN E + Y M+ +G + F + K+CA I +Q+
Sbjct: 195 IFPYNTIIRGCSYAKNPSREPYFLYKSMVTRGFPRANTFTMAFVLKACASIMAFEEGRQI 254
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQP 176
H++ ++ G + + ++ ++L+++Y C W +
Sbjct: 255 HARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGMV 314
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+EA+ +F M+ ++P+ V+LV V++A A A L + +H + + +EL T L
Sbjct: 315 NEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTAL 374
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273
++ Y KC + +A ++F M P + W+ S VG
Sbjct: 375 VNMYAKCGCIEKAKEIFDYM--PVKDSKAWS-SMIVG 408
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 47 LEKCSTM---RELKQIHAQMLRTSLFFDP------------CADYHV-RLVFSQISNPTI 90
L+ C+++ E +QIHA++LR+ +P C + + + VF +I+ +
Sbjct: 239 LKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNL 298
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
++++ GY + +EA + EM G+ PD + +CA + + + +H+
Sbjct: 299 VCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAY 358
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201
K + D L+ L+NMY+ C C+++ E IF M +++ K + +V +
Sbjct: 359 IKKRMIHIDLELNTALVNMYAKCGCIEKAKE---IFDYMPVKDSKAWSSMIVGL 409
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 115/262 (43%), Gaps = 55/262 (20%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFS---QISNPT--- 89
C+T+ +L QIHA +L+T L +P Y +F S PT
Sbjct: 28 CNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSY 87
Query: 90 -IYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQL 144
+ N+++R Y+ ++ +FLFY M+ G+ P++F FP + K CA I + K +
Sbjct: 88 DAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCV 147
Query: 145 HSQAIKFGLASDSFLHNTLINMY----------------------SSCWC--------LD 174
H +KFG D + NTLI+MY + W L
Sbjct: 148 HGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLG 207
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
A+ +F M++ V P+ +T+V+VL+A A L K V V++ VEL
Sbjct: 208 CSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCN 267
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
L+D + KC V +A LF +M
Sbjct: 268 ALIDMFAKCGNVDKAIKLFRQM 289
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 44/254 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP-------------TIYTC 93
+ + T+ +L Q+HA L+TSL P L S IS P ++
Sbjct: 7 IHRSKTLTQLLQLHALFLKTSLDHHPFFISQFLLQSSTISLPFAASFFHSLPTLPPLFAW 66
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N+++R + + + + L PD F +P + K+CA + + LHS +K
Sbjct: 67 NTLIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLHSLTLK 126
Query: 151 FGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKI 182
G S + N L+NMY+ C+ + + P +A +
Sbjct: 127 TGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNSPLDAFYV 186
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M +EN +PN+VTLV++L+A + +LR + +H V +G V L T L + Y K
Sbjct: 187 FREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVALGTALFEMYAK 246
Query: 243 CKFVSRAWDLFVKM 256
C + +A +F M
Sbjct: 247 CGEIDKALLVFNSM 260
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 2 AAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHA 61
A P P H T L + SPL N DN + F L + + S++ +H+
Sbjct: 75 ATPTPFHSLTLFRLLQT--SPL-NPDN---------FTYPFVLKACARSSSLPLGGTLHS 122
Query: 62 QMLRTS-------------LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHE 108
L+T ++ + A R+VF ++++ + + +S++ Y N +
Sbjct: 123 LTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNSPLD 182
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
AF + EM ++ P+ SL +C ++ V + +HS G+ D L L
Sbjct: 183 AFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVALGTALFE 242
Query: 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
MY+ C + D+A+ +F M +N++ + +++ L R +D+
Sbjct: 243 MYAKC---GEIDKALLVFNSMGDKNLQ-SCTIMISALADHGREKDV 284
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 36/216 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNL---HHEAFLFYHEMIVQGL-IPDRFMFPSLF 132
+ R +F QI PT + NS++R ++ + L Y M+ G +P+ F
Sbjct: 76 YARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 135
Query: 133 KSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC------------------- 170
K+C+ + +QLHSQA + GL ++ L+N+Y+ C
Sbjct: 136 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 195
Query: 171 --WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
W + +EA+ +F M+ +V P+ VT+V+V++A A+A L + VH
Sbjct: 196 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAF 255
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+D G +EL T L+D Y KC + RA +F M
Sbjct: 256 IDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAM 291
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 48/265 (18%)
Query: 46 SLEKCS---TMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVF-SQISNP 88
+L+ CS + E +Q+H+Q R L + C + + R VF + +
Sbjct: 134 ALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDK 193
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ ++++ GY+ + +EA + EM + PD S+ +CA + + + +H
Sbjct: 194 NLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVH 253
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+ + G+ D L LI+MY+ C +++ +
Sbjct: 254 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 313
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+K+F RM V+PN VT + VL+A A + + +R + E G +E ++
Sbjct: 314 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMV 373
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNN 262
D +C+ + A+ M P N+
Sbjct: 374 DLFCRSSLLDEAYSFVTGMAIPPNS 398
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 32/209 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCAD 137
R +F +S+P+++ N+I++ Y +K H +A + MI G PD++ FP + K+C+
Sbjct: 137 RKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSV 196
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC------------------------ 170
+ V +H +A+ G +S+ F+ N+L+ MY +C
Sbjct: 197 MSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTM 256
Query: 171 ---WCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
W + +P+EA+ +F M V+P++ T+V+ L + ++L +VHK V ++
Sbjct: 257 ISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHL 316
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+E++ L+D Y +C + A +F +
Sbjct: 317 QEKIEVRNALVDMYSRCGGIDEASLVFAE 345
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 5/208 (2%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
LVF++ + T S++ GY A M + G++P+ SL +CA +
Sbjct: 341 LVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLC 400
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLI--NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
Y+ + ++ + F + + + T+ + S + EA+ +F M IE V+ N
Sbjct: 401 YMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHA 460
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T +V+ A A DL+ V +H + SGF S + + T L+D Y KC + A +F ++
Sbjct: 461 TFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEI 520
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ W S + G+ G TA
Sbjct: 521 PNKEKDIIVW--SVLIAGYGMHGHGETA 546
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPTIYT 92
LE C+T+ LK IHA ++R FD A DY + VF QI NP ++
Sbjct: 22 LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQ-VFYQIQNPNLFI 80
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAI 149
NS +RG++ ++F FY + GL+PD +P L K+C + + Q H Q I
Sbjct: 81 YNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQII 140
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
+ G SD ++ N+L+ MYS+ L A +F R+ +V V+ +++ ++
Sbjct: 141 RHGFDSDVYVQNSLVTMYST---LGDIKSASYVFRRISCLDV----VSWTSMVAGYIKSG 193
Query: 210 DLRTVKRVHKCVDESGF--WSHVELKTTLMDAYCKCKFVSRAWDLF 253
D+ + +++ + E WS ++ Y K F +A +L+
Sbjct: 194 DVTSARKLFDKMPEKNLVTWS------VMISGYAKNSFFDKAIELY 233
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F ++ + T + ++ GY + +A Y + +G+ + + S+ SCA
Sbjct: 198 ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAH 257
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ------------ 175
+ + ++ H ++ + + L L++MY+ C W DQ
Sbjct: 258 LGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTL 317
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
++A++ F RME + P +T VL+A
Sbjct: 318 IAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSA 355
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 27 DNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA--- 74
D I N ++ Q L ++CST+++L Q+HA ++R D CA
Sbjct: 44 DTIPNGGYFAKEQKFMFL--FKQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSD 101
Query: 75 ----DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
+Y V +VF +I N + N+++RG+ AF FY M+ +G+ D F F
Sbjct: 102 HGDMNYAV-VVFDRIENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSF 160
Query: 131 LFK---SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS------------------ 169
L K I + KQLH +K GL S ++ NTLI+MY
Sbjct: 161 LLKMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTD 220
Query: 170 --CW--------CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
W +EA+ +F +M V+P+ TLV ++A + L + VH
Sbjct: 221 LVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHS 280
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
V+ + + + +L+D Y KC V A ++F K + WN
Sbjct: 281 HVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWN 326
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+Q+ I + ++++GY+ + EA +++M+ +G+IPD ++ +CA + V
Sbjct: 243 LFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGV 302
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
K++H ++ G D ++ + L++MYS C L++
Sbjct: 303 LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEG 362
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWS 228
EA+K+F +ME+E+VKPNAVT V+V TA A + +R+++ +D+ S
Sbjct: 363 LAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVS 422
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+VE ++ + K + A +L M F N
Sbjct: 423 NVEHYGGMVHLFSKAGLIYEALELIGNMEFEPN 455
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +FY+M E + P+ VT+ V++A A L K VH ++GF V + + L+
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 238 DAYCKCKFVSRAWDLFV----KMLFPWNN 262
D Y KC + RA +F K LF WN+
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNS 358
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 33/234 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYT 92
+++CST + L+ A M++TSL D C D V +Q+ P ++
Sbjct: 35 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKCLDLAVS-TMTQMQEPNVFV 93
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK--SCADIYVEKQLHSQAIK 150
N++ +G+ + + Y M+ + P + + SL K S A + E L + K
Sbjct: 94 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGE-SLQAHIWK 152
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
FG + TLI+ YS+ + EA K+F M + + + +++A R D
Sbjct: 153 FGFGFHVKIQTTLIDFYSATGGI---REARKVFDEMP----ERDDIAWTTMVSAYRRVLD 205
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
+ + + + E + L++ Y + +A LF VK + W
Sbjct: 206 MDSANSLANQMSE----KNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISW 255
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+Q+ I + ++++GY+ + EA +++M+ +G+IPD ++ +CA + V
Sbjct: 243 LFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGV 302
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
K++H ++ G D ++ + L++MYS C L++
Sbjct: 303 LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEG 362
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWS 228
EA+K+F +ME+E+VKPNAVT V+V TA A + +R+++ +D+ S
Sbjct: 363 LAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVS 422
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+VE ++ + K + A +L M F N
Sbjct: 423 NVEHYGGMVHLFSKAGLIYEALELIGNMEFEPN 455
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +FY+M E + P+ VT+ V++A A L K VH ++GF V + + L+
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 238 DAYCKCKFVSRAWDLFV----KMLFPWNN 262
D Y KC + RA +F K LF WN+
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNS 358
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 33/234 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADYHVRL-----VFSQISNPTIYT 92
+++CST + L+ A M++TSL F C + RL +Q+ P ++
Sbjct: 35 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFK-RLDLAVSTMTQMQEPNVFV 93
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK--SCADIYVEKQLHSQAIK 150
N++ +G+ + + Y M+ + P + + SL K S A + E L + K
Sbjct: 94 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGE-SLQAHIWK 152
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
FG + TLI+ YS+ + EA K+F M + + + +++A R D
Sbjct: 153 FGFGFHVKIQTTLIDFYSAT---GRIREARKVFDEMP----ERDDIAWTTMVSAYRRVLD 205
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
+ + + + E + L++ Y + +A LF VK + W
Sbjct: 206 MDSANSLANQMSE----KNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISW 255
>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
Length = 969
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 65/329 (19%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L E S + + +QIHA ++ +SL + C + R +F ++S
Sbjct: 323 LSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRDS 382
Query: 91 YTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
+ ++I+ + ++ H +A Y M+ +G++P + ++C A++ K +H+
Sbjct: 383 VSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHA 442
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------------PDEA 179
I+ GL D + +L+NMY+ C + + P EA
Sbjct: 443 HVIESGLEGD-LVGISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQEKDPHEA 501
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F M+ E V P+ +T + VL A A DL + +H + +SGF + V + T L +
Sbjct: 502 LHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALFNM 561
Query: 240 YCKCKFVSRAWDLFVKMLF----PWNNYGQWAMSATVGPQGLVGRHST----AHQISGPC 291
Y KC + A +F M+F WNN ++A V QG G + A Q+ G
Sbjct: 562 YAKCGSLGEARGVFDSMVFRDVVSWNNM----IAAYV--QGRDGEGAISLCWAMQLEGMR 615
Query: 292 PKKAHKLFFFSMLKKVHVPGVLI---QVH 317
P KA F S+L P L+ Q+H
Sbjct: 616 PDKAT---FTSLLNACSDPNRLVDGRQIH 641
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 47/253 (18%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFD-----------PCADY-HVRLVFSQISNPTIY 91
LE C ++ ELK +HA ++ + L D C R VF +I+N +
Sbjct: 425 LEACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRI 484
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQA 148
NS++ Y K+ HEA + EM +G+ PDR F ++ +C AD+ + +H++
Sbjct: 485 LWNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRI 543
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+ G A+D + L NMY+ C L + + AI
Sbjct: 544 VDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAI 603
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+ + M++E ++P+ T ++L A + L +++H + ES + + + T L+ Y
Sbjct: 604 SLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMY 663
Query: 241 CKCKFVSRAWDLF 253
C ++ A ++F
Sbjct: 664 ANCGSLNNAREIF 676
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 47/260 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRL-VFSQISNPT 89
L E S + + +QIHA ++ +SL + C + R+ F+++
Sbjct: 118 LSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRD 177
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ + ++ Y+ + + EM+++G P+ F S+ C + +Q+H+
Sbjct: 178 VVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHA 237
Query: 147 QAIKFGLAS--DSFLHNTLINMYSSCWCLDQPDE-------------------------- 178
++ L S D + N INMY C CLD +
Sbjct: 238 LVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKF 297
Query: 179 --AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++++F M +E PN+VT V++L+ L +++H V ES SHV + +L
Sbjct: 298 SLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSL 357
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
+ Y +C+ + LF +M
Sbjct: 358 LGMYSRCRSWEDSRSLFDRM 377
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 127/326 (38%), Gaps = 62/326 (19%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPT 89
L + K + E K I ++ T L D C D V+ F+++
Sbjct: 17 LTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQ-TFARMKRRD 75
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ + ++ Y+ + + EM+++G P+ F S+ C + +Q+H+
Sbjct: 76 VVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHA 135
Query: 147 QAIKFGLASDSFLHNTLINMYSSC---------------------WCL-----DQPDE-- 178
++ L S + N+L+ MYS C W + Q +
Sbjct: 136 LVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGKFS 195
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT--T 235
+I++F M +E PN+VT V++L+ L +++H V ES SH+++
Sbjct: 196 LSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNL 255
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ------ISG 289
++ Y KC + A F +M + W + +G G+ S + Q + G
Sbjct: 256 TINMYVKCGCLDGAVQTFARM--KRRDVVSW--TVMIGAYSQDGKFSLSLQLFREMLLEG 311
Query: 290 PCPKKAHKLFFFSMLKKVHVPGVLIQ 315
P + + F S+L P +L Q
Sbjct: 312 TAP---NSVTFVSILSGCEAPSLLEQ 334
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 40/230 (17%)
Query: 66 TSLF--FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
T+LF + C R VF + + + N+++ Y A M ++G+
Sbjct: 556 TALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMR 615
Query: 123 PDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE- 178
PD+ F SL +C+D + +Q+HS + L +D + LI MY++C L+ E
Sbjct: 616 PDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREI 675
Query: 179 ---------------------------------AIKIFYRMEIENVKPNAVTLVNVLTAR 205
A++++ +M V+ + VT ++VL A
Sbjct: 676 FDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNAC 735
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
A DLR + +H V G + V + +++ Y KC A +F K
Sbjct: 736 AHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASIVFEK 785
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 53/239 (22%)
Query: 119 QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
+G+ PDR M +L +C + K + + L D + N INMY C CLD
Sbjct: 4 RGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDG 63
Query: 176 PDE----------------------------AIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+ ++++F M +E PN+VT V++L+
Sbjct: 64 AVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEA 123
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD-----LFVKMLFPWNN 262
L +++H V ES SHV + +L+ Y +C R+W+ F +M +
Sbjct: 124 PSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRC----RSWEDSRMQTFARM--KRRD 177
Query: 263 YGQWAMSATVGPQGLVGRHSTAHQ------ISGPCPKKAHKLFFFSMLKKVHVPGVLIQ 315
W + +G G+ S + Q + G P + + F S+L P +L Q
Sbjct: 178 VVSW--TVMIGAYSQDGKFSLSIQLFREMLLEGTAP---NSVTFVSILSGCEAPSLLEQ 231
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 50/261 (19%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL--FFD--------------PCADYHVRLVFSQISN 87
L E S + + +QIHA ++ +SL D C D V+ F+++
Sbjct: 220 LSGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQ-TFARMKR 278
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQL 144
+ + ++ Y+ + + EM+++G P+ F S+ C + +Q+
Sbjct: 279 RDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQI 338
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC--W------------------------CLDQPD- 177
H+ ++ L S + N+L+ MYS C W C +
Sbjct: 339 HALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSH 398
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+A+ ++ M E V P + L VL A +L+ K VH V ESG + + +
Sbjct: 399 CRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDL-VGIS 457
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L++ Y KC V A +F ++
Sbjct: 458 LVNMYAKCGTVGEARKVFDRI 478
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
++ S++ Y + +A Y +M + + DR F S+ +CA D+ + +H+
Sbjct: 690 LFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHA 749
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
+ ++ GLA+D + N+++ MY C D+ ++
Sbjct: 750 RVMRRGLATDVAVANSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQ 809
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ IF R+ + ++ + +T V +L+A + + + E G ++E + L+D
Sbjct: 810 ALWIFRRLRQDGIELSNLTFVAMLSACSHVGLIEEGCEFFASMAELGIEPNMEHHSCLVD 869
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
+ + A + +M N A+ A G V R
Sbjct: 870 LLARAGHLHTAEEFLSRMPVAANTIVLTALLAACRVHGDVER 911
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 59/292 (20%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCAD------YHVRLVFSQISNP 88
L L+ C++++ L++IHA ++ + L + CA + +L+F Q+ P
Sbjct: 8 LALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECP 67
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYVE---KQL 144
NSI+RG+ + +A +FY++M+ IPD F F + K+C I E K++
Sbjct: 68 QTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEV 127
Query: 145 HSQAIKFGLASDSFLHNTLINMYSS--------------------CW-----CLDQPD-- 177
H I+ G +D + L+ YS+ W C Q
Sbjct: 128 HGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLH 187
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA++ + +M ENV + TLV ++++ A L ++H+ E+G + + L
Sbjct: 188 QEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNAL 247
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+D Y KC + +A +F +M +F WN S VG G+ GR S A
Sbjct: 248 IDMYAKCGSLDQAILIFDRMQRKDIFTWN-------SMIVG-YGVHGRGSEA 291
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 32/209 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCAD 137
R +F +S+P+++ N+I++ Y +K H +A + MI G PD++ FP + K+C+
Sbjct: 137 RKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSV 196
Query: 138 IY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC------------------------ 170
+ V +H +A+ G +S+ F+ N+L+ MY +C
Sbjct: 197 MSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTM 256
Query: 171 ---WCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
W + +P+EA+ +F M V+P++ T+V+ L + ++L +VHK V ++
Sbjct: 257 ISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHL 316
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+E++ L+D Y +C + A +F +
Sbjct: 317 QEKIEVRNALVDMYSRCGGMDEASLVFAE 345
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 33/236 (13%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LVF++ + T S++ GY A M + G++P+ SL +CA +
Sbjct: 341 LVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLC 400
Query: 140 VEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------- 173
KQ LH+ ++ L SD + LI+MY+ C +
Sbjct: 401 CLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLS 460
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ EA+ +F M IE V+ N T +V+ A A DL+ V +H + SGF S
Sbjct: 461 GLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFIS 520
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ + T L+D Y KC + A +F ++ + W S + G+ G TA
Sbjct: 521 KIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVW--SVLIAGYGMHGHGETA 574
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF+ + ++ + N+++ G+ EA ++ M+ + PD S SC
Sbjct: 239 RQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHL 298
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
++ + ++H K L + N L++MYS C +D+
Sbjct: 299 KELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMI 358
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
A+ + M+++ V PNAVTL ++L+A A L+ K +H V
Sbjct: 359 NGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLD 418
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S V + T L+D Y KC VS ++ +F K PWN
Sbjct: 419 SDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWN 456
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 106/274 (38%), Gaps = 57/274 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTI 90
L C+++ LKQ +HA ++R L D D + + VF++ S
Sbjct: 393 LSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRT 452
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQ 147
N+++ G + L EA + M+++ + + F S+ + AD+ LHS
Sbjct: 453 VPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSY 512
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD------------------------------QPD 177
++ G S + LI+MYS C LD +
Sbjct: 513 LVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGE 572
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA---RARARDLRTV-KRVHKCVDESGFWSHVELK 233
A+ +F +M ++PN +T +VL A R D T+ K + + S +H
Sbjct: 573 TAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHY--- 629
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
T ++D + + A+DL M F N+ W
Sbjct: 630 TCVVDLLGRAGRLDEAYDLIKSMPFQ-QNHSIWG 662
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 55/283 (19%)
Query: 49 KCSTMRELKQIHAQMLRTSLF-FDPCADYHVRLVFSQIS----------------NPTIY 91
+ ++M + Q+HA++L++ + + D+H FS +S P +
Sbjct: 2 EITSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSF 61
Query: 92 TCNSIVRGYTNKNLHHEAFLFY------HEMIVQGLIPDRFMFPSLFKSCAD---IYVEK 142
N+++R Y++ AF + + V PD F +P + K+C+ K
Sbjct: 62 YYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGK 121
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYS--------------------SCWCL--------D 174
Q+H K G+ SD +++N LI++YS W D
Sbjct: 122 QIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDND 181
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
+P EAI++F M ++PN VT+ +VL A A L T +R+H V E F S+ + T
Sbjct: 182 RPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVST 241
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGL 277
L+D Y KC + A ++F + L + Y A+ A + GL
Sbjct: 242 ALIDMYAKCGCIDGALEVFDETL-EKDVYVWTAIIAGLASHGL 283
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 59/292 (20%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCAD------YHVRLVFSQISNP 88
L L+ C++++ L++IHA ++ + L + CA + +L+F Q+ P
Sbjct: 8 LALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECP 67
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYVE---KQL 144
NSI+RG+ + +A +FY++M+ IPD F F + K+C I E K++
Sbjct: 68 QTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEV 127
Query: 145 HSQAIKFGLASDSFLHNTLINMYSS--------------------CW-----CLDQPD-- 177
H I+ G +D + L+ YS+ W C Q
Sbjct: 128 HGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLH 187
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA++ + +M ENV + TLV ++++ A L ++H+ E+G + + L
Sbjct: 188 QEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNAL 247
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+D Y KC + +A +F +M +F WN S VG G+ GR S A
Sbjct: 248 IDMYAKCGSLDQAILIFDRMQRKDIFTWN-------SMIVG-YGVHGRGSEA 291
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 121/287 (42%), Gaps = 57/287 (19%)
Query: 57 KQIHAQMLRTSLFFDP--CAD------------YHVRLVFSQISNPTIYTCNSIVRGYTN 102
K++HA ++RT L DP +D + LVF+QI PT+ N ++RG +
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
+ EA Y M QG+ + LFK+CA DI +++H A+K G S F+
Sbjct: 94 SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153
Query: 160 HNTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENV 191
N LI+MY+ C L ++ E +++F M N+
Sbjct: 154 SNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANI 213
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
K +AVT+V ++ A + D + K + E+ V L TL+D Y + A
Sbjct: 214 KADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQG 273
Query: 252 LFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKK 294
+F +M + WN A V VG + A ++ PK+
Sbjct: 274 VFDRMRERNIVSWN--------ALVMGHAKVGNLTAARKLFDNMPKR 312
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
++I YS Q +A+K+F M VKP+ VT+ +VL+A A L VH +
Sbjct: 319 SMITGYSQA---SQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYI 375
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G + + + +L+D YCKC V +A ++F +M
Sbjct: 376 RRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRM 410
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F + + + S++ GY+ + +A + EM+ + PD+ S+ +CA
Sbjct: 303 RKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHL 362
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ V +H + G+ +D ++ N+LI+MY C +++ A+++F+RM+ ++
Sbjct: 363 GKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEK---ALEVFHRMK----DKDS 415
Query: 196 VTLVNVLTARA 206
V+ +V++ A
Sbjct: 416 VSWTSVISGLA 426
>gi|224098349|ref|XP_002311155.1| predicted protein [Populus trichocarpa]
gi|222850975|gb|EEE88522.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 50/256 (19%)
Query: 47 LEKCSTMRELKQIH---------------AQMLRTSLFFDPCADYHVRLVFSQISNPTIY 91
L C T+ L QIH A ++++ L F C + R +F + NP++
Sbjct: 40 LSSCKTLNSLLQIHVRLTVSGLQNDHLTNAHLIKSYLLFLKCN--YARFLFDSLPNPSVM 97
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQA 148
NSI+R Y+ H EA YH M+ +GL PD++ F + K+C K+ +H
Sbjct: 98 LYNSIIRAYSRTKNHQEAINIYHCMLNKGLEPDKYTFTFVLKACTGALYFKEGILVHKDI 157
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAI 180
I GL D+F+ +L++MY L + P+E
Sbjct: 158 IVRGLERDAFIGTSLVDMYCKMGDLKLARKVFDKMPEKDVVAWSAMILGLSQSEDPNEVF 217
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
M++ V+ N V+++N++ A +R D+ + +H V GF + V L+D Y
Sbjct: 218 GFIRSMQLSGVELNLVSILNLVPAVSRLGDIDACRCIHGYVIRRGFDAIVS--NGLIDMY 275
Query: 241 CKCKFVSRAWDLFVKM 256
K + +F M
Sbjct: 276 SKSGNIDVGRQIFEYM 291
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 47/269 (17%)
Query: 53 MRELKQIHAQM----------LRTSLFFDPC---ADYHVRLVFSQISNPTIYTCNSIVRG 99
+++L+Q+HA + L T L C A + L+F + P + NS+++
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASD 156
+ L +Y M+ + P + F S+ KSCAD + + K +H A+ G D
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+++ L+ YS C ++ DEAI++FY+M
Sbjct: 142 TYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 201
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+P++ T V++L+A A+ + VH+ + G +V+L T L++ Y +C V +
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 261
Query: 249 AWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
A ++F KM N W AM + G G
Sbjct: 262 AREVFDKM--KETNVAAWTAMISAYGTHG 288
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 64/291 (21%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTS--------------LFFDPCAD-- 75
+N +S L+ L C+ M +LKQ+HAQ +RT+ L F D
Sbjct: 18 SNSDSXTHHRRLLLFLNSCTCMSQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLR 77
Query: 76 YHVRLVFSQISNPTIYTCNSIVRG---YTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSL 131
Y R VF QI NP + N+++R T++ H A YH M+ QG ++ D+ FP +
Sbjct: 78 YAFR-VFHQIENPNSFMWNALIRACARSTDRKQH--AIALYHRMLEQGSVMQDKHTFPFV 134
Query: 132 FKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-E 187
K+CA ++ +Q+H+Q +K G SB +++N+L++ Y++C D+ D A +F RM E
Sbjct: 135 LKACAYLFALSEGEQIHAQILKLGFDSBVYINNSLVHFYATC---DRLDFAKGVFDRMSE 191
Query: 188 IENVKPNAVTLVNVLTARARAR-------------DLRTVKRV-HKCVDES----GFWSH 229
V N V V A D T++ + + C G W+H
Sbjct: 192 RSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAH 251
Query: 230 --------------VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V L T+L+D YCKC + A LF +M P + W
Sbjct: 252 VFLLKKXDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRM--PKRDVTSW 300
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 50/265 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTS--------------LFFDPCAD--YHVRLVFSQISN 87
L+ L C+ + +LKQ+HAQ +RT+ L F D Y R VF QI N
Sbjct: 30 LLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFR-VFHQIEN 88
Query: 88 PTIYTCNSIVRG---YTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYV--- 140
P + N+++R T++ H A YH M+ QG ++ D+ FP + K+CA ++
Sbjct: 89 PNSFMWNALIRACARSTDRKQH--AIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSE 146
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLV 199
+Q+H+Q +K G SD +++N+L++ Y++C D+ D A +F RM E V N V
Sbjct: 147 GEQIHAQILKLGFDSDVYINNSLVHFYATC---DRLDFAKGVFDRMSERSLVSWNVVIDA 203
Query: 200 NVLTARARAR-------------DLRTVKRV-HKCVDES----GFWSHVELKTTLMDAYC 241
V A D T++ + + C G + V L T+L+D YC
Sbjct: 204 FVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDMYC 263
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266
KC + A LF +M P + W
Sbjct: 264 KCGSLELALQLFHRM--PKRDVTSW 286
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 50/270 (18%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------YHVR 79
N Q C+ L C +M +LKQI +Q+ R L D CAD +
Sbjct: 92 NLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAE 151
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
+F+ + +P+++ N +V+ Y + + + L + ++ GL PD F +P + K+
Sbjct: 152 KIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLR 211
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMY--------------------SSCWCL--- 173
D+ +++ +K G+ D++++N+LI+MY S W +
Sbjct: 212 DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 271
Query: 174 -----DQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGF 226
+ ++AI F M+ E N KP+ T+V+ L+A ++L +H V E GF
Sbjct: 272 GYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGF 331
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++ L+D Y KC ++ A ++F +M
Sbjct: 332 TTRID--NALLDMYAKCGCLNIARNIFDEM 359
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 130 SLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
S + +C D+ + L ++ D L +IN Y D+A+ +F M+I+
Sbjct: 372 SGYINCGDLREARDLFDKSP----VRDVVLWTAMINGYVQ---FHHFDDAVALFREMQIQ 424
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
+KP+ T+V +LT A+ L K +H +DE+ V + T L++ Y KC V ++
Sbjct: 425 KIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 484
Query: 250 WDLFVKM 256
++F ++
Sbjct: 485 LEIFYEL 491
>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
Length = 667
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 35/197 (17%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---L 144
P + NS++R YT H EA Y M D FP K+CA + + + +
Sbjct: 75 PPVSFSNSLLRSYTGLGCHREALAVYSAMRAF----DHLTFPFAAKACAGLRLGRHGRAV 130
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ--P 176
H +A+ G D+++ N LI+MY SC W C+
Sbjct: 131 HCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYA 190
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+ A+++F M + V + T+V+VL A A+A+DL T + VH+ V++ G +V +K L
Sbjct: 191 ERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNAL 250
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y KC+ + A +F
Sbjct: 251 IDMYGKCRSLEDARRVF 267
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 78 VRLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
R VF + + + +++ Y + EA +M++ G P+ L +C
Sbjct: 263 ARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSAC 322
Query: 136 ADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSC--------------WCLD---- 174
A + K H+ I+ GL SD + LI+ Y+ C W +
Sbjct: 323 ASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETWNA 382
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ +AI++F RM E+V+P++ T+ ++L A A + DL+ K +H + G
Sbjct: 383 ALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLG 442
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
F E+ T L+D Y K + AW LF
Sbjct: 443 FLRSTEIATGLIDVYSKAGDLDAAWALF 470
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 31/144 (21%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQA 148
T N+ + GYT +A + MI + + PD S+ + AD+ K +H
Sbjct: 379 TWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFL 438
Query: 149 IKFGLASDSFLHNTLINMYS------SCWCLDQ--PDE--------------------AI 180
+ G + + LI++YS + W L Q P++ AI
Sbjct: 439 LTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAI 498
Query: 181 KIFYRMEIENVKPNAVTLVNVLTA 204
++ RM KPN VT+ +L A
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYA 522
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 50/271 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------YHVRLVFSQISN 87
C+ L+ C +M LKQIHAQ+ R L D C D + +F I
Sbjct: 40 CISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRY 99
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQL 144
P + N I++ + K + + + ++ GL PD F +P +FK+ ++ ++L
Sbjct: 100 PCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKL 159
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLD--------QPD------------------- 177
K GL D+++ N+LI+MY+ D PD
Sbjct: 160 RGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRF 219
Query: 178 -EAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+AI +F RM+ E + P+ T+V+ L+A + L K++H V ++ ++ + +
Sbjct: 220 EDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPI-IGNA 278
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
L+D YCKC +S A +F +M P N W
Sbjct: 279 LLDMYCKCGCLSIARAVFEEM--PSKNVICW 307
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D + +IN Y ++ DEA+ +F M+I VKP+ +V++LT A+ + K
Sbjct: 334 DVVIWTAMINGYVQ---FNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGK 390
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+H+ +DE+ + T L++ Y KC F+ +A ++F
Sbjct: 391 WIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIF 428
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 33/153 (21%)
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
S I + I+T +++ GY N EA + EM ++ + PD+F+ SL CA I
Sbjct: 330 SPIRDVVIWT--AMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIE 387
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE--------------------- 178
K +H + + D+ + LI MY+ C +++ E
Sbjct: 388 QGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLA 447
Query: 179 -------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A+++F +M+ V+P+ +T + VL+A
Sbjct: 448 MNGKTSKALELFSKMKQAGVRPDDITFIGVLSA 480
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 114/269 (42%), Gaps = 56/269 (20%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD--------------------PCADYHVRLVFS 83
L L C+++R L Q+HA ++ P + R VF
Sbjct: 32 LAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFD 91
Query: 84 QISNPT-IYTCNSIVRGYTNKNLH----HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+I +P + N+++RGY EA + M+ +G+ PD + F SL K+CA
Sbjct: 92 RIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASA 151
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW---------------CL------- 173
+Q H A+K G A ++ TLINMY+ C C+
Sbjct: 152 RAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
P EA+ +F M+ + +KP +VTL++VL+A A L + +H + +
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLD 271
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S V++ T L+D Y KC + A +F M
Sbjct: 272 SLVKVNTALIDMYAKCGSLEDAIGVFQDM 300
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 63 MLRTSLFFDPCADYHVRLVFSQ-------ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115
+LR+ + +P H RL+ Q I+NP++ NS++R Y+ +L EA Y
Sbjct: 58 LLRSCKYLNPLLQIHARLIVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQT 117
Query: 116 MIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M GL PD++ F + K+C D + +H L D F+ L++MY
Sbjct: 118 MSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGH 177
Query: 173 LD----------------------------QPDEAIKIFYRMEI-ENVKPNAVTLVNVLT 203
LD P EA++IF RM++ E V+P++V+++N+
Sbjct: 178 LDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAP 237
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A +R D+ + K +H V + V +L+D Y KC V A +F +M
Sbjct: 238 AVSRLEDVDSCKSIHGYVVRRCVFGVV--SNSLIDMYSKCGEVKLAHQIFDQM 288
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 49/262 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F+++ + N+++ G+T A + + + G+ PD SL +CA D
Sbjct: 486 LFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDD 545
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------DQ-------- 175
+Y+ H IK G+ S+ + LI+MY+ C L D+
Sbjct: 546 LYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIA 605
Query: 176 -------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+EAI F +M++E+V+PN VT V +L A + LR H C+ GF S
Sbjct: 606 GYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFIS 665
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQIS 288
+ +L+D Y K +S + F +M N G + +A + + G+ A
Sbjct: 666 STLIGNSLIDMYAKSGQLSYSEKCFHEM----ENKGTISWNAMLSGYAMHGQGEVA---- 717
Query: 289 GPCPKKAHKLFFFSMLKKVHVP 310
L FS++++ HVP
Sbjct: 718 ---------LALFSLMQETHVP 730
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 50/254 (19%)
Query: 57 KQIHAQMLRTSLF----------FDPCADYHVRL---VFSQISNPTIYTCNSIVRGYTNK 103
K IH ++R +F + C + V+L +F Q+ + +++ GY +
Sbjct: 249 KSIHGYVVRRCVFGVVSNSLIDMYSKCGE--VKLAHQIFDQMWVKDDISWATMMAGYVHH 306
Query: 104 NLHHEAFLFYHEMIVQGLIPDRF-MFPSLFKSCA--DIYVEKQLHSQAIKFGLASDSFLH 160
+ E EM + + ++ + S+ + D+ K++H+ A++ G+ SD +
Sbjct: 307 GCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVA 366
Query: 161 NTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENVK 192
+++MY+ C L + P EA+ IF M+ E +K
Sbjct: 367 TPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLK 426
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ L ++++A A R K +H V ++ S + + TTL+ Y +CK A L
Sbjct: 427 PDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTL 486
Query: 253 FVKM----LFPWNN 262
F +M + WN
Sbjct: 487 FNRMHYKDVVAWNT 500
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 44/226 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSC 135
+ R VF ++ + + N+++ G + + EA + M + +G+ PD +L +
Sbjct: 180 NARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAV 239
Query: 136 A---DIYVEKQLHSQAIK---FGLASDSFLHNTLINMYSSC-------------WCLDQP 176
+ D+ K +H ++ FG+ S N+LI+MYS C W D
Sbjct: 240 SRLEDVDSCKSIHGYVVRRCVFGVVS-----NSLIDMYSKCGEVKLAHQIFDQMWVKDDI 294
Query: 177 D---------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
E +++ M+ +++K N +++VN + A RDL K VH
Sbjct: 295 SWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYA 354
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY 263
+ G S + + T ++ Y KC + +A + F+ + L W+ +
Sbjct: 355 LQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAF 400
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 131 LFKSCADIYVEKQLHSQAI--KFGLASDSF------LHNTLINMYSSCWCLDQPDEAIKI 182
L +SC + Q+H++ I + LA +S L N+LI YS L EAIK
Sbjct: 58 LLRSCKYLNPLLQIHARLIVQQCTLAPNSITNPSLILWNSLIRAYSR---LHLFQEAIKS 114
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+ M ++P+ T VL A A D +H+ + V + T L+D YCK
Sbjct: 115 YQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCK 174
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW 266
+ A +F KM P + W
Sbjct: 175 MGHLDNARKVFDKM--PGKDVASW 196
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 24/156 (15%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTIYTC 93
C TM++LKQ+HAQM++T+ DP A DY R +F + P ++
Sbjct: 21 CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDY-ARKIFRSMHRPNCFSY 79
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCAD---IYVEKQLHSQAI 149
N+++R + N +A L + EM+ + P+ F FPS+FK+C + +Q+H A+
Sbjct: 80 NTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAV 139
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
KFGL SD F+ + ++ MY SC + ++A ++FYR
Sbjct: 140 KFGLDSDEFVVSNVVRMYLSCGVM---EDAHRLFYR 172
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M++ V PN VTLV+VL A +R L K VH + L + L+
Sbjct: 242 EAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALI 301
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
D Y KC + +A +F + P N W+
Sbjct: 302 DMYAKCGSIEKALQVFEGL--PKRNVVTWS 329
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 37/164 (22%)
Query: 129 PSLFKSCADIYVEKQLHSQAIK---------------FGLASD----------------- 156
PS F C + KQLH+Q IK F SD
Sbjct: 15 PSSFFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRP 74
Query: 157 -SFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTV 214
F +NTLI S + P +A+ +F M E +V+PN T +V A RA LR
Sbjct: 75 NCFSYNTLIRALSES---NDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREG 131
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
++VH + G S + + ++ Y C + A LF + +F
Sbjct: 132 RQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVF 175
>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
Length = 667
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 35/197 (17%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---L 144
P + NS++R YT H EA Y M D FP K+CA + + + +
Sbjct: 75 PPVSFSNSLLRSYTGLGCHREALAVYSAMRAF----DHLTFPFAAKACAGLRLGRHGRAV 130
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ--P 176
H +A+ G D+++ N LI+MY SC W C+
Sbjct: 131 HCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYA 190
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+ A+++F M + V + T+V+VL A A+A+DL T + VH+ V++ G +V +K L
Sbjct: 191 ERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNAL 250
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y KC+ + A +F
Sbjct: 251 IDMYGKCRSLEDARRVF 267
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 78 VRLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
R VF + + + +++ Y + EA +M++ G P+ L +C
Sbjct: 263 ARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSAC 322
Query: 136 ADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSC--------------WCLD---- 174
A + K H+ I+ GL SD + LI+ Y+ C W +
Sbjct: 323 ASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETWNA 382
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ +AI++F RM E+V+P++ T+ ++L A A + DL+ K +H + G
Sbjct: 383 ALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLG 442
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
F E+ T L+D Y K + AW LF
Sbjct: 443 FLRSTEIATGLIDVYSKAGDLDAAWALF 470
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 31/144 (21%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQA 148
T N+ + GYT +A + MI + + PD S+ + AD+ K +H
Sbjct: 379 TWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFL 438
Query: 149 IKFGLASDSFLHNTLINMYS------SCWCLDQ--PDE--------------------AI 180
+ G + + LI++YS + W L Q P++ AI
Sbjct: 439 LTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAI 498
Query: 181 KIFYRMEIENVKPNAVTLVNVLTA 204
++ RM KPN VT+ +L A
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYA 522
>gi|147772239|emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]
Length = 901
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 81/303 (26%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQI 85
+++ CL L+ C MR+L QI A ++ + LF P ADY + L+F I
Sbjct: 371 RSNSCLALLKTCRNMRQLSQIQAYLIISGLFRKPFVASKVLKVSADYADVNYTILIFRSI 430
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVE 141
+P N++++ Y+ ++ H+A +FY E + G + + F FP LF C Y E
Sbjct: 431 DSPDTVCVNAVIKAYSISSVAHQALVFYFETLRNGFMCNSFTFPPLFSCCRKXGCVEYGE 490
Query: 142 KQLHSQAIKFGL-----ASDSFLH--------------------------NTLINMYSS- 169
K H QAIK G+ +S +H N++I+ Y+
Sbjct: 491 K-FHGQAIKNGVDNVLDVQNSMVHMYGCCGVVEXAEKVFGEMSKRDLVSWNSIIDAYAKL 549
Query: 170 -------------------CWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVL 202
W + P A+K+F M ++ T+V+VL
Sbjct: 550 GHLVLAHRLFDAMPERNAVSWNIMMGGYLKGGNPGCALKLFREMANAGLRGGETTMVSVL 609
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LF 258
TA R+ L+ + +H + + S + L T L+D Y KC+ V A ++ +M L
Sbjct: 610 TACCRSARLKEGRSIHGVLIRTFLKSSLILDTALIDMYSKCERVDVARVVYDRMTKXNLV 669
Query: 259 PWN 261
WN
Sbjct: 670 CWN 672
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 46/252 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHVRLVFSQIS-NPTIYTC 93
L++ T L Q+H+ +L+T+ +P + RLVF ++ I+
Sbjct: 9 LQRSKTTTHLLQLHSLILKTAKDHNPDLISQFIFSISSVSIEFARLVFDRLPIRAPIFAW 68
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
NSI+R YT ++ EA + +M GL PD F +P + K+C + +HS +K
Sbjct: 69 NSIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVK 128
Query: 151 FGLASDSFLHNTLINMYSS--------------------CW---------CLDQPDEAIK 181
G SD ++ NTL+ MY++ W C Q D A+
Sbjct: 129 AGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQAD-ALM 187
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M + N KPN+VTLV++L+A R ++ + +H + + V L T +++ Y
Sbjct: 188 VFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEMYS 247
Query: 242 KCKFVSRAWDLF 253
KC + +A +F
Sbjct: 248 KCGHIEKALKVF 259
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF++++ + + +S++ GY N +A + + M++ P+ SL +C
Sbjct: 155 RRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACTRL 214
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+I V + +HS I + D L ++ MYS C W +
Sbjct: 215 LNIGVGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMI 274
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
++AI +F +ME ++P++++ +L+A
Sbjct: 275 SGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSA 311
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 50/257 (19%)
Query: 51 STMRELKQIHAQMLRTS------------LFF-----DPCADYHVRLVFSQISNP-TIYT 92
S++ +L+QIHA +R +F+ P + VFS+I P ++
Sbjct: 28 SSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYVEKQLHSQA 148
N+++RGY A Y EM G + PD +P L K+ AD+ + + +HS
Sbjct: 88 WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVV 147
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAI 180
I+ G S ++ N+L+++Y++C + +P+EA+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ M+++ +KP+ T+V++L+A A+ L KR H + + G ++ L+D Y
Sbjct: 208 ALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLY 267
Query: 241 CKCKFVSRAWDLFVKML 257
+C V A LF +M+
Sbjct: 268 ARCGRVEEAKTLFDEMV 284
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL----FF----------DPCAD--YHVRLVFSQ 84
H L L CS+ L +IHAQ+L + L FF P + Y L+F
Sbjct: 31 HQLLSLLNHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHC 90
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---E 141
+ N I+RGY++ + EA + EM +G+ P+ FP L K+CA +
Sbjct: 91 HFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEG 150
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ 175
KQ H+ AIK GL D ++ NTLI Y SC W C++
Sbjct: 151 KQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVEN 210
Query: 176 --PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
DEAI F +M +P+ T+V +L+A A +L + VH V G +V+L
Sbjct: 211 FCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLG 270
Query: 234 TTLMDAYCKCKFVSRAWDLF 253
T +D Y K V A +F
Sbjct: 271 TAFVDMYAKSGDVGCARHVF 290
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 44/211 (20%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNP 88
F L + +T++E KQ HA ++ L F+ C R VF +++
Sbjct: 136 FLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTER 195
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
T+ + N+++ EA ++ +M G PD + +CA+ + + + +H
Sbjct: 196 TLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVH 255
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW----------CLDQ------------------PD 177
SQ + G+ + L ++MY+ CL Q +
Sbjct: 256 SQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFAN 315
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
EAI++F M + PN VT + VL A + A
Sbjct: 316 EAIELFTNMMSSPIVPNHVTFIGVLCACSHA 346
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA--------SDSFLHN 161
F + +++V GL D F L + V S+ + +G + S + N
Sbjct: 47 FEIHAQILVSGLQNDSFFTTELLR------VAALSPSRNLSYGCSLLFHCHFHSATMPWN 100
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+I YSS D P EAI +F M V+PN +T +L A A L+ K+ H
Sbjct: 101 FIIRGYSSS---DSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIA 157
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ G V ++ TL+ Y CK +S A +F +M L WN
Sbjct: 158 IKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWN 201
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 34/213 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP--DRFMFPSLFKSCA 136
R +F QI +PT + NS++R L + ++++ P + F K+CA
Sbjct: 78 RTLFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACA 137
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------QPD------- 177
+ +QLH+QA++ GL + +++ L+N+Y+ C + PD
Sbjct: 138 AVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWS 197
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EA+ +F M+ V+P+ VT+V V++A A+A L K VH +D
Sbjct: 198 AMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRK 257
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G +EL T L+D Y KC + RA +F M+
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAMV 290
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 107/259 (41%), Gaps = 48/259 (18%)
Query: 46 SLEKCSTM---RELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQIS-NP 88
+L+ C+ + E +Q+HAQ LR L + C + R VF ++ +
Sbjct: 132 ALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDK 191
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
++ ++++ GY+ + EA + EM G+ PD + +CA + + K +H
Sbjct: 192 SLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVH 251
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+ + G+ D L LI+MY+ C +++ +
Sbjct: 252 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 311
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F RM V+PN VT + VL+A A + + +R + G +E ++
Sbjct: 312 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQNLGIKPSMENYGCMI 371
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D C+ + A+ + M
Sbjct: 372 DLLCRSGLLDDAYSFVIDM 390
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 48/243 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
L + +R+L QI+A +L T F + SNP + N+I+R YT
Sbjct: 34 LSNTTRIRDLNQIYAHILLTR-FLE--------------SNPASFNWNNIIRSYTRLESP 78
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTL 163
A Y M+ G++PDR+ P + K+ + I + +Q+HS IK GL S+ + +
Sbjct: 79 QNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGF 138
Query: 164 INMYSSCWCLDQP----DE------------------------AIKIFYRMEIENVKPNA 195
IN+Y D DE AI +F M+ +P+
Sbjct: 139 INLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDG 198
Query: 196 VTLVNVLTARARARDLRTVKRVHKCV--DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+T+V+V++A DL ++HK V ++ W+ + + +L+D Y KC + A+++F
Sbjct: 199 ITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVF 258
Query: 254 VKM 256
M
Sbjct: 259 ATM 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 33/157 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + P + + N+++ G + L +A + + +M G PD S+ +C D
Sbjct: 154 VFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIGD 213
Query: 138 IYVEKQLHSQAI--KFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+Y+ QLH K + + N+LI+MY C +D
Sbjct: 214 LYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMI 273
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ F+ M VKPN VT + VL+A
Sbjct: 274 VGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSA 310
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF +++ + + NSI+ GY + L + + +M+ G+ D S+F CAD
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCAD 308
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------- 175
I + + +H +K + + NTL++MYS C LD
Sbjct: 309 SRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSM 368
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+K+F ME E + P+ T+ VL AR R L KRVH+ + E+
Sbjct: 369 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDM 428
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + LMD Y KC + A +F VK + WN
Sbjct: 429 GFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWN 467
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 44/225 (19%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D ++VF ++S ++ + S++ GY + L EA + EM +G+ PD +
Sbjct: 341 YSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 129 PSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
++ CA + K++H + + D F+ N L++MY+ C + EA +F
Sbjct: 401 TAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSM---REAELVFSE 457
Query: 186 MEIENV---------------KPNAVTLVNVLTARAR-ARDLRTV--------------- 214
M ++++ A++L N+L R + D RTV
Sbjct: 458 MRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDK 517
Query: 215 -KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ +H + +G++S + +L+D Y KC + L ++LF
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL-----LLARLLF 557
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 27/240 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLF------------FDPCADYHVRL-VFSQISNPTI 90
L L KC+ +K++HAQ+++ +L F C ++ + VF+QI +P +
Sbjct: 27 LQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNV 86
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+++R + + +AF + +M GL D F +P L K+C + + +H
Sbjct: 87 HLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCH 146
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
K+G D F+ N+LI+ YS C L + A+K+F M + + V+ +++ +
Sbjct: 147 VEKYGFFGDLFVPNSLIDSYSKCGLLG-VNYAMKLFMEMG----EKDLVSWNSMIGGLVK 201
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
A DL R K DE V T++D Y K +S+A++LF KM P N W+
Sbjct: 202 AGDL---GRARKLFDEMAERDAVSW-NTILDGYVKAGEMSQAFNLFEKM--PERNVVSWS 255
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 20/192 (10%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R +F +++ + N+I+ GY +AF + +M + ++ M K+
Sbjct: 208 ARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDM 267
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
A + +K + + + F L EA ++ +ME +KP
Sbjct: 268 EMARMLFDKMPFKNLVTWTIIISGFAEKGL------------AKEATTLYNQMEAAGLKP 315
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ TL+++L A A + L K+VH + + V + L+D Y KC V +A +F
Sbjct: 316 DDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIF 375
Query: 254 VKM----LFPWN 261
+M L WN
Sbjct: 376 NEMSMRDLVSWN 387
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 36/219 (16%)
Query: 74 ADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH---EAFLFYHEMIVQGL-IPDRFMFP 129
A + R +F QI PT + NS++R ++ + L Y M+ G +P+ F
Sbjct: 76 APSYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLA 135
Query: 130 SLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------- 170
K+C+ + +QLHSQA + GL ++ L+N+Y+ C
Sbjct: 136 FALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGD 195
Query: 171 -----WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
W + +EA+ +F M+ +V P+ VT+V+V++A A+A L + V
Sbjct: 196 KNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWV 255
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H +D G +EL T L+D Y KC + RA +F M
Sbjct: 256 HAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAM 294
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 48/265 (18%)
Query: 46 SLEKCS---TMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVF-SQISNP 88
+L+ CS + E +Q+H+Q R L + C + + R VF + +
Sbjct: 137 ALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDK 196
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ ++++ GY+ + +EA + EM + PD S+ +CA + + + +H
Sbjct: 197 NLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVH 256
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+ + G+ D L LI+MY+ C +++ +
Sbjct: 257 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 316
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+K+F RM V+PN VT + VL+A A + + +R + E G +E ++
Sbjct: 317 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMV 376
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNN 262
D +C+ + A+ M P N+
Sbjct: 377 DLFCRSSLLDEAYSFVTGMAIPPNS 401
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 32/214 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R+VF QI P + N+I+ G+ EA F+ +M QGLIPD SL +C
Sbjct: 320 ARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTS 379
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W-- 171
+++Y Q+H K GL D + NTL+ MY+ C W
Sbjct: 380 PSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNA 439
Query: 172 ----CL--DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+ DQ +E ++ M I +P+ +TL NVL A A + +VH ++G
Sbjct: 440 ILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTG 499
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ L+D Y KC + A +F M+ P
Sbjct: 500 LNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINP 533
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISNPTI 90
++ CS++ ++ +Q+HA +L++ S++ VFS+++ +
Sbjct: 171 IKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDL 230
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIY---VEKQLHS 146
+ S++ G++ EA ++ EM+ QG+ +P+ F+F S+F +C+ + +QLH
Sbjct: 231 ISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHG 290
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------E 178
+IKFGL D F +L +MY+ C L +PD E
Sbjct: 291 MSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKE 350
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
AI F +M + + P+ +T+ ++L A +L +VH +++ G V + TL+
Sbjct: 351 AIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLT 410
Query: 239 AYCKCKFVSRAWDLFVKM-----LFPWN 261
Y KC + A F +M L WN
Sbjct: 411 MYAKCSELRDAIFFFEEMRCNADLVSWN 438
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 58/283 (20%)
Query: 37 QYQAHFCLVS------LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV--------- 78
Q + FCL + CS +R L K+IH ML++ D H+
Sbjct: 54 QKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKS 113
Query: 79 ----RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ VF + + + S++ GY+ A FY +M+ G++PD+F F S+ K+
Sbjct: 114 LKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKA 173
Query: 135 C---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS-SCWCLDQPD------------- 177
C DI + +QLH+ +K + N LI+MY+ S +D D
Sbjct: 174 CSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISW 233
Query: 178 --------------EAIKIFYRMEIENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EA+ F M + V PN +V +A + +++H
Sbjct: 234 GSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSI 293
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ G V +L D Y KC +S A +F ++ L WN
Sbjct: 294 KFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWN 336
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
N + + N+I+ + E F M + PD ++ + A+ I + Q
Sbjct: 431 NADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQ 490
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---------------- 177
+H A+K GL D+ + N LI++Y+ C L PD
Sbjct: 491 VHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGY 550
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+K+F M +VKPN VT V VLTA
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTA 579
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+Q+ I + +++ GY+ + EA +++M+ +G+IPD ++ +CA + V
Sbjct: 995 LFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGV 1054
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
K++H ++ G D ++ + L++MYS C L++
Sbjct: 1055 LEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEG 1114
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWS 228
EA+K+F +ME+E+VKPN VT V+V TA A + +R+++ +D+ S
Sbjct: 1115 LAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVS 1174
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+VE ++ + K + A +L M F N
Sbjct: 1175 NVEHYGCMVHLFSKAGLIYEALELIGSMEFEPN 1207
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
T+IN YS + EAI +FY+M E + P+ VT+ V++A A L K VH
Sbjct: 1009 TMINGYSRN---KRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 1065
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
++GF V + + L+D Y KC + RA +F K LF WN+
Sbjct: 1066 VQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 1110
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTS---------LFFDPCADYHVRL-----VFSQISNPTIYT 92
+++CST + L+ A M++TS F C+ ++ RL +Q+ P ++
Sbjct: 787 IKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSFN-RLDLAVSFMTQMQKPNVFV 845
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYVEKQLHSQAIKF 151
N++++G+ + + FY M+ + P + + SL ++ A + L + KF
Sbjct: 846 YNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFASGFGESLQAHIWKF 905
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
G + TLI YS+ + EA K+F M + + VT +++A + D+
Sbjct: 906 GFGFHVQIQTTLIGFYSAS---GRIREARKVFDEMP----ERDDVTWTTMVSAYRQVLDM 958
Query: 212 RTVKRVHKCVDE--SGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
+ + + E W+ L+D Y + + A LF VK + W
Sbjct: 959 DSANSLANQMPEKNEATWN------CLIDGYTRLGNLELAESLFNQMPVKDIISW 1007
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 34/230 (14%)
Query: 54 RELKQIHAQMLRTSLFFDP------CADY---------HVRLVFSQISNPTIYTCNSIVR 98
+E++Q+HA L+T++F P A Y + R +F +I ++ N+I++
Sbjct: 27 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS 155
Y H+ + +HE+ V +PD F P + K CA + V KQ+H A+K G S
Sbjct: 87 CYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 145
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D F+ +L+NMYS C + D A K+F M + + V +++ AR ++
Sbjct: 146 DVFVQGSLVNMYSKC---GEIDCARKVFDGM----IDKDVVLWNSLIDGYARCGEIDIAL 198
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++ + + E +S T L+D KC V A LF +M L WN
Sbjct: 199 QLFEEMPERDAFSW----TVLVDGLSKCGKVESARKLFDQMPCRNLVSWN 244
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 59/276 (21%)
Query: 49 KCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNS 95
+ ++E KQIH L+ + C + R VF + + + NS
Sbjct: 124 RLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNS 183
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP-----SLFKSCADIYVEKQLHSQAIK 150
++ GY A + EM P+R F C + ++L Q
Sbjct: 184 LIDGYARCGEIDIALQLFEEM------PERDAFSWTVLVDGLSKCGKVESARKLFDQMPC 237
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDE----------------------------AIKI 182
L S N +IN Y D E A+K+
Sbjct: 238 RNLVS----WNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKM 293
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F+ M +P+ TLV+VL+A + L + +H ++++GF L T+L++ Y K
Sbjct: 294 FFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAK 353
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
C + A +F + G W A+ +G G+
Sbjct: 354 CGCIESALTVFRAI--QKKKVGHWTAIIVGLGIHGM 387
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 40/199 (20%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLF--------FDPCADYHVRL-VFSQISNPTIYTCNSI 96
L KC + +++ QM +L + D+ L +F Q+ + T N +
Sbjct: 218 GLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLM 277
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGL 153
+ GY +A + M+ G P S+ + + + V + +HS K G
Sbjct: 278 IAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGF 337
Query: 154 ASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYR 185
D L +LI MY+ C C++ + A+ +F
Sbjct: 338 ELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLE 397
Query: 186 MEIENVKPNAVTLVNVLTA 204
M +KPNA+ + VL A
Sbjct: 398 MCKTGLKPNAIIFIGVLNA 416
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 42/247 (17%)
Query: 53 MRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP--TIYTCNSIVRGYTNKNLHHEAF 110
+R I +++LR F D H VF ++ N + + NS++ GY L+ +A
Sbjct: 85 LRRNVGISSKLLRLYASFGYMEDAHQ--VFDEMGNRNFSAFAWNSLISGYAELGLYEDAL 142
Query: 111 LFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMY 167
Y +M +G+ PD F FP + K+C I + + +H ++ G A D F+ N L++MY
Sbjct: 143 ALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMY 202
Query: 168 SSCWCL-------DQPD---------------------EAIKIFYRMEIENVKPNAVTLV 199
S C C+ DQ + EA+ IF +M E +P++V L
Sbjct: 203 SKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALS 262
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM--- 256
+L+ ++ +H V G ++ + +L+ Y KC ++RA LF +M
Sbjct: 263 TLLS---NISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQK 319
Query: 257 -LFPWNN 262
+ WN+
Sbjct: 320 DMVSWNS 326
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF QI I + NS++ GYT LH EA + +MI +G PD +L + + +
Sbjct: 212 RKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSM 271
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ---------------- 175
+ +H I+ G+ + + N+LI MY+ C W Q
Sbjct: 272 KFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAH 331
Query: 176 --PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWSHVEL 232
EA+ F ME V P+ VT V++L+ A ++ ++ + + G +E
Sbjct: 332 FNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIEH 391
Query: 233 KTTLMDAYCKCKFVSRAWDLFVK 255
+++ Y + + A+ + K
Sbjct: 392 YACMVNLYGRAGMIEEAYKIITK 414
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 42/247 (17%)
Query: 53 MRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP--TIYTCNSIVRGYTNKNLHHEAF 110
+R I +++LR F D H VF ++ N + + NS++ GY L+ +A
Sbjct: 85 LRRNVGISSKLLRLYASFGYMEDAHQ--VFDEMGNRNFSAFAWNSLISGYAELGLYEDAL 142
Query: 111 LFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMY 167
Y +M +G+ PD F FP + K+C I + + +H ++ G A D F+ N L++MY
Sbjct: 143 ALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMY 202
Query: 168 SSCWCL-------DQPD---------------------EAIKIFYRMEIENVKPNAVTLV 199
S C C+ DQ + EA+ IF +M E +P++V L
Sbjct: 203 SKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALS 262
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM--- 256
+L+ ++ +H V G ++ + +L+ Y KC ++RA LF +M
Sbjct: 263 TLLS---NISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQK 319
Query: 257 -LFPWNN 262
+ WN+
Sbjct: 320 DMVSWNS 326
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF QI I + NS++ GYT LH EA + +MI +G PD +L + + +
Sbjct: 212 RKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSM 271
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ---------------- 175
+ +H I+ G+ + + N+LI MY+ C W Q
Sbjct: 272 KFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAH 331
Query: 176 --PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWSHVEL 232
EA+ F ME V P+ VT V++L+ A ++ +++ + + G +E
Sbjct: 332 FNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEH 391
Query: 233 KTTLMDAYCKCKFVSRAWDLFVK 255
+++ Y + + A+ + K
Sbjct: 392 YACMVNLYGRAGMIEEAYKIITK 414
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 54/279 (19%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQM-----------------LRTSLFFDPCA 74
N S H L L C+++R L Q+HA L T P
Sbjct: 17 NKPKSAAPQHPLLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAH 76
Query: 75 DYHVRLVFSQISNPTIYT-CNSIVRGYTNKNLHHEAFL-----FYHEMIVQGLIPDRFMF 128
+ R VF +++ P+ N+++RGY + + + M+ +G+ PD + F
Sbjct: 77 LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTF 136
Query: 129 PSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------- 171
SL K+CA +Q H+ A+K G A ++ TLINMY+ C
Sbjct: 137 VSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADG 196
Query: 172 -CL-------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
C+ +P EA+ +F M+ + + P VT+++VL+A A L+ + +
Sbjct: 197 DCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWL 256
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H V + G S V++ T L+D Y KC + A +F M
Sbjct: 257 HDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGM 295
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R+ F + + + N+++ + EA + + EM +GL P
Sbjct: 177 MYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVT 236
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
S+ +CA + + + LH K GL S + L++MY+ C L ++AI +F
Sbjct: 237 VISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSL---EDAIAVFQ 293
Query: 185 RMEIENVKPNAVTLV 199
ME + + +V +V
Sbjct: 294 GMESRDRQAWSVMIV 308
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 122/277 (44%), Gaps = 48/277 (17%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRL 80
I S H + LE C++M+EL Q +++ SLF + +
Sbjct: 71 IPSHVYKHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAAR 130
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I + +++++GY + +A F+ M G+ P + F L K C AD
Sbjct: 131 VFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNAD 190
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PDE----------- 178
+ K++H Q I G AS+ F ++NMY+ C +++ P+
Sbjct: 191 LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISG 250
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A+++ RM+ E +P+++T+V++L A A LR + +H +GF S
Sbjct: 251 YAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESF 310
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + T L+D Y KC V A +F +M + WN+
Sbjct: 311 VNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNS 347
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 40/234 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RL+F +++ T+ + NS++ GY A + +M+ + + +CAD+
Sbjct: 331 RLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADL 390
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+Q +H + L SD + N+LI+MYS C +D
Sbjct: 391 GDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMI 450
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ +EAI F +M+++N+KP++ T+V+V+ A A L K +H V +
Sbjct: 451 LGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLD 510
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
+V + T L+D Y KC V A LF M + WN AM G GL
Sbjct: 511 KNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWN-----AMIDGYGTHGL 559
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 48/259 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHV-------RLV------FSQISNPTIYTCNSIV 97
+ +R+ K+IH Q++ + A V RLV F ++ + N+I+
Sbjct: 189 ADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTII 248
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLA 154
GY A M +G PD S+ + AD+ + + +H +++ G
Sbjct: 249 SGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFE 308
Query: 155 SDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRM 186
S + L++MYS C + P A++IF +M
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKM 368
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E V+ VT++ L A A D+ + VHK +D+ S V + +L+ Y KCK V
Sbjct: 369 MDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRV 428
Query: 247 SRAWDLFV----KMLFPWN 261
A ++F K L WN
Sbjct: 429 DIAAEIFENLQHKTLVSWN 447
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 30/268 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL----FFDPCADYHVRL---------VFSQISNPTI 90
L L KCS + + QIHAQ+L+ +L F P L VF+ + +P +
Sbjct: 25 LCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84
Query: 91 YTCNSIVRGYTNKNLHHE-AFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
+ NSI+R + + H F + +M GL PD F +P L K+C + + + + +H+
Sbjct: 85 HLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHA 144
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
KFG D F+ N+LI+ YS C D A+ +F M+ +V VT +++
Sbjct: 145 HVEKFGFYGDIFVPNSLIDSYSRCGSAGL-DGAMSLFLAMKERDV----VTWNSMIGGLV 199
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
R +L ++ + E S T++D Y K + RA++LF +M P N W
Sbjct: 200 RCGELEGACKLFDEMPERDMVSW----NTMLDGYAKAGEMDRAFELFERM--PQRNIVSW 253
Query: 267 AMSATVGPQGLVGRHSTAHQISGPCPKK 294
+ +G G A + CP K
Sbjct: 254 STMVCGYSKG--GDMDMARVLFDRCPAK 279
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R++F + + +I+ GY K EA Y +M GL PD S+ +CA+
Sbjct: 269 ARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAE 328
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + K++H+ ++ + + N I+MY+ C CLD
Sbjct: 329 SGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNS 388
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES- 224
++A+++F RM E +P+ T V +L A A + ++ +++
Sbjct: 389 MIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVY 448
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G VE +MD + + A+ L M
Sbjct: 449 GIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSM 480
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F ++ + + N+++ GY AF + M + ++ M K D+ +
Sbjct: 210 LFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKG-GDMDM 268
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+ L + A + L T+I Y+ + EA +++ +ME ++P+ L++
Sbjct: 269 ARVLFDRCP----AKNVVLWTTIIAGYAEKGFVR---EATELYGKMEEAGLRPDDGFLIS 321
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+L A A + L KR+H + F ++ +D Y KC + A+D+F M+
Sbjct: 322 ILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMM 378
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 33/214 (15%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFK 133
DY ++F+ NP ++ N +RG+ + EA + Y ++ G PD + +P LFK
Sbjct: 29 DYCTNILFNT-RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87
Query: 134 SCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------- 177
+CA I + ++ + G SD F+ N +I++ SC LD
Sbjct: 88 ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147
Query: 178 ---------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EA+ + M++E +KP+ VT++ V+++ A+ DL + H ++
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIE 207
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
E+G V L LMD Y KC + A LF M
Sbjct: 208 ENGLKLTVPLANALMDMYMKCGNLESARKLFDSM 241
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 55/261 (21%)
Query: 73 CADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C D R +F + + + NS++ GY + +EA FY EM V+G+ PD +
Sbjct: 127 CGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGV 186
Query: 132 FKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------- 175
SCA D+ + ++ H + GL L N L++MY C L+
Sbjct: 187 VSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTM 246
Query: 176 -----------PD--------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
PD EA+ +F M+ N+ P+ VT+V+ L+A
Sbjct: 247 VSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSA 306
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264
++ L +H +++ +V L T L+D Y KC +++A +F ++ P N
Sbjct: 307 CSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL--PGRNSL 364
Query: 265 QWAMSATVGPQGLVGRHSTAH 285
W +A + L H AH
Sbjct: 365 TW--TAIISGLAL---HGNAH 380
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 51/271 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPT 89
L +E C+ +++LKQIHA+ + +SL + C DY + VF+Q P
Sbjct: 10 LALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQ-VFNQTQEPD 68
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCADIYV---EKQLH 145
+ N+++R Y++ A Y++M Q ++ D++ +P +FK+CA + K++H
Sbjct: 69 GFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVH 128
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW-------CLDQPDEAIKIFYR------------- 185
++ G D FL ++L+N Y C D+ D +F+
Sbjct: 129 GVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVL 188
Query: 186 ---------MEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTT 235
+E++ V+PN T++ ++ A +++L+ + +H + + V+L+
Sbjct: 189 DSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAA 248
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
L++ Y KC ++ A LF ++ P N W
Sbjct: 249 LINLYVKCGYLDGARKLFDEI--PEKNTVVW 277
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 56/302 (18%)
Query: 15 ALSSDNSPLINLDNIN-----NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL- 68
A SS +P + + N N + +Y F + + + K++H ++R
Sbjct: 78 AYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYE 137
Query: 69 -----------FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
F+ C + + + VF + + N+++ GY + + ++F + EM
Sbjct: 138 LDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEM 197
Query: 117 I-VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCW 171
+ V+ + P+ L +C + + + + +H +K L L LIN+Y C
Sbjct: 198 VEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCG 257
Query: 172 CLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLT 203
LD +E I++ M + N+KP+ T+ VL+
Sbjct: 258 YLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLS 317
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFP 259
A A+ VH+ ++ G W V + T L+D Y KC F+ A +F +M +
Sbjct: 318 ACAQMGAFNLGNWVHRFAEKKGIWD-VFIGTALIDMYAKCGFIGAARKVFDQMNERNVAT 376
Query: 260 WN 261
WN
Sbjct: 377 WN 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 32/159 (20%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F +I NS++ GY +E EM + L PDRF + +CA +
Sbjct: 263 RKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQM 322
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------- 173
+ +H A K G+ D F+ LI+MY+ C +
Sbjct: 323 GAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAIL 381
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
Q + AI++F M +P+++T + VL A A
Sbjct: 382 SGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACA 420
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 128/315 (40%), Gaps = 84/315 (26%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------CAD---------YHVRLVFSQI 85
H + +E C+T+RELKQIH Q+L L DP A ++ V
Sbjct: 10 HPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNS 69
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVE-- 141
NPT++T NS++R ++ + H +F FY ++ L PD + F L ++ A +
Sbjct: 70 QNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGT 129
Query: 142 -KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------- 177
+H A+K+G D + + LI MY+ LD +PD
Sbjct: 130 GSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAK 189
Query: 178 ------------------------------------EAIKIFYRMEIENVKPNAVTLVNV 201
EA+ +F M+ E VK N V++V+V
Sbjct: 190 MGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSV 249
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA----WDLFVKML 257
L+A + L + H ++ + + L T L+D Y KC +++A W + K +
Sbjct: 250 LSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNV 309
Query: 258 FPWNN-YGQWAMSAT 271
+ W++ G AM+
Sbjct: 310 YTWSSAIGGLAMNGA 324
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 46/270 (17%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL----FF------DPCADY-HVRLVFSQISNPT 89
H L KC T L Q + ++ + L FF D + L+F +++ P
Sbjct: 9 HSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATKDLGYTLLLFDRLATPY 68
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK--QLHSQ 147
I+ N+IVR ++ + + Y + G+IPDR FP L K+ + + E Q ++
Sbjct: 69 IFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAH 128
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+KFGL D+F+ N+L++ ++ C +D + EA
Sbjct: 129 IVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEA 188
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--FWSHVELKTTLM 237
++ F M V+ + VT+V+VL A A RD+ + VH ESG W V + + L+
Sbjct: 189 LECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWD-VYVGSALV 247
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
D Y KC + A +F +M P N W
Sbjct: 248 DMYSKCGYCDDAVKVFNEM--PTRNLVSWG 275
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 36/219 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F + + + + +++ G EA + EM G+ D S+ + A
Sbjct: 158 RRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAML 217
Query: 137 -DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSC-WCLD------------------- 174
D++ + +H ++ G + D ++ + L++MYS C +C D
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ EA+K+F M IE ++PN T+ + LTA A+ L + +H+ VD S
Sbjct: 278 IAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL 337
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +L T L+D Y KC V A +F K+ ++PW
Sbjct: 338 GLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWT 376
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF+++ + + +++ GY N + EA + EMI++G+ P++ S +CA +
Sbjct: 262 VFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGS 321
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
Q LH + L +S L L++MYS C C+ DEA+ +F ++ ++V P
Sbjct: 322 LDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCV---DEALLVFEKLPAKDVYP-WTA 377
Query: 198 LVNVLTARARA 208
++N L R A
Sbjct: 378 MINGLAMRGDA 388
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 115/263 (43%), Gaps = 45/263 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL----FFDPCA----DY-HVRLVFSQISNPTIYTCN 94
L L+KC ++ +L++I AQML S+ F P A D+ + + S P Y+ N
Sbjct: 38 LFLLKKCISVNQLREIQAQMLLHSVEKPNFLIPKAVELGDFNYASFLLSVTEEPNHYSFN 97
Query: 95 SIVRGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
++RG TN N H A Y M GL PD F + +F +C +I V + +HS K
Sbjct: 98 YMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFK 157
Query: 151 FGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKI 182
GL D + ++LI MY+ C + + +A+ +
Sbjct: 158 VGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDL 217
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +ME E +P+ TLV++L A A DL T + + K L + L+ Y K
Sbjct: 218 FRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGK 277
Query: 243 CKFVSRAWDLFVKML----FPWN 261
C + A +F +M+ WN
Sbjct: 278 CGDLDSARRVFNQMIKKDRVAWN 300
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 94/232 (40%), Gaps = 34/232 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF +I++ + NS++ GY+ +A + +M +G PD S+ +CA
Sbjct: 182 YARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACA 241
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
D+ + L AI + +FL + LI MY C LD
Sbjct: 242 HLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNA 301
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ EA K+F+ ME V P+A TL VL+A L KR+ E
Sbjct: 302 MITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEIS 361
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
++ + T L+D Y KC + A +F M P N W AM QG
Sbjct: 362 LQHNIYVATGLVDMYGKCGHIEEALRVFEAM--PVKNEATWNAMITAYAHQG 411
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 38/223 (17%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D R VF+Q+ N+++ Y+ EAF + EM G+ PD
Sbjct: 275 YGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTL 334
Query: 129 PSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
++ +C + + K++ + A + L + ++ L++MY C + +EA+++F
Sbjct: 335 STVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHI---EEALRVFEA 391
Query: 186 MEIEN----------------------------VKPNAVTLVNVLTARARARDL-RTVKR 216
M ++N V P+ VT + VL+A A + + +
Sbjct: 392 MPVKNEATWNAMITAYAHQGHAKEALLLFDQMPVPPSDVTFIGVLSACVHAGLVDQGCRY 451
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
H+ G +E T ++D + + AW+ + FP
Sbjct: 452 FHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMER--FP 492
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 49/252 (19%)
Query: 53 MRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTIYTCNSI 96
M E KQ HA++L+ LF D CA DY +F Q+ P + N++
Sbjct: 1 MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACS-IFRQMDEPGSFZFNTM 59
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEK--QLHSQAIKFGL 153
+RG+ EA + Y EM +G+ PD F +P+L K+CA + VE+ Q+H+ +K GL
Sbjct: 60 MRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGL 119
Query: 154 ASDSFLHNTLINMYSSC--------------------W--------CLDQPDEAIKIFYR 185
+D F+ N+LI+MY C W L + +++
Sbjct: 120 ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 179
Query: 186 MEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M E + LV+VL+A L + VH + + +V ++T+L++ Y KC
Sbjct: 180 MSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCG 239
Query: 245 FVSRAWDLFVKM 256
+ + LF KM
Sbjct: 240 XLYKGMCLFQKM 251
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 122/268 (45%), Gaps = 30/268 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTS----LFFDPCADYHVRL---------VFSQISNPTI 90
L L KC+ + + QIHAQ+L+ + LF P L VF+ + +P +
Sbjct: 25 LCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84
Query: 91 YTCNSIVRGYTNKNLHHE-AFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ NSI+R + + + H F + +M GL PD F +P L K+C+ + + + +H+
Sbjct: 85 HLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHA 144
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
K G D F+ N+LI+ YS C D A+ +F ME +V VT +++
Sbjct: 145 HVEKIGFYGDIFVPNSLIDSYSRCGNAGL-DGAMSLFLAMEERDV----VTWNSMIGGLV 199
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
R +L+ ++ + + S T++D Y K + A++LF +M PW N W
Sbjct: 200 RCGELQGACKLFDEMPDRDMVSW----NTMLDGYAKAGEMDTAFELFERM--PWRNIVSW 253
Query: 267 AMSATVGPQGLVGRHSTAHQISGPCPKK 294
+ +G G A + CP K
Sbjct: 254 STMVCGYSKG--GDMDMARMLFDRCPVK 279
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R++F + + +I+ GY K L EA Y +M G+ PD S+ +CA+
Sbjct: 269 ARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAE 328
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
+ + K++H+ ++ + + N I+MY+ C CLD
Sbjct: 329 SGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNS 388
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES- 224
++A+++F M E +P+ T V +L A A + ++ +++
Sbjct: 389 MIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVY 448
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G VE +MD + + A+ L M
Sbjct: 449 GIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSM 480
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F ++ + + + N+++ GY AF + M + ++ M K D+ +
Sbjct: 210 LFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKG-GDMDM 268
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+ L + + L T+I Y+ EA +++ +ME ++P+ L++
Sbjct: 269 ARMLFDRCP----VKNVVLWTTIIAGYAE---KGLAREATELYGKMEEAGMRPDDGFLLS 321
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+L A A + L KR+H + F ++ +D Y KC + A+D+F M+
Sbjct: 322 ILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMM 378
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF +I+ P I + N+I+ G HH A EM G+ P+ F S K+CA + +
Sbjct: 168 VFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMAL 227
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+QLHS IK + SDSFL LI+MYS C +D
Sbjct: 228 RELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISG 287
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ +EA +F M E + N TL VL + A + +++H +SGF
Sbjct: 288 HSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFD 347
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ +L+D Y KC V A +F
Sbjct: 348 NYVVNSLIDTYGKCGHVEDATRVF 371
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS------------LFFDPCADY-HVRLVFSQISNPTI 90
L+ C+ ++L KQ+H ++ T + + C + R +F I + ++
Sbjct: 17 LKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSV 76
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N++ Y + ++H EA +H+M++ G+ P+ F S+ C D +++H
Sbjct: 77 VSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGY 136
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------EA 179
IK G SD+F N L++MY+ L+ +PD A
Sbjct: 137 LIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRA 196
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++ M + PN TL + L A A +++H + + S L L+D
Sbjct: 197 LELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDM 256
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y KC + A +F M + WN
Sbjct: 257 YSKCNSMDDARLVFKLMPERDMIAWN 282
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 97/248 (39%), Gaps = 52/248 (20%)
Query: 3 APLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQ 62
A + H Q ++ PL++ + I N Q L S+ +QIHA
Sbjct: 283 AVISGHSQNEEDEEAASLFPLMHTEGIGFN----QTTLSTVLKSIAALQANYMCRQIHAL 338
Query: 63 MLRTSLFFD------------PCADYHVR---LVFSQISNPTIYTCNSIVRGYTNKNLHH 107
L++ FD C HV VF + + S+V Y
Sbjct: 339 SLKSGFEFDNYVVNSLIDTYGKCG--HVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGE 396
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164
EA Y EM +G+ PD F+ SL +CA + KQ+H +KFG SD F N+L+
Sbjct: 397 EALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLV 456
Query: 165 NMYSSCWCLDQPD----------------------------EAIKIFYRMEIENVKPNAV 196
NMY+ C ++ EA+++F +M V PN +
Sbjct: 457 NMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHI 516
Query: 197 TLVNVLTA 204
TLV+VL A
Sbjct: 517 TLVSVLCA 524
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 130/312 (41%), Gaps = 64/312 (20%)
Query: 46 SLEKCSTM--REL-KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPT 89
+L+ C+ M REL +Q+H+ +++ + + C RLVF +
Sbjct: 218 ALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERD 277
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHS 146
+ N+++ G++ EA + M +G+ ++ ++ KS A + Y+ +Q+H+
Sbjct: 278 MIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHA 337
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDE 178
++K G D+++ N+LI+ Y C ++ Q +E
Sbjct: 338 LSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEE 397
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A++++ M+ +KP++ ++L A A K+VH + + GF S + +L++
Sbjct: 398 ALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVN 457
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKL 298
Y KC + A F ++ P W SA +G G A Q+
Sbjct: 458 MYAKCGSIEDASCAFSRI--PVRGIVSW--SAMIGGLAQHGYGKEALQL----------- 502
Query: 299 FFFSMLKKVHVP 310
F + KV VP
Sbjct: 503 --FKQMLKVGVP 512
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 120 GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--- 173
G+ + F FPS+ K+C D+ + KQ+H + G SD F+ N+L+ +Y+ C
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 174 -------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
D EA+ +F+ M + ++PN +L +++
Sbjct: 65 RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN 261
D +++H + + G+ S L+D Y K + A +F ++ P WN
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWN 181
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 119/269 (44%), Gaps = 47/269 (17%)
Query: 53 MRELKQIHAQMLRTS----------LFFDPC---ADYHVRLVFSQISNPTIYTCNSIVRG 99
+++L+Q+HA ++ TS L C A + L+F + P + NS+++
Sbjct: 22 VKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASD 156
+ L +Y M+ + P + F S+ KSCAD+ + K +H A+ G D
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLD 141
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+++ L+ YS C ++ ++AI++FY+M
Sbjct: 142 TYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRE 201
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+P++ T V++L+A A+ + VH+ + G +V+L T L++ Y +C V +
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGK 261
Query: 249 AWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
A ++F KM N W AM + G G
Sbjct: 262 AREVFDKM--KETNVAAWTAMISAYGTHG 288
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 64/279 (22%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTS--------------LFFDPCAD--YHVRLVFSQISN 87
L+ L C+ + +LKQ+HAQ +RT+ L F D Y R VF QI N
Sbjct: 30 LLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFR-VFHQIEN 88
Query: 88 PTIYTCNSIVRG---YTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYV--- 140
P + N+++R T++ H A YH M+ QG ++ D+ FP + K+CA ++
Sbjct: 89 PNSFMWNALIRACARSTDRKQH--AIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSE 146
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLV 199
+Q+H+Q +K G SD +++N+L++ Y++C D+ D A +F RM E V N V
Sbjct: 147 GEQIHAQILKLGFDSDVYINNSLVHFYATC---DRLDFAKGVFDRMSERSLVSWNVVIDA 203
Query: 200 NVLTARARAR-------------DLRTVKRV-HKCVDES----GFWSH------------ 229
V A D T++ + + C G W+H
Sbjct: 204 FVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRV 263
Query: 230 --VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V L T+L+D YCKC + A LF +M P + W
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRM--PKRDVTSW 300
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 40/218 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS I + N+IV Y + L +A +M V+G +PD F ++ SC+ +
Sbjct: 368 VFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSAL 427
Query: 141 EK------------QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------- 174
K Q+HSQ I GL D++L N L+ MY C LD
Sbjct: 428 LKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNV 487
Query: 175 --------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+ E +++ M++E + N +T +++L A + DL K +H+
Sbjct: 488 FSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHER 547
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ G S + L++ Y C+ + A +F +M+F
Sbjct: 548 IRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVF 585
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 121/297 (40%), Gaps = 67/297 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
++ + +Q+H+QM+ L + C R F I +++ ++
Sbjct: 436 SLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILIS 495
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLAS 155
E M ++G ++ F SL +C D+ + K +H + GL S
Sbjct: 496 LLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLES 555
Query: 156 DSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRME 187
D N L+NMY++C LD+ P EA++++ RME
Sbjct: 556 DIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRME 615
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
E +P+AVTL++VL A A R L K +H+ + SG + V + T ++ Y KC+ V
Sbjct: 616 QEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVE 675
Query: 248 RAWDLFVKML----FPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFF 300
A +F ++L WN ++G ++ H C +KA L+
Sbjct: 676 DARQVFDRILDKDIVCWN--------------AMIGAYAQNH-----CEEKAFALYL 713
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 45/248 (18%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHA++L + L + C R F ++ + + N+++ Y
Sbjct: 30 KQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQH 89
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+A Y ++G PD F SL +C D+ + LH + SD +
Sbjct: 90 ECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVC 149
Query: 161 NTLINMYSSCWCLD----------QPDE------------------AIKIFYRMEIENVK 192
N LI+MYS C LD +PD A + +M E ++
Sbjct: 150 NGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLR 209
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC-KFVSRAWD 251
N +T + VL + L T K VH+ SG + ++ +L+ Y KC + A +
Sbjct: 210 SNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEARE 269
Query: 252 LFVKMLFP 259
+F+++ P
Sbjct: 270 VFLRISRP 277
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 91/227 (40%), Gaps = 32/227 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF P + T +++ YT AF + +M +GL + F ++ +C+ + V
Sbjct: 168 VFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEV 227
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W----- 171
K +H A+ GL + N+LI+MY C W
Sbjct: 228 LETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIA 287
Query: 172 CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
Q EAIK F M +E VKPNA TL +VL A A +R+H V + +
Sbjct: 288 AYGQHWEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTT 347
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
+ Y KC V+ A +F + P + W A+ + QGL
Sbjct: 348 VLNAAASLYAKCSRVADASRVFSSI--PCKDAVSWNAIVSAYAKQGL 392
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 31/198 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVF ++ + + I+ Y + EA Y M + PD S+ ++CA
Sbjct: 575 EARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACA 634
Query: 137 DI--YVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ VE K +H + + G+ +D F+ +++ Y C ++
Sbjct: 635 SLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNA 694
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
++A ++ M + PN VTL+ +L + + + +H+ G
Sbjct: 695 MIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAARG 754
Query: 226 FWSHVELKTTLMDAYCKC 243
+ SH + L++ Y KC
Sbjct: 755 YLSHTSVVNALINMYAKC 772
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/331 (19%), Positives = 126/331 (38%), Gaps = 69/331 (20%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY--HVRLVFSQIS 86
L L+ CS++ L K +H L + L + C+ + R VF +IS
Sbjct: 216 LTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRIS 275
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ--- 143
P++ + ++ + Y H EA + M ++G+ P+ S+ ++CA + +Q
Sbjct: 276 RPSVISWSAFIAAYGQ---HWEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRR 332
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQPD------------- 177
+H+ + ++ + N ++Y+ C C D
Sbjct: 333 IHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGL 392
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTA---------RARARDLRTVKRVHKCVDESGF 226
+AI + +M++E P+ +T + +L + ++ L ++VH + +G
Sbjct: 393 FRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGL 452
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHS 282
L L+ Y +C + A F + +F W + +GL S
Sbjct: 453 DGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKS 512
Query: 283 TAHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
+ G +A+K+ F S+L V G L
Sbjct: 513 M--DLEGT---EANKITFISLLGACSVTGDL 538
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M++E V + +TL+N ++A A D K++H + SG + V L +L+ Y KC
Sbjct: 1 MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60
Query: 246 VSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLK 305
V A + F +M P + W TV Q H+ C K+A +L+ +S L+
Sbjct: 61 VEEARNAFDRM--PERDLISWNAMITVYAQ---------HE----CGKQAIQLYAYSRLE 105
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF + + + N+I+ GY ++ +A EM L PD F S +F
Sbjct: 195 VRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSE 254
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMY-------------SSCWCLD------- 174
D+ K++H I+ G+ SD ++ ++L++MY S +C D
Sbjct: 255 YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSL 314
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ +EA+++F +M VKP AV +V+ A A L K++H V GF
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S++ + + L+D Y KC + A +F +M
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRM 404
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 55 ELKQIHAQMLRT------------SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
+ KQ+HAQ +RT S++ + + L+F + +P + S++R +T+
Sbjct: 23 QAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
++L +A + EM G PD +FPS+ KSC D+ + +H ++ G+ D +
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRM 186
N L+NMY+ + +F M
Sbjct: 143 GNALMNMYAKLLGMGSKISVGNVFDEM 169
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 50/281 (17%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLF-----------FDPCADY---- 76
N+ + H L+ +E C+ M +LKQI A M+ T L F AD
Sbjct: 150 NSTTNVIVTHPVLLIMESCTCMIQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIR 209
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H L+F+QI P Y N+++RG++N + F+ +M+ + + D F K+
Sbjct: 210 HAHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASE 269
Query: 137 DIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------- 173
+ +H K G + N LI+ YS CL
Sbjct: 270 QFLTALEGESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTS 329
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
D +A+K+F M + +V+PN VT+++VL+A ++ DL K +H+ V
Sbjct: 330 MIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKN 389
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V L ++D Y KC + A ++F M +F W +
Sbjct: 390 LNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTS 430
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F + + + N+++ GY+ N +A + +H M+ +GLIP + +C +
Sbjct: 445 RKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQL 504
Query: 139 -YVE--KQLHSQAIKFGLASDS-FLHNTLINMYSSCWCLDQPDEAIKIFYRM 186
Y++ + +H I+ S + N LI+MY+ C + D A ++F M
Sbjct: 505 GYLDLGRLIHMYHIERKQKGTSVIIANALIDMYAKCGVI---DAAARVFNGM 553
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 34/227 (14%)
Query: 63 MLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
+LR+SL F A + +VF+Q +P I+ N+++RG + + +A Y M G
Sbjct: 41 LLRSSLHF--AATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFA 98
Query: 123 PDRFMFPSLFKSCADI----YVEKQLHSQAIKFGLASDSFLHNTLINMYSS--------- 169
PD F FP + K+C + +V LHS IK G D F+ L+ +YS
Sbjct: 99 PDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARK 158
Query: 170 -----------------CWCLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
C ++ EA+ +F + ++P++ TLV +L A +R D
Sbjct: 159 VFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGD 218
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
L + + + + ESG +V + T+L+D Y KC + A +F M+
Sbjct: 219 LASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMV 265
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF +I + + +I+ GY EA + ++ GL PD F + +C
Sbjct: 157 RKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRV 216
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
D+ + + + G + F+ +L++MY+ C +++
Sbjct: 217 GDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALI 276
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
P EA+ +F+ M+ ENV+P+ +V V +A +R L +D F
Sbjct: 277 QGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFL 336
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S+ L T L+D Y KC V++A ++F M
Sbjct: 337 SNPVLGTALIDFYAKCGSVAQAKEVFKGM 365
>gi|224064796|ref|XP_002301563.1| predicted protein [Populus trichocarpa]
gi|222843289|gb|EEE80836.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 17 SSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL-------- 68
S SP +N ++ ++ + L+ L+ C++ LK +H +++R +L
Sbjct: 17 SRRRSPFLNSHYHTSSTCWPKFGSAEALLLLQNCTSFNHLKLVHGKIIRNALSANQLLVR 76
Query: 69 -FFDPCADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP 123
C+ Y + L+F Q+ P +T N ++R YT +A L Y+ MI +G P
Sbjct: 77 KLIHLCSSYGRLDYAALLFHQVQEPHTFTWNFLIRTYTIHGYSMKALLLYNLMIRRGFPP 136
Query: 124 DRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
D+F FP + K+C I K++H AIK G + D FL+NTL+++Y SC
Sbjct: 137 DKFTFPFVVKACLASGSIRKGKEVHGLAIKTGFSKDMFLYNTLMDLYFSC 186
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 49/272 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL-----FFDPCADY----HVRLVFSQISNPTIYTCNSIV 97
L++C ++++LKQIHAQ+L S+ F AD + + FS I +PT Y+ N ++
Sbjct: 39 LQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMI 98
Query: 98 RGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGL 153
RG + N A FY M GL P+ +P LF +C+++ + H I+ GL
Sbjct: 99 RGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGL 158
Query: 154 ASDSFLHNTLINMYSSCWCL----------DQPD------------------EAIKIFYR 185
D + ++LI MY+ C + Q D EA+ +F
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M +PN ++LV+VL A DL+ V + V E+ + + + L+ Y KC
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD 278
Query: 246 VSRAWDLFVKM----LFPWN----NYGQWAMS 269
+ A +F M WN Y Q MS
Sbjct: 279 LVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 33/220 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF +IS + + NS++ GY+ EA + EM+ G P+ S+ +C
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
D+ + + ++ + + F+ + LI+MY C L
Sbjct: 241 LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAM 300
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EAIK+F M + + P+ +TL+ +L+A A L K+V E GF
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGF 360
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V + T L+D Y KC + A+ +F M P N W
Sbjct: 361 QDDVYVGTALVDMYAKCGSLDNAFRVFYGM--PKKNEVSW 398
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 77/292 (26%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVR-------------LVFSQISNPTIYTC 93
++K ++ L QIHA +LR L+ +P ++ ++ VF+ P +++
Sbjct: 54 IDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSF 113
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL 153
++I+ + L AF +Y +M+ G+ P+ F F S+ KSC+ + K LH QAIK GL
Sbjct: 114 SAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS-LESGKVLHCQAIKLGL 172
Query: 154 ASDSFLHNTLINMYS---------------------------SCWC-LDQPDEAIKIF-- 183
SD ++ L+++Y+ +C+ + + D+A +F
Sbjct: 173 GSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEG 232
Query: 184 -----------------------------YRMEIENVKPNAVTLVNVLTARARARDLRTV 214
RM + PN VT++ VL+A + L +
Sbjct: 233 MKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESG 292
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ +H ++ G +V + T L+D Y KC + A +F ++ + WN+
Sbjct: 293 RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNS 344
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 49/272 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL-----FFDPCADY----HVRLVFSQISNPTIYTCNSIV 97
L++C ++++LKQIHAQ+L S+ F AD + + FS I +PT Y+ N ++
Sbjct: 39 LQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMI 98
Query: 98 RGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGL 153
RG + N A FY M GL P+ +P LF +C+++ + H I+ GL
Sbjct: 99 RGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGL 158
Query: 154 ASDSFLHNTLINMYSSCWCL----------DQPD------------------EAIKIFYR 185
D + ++LI MY+ C + Q D EA+ +F
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M +PN ++LV+VL A DL+ V + V E+ + + + L+ Y KC
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD 278
Query: 246 VSRAWDLFVKM----LFPWN----NYGQWAMS 269
+ A +F M WN Y Q MS
Sbjct: 279 LVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 33/220 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF +IS + + NS++ GY+ EA + EM+ G P+ S+ +C
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGE 240
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
D+ + + ++ + + F+ + LI+MY C L
Sbjct: 241 LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAM 300
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EAIK+F M + + P+ +TL+ +L+A A L K+V E GF
Sbjct: 301 ITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGF 360
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V + T L+D Y KC + A+ +F M P N W
Sbjct: 361 QDDVYVGTALVDMYAKCGSLDNAFRVFYGM--PNKNEVSW 398
>gi|356495350|ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Glycine max]
Length = 579
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 87/338 (25%)
Query: 5 LPLHHQ--TRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQ 62
LP+ + TR A++++ SP + S +HF + C R L QI A
Sbjct: 10 LPIQNTFLTRPIAITTNTSPPEGKRRL------SSLFSHFEALLQNSCQNARHLLQIQAL 63
Query: 63 MLRTSLFFDP-------------CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
++ +SLF +P C + R++F I++ + N +++ Y+N + EA
Sbjct: 64 LVTSSLFRNPYLARTILSRASHLCDVAYTRVIFRSINSLDTFCVNIVIQAYSNSHAPREA 123
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+FY +++G P+ + F L SCA I K+ H+QA K G+ S + N+LI+M
Sbjct: 124 IVFYFRSLMRGFFPNSYTFVPLVASCAKMGCIGSGKECHAQATKNGVDSVLPVQNSLIHM 183
Query: 167 YSSC--------------------W--------CLDQPDEAIKIFYRMEIENV------- 191
Y C W + + + A ++F +M N+
Sbjct: 184 YVCCGGVQLARVLFDGMLSRDLVSWNSIINGHMMVGELNAAHRLFDKMPERNLVTWNVMI 243
Query: 192 ------------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ NA T+V V TA R+ L+ K VH +
Sbjct: 244 SGYLKGRNPGYAMKLFREMGRLGLRGNARTMVCVATACGRSGRLKEAKSVHGSIVRMSLR 303
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S + L T L+ YCKC+ V A +F +M L WN
Sbjct: 304 SSLILDTALIGMYCKCRKVEVAQIVFERMRERNLVSWN 341
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D+F N +I YS+ P EAI ++R + PN+ T V ++ + A+ + + K
Sbjct: 103 DTFCVNIVIQAYSNS---HAPREAIVFYFRSLMRGFFPNSYTFVPLVASCAKMGCIGSGK 159
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSAT 271
H ++G S + ++ +L+ Y C V A LF M L WN +
Sbjct: 160 ECHAQATKNGVDSVLPVQNSLIHMYVCCGGVQLARVLFDGMLSRDLVSWN--------SI 211
Query: 272 VGPQGLVGRHSTAHQISGPCPKK 294
+ +VG + AH++ P++
Sbjct: 212 INGHMMVGELNAAHRLFDKMPER 234
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF ++ + + N++V G H EA EM G PD F S +F
Sbjct: 126 VRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAE 185
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
AD+ +LH A + G D F+ ++LI+MY++C D
Sbjct: 186 GADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSM 245
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
DEA+ +F RM +KP VT +++ A L K++H V GF
Sbjct: 246 LAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGF 305
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+V + ++L+D YCKC VS A +F ++ P
Sbjct: 306 DGNVFISSSLIDMYCKCGNVSIARRIFDRIQSP 338
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
DY V+ VF + NS++ G EA + M+ G+ P F SL +
Sbjct: 225 DYSVK-VFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPA 283
Query: 135 C---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD---- 177
C A + + KQLH+ I+ G + F+ ++LI+MY C + PD
Sbjct: 284 CGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSW 343
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVD 222
EA+ +F RME+ N+KPN +T + VLTA + A + + K + D
Sbjct: 344 TAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSD 403
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +E L D + + A++ M
Sbjct: 404 HYGIVPSLEHHAALADTLGRPGKLEEAYNFISGM 437
>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
Length = 805
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 36/220 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF +I++ +I ++ Y ++ A +H ++ +G+ D +F S+ +C+
Sbjct: 84 VFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEF 143
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ + +H A++ GL + + L++MY C L
Sbjct: 144 LAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMIT 203
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT--VKRVHKCVDESGF 226
P EA++IFYRM + P+ VT V+V A + + LR VK H C+DE+G
Sbjct: 204 ANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGL 263
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
S V + T L++AY +C + A + F M P N W
Sbjct: 264 GSDVVVATALVNAYARCGEIDCAREFFAAM--PERNAVSW 301
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 77/205 (37%), Gaps = 40/205 (19%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-----IYVEKQLHSQA 148
N+++ + EA ++ M+ G+ PD F S+FK+C+ K H+
Sbjct: 199 NAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCL 258
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------------------AIK 181
+ GL SD + L+N Y+ C +D E A++
Sbjct: 259 DETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLAVE 318
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F+ M +E V P TL L DL T + V E G + V + T L+ AY
Sbjct: 319 TFHAMLLEGVVPTRSTLFAALEG---CEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYA 375
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266
+C A +F G+W
Sbjct: 376 RCDGQEDAI-----RVFSAREEGEW 395
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 113 YHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
+H M+++G++P R + + C D++ + + + A + G+A+D + L+ Y+ C
Sbjct: 320 FHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARC-- 377
Query: 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
D ++AI++F E + +A + ++ A+ RD R+ ++ E G L
Sbjct: 378 -DGQEDAIRVFSAR--EEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRIL 434
Query: 233 KTTLMDA 239
T +DA
Sbjct: 435 YITALDA 441
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 131 LFKSCADIYVEKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDE----------- 178
L + C I K LHS+ S D +L ++L+ MY C L+ +
Sbjct: 35 LVRECNSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIV 94
Query: 179 -----------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
AI +F+R+ E + +A+ V+VL+A + L + +H+C
Sbjct: 95 LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
E+G + + L+ Y +C + A LF
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALF 186
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 53/269 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------YHVRLVFSQISNPTIY 91
L+ C++MR+L +IHA +L +P CA + +LVF +I NP
Sbjct: 30 LQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTP 89
Query: 92 TCNSIVRGYTNKN--LHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYVE---KQLH 145
NS++RG++ L +A +FY+ M+ PD + F L K+C + E +++H
Sbjct: 90 AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVH 149
Query: 146 SQAIKFGLASDSFLHNTLINMYS---------------------------SCWC-LDQPD 177
I+FG D L LI Y+ SC+C +
Sbjct: 150 GFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 209
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+K++ +M I NV + TLV++L++ A L ++H+ E ++ + L+
Sbjct: 210 EALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALI 269
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D Y KC ++ A +F M +F WN+
Sbjct: 270 DMYAKCGSLASALSIFNSMPKRDVFTWNS 298
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 48/243 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
L + +R+L QI+A +L T F + SNP + N+I+R YT
Sbjct: 34 LSNTTRIRDLNQIYAHILLTR-FLE--------------SNPASFNWNNIIRSYTRLESP 78
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTL 163
A Y M+ G++PDR+ P + K+ + I + +Q+HS IK GL S+ + +
Sbjct: 79 QNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGF 138
Query: 164 INMYSSCWCLDQP----DE------------------------AIKIFYRMEIENVKPNA 195
IN+Y D DE AI +F M+ +P+
Sbjct: 139 INLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDG 198
Query: 196 VTLVNVLTARARARDLRTVKRVHKCV--DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+T+V+V+ A DL ++HK V ++ W+ + + +L+D Y KC + A+++F
Sbjct: 199 ITMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVF 258
Query: 254 VKM 256
M
Sbjct: 259 ATM 261
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 33/157 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + P + + N+++ G + L +A + + +M G PD S+ +C D
Sbjct: 154 VFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIGD 213
Query: 138 IYVEKQLHSQAI--KFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+Y+ QLH K + + N+LI+MY C +D
Sbjct: 214 LYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMI 273
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ F+ M VKPN VT + VL+A
Sbjct: 274 VGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSA 310
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 53/269 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------YHVRLVFSQISNPTIY 91
L+ C++MR+L +IHA +L +P CA + +LVF +I NP
Sbjct: 12 LQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTP 71
Query: 92 TCNSIVRGYTNKN--LHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYVE---KQLH 145
NS++RG++ L +A +FY+ M+ PD + F L K+C + E +++H
Sbjct: 72 AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVH 131
Query: 146 SQAIKFGLASDSFLHNTLINMYS---------------------------SCWC-LDQPD 177
I+FG D L LI Y+ SC+C +
Sbjct: 132 GFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 191
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+K++ +M I NV + TLV++L++ A L ++H+ E ++ + L+
Sbjct: 192 EALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALI 251
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D Y KC ++ A +F M +F WN+
Sbjct: 252 DMYAKCGSLASALSIFNSMPKRDVFTWNS 280
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 50/281 (17%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLF--------------FDPCADYH 77
N++++ + ++ L+ L+ CS+M +LKQI A + T L D H
Sbjct: 44 NSLSNVFISNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIH 103
Query: 78 -VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
L+F Q P + N++++GY N F F+ +MI D F K+C
Sbjct: 104 YAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACG 163
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQP---------- 176
A+ V +HS K G SD F+ N LI Y CL D+
Sbjct: 164 QFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTT 223
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
DEAI +F M +VKPN VT++ +L+A ++ D K +H+ +
Sbjct: 224 MINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKD 283
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ L ++D Y KC ++ A ++F M +F W +
Sbjct: 284 ITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTS 324
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 49 KCSTMRELKQIHAQMLRTSLF--------FDPCADY-HVRLVFSQISNPTIYTCNSIVRG 99
KC + ++I M R +F + D R +F ++ I + N+++ G
Sbjct: 300 KCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAG 359
Query: 100 YTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAI-KFGLA 154
Y+ + EA +H M+ V GL+P + + + + +++H + K G+
Sbjct: 360 YSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQ 419
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
L N +++MY+ C +D A K+F+ M +N+
Sbjct: 420 VSLILKNAVMDMYAKCGSIDA---AAKLFHSMPEKNL 453
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVH- 218
N +I YS QP EA+++F+ M ++ + P TLV VL+A + L + +H
Sbjct: 354 NAMIAGYSQN---SQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHC 410
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V++ G + LK +MD Y KC + A LF M L WN+
Sbjct: 411 NHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNS 458
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 35/226 (15%)
Query: 62 QMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121
+++ + + +P H F QI NP++ NS ++ Y+ + H+A YH ++ GL
Sbjct: 38 KLINSCKYINPLLQIHTH--FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGL 95
Query: 122 IPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--- 175
PD+F F + K+C D + ++ + GL D ++ +LI+M+ CLD
Sbjct: 96 KPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARN 155
Query: 176 -------------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
P EA+++F+RM++E + + V+++N+ A +R D
Sbjct: 156 VFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGD 215
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ K +H V V +L+D YCKC V A +F +M
Sbjct: 216 VGCCKSIHGYVVRRSICGVVS--NSLIDMYCKCGDVHSAQRVFDRM 259
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 32/195 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F+++ I N+++ G+T H A ++ + + G++PD LF +CA D
Sbjct: 457 LFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDD 516
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ + LH K G SD + L++MY+ C L
Sbjct: 517 LDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIA 576
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+EAI F RM++ENV+PN VT V +L A + LR H C+ GF S
Sbjct: 577 GYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLS 636
Query: 229 HVELKTTLMDAYCKC 243
+ +L+D Y KC
Sbjct: 637 CTLIGNSLIDMYAKC 651
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 36/190 (18%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLI 164
E + M +GL PD+ + L C ++I + K +H AIK + SD + TL+
Sbjct: 383 EVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLV 442
Query: 165 NMYSS--------------------CWCL--------DQPDEAIKIFYRMEIENVKPNAV 196
+MY W P A+++F R+++ + P++
Sbjct: 443 SMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSG 502
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF--- 253
T+V + +A A DL +H +++SGF S + +K LMD Y KC + LF
Sbjct: 503 TMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLT 562
Query: 254 --VKMLFPWN 261
VK WN
Sbjct: 563 KHVKDEVSWN 572
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 71/166 (42%), Gaps = 10/166 (6%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
N ++ GY + +EA + M ++ + P+ F ++ + + + + ++ H+ I+
Sbjct: 572 NVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIR 631
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G S + + N+LI+MY+ C L + K F+ ME + ++ +L+A A
Sbjct: 632 MGFLSCTLIGNSLIDMYAKCGQLRYSE---KCFHEME----NKDTISWNAMLSAYAMHGQ 684
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + ES +++ A + WD+F M
Sbjct: 685 GELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASM 730
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 38/226 (16%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL- 131
C D + R VF ++ N+++ G + EA + M ++G D+ +L
Sbjct: 149 CLD-NARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLA 207
Query: 132 --FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC------------------- 170
D+ K +H ++ + + N+LI+MY C
Sbjct: 208 PAVSRLGDVGCCKSIHGYVVRRSICG--VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDV 265
Query: 171 -WCLDQPD--------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
W E +++ ++M NVK N V +VN L A RDL K ++
Sbjct: 266 SWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYA 325
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY 263
+ G S + + T ++ Y KC + +A +LF+ + L W+ +
Sbjct: 326 LQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAF 371
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 43/250 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRT--------------------SLFFDPCADYHVRLVFS 83
L +L+ C +++ LKQIHA +++T SL DP Y + L +
Sbjct: 41 LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDP--RYALSL-LA 97
Query: 84 QISNPTIYTCNSIVRGY-TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
Q+ P + N+I+RG T+ N E + Y +M+ +G++PD + P + K+CA+ +
Sbjct: 98 QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 157
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
+++H QAIK GLASD ++ NTL+ MY+ C D A K+F ++ + T++
Sbjct: 158 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVC---DVIRSARKVFDTSPQRDL-VSWTTMI 213
Query: 200 NVLTARARARD---LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
AR+ L ++ + +D V + L+D Y KC + A +F +M
Sbjct: 214 QGYVKMGFAREGVGLYIIRNSNVNLD-------VFVGNALVDMYLKCGDANFARKVFQEM 266
Query: 257 LFPWNNYGQW 266
P N W
Sbjct: 267 --PVKNVVSW 274
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 32/164 (19%)
Query: 73 CADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C D + R VF ++ + + NS++ G K E+ + +M G+ PD ++
Sbjct: 253 CGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAV 312
Query: 132 FKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------ 176
SCA++ V K +H+ + + +D F+ N L++MY+ C +DQ
Sbjct: 313 LNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDV 372
Query: 177 ----------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F M ++P+ VT V VLTA
Sbjct: 373 YSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 416
>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
Length = 805
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 36/220 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF +I++ +I ++ Y ++ A +H ++ +G+ D +F S+ +C+
Sbjct: 84 VFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEF 143
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ + +H A++ GL + + L++MY C L
Sbjct: 144 LAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMIT 203
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT--VKRVHKCVDESGF 226
P EA++IFYRM + P+ VT V+V A + + LR VK H C+DE+G
Sbjct: 204 ANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGL 263
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
S V + T L++AY +C + A F +M P N W
Sbjct: 264 GSDVVVATALVNAYARCGEIDCARKFFAEM--PERNAVSW 301
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 40/205 (19%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-----IYVEKQLHSQA 148
N+++ + EA ++ M+ G+ PD F S+FK+C+ K H+
Sbjct: 199 NAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACL 258
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD--------QPDE-------------------AIK 181
+ GL SD + L+N Y+ C +D P+ A++
Sbjct: 259 DETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLAVE 318
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F+ M +E V P TL L DLR + V E G + V + T L+ AY
Sbjct: 319 TFHAMLLEGVVPTRSTLFAALEG---CEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYA 375
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266
+C A +F G+W
Sbjct: 376 RCDGQEDAI-----RVFSAREEGEW 395
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F+++ + S++ +T H A +H M+++G++P R + + C D+
Sbjct: 287 RKFFAEMPERNAVSWTSMIAAFTQIG-HLLAVETFHAMLLEGVVPTRSTLFAALEGCEDL 345
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTL 198
V + + + A + G+ +D + L+ Y+ C D ++AI++F E + +A +
Sbjct: 346 RVARLVEAIAQEIGVVTDVAIVTDLVMAYARC---DGQEDAIRVFSAR--EEGEWDAALV 400
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ A+ RD R+ ++ E G L T +DA
Sbjct: 401 TAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDA 441
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 131 LFKSCADIYVEKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDE----------- 178
L + C I K LHS+ S D +L ++L+ MY C L+ +
Sbjct: 35 LVRECNSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIV 94
Query: 179 -----------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
AI +F+R+ E + +A+ V+VL+A + L + +H+C
Sbjct: 95 LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
E+G + + L+ Y +C + A LF
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALF 186
>gi|298205132|emb|CBI40653.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 44/267 (16%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRL 80
I S H + LE C++M+EL Q +++ SLF + +
Sbjct: 77 IPSHVYKHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAAR 136
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I + +++++GY + +A F+ M G+ P + F L K C AD
Sbjct: 137 VFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNAD 196
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PDE----------- 178
+ K++H Q I G AS+ F ++NMY+ C +++ P+
Sbjct: 197 LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISG 256
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A+++ RM+ E +P+++T+V++L A A LR + +H +GF S
Sbjct: 257 YAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESF 316
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + T L+D Y KC V A +F +M
Sbjct: 317 VNVSTALVDMYSKCGSVGTARLIFDRM 343
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHV-------RLV------FSQISNPTIYTCNSIV 97
+ +R+ K+IH Q++ + A V RLV F ++ + N+I+
Sbjct: 195 ADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTII 254
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLA 154
GY A M +G PD S+ + AD+ + + +H +++ G
Sbjct: 255 SGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFE 314
Query: 155 SDSFLHNTLINMYSSCWCLDQPD------EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
S + L++MYS C + A++IF +M E V+ VT++ L A A
Sbjct: 315 SFVNVSTALVDMYSKCGSVGTARLIFDRMTAMEIFQKMMDEQVEMTNVTVMGALHACADL 374
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF-VKMLFPWNNYGQWA 267
D+ + VHK +D+ S V + +L+ Y KCK R +D+ + + WN A
Sbjct: 375 GDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCK---RLFDMMDERHVTTWN-----A 426
Query: 268 MSATVGPQGL 277
M G GL
Sbjct: 427 MIDGYGTHGL 436
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 144 LHSQAIKFGLASDSF--LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201
LH A F D L++T++ Y+ LD +A+ F RM + V+P +
Sbjct: 131 LHEAARVFQPIEDKIDELYHTMLKGYARNSSLD---DAVSFFCRMRYDGVRPVVYNFTYL 187
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----L 257
L DLR K +H + +GF S+V T +++ Y KC+ V A+ +F +M L
Sbjct: 188 LKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDL 247
Query: 258 FPWN----NYGQWAMSAT 271
WN Y Q T
Sbjct: 248 VCWNTIISGYAQNGFGKT 265
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 106/256 (41%), Gaps = 51/256 (19%)
Query: 47 LEKCSTMR---ELKQIHAQMLRTSLFFD---------------PCADYHVRLVFSQISNP 88
L+ C+ R E K+IHAQM+ + D D H VF ++
Sbjct: 34 LQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH--QVFKEMPRR 91
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ + NS++ Y + +AF + EM G IP++ + S+ +C A++ K++H
Sbjct: 92 DVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIH 151
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
SQ IK G D + N+L++MY C L +
Sbjct: 152 SQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVK 211
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E + +F +M E + P+ VT +N+L A L KR+HK E G S + + T L+
Sbjct: 212 ECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALV 271
Query: 238 DAYCKCKFVSRAWDLF 253
+C V A F
Sbjct: 272 TMCVRCGDVDSAKQAF 287
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R +F + + + N+I+ GY + EA Y +M +G+ P R
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433
Query: 128 FPSLFKSCAD--IYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
F L +CA+ Y + K +H ++ G+ S+ L N L+NMY C L +
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+ A K+F M+ E ++P+ +T +VL+ L K+
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+H + ESG V L L++ Y +C + A ++F
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTI 90
L C + EL K+IH+Q+++ DP C D R VF+ IS +
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQ 147
+ N+++ Y K E + +M +G+ PD+ + +L F + + + K++H
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI------------------------- 182
++ GL SD + L+ M C +D +A K
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEA 314
Query: 183 ---FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+YRM + V N T +++L A + ++ L K +H + E G S V++ L+
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISM 374
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y +C + +A +LF M L WN
Sbjct: 375 YARCGDLPKARELFYTMPKRDLISWN 400
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 48/260 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIV 97
S + E K+IH + L D C D + F I++ + N+++
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALI 302
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
+ EAF Y+ M G+ +R + S+ +C+ + K +HS + G +
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362
Query: 155 SDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRM 186
SD + N LI+MY+ C L + EA++++ +M
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ E VKP VT +++L+A A + K +H+ + SG S+ L LM+ Y +C +
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482
Query: 247 SRAWDLF----VKMLFPWNN 262
A ++F + + WN+
Sbjct: 483 MEAQNVFEGTQARDVISWNS 502
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 44/227 (19%)
Query: 124 DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------- 170
DR + +L ++C + K++H+Q ++ G+ D FL N LINMY C
Sbjct: 26 DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85
Query: 171 ----------W-----CLDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
W C Q +A ++F M+ PN +T +++LTA +L
Sbjct: 86 KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY-GQWA 267
K++H + ++G+ ++ +L+ Y KC + RA +F + + +N G +A
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 268 MSATVGP-QGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
A V GL G+ S+ G P K+ + ++L P +L
Sbjct: 206 QKAYVKECLGLFGQMSS----EGISPD---KVTYINLLDAFTTPSML 245
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 102/255 (40%), Gaps = 46/255 (18%)
Query: 51 STMRELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIV 97
S + K IH +LR+ + + C + VF + + NS++
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
G+ + A+ + EM + L PD F S+ C + + + KQ+H + + GL
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564
Query: 155 SDSFLHNTLINMYSSC--------------------W------CLDQPDE--AIKIFYRM 186
D L N LINMY C W C DQ ++ AI++F++M
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624
Query: 187 EIENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGFWSHVELKTTLMDAYCKCK 244
+ E + P+ T ++L+A A + ++ ++ E G +E L+ + +
Sbjct: 625 QNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRAR 684
Query: 245 FVSRAWDLFVKMLFP 259
A L +M FP
Sbjct: 685 RFQEAETLINQMPFP 699
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAI 149
CNS++R YT+ N H + Y +M G+ PD FP++ KS A + + K +H I
Sbjct: 110 CNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCII 169
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQ--------PD--------------------EAIK 181
+ G S+ ++ L+NMY +C + PD + I
Sbjct: 170 QMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F M+I KP VT+V VL A A L + + +D + +V + T L+D Y
Sbjct: 230 VFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYA 289
Query: 242 KCKFVSRAWDLF----VKMLFPWN 261
KC V A +F VK ++ WN
Sbjct: 290 KCGVVDEAEKIFKAMRVKNVYTWN 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 44/216 (20%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF +I + I + N+++ GY + + + + EM + G P + +CA +
Sbjct: 197 RQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHL 256
Query: 139 -------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------- 178
+++ + ++ + F+ LI+MY+ C +D+ ++
Sbjct: 257 GALNQGRWIDDYIDHNRLRLNV----FVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTW 312
Query: 179 ---------------AIKIFYRMEIENVKPNAVTLVNVLTA---RARARDLRTVKRVHKC 220
A++ F RM +E KP+ VT + VL A + + RT K
Sbjct: 313 NVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMK- 371
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E G +E ++D + F+ A L M
Sbjct: 372 -EEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAM 406
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
DS L N++I Y+ ++ ++ I+ +M + P++ T VL + A+ K
Sbjct: 106 DSDLCNSMIRCYTDS---NKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGK 162
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+H C+ + GF S+V + T L++ Y C VS A +F ++ + WN
Sbjct: 163 AIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWN 212
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 126/295 (42%), Gaps = 73/295 (24%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRT-------------------SLFFDPCAD 75
N+Q Q L++ TM +LKQIHAQ LRT S P
Sbjct: 17 NNQSQHLIHLLNEPTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLT 76
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGY---TNKNLHHEAFLFYHEMIV---QGLIPDRFMFP 129
Y R VF NP + N+++R Y TN N H+A Y M+ + +PD FP
Sbjct: 77 YATR-VFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFP 135
Query: 130 SLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186
+ K+CA + KQ+H+ +K G SD+++ N+L++ Y++C CLD + K+FY+M
Sbjct: 136 IVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAE---KMFYKM 192
Query: 187 -----------------------------EIENV-KPNAVTLVNVLTARARARDLRTVKR 216
E++ V P+ T+ +V++A A L
Sbjct: 193 SERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVHDPDGYTMQSVISACAGLGALSLGLW 252
Query: 217 VH-----KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNN 262
VH KC + V + T L+D YCK + A +F M F WN+
Sbjct: 253 VHAYILKKC--DKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNS 305
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 128/289 (44%), Gaps = 56/289 (19%)
Query: 40 AHFCLVSLEKCSTMRELKQIHAQMLRTS-----------LFF----DPCADYHVRL-VFS 83
A L+S +KC+T+ +LKQ+HAQM+ ++ LFF P D + +F
Sbjct: 19 ATLALIS-DKCTTLDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFH 77
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YV 140
P + N+++R T+ A Y M ++P + FP L K+CA +
Sbjct: 78 STPRPNSFMWNTLIRAQTHAP---HALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTA 134
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYS-SCWCL-------DQPD--------------- 177
+Q+H IKFGL DS + + L+ YS S C+ + P+
Sbjct: 135 SQQVHVHVIKFGLDFDSHVVDALVRCYSVSGHCVSARQVFDETPEKISSLWTTMVCGYAQ 194
Query: 178 -----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC--VDESGFWSHV 230
EA+++F M E +P TL +VL+A AR+ L +R+H+ V G V
Sbjct: 195 NFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELGERIHEFMKVKGVGLGEGV 254
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
L T L+ Y K ++ A LF +M P N W AM +G G V
Sbjct: 255 ILGTALVYMYAKNGEIAMARRLFDEM--PERNVVTWNAMICGLGAYGYV 301
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 82/317 (25%)
Query: 44 LVS-LEKCSTMRELKQIHA---------------QMLRTSLFFDPCADYHVRLVFSQISN 87
LVS L C+ + ++KQ+HA ++LRT D D + RLVF Q+
Sbjct: 42 LVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA----------- 136
P + +++RGY + E+ L Y+ M QG+ P F F +L K+C+
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQV 161
Query: 137 ------------DIYVEKQLHSQAIKFGLAS------DSFLHNTLI-------------N 165
D+YV L +K G D L +I N
Sbjct: 162 HTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221
Query: 166 MYSSCWCLD---------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
M ++ D +P EA+++F RM+ VK + VTLV V++A
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281
Query: 205 RARARDLRTVKRVHKCVDESGFW--SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
A+ + V ++SGF S+V + + L+D Y KC V A+ +F +M N
Sbjct: 282 CAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERME-ERNV 340
Query: 263 YGQWAMSATVGPQGLVG 279
Y +M GL G
Sbjct: 341 YSYSSMIVGFAMHGLAG 357
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 34/234 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + I + N+++ Y L EA F +M G P+ F ++ +CA +
Sbjct: 419 IFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGF 478
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
K++H+ ++ GL SD F+ N+LI+MY+ C CL
Sbjct: 479 LGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYNILIIGY 538
Query: 174 ---DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
D +++ +F M + KP+ V+ V V++A A L+ K VH + +SH+
Sbjct: 539 SETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHL 598
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ +L+D Y KC + A LF ++LF + W + + G++G TA
Sbjct: 599 FVSNSLLDFYTKCGRIDIACRLFNQILF--KDVASW--NTMILGYGMIGELETA 648
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 50/263 (19%)
Query: 41 HFCLVSL-EKCSTMRELKQIHAQMLRTSLF---FDPCADYHVRLV-------FSQISNPT 89
H L++L K ++ + KQ+HA + CA + F + N T
Sbjct: 57 HINLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQT 116
Query: 90 IYTC------NSIVRGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
C N+++R ++ N + F Y+ M+ +G+ D FP + K C+D I
Sbjct: 117 FQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDIC 176
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPD-------------- 177
++H K G +D ++ NTL+ +Y +C L + P+
Sbjct: 177 KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLS 236
Query: 178 ------EAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
EA ++ M + +V KPN V+++++L A D +R+H + G S V
Sbjct: 237 VNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQV 296
Query: 231 ELKTTLMDAYCKCKFVSRAWDLF 253
L+DAY KC V W +F
Sbjct: 297 TTCNALVDAYGKCGSVKALWQVF 319
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VF++ + NSI+ G K +A + MI G P+ S+ ++
Sbjct: 318 VFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELEC 377
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------------- 170
K++H +++ G +D F+ N+LI+MY+
Sbjct: 378 FKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIAN 437
Query: 171 WCLDQ-PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ L++ P EAI+ +M+ PNAVT NVL A AR L K +H G S
Sbjct: 438 YALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSD 497
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ + +L+D Y KC + A ++F
Sbjct: 498 LFVSNSLIDMYAKCGCLHSARNVF 521
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+FL NTLI +S W + + + + RM V+ + T VL + + D+
Sbjct: 123 AFLWNTLIRAHSIAW--NGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGME 180
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
VH V + GF + V + TL+ Y C F++ A LF +M P + W + +G
Sbjct: 181 VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEM--PERDVVSW--NTIIGLLS 236
Query: 277 LVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
+ G ++ +A +F+ +L+ V P ++
Sbjct: 237 VNGDYT-----------EARNYYFWMILRSVIKPNLV 262
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 32/214 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R+VF QI P + N+I+ G+ EA F+ +M QGLIPD SL +C
Sbjct: 320 ARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTS 379
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W-- 171
+++Y Q+H K GL D + NTL+ MY+ C W
Sbjct: 380 PSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNA 439
Query: 172 ----CL--DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+ DQ +E + M I +P+ +TL NVL A A + +VH ++G
Sbjct: 440 ILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTG 499
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ + L+D Y KC + A +F ++ P
Sbjct: 500 LNCDISVTNGLIDLYAKCGSLKTARKIFDSVINP 533
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISNPTI 90
++ CS++ ++ +Q+HA +L++ S++ VFS+++ +
Sbjct: 171 IKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDL 230
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIY---VEKQLHS 146
+ S++ G++ EA ++ EM+ QG+ +P+ F+F S+F +C+ + +QLH
Sbjct: 231 ISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHG 290
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------E 178
+IKFGL D F +L +MY+ C L +PD E
Sbjct: 291 MSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKE 350
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
AI F +M + + P+ +T+ ++L A +L +VH +++ G V + TL+
Sbjct: 351 AIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLT 410
Query: 239 AYCKCKFVSRAWDLFVKM-----LFPWN 261
Y KC + A F +M L WN
Sbjct: 411 MYAKCSELRDAIFFFEEMRCNADLVSWN 438
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 113/286 (39%), Gaps = 64/286 (22%)
Query: 37 QYQAHFCLVS------LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV--------- 78
Q + FCL + CS +R L ++IH ML++ D H+
Sbjct: 54 QKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGS 113
Query: 79 ----RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ VF + + + S++ GY+ A FY +M+ G++PD+F F S+ K+
Sbjct: 114 LKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKA 173
Query: 135 C---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM----- 186
C DI + +QLH+ +K + N LI+MY+ + +A+ +F RM
Sbjct: 174 CSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKS---NVIIDALDVFSRMATRDL 230
Query: 187 ---------------EIENV------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
E+E + PN +V +A + +++H
Sbjct: 231 ISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHG 290
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ G V +L D Y KC +S A +F ++ L WN
Sbjct: 291 MSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWN 336
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
N + + N+I+ + + E F M + PD ++ + A+ I + Q
Sbjct: 431 NADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQ 490
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---------------- 177
+H A+K GL D + N LI++Y+ C L PD
Sbjct: 491 VHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGY 550
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+K+F M +VKPN VT V VLTA
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTA 579
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 58 QIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKN 104
Q+H L+T L + C R +F + NP + + +S++ GY
Sbjct: 490 QVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFG 549
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEK--QLHSQAIK-FGLASDSFLH 160
EA + M + P+ F + +C+ + VE+ QL+ K FG+
Sbjct: 550 YGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHC 609
Query: 161 NTLINMYSSCWCLDQPDEAI-KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+ ++++ + CL++ + I ++ + +I K +V A AR +L+ K+ H+
Sbjct: 610 SCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLLAACKSVHQALARRTNLKVWKKQHE 669
Query: 220 CV 221
+
Sbjct: 670 VI 671
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
+FS +P ++ N+I+RGY+ + A Y +M + G+ P+ + F + +C +
Sbjct: 23 IFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLR 82
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---------- 177
++LHSQ +K GL ++ L N LI +Y++C C+D +PD
Sbjct: 83 LCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSG 142
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E +K+ M+ ENV +A TL +V+ L K VH +D+ G
Sbjct: 143 YSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKID 202
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L T L+ Y KC + A +F M
Sbjct: 203 VVLGTALVGMYSKCGSLDNALKVFQGM 229
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N++ +GYT ++AF Y M + G+ PD + ++CA D ++ Q IK
Sbjct: 471 NALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIK 530
Query: 151 FGLASDSFLHNTLINMYSSCWCL-----------------------------DQPDEAIK 181
G S+ + + LINM++ C L Q +EA+
Sbjct: 531 HGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVA 590
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F +M++E +PNAVT VN++ A A LR VH + + GF S + +L+D Y
Sbjct: 591 TFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYA 650
Query: 242 KCKFVSRAWDLFV----KMLFPWNN 262
KC + + F+ K + WN
Sbjct: 651 KCGMIESSEKCFIEISNKYIVSWNT 675
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL-----FFDPCADYH----VRLVFSQISNPTIYTCN 94
L+ L +C R L Q+H ++ + L + + + R++F + +P + N
Sbjct: 9 LLMLRECKNFRCLLQVHGSLIVSGLKPHNQLINAYSLFQRQDLSRVIFDSVRDPGVVLWN 68
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++RGYT LH EA F+ M + G+ PD++ F K+CA D ++H +
Sbjct: 69 SMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAE 128
Query: 151 FGLASDSFLHNTLINMY-------SSCWCLDQ---------------------PDEAIKI 182
GL SD ++ L+ MY S+ D+ A+ +
Sbjct: 129 MGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLL 188
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F+ M V + V+L N++ A ++ + +H V + GF + L+D YC
Sbjct: 189 FHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFI--FAFSSGLIDMYCN 246
Query: 243 CKFVSRAWDLF 253
C + A +F
Sbjct: 247 CADLYAAESVF 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
D+ +H A++ GL D + +L++MYS C L+
Sbjct: 314 GDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMI 373
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q DEAI +F M ++KPNAVTL +VL A R K +H ++
Sbjct: 374 ASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIE 433
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S +E T ++ Y KC S A F ++
Sbjct: 434 SELETATAVISMYAKCGRFSPALKAFERL 462
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 39/235 (16%)
Query: 66 TSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
TSL + C + + +F I + + + ++++ Y H EA + +M+ +
Sbjct: 339 TSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIK 398
Query: 123 PDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCW-------- 171
P+ S+ + CA + K +H AIK + S+ +I+MY+ C
Sbjct: 399 PNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKA 458
Query: 172 --------------------CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
+ ++A ++ M++ V P++ T+V +L A D
Sbjct: 459 FERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDY 518
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF-----PWN 261
V+ + + GF S + L++ + KC ++ A LF K F WN
Sbjct: 519 ARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWN 573
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 178 EAIKIF-YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+ F Y E + + P+ + L A A + D + R+H + E G S V + T L
Sbjct: 82 EALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTAL 141
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNN 262
++ YCK + + A +F KM + WN
Sbjct: 142 VEMYCKARDLVSARQVFDKMHVKDVVTWNT 171
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 37/237 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ + T N++V G A L +H+M + D +L + + +
Sbjct: 155 RQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------------WCLDQP------ 176
V + LH IK G + LI+MY +C W D+
Sbjct: 215 EKSDVCRCLHGLVIKKGFIFA--FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMM 272
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+E +++F M +V+ N V + L A A DL +H + G
Sbjct: 273 AAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLI 332
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
V + T+LM Y KC + A LF+ + + W SA + G+H A
Sbjct: 333 GDVSVATSLMSMYSKCGELEIAEQLFINI--EDRDVVSW--SAMIASYEQAGQHDEA 385
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 59/275 (21%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFF------------DPCADYHVRLVFSQISNP 88
H L L+KC + LKQ+HAQML T L F A + +F+ I NP
Sbjct: 6 HPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFTIFNHIPNP 65
Query: 89 TIYTCNSIVRGYTNKNLH-HEAFLFYHEMIV-QGLIPDRFMFPSLFKSCAD---IYVEKQ 143
T++ N+++ T+ + H AF Y+ ++ + L P+ F FPSLFK+CA +
Sbjct: 66 TLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPP 125
Query: 144 LHSQAIKF-GLASDSFLHNTLINMYS-------SCWCLDQ---PD--------------- 177
LH+ +KF D F+ N+L+N Y+ S + DQ PD
Sbjct: 126 LHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSA 185
Query: 178 ----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
EA+ +F M++ +KPN VTLV +++A + L H V
Sbjct: 186 SHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYV 245
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + + T L+D Y KC ++ A LF ++
Sbjct: 246 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDEL 280
>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
Length = 849
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 136/312 (43%), Gaps = 52/312 (16%)
Query: 55 ELKQIHAQ-----------MLRTSLF--FDPCAD-YHVRLVFSQISNPTIYTCNSIVRGY 100
E ++IHA+ +L T+L + C D +H +VF Q N + CN+++ Y
Sbjct: 200 EARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAY 259
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYVEKQL-HSQAIKFGLASDS 157
+A ++ + GL P++ + LF++CA +Y + ++ H I L D
Sbjct: 260 IQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDV 319
Query: 158 FLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIE 189
++ L++MYS C L+ DEA++++ ME
Sbjct: 320 VVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAA 379
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
V+P+ +T VNVL + + A L + +HK V ++G+ S + + + L+ Y C + A
Sbjct: 380 GVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDA 439
Query: 250 WDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA----HQISGPCPKKAHKLFFFSMLK 305
D+F K + ++ W T + GR + A + G KA+ + F S +
Sbjct: 440 VDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGV---KANVVTFVSTID 496
Query: 306 KVHVPGVLIQVH 317
G L++ H
Sbjct: 497 ACSSIGALVEGH 508
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 39/253 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++ + T N ++ GY + EA Y M G+ PD F ++ +SC+
Sbjct: 339 RRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLA 398
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------- 173
+ + +H + G S + + LI MYS+C L
Sbjct: 399 EHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTA 458
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ A+ +F +M++E VK N VT V+ + A + L + + V +G
Sbjct: 459 MLTALTRNGEGRSALALFRKMDLEGVKANVVTFVSTIDACSSIGALVEGHAIFERVIVTG 518
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRH 281
+ V L T+L++ Y KC + A ++F K + WN A S+ G + L
Sbjct: 519 YLIDVVLGTSLINLYGKCGRLDYALEVFHHLSFKNIVTWNTI--LAASSQNGEETLSAEL 576
Query: 282 STAHQISGPCPKK 294
+ G P +
Sbjct: 577 LQEMDLDGAQPNE 589
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 157/377 (41%), Gaps = 77/377 (20%)
Query: 2 AAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEK-CSTMRELKQIH 60
A LP +P+ +S+N L + + S+ ++ L+SL K CS L QIH
Sbjct: 31 TASLPFLDSEESPSTASENHR--RLQHQTHPLPKSRDESENQLISLIKSCSKKTHLLQIH 88
Query: 61 AQMLRTSLF--------------FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNL 105
A ++RTSL P D + VFSQI P+ N ++R Y+ +
Sbjct: 89 AHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSMSHS 148
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNT 162
+ F Y EM +G+ P+ + KSC + + Q+H++ ++ G SD+ L T
Sbjct: 149 PEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTT 208
Query: 163 LINMYSSCWCLDQPDEAIKIF---------------------------YRM------EIE 189
L+++YS C D+ +EA K+F RM +
Sbjct: 209 LMDLYSCC---DKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTAD 265
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
+P+ VT + +L A A L +RVH ++E G+ + L +L+ Y +C + +A
Sbjct: 266 GFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKA 325
Query: 250 WDLFVKM-------------LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAH 296
+ +F +M F + YG+ A+ A Q L G ++G +H
Sbjct: 326 YSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQL-GVSPDDQTLTGVLSACSH 384
Query: 297 ------KLFFFSMLKKV 307
L FF + KV
Sbjct: 385 CGLVDDGLMFFDRMSKV 401
>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g56570
gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 611
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+F+ R +F ++ + + +++ GY + N + A+ +HEM+ QG P+ F
Sbjct: 55 YFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTL 114
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------- 170
S+ KSC ++ V +H +K G+ ++ N ++NMY++C
Sbjct: 115 SSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIK 174
Query: 171 ------WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
W L +K++ +M +EN + + + A A + T K+
Sbjct: 175 VKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQ 234
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+H V + GF S++ + +++D YC+C ++S A F +M L WN
Sbjct: 235 IHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWN 283
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
L+F I T +++ G+T+ Y +M+++ + ++ A I
Sbjct: 168 LIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASID 227
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
KQ+H+ IK G S+ + N+++++Y C L +
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +F R E + PN T +++ A A L +++H + GF +
Sbjct: 288 ELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKN 347
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
VEL L+D Y KC + + +F +++ N +M G G
Sbjct: 348 VELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHG 394
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 100/250 (40%), Gaps = 51/250 (20%)
Query: 57 KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
KQIHA +++ + D + R F ++ + + T N+++
Sbjct: 233 KQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERS 292
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ EA L + QG +P+ + F SL +CA+I +QLH + + G + L
Sbjct: 293 D-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELA 351
Query: 161 NTLINMYSSCWCLDQPD-------------------------------EAIKIFYRMEIE 189
N LI+MY+ C + PD EA+++F +M
Sbjct: 352 NALIDMYAKCGNI--PDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSS 409
Query: 190 NVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++P+ + + VL+A R + +K + E G ++ ++D + +
Sbjct: 410 GIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGE 469
Query: 249 AWDLFVKMLF 258
A++L +M F
Sbjct: 470 AYELVERMPF 479
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 44/255 (17%)
Query: 47 LEKCSTMRELKQIHAQML-----RTSLFFDPCADYHVRL--------VFSQISNPTIYTC 93
+++C ++++LK +HAQ++ L V+L +F QI P +
Sbjct: 43 IDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMF 102
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N +++GY+N + ++ L Y M+ G++P++F P + K+CA ++ +H+Q+ K
Sbjct: 103 NHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFK 162
Query: 151 FGLASDSFLHNTLINMYSSCWC----------------------------LDQPDEAIKI 182
G+ S + + N ++N+Y +C + + +EA+ +
Sbjct: 163 LGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLM 222
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M+ ++P+ TLV +L+ + + + VH + +G + LMD Y K
Sbjct: 223 FREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAK 282
Query: 243 CKFVSRAWDLFVKML 257
C + A +F +ML
Sbjct: 283 CGNLKCAKSVFDQML 297
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 101/284 (35%), Gaps = 72/284 (25%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF IS T+ + NS++ GY+ EA L + EM GL PD F L
Sbjct: 189 RRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKH 248
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTL-------------------------------I 164
+ + + +H + G+ DS + N L I
Sbjct: 249 GNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMI 308
Query: 165 NMY-------------------------SSCWCLDQPD---EAIKIFYRMEIENVKPNAV 196
N Y S WC Q EA+ +FYRM V N
Sbjct: 309 NAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDT 368
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
TLV +L++ + DL K+ H + ++ L ++D Y KC + A D+F M
Sbjct: 369 TLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGM 428
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA------HQISGPCPKK 294
P N W + +G L G A Q SG CP +
Sbjct: 429 --PEKNAVSW--NVIIGALALHGYGKEAIEMFEKMQASGVCPDE 468
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 124/315 (39%), Gaps = 63/315 (20%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPC---ADYHVRL 80
I +D+I N + Y KC ++ K + QML + C A + L
Sbjct: 266 IEIDSIVTNALMDMY---------AKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGL 316
Query: 81 V------FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ F+Q+ + + NSI+ + + L+ EA ++ M G++ + ++ S
Sbjct: 317 IDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSS 376
Query: 135 C---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
C D+ + KQ HS + + L N +I+MY+ C L
Sbjct: 377 CSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSW 436
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
EAI++F +M+ V P+ +T +L+A + + + T + + ++
Sbjct: 437 NVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNL 496
Query: 224 S-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN-------NYGQWAMSA 270
+ G VE ++D + + A L KM + W+ YG A+
Sbjct: 497 TFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGK 556
Query: 271 TVGPQGL-VGRHSTA 284
+ Q L +GR+++
Sbjct: 557 QIMKQLLELGRYNSG 571
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 45/236 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA- 136
R+VF ++ ++ N+IV YT L +A + E+I V PD F P + K+CA
Sbjct: 54 RMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAG 113
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK-- 192
D+ + + +H A K L SD F+ N LI MY C ++ EA+K+F M N+
Sbjct: 114 LLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE---EAVKVFEHMPERNLVSW 170
Query: 193 -------------------------------PNAVTLVNVLTARARARDLRTVKRVHKCV 221
P+ TLV VL A D+ VH
Sbjct: 171 NSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLA 230
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNY-GQWAMSATV 272
+ G + + +L+D Y KC+F+S A LF K + WN+ G +A V
Sbjct: 231 VKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDV 286
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + T+ + N+++ GY + +A Y +M GL PD F SL +C+
Sbjct: 364 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 423
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
++ +++H A++ GLA D F+ +L+++Y C W +
Sbjct: 424 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 483
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
PDEAI +F +M + ++P + ++ V A ++ LR K +H ++
Sbjct: 484 YSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 543
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+ + ++++D Y K + + +F ++ + W + + G+ GR A ++
Sbjct: 544 IFVSSSIIDMYAKGGCIGLSQRIFDRL--REKDVASW--NVIIAGYGIHGRGKEALEL 597
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 47/206 (22%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDP------------CAD-YHVRLVFSQISNPTIYTC 93
CS M+ L ++IH LR L DP C + +++F + + ++ +
Sbjct: 418 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 477
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIK 150
N ++ GY+ L EA + +M+ G+ P + +C+ + + K+LH A+K
Sbjct: 478 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK 537
Query: 151 FGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKI 182
L D F+ +++I+MY+ C+ + EA+++
Sbjct: 538 AHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALEL 597
Query: 183 FYRMEIENVKPNAVTLVNVLTARARA 208
F +M +KP+ T +L A + A
Sbjct: 598 FEKMLRLGLKPDDFTFTGILMACSHA 623
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 46/259 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADYH------VRLVFSQISNP 88
L+ +E CSTMR+LKQI A+M T + CA H +F+++ P
Sbjct: 161 LLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQP 220
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ N+++RGY N AF F+ M + D F K+C ++ + ++
Sbjct: 221 NTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVY 280
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPD 177
K G + + N LI+ Y+ L D +
Sbjct: 281 CVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSE 340
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M + +V+PN VTL+ V++A + +L KRVH+ V+E + L L+
Sbjct: 341 EAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALL 400
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC + A +LF +M
Sbjct: 401 DMYVKCDCLVDARELFDRM 419
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF + S+ + T +++ GY + EA + M++ + P+ ++ +C+
Sbjct: 310 NARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACS 369
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
D + + K++H + + + LHN L++MY C CL +A ++F RM ++V
Sbjct: 370 DMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCL---VDARELFDRMATKDV-- 424
Query: 194 NAVTLVNVLTARARARDLRTVKR 216
+ +++ A+ DL + +R
Sbjct: 425 --YSWTSMVNGYAKCGDLESARR 445
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 27 DNINNNNINSQYQAHFCLVSLE-KCSTMRELKQIHAQMLRTSLF--------FDPCADYH 77
+ + N+ H L+ + KC + + +++ +M ++ + C D
Sbjct: 382 EKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLE 441
Query: 78 -VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R F Q ++++ GY+ N E+ +HEM+ +G++P S+ +C
Sbjct: 442 SARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACG 501
Query: 137 DIY---VEKQLHSQAIKFGLASDSF-LHNTLINMYSSCWCLDQPDE-------------- 178
+ + +H + + S L N +++MY+ C +D E
Sbjct: 502 QLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWN 561
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTA 204
AI +F +M +PN +T V++LTA
Sbjct: 562 TMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTA 601
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 45/276 (16%)
Query: 44 LVSLEKCSTMRELKQIHA------QMLRTSL--------FFDPCADYH-VRLVFSQISNP 88
L S ++RE ++IHA Q++R +L + C R VF I N
Sbjct: 151 LGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNR 210
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
+ S++ Y N EA Y +M G+ PD F S +C + K +H++
Sbjct: 211 DAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARI 270
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+ + SD F+ + LINMY+ C + EA+
Sbjct: 271 VSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREAL 329
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ RM+ E V + VT V L A A L+ K +H V E GF S V + T L+ Y
Sbjct: 330 DLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLV-VHTALLTMY 388
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
KC + A +F ++ N Y AM + G
Sbjct: 389 AKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAG 424
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 55/285 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSL-----------FFDPCADYH-VRLVFSQISNPTIYTC 93
+L C+ + + K IHA+++ +++ + C D R F +I N +
Sbjct: 253 ALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCW 312
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
S++ Y + EA Y M +G+ D + + +CA + K+ +HS+ +
Sbjct: 313 TSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFE 372
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP-----------------------------DEAIK 181
G S +H L+ MY+ C LD EA++
Sbjct: 373 CGFQS-LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALE 431
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
++ +M E +PN T NVL A + + DL ++H V+ S S+V ++ L+ Y
Sbjct: 432 LYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYA 491
Query: 242 KCKFVSRAWDLFV----KMLFPWNNYGQWAMSATVGPQGLVGRHS 282
KC + A F K L WN AM GL GR +
Sbjct: 492 KCGSLELAKSAFEASGRKDLVSWN-----AMIGAYAQHGL-GREA 530
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 56/261 (21%)
Query: 47 LEKCS---TMRELKQIHAQMLRTS------------LFFDPCADYHV-RLVFSQISNPTI 90
L++C ++ E K +H +LRT + C + H+ R F ++
Sbjct: 49 LQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKA 108
Query: 91 YTC-NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
C N ++ Y L + A YH M +G PD+ + + SC + +++H+
Sbjct: 109 VACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHA 168
Query: 147 QAIKF-GLASDSF-LHNTLINMYSSCWCLDQP---------------------------- 176
I+ + D+ L N L+NMY C +++
Sbjct: 169 SIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFC 228
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV-KRVHKCVDESGFWSHVELKTT 235
DEA+ ++ +M+ + ++P+++T + L A + D + + R+ ES F + +
Sbjct: 229 DEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDF-----VGSA 283
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L++ Y +C VS A F K+
Sbjct: 284 LINMYARCGDVSSARQAFEKI 304
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
F + + N+++ Y L EA Y M QG++PD S +CA
Sbjct: 502 AFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGS 561
Query: 138 IYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ + +++HS+ +K S + L+NMY C L+
Sbjct: 562 LQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTS 621
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+ + ++ M + ++PN +T ++L
Sbjct: 622 AYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVG 657
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
+ R VF + +P + N+++ GY + EAF + +M +G PDRF + SL C
Sbjct: 306 NARQVFDNLRSPNRVSWNAMIAGY-GEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICA 364
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
AD+ K+LHSQ ++ +D + LI+MY+ C L++
Sbjct: 365 DRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNA 424
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA ++F +M ++V P+ VT + +L + D + +H +D+ G
Sbjct: 425 FIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWG 484
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S+ + L+ Y +C ++ A ++F ++ L WN
Sbjct: 485 MLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWN 524
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 44/241 (18%)
Query: 57 KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
K++H+Q++RT+ D C R VF+Q+ + N+ +
Sbjct: 373 KELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRH 432
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
EAF + +M +IPD F +L SC D + +H + ++G+ S++ +
Sbjct: 433 GSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVA 492
Query: 161 NTLINMYSSCWCLDQPDE----------------------------AIKIFYRMEIENVK 192
N LI+MY C L E A +F + + E K
Sbjct: 493 NALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGK 552
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
+ T +NVL A A DL +++H V+++G + + TTL+ Y KC + A+ +
Sbjct: 553 GDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSV 612
Query: 253 F 253
F
Sbjct: 613 F 613
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 32/219 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF+++ + + +++ GY EAF+ + ++I G P++ F S+ +C
Sbjct: 206 ARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTN 265
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
D+ +LH+ + GL + + N LI+MY+ C L
Sbjct: 266 PNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAM 325
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+EA ++F M+ + +P+ T ++L A DL K +H + + +
Sbjct: 326 IAGYGEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWE 385
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ V + T L+ Y KC + A +F +M P N W
Sbjct: 386 ADVTVATALISMYAKCGSLEEARKVFNQM--PEKNAVSW 422
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 39/228 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-IY 139
VF + + + + N+++ GY EA +++M +GL P++ F S+ +C I
Sbjct: 108 VFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIV 167
Query: 140 VE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+E +Q+HS K G SD + LINMY C L+
Sbjct: 168 LEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISG 227
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA +F ++ +PN V+ ++L A DL ++H + ++G
Sbjct: 228 YVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQE 287
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN----NYGQWAMS 269
V + L+ Y +C ++ A +F + P WN YG+ M
Sbjct: 288 VLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGEGFME 335
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF +I + + N+++ Y + AF + + +G D++ F ++ ++ A
Sbjct: 508 AREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIAN 567
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
D+ +++H K GL D + TLI MYS C L
Sbjct: 568 LEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAM 627
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D +A+K+F +M +E V P++ T +VL A AR + K+ H + E+
Sbjct: 628 LAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEAAM 687
Query: 227 WSHVELKTTLMDAYCKCKFVSRA 249
+ ++ A + + A
Sbjct: 688 ETDTRHYACMVAALGRASLLKEA 710
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 28/143 (19%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------ 177
K++H D +L+N LI+MYS C ++ +
Sbjct: 71 KKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALH 130
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EA+ +FY+M+ E +KPN + +++L+A L +++H + ++G+ S V +
Sbjct: 131 GRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVS 190
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
T L++ YCKC + A +F +M
Sbjct: 191 TALINMYCKCGSLELARKVFNEM 213
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 27/237 (11%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTIYTC 93
L +CS++ ++KQIHAQ+L+ +L F C + + VF+QI +P +
Sbjct: 24 LHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLY 83
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+++R + + AF + EM G+ D F +P L K+C+ + V + +H+Q K
Sbjct: 84 NTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEK 143
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G D F+ N+LI+ Y C LD A K+F M + + V+ +++ + +
Sbjct: 144 MGFCLDIFVPNSLIDSYFKC-GLDGVAAARKVFEVM----AERDTVSWNSMIGGLVKVGE 198
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
L +R+ + E S T++D Y K ++ A++LF KM P N W+
Sbjct: 199 LGEARRLFDEMPERDTVSW----NTILDGYVKAGEMNAAFELFEKM--PARNVVSWS 249
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 52/229 (22%)
Query: 46 SLEKCSTMRELKQIHAQM-LRTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSI 96
L K + E +++ +M R ++ ++ D +V+ +F ++ + + +++
Sbjct: 192 GLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTM 251
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASD 156
V GY+ A + + +M V+ L+P M Y EK GLA D
Sbjct: 252 VLGYSKAGDMDMARILFDKMPVKNLVPWTIMISG--------YAEK---------GLAKD 294
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
AI ++ +ME +K + T++++L+A A + L KR
Sbjct: 295 ----------------------AINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKR 332
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
VH ++ + F + L+D Y KC + A +F M + WN
Sbjct: 333 VHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWN 381
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 34/234 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + I + N+++ Y L EA F +M G P+ F ++ +CA +
Sbjct: 270 IFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGF 329
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
K++H+ ++ GL SD F+ N+LI+MY+ C CL
Sbjct: 330 LGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYNILIIGY 389
Query: 174 ---DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
D +++ +F M + KP+ V+ V V++A A L+ K VH + +SH+
Sbjct: 390 SETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHL 449
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ +L+D Y KC + A LF ++LF + W + + G++G TA
Sbjct: 450 FVSNSLLDFYTKCGRIDIACRLFNQILFK--DVASW--NTMILGYGMIGELETA 499
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VF++ + NSI+ G K +A + MI G P+ S+ ++
Sbjct: 169 VFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELEC 228
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------------- 170
K++H +++ G +D F+ N+LI+MY+
Sbjct: 229 FKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIAN 288
Query: 171 WCLDQ-PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ L++ P EAI+ +M+ PNAVT NVL A AR L K +H G S
Sbjct: 289 YALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSD 348
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ + +L+D Y KC + A ++F
Sbjct: 349 LFVSNSLIDMYAKCGCLHSARNVF 372
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 32/170 (18%)
Query: 116 MIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M+ +G+ D FP + K C+D I ++H K G +D ++ NTL+ +Y +C
Sbjct: 1 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60
Query: 173 LDQP----------------------------DEAIKIFYRMEIENV-KPNAVTLVNVLT 203
L+ EA ++ M + +V KPN V+++++L
Sbjct: 61 LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
A D +R+H + G S V L+DAY KC V W +F
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVF 170
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 115/270 (42%), Gaps = 54/270 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPC-----ADYHVRL--------VFSQISNPTI 90
L CS + L KQIHA +LR L D D +V+ +F+ + N I
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GY LH EA + M GL PD + S+ SCA ++ Q+H+
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK L +DS++ N+LI+MY+ C CL
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWEL 435
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+ IF M ++P+ +T V++L A A L K++H + + G + + L
Sbjct: 436 HEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSAL 495
Query: 237 MDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+D Y C + + +F VK L WN+
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMKVKDLVIWNS 525
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 44/192 (22%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH M + L D A + RLVF ++ + NS+ GY +
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+ + EA + E+ + PD F F ++ + A + + ++ H Q +K GL + ++
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT 593
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N L++MY+ C + + +A+++ +M E ++
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIE 653
Query: 193 PNAVTLVNVLTA 204
PN +T V VL+A
Sbjct: 654 PNYITFVGVLSA 665
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 36/224 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSC 135
+ R VF ++ + + +++V + ++ E+ + + E + P+ ++ S ++C
Sbjct: 97 YARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQAC 156
Query: 136 ADI-----YVEKQLHSQAIKFGLASDSFLHNTLINMY----------------------- 167
+ + ++ QL S +K G D ++ LI+ Y
Sbjct: 157 SGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVT 216
Query: 168 -----SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
S C + + ++++FY++ +NV P+ L VL+A + L K++H +
Sbjct: 217 WTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
G L L+D+Y KC V A LF M P N W
Sbjct: 277 RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGM--PNKNIISW 318
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++NP + + N+++ G+ + +++M+++G P+ F F S+ +SC+ D
Sbjct: 209 VFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLD 268
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
KQ+H+ IK D F+ L++MY+ CL
Sbjct: 269 PEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISG 328
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
DQ ++A+K F +M+ E +KPN TL + L+ + L +++H ++G +
Sbjct: 329 YAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGD 388
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + + L+D Y KC + A +F + + WN
Sbjct: 389 IFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWN 424
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 48/258 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFDP------------CAD-YHVRLVFSQISNPTIYTCNSIV 97
++RE K +HA LR+ D C Y VF++I NP + ++++
Sbjct: 65 GSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMI 124
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLA 154
G + EA +H M +G P++F SL + D+ + +H K+G
Sbjct: 125 TGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE 184
Query: 155 SDSFLHNTLINMYSSCWCLDQ----------PD------------------EAIKIFYRM 186
SD+ + N LI MY C++ PD +IFY+M
Sbjct: 185 SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQM 244
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+E KPN T ++VL + + D K+VH + ++ + T L+D Y K + +
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCL 304
Query: 247 SRAWDLFVKM----LFPW 260
A F ++ +F W
Sbjct: 305 EDAGVAFDRLVNRDIFSW 322
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 48/211 (22%)
Query: 42 FCLVS-LEKCSTMRE---LKQIHAQMLRTSLFFD-----PCADYHVR--------LVFSQ 84
F +S L CS++ + KQ+HA +++ S D D + + + F +
Sbjct: 254 FTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDR 313
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVE 141
+ N I++ I+ GY + +A ++ +M +G+ P+ + S C A +
Sbjct: 314 LVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG 373
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------------- 174
+QLH+ A+K G D F+ + L+++Y C C++
Sbjct: 374 RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQH 433
Query: 175 -QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q ++A++ F M E + P+ T + VL+A
Sbjct: 434 GQGEKALEAFRMMLSEGIMPDEATFIGVLSA 464
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 35/203 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+++ GY + + +M +F ++ K CA+ + K LH+ A++
Sbjct: 20 NALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALR 79
Query: 151 FGLASDSFLHNTLINMYSSC--------------------WC-----LDQ---PDEAIKI 182
G D FL +L++MYS C W LDQ EA ++
Sbjct: 80 SGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAEL 139
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F+ M + +PN TL ++++ DLR + +H C+ + GF S + L+ Y K
Sbjct: 140 FHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMK 199
Query: 243 CKFVSRAWDLFVKMLFP----WN 261
+ V +F M P WN
Sbjct: 200 SRCVEDGNKVFEAMTNPDLVSWN 222
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLV 81
++Y CL +T+ +Q+HA ++ F D C + H +
Sbjct: 353 NEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCME-HAEAI 411
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
F + + I + N+I+ GY+ +A + M+ +G++PD F + +C+
Sbjct: 412 FKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACS 466
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 141/351 (40%), Gaps = 89/351 (25%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------------CADYHVRLVFSQISNPTI 90
L C+T++E+KQIHAQ++ + +P DY +L+ + +NPT+
Sbjct: 16 LNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLL-NHNNNPTL 74
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI---VQGLIPDRFMFPSLFKSCADIYVEKQ---L 144
+T NS++R Y+ + ++F FY ++ L PD + F L ++CA + +
Sbjct: 75 FTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCV 134
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD----------------- 177
H IK G D + L+ MY+ CL +PD
Sbjct: 135 HGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDI 194
Query: 178 --------------------------------EAIKIFYRMEIENVKPNAVTLVNVLTAR 205
EA+ +F+ M++E VK N V++V VL+A
Sbjct: 195 DFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSAC 254
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQ 265
+ L + VH V+ V L T L+D Y KC V RA +F M N
Sbjct: 255 THLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGM--KERNVYT 312
Query: 266 WAMSATVGPQGLVGRHSTAHQISGPCPKKA---HKLFFFSMLKKVHVPGVL 313
W S+ +G + G + + ++ + + F S+LK V G++
Sbjct: 313 W--SSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLV 361
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF QI +PT + N+++RG + +A +FY + +G+ PD FP + K+CA
Sbjct: 896 VFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCA 955
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
K Q+H+ IK G D F+ N+LI +Y++C L
Sbjct: 956 PKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGG 1015
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++ E + +F M+ E V+ + VT+V V++A D + + ++ +
Sbjct: 1016 YSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVD 1075
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L TL+D YC+ + A +F +M
Sbjct: 1076 VYLGNTLIDYYCRIGQLQSAEKVFSQM 1102
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
CLV K +K + + + + F + RL+F Q+ + + ++ GYT
Sbjct: 529 CLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTR 588
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFL 159
L+ EA M+ G+ P ++ + ++ I + + L+ K G+ SD+ +
Sbjct: 589 ACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARV 648
Query: 160 HNTLINMYSSCWC-----------LDQPD------------------EAIKIFYRMEIEN 190
N+LI++Y+ LD+ + EA+++F M
Sbjct: 649 GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG 708
Query: 191 VKPNAVTLVNVLTA 204
+KPN +T ++V+ A
Sbjct: 709 IKPNRITFLSVINA 722
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 37/236 (15%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNP 88
F L + K +E +Q+H +++ D C R VF+++
Sbjct: 945 FVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVK 1004
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--------ADIYV 140
+ + NS++ GY+ N E + M + + D+ + +C AD V
Sbjct: 1005 DVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMV 1064
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
H+ + D +L NTLI+ Y + Q A K+F +M+ N VTL
Sbjct: 1065 RYIEHNH-----IEVDVYLGNTLIDYYCR---IGQLQSAEKVFSQMK----DKNTVTLNA 1112
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++TA A+ +L + K++ + S ++++ AY + S + +LF +M
Sbjct: 1113 MITAYAKGGNLVSAKKIFDQIPNKDLISW----SSMICAYSQASHFSDSLELFRQM 1164
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
VF Q P + ++ Y++ EA LF H Q L D F+F + K+CA +
Sbjct: 440 VFDQSPAP----WRAFLKAYSHGPFPLEALHLFKHAR--QHLADDTFVFTFVLKACAGLG 493
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
QLH+ ++ G +++H LIN+Y CL EA K+F M ++NV
Sbjct: 494 WHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCL---VEARKVFDEMPVKNV 545
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+FL NTL+ + D P +AI + + + + +KP+ +T VL A A+ + ++
Sbjct: 905 TFLWNTLLRGLAQS---DAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQ 961
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
+H V + GF + + +L+ Y C ++ A +F +ML WN+
Sbjct: 962 MHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNS 1011
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 121/267 (45%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP--CA---DYHVRL--------VFSQISNPTI 90
L C++ L +QIH+Q ++T F+ C+ D + +L + +++ +
Sbjct: 499 LRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDV 558
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GYT +L EA + EM+ +G+ D F S +CA I +Q+H+Q
Sbjct: 559 VSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQ 618
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+ G + D + N L+++Y+ C + + +EA
Sbjct: 619 SYISGYSEDLSIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEA 678
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+KIF +M N+K + T + ++A A +++ K++H + ++GF S +E+ L+
Sbjct: 679 LKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTGFDSEIEVSNALITL 738
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC + A F ++ P N W
Sbjct: 739 YAKCGCIDGAKREFFEI--PEKNEISW 763
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 52/262 (19%)
Query: 56 LKQIHAQMLR-----TSLFFDPCADYHV--------RLVFSQISNPTIYTCNSIVRGYTN 102
++QIHA ++ +S+ +P D + R VF ++ + +++ Y+
Sbjct: 208 VEQIHASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQ 267
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFL 159
EA + EM + GL P ++F S+ +CA I + +QLH+ K G ++++
Sbjct: 268 NGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYV 327
Query: 160 HNTLINMYSSCW-------------CLDQ---------------PDEAIKIFYRMEIENV 191
N L+ +YS C D+ D A+++F +M+++++
Sbjct: 328 CNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHL 387
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
KP+ VT+ ++L+A A + L +++H ++G + ++ +L+D Y KC ++ A
Sbjct: 388 KPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHK 447
Query: 252 LFVKM----LFPWN----NYGQ 265
F + WN YGQ
Sbjct: 448 FFATTQTENVVLWNVMLVAYGQ 469
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 114/259 (44%), Gaps = 51/259 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADY---HVRLVFSQISNP 88
L C++++ L +Q+H+ ++ + D C+D H +Q N
Sbjct: 398 LSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENV 457
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
++ N ++ Y + ++F + +M ++GLIP++F +PS+ ++C + + +Q+H
Sbjct: 458 VLW--NVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGALDLGEQIH 515
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------QPD--- 177
SQAIK G + ++ + LI+MY+ LD Q D
Sbjct: 516 SQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHDLFT 575
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F M ++ + + + ++A A + L +++H SG+ + + L+
Sbjct: 576 EALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYISGYSEDLSIGNALV 635
Query: 238 DAYCKCKFVSRAWDLFVKM 256
Y +C + A F K+
Sbjct: 636 SLYARCGRIQEANLAFEKI 654
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP----------------- 176
K+LHS+ +K G +S L + LI Y + L D P
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVAN 166
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR-DLRTVKRVHKCVDESGFWSHVEL 232
+ + +F +M ENV PN VT+ +VL A V+++H + G +
Sbjct: 167 KTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIA 226
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+D Y K F+ A +F ++
Sbjct: 227 CNPLIDLYAKNGFIRSARKVFDEL 250
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 128/324 (39%), Gaps = 89/324 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY---------------HVRLVFSQISNPTIY 91
+ +C T R LKQIHA ++T P A + R FSQI +P +
Sbjct: 22 ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCF 81
Query: 92 TCNSIVRGYTNKN---LHH----EAFLFYHEMIVQGLI-PDRFMFPSLFKSCAD---IYV 140
+ N+I+R + + L H EA L++ M+ GL+ P++F FP + K+CA I
Sbjct: 82 SWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEE 141
Query: 141 EKQLHSQAIKFG--------------------------------LASDSFLHNTLINMY- 167
KQLH +K G L + L N +I+ Y
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYV 201
Query: 168 ---------------------------SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
S C EAI++F+ M++ +V PN VTLV+
Sbjct: 202 RMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVS 261
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW 260
VL A +R + K VH +++ L + L+D Y KC + +A +F +
Sbjct: 262 VLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR--- 318
Query: 261 NNYGQWAMSATVGPQGLVGRHSTA 284
N SA +G + GR A
Sbjct: 319 NKKNPITWSAIIGGLAMHGRARDA 342
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 35/241 (14%)
Query: 70 FDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D+ F+++ + NSI+ G H EA ++ M G D
Sbjct: 282 YSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTL 341
Query: 129 PSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC------WCL------ 173
+L +SC D + K +HS I++G + F+ N+LI+ YS C W L
Sbjct: 342 VNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKT 401
Query: 174 ----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+PDEAI +F M KPN VT++++L A + + DL+ K
Sbjct: 402 KDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWA 461
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
H G + V + T ++D Y KC + + F ++ P N W AM A G G
Sbjct: 462 HGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQI--PEKNIVSWGAMIAACGMNG 519
Query: 277 L 277
L
Sbjct: 520 L 520
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 44/250 (17%)
Query: 51 STMRELKQIHAQMLRTSLFFDPC---------AD---YHVRLVFSQISNPTIYTCNSIVR 98
M E ++H ++R+ P AD +F ++ + + + ++
Sbjct: 150 GAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDEMCERDVISWSVMIG 209
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
GY A + EM I D S+ K+CA DI + + +H I GL
Sbjct: 210 GYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLD 269
Query: 155 SDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIKIFYRM 186
D F+ N++I+MYS C W ++ EA+ +FY M
Sbjct: 270 YDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSM 329
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ + VTLVN+L + D K +H V G+ + + +L+DAY KC +
Sbjct: 330 GKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLI 389
Query: 247 SRAWDLFVKM 256
AW LF ++
Sbjct: 390 ELAWKLFDRL 399
>gi|224148148|ref|XP_002336601.1| predicted protein [Populus trichocarpa]
gi|222836288|gb|EEE74709.1| predicted protein [Populus trichocarpa]
Length = 223
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPTIYT 92
LE C+T+ LK IHA ++R FD A DY + VF QI NP ++
Sbjct: 22 LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQ-VFYQIQNPNLFI 80
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAI 149
NS +RG++ ++F FY + GL+PD +P L K+C + + Q H Q I
Sbjct: 81 YNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQII 140
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
+ G SD ++ N+L+ MYS+ L A +F R+ +V V+ +++ ++
Sbjct: 141 RHGFDSDVYVQNSLVTMYST---LGDIKSASYVFRRISCLDV----VSWTSMVAGYIKSG 193
Query: 210 DLRTVKRVHKCVDESGF--WS 228
D+ + +++ + E WS
Sbjct: 194 DVTSARKLFDKMPEKNLVTWS 214
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 69/260 (26%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD---- 75
++N +N+ H L L+ CS+ +LK IH +LRT L D C D
Sbjct: 1 MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTF 60
Query: 76 -------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ +FSQI NP ++ N ++R ++ +AF FY +M+ + PD F
Sbjct: 61 NKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 120
Query: 129 PSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
P L K+ ++ + V +Q HSQ ++FG +D ++ N+L++MY++C + A +IF +
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAA---AGRIFGQ 177
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M +V W T+++ YCKC
Sbjct: 178 MGFRDVVS---------------------------------W------TSMVAGYCKCGM 198
Query: 246 VSRAWDLFVKM----LFPWN 261
V A ++F +M LF W+
Sbjct: 199 VENAREMFDEMPHRNLFTWS 218
>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
Length = 1154
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 116/273 (42%), Gaps = 46/273 (16%)
Query: 27 DNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPC----ADY------ 76
+++N ++ +A+ C+ +++C T+ LK +HA +L++ L C A Y
Sbjct: 455 EHMNQGEVHMGMKAN-CIALIKQCVTLEALKSLHASILKSHLHPHLCTSLIAQYASLGSI 513
Query: 77 -HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
H +FS + ++ N I+R ++N + Y M+ G+ F FP L K+C
Sbjct: 514 SHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKAC 573
Query: 136 ---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------ 174
AD + + H+ + FG SD F+ N+L+ MY C D
Sbjct: 574 GCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWS 633
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ +E + +F+RM E + PN ++VN + R + RV V ++
Sbjct: 634 SMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRV---VIDN 690
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G S ++ M Y +C + A F +L
Sbjct: 691 GLDSDQSVQNAAMGMYARCGRIDVARRFFYGIL 723
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C D+ R VF ++ + + +S+V Y + + E L + M+ +G+ P+R S+
Sbjct: 613 CFDFS-RQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNR---GSIV 668
Query: 133 KSCADIYVEKQLHS---QAIKFGLASDSFLHNTLINMYSSC------------------- 170
+ A I+ E + I GL SD + N + MY+ C
Sbjct: 669 NAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLV 728
Query: 171 -WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
W D P A+++F +M++ + P++VTL++++ A + + + VH +
Sbjct: 729 AWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVI 788
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S F +H+ L T ++D Y KC + A F +M
Sbjct: 789 TRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 823
>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
Length = 849
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 136/312 (43%), Gaps = 52/312 (16%)
Query: 55 ELKQIHAQ-----------MLRTSLF--FDPCAD-YHVRLVFSQISNPTIYTCNSIVRGY 100
E ++IHA+ +L T+L + C D +H +VF Q N + CN+++ Y
Sbjct: 200 EARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAY 259
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYVEKQL-HSQAIKFGLASDS 157
+A ++ + GL P++ + LF++CA +Y + ++ H I L D
Sbjct: 260 IQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDV 319
Query: 158 FLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIE 189
++ L++MYS C L+ DEA++++ ME
Sbjct: 320 VVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAA 379
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
V+P+ +T VNVL + + A L + +HK V ++G+ S + + + L+ Y C + A
Sbjct: 380 GVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDA 439
Query: 250 WDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA----HQISGPCPKKAHKLFFFSMLK 305
D+F K + ++ W T + GR + A + G +A+ + F S +
Sbjct: 440 VDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGV---RANVVTFVSTID 496
Query: 306 KVHVPGVLIQVH 317
G L++ H
Sbjct: 497 ACSSIGALVEGH 508
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 37/221 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++ + T N ++ GY + EA Y M G+ PD F ++ +SC+
Sbjct: 339 RRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLA 398
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------- 173
+ + +H + G S + + LI MYS+C L
Sbjct: 399 EHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTA 458
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ A+ +F +M++E V+ N VT V+ + A + L + + V +G
Sbjct: 459 MLTALTRNGEGRSALALFRKMDLEGVRANVVTFVSTIDACSSIGALVEGHAIFERVIVTG 518
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
V L T+L++ Y KC + A ++F K + WN
Sbjct: 519 HLIDVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNT 559
>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 35/243 (14%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D+ F+++ + NSI+ G H EA ++ M G D
Sbjct: 295 MYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVT 354
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC------WCL----- 173
+L +SC D + K +HS I++G + F+ N+LI+ YS C W L
Sbjct: 355 LVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLK 414
Query: 174 -----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+PDEAI +F M KPN VT++++L A + + DL+ K
Sbjct: 415 TKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKW 474
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQ 275
H G + V + T ++D Y KC + + F ++ P N W AM A G
Sbjct: 475 AHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQI--PEKNIVSWGAMIAACGMN 532
Query: 276 GLV 278
GL
Sbjct: 533 GLA 535
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 44/250 (17%)
Query: 51 STMRELKQIHAQMLRTSLFFDPC---------AD---YHVRLVFSQISNPTIYTCNSIVR 98
M E ++H ++R+ P AD +F ++ + + + ++
Sbjct: 164 GAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDEMCERDVISWSVMIG 223
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
GY A + EM I D S+ K+CA DI + + +H I GL
Sbjct: 224 GYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLD 283
Query: 155 SDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIKIFYRM 186
D F+ N++I+MYS C W ++ EA+ +FY M
Sbjct: 284 YDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSM 343
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ + VTLVN+L + D K +H V G+ + + +L+DAY KC +
Sbjct: 344 GKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLI 403
Query: 247 SRAWDLFVKM 256
AW LF ++
Sbjct: 404 ELAWKLFDRL 413
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMR---ELKQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISNPTI 90
L+ C+ R E K+IHAQM+ +++ + VF ++ +
Sbjct: 34 LQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDV 93
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ NS++ Y + +AF + EM G IP++ + S+ +C A++ K++HSQ
Sbjct: 94 ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQ 153
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
IK G D + N+L++MY C L + E
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKEC 213
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F +M E + P+ VT +N+L A L KR+HK E G S + + T L+
Sbjct: 214 LGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM 273
Query: 240 YCKCKFVSRAWDLF 253
+C V A F
Sbjct: 274 CVRCGDVDSAKQAF 287
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R +F + + + N+I+ GY + EA Y +M +G+ P R
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433
Query: 128 FPSLFKSCAD--IYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
F L +CA+ Y + K +H ++ G+ S+ L N L+NMY C L +
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+ A K+F M+ E ++P+ +T +VL+ L K+
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+H + ESG V L L++ Y +C + A ++F
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTI 90
L C + EL K+IH+Q+++ DP C D R VF+ IS +
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQ 147
+ N+++ Y K E + +M +G+ PD+ + +L F + + + K++H
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI------------------------- 182
++ GL SD + L+ M C +D +A K
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEA 314
Query: 183 ---FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+YRM + V N T +++L A + ++ L K +H + E G S V++ L+
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISM 374
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y +C + +A +LF M L WN
Sbjct: 375 YARCGDLPKARELFYTMPKRDLISWN 400
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 52/274 (18%)
Query: 51 STMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNSIV 97
S + K IH +LR+ + + C + VF + + NS++
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
G+ + A+ + EM + L PD F S+ C + + + KQ+H + + GL
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564
Query: 155 SDSFLHNTLINMYSSC--------------------W------CLDQPDE--AIKIFYRM 186
D L N LINMY C W C DQ ++ AI++F++M
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ E +P T ++L + L K+V + SG+ + L+ AY K +
Sbjct: 625 QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSM 684
Query: 247 SRAWDLFVKM----LFPWN----NYGQWAMSATV 272
+ A ++F KM + WN Y Q + T
Sbjct: 685 TDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTA 718
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 65/306 (21%)
Query: 5 LPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQML 64
L L Q + +S D INL L + S + E K+IH +
Sbjct: 214 LGLFGQMSSEGISPDKVTYINL-----------------LDAFTTPSMLDEGKRIHKLTV 256
Query: 65 RTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL 111
L D C D + F ++ + N+++ + EAF
Sbjct: 257 EEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFE 316
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
Y+ M G+ +R + S+ +C+ + K +HS + G +SD + N LI+MY+
Sbjct: 317 QYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYA 376
Query: 169 SCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVTLVN 200
C L + EA++++ +M+ E VKP VT ++
Sbjct: 377 RCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLH 436
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKM 256
+L+A A + K +H+ + SG S+ L LM+ Y +C + A ++F +
Sbjct: 437 LLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARD 496
Query: 257 LFPWNN 262
+ WN+
Sbjct: 497 VISWNS 502
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 32/214 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ + I + N I+ GY L A F ++M Q ++P++F F SL +C+
Sbjct: 687 AREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSS 746
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
+ K++H++ +K L D + LI+MY+ C + E
Sbjct: 747 FSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAM 806
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESG 225
A+ F ME E +KP+ T ++L+A A + ++ ++ E G
Sbjct: 807 INAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYG 866
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+E L+ + + A L +M FP
Sbjct: 867 VLPTIEHYGCLVGLLGRARRFQEAETLINQMPFP 900
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 124 DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC---------- 170
+R + +L ++C + K++H+Q ++ + D FL N LINMY C
Sbjct: 26 ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85
Query: 171 ----------W-----CLDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
W C Q +A ++F M+ PN +T +++LTA +L
Sbjct: 86 KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN-YGQWA 267
K++H + ++G+ ++ +L+ Y KC + RA +F + + +N G +A
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 268 MSATVGP-QGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
A V GL G+ S+ G P K+ + ++L P +L
Sbjct: 206 QKAYVKECLGLFGQMSS----EGISPD---KVTYINLLDAFTTPSML 245
>gi|302762022|ref|XP_002964433.1| hypothetical protein SELMODRAFT_82035 [Selaginella moellendorffii]
gi|300168162|gb|EFJ34766.1| hypothetical protein SELMODRAFT_82035 [Selaginella moellendorffii]
Length = 490
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 106/264 (40%), Gaps = 51/264 (19%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTIYTCNS 95
+ + E +++HA +LR+ L D C R F I +P +Y+
Sbjct: 63 RAGDLAEAERVHAAVLRSGLGGDRFLSNLLVEMYGRCGGVEGSRTAFDAIESPNVYSWTL 122
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LH---SQAI 149
++ Y H EA M + G+ D F + ++F + + Q LH S ++
Sbjct: 123 LIAAYARNGHHREAMEALRRMDLDGVEADAFTYSTIFNMISRKEMLPQARWLHERVSTSL 182
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIK 181
+ GL D FL ++NMY C + + EA K
Sbjct: 183 ELGLNRDIFLGTAIVNMYGKCGSIHDAEEMFFRMEHRDVVAWNAMLSAYAHNGYELEAAK 242
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F ME E VK + V V++L A ++ DL K VH V E GF + L L++ Y
Sbjct: 243 LFQEMEHEGVKADRVVFVSLLEACSKLGDLEQGKVVHGRVTELGFEAEDVLGHALVNLYG 302
Query: 242 KCKFVSRAWDLFVKM----LFPWN 261
KC + A LF K+ + WN
Sbjct: 303 KCGALEEARSLFGKIVSKNVVSWN 326
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTC 93
L+ C + ELK+IHA +++ SL D C + + L+F ++++P +
Sbjct: 21 LKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLY 80
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQG-----LIPDRFMFPSLFKSCADIY---VEKQLH 145
N+++R Y + ++ A Y +M+ + PD+F FP + KSCA + + KQ+H
Sbjct: 81 NAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVH 140
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
KFG S++ + N+L+ MY C D D+A K+F M + +AV+ +++
Sbjct: 141 GHVFKFGQKSNTVVENSLVEMYVKC---DSLDDAHKVFEEM----TERDAVSWNTLISGH 193
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R +R + + + + + +S T ++ Y + + A + F +M
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSW----TAIVSGYARIGCYADALEFFRRM 240
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 40/200 (20%)
Query: 49 KCSTMRELKQIHAQML-RTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRG 99
KC ++ + ++ +M R ++ ++ HVRL +F ++ + TI++ +IV G
Sbjct: 164 KCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSG 223
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASD 156
Y + +A F+ M + G+ PD S+ +CA + + K +H A K G +
Sbjct: 224 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRN 283
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+ N LI MY+ C +D+ EAI++F M+
Sbjct: 284 ICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQK 343
Query: 189 ENVKPNAVTLVNVLTARARA 208
++PN +T V +L+A A A
Sbjct: 344 AKIEPNIITFVGLLSACAHA 363
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
F +++ Y+ C +A++ F RM++ ++P+ ++LV+VL A A+ L K +
Sbjct: 215 FSWTAIVSGYARIGCYA---DALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWI 271
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H D++GF ++ + L++ Y KC + LF +M
Sbjct: 272 HFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQM 310
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 121/269 (44%), Gaps = 47/269 (17%)
Query: 53 MRELKQIHAQM----------LRTSLFFDPCAD---YHVRLVFSQISNPTIYTCNSIVRG 99
+R L+Q HA + L T L CA + R +F +S+P + NS+++
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA 82
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASD 156
+N +A FY M+ ++P + F S+ K+CAD+ + + +HS G AS+
Sbjct: 83 SSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASN 142
Query: 157 SFLHNTLINMYS-SCW------CLDQ---------------------PDEAIKIFYRMEI 188
SF+ L+ Y+ SC D+ EA+++F +M
Sbjct: 143 SFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRE 202
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+P++ T V+VL+A ++ L +H+C+ +G +V L T+L++ + +C V R
Sbjct: 203 SGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGR 262
Query: 249 AWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
A +F M N W AM + G G
Sbjct: 263 ARAVFDSM--NEGNVVSWTAMISGYGMHG 289
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 117/266 (43%), Gaps = 54/266 (20%)
Query: 48 EKCSTMRELKQIHA-----QMLRTSL---------FFDPCADY-HVRLVFSQISNPTIYT 92
E+C +++ K IH Q++ SL + C+D+ R VF +I ++++
Sbjct: 74 ERC--LKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFS 131
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAI 149
++ G T + + ++ E++ ++PD + + ++C I V + +H+Q I
Sbjct: 132 WTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVI 191
Query: 150 KFGLASDSFLHNTLINMYS-------SCWCLDQPD---------------------EAIK 181
G +S +F++ +L+ MY+ SC + + EA
Sbjct: 192 TRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYN 251
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F RM E ++PN ++V A + D+ + +++ E G S++ + T L+D +
Sbjct: 252 SFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFA 311
Query: 242 KCKFVSRAWDLFVKML------FPWN 261
KC V+ +W +FV PWN
Sbjct: 312 KCGCVTESWSVFVSNFSGCGVNLPWN 337
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 38/225 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ + N + N+++ G+ + L+ EA+ + M+ + + P+ F S+ K+ D
Sbjct: 221 VFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGD 280
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + ++ A + G+ S+ + LI+M++ C C+ +
Sbjct: 281 VEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMI 340
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+EA+ +F RM N+K + T + L + A R L VK++H + +SG
Sbjct: 341 SGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSI 400
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATV 272
V L LMDAY KC + D K+ W Q + + V
Sbjct: 401 G-VSLCNALMDAYAKCGEL----DAMRKLFDTWEESNQISWTTLV 440
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVEKQLHSQAI 149
N+++ G+T EA L + M + D + + S S AD+ YV KQLH
Sbjct: 337 NAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYV-KQLHGMIW 395
Query: 150 KFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIK 181
K G S L N L++ Y+ C LD + ++A+
Sbjct: 396 KSGSIGVS-LCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALS 454
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F +M +PN VT VL + A L ++VH ++GF +++ L+D Y
Sbjct: 455 VFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYA 514
Query: 242 KCKFVSRAWDLFVKMLFP 259
KC V A +F + P
Sbjct: 515 KCGSVRDAIKVFESLKDP 532
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 109/283 (38%), Gaps = 44/283 (15%)
Query: 18 SDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLF-------- 69
+ + L+ L NN Y L S+ ++ +KQ+H + ++
Sbjct: 349 GEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNAL 408
Query: 70 ---FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
+ C + +R +F + ++V Y+ + +A + +M G P++
Sbjct: 409 MDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQ 468
Query: 126 FMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------C 172
F + SCA + +Q+HS K G A D + + LI+MY+ C
Sbjct: 469 VTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFES 528
Query: 173 LDQPD------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
L PD +A+++F +ME+ PN+ T + +L A + +
Sbjct: 529 LKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEG 588
Query: 215 KRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R ++E G +E ++D + ++ AW +KM
Sbjct: 589 LRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKM 631
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 40/225 (17%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C D +VFS++ + + +++ GY L +A Y M +G++PD S+
Sbjct: 346 CWD-EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVL 404
Query: 133 KSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+CA + + + LH A + GL S + N+LI+MYS C C+D+ A+++F+R+ +
Sbjct: 405 SACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK---ALEVFHRIPNK 461
Query: 190 NV------------------------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
NV KPN+VTLV+VL+A AR L K +H
Sbjct: 462 NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHA 521
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF---VKMLFPWN 261
+G L L+D Y +C + AW+ F K + WN
Sbjct: 522 HALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWN 566
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 45/281 (16%)
Query: 23 LINLDNINNNNINSQYQAHFCLVSL-EKCSTMRELKQIHAQMLRT-------------SL 68
LI+LD++ ++ + + + L+ L E E ++H+ + +T S+
Sbjct: 79 LIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSM 138
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F VF +++ +++ N +V GY EA YH M+ G+ PD + F
Sbjct: 139 FVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------ 173
P + ++C D+ +++H I++G SD + N LI MY C +
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258
Query: 174 ----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
D E +++F+ M V P+ +T+ +V++A D R + V
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
H V ++GF + V + +L+ + A +F KM F
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 117/267 (43%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCAD-YHVRLVFSQISNPTI 90
L C + +L +++H ++R D C D + RLVF ++
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDR 261
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY ++ E + M + PD S+ +C D + +++H
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGY 321
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
IK G ++ ++N+LI M+SS C D+ P++A
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ + ME E V P+ +T+ +VL+A A L +H+ D +G S+V + +L+D
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC+ + +A ++F ++ P N W
Sbjct: 442 YSKCRCIDKALEVFHRI--PNKNVISW 466
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 119/293 (40%), Gaps = 59/293 (20%)
Query: 56 LKQIHAQMLRTSLFFD---PCADYHV----------RLVFSQISNPTIYTCNSIVRGYTN 102
+K++H+ LR L D A H+ RLVF +++ I T NS++ G
Sbjct: 226 VKEVHSHALRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQ 285
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLF-KSCADIYV---EKQLHSQAIKFGLASDSF 158
EAF + +M +GL+PD + ++ +CA +++H A K GL D
Sbjct: 286 HGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVR 345
Query: 159 LHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIEN 190
+ N L++MY+ C +D EA +F +M+ E
Sbjct: 346 VGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREG 405
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
PN T +++L +A L VK VH + SH+ + L+ Y KC + A
Sbjct: 406 FVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENAR 465
Query: 251 DLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAH----QISGPCPKKA 295
+F +M + WN AM + G GR + +H Q G P A
Sbjct: 466 LVFDRMEDRDIISWN-----AMIGGLAQNGH-GREAFSHFLEMQREGFIPDAA 512
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 44/245 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RLVF ++ + I + N+++ G EAF + EM +G IPD S+ +CA
Sbjct: 465 RLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACAST 524
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
K++HS A++ GL SD + + L++ Y+ C +D
Sbjct: 525 RALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMASRDIITWNVMI 584
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ EA +F +M+ P+A+T +++L L VK VH+ +GF
Sbjct: 585 GGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEWVKEVHRHAVRAGFD 644
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP------WN-------NYGQWAMSATVGP 274
+ + + L+ Y KC + A F + P W N+G M+
Sbjct: 645 TDPRVSSALVHMYTKCGDIDNAKLHFTPNMLPDLDGTAWGDLLDACRNHGDVEMAVPTAE 704
Query: 275 QGLVG 279
G +G
Sbjct: 705 GGTIG 709
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 35/219 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF + ++ ++ GY N +A Y++M G+ P+ F ++ K+C
Sbjct: 60 REVFDTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSP 119
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ +++H G SD L N LI+MY+ C +D
Sbjct: 120 MALKWGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMI 179
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ EA +F +M+ E P+ T +++L A A L VK VH +G
Sbjct: 180 GRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLE 239
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
S V + T L+ Y + + A +F KM + WN+
Sbjct: 240 SDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNS 278
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 44 LVS-LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQIS 86
LVS L C++ R L K++H+ L L D C RLVF ++
Sbjct: 514 LVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMA 573
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQ 143
+ I T N ++ G HEAF + +M G +PD + S+ I K+
Sbjct: 574 SRDIITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEWVKE 633
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
+H A++ G +D + + L++MY+ C +D
Sbjct: 634 VHRHAVRAGFDTDPRVSSALVHMYTKCGDIDNA 666
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL--- 173
D+ + KQ+H IK + ++ N L+++Y C W +
Sbjct: 20 DLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIG 79
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ ++AI+++ +M V+PN +T N+L A L+ +++H + +GF S
Sbjct: 80 GYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQS 139
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ L L+ Y +C + A +F M + WN
Sbjct: 140 DLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWN 176
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 51/241 (21%)
Query: 63 MLRTSLFFDP---------CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
M+ T L DP CA +Y V+ + I NP ++ N +RG++
Sbjct: 1 MVITGLVLDPFASSRLIAFCALSESRYLNYCVK-ILKGIENPNAFSWNVTIRGFSESENP 59
Query: 107 HEAFLFYHEMIVQGLI---PDRFMFPSLFKSCADIYVEKQLH---SQAIKFGLASDSFLH 160
+A L Y +M+ +G PD F +P LFK CAD+ + H K L S +H
Sbjct: 60 KDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVH 119
Query: 161 NTLINMYSSC--------------------W-CL-------DQPDEAIKIFYRMEIENVK 192
N I+M++SC W CL + ++AI+++ ME E VK
Sbjct: 120 NASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVK 179
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ VT++ ++++ A DL K ++ V +G + L LMD + KC + A +
Sbjct: 180 PDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRI 239
Query: 253 F 253
F
Sbjct: 240 F 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 101/261 (38%), Gaps = 49/261 (18%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F C + + R VF + + + N ++ GY +A Y M +G+ PD
Sbjct: 125 MFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVT 184
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC------------ 172
L SCA D+ K+ + GL L N L++M+S C
Sbjct: 185 MIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLE 244
Query: 173 -----------LDQPD------------------EAIKIFYRMEIENVKPNAVTLVNVLT 203
+++ D +A+ +F M+ N P+ +T+++ L+
Sbjct: 245 KRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLS 304
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY 263
A ++ L +H+ +++ +V L T+L+D Y KC +S A +F +
Sbjct: 305 ACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGI----QTR 360
Query: 264 GQWAMSATVGPQGLVGRHSTA 284
+A +G L G STA
Sbjct: 361 NSLTYTAIIGGLALHGDASTA 381
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 40/225 (17%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C D +VFS++ + + +++ GY L +A Y M +G++PD S+
Sbjct: 346 CWD-EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVL 404
Query: 133 KSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+CA + + + LH A + GL S + N+LI+MYS C C+D+ A+++F+R+ +
Sbjct: 405 SACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK---ALEVFHRIPNK 461
Query: 190 NV------------------------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
NV KPN+VTLV+VL+A AR L K +H
Sbjct: 462 NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHA 521
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF---VKMLFPWN 261
+G L L+D Y +C + AW+ F K + WN
Sbjct: 522 HALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWN 566
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 45/281 (16%)
Query: 23 LINLDNINNNNINSQYQAHFCLVSL-EKCSTMRELKQIHAQMLRT-------------SL 68
LI+LD++ ++ + + + L+ L E E ++H+ + +T S+
Sbjct: 79 LIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSM 138
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F VF +++ +++ N +V GY EA YH M+ G+ PD + F
Sbjct: 139 FVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------ 173
P + ++C D+ +++H I++G SD + N LI MY C +
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258
Query: 174 ----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
D E +++F+ M V P+ +T+ +V++A D R + V
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
H V ++GF + V + +L+ + A +F KM F
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 117/267 (43%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCAD-YHVRLVFSQISNPTI 90
L C + +L +++H ++R D C D + RLVF ++
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDR 261
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY ++ E + M + PD S+ +C D + +++H
Sbjct: 262 ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGY 321
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
IK G ++ ++N+LI M+SS C D+ P++A
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ + ME E V P+ +T+ +VL+A A L +H+ D +G S+V + +L+D
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC+ + +A ++F ++ P N W
Sbjct: 442 YSKCRCIDKALEVFHRI--PNKNVISW 466
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 71/262 (27%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-----------CAD-- 75
++N +N+ H L L+ CS+ +LK IH +LRT L D C D
Sbjct: 1 MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDS 60
Query: 76 ---------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
+ +FSQI NP ++ N ++R ++ +AF FY +M+ + PD
Sbjct: 61 TFHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNI 120
Query: 127 MFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
FP L K+ + + V +Q HSQ ++FG +D ++ N+L++MY++C + A +IF
Sbjct: 121 TFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAA---AGRIF 177
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+M +V W T+++ YCKC
Sbjct: 178 GQMPFRDVVS---------------------------------W------TSMVAGYCKC 198
Query: 244 KFVSRAWDLFVKM----LFPWN 261
V A ++F +M LF W+
Sbjct: 199 GMVEDAREMFDEMPHRNLFTWS 220
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + ++T + ++ GY N +A + M +G++ + + S+ SCA +
Sbjct: 205 REMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHL 264
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186
++ H +K + + L L++MY W + ++AI++F +
Sbjct: 265 GALEFGERAHEYVVKSHMTVNLILGTALVDMY---WRCGEIEKAIRVFEEL 312
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 32/231 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTC 93
L+ C + ELK+IHA +++ SL D C Y + L+F +++P +
Sbjct: 21 LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLY 80
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI-----VQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
N+++R Y + ++ A Y +M+ + PD+F FP + KSCA + + KQ+H
Sbjct: 81 NAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVH 140
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
KFG S++ + N+L+ MY C D D+A ++F M + +AV+ +++
Sbjct: 141 GHVFKFGQKSNTVVENSLVEMYVKC---DSLDDAHRVFEEM----TERDAVSWNTLISGH 193
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R +R + + + + + +S T ++ Y + + A + F +M
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSW----TAIVSGYARIGCYADALEFFRRM 240
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 40/200 (20%)
Query: 49 KCSTMRELKQIHAQML-RTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRG 99
KC ++ + ++ +M R ++ ++ HVRL +F ++ + TI++ +IV G
Sbjct: 164 KCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSG 223
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASD 156
Y + +A F+ M + G+ PD S+ CA + + K +H A K G +
Sbjct: 224 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRN 283
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+ N LI MY+ C +DQ EAI++F M+
Sbjct: 284 ICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQK 343
Query: 189 ENVKPNAVTLVNVLTARARA 208
++P+ +T V +LTA A A
Sbjct: 344 AKIEPSIITFVGLLTACAHA 363
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE 141
F Q SN + NS+V Y + +A + EM + D + +L + +
Sbjct: 146 FGQKSNTVVE--NSLVEMYVKCDSLDDAHRVFEEMTER----DAVSWNTLIS--GHVRLG 197
Query: 142 KQLHSQAIKFGLASDS--FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
+ ++AI F D F +++ Y+ C +A++ F RM++ ++P+ ++LV
Sbjct: 198 QMRRARAI-FEEMQDKTIFSWTAIVSGYARIGCYA---DALEFFRRMQMVGIEPDEISLV 253
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+VL A+ L K +H D++GF ++ + L++ Y KC + + LF +M
Sbjct: 254 SVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQM 310
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 45/257 (17%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPC----ADY-------HVRLVFSQISNPTIY 91
C+ +++C T+ LK +HA +L++ L C A Y H +FS + ++
Sbjct: 7 CIALIKQCVTLEALKSLHASILKSHLHPHLCTSLIAQYASLGSISHAYALFSTSHSSNVF 66
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQA 148
N I+R ++N + Y M+ G+ F FP L K+C AD + + H+
Sbjct: 67 LWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHV 126
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAI 180
+ FG SD F+ N+L+ MY C D + +E +
Sbjct: 127 VVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGL 186
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F+RM E + PN ++VN + R + RV V ++G S ++ M Y
Sbjct: 187 LLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRV---VIDNGLDSDQSVQNAAMGMY 243
Query: 241 CKCKFVSRAWDLFVKML 257
+C + A F +L
Sbjct: 244 ARCGRIDVARRFFYGIL 260
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 39/224 (17%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C D+ R VF ++ + + +S+V Y + + E L + M+ +G+ P+R S+
Sbjct: 150 CFDFS-RQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNR---GSIV 205
Query: 133 KSCADIYVEKQLHS---QAIKFGLASDSFLHNTLINMYSSC------------------- 170
+ A I+ E + I GL SD + N + MY+ C
Sbjct: 206 NAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLV 265
Query: 171 -WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
W D P A+++F +M++ + P++VTL++++ A + + + VH +
Sbjct: 266 AWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVI 325
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S F +H+ L T ++D Y KC + A F +M L W+
Sbjct: 326 TRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWS 369
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 106/263 (40%), Gaps = 49/263 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTC 93
+C+T L Q+HA + T L P A + + VF P +
Sbjct: 8 FRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMW 67
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSC---ADIYVEKQLHSQAI 149
+++ Y EA YHEM+ Q F+FPS+ K+C D+ V ++H + I
Sbjct: 68 GVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVI 127
Query: 150 KFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIK 181
K G SD+ + +L+ MY CLD Q E +
Sbjct: 128 KCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLD 187
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F +M E V+P++VT+++V A + LR + VH V S+ L +L+ Y
Sbjct: 188 MFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYG 247
Query: 242 KCKFVSRAWDLF----VKMLFPW 260
K + A LF +M PW
Sbjct: 248 KLGDLYSAERLFENVPCRMTAPW 270
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 106/260 (40%), Gaps = 50/260 (19%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY----------------HVRLVFSQISN 87
L + + ++E + +H ++R ++ DP D+ VF I
Sbjct: 309 LCACARLGRVKEGRSVHGFVIRRAM--DPELDFLGPALMELYADTGNLRDCHKVFETIKE 366
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QL 144
TI + N+++ +T EA L + +M QGL+PD + S +C I + Q+
Sbjct: 367 KTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI 426
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------------------- 177
H IK G +D F+ N LI+MY+ C + +
Sbjct: 427 HGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYS 485
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EAI +F +M + VK + +T ++V+ A + L K VH + G L T L
Sbjct: 486 VEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTAL 545
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
D Y KC + A +F +M
Sbjct: 546 TDMYSKCGELQMAHGVFDRM 565
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 109/267 (40%), Gaps = 52/267 (19%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISN-------------PTI 90
L+ CS +L ++H ++++ D + + ++ ++S +
Sbjct: 107 LKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDV 166
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
+SIV + E + +MI + + PD S+ ++C+++ + + +H
Sbjct: 167 VAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGY 226
Query: 148 AIKFGLASDSFLHNTLINMY--------------------SSCW-----CLDQPD---EA 179
++ + S++ L+N+LI MY ++ W C +Q EA
Sbjct: 227 VVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEA 286
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE-LKTTLMD 238
+ +F +M+ ++PN VT+V VL A AR ++ + VH V ++ L LM+
Sbjct: 287 LNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 346
Query: 239 AYCKCKFVSRAWDLF----VKMLFPWN 261
Y + +F K + WN
Sbjct: 347 LYADTGNLRDCHKVFETIKEKTILSWN 373
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 44/244 (18%)
Query: 57 KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
KQ+H Q ++ D D +++ VF ++ + + S++ GY
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVEK--QLHSQAIKFGLASDSFLH 160
L+ +A + +M ++G+ P+ F F ++ AD VEK Q+H+ IK GL S F+
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231
Query: 161 NTLINMYSSCWCLDQPD----------------------------EAIKIFYRMEIENVK 192
N+++NMYS + EA ++FYRM +E VK
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
V+ A +++ K++H V ++G + +KT LM AY KC + A+ L
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351
Query: 253 FVKM 256
F M
Sbjct: 352 FCMM 355
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+ VF + N + NS++ G+ L EAF ++ M ++G+ + +F ++ K CA+I
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
KQLH Q IK G D + L+ YS C +D
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ D A+ +F +M E V+PN T +LTA A + ++H V ++ +
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV----SPSQIHALVVKTNY 423
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + T L D+Y K + A +F
Sbjct: 424 ENSPSVGTALSDSYSKIGDANEAAKIF 450
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 46/265 (17%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPC-----ADYHVRL--------VFSQISN 87
HF ++ + QIHA +++T+ P +D + ++ +F I
Sbjct: 396 HFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDE 455
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEKQ 143
I ++++ GY A + ++ +G+ P+ F F S+ +C A + KQ
Sbjct: 456 KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ 515
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------------- 178
HS +IK G ++ + + L+ MY+ ++ +E
Sbjct: 516 FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGC 575
Query: 179 ---AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWSHVELKT 234
++KIF M +N++ + +T + V++A A + +R V + +E +
Sbjct: 576 GKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYS 635
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFP 259
++D Y + + +A DL KM FP
Sbjct: 636 CMVDLYSRAGMLEKAMDLINKMPFP 660
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 106/263 (40%), Gaps = 51/263 (19%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPCADYHVRLVFSQISN--------------PTIYT 92
C+ ++E+ KQ+H Q+++ FD + + +S+ S + +
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFG 152
+I+ GY A + +M +G+ P+ F + ++ + A + Q+H+ +K
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS-PSQIHALVVKTN 422
Query: 153 LASDSFLHNTLINMYSSCW----------CLDQPD------------------EAIKIFY 184
+ + L + YS +D+ D A+KIF
Sbjct: 423 YENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFL 482
Query: 185 RMEIENVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
++ E V+PN T +VL A A + K+ H C +SGF + + + + L+ Y K
Sbjct: 483 QLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKR 542
Query: 244 KFVSRAWDLFVKM----LFPWNN 262
+ A ++F + L WN+
Sbjct: 543 GNIESANEVFKRQVDRDLVSWNS 565
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 83/295 (28%)
Query: 41 HFCLVSLEK-CSTMRELKQIHAQMLRTSLFFDPCA---------------DYHVRLVFSQ 84
H CL L+ C+T+ QI+ +++T L +P A +Y +L F +
Sbjct: 28 HPCLTMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKL-FVR 86
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVE 141
+ NP +Y+ N+I+R ++ + A + +M+ + P +PS+FK+ A + +
Sbjct: 87 MPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYG 146
Query: 142 KQLHSQAIKFGLASDSFLHNTLINM----------------------------------- 166
QLH + +K GL +D F+ NT+I M
Sbjct: 147 AQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMG 206
Query: 167 YSSCWCLDQPD----------------------------EAIKIFYRMEIENVKPNAVTL 198
Y+ C +D+ EA+++F +M++E + + T+
Sbjct: 207 YAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTM 266
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
V++L A A L+ K VH + + F +V + T ++D YCKC V A ++F
Sbjct: 267 VSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVF 321
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 52 TMRELKQIHAQMLRTSLFFD---------------PCADYHVRLVFSQISNPTIYTCNSI 96
++ E K+IHAQM+ + D +D H VF ++ + + NS+
Sbjct: 97 SLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAH--QVFLKMPRRDVISWNSL 154
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGL 153
+ Y + +AF + EM G IP + + S+ +C A++ K++HS+ I+ G
Sbjct: 155 ISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGY 214
Query: 154 ASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYR 185
D + N+L+NMY C L +E I +F +
Sbjct: 215 QRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQ 274
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M E + P+ VT +N+L A L KR+HK G S + + T L + +C
Sbjct: 275 MSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGD 334
Query: 246 VSRA 249
V+ A
Sbjct: 335 VAGA 338
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R +F+ + + + N+I+ GY + EA Y +M +G+ P R
Sbjct: 429 MYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488
Query: 128 FPSLFKSCAD--IYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
F L +C + Y + K +H ++ G+ S+ L N L+NMY C + +
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+ A K+F M+ E ++P+ +T +VL L ++
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+H + ESG V L L++ Y +C + A+++F
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVF 645
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 109/274 (39%), Gaps = 52/274 (18%)
Query: 51 STMRELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIV 97
S + K IH +LR+ + + C + VF I + NS++
Sbjct: 500 SAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMI 559
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
G+ + A+ + EM +GL PD+ F S+ C + + + +Q+H I+ GL
Sbjct: 560 AGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619
Query: 155 SDSFLHNTLINMYSSCWCL--------------------------DQPDE--AIKIFYRM 186
D L N LINMY C L DQ ++ A ++F++M
Sbjct: 620 LDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQM 679
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ + KP T ++L A + L K+V + SG+ + L+ AY K +
Sbjct: 680 QNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSM 739
Query: 247 SRAWDLFVKM----LFPWN----NYGQWAMSATV 272
+ A +F KM + WN Y Q + T
Sbjct: 740 TDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTA 773
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 48/260 (18%)
Query: 51 STMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNSIV 97
S + E K+IH + L F C D + ++ + N+++
Sbjct: 298 SMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALI 357
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
+ EAF Y++M G++ +R + S+ +C+ + + +HS + G +
Sbjct: 358 AALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHS 417
Query: 155 SDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRM 186
SD + N+LI+MY+ C L + EA+K++ +M
Sbjct: 418 SDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM 477
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ E VKP VT +++L+A + K +H+ + SG S+ L LM+ Y +C +
Sbjct: 478 QSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSI 537
Query: 247 SRAWDLF----VKMLFPWNN 262
A ++F + + WN+
Sbjct: 538 MEAQNVFEGTRARDIISWNS 557
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTI 90
L C + EL K+IH++++ DP C D R VFS I +
Sbjct: 190 LTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDV 249
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQ 147
+ N+++ Y K E + +M +G+ PD+ + +L F + + + K++H
Sbjct: 250 VSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKL 309
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A+ GL SD + L M+ C + +EA
Sbjct: 310 AVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEA 369
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +Y+M + V N T ++VL A + ++ L + +H + E G S V++ +L+
Sbjct: 370 FEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISM 429
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y +C + RA +LF M L WN
Sbjct: 430 YARCGDLPRARELFNTMPKRDLISWN 455
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ N I + N ++ GY L A F ++M QG++ ++F F S+ +C+
Sbjct: 742 ARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSS 801
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
+ K++H++ +K + D + LI+MY+ C L++ E
Sbjct: 802 FSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAM 861
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A+ F M+ E +KP+ T ++L+A
Sbjct: 862 INAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSA 899
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 31/161 (19%)
Query: 124 DRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------- 170
+R + L ++C + K++H+Q ++ G+ D FL N LINMY C
Sbjct: 81 NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140
Query: 171 ----------W-----CLDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
W C Q +A ++F M+ P+ +T +++LTA +L
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELE 200
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K++H + E+G+ ++ +L++ Y KC+ + A +F
Sbjct: 201 YGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVF 241
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
+ N V+++ R R L KR+H + E+G + L L++ Y KC+ VS A
Sbjct: 78 TETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAH 137
Query: 251 DLFVKM----LFPWNN 262
+F+KM + WN+
Sbjct: 138 QVFLKMPRRDVISWNS 153
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 44/244 (18%)
Query: 57 KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
KQ+H Q ++ D D +++ VF ++ + + S++ GY
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVEK--QLHSQAIKFGLASDSFLH 160
L+ +A + +M ++G+ P+ F F ++ AD VEK Q+H+ IK GL S F+
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231
Query: 161 NTLINMYSSCWCLDQPD----------------------------EAIKIFYRMEIENVK 192
N+++NMYS + EA ++FYRM +E VK
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
V+ A +++ K++H V ++G + +KT LM AY KC + A+ L
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351
Query: 253 FVKM 256
F M
Sbjct: 352 FCMM 355
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 38/222 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+ VF + N + NS++ G+ L EAF ++ M ++G+ + +F ++ K CA+I
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
KQLH Q IK G D + L+ YS C +D
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367
Query: 175 --------QPDEAIKIFYRMEI-ENVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDES 224
+ D A+ +F +M E V+PN T +VL A A + K+ H C +S
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 427
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
GF + + + + L+ Y K + A ++F + L WN+
Sbjct: 428 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNS 469
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 107/261 (40%), Gaps = 51/261 (19%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPCADYHVRLVFSQISN--------------PTIYT 92
C+ ++E+ KQ+H Q+++ FD + + +S+ S + +
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363
Query: 93 CNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCA----DIYVEKQLHSQ 147
+I+ GY A LF +G+ P+ F F S+ +CA + KQ HS
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC 423
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------------A 179
+IK G ++ + + L+ MY+ ++ +E +
Sbjct: 424 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKS 483
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWSHVELKTTLMD 238
+KIF M +N++ + +T + V++A A + +R V + +E + ++D
Sbjct: 484 LKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVD 543
Query: 239 AYCKCKFVSRAWDLFVKMLFP 259
Y + + +A DL KM FP
Sbjct: 544 LYSRAGMLEKAMDLINKMPFP 564
>gi|91806812|gb|ABE66133.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 230
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 69/260 (26%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD---- 75
++N +N+ H L L+ CS+ +LK IH +LRT L D C D
Sbjct: 1 MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTF 60
Query: 76 -------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ +FSQI NP ++ N ++R ++ +AF FY +M+ + PD F
Sbjct: 61 NKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 120
Query: 129 PSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
P L K+ ++ + V +Q HSQ ++FG +D ++ N+L++MY++C + A +IF +
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFI---AAAGRIFGQ 177
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M +V W T+++ YCKC
Sbjct: 178 MGFRDVVS---------------------------------W------TSMVAGYCKCGM 198
Query: 246 VSRAWDLFVKM----LFPWN 261
V A ++F +M LF W+
Sbjct: 199 VENAREMFDEMPHRNLFTWS 218
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 121/283 (42%), Gaps = 56/283 (19%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYH 77
N I + H + LE+CS+++EL+QI + + L+ + D
Sbjct: 29 NYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEA 88
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF I + +++++G+ + +A F+ M + P + F L K C D
Sbjct: 89 AR-VFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD 147
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-------- 186
+ V K++H +K G + D F L NMY+ C Q +EA K+F RM
Sbjct: 148 EAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC---RQVNEARKVFDRMPERDLVSW 204
Query: 187 -----------------EI------ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
E+ EN+KP+ +T+V+VL A + R + K +H
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
SGF S V + T L+D Y KC + A LF ML WN+
Sbjct: 265 SGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 307
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L+ C EL K+IH ++++ D C + R VF ++ +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+IV GY+ + A M + L P S+ + + I V K++H
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
A++ G S + L++MY+ C L+ P EA
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ IF +M E VKP V+++ L A A DL + +HK E G +V + +L+
Sbjct: 322 MLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
YCKCK V A +F K+ L WN
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWN 407
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNK 103
K+IH +R+ + C R +F + + + NS++ Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEKQ--LHSQAIKFGLASDSFLH 160
EA L + +M+ +G+ P +CAD+ +E+ +H +++ GL + +
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N+LI+MY C +D +P +A+ F +M VK
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ T V+V+TA A K +H V S +V + T L+D Y KC + A +
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLI 495
Query: 253 FVKM----LFPWN 261
F M + WN
Sbjct: 496 FDMMSERHVTTWN 508
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 114/258 (44%), Gaps = 46/258 (17%)
Query: 47 LEKCSTMRELKQIHAQMLR-----------TSLFFDPCADY----HVRLVFSQISNPTIY 91
L +CST+ E +QIHA++++ L C + R + +I N T+
Sbjct: 90 LNRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVP 149
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQA 148
+++R Y E F + M+ +G++PD+++ P++ K+C+ + + K +H
Sbjct: 150 AYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFV 209
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
I+ + SD F+ N LI+ YS+C L DEA
Sbjct: 210 IRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAK 269
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
IF+ M+++ VKP+ ++ +L+ AR ++ + + E G V ++
Sbjct: 270 HIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGC 329
Query: 241 CKCKFVSRAWDLFVKMLF 258
+ ++ A D+F +ML+
Sbjct: 330 VQNGYLEDALDMFSRMLW 347
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 47 LEKCSTM---RELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L+ CS M R K +H ++R S+ F+ C D R VF + +
Sbjct: 190 LKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDV 249
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQ 147
+ +++ Y + L EA +H M + G+ PD + +L F +I + + +
Sbjct: 250 VSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEE 309
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+ GL N +I S C ++A+ +F RM PN +T+ ++L A
Sbjct: 310 MPERGLQPTVNSWNGII---SGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTG 366
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+ LR K +H + G +V ++ +++D Y KC A +F K
Sbjct: 367 LKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXK 414
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 46/249 (18%)
Query: 57 KQIHAQMLR---------TSLFFDPCADYH----VRLVFSQISNPTIYTCNSIVRGYTNK 103
K+IH LR +S D A H VF +I + N+++ GY N
Sbjct: 557 KEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINN 616
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFL 159
EA + EM+ +GL P F LF +C DI + LH A K L + +
Sbjct: 617 KQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAI 676
Query: 160 HNTLINMYSSCWCL-------------DQP---------------DEAIKIFYRMEIENV 191
+ LI+MY+ C + D P A +F +ME+ +
Sbjct: 677 XSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGI 736
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAW 250
P+ +T V++L+A AR + + ++ S G + +E T ++ + A
Sbjct: 737 XPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEAL 796
Query: 251 DLFVKMLFP 259
D +M +P
Sbjct: 797 DFIRQMPYP 805
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 87/249 (34%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK-------------- 133
P + T N+I+ G+ L +A EM+ GL P+ F L
Sbjct: 453 PDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKV 512
Query: 134 ---------------------------------SCADIYV---EKQLHSQAIKFGLASDS 157
+CAD+ + K++H ++ G +
Sbjct: 513 FRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNI 572
Query: 158 FLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIE 189
F+ + L++MY+ C +D QP+EA+K+F M E
Sbjct: 573 FVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGE 632
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVH----KC-VDESGFWSHVELKTTLMDAYCKCK 244
++P+++T + + A +R + +H KC +DE + + L+D Y KC
Sbjct: 633 GLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDE----LKNAIXSALIDMYAKCG 688
Query: 245 FVSRAWDLF 253
+ A +F
Sbjct: 689 SILDAKSVF 697
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 115/262 (43%), Gaps = 38/262 (14%)
Query: 33 NINSQY-QAHFCLVSLEKCSTMRELKQIHAQMLRTSL--------------FFDPCADY- 76
N+N + A C EKCS+MR LK +HAQ++ L D D
Sbjct: 110 NVNGSHCPARLC----EKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQ 165
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ + +F QI P + NS++RGY+N + +A L + MI GL P+ F P + K+C
Sbjct: 166 YAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACG 225
Query: 137 --DIYVEKQL-HSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPDEAIKIFYR 185
Y E L H AIK G+ S F+ N LI +Y C + D D+ + +
Sbjct: 226 CKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNS 285
Query: 186 M-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M EI VK + + + A+ +L + + + E S T+++ AY +
Sbjct: 286 MIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSW----TSMISAYAQHG 341
Query: 245 FVSRAWDLFVKMLFPWNNYGQW 266
+ A +F +M P N W
Sbjct: 342 SIEVARQIFDQM--PGKNVVSW 361
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R +F Q+ + + NS++ Y + + EA +++M ++PD S+ +C
Sbjct: 347 RQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQL 406
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW--------CLDQPD---------- 177
D+ + K++H+ + A L+N+LI+MY+ C L+ P
Sbjct: 407 GDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVII 466
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F M+ + P+ +TL +L+A
Sbjct: 467 GALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSA 503
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 165 NMYSSCWCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
N SC+ + Q EA+ +F +M V P+ TLV++L A ++ DL K++H +
Sbjct: 362 NSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILS 421
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
+ V L +L+D Y KC V A D+F++M P N W + +G L G
Sbjct: 422 NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM--PGKNLVSW--NVIIGALALHG---- 473
Query: 284 AHQISGPCPKKAHKLF 299
C +A KLF
Sbjct: 474 -------CGLEAIKLF 482
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 51/263 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADYHVRLVFSQISNPTIYTCNSIV 97
L++C++ + L+QIH QM+ ++ F D + L+FSQI P Y N ++
Sbjct: 38 LKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMI 97
Query: 98 RGYTNK----NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
RG T NL E FY++M G+ P+ F +P +F +CA++ V + HS +K
Sbjct: 98 RGLTTTWQKFNLTIE---FYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLK 154
Query: 151 FGLASDSFLHNTLINMYSSCWCL-------DQPDE---------------------AIKI 182
GL +D + ++LI MYS C L D+ E A+ +
Sbjct: 155 SGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGL 214
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M +P+ +TLV++L A DL + V E+ + + + L+ Y K
Sbjct: 215 FGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGK 274
Query: 243 CKFVSRAWDLFVKM----LFPWN 261
C +S A +F +M + WN
Sbjct: 275 CGDLSSARRVFDRMVKKDVVTWN 297
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 99/255 (38%), Gaps = 54/255 (21%)
Query: 60 HAQMLRTSLFFDPCADYHVR-----------------LVFSQISNPTIYTCNSIVRGYTN 102
H+ +L++ L CAD HVR VF +IS + + NS++ GY+
Sbjct: 149 HSGVLKSGL----CADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSR 204
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFL 159
+A + EM G PD S+ +C D+ + + ++ + +SF+
Sbjct: 205 MGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFV 264
Query: 160 HNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENV 191
+ LI MY C L DEAI +F M V
Sbjct: 265 GSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGV 324
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P+ +TLV VL+A A L K + E G + + + T L+D Y KC + A
Sbjct: 325 NPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALR 384
Query: 252 LFVKMLFPWNNYGQW 266
+F M P N W
Sbjct: 385 VFEDM--PQKNEVSW 397
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 35/223 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R VF ++ + T N+++ GY + EA + + M G+ PD+
Sbjct: 271 MYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKIT 330
Query: 128 FPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
+ +CA I K L + A + GL +D ++ LI+MY+ C LD
Sbjct: 331 LVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMP 390
Query: 175 ------------------QPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTV 214
+P E++ +F RM E V+PN ++ + VL+A A +
Sbjct: 391 QKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEG 450
Query: 215 KRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+++ + S G +E + ++D + V AWD KM
Sbjct: 451 RQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKM 493
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 73/276 (26%)
Query: 44 LVSL-EKCSTMRELKQIHAQMLRTSL---------FFDPCAD-------YHVRLVFSQIS 86
L+SL KC+T++ELKQI A ++T+ F + C H +F QI+
Sbjct: 29 LISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQIT 88
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE----- 141
P I N++ RGY N D + F+ C + +
Sbjct: 89 QPNIVLFNTMARGYARLN-------------------DPLRMITHFRRCLRLVSKVKALA 129
Query: 142 --KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------------- 174
KQLH A+K G++ + ++ TLINMY++C +D
Sbjct: 130 EGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLA 189
Query: 175 ---QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
+ +EA+ +F ++ +KP VT++ VL++ A L + +H+ V + GF +V+
Sbjct: 190 RNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVK 249
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+ TTL+D Y KC + A ++F M P + W+
Sbjct: 250 VNTTLIDMYAKCGSLDDAVNVFRDM--PKRDTQAWS 283
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 47/255 (18%)
Query: 55 ELKQIHAQMLRT------------SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
+ KQ+HAQ +RT S++ + + LVF + +P + S++R +T+
Sbjct: 23 QAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTD 82
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
++L A + EM G PD +FPS+ KSC D+ + +H ++ G+ D +
Sbjct: 83 QSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142
Query: 160 HNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENV 191
N L+NMYS +D ++A+++ M ++
Sbjct: 143 GNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDL 202
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
KP+A TL +VL + D+ K +H V G S V + ++L+D Y K + +
Sbjct: 203 KPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSER 262
Query: 252 LFVKML----FPWNN 262
+F + WN+
Sbjct: 263 VFSHLYRRDSISWNS 277
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF + + + N+++ GY ++ +A EM L PD F S +F
Sbjct: 159 VRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSE 218
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------- 177
D+ K++H I+ G+ SD ++ ++L++MY+ ++ +
Sbjct: 219 YVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSL 278
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+++F +M V+P AV +V+ A A L K++H V GF
Sbjct: 279 VAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 338
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ + + L+D Y KC + A +F +M
Sbjct: 339 GRNIFIASALVDMYSKCGNIQAARKIFDRM 368
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 35/220 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF +I + + + S++ G + L +++M + P + ++ +C+
Sbjct: 219 ARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSA 278
Query: 138 IYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
++ Q +H IK GL S+SF+ L++MY C LD
Sbjct: 279 LFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTM 338
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
P +A+++F N+ PN+VT VL+A A+ RDL K +H + G
Sbjct: 339 IVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGL 398
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ + L+D Y KC+ VS A +F ++ + WN+
Sbjct: 399 VEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNS 438
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 115/271 (42%), Gaps = 38/271 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H R VF ++S + +++ GYT +A + + + P+ ++ + A
Sbjct: 319 HARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASA 378
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
D+ + K +H A+K GL + + N L++MY+ C + + D
Sbjct: 379 QLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNS 438
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+ +F +M ++ P+A+++VN L+A DL K +H +
Sbjct: 439 MISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHA 498
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAH 285
F S++ + T L++ Y KC + A +F +M N+ A +G G+ G + +
Sbjct: 499 FVSNIYVDTALLNLYNKCGDLLSARRVFDEM----NDRNSVTWCAMIGGYGMQGDSAGSI 554
Query: 286 QISGPCPKKA---HKLFFFSMLKKVHVPGVL 313
+ G K + + F S+L G++
Sbjct: 555 HLFGEMLKDGVYPNDIAFTSILSTCSHSGMV 585
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 51/277 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQML-------------RTSLF--FDPCADY 76
N+ A L L C T+ L+ +HA++L RT L + D
Sbjct: 54 GNLARALSAGDLLRLLPSCGTLLSLRVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDL 113
Query: 77 -HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP---DRFMFPSLF 132
R+VF P Y+ +++ H +A +H+M + P D F+
Sbjct: 114 ASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLAL 173
Query: 133 KSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------QPD---- 177
K+C A+ + LH AIK G +D F+ N+L++MY+ L+ PD
Sbjct: 174 KACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVV 232
Query: 178 ----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ + +F +M +NV P+ T+ V+TA + L + +H V
Sbjct: 233 SWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSV 292
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ G S+ + L+D Y KC + A +F ++ +
Sbjct: 293 IKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSY 329
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 36/203 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F +ISN + NS++ GY N+ +A + + +M +QG PD + + D
Sbjct: 424 IFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGD 483
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
+ + K +H A+K S+ ++ L+N+Y+ C WC
Sbjct: 484 LLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGG 543
Query: 174 --DQPDEA--IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q D A I +F M + V PN + ++L+ + + + KR + + H
Sbjct: 544 YGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQ-----H 598
Query: 230 VELKTTLMDAYCKCKFVSRAWDL 252
+ ++ C ++RA +L
Sbjct: 599 FNITPSMKHYACMVDVLARAGNL 621
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSL-----FFDPCADYHV--------RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH +LR + F + D++ R +F +++ + + +++ GY
Sbjct: 162 KQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGYMQN 221
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLH 160
+ EA + EM G PD F+ S+ SC + + +Q+H+ +IK + SD FL
Sbjct: 222 SFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQ 281
Query: 161 NTLINMYSSCW----------------------------CLDQPDEAIKIFYRMEIENVK 192
N LI+MY+ C L+Q EA+ +F M +
Sbjct: 282 NGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMRHGMLS 341
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ +T V++L A A L K++H + + G + + L+D Y KC + A +
Sbjct: 342 PSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLV 401
Query: 253 FVKM----LFPWN 261
F KM + WN
Sbjct: 402 FDKMTEKDIVVWN 414
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 47/258 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQIS 86
C L C ++ L +Q+HA ++ ++ + C + R VF ++
Sbjct: 246 CTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMT 305
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + N+++ GY+ EA + EM L P F SL + A + + KQ
Sbjct: 306 IRNVVSYNALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGASATLSALELGKQ 365
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+H+ KFG++ + F + LI+ YS C CL +
Sbjct: 366 IHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQLE 425
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+K++ ++I KPN VT + TA + L+ ++ H + ++G SH +
Sbjct: 426 NEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNS 485
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D Y KC + A F
Sbjct: 486 LIDMYAKCGSLEDARKAF 503
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 57 KQIHAQMLRTSL------------FFDPCA-DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHA + + + F+ C+ RLVF +++ I N+++ GYT +
Sbjct: 364 KQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQ 423
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ EA Y E+ + P+ F +L + +++ +Q H+ IK GL S F
Sbjct: 424 LENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTT 483
Query: 161 NTLINMYSSCWCLDQPDEA-------IKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
N+LI+MY+ C L+ +A + F M ++KP V++ R+ L
Sbjct: 484 NSLIDMYAKCGSLEDARKAFGHVKDGLHYFESMPKFSIKPGTEHYACVVSLLGRSGKLYE 543
Query: 214 VKR 216
K
Sbjct: 544 AKE 546
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 41/243 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVF + + T +I+ + + + +M ++PD ++ S+ +C+
Sbjct: 94 EARLVFDGLLEKSAVTWTTIITACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACS 153
Query: 137 DI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ +V+ KQ+H ++ G+ D N LI+ Y+ +
Sbjct: 154 QLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTA 213
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+K+F M +P+ ++LT+ L ++VH +
Sbjct: 214 MIAGYMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGN 273
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAH 285
S + L+ L+D Y KC ++ A +F M + V L+ +ST
Sbjct: 274 VESDIFLQNGLIDMYAKCGSLNDARKVFDDM----------TIRNVVSYNALIEGYSTLE 323
Query: 286 QIS 288
Q+S
Sbjct: 324 QLS 326
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCADI--YVEKQLHSQAIK 150
+S+V Y+ + EA L + + P+ ++ S+ +C + ++KQ+H A+K
Sbjct: 10 SSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGGSIDKQMHGFAVK 69
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G + ++ +L+++Y+ +D+ + ++++
Sbjct: 70 SGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVKRGRSEVSLQL 129
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M NV P+ L +VL A ++ ++ K++H V G V L+D Y K
Sbjct: 130 FSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTK 189
Query: 243 CKFVSRAWDLFVKM 256
V A LF M
Sbjct: 190 SGKVQSARKLFDGM 203
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 59/292 (20%)
Query: 47 LEKCSTMRELKQIHAQMLR------TSLFFDPCA---------DYHVRLVFSQISNPTIY 91
L C+ + +LKQIHAQ +R +SLF DY R VF+QI NP +
Sbjct: 32 LTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYACR-VFNQIDNPNSF 90
Query: 92 TCNSIVRGYTNKNL--HHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYV---EKQLH 145
N+++ G ++L +A ++ M+ +G + PD+ FP L K+CA ++ +Q H
Sbjct: 91 MWNTLI-GACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAH 149
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+Q K GL D ++ N+LI++Y+SC CL +
Sbjct: 150 AQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFE 209
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV---DESGFWSHVELKT 234
A+K+F M+ + +P+ T+ ++++A A L H V V + +
Sbjct: 210 NALKLFVEMQ-NSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINS 268
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+L+D Y KC + A +F M P ++ W ++ + + GR A Q
Sbjct: 269 SLVDMYSKCGSLRMAQQVFETM--PKHDLNSW--NSMILALAMHGRGQAALQ 316
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 54/256 (21%)
Query: 52 TMRELKQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPTIYTCNSIVR 98
+ E +Q HAQ+ + L D C + L VF ++ ++ + N ++
Sbjct: 141 ALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMID 200
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIK---FG 152
Y L A + EM PD + S+ +CA I + H+ ++
Sbjct: 201 AYVQSGLFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGA 259
Query: 153 LASDSFLHNTLINMYSSCWCLDQPDE----------------------------AIKIFY 184
+A D ++++L++MYS C L + A++ F
Sbjct: 260 MAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFS 319
Query: 185 RM-EIENVKPNAVTLVNVLTA---RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
R+ E+E PN+VT V VL+A D R K V++ +E L+D
Sbjct: 320 RLVEMEKFLPNSVTFVGVLSACNHGGMVADGR--KYFDMMVNDYKIEPRLEHYGCLVDLL 377
Query: 241 CKCKFVSRAWDLFVKM 256
+ F+ A +L M
Sbjct: 378 SRSGFIDEALELVANM 393
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI----YTCNSIVRGYTNKN 104
KC + E ++IH++ FF ++ N + + NSI+ GY K
Sbjct: 487 KCGMIEEAEKIHSR------FFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKE 540
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHN 161
+A + + M+ G+ PD+F + ++ +CA++ + KQ+H+Q IK L SD ++ +
Sbjct: 541 QSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISS 600
Query: 162 TLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKP 193
TL++MYS C L + +EAI++F RM +EN+KP
Sbjct: 601 TLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKP 660
Query: 194 NAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N VT +++L A A + + ++ + + G + + ++D K V RA +L
Sbjct: 661 NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALEL 720
Query: 253 FVKMLFPWNN 262
+M F ++
Sbjct: 721 IREMPFEADD 730
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 48/250 (19%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C+ + EL+ Q+HA L++ D C + +++F + N
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNR 305
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+++ GY+ + +A L +H ++ GL D +F++CA + Q++
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDL 365
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
AIK L+ D + N I+MY C L + E
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 425
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F M ++P+ T +VL A L +H + +SG S+ + +L+D
Sbjct: 426 LFLFVSMLRSRIEPDEFTFGSVLKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 484
Query: 240 YCKCKFVSRA 249
Y KC + A
Sbjct: 485 YSKCGMIEEA 494
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 67/276 (24%)
Query: 53 MRELKQIHAQMLRTSLFFDPC-ADYHVRL------------VFSQISNPTIYTCNSIVRG 99
+ E QI+ +++SL D C A+ + + VF ++ + N+I+
Sbjct: 356 LSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAA 415
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQAIKFGLASDS 157
+ +E + M+ + PD F F S+ K+C + ++HS +K G+AS+S
Sbjct: 416 HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNS 475
Query: 158 FLHNTLINMYSSCWCL-------------------------------------------- 173
+ +LI+MYS C +
Sbjct: 476 SVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISG 535
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+Q ++A +F RM + P+ T VL A K++H V + S
Sbjct: 536 YVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSD 595
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
V + +TL+D Y KC + + +F K L WN
Sbjct: 596 VYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWN 631
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 40/226 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNL-------HHEAFLFYHEMIVQGLIPDRFMFPSL 131
+LVF I NP T + + KN +A + EM V G PD ++
Sbjct: 58 KLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTV 117
Query: 132 FKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA--------- 179
SCA D+ K++H + ++ G A D F+ + L++MY C CL+ E
Sbjct: 118 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 177
Query: 180 -------------------IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
I++F RM+ E ++P TL ++L A +R+ +L+ K +H
Sbjct: 178 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 237
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + + + + ++L+D Y KC + A ++F M P N W
Sbjct: 238 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM--PKTNVVSW 281
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 47/225 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTI 90
+ C+ + +L K+IH +++R+ D C + + VF QI +
Sbjct: 118 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 177
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ NS++ GY+ K + M +G+ P S+ +C+ ++ + K +H
Sbjct: 178 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 237
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
I+ + +D F++++LI++Y C + + EA
Sbjct: 238 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEA 297
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ IF M VKP+A+T +VL A ++ L K +H + ES
Sbjct: 298 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 342
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + + + N ++ GY + EA + + +M G+ PD F S+ +C+ + V
Sbjct: 269 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 328
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
K++H+ I+ L + L F +M+ + KP+ VT
Sbjct: 329 LEKGKEIHNFIIESKLEINEVL-----------------------FEKMQQSDAKPDKVT 365
Query: 198 LVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ +L+A + A + ++ + E GF VE + L+D + + A+++
Sbjct: 366 FLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEIL 422
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 24/153 (15%)
Query: 53 MRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTIYTCNSI 96
M++LKQ+HAQM++T+ DP A DY R +F + P ++ N++
Sbjct: 1 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDY-ARKIFRSMHRPNCFSYNTL 59
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFG 152
+R + N +A L + EM+ + P+ F FPS+FK+C + +Q+H A+KFG
Sbjct: 60 IRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFG 119
Query: 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
L SD F+ + ++ MY SC + ++A ++FYR
Sbjct: 120 LDSDEFVVSNVVRMYLSCGVM---EDAHRLFYR 149
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M++ V PN VTLV+VL A +R L K VH + L + L+
Sbjct: 219 EAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALI 278
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
D Y KC + +A +F + P N W+
Sbjct: 279 DMYAKCGSIEKALQVFEGL--PKRNVVTWS 306
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 52/272 (19%)
Query: 43 CLVSLEKCSTMREL--KQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISN 87
CL + S + EL K IH +++ +L+F +LVF I N
Sbjct: 199 CLARVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIEN 258
Query: 88 PTIYTC-NSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCAD---IYVEK 142
P T N ++ T + E +H ++ L PD F +PS+ K+C+ + K
Sbjct: 259 PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 318
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------------- 174
+H+ IK G A D + ++ + MY+ C +
Sbjct: 319 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 378
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
QP++A+++F M++ KP++VTL V+++ AR DL K +H + SGF + +
Sbjct: 379 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 438
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L+D Y KC + A ++F ++ + WN+
Sbjct: 439 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 470
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 50/278 (17%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYH--------VRLVFSQISNPTI 90
+ C+ + +L K+IH +++R+ D D + + VF QI +
Sbjct: 406 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 465
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ NS++ GY+ K + M +G+ P S+ +C+ ++ + K +H
Sbjct: 466 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 525
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
I+ + +D F++++LI++Y C + + EA
Sbjct: 526 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEA 585
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ IF M VKP+A+T +VL A ++ L K +H + ES + + L+D
Sbjct: 586 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDM 645
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
Y KC V A +F ++ P ++ W +M A G G
Sbjct: 646 YAKCGAVDEALHIFNQL--PERDFVSWTSMIAAYGSHG 681
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + + + N ++ GY + EA + + +M G+ PD F S+ +C+ + V
Sbjct: 557 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 616
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
K++H+ I+ L + + L++MY+ C +D
Sbjct: 617 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 676
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWS 228
Q EA+K+F +M+ + KP+ VT + +L+A + A + ++ + E GF
Sbjct: 677 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 736
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
VE + L+D + + A+++
Sbjct: 737 AVEHYSCLIDLLGRVGRLREAYEIL 761
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R+ F +I P + + NSIV Y+ + L EA + + EM GL PD L +C
Sbjct: 291 ARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVG 350
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-----------DQ-------- 175
+Y + +HS +K GL D + N+L++MY+ C L DQ
Sbjct: 351 RDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSI 410
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
P+E +K+F + + ++L NVL+A A VK+VH ++G
Sbjct: 411 LTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGL 470
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
L TL+D Y KC + A LF M +F W++
Sbjct: 471 VDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSS 511
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI 138
++F +I + + + SI+ G+ + EA + EMIV+G P+ F F S F++C +
Sbjct: 191 MLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAV 250
Query: 139 ----YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------- 177
Y E Q+H +IK+ L D ++ +L +MY+ C LD PD
Sbjct: 251 GSWEYGE-QIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSI 309
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+ +F M ++P+ +T+ +L A L + +H + + G
Sbjct: 310 VNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGL 369
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + +L+ Y +C +S A D+F ++ + WN+
Sbjct: 370 DGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 409
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 33/172 (19%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C+D + VF +I + + T NSI+ N E + + DR
Sbjct: 382 MYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRIS 441
Query: 128 FPSLFKSCADI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------- 175
++ + A++ Y E KQ+H+ A K GL D L NTLI+ Y+ C LD
Sbjct: 442 LNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMG 501
Query: 176 --------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
EA +F RM ++PN VT + VLTA +R
Sbjct: 502 NNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSR 553
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 97/262 (37%), Gaps = 50/262 (19%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTS-------LFFDPCADYHVRLVFSQISNPTIYTCNSI 96
+ CS +R L Q +H ++ +S L + H+ ++ + NP + S+
Sbjct: 51 VSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGR--NPVSWA--SV 106
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGL 153
+ + +A + M+ G D+F S ++C D+ +Q+H+ A+K
Sbjct: 107 IAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSER 166
Query: 154 ASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYR 185
SD + N L+ MYS +D EA+++F
Sbjct: 167 GSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRE 226
Query: 186 MEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M +E PN + A +++H + + + +L D Y +CK
Sbjct: 227 MIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCK 286
Query: 245 FVSRAWDLFVKMLFP----WNN 262
+ A F ++ P WN+
Sbjct: 287 NLDSARVAFYRIEAPDLVSWNS 308
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R+ F +I P + + NSIV Y+ + L EA + + EM GL PD L +C
Sbjct: 308 ARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVG 367
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-----------DQ-------- 175
+Y + +HS +K GL D + N+L++MY+ C L DQ
Sbjct: 368 RDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSI 427
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
P+E +K+F + + ++L NVL+A A VK+VH ++G
Sbjct: 428 LTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGL 487
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
L TL+D Y KC + A LF M +F W++
Sbjct: 488 VDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSS 528
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 38/220 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI 138
++F +I + + + SI+ G+ + EA + +MIV+G P+ F F S F++C +
Sbjct: 208 MLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAV 267
Query: 139 ----YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------- 177
Y E Q+H +IK+ L D ++ +L +MY+ LD PD
Sbjct: 268 GSWEYGE-QIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSI 326
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+ +F M ++P+ +T+ +L A L + +H + + G
Sbjct: 327 VNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGL 386
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + +L+ Y +C +S A D+F ++ + WN+
Sbjct: 387 DGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 426
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 33/168 (19%)
Query: 73 CADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C+D + VF +I + + T NSI+ N E + + DR ++
Sbjct: 403 CSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 462
Query: 132 FKSCADI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------- 175
+ A++ Y E KQ+H+ A K GL D L NTLI+ Y+ C LD
Sbjct: 463 LSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRD 522
Query: 176 ----------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
EA+ +F RM ++PN VT + VLTA +R
Sbjct: 523 VFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSR 570
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF ++ + S++ + +A + M+ G D+F S ++C
Sbjct: 105 ARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTE 164
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
D+ +Q+H+ A+K SD + N L+ MYS + D+ +F R++ +++
Sbjct: 165 LGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV---DDGFMLFERIKDKDL 218
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 34/230 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+ +F ++ + +Y+ N ++ GY + EAF + +M+ G+ PD++ F + +CAD
Sbjct: 159 KQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADA 218
Query: 139 Y-VEK--QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
V+K +L S + G +D F+ LINM+ C +D
Sbjct: 219 KNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMI 278
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q +A +F ME E V+P+ V V++L A L KRVH + E G
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
+ + + T L+ Y KC + A ++F L N W AM A G
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVF--NLVKGRNVVSWTAMIAGFAQHG 386
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 109/276 (39%), Gaps = 46/276 (16%)
Query: 51 STMRELKQIHAQML----------RTSLF--FDPCADY-HVRLVFSQISNPTIYTCNSIV 97
S +++ +QIH +++ RT+L + C R VF +IS + N+++
Sbjct: 421 SALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMI 480
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
Y + A + ++ +G+ PD F S+ C + + K + S I+ G
Sbjct: 481 TAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540
Query: 155 SDSFLHNTLINMYSSCWCL--------DQPDE--------------------AIKIFYRM 186
SD + N L++M+ +C L D P+ A F M
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMM 600
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ VKP+ +T +L A A L +R+H + E+ V + T L+ Y KC +
Sbjct: 601 QESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSI 660
Query: 247 SRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHS 282
A +F + P N W T Q G+ +
Sbjct: 661 DDAHLVFHNL--PKKNVYSWTSMITGYAQHGRGKEA 694
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF+ + + T S++ G +A + M +G+ PD+ F SL K+C
Sbjct: 262 VFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEA 321
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ K++H++ + GL ++ ++ L++MY+ C ++
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+EA F +M ++PN VT +++L A +R L+ +++H + ++G+ +
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++T L+ Y KC + A ++F ++ + WN
Sbjct: 442 DRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWN 477
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 59 IHAQMLRTSLFFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
+H + S+F + C D + +F+ + + + N+I+ G+ + AF ++ M
Sbjct: 543 LHIRNALVSMFVN-CGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQ 601
Query: 118 VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
G+ PD+ F L +CA + ++LH+ + L D + LI+MY+ C +D
Sbjct: 602 ESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSID 661
Query: 175 ----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
+ EA+++F +M+ E VKP+ +T V L+A A
Sbjct: 662 DAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACA 721
Query: 207 RA 208
A
Sbjct: 722 HA 723
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 52/261 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL------------------FFDPCA-DYHVRLVFSQISN 87
L C T+R +KQIHAQ+LR+ + P A DY + L FS I N
Sbjct: 19 LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSL-FSHIPN 77
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQL 144
P N ++R ++ Y + G DRF FP L K+ + + + ++
Sbjct: 78 PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137
Query: 145 HSQAIKFG-LASDSFLHNTLINMYSSC-------WCLDQP-------------------- 176
H A KFG +D F+ + LI MY++C + D+
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAH 197
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
D +K++ M+ +P+A+ L VL+A A A +L K +H+ + ++GF ++T+
Sbjct: 198 YDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS 257
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L++ Y C + A +++ ++
Sbjct: 258 LVNMYANCGAMHLAREVYDQL 278
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + ++++ GY EA ++EM + ++PD+ S+ +CA+
Sbjct: 302 ARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACAN 361
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ K +H+ A K G ++N LI+MY+ C L
Sbjct: 362 VGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 421
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR-VHKCVDESG 225
D AI +F+RM+ +N++PN VT + VL A + A + ++ ++E
Sbjct: 422 INAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHR 481
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
E ++D YC+ + +A +L M FP N
Sbjct: 482 ISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPN 517
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 66/253 (26%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL-FYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F ++S+ + T N ++ GY+ +N H++ L Y EM G PD + ++ +CA
Sbjct: 170 ARFLFDKMSHRDVVTWNIMIDGYS-QNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACA 228
Query: 137 --------------------------------------------DIY---------VEKQ 143
++Y V
Sbjct: 229 HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTA 288
Query: 144 LHSQAIKFGLASDS-FLHNTLINMYSSCWCLD--------QPDEAIKIFYRMEIENVKPN 194
+ S K G+ D+ F+ + ++ CW QP EA+++F M+ + P+
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPD 348
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
+T+++V++A A L K +H D++GF + + L+D Y KC + +A ++F
Sbjct: 349 QITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFE 408
Query: 255 KMLFPWNNYGQWA 267
M P N W+
Sbjct: 409 NM--PRKNVISWS 419
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R+ F +I P + + NSIV Y+ + L EA + + EM GL PD L +C
Sbjct: 308 ARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVG 367
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-----------DQ-------- 175
+Y + +HS +K GL D + N+L++MY+ C L DQ
Sbjct: 368 RDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSI 427
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
P+E +K+F + + ++L NVL+A A VK+VH ++G
Sbjct: 428 LTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGL 487
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
L TL+D Y KC + A LF M +F W++
Sbjct: 488 VDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSS 528
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI 138
++F +I + + + SI+ G+ + EA + EMIV+G P+ F F S F++C +
Sbjct: 208 MLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAV 267
Query: 139 ----YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------- 177
Y E Q+H +IK+ L D ++ +L +MY+ C LD PD
Sbjct: 268 GSWEYGE-QIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSI 326
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+ +F M ++P+ +T+ +L A L + +H + + G
Sbjct: 327 VNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGL 386
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + +L+ Y +C +S A D+F ++ + WN+
Sbjct: 387 DGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 426
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 73 CADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C+D + VF +I + + T NSI+ N E + + DR ++
Sbjct: 403 CSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 462
Query: 132 FKSCADI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------- 175
+ A++ Y E KQ+H+ A K GL D L NTLI+ Y+ C LD
Sbjct: 463 LSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRD 522
Query: 176 ----------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
EA +F RM ++PN VT + VLTA +R
Sbjct: 523 VFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSR 570
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 36/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF ++ + S++ + +A + M+ G D+F S ++C
Sbjct: 105 ARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTE 164
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------- 175
D+ +Q+H+ A+K SD + N L+ MYS +D
Sbjct: 165 LGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSI 224
Query: 176 ---------PDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+++F M +E PN + A +++H +
Sbjct: 225 IAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR 284
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
+ + +L D Y +CK + A F ++ P WN+
Sbjct: 285 LDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNS 325
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 58/273 (21%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLF------------FDPCADYHVRL-VFSQISNPTIYTC 93
L +CS++ ++KQIHAQ+L+ +L F C + + VF+QI +P +
Sbjct: 24 LHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLY 83
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+++R + + AF + EM G+ D F +P L K+C+ + V + +H+Q K
Sbjct: 84 NTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEK 143
Query: 151 FGLASDSFLHNTLINMY--------------------SSCW--CLD------QPDEAIKI 182
G D F+ N+LI+ Y + W LD + + A ++
Sbjct: 144 MGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFEL 203
Query: 183 FYRMEIENV----------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
F +M NV K + T++++L+A A + L KRVH ++ + F +
Sbjct: 204 FEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPV 263
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+D Y KC + A +F M + WN
Sbjct: 264 SNALIDMYAKCGSLENALSIFHGMVRKDVVSWN 296
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 50/283 (17%)
Query: 29 INNNNINSQYQAHFCLVS-----LEKCSTMRELKQIHAQMLRTSL---------FFDPCA 74
++N N +Q + H L +++C + LKQIHAQML S+ D
Sbjct: 17 LSNLNFQTQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLKD 76
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGY-TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
+ LVF+Q++ P IY N ++RG T + Y+++ GL + F +P LF
Sbjct: 77 LAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFI 136
Query: 134 SCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQ-------- 175
+C ++ K H K GL D +++++LI MY+ C D+
Sbjct: 137 ACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVS 196
Query: 176 -------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EAI +F M E +P+ +TLV+VL A DL + V V
Sbjct: 197 WNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVL 256
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
E + + + L+D Y KC + A +F M + WN
Sbjct: 257 EKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWN 299
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 35/223 (15%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R VF + N + T N+I+ GY +EA + ++ M G PDR
Sbjct: 273 MYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVT 332
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
+ +C+ I + K + + A + GL D ++ + LI+MY+ C LD
Sbjct: 333 MIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMP 392
Query: 175 ------------------QPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTV 214
Q EA+ +F RM +N V+PN +T + VL+A A +
Sbjct: 393 HKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEG 452
Query: 215 KRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+++ + ++ S G VE + ++D + + AWDL KM
Sbjct: 453 RQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKM 495
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ + + + NS++ GY+ EA + EM +G PD S+ +C D
Sbjct: 182 ARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGD 241
Query: 138 IY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ + + + ++ + +S++ + LI+MY C L
Sbjct: 242 LGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAI 301
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EAI +F M P+ VT++ VL+A + L K V E G
Sbjct: 302 ITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGL 361
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V + + L+D Y KC + A +F M P N W
Sbjct: 362 QHDVYVASALIDMYAKCGSLDDAVRVFESM--PHKNEVSW 399
>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 720
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 52/275 (18%)
Query: 56 LKQIHAQMLRT--------SLFFDP---CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
+K I AQML++ S D C + + R +F + I T NSI+ Y
Sbjct: 66 IKNIQAQMLKSGFPVELSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKH 125
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQAIKFGL-ASDSFL 159
EA Y MI ++PD + S+FK+ +D+ +EK+ H A+ GL S+ F+
Sbjct: 126 RRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFV 185
Query: 160 HNTLINMY-------SSCWCLDQPDE---------------------AIKIFYRMEIENV 191
+ L++MY + LD+ +E A+K F M +E V
Sbjct: 186 GSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKV 245
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
+PN T +VL + +D+ K +H + +SGF S + +T+L+ Y +C V +
Sbjct: 246 QPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLL 305
Query: 252 LFVKMLFPWNNYGQWAMSATVGPQGLV--GRHSTA 284
+F + +P N W T GLV GR TA
Sbjct: 306 VFKCIKYP--NQVTW----TSLISGLVQNGREETA 334
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 31/198 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+LV ++ + +++ GY+ K EA + M+V+ + P+ + + S+ SC
Sbjct: 201 EAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCG 260
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
DI K +H +K G S +L+ MY C +D
Sbjct: 261 NLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTS 320
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ + A+ F +M ++VKPN+ TL + L + ++VH V + G
Sbjct: 321 LISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYG 380
Query: 226 FWSHVELKTTLMDAYCKC 243
F + L++ Y KC
Sbjct: 381 FDRDKYAGSGLIELYGKC 398
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 42/211 (19%)
Query: 25 NLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQ 84
NL +I N + H +V S + + LR SL D LVF
Sbjct: 261 NLKDIGNGKL-----IHGLMVKSGFESALASQTSLLTMYLRCSLVDDSL------LVFKC 309
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---E 141
I P T S++ G A + + +M+ + P+ F S + C+++ +
Sbjct: 310 IKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEG 369
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+Q+H K+G D + + LI +Y C C D
Sbjct: 370 RQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQN 429
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM ++PN VT+++VL A
Sbjct: 430 GFGREALELFERMINLGLQPNDVTVLSVLLA 460
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 31/212 (14%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+H VF+++ +++ N +V GY EA YH M+ G PD + FP + +SC
Sbjct: 146 WHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSC 205
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------ 174
D+ + +++H+ ++FGL + + N L+ MY+ C ++
Sbjct: 206 GGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWN 265
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ + +++F M + V+PN +T+ +V A DL K +H +
Sbjct: 266 AMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKR 325
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF + V +L+ Y + A +F +M
Sbjct: 326 GFATDVAFCNSLIQMYSSLGRMGEACTVFSRM 357
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 49/258 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L C + +L +++HA +LR L + C D R VF +S
Sbjct: 202 LRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDC 261
Query: 91 YTCNSIVRG-YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ N+++ G + N LF H M+ + P+ S+ + D+ K++H+
Sbjct: 262 ISWNAMIAGHFENHECEAGLELFLH-MLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHA 320
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDE 178
A+K G A+D N+LI MYSS + + PD+
Sbjct: 321 LAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDK 380
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A++++ ME+ NV P+ VT+ + L A A L ++H+ GF ++ + L++
Sbjct: 381 ALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVE 440
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y K K + +A ++F M
Sbjct: 441 MYAKSKIIEKAIEVFKYM 458
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 79/215 (36%), Gaps = 34/215 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VFS++ + +++ GY +A Y M V + PD S +C
Sbjct: 353 VFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGR 412
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI--------------- 182
+ V +LH A G + N L+ MY+ +++ E K
Sbjct: 413 LDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAG 472
Query: 183 ------------FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
++R + +VKPN+VT + L A A LR K +H V G S
Sbjct: 473 FCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEG 532
Query: 231 ELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ L+D Y KC AW F K + WN
Sbjct: 533 YVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWN 567
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 19/146 (13%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA----------DYHVRLV------FSQISNPTIY 91
E +++ EL Q HA +L++ L A + H + + FS+I NP Y
Sbjct: 15 EMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSY 74
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQA 148
N+I+R Y N A +H+M+ ++PD++ F KSC + +Q+H
Sbjct: 75 MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHV 134
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD 174
+K GL D F+ NTLI++Y+SC C++
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIE 160
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + + + N+++ GY++ E + + +M G+ PD S+ +CA +
Sbjct: 225 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 284
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------- 178
Q +H+ K G++ D F+ L++MYS C +++ E
Sbjct: 285 GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSII 344
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGF 226
A++IF M +E KPN VT V VL+A +RA L + + V G
Sbjct: 345 SGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGI 404
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E ++D + + A +L KM
Sbjct: 405 QPTIEHYGCMVDLLGRVGLLEEAEELVQKM 434
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 33/247 (13%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVF 82
+Y F L S S + E +QIH +L+T L D C + R +
Sbjct: 108 KYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIE-DARHLL 166
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK 142
++ + + N+++ Y + L A + EM + + FM YV
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISG--------YVGV 218
Query: 143 QLHSQAIK-FGLA--SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
L +A + FG + N +I YS + E + +F M+ VKP+ TLV
Sbjct: 219 GLLEEARRVFGETPVKNVVSWNAMITGYSHA---GRFSEVLVLFEDMQHAGVKPDNCTLV 275
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VK 255
+VL+A A L + VH +D++G + T L+D Y KC + +A ++F K
Sbjct: 276 SVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRK 335
Query: 256 MLFPWNN 262
+ WN+
Sbjct: 336 DISTWNS 342
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA-------SDSFLHNTLINMYS 168
++ GLI F L S V H+QAI + + +S++ NT+I Y+
Sbjct: 30 ILKSGLIHSTFAASRLIAS-----VSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84
Query: 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ P+ A+ IF++M +V P+ T L + + +++H V ++G
Sbjct: 85 NS---PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGD 141
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ ++ TL+ Y C + A L +ML WN
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWN 178
>gi|297735091|emb|CBI17453.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 20/150 (13%)
Query: 44 LVS-LEKCSTMRELKQIHA---------------QMLRTSLFFDPCADYHVRLVFSQISN 87
LVS L C+ + ++KQ+HA ++LRT D D + RLVF Q+
Sbjct: 42 LVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
P + +++RGY + E+ L Y+ M QG+ P F F +L K+C+ D+ + +Q+
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQV 161
Query: 145 HSQAIKF-GLASDSFLHNTLINMYSSCWCL 173
H+Q I G SD ++ NTLI+MY C CL
Sbjct: 162 HTQTILIGGFGSDLYVGNTLIDMYVKCGCL 191
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 35/221 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F I P TC++++ T L +EA Y + +G+ PD +F + K+CA
Sbjct: 30 RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA 89
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------ 175
D K++H A + G+ SD F+ N LI+ Y C C++
Sbjct: 90 VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTS 149
Query: 176 ----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
P + + +F M VKPN +T+ ++L A A +DL++ K +H G
Sbjct: 150 LSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 209
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
++ + + L+ Y KC V A +F M + WN
Sbjct: 210 MVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNG 250
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 55/235 (23%)
Query: 47 LEKCSTMRELK---QIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L C+ +++LK +IH +R SL+ + R+VF + + +
Sbjct: 186 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 245
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
+ N ++ Y + + F + +M G+ D + ++ C
Sbjct: 246 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC--------------- 290
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
+ N + +EA+++F +M+ KPN +T+ ++L A + + +
Sbjct: 291 --------MEN------------GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN 330
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
LR K +H V + T L+ Y KC ++ + ++F M + WN
Sbjct: 331 LRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 385
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 120/304 (39%), Gaps = 84/304 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL--------------FFDPCAD---YHVRLVFS 83
H L L C T++ L+ IHA+M++T L P D Y + VF
Sbjct: 3 HPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAIS-VFD 61
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA------- 136
I P + N++ RG+ + A Y MI GL+P+ + FP L K+CA
Sbjct: 62 SIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFRE 121
Query: 137 ---------------DIYVEKQLHSQAIKFGLASDS------------FLHNTLINMYSS 169
D+YV L + +K G D+ + LI Y+S
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181
Query: 170 CWCLDQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNV 201
+ EA+++F M NVKP+ T+V V
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKML 257
L+A A++ + ++VH +D+ GF S++++ L+D Y KC V A LF K +
Sbjct: 242 LSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV 301
Query: 258 FPWN 261
WN
Sbjct: 302 ISWN 305
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + EM+ + PD ++ +CA
Sbjct: 191 MFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSAS 250
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
I + +Q+HS G S+ + N LI++Y C ++
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGG 310
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +D+ G
Sbjct: 311 YTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVS 370
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ L+T+L+D Y KC + A +F ML
Sbjct: 371 NPSSLRTSLIDMYAKCGDIEAAQQVFDSML 400
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 45/182 (24%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F +S + + N+++ GYT+ NL+ EA L + EM+ G P+ S+ +CA
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGA 351
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------- 178
+Y++K+L G+++ S L +LI+MY+ C ++ +
Sbjct: 352 IDIGRWIHVYIDKRLK------GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405
Query: 179 -----------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
A IF RM + ++P+ +T V +L+A + + L + + + +
Sbjct: 406 SWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 465
Query: 222 DE 223
E
Sbjct: 466 TE 467
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 131/334 (39%), Gaps = 90/334 (26%)
Query: 3 APLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSL-EKCSTMRELKQIHA 61
APLP+ + P+ S PL+ ++ +I++ +H L L +C+TM L+Q+H
Sbjct: 4 APLPV--RGCPPSSSGTTPPLLP----SSPSISAFLASHPALTLLHTQCATMARLRQLHG 57
Query: 62 QMLRTSLFFDPCAD---------------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
++++ L DP A Y RLV P + N+ +R ++
Sbjct: 58 ALVKSGLAKDPIAASRVVAFLAGKGRDVAYAARLVRHH-PRPNAFMWNTAIRALSDGPGP 116
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ-------LHSQAIKFGLASDSFL 159
A + +M+ P+R FPSLF S A + V LH +K GLA D+++
Sbjct: 117 DAAVALFLDMLRSPTPPERRTFPSLFASYARLGVRADDDGAGAALHGMVLKLGLAGDAYV 176
Query: 160 HNTLINMYSSCWCLDQP-----------------------------DEAIKIFYRM---- 186
N++I MY+S D+ DEA ++F M
Sbjct: 177 RNSMIAMYASWGRADEALLLYGQCGQAFDVVACNSAIVALTRAGRVDEAREVFDAMPART 236
Query: 187 ---------------------------EIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+ V+PNA LV+VL A L VH
Sbjct: 237 VATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANVLVSVLGCCAALGALEQGAWVHA 296
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+D+ G + + T L+D YCKC + +A +F
Sbjct: 297 YIDKHGVAMNALVVTALVDMYCKCGSIHKARHVF 330
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 118/283 (41%), Gaps = 54/283 (19%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPT 89
+L CS+ L K+IHAQ++ + + C + F ++
Sbjct: 85 TLGACSSAEFLETGKKIHAQIVAGEVELELNLANSLISMYSNCGSLVDAKRFFDGMNRRN 144
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ + N I+ ++ + EA ++EM QG PDR F S+F +C+ D+ +++H+
Sbjct: 145 VVSWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFSACSILEDLSQGRRIHA 204
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------E 178
+ + D + NTL+NMY+ C LD +
Sbjct: 205 RFCDGRMKLDVSIGNTLLNMYARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHD 264
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT--TL 236
A ++F +M V PN VT + +L A A AR L+ + +H V SG +L L
Sbjct: 265 AYEVFQKM---GVAPNEVTFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGL 321
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
++ Y KC +S A +F M N W ++ + GL G
Sbjct: 322 INTYAKCGSLSDAKTVFESMATAERNVVTW--TSIIAACGLCG 362
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 31/233 (13%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLF--------------FDPCADY-HVRLVFSQISNP 88
L C+ R LKQ IH+ +L + + + C + VF ++
Sbjct: 285 LGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATA 344
Query: 89 --TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ--- 143
+ T SI+ EA +H M ++G+ + F ++ +CAD+ ++
Sbjct: 345 ERNVVTWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTREARY 404
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
LH + G D+ + N LINM+ C L ++A IF RM N+ VT +L
Sbjct: 405 LHGLIVSGGYDRDTVVCNGLINMFGKCGML---EDARAIFERMRSRNL----VTWTGMLG 457
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A + +++R + + ++ + V TT++ AY + + A L+ +M
Sbjct: 458 AYIQQQEIRQAVSLFQQMERISY-KDVMAWTTMVAAYAQAGYADEALKLYARM 509
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 35/152 (23%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+++HS+ + G+ S++ L NTL+ MY C L +
Sbjct: 1 RRIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSRH 60
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EAI++F+ M +V+PN VT +N L A + A L T K++H + + L
Sbjct: 61 RLSREAIELFHAM---DVRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLA 117
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+L+ Y C + A F M + WN
Sbjct: 118 NSLISMYSNCGSLVDAKRFFDGMNRRNVVSWN 149
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 92/242 (38%), Gaps = 32/242 (13%)
Query: 55 ELKQIHAQMLRTSLFFDPCAD--------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
EL+ I A + CAD Y L+ S + CN ++ + +
Sbjct: 375 ELEGIPANEITFGTVLSACADLGSTREARYLHGLIVSGGYDRDTVVCNGLINMFGKCGML 434
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA------SDSFLH 160
+A + M + L+ M + Y+++Q QA+ D
Sbjct: 435 EDARAIFERMRSRNLVTWTGMLGA--------YIQQQEIRQAVSLFQQMERISYKDVMAW 486
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
T++ Y+ DEA+K++ RM +E V P+ +T VN+L A +R + +
Sbjct: 487 TTMVAAYAQA---GYADEALKLYARMGLEGVAPDEITFVNLLHACSRMGAKKEGWTIRSH 543
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
+ E G S L L+ Y C W L KM+F N + +A G+ G+
Sbjct: 544 ILERGLPSSRVLGNGLVCFYGACG----TW-LQAKMVFE--NLAERDSAAWNAAIGVSGQ 596
Query: 281 HS 282
H
Sbjct: 597 HG 598
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 40/232 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
+VF I NP + N ++RG+ + Y +M+ +GL PD+F FP KSCA
Sbjct: 773 IVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLS 832
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
D+ K +H + G ++D F+ L++MY+ C ++
Sbjct: 833 DLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMIS 892
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
E + F M V PN V++++VL A LR + H V ++GF
Sbjct: 893 GYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF 952
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQG 276
+ + T +MD Y KC + A LF K L W+ AM A+ G G
Sbjct: 953 DILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWS-----AMIASYGIHG 999
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 49/268 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTIYTC 93
+ C+ R + Q+H+Q+ +T + D CA R VF + +P ++
Sbjct: 11 FQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLW 70
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAI 149
NS +R Y + E +H MI G PD F P K+CA + + K +H A
Sbjct: 71 NSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAK 130
Query: 150 KFG-LASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAI 180
K + SD F+ + L+ +YS C + + P+EA+
Sbjct: 131 KNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEAL 190
Query: 181 KIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+F +M + + V + VTLV+V++A A+ +++ VH V F + L +L++
Sbjct: 191 ALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNL 250
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
Y K A +LF KM P + W+
Sbjct: 251 YAKTGCEKIAANLFSKM--PEKDVISWS 276
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 41/241 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+FS++ + + ++++ Y N +EA +HEMI + P+ S ++CA +
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR------------ 185
+ K++H A+ G D + LI+MY C C PDEA+ +F R
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSC---PDEAVDLFQRLPKKDVVSWVAL 379
Query: 186 -------------------MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
M + ++P+AV +V +L A + + +H V SGF
Sbjct: 380 LSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGF 439
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
S+V + +L++ Y KC + A LF M+ + W S+ + G+ GR A +
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIV--RDVVIW--SSMIAAYGIHGRGGEALE 495
Query: 287 I 287
I
Sbjct: 496 I 496
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 49/261 (18%)
Query: 45 VSLEKCSTMRELK-------------QIHAQMLRTSLF---FDPCADYHVRL-VFSQISN 87
++L+ C+ +R L+ +I + M S + C L VF +
Sbjct: 108 IALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR 167
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYVEKQ--- 143
P S+V GY N EA + +M++ ++ D S+ +CA + K
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSC 227
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQ 175
+H I+ D L N+L+N+Y+ C +
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+ +F+ M + +PN+VT+V+ L A A +R+L K++HK GF + T
Sbjct: 288 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTA 347
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC A DLF ++
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRL 368
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 44/207 (21%)
Query: 42 FCLVSLEKCSTMRELKQIHAQML----RTSLFFDP--------CADYHV-RLVFSQISNP 88
F L S S ++ K IH ++ LF D C D RLVF +++
Sbjct: 823 FALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR 882
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LH 145
+ + S++ GY + + E F+ M G+IP+R S+ +C ++ ++ H
Sbjct: 883 DLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFH 942
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----DE----------------------- 178
S I+ G D + +++MYS C LD DE
Sbjct: 943 SYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGR 1002
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTA 204
AI +F +M V+P+ VT VL+A
Sbjct: 1003 KAIDLFDQMVKAGVRPSHVTFTCVLSA 1029
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNP 88
+L+ C+ R L K+IH + D C D V L F ++
Sbjct: 313 ALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDL-FQRLPKK 371
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LH 145
+ + +++ GY + +++ + M+ G+ PD + + +++ + +Q LH
Sbjct: 372 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH 431
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
++ G S+ F+ +LI +YS C L +A+K+F M + +V
Sbjct: 432 GYVVRSGFNSNVFVGASLIELYSKCGSL---GDAVKLFKGMIVRDV 474
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 47/260 (18%)
Query: 44 LVSLEKCST---MRELKQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISN 87
L+ L+ CS+ ++ K+ HAQ+++ S++ + R VF +
Sbjct: 166 LIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYK 225
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQL 144
+ T N ++ GY +AF ++ M +G P+R F S+ C+ + K +
Sbjct: 226 RDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAV 285
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------------------- 176
H+Q + GL D + LI MY C ++
Sbjct: 286 HAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNI 345
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++A +F M+ E ++P+ +T ++++ A A + DL + +H V +GF + + + T L
Sbjct: 346 EDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTAL 405
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
+ Y KC + A +F M
Sbjct: 406 VHMYAKCGAIKDARQVFDAM 425
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 31/211 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
R F + N T+ T N+I+ GY EAF + +M+ + + P F + +C
Sbjct: 114 EARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS 173
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
A + + K+ H+Q IK G SD + L++MY +D
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
++A ++FYRM+ E KPN ++ +++L + L K VH +G
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + T L+ Y C + A +F KM
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKM 324
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L+ CST L K +HAQ + T L D C R VF ++ +
Sbjct: 270 LDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDV 329
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ ++RGY + +AF + M +G+ PDR + + +CA D+ + +++HSQ
Sbjct: 330 VSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQ 389
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
++ G +D + L++MY+ C + +EA
Sbjct: 390 VVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEA 449
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F+ M+ NV+P+ VT +N+L A L ++ ++ SH+ + L++
Sbjct: 450 FETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINM 509
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
K + RA +F M + WN
Sbjct: 510 NVKHGSIERARYIFENMVQRDVVTWN 535
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 123/305 (40%), Gaps = 84/305 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA--------DYHVRLVFS 83
H L L C T++ L+ IHAQM++T L + C Y + VF
Sbjct: 34 HPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAIS-VFE 92
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA------- 136
I P + N++ RG+ + A Y MI GL+P+ + FP L KSCA
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKE 152
Query: 137 ---------------DIYVEKQLHSQAIKFGLASDS------------FLHNTLINMYSS 169
D++V L S ++ G D+ + LI Y+S
Sbjct: 153 GQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS 212
Query: 170 CWCLDQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNV 201
++ EA+++F M N++P+ T+V V
Sbjct: 213 RGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTV 272
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF--- 258
++A A++ + ++VH +D+ GF S++++ +LMD Y KC + A LF +L+
Sbjct: 273 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDV 332
Query: 259 -PWNN 262
WN
Sbjct: 333 ISWNT 337
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + EM+ + PD ++ +CA
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGS 281
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+HS G S+ + N+L+++YS C L+
Sbjct: 282 IELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGG 341
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M +PN VT++++L A A + + +H +D+
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSAT 401
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+T+L+D Y KC + A +F K L WN
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R+VF + + T S++ GY + + M +G+ P+ F F S+ + A
Sbjct: 155 RVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQ 214
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
+ + +++H+Q++KFG S F+ N+LINMYS C +++
Sbjct: 215 GAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLM 274
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+++F+ K + T V+ A + L +++H CV + GF
Sbjct: 275 AGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFH 334
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S + T +MDAY KC + A+++F+ M
Sbjct: 335 SDGNVMTAIMDAYSKCGELDDAFNIFLLM 363
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 37/213 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ VF Q+ + + N+++ G EA +H+ + + ++ K CA
Sbjct: 254 EAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCA 313
Query: 137 DI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W- 171
++ + +QLHS +K G SD + +++ YS C W
Sbjct: 314 NLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373
Query: 172 -----CLDQPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
C+ D A +F RM +NVKPN T VLTA + ++H + ++
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI----LLPQIHAQIIKT 429
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ + T L+ +Y K A +F KM+
Sbjct: 430 NYQHAPSVGTALLASYSKLGNTEEALSIF-KMI 461
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 46/178 (25%)
Query: 118 VQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCLDQP 176
V GLIPDR +QLH +K G ++ + L++MY C ++
Sbjct: 108 VCGLIPDRV-------------SGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDG 154
Query: 177 ----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+ + +F+RM E V PN T +VL+A A
Sbjct: 155 RVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQ 214
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ +RVH + G S V + +L++ Y KC V A +F +M + WN
Sbjct: 215 GAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNT 272
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI----YTCNSIVRGYTNKN 104
KC + E ++IH++ FF ++ N + + NSI+ GY K
Sbjct: 487 KCGMIEEAEKIHSR------FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKE 540
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHN 161
+A + + M+ G+ PD+F + ++ +CA++ + KQ+H+Q IK L SD ++ +
Sbjct: 541 QSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 600
Query: 162 TLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKP 193
TL++MYS C L + +EAI++F RM +EN+KP
Sbjct: 601 TLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKP 660
Query: 194 NAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N VT +++L A A + + ++ + + G + + ++D K V RA +L
Sbjct: 661 NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALEL 720
Query: 253 FVKMLFPWNN 262
+M F ++
Sbjct: 721 IREMPFEADD 730
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 48/250 (19%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C+ + EL+ Q+HA L++ D C + +++F N
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 305
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+++ GY+ + +A L +H ++ GL D +F++CA + Q++
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 365
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
AIK L+ D + N I+MY C L + E
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 425
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F M ++P+ T ++L A L +H + +SG S+ + +L+D
Sbjct: 426 LFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 484
Query: 240 YCKCKFVSRA 249
Y KC + A
Sbjct: 485 YSKCGMIEEA 494
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 67/276 (24%)
Query: 53 MRELKQIHAQMLRTSLFFDPC-ADYHVRL------------VFSQISNPTIYTCNSIVRG 99
+ E QI+ +++SL D C A+ + + VF ++ + N+I+
Sbjct: 356 LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAA 415
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQAIKFGLASDS 157
+ +E + M+ + PD F F S+ K+C + ++HS +K G+AS+S
Sbjct: 416 HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNS 475
Query: 158 FLHNTLINMYSSCWCL-------------------------------------------- 173
+ +LI+MYS C +
Sbjct: 476 SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISG 535
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+Q ++A +F RM + P+ T VL A K++H V + S
Sbjct: 536 YVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSD 595
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
V + +TL+D Y KC + + +F K L WN
Sbjct: 596 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWN 631
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 46/281 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F I P TC++++ T L +EA Y + +G+ PD +F + K+CA
Sbjct: 116 RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA 175
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------ 175
D K++H A + G+ SD F+ N LI+ Y C C++
Sbjct: 176 VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTS 235
Query: 176 ----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
P + + +F M VKPN +T+ ++L A A +DL++ K +H G
Sbjct: 236 LSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG 295
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY-----------GQWAMSA 270
++ + + L+ Y KC V A +F M + WN +++
Sbjct: 296 MVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFL 355
Query: 271 TVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPG 311
+ G+ +T + + G C + M +K+ G
Sbjct: 356 KMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG 396
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 55/235 (23%)
Query: 47 LEKCSTMRELK---QIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L C+ +++LK +IH +R SL+ + R+VF + + +
Sbjct: 272 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 331
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
+ N ++ Y + + F + +M G+ D + ++ C
Sbjct: 332 VSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC--------------- 376
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
+ N + +EA+++F +M+ KPN +T+ ++L A + + +
Sbjct: 377 --------MEN------------GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN 416
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
LR K +H V + T L+ Y KC ++ + ++F M + WN
Sbjct: 417 LRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 471
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+H VF+++ +++ N +V GY L EA YH M+ G+ PD + FP + +SC
Sbjct: 146 WHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSC 205
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------------CL--- 173
D + +++H+ ++FG A + + N L+ MY+ C C+
Sbjct: 206 GGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWN 265
Query: 174 ---------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ + +++F M + V+PN +T+ +V A D+ K +H +
Sbjct: 266 AMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKR 325
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF + V +L+ Y + +A +F +M
Sbjct: 326 GFATDVAFCNSLIQMYASLGMMGQARTVFSRM 357
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 44/244 (18%)
Query: 54 RELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGY 100
R +++HA +LR + C D R VF ++ + N+++ G+
Sbjct: 212 RMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGH 271
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDS 157
+ + M+ + P+ S+ + DI K++H A+K G A+D
Sbjct: 272 FENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDV 331
Query: 158 FLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIE 189
N+LI MY+S + Q PD+A++++ ME+
Sbjct: 332 AFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVN 391
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NV P+ +T+ + L A A L ++H+ + GF S+V + L++ Y K K + +A
Sbjct: 392 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKA 451
Query: 250 WDLF 253
++F
Sbjct: 452 IEVF 455
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 79/219 (36%), Gaps = 34/219 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF---PSLFK 133
R VFS++ + +++ GY +A Y M V + PD +
Sbjct: 349 QARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACA 408
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI----------- 182
+ V +LH A G S + N L+ MY+ +D+ E K
Sbjct: 409 CLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSS 468
Query: 183 ----------------FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
++R + +VKPN+VT + L A A LR+ K +H V G
Sbjct: 469 MIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGI 528
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
L L+D Y KC AW F K + WN
Sbjct: 529 AYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWN 567
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 70 FDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
+ A +R VF ++ + N+++ G H EA EM G +PD F
Sbjct: 432 LESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLS 491
Query: 130 S---LFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------ 174
+ +F CADI +H AIK G +D F+ ++LI+MY++C +D
Sbjct: 492 TVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDC 551
Query: 175 ----------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
+EA+ IF RM V+P VT +++ A LR K++H
Sbjct: 552 DAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLH 611
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ + F ++ + ++L+D YCKC V A +F + P
Sbjct: 612 AYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSP 652
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 33/214 (15%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL--- 131
DY ++ VF S+ NS++ GY EA + M+ G+ P F SL
Sbjct: 539 DYSMK-VFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPA 597
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---- 177
F + + + + KQLH+ I+ + F+ ++LI+MY C +D PD
Sbjct: 598 FGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSW 657
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV-KRVHKCVD 222
EA +F RME+ NVKPN +T + VLTA + A + K + +
Sbjct: 658 TAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSN 717
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ GF +E L D + + A++ +M
Sbjct: 718 QYGFVPSLEHCAALADTLGRAGDLDEAYNFISEM 751
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI----YTCNSIVRGYTNKN 104
KC + E ++IH++ FF ++ N + + NSI+ GY K
Sbjct: 529 KCGMIEEAEKIHSR------FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKE 582
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHN 161
+A + + M+ G+ PD+F + ++ +CA++ + KQ+H+Q IK L SD ++ +
Sbjct: 583 QSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 642
Query: 162 TLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKP 193
TL++MYS C L + +EAI++F RM +EN+KP
Sbjct: 643 TLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKP 702
Query: 194 NAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N VT +++L A A + + ++ + + G + + ++D K V RA +L
Sbjct: 703 NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALEL 762
Query: 253 FVKMLFPWNN 262
+M F ++
Sbjct: 763 IREMPFEADD 772
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 56/254 (22%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVR-----------------LVFSQIS 86
L C+ + EL+ Q+HA L++ D AD VR ++F
Sbjct: 288 LRSCAALSELRLGGQLHAHALKS----DFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 343
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
N + N+++ GY+ + +A L +H ++ GL D +F++CA + Q
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
++ AIK L+ D + N I+MY C L +
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
E + +F M ++P+ T ++L A L +H + +SG S+ + +
Sbjct: 464 GYETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCS 522
Query: 236 LMDAYCKCKFVSRA 249
L+D Y KC + A
Sbjct: 523 LIDMYSKCGMIEEA 536
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 67/276 (24%)
Query: 53 MRELKQIHAQMLRTSLFFDPC-ADYHVRL------------VFSQISNPTIYTCNSIVRG 99
+ E QI+ +++SL D C A+ + + VF ++ + N+I+
Sbjct: 398 LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAA 457
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQAIKFGLASDS 157
+ +E + M+ + PD F F S+ K+C + ++HS +K G+AS+S
Sbjct: 458 HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNS 517
Query: 158 FLHNTLINMYSSCWCL-------------------------------------------- 173
+ +LI+MYS C +
Sbjct: 518 SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISG 577
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+Q ++A +F RM + P+ T VL A K++H V + S
Sbjct: 578 YVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSD 637
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
V + +TL+D Y KC + + +F K L WN
Sbjct: 638 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWN 673
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 44/225 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA- 136
RLVF ++ N ++ N++V GY L+ EA + E+I V PD F FP L K+C
Sbjct: 163 RLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTG 222
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN---- 190
DI++ K +H A+K GL D F+ N +I +Y C L DEA+++F +M +N
Sbjct: 223 KCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL---DEAVELFDKMPEQNLISW 279
Query: 191 -----------------------------VKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ P+ T+V +L + ++ +H
Sbjct: 280 NSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMA 339
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ G + + L+D Y KC +S A LF K+ + WN+
Sbjct: 340 VKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNS 384
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ ++ + N+++ G+ +A FY EM G++PD F SL +C + +
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGL 532
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMY--------------------SSCWCL---- 173
K++H ++ GL +SF+ +L+++Y S CW
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSG 592
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ P+EA+ +F +M + ++P+ + + ++L A ++ L K VH ++
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMED 652
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +LMD Y K F+ + +F ++ + WN
Sbjct: 653 NFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWN 688
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 44/205 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISNPTI 90
L++ + ++ K+IH +LR SL+F ++ R F + +
Sbjct: 524 LLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNS 583
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
N+++ GY+ L +EA + +M+ GL PD S+ +C+ + + K++H
Sbjct: 584 VCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCF 643
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
A+K L D+F+ +L++MY+ L Q ++A
Sbjct: 644 ALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
+++F M+ + +P+ T + VL A
Sbjct: 704 VELFEDMKRSDKQPDRFTFLGVLQA 728
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 32/229 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPC-----ADYHVRLVFSQISNPTIYT 92
L++ + E K+IHA ++ L D C DY RL F+Q+SNP ++
Sbjct: 17 LQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRL-FNQVSNPNVFL 75
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQA 148
NSI+R YT+ +L+ + Y +++ + + PDRF FP +FKSCA + Y+ KQ+H
Sbjct: 76 YNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
KFG N LI+MY D +A K+F M +V ++ ++L+ AR
Sbjct: 136 YKFGPRFHVVTENALIDMYMK---FDDLVDAHKVFDEMSERDV----ISWNSLLSGYARL 188
Query: 209 RDLRTVKRV-HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ K + H +D++ + T ++ Y A D F +M
Sbjct: 189 GQMKKAKGLFHLMIDKT-----IVSWTAMISGYTGIGCYVEAMDFFREM 232
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + TI + +++ GYT + EA F+ EM + G+ PD S+ SCA
Sbjct: 197 LFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGS 256
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------- 178
+ + K +H A + GL + + N LI MYS C L Q +
Sbjct: 257 LELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISG 316
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A + F M+ VKPN +T + +L+A
Sbjct: 317 YAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSA 351
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 126/319 (39%), Gaps = 89/319 (27%)
Query: 47 LEKCSTMRELKQIHAQMLR---------TSLFFDPCADY------HVRLVFSQISNPTIY 91
LE+CS + ELKQIH Q+L+ S A + R+VF +IS+P
Sbjct: 18 LERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTV 77
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQA 148
N+++R Y+N N EA L YH+M+ + + + FP L K+C+ + Q+H Q
Sbjct: 78 MWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQI 137
Query: 149 IKFGLASDSFLHN-------------------------------TLINMYSSCWCLDQP- 176
IK G S+ + N T+I+ Y C ++
Sbjct: 138 IKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAY 197
Query: 177 ---------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
EA+ + +M + +KP+ +TL L+A A
Sbjct: 198 KIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLG 257
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQ 265
L K +H + ++ L L+D Y KC + +A +F K+ ++ W
Sbjct: 258 ALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTW----- 312
Query: 266 WAMSATVGPQGLVGRHSTA 284
+A +G + G+ S A
Sbjct: 313 ---TAIIGGFAVHGKGSEA 328
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 26/198 (13%)
Query: 46 SLEKCSTMRELKQ---IHAQMLRTSLFFDP---CA--DYHVR--------LVFSQISNPT 89
SL C+ + L+Q IH + + + DP CA D +V+ LVFS++
Sbjct: 249 SLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKC 308
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ----LH 145
+YT +I+ G+ EA ++ +M G+ P F F ++ +C+ + ++
Sbjct: 309 VYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFE 368
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
S + + + + ++++ L + E + E +KPNA ++L A
Sbjct: 369 SMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFV------ESMPIKPNAAIWGSLLNAC 422
Query: 206 ARARDLRTVKRVHKCVDE 223
+ L K + K + E
Sbjct: 423 HLHKHLELGKEIGKFLIE 440
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 42/249 (16%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS--NPTIYTCNSIVRGYTNKNLHHE 108
S +R+ + +++LR + H RL F Q+S N + + NS++ GY L+ +
Sbjct: 108 SLLRKSVALSSKLLRLYASIGRIEEAH-RL-FDQMSRRNRSAFAWNSLISGYAELGLYED 165
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
A Y +M +G++PDRF FP + K+C I V +++H ++ G A D F+ N L++
Sbjct: 166 AMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVD 225
Query: 166 MYSSCW-------------CLDQ---------------PDEAIKIFYRMEIENVKPNAVT 197
MY+ C C D P +A+ IF RM +P+AV
Sbjct: 226 MYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVA 285
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM- 256
+ V+T L+ ++H V G ++ + +L+ Y + +A LF M
Sbjct: 286 ISTVVTG---VPSLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMP 342
Query: 257 ---LFPWNN 262
+ WN+
Sbjct: 343 ERDVVSWNS 351
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 27/216 (12%)
Query: 69 FFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R VF +I + NS++ GY L +A + M+ G PD
Sbjct: 226 MYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVA 285
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS-------SCWCLDQPDE-- 178
++ + + Q+H ++ G+ + + N+LI +YS +CW D E
Sbjct: 286 ISTVVTGVPSLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERD 345
Query: 179 ----------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
AI F RM+ +V P+ VT V++L+A A ++ + + +
Sbjct: 346 VVSWNSIISAHRKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMR 405
Query: 223 ES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
E G +E +++ Y + + A+++ K +
Sbjct: 406 EDYGMIPSMEHYACMVNLYGRAGLIEEAYEIIEKRM 441
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 32/244 (13%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD------YHVRLVFSQISN 87
CL KC ++R +KQI A + +T L P CA ++ R +F I N
Sbjct: 8 CLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRN 67
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKS---CADIYVEKQ 143
P ++ N+++RG ++ + A + EM + + +PD F F L K+ C + Q
Sbjct: 68 PDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQ 127
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
LH A+ +GL S F+ TLI+MY+ C CL A K+F M ++PN V ++
Sbjct: 128 LHCLAVGYGLDSHLFVGTTLISMYAECACLVF---ARKVFDEM----IEPNIVAWNAIVA 180
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY 263
A R ++ ++V +C+ S ++ Y K + A ++F+KM P +
Sbjct: 181 ACFRCEGVKDAEQVFRCMPIRNLTSW----NIMLAGYTKAGELQLAREVFMKM--PLKDD 234
Query: 264 GQWA 267
W+
Sbjct: 235 VSWS 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 34/211 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ + ++++ G+ + ++AF F+ E+ +G+ P+ + +CA
Sbjct: 223 REVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQA 282
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ LH K G ++N LI+ YS C LD
Sbjct: 283 GAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMI 342
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR--DLRTVKRVHKCVDESG 225
+EAI++F ME N+KP+++T +++L A + A DL + V+ G
Sbjct: 343 AGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDL-GCSYFSRMVNTYG 401
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E ++D Y + + +A+D +M
Sbjct: 402 IEPVIEHYGCMVDLYGRAGKLQQAYDFVCQM 432
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 26/188 (13%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ P I N+IV +A + M ++ L M K+
Sbjct: 161 RKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAG--- 217
Query: 139 YVEKQLHSQA-IKFGLASD--------SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
E QL + +K L D F HN N +A F + E
Sbjct: 218 --ELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFN------------DAFAFFREVRRE 263
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
++PN V+L VL+A A+A + +H V++SGF + + L+D Y KC + A
Sbjct: 264 GMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMA 323
Query: 250 WDLFVKML 257
+F ML
Sbjct: 324 RLVFDNML 331
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 44/225 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA- 136
RLVF ++ N ++ N++V GY L+ EA + E+I V PD F FP L K+C
Sbjct: 163 RLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTG 222
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN---- 190
DI++ K +H A+K GL D F+ N +I +Y C L DEA+++F +M +N
Sbjct: 223 KCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL---DEAVELFDKMPEQNLISW 279
Query: 191 -----------------------------VKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ P+ T+V +L + ++ +H
Sbjct: 280 NSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMA 339
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ G + + L+D Y KC +S A LF K+ + WN+
Sbjct: 340 VKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNS 384
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ ++ + N+++ G+ +A FY EM G++PD F SL +C + +
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGL 532
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMY--------------------SSCWCL---- 173
K++H ++ GL +SF+ +L+++Y S CW
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSG 592
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ P+EA+ +F +M + ++P+ + + ++L A ++ L K VH ++
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMED 652
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +LMD Y K F+ + +F ++ + WN
Sbjct: 653 NFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWN 688
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 44/205 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISNPTI 90
L++ + ++ K+IH +LR SL+F ++ R F ++ +
Sbjct: 524 LLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNS 583
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
N+++ GY+ L +EA + +M+ GL PD S+ +C+ + + K++H
Sbjct: 584 VCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCF 643
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
A+K L D+F+ +L++MY+ L Q ++A
Sbjct: 644 ALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
+++F M+ + +P+ T + VL A
Sbjct: 704 VELFEDMKRSDKQPDRFTFLGVLQA 728
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
+R VF + I + N+++ G +H +A + EM L PD F S +F
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
++ K++H AI+ G +D F+ ++LI+MY+ C +D
Sbjct: 249 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 308
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
DE +K F +M I +KPN V+ +++ A A L K++H + S F
Sbjct: 309 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 368
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+V + + L+D Y KC + A +F KM
Sbjct: 369 DGNVFIASALVDMYAKCGNIRTARWIFDKM 398
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 41 HFCLVSLEKCSTMR---ELKQIHAQMLRTSL------------FFDPCADYHVRLVFSQI 85
+ C L+ S+++ + KQ+HAQ+LRTSL + + + L+F+ +
Sbjct: 6 NLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSL 65
Query: 86 -SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
S PT SI+R YT+ L + F+ +M+ G PD +FPS+ KSC D+
Sbjct: 66 PSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFG 125
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ +H I+ G+ D + N L+NMYS W L++ + K+F + +V
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDV 175
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 31/146 (21%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
NSI+ G + E F+ +M++ + P+ F S+ +CA +++ KQLH I+
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365
Query: 151 FGLASDSFLHNTLINMYSSC-------WCLDQPD---------------------EAIKI 182
+ F+ + L++MY+ C W D+ + +AI +
Sbjct: 366 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 425
Query: 183 FYRMEIENVKPNAVTLVNVLTARARA 208
F RME+E VKPN V + VLTA + A
Sbjct: 426 FKRMEVEGVKPNYVAFMAVLTACSHA 451
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 92/217 (42%), Gaps = 45/217 (20%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
L+ C+ M++L+ +H ++R + FD +YTCN+++ Y+ K
Sbjct: 113 LKSCTLMKDLRFGESVHGCIIRLGMGFD------------------LYTCNALMNMYS-K 153
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS-------QAIKFGLASD 156
E Y ++ +G +D+Y +K+ S + + D
Sbjct: 154 FWSLEEVNTYKKVFDEG-------------KTSDVYSKKEKESYYLGSLRKVFEMMPKRD 200
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
NT+I+ + ++A+ + M +++P++ TL +VL A +L K
Sbjct: 201 IVSWNTVISGNAQN---GMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKE 257
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+H +G+ + V + ++L+D Y KC V + +F
Sbjct: 258 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF 294
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 108/252 (42%), Gaps = 48/252 (19%)
Query: 50 CSTMREL---KQIHAQMLRTSL---FFDPCA--DYHVR--------LVFSQISNPTIYTC 93
CS++ EL KQ+H ++ L F C+ D + + + F QI NP I +
Sbjct: 372 CSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSW 431
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+I+ + + +EA F+ +MI GL PD + SL +C + +Q+HS +K
Sbjct: 432 NAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVK 491
Query: 151 FGLASDSFLHNTLINMYSSC---------------------W------CLD--QPDEAIK 181
G + + N+L+ MY+ C W CL Q E +
Sbjct: 492 IGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFR 551
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
++ M KP+++T+ +L A L +VH +SG V + L+D Y
Sbjct: 552 LYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYA 611
Query: 242 KCKFVSRAWDLF 253
KC + A D+F
Sbjct: 612 KCGSLKHARDVF 623
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 37/222 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
H VF++I + + +++ GY EA + +++ QG P+ F+F S+F +C
Sbjct: 313 HASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSAC 372
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS---------CWC-LDQPD----- 177
+ ++ KQ+H +KFGL + F +L +MY+ +C + PD
Sbjct: 373 SSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWN 432
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EAI F +M + P+++T +++L L +++H + +
Sbjct: 433 AIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKI 492
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
GF + + +L+ Y KC + A ++F + L WN
Sbjct: 493 GFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWN 534
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 58/284 (20%)
Query: 33 NINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH 77
N NS ++ + C+ R L K+IH +L+++ + C
Sbjct: 152 NSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMK 211
Query: 78 -VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
R VF + P + + S++ GY+ ++A + Y +M G PD+ F S+ K+C
Sbjct: 212 DARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACY 271
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV-- 191
DI + +QLH+ IK N LI+MY++ Q + A +F R+ +++
Sbjct: 272 IAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTN---FGQIEHASNVFTRIPTKDLIS 328
Query: 192 ------------------------------KPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+PN +V +A + +L K+VH
Sbjct: 329 WGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMC 388
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN 261
+ G +V +L D Y K F+ A F ++ P WN
Sbjct: 389 VKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWN 432
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 34/228 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F QI PT+ N ++RG++ + +EA Y+ M QGL+ + + LFK+CA D
Sbjct: 33 LFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPD 92
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPD------------ 177
+ +H++ +K G S ++ N LINMY SC L + P+
Sbjct: 93 VSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCG 152
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E + +F M + VK +AVT+V V+ A + + ++E+
Sbjct: 153 YGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEID 212
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
V L TL+D Y + V A +F +M W N W AM G G
Sbjct: 213 VYLGNTLIDMYGRRGLVHLARGVFDQM--QWRNLVSWNAMIMGYGKAG 258
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 66 TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
TSL AD V + +Y N+++ Y + L H A + +M + L+
Sbjct: 189 TSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWN 248
Query: 126 FMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
M K+ ++ ++L + D +I YS Q EA+++F
Sbjct: 249 AMIMGYGKA-GNLVAARELFDAMSQ----RDVISWTNMITSYSQA---GQFTEALRLFKE 300
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M VKP+ +T+ +VL+A A L + H + + + + + L+D YCKC
Sbjct: 301 MMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGV 360
Query: 246 VSRAWDLFVKM 256
V +A ++F +M
Sbjct: 361 VEKALEVFKEM 371
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F +S + + +++ Y+ EA + EM+ + PD S+ +CA
Sbjct: 264 RELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHT 323
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ V + H K+ + +D ++ N LI+MY C +++ A+++F M K ++
Sbjct: 324 GSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEK---ALEVFKEMR----KKDS 376
Query: 196 VTLVNVLTARA 206
V+ ++++ A
Sbjct: 377 VSWTSIISGLA 387
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 37/221 (16%)
Query: 79 RLVFSQISNPTIYTC-NSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA 136
+LVF I NP T N ++ T + E +H ++ L PD F +PS+ K+C+
Sbjct: 58 KLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS 117
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ K +H+ IK G A D + ++ + MY+ C +
Sbjct: 118 GLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNN 177
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
QP++A+++F M++ KP++VTL V+++ AR DL K +H + SG
Sbjct: 178 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 237
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
F + + L+D Y KC + A ++F ++ + WN+
Sbjct: 238 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 278
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 50/278 (17%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYH--------VRLVFSQISNPTI 90
+ C+ + +L K+IH +++R+ D D + + VF QI +
Sbjct: 214 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 273
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ NS++ GY+ K + M +G+ P S+ +C+ ++ + K +H
Sbjct: 274 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 333
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
I+ + +D F++++LI++Y C + + EA
Sbjct: 334 IIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEA 393
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ IF M VKP+A+T +VL A ++ L K +H + ES + + L+D
Sbjct: 394 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDM 453
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
Y KC V A +F ++ P ++ W +M A G G
Sbjct: 454 YAKCGAVDEALHIFNQL--PERDFVSWTSMIAAYGSHG 489
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + + + N ++ GY + EA + + +M G+ PD F S+ +C+ + V
Sbjct: 365 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 424
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
K++H+ I+ L + + L++MY+ C +D
Sbjct: 425 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 484
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWS 228
Q EA+K+F +M+ + KP+ VT + +L+A + A + ++ + E GF
Sbjct: 485 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 544
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
VE + L+D + + A+++
Sbjct: 545 AVEHYSCLIDLLGRVGRLREAYEIL 569
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
+R VF + I + N+++ G +H +A + EM L PD F S +F
Sbjct: 149 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 208
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
++ K++H AI+ G +D F+ ++LI+MY+ C +D
Sbjct: 209 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 268
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
DE +K F +M I +KPN V+ +++ A A L K++H + S F
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+V + + L+D Y KC + A +F KM
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKM 358
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 31/146 (21%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
NSI+ G + E F+ +M++ + P+ F S+ +CA +++ KQLH I+
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325
Query: 151 FGLASDSFLHNTLINMYSSC-------WCLDQPD---------------------EAIKI 182
+ F+ + L++MY+ C W D+ + +AI +
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385
Query: 183 FYRMEIENVKPNAVTLVNVLTARARA 208
F RME+E VKPN V + VLTA + A
Sbjct: 386 FKRMEVEGVKPNYVAFMAVLTACSHA 411
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 116 MIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M+ G PD +FPS+ KSC D+ + +H I+ G+ D + N L+NMYS W
Sbjct: 1 MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60
Query: 173 LDQ 175
L++
Sbjct: 61 LEE 63
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 116/279 (41%), Gaps = 58/279 (20%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
+ L C+ ++E ++IH ML+ L D D + + VF I++P
Sbjct: 188 IILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHP 247
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLH 145
+ + N+I+ G + + A + EM G P+ F S K+CA + + +QLH
Sbjct: 248 DVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLH 307
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
S IK SD F L++MYS C +D
Sbjct: 308 SSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHL 367
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F +M E++ N TL VL + A + ++ K++H +SG +S + +L+
Sbjct: 368 DAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLL 427
Query: 238 DAYCKCK--------FVSRAWD---LFVKMLFPWNNYGQ 265
D Y KC F R W+ + M+ ++ YG
Sbjct: 428 DTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGD 466
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 48/252 (19%)
Query: 58 QIHAQMLRTSLFFDPCADYHVRLVFSQI-------------SNPTIYTCNSIVRGYTNKN 104
++HA +++ DP H+ ++S+ S + + +S++ GY
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHN 161
EA L ++EM + G+ + F FPS+ K+C+ D+ + +++H A+ G SD F+ N
Sbjct: 62 FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121
Query: 162 TLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKP 193
TL+ MY+ C LD EA+ +F M + P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
N ++ +L A A ++ +++H + + G L+D Y K + A +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241
Query: 254 VKMLFP----WN 261
+ P WN
Sbjct: 242 QDIAHPDVVSWN 253
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 44/205 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTI 90
L S+ ++ KQIH +++ ++ D D + + +F + + +
Sbjct: 392 LKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDL 451
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
S++ Y+ EA Y +M + PD F+ SL +CA++ KQLH
Sbjct: 452 VAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVH 511
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
AIKFG D F N+L+NMY+ C ++ D EA
Sbjct: 512 AIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEA 571
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
+++F +M + V PN +TLV+VL A
Sbjct: 572 LRLFNQMLRDGVPPNHITLVSVLCA 596
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 119/275 (43%), Gaps = 51/275 (18%)
Query: 46 SLEKCSTM--REL-KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
+L+ C+ M +EL +Q+H+ +++ D A + R + +
Sbjct: 290 ALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKD 349
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
I N+++ GY+ H +A + +M + + ++ ++ KS A I V KQ+H+
Sbjct: 350 IIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHT 409
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
+IK G+ SD ++ N+L++ Y C +D+ +E
Sbjct: 410 ISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEE 469
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+K++ +M+ ++KP+ ++L A A K++H + GF + +L++
Sbjct: 470 ALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVN 529
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273
Y KC + A F ++ N G + SA +G
Sbjct: 530 MYAKCGSIEDADRAFSEI----PNRGIVSWSAMIG 560
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 116/281 (41%), Gaps = 76/281 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--PCADY----------HVRLVFSQISNP 88
H L LEKC T+ LKQ+HA M+ T L F P + H +F+ I NP
Sbjct: 10 HPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNP 69
Query: 89 TIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCAD---IYVEKQ 143
TI+ N+++ N H H AF Y ++ L P+ F FPSLFK+C + +
Sbjct: 70 TIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRA 129
Query: 144 LHSQAIKFGLAS-DSFLHNTLINMYSSCW----C------LDQPD--------------- 177
LH+ +KF + D F+ L+N Y+ C C + +PD
Sbjct: 130 LHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNS 189
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
E + +F M+ +K N VTLV +++A A L G
Sbjct: 190 GAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGAL-----------SQGA 238
Query: 227 WSHVE-----------LKTTLMDAYCKCKFVSRAWDLFVKM 256
W+HV + T L+D Y KC + A LF ++
Sbjct: 239 WAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQL 279
>gi|255542118|ref|XP_002512123.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549303|gb|EEF50792.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 36/234 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++S+ + + +++ GYT NL ++A + + G++P+ S +CA
Sbjct: 159 RSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLFLDKKWAGILPNDVTIVSALAACARM 218
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W---- 171
++ + + +H AIK G A + L N L++MY+ C W
Sbjct: 219 GNLNLGRSIHGLAIKLGFAEPT-LMNALVHMYAKCHMNRDASYLFETASEKDVVSWNSII 277
Query: 172 --C--LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CVDESGF 226
C + P EA+ +F RM E+V P+AVTLV+V +A A L+ +H V E
Sbjct: 278 SGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGALQVGSSLHAYSVKEGLL 337
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVG 279
S+V + T L+ Y KC A +F M N W AM G QG G
Sbjct: 338 SSNVYVSTALLTFYAKCGDAGSARTIFDGM--QEKNTVTWSAMIGGYGVQGDAG 389
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 53/267 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLR---------TSL--FFDPCADYHV-RLVFSQISNPTIY 91
+ CS +R++ +++H Q+++ T L F+ C + R F + + +
Sbjct: 11 IRACSELRDIDEGRKLHCQIIKAGPPDSFVLTGLTDFYAKCGEIECSRCAFDENLDRNVV 70
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ S++ GY + E + ++ M +GLI ++F L +C ++ K H
Sbjct: 71 SWTSMIVGYVQNDCPVEGLILFNRM-REGLIEGNQFTLGILVTACTKLGALHQGKCFHGY 129
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----DE------------------------A 179
AIK G+ +S+L L++MY C + DE A
Sbjct: 130 AIKSGVQLNSYLMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDA 189
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F + + PN VT+V+ L A AR +L + +H + GF + L L+
Sbjct: 190 LKLFLDKKWAGILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLGF-AEPTLMNALVHM 248
Query: 240 YCKCKFVSRAWDLF----VKMLFPWNN 262
Y KC A LF K + WN+
Sbjct: 249 YAKCHMNRDASYLFETASEKDVVSWNS 275
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 50/260 (19%)
Query: 52 TMRELKQIHAQMLRTSLFFDP------------CADYHV-RLVFSQISN-PTIYTCNSIV 97
+R +Q+HA++L + D C + R VF ++ N ++ N ++
Sbjct: 83 AVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLI 142
Query: 98 RGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGL 153
R Y A Y M+ G + PD F +P + K+CA D+ +++H + ++
Sbjct: 143 RAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNW 202
Query: 154 ASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYR 185
A+D F+ LI+MY+ C C+D+ P EA+ +
Sbjct: 203 ATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRN 262
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M E + P TLV+ ++A A A L + +H GF S +LKT+L+D Y K +
Sbjct: 263 MAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGW 322
Query: 246 VSRAWDLFVKM----LFPWN 261
V A LF ++ L WN
Sbjct: 323 VMVAHVLFEQLLHRELISWN 342
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 120/304 (39%), Gaps = 84/304 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL--------------FFDPCAD---YHVRLVFS 83
H L L C T++ L+ IHAQM++T L P D Y + VF
Sbjct: 3 HPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAIS-VFE 61
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA------- 136
I P + N++ RG+ + A Y MI GL+P+ + FP L KSCA
Sbjct: 62 TIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKE 121
Query: 137 ---------------DIYVEKQLHSQAIKFGLASDS------------FLHNTLINMYSS 169
D+YV L S +K G D+ + LI Y+S
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181
Query: 170 CWCLDQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNV 201
++ EA+ +F M NVKP+ T+V V
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KML 257
++A A++ ++ ++VH +D+ G S++++ L+D Y KC V A LF K +
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDV 301
Query: 258 FPWN 261
WN
Sbjct: 302 ISWN 305
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+I+ GY + + EA + EM+ + PD ++ +CA
Sbjct: 191 MFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGS 250
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC----- 172
I + +Q+HS GL S+ + N LI++YS C W
Sbjct: 251 IQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGG 310
Query: 173 ---LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
L+ EA+ +F M PN VT++++L A A+ + + +H +D+ G
Sbjct: 311 YTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVT 370
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+T+L+D Y KC + A +F M
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAHQVFNSM 399
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 60 HAQMLRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
+A LRTSL + C D VF+ + + T+ CN+++ G+ + AF + M
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRM 430
Query: 117 IVQGLIPDRFMFPSLFKSCA 136
G+ PD F L +C+
Sbjct: 431 RKNGIEPDDITFVGLLSACS 450
>gi|255572347|ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533535|gb|EEF35275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 364
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 52/268 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLV----------------FSQISNPTI 90
L KC+T+ +QI ++ T F + +L+ F QI P+
Sbjct: 9 LPKCTTLSHAEQIQCHLITTGHFQFKISSSRSKLLEFFALSLNNLSVAIKAFYQILTPST 68
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
N+++RG ++F +Y MI D + K+CA + QLHS
Sbjct: 69 NDWNAVLRGLIQSPDPIDSFKWYKTMIRGSYKVDALTCSFVLKACARVLAFSESTQLHSH 128
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
++ G +D+ L TL+++Y+ LD +P EA
Sbjct: 129 IVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDIASWNALISGFAQGNKPSEA 188
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F RME+ KPN +T++ L+A ++ + +++H+ + +V++ +D
Sbjct: 189 LGLFKRMEVLGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQVCNAAIDM 248
Query: 240 YCKCKFVSRAWDLFVKM-----LFPWNN 262
Y KC F +A+ +F M L WN
Sbjct: 249 YAKCGFADKAYLVFESMSCGKSLVTWNT 276
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
+R VF ++ + N+++ G H EA EM G +PD F + +F
Sbjct: 123 MRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAE 182
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
CADI +H AIK G +D F+ ++LI+MY++C +D
Sbjct: 183 CADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSM 242
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA+ IF RM V+P VT +++ A LR K++H + + F
Sbjct: 243 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARF 302
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
++ + ++L+D YCKC V A +F + P
Sbjct: 303 NDNIFISSSLIDMYCKCGNVDIARRVFNGIQSP 335
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 33/214 (15%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL--- 131
DY ++ VF S+ NS++ GY EA + M+ G+ P F SL
Sbjct: 222 DYSMK-VFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPA 280
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---- 177
F + + + + KQLH+ I+ + F+ ++LI+MY C +D PD
Sbjct: 281 FGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSW 340
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV-KRVHKCVD 222
EA +F RME+ NVKPN +T + VLTA + A + K + +
Sbjct: 341 TAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSN 400
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ GF +E L D + + A++ +M
Sbjct: 401 QYGFVPSLEHCAALADTLGRAGDLDEAYNFISEM 434
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 34/233 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ +F + +Y+ N ++ GY L+ EAF + +M+ + PD+ F S+ +CAD
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ ++L++ +K G +D F+ LINM+ C +
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+A +F RME E V+P+ V V++L A L K+VH + E G+
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
+ + + T ++ Y KC + A ++F L N W AM A G +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIAGFAQHGRI 394
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCAD 137
VF +IS + N+++ Y + A + ++ +G+ P+ F S+ KS
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPDE----------- 178
+ + K +H +K GL SD + N L++M+ +C L D P
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A F M+ +KP+ +T +L A A L +R+H + E+ F
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V + T L+ Y KC + A +F K+ P N W
Sbjct: 650 VLVGTGLISMYTKCGSIEDAHQVFHKL--PKKNVYSW 684
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF + + T S++ G +A + M +G+ PD+ F SL ++C
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEA 327
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ K++H++ + G ++ ++ +++MY+ C ++
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
DEA F +M ++PN VT +++L A + L+ +++ + E+G+ S
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++T L+ Y KC + A +F K+ + WN
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWN 483
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 33/230 (14%)
Query: 59 IHAQMLRTSLFFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
+H S+F + C D + +F+ + + + N+I+ G+ + AF ++ M
Sbjct: 549 LHVSNALVSMFVN-CGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ 607
Query: 118 VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
G+ PD+ F L +CA + ++LH+ + D + LI+MY+ C ++
Sbjct: 608 ESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIE 667
Query: 175 ----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
+ EA+++FY+M+ E VKP+ +T V L+A A
Sbjct: 668 DAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACA 727
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A + + + E +E ++D + + ++ A + +KM
Sbjct: 728 HAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKM 777
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 34/213 (15%)
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W 171
FK+ D +++++ K G+ D F+ NTLINMY+ C W
Sbjct: 123 FKNLGD---GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSW 179
Query: 172 CL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
L +EA K+ +M ++VKP+ T V++L A A AR++ + ++ + +
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHS 282
+G+ + + + T L++ + KC + A +F + P + W +M + G +
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNL--PTRDLVTWTSMITGLARHGRFKQAC 297
Query: 283 TAHQISGPCPKKAHKLFFFSMLKKVHVPGVLIQ 315
Q + K+ F S+L+ + P L Q
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
VF ++ +Y+ S++ GY EA +++M +G+ PD F +CA
Sbjct: 672 VFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731
Query: 140 VEKQLHS-QAIK-FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+E+ LH Q++K F + + +++++ L +EA++ +M++E
Sbjct: 732 IEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL---NEAVEFIIKMQVE 780
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 50/260 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL-----FFDP-----CAD-----YHVRLVFSQISNPTIY 91
LE C+TM E+ QIH+Q ++T L F C Y+ R VF +I P+++
Sbjct: 42 LETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVF 101
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYVE--KQLHSQA 148
N++++GY+ N Y M+V + PD F FP L K D+ ++ K L + A
Sbjct: 102 IWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHA 161
Query: 149 IKFG-LASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+ G L S+ F+ I+++S C ++ + +E+
Sbjct: 162 VIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEES 221
Query: 180 IKIFYRME--IENVKPNAVTLVNVLTARARARDLRTVKRVH-KCVDESGFWSHVELKTTL 236
++F ME E V PN+VTLV +L+A ++ +DL K ++ K + E ++ L+ L
Sbjct: 222 KRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENAL 281
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
+D + C + A +F +M
Sbjct: 282 IDMFASCGEMDAARGVFDEM 301
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F + C R F Q+ + +++ GY N E + +M + + PD F
Sbjct: 316 FANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTM 375
Query: 129 PSLFKSCADIYVEKQLHSQAIKFG-----------LASDSFLHNTLINMYSSCWCLDQPD 177
S+ +CA H A++ G + +D+F+ N LI+MY C +
Sbjct: 376 VSILTACA--------HLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC---GNVE 424
Query: 178 EAIKIFYRME 187
+A KIF M+
Sbjct: 425 KAKKIFNEMQ 434
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+++ E + +F M++ NVKP+ T+V++LTA A L + +D++ + +
Sbjct: 350 MNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFI 409
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKML----FPW---------NNYGQWAMS 269
L+D Y KC V +A +F +M F W N +G+ A++
Sbjct: 410 GNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459
>gi|302754724|ref|XP_002960786.1| hypothetical protein SELMODRAFT_268 [Selaginella moellendorffii]
gi|300171725|gb|EFJ38325.1| hypothetical protein SELMODRAFT_268 [Selaginella moellendorffii]
Length = 890
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 36/254 (14%)
Query: 59 IHAQMLRTSLF--FDPCADYHVRLVFSQIS---NPTIYTCNSIVRGYTN-KNLHHEAFLF 112
+H ++RT+L F C D + Q + T+ + N ++ Y+ + H+AF
Sbjct: 200 LHDIVVRTALIGMFSRCGDIRSCEMLFQTTVCHEGTLSSWNVMLGVYSEHEKQQHKAFHL 259
Query: 113 YHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-- 170
+ M++QGL+PDR F +L +C + K + ++ GL D + L+ MY C
Sbjct: 260 FRRMLLQGLLPDRVSFLALLSACRSLDCGKSVEGWILEAGLEGDLVVGAALVGMYGRCGS 319
Query: 171 -------------------W------CLD--QPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
W C+D A+++F RM+++ VK N VTLV+VL+
Sbjct: 320 LVDAFQVFQNFENDADMVFWNSMIAACVDAHASSMALELFRRMQLQGVKHNKVTLVSVLS 379
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY 263
A A+ ++ K++H+ + +G L+ L++ Y C + A ++FV + W
Sbjct: 380 ACAKCHNISYGKQLHEHLVVTGIDRDEYLQNALLNLYGVCGSLKDALNVFVN-VERWTVV 438
Query: 264 GQWAMSATVGPQGL 277
AM A + GL
Sbjct: 439 SCTAMMAALSDNGL 452
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 119/291 (40%), Gaps = 51/291 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTI 90
L + KC + KQ+H ++ T + + C L VF + T+
Sbjct: 378 LSACAKCHNISYGKQLHEHLVVTGIDRDEYLQNALLNLYGVCGSLKDALNVFVNVERWTV 437
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQ 147
+C +++ ++ LH EA + + M+++G+ D+ + SL +S + + E+ L ++
Sbjct: 438 VSCTAMMAALSDNGLHAEAMVLFRMMLLEGVAADKVTYISLLQSSRNFHPEELLRVANAG 497
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD-------------------------------QP 176
GL D + ++ YS C ++ Q
Sbjct: 498 IHALGLVEDVIIATGVLRSYSQCKQVERAVQVFNRMRFAGQDDAVTWTSMLSAYADNGQH 557
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++A+++ +RM++E +KP+ V L A A LR VH V+ +G + + + L
Sbjct: 558 EKAVELLHRMQLEGLKPDKSAFVKALNACAACGRLRLGALVHANVEVAGATLNAGVGSAL 617
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+ Y + A +LF K+ P + W +A V G+H A Q+
Sbjct: 618 VGLYGSLGKLETARELFEKL--PHKDVFSW--TALVSAYSDAGQHEAAVQV 664
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 34/233 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ +F + +Y+ N ++ GY L+ EAF + +M+ + PD+ F S+ +CAD
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ ++L++ +K G +D F+ LINM+ C +
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+A +F RME E V+P+ V V++L A L K+VH + E G+
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
+ + + T ++ Y KC + A ++F L N W AM A G +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIAGFAQHGRI 394
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 33/233 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCAD 137
VF +IS + N+++ Y + A + ++ +G+ P+ F S+ KS
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPDE----------- 178
+ + K +H +K GL SD + N L++M+ +C L D P
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A F M+ +KP+ +T +L A A L +R+H + E+ F
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHS 282
V + T L+ Y KC + A +F K+ P N W T Q G+ +
Sbjct: 650 VLVGTGLISMYTKCGSIEDAHQVFHKL--PKKNVYSWTSMITGYAQHGRGKEA 700
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF + + T S++ G +A + M +G+ PD+ F SL ++C
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEA 327
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ K++H++ + G ++ ++ +++MY+ C ++
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
DEA F +M ++PN VT +++L A + L+ +++ + E+G+ S
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++T L+ Y KC + A +F K+ + WN
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWN 483
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 33/230 (14%)
Query: 59 IHAQMLRTSLFFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
+H S+F + C D + +F+ + + + N+I+ G+ + AF ++ M
Sbjct: 549 LHVSNALVSMFVN-CGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ 607
Query: 118 VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
G+ PD+ F L +CA + ++LH+ + D + LI+MY+ C ++
Sbjct: 608 ESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIE 667
Query: 175 ----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
+ EA+++FY+M+ E VKP+ +T V L+A A
Sbjct: 668 DAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACA 727
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A + + + E +E ++D + + ++ A + +KM
Sbjct: 728 HAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKM 777
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 34/213 (15%)
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W 171
FK+ D +++++ K G+ D F+ NTLINMY+ C W
Sbjct: 123 FKNLGD---GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSW 179
Query: 172 CL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
L +EA K+ +M ++VKP+ T V++L A A AR++ + ++ + +
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHS 282
+G+ + + + T L++ + KC + A +F + P + W +M + G +
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNL--PTRDLVTWTSMITGLARHGRFKQAC 297
Query: 283 TAHQISGPCPKKAHKLFFFSMLKKVHVPGVLIQ 315
Q + K+ F S+L+ + P L Q
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
VF ++ +Y+ S++ GY EA +++M +G+ PD F +CA
Sbjct: 672 VFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731
Query: 140 VEKQLHS-QAIK-FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+E+ LH Q++K F + + +++++ L +EA++ +M++E
Sbjct: 732 IEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL---NEAVEFIIKMQVE 780
>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
Length = 730
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 41/236 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ P + N+++ G+ F F+ M QGLIPDRF F + C +
Sbjct: 165 VFTNTPEPNCVSYNALITGFVENQQLERGFEFFKLMXQQGLIPDRFAFMGVLGICTTTEN 224
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------------------S 169
+ +LH Q +K L S F+ N +I MYS +
Sbjct: 225 LKRGTELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAA 284
Query: 170 CWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C D + +++F M E NV+P+ T + L A A + K++H + + +
Sbjct: 285 CSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTSLYR 344
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGR 280
+ + L++ Y KC + A+D+F KM L WN + A G GL R
Sbjct: 345 DLGVDNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNT-----IIAGFGNHGLGER 395
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 59 IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNL 105
+HA +L+T D HV R VF ++ + + ++++ GY
Sbjct: 32 LHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQAGE 91
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNT 162
A Y +M L+P+ ++F S+ +CA + Q +HS+++KFG S SF+ N+
Sbjct: 92 PQMAIDLYSQMF---LVPNEYVFASVISACASLSALTQGQKIHSRSLKFGYESISFVSNS 148
Query: 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
LI+MY C +Q +A+ +F +PN V+ ++T + L K +
Sbjct: 149 LISMYMKC---NQCSDALSVF----TNTPEPNCVSYNALITGFVENQQLERGFEFFKLMX 201
Query: 223 ESGF 226
+ G
Sbjct: 202 QQGL 205
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 48/206 (23%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQ-------------ISNPTI 90
L C+T LK ++H Q ++ +L P + ++S+ I +
Sbjct: 216 LGICTTTENLKRGTELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDV 275
Query: 91 YTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ N+++ ++ + H + +F H + PD F F S +CA + KQ+H+
Sbjct: 276 ISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHA 335
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
++ L D + N L+NMY+ C C+ +
Sbjct: 336 HLMRTSLYRDLGVDNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGER 395
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTA 204
A+++F +M ++P++VT + +LTA
Sbjct: 396 AVELFEQMNAIGIRPDSVTFIGLLTA 421
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPT 89
L + ++M KQIHA ++RTSL+ D C Y +FS++ +
Sbjct: 318 LAACAGLASMSHGKQIHAHLMRTSLYRDLGVDNALVNMYAKCGCIGYAYD-IFSKMVHHN 376
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+ + N+I+ G+ N L A + +M G+ PD F L +C
Sbjct: 377 LVSWNTIIAGFGNHGLGERAVELFEQMNAIGIRPDSVTFIGLLTAC 422
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 32/212 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
R +F +I P + T ++ T EA +Y++ + + PD+ + S+ K+C
Sbjct: 29 RARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKAC 88
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------- 176
A D+ K++H AI+FG SD L N LI+MY C C +
Sbjct: 89 ASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWT 148
Query: 177 ------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EA+ F +M + +PN+VT+ ++L A +DL++ + VH V +
Sbjct: 149 SMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRN 208
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +V + + L++ Y C + +A +F M
Sbjct: 209 GMGGNVFVSSALVNMYASCLSIRQAQLVFDSM 240
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 111/300 (37%), Gaps = 91/300 (30%)
Query: 44 LVSLEK-CSTMREL---KQIHAQMLRTSLFFDPCADY-----------------HVRLVF 82
L+S+ K C+++R++ K++H +R F C+D RLVF
Sbjct: 81 LLSVAKACASLRDVMNAKRVHEDAIR----FGFCSDVLLGNALIDMYGKCRCSEGARLVF 136
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY--- 139
+ + + S+ Y N L EA + +M + G P+ S+ +C D+
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------- 176
+++H ++ G+ + F+ + L+NMY+SC + Q
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256
Query: 177 -----DEAIKIFYRMEIENV-----------------------------------KPNAV 196
++ + +F RM E V KPN +
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T+ +VL A LR K++H + F+ + T L+ Y KC + + +F M
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 178 EAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EAI+ + +N V+P+ + L++V A A RD+ KRVH+ GF S V L L
Sbjct: 60 EAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNAL 119
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSAT 271
+D Y KC+ A +F M P+ + W A+
Sbjct: 120 IDMYGKCRCSEGARLVFEGM--PFRDVISWTSMAS 152
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 52 TMRELKQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTIYTCNSIVR 98
++R KQIH + R F D C D + R VFS ++ + N+++
Sbjct: 330 SLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMII 389
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYVEKQL---HSQAIKFGLA 154
+ EA L + EM+ G+ P+ F + C+ V++ L S + +
Sbjct: 390 ATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVE 449
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
D+ H+ ++++ S L++ E IK +M IE
Sbjct: 450 PDADHHSCMVDVLSRAGRLEEAYEFIK---KMPIE 481
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 151/339 (44%), Gaps = 70/339 (20%)
Query: 12 RTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLE-KCSTMRELKQIHAQMLRTSLFF 70
R SS NS ++ N+ N H L +L+ KC+ LKQIH Q++ T L F
Sbjct: 125 RNITKSSSNSNFLDFMKPKNHIFN-----HPTLQTLQQKCNNFNTLKQIHTQIITTGLSF 179
Query: 71 DP-CADYHVRL-----------VFSQISNPTIYTCNSIVRGY---TNKNLHHEAFLFYHE 115
C + +++ +F+ ISNPTI+ N+++ TN+N H AF Y++
Sbjct: 180 QTYCLSHLIKISSKFNLPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNK 239
Query: 116 MIV-QGLIPDRFMFPSLFKSCAD----IYVEKQLHSQAIKFGLAS-DSFLHNTLINMYS- 168
++ + L P+ F FPSLFK+C + LH+ +KF D+F+ +L+N Y+
Sbjct: 240 ILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAK 299
Query: 169 ------SCWCLD---QPD-------------------------------EAIKIFYRMEI 188
S + D +PD E++ +F M++
Sbjct: 300 YGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQV 359
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++PN VT+V +++A + + VH V + + + T +D Y KC ++
Sbjct: 360 IGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNL 419
Query: 249 AWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
A +F KM P N+ + +A +G + G + A ++
Sbjct: 420 ACQVFDKM--PENDRDSFCYTAMIGGFAVHGYGNQALEL 456
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 31/257 (12%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL---------FFDP-CADYHV---RLVFSQISNP 88
+ L++C + + K++H + RT L D C HV R VF +
Sbjct: 131 IVLKQCVGLMDFNKGKEVHCVISRTGLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIER 190
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS------CADIYVEK 142
+ + S++ GY N EA + + M V+GL P+ F + + C +V
Sbjct: 191 DVVSWTSMICGYCNIGTLEEALVLFERMKVEGLEPNDFTWNXMIAGYARDGDCNGAFV-- 248
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL 202
L S+ ++ GL D N +I+ ++ + EA ++F M + +KPN VT+ +L
Sbjct: 249 -LFSRMVREGLVPDLVTWNAMISGFTQSL---KAVEAWRLFQDMXVAGIKPNQVTVTGLL 304
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
A + K +H + G +V + T L+D Y KC V AWD+F ++ P N
Sbjct: 305 PACGLMGSIHRGKELHGLIYRMGXDMNVFVATALIDXYSKCGTVKDAWDVFDRI--PIKN 362
Query: 263 YGQW-AMSATVGPQGLV 278
W AM G GLV
Sbjct: 363 VASWNAMIGCYGKHGLV 379
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 108/286 (37%), Gaps = 45/286 (15%)
Query: 49 KCSTMRELKQIHAQMLRTSL-------------FFDPCADYH-VRLVFSQISNPTIYTCN 94
KC ++ KQ+HA +L + + + C D RLV + NP ++ N
Sbjct: 36 KCKALQPGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNPNVFAFN 95
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKF 151
+V H EA ++ M G++ ++F F + K C D K++H +
Sbjct: 96 WMVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGKEVHCVISRT 155
Query: 152 GLASDSFLHNTLINMYSSC---------------------------WC-LDQPDEAIKIF 183
GL + + N+ I+MY C +C + +EA+ +F
Sbjct: 156 GLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIERDVVSWTSMICGYCNIGTLEEALVLF 215
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
RM++E ++PN T ++ AR D + + G + ++ + +
Sbjct: 216 ERMKVEGLEPNDFTWNXMIAGYARDGDCNGAFVLFSRMVREGLVPDLVTWNAMISGFTQS 275
Query: 244 KFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289
AW LF M Q ++ + GL+G ++ G
Sbjct: 276 LKAVEAWRLFQDMXVAGIKPNQVTVTGLLPACGLMGSIHRGKELHG 321
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 32/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
F+++S+ I T NS++ GY + A ++++ + + PD + +CA D
Sbjct: 487 TFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLND 546
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ +H +K G SD + N LI+MY+ C L +
Sbjct: 547 LDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIA 606
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
EAI F++M +EN PN+VT V+VL A A R H C+ + GF S
Sbjct: 607 AYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L+D Y KC + + LF +M
Sbjct: 667 NTLVGNSLIDMYAKCGQLDYSEKLFNEM 694
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------------FFDPCADYHVRLVFSQISNPTIYT 92
L C + L QIHAQ++ + F C R VF NP+
Sbjct: 39 LSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCD--LARSVFDSTPNPSRIL 96
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAI 149
NS++R YT ++EA Y+ M+ +GL PD++ F + K+C ++ H +
Sbjct: 97 WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEID 156
Query: 150 KFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIK 181
+ GL D F+ L++MYS L + P EA+
Sbjct: 157 RRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVD 216
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M++ V+P++V+L+N+ + ++ + +H V F S V L+D Y
Sbjct: 217 FFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYS 274
Query: 242 KCKFVSRAWDLFVKML 257
KC V A +F +M+
Sbjct: 275 KCGDVDVARRVFDQMV 290
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 57/289 (19%)
Query: 24 INLDNINNNNIN--SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------F 69
+ L N+ N ++ S + A + LEK K+IH L+ +
Sbjct: 320 MKLGNVRINKVSAVSAFLAAAETIDLEKG------KEIHGCALQQRIDSDILVATPLMVM 373
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C + + +F + + ++I+ EA + EM Q + P+R
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------- 170
S+ +CAD+ + K +H +K + SD L++MY+ C
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493
Query: 171 -----WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
W + P AI +FY++ + + P+A T+V V+ A A DL +
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF-----PWN 261
H + + GF S +K L+D Y KC + A LF K F WN
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 49 KCSTMRELKQIHAQMLRTSL----------FFDPCADYHV-RLVFSQISNPTIYTCNSIV 97
K S + + IH + R + C D V R VF Q+ + + +++
Sbjct: 242 KLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMM 301
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
GY + E + +M + + ++ S F + A D+ K++H A++ +
Sbjct: 302 AGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRID 361
Query: 155 SDSFLHNTLINMYSSC----------WCLDQ------------------PDEAIKIFYRM 186
SD + L+ MY+ C W L P+EA+ +F M
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM 421
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ + +KPN VTL+++L A A L+ K +H ++ S + T L+ Y KC F
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFF 481
Query: 247 SRAWDLFVKM----LFPWNN 262
+ A F +M + WN+
Sbjct: 482 TAALTTFNRMSSRDIVTWNS 501
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 39/220 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF----MFPSLFK 133
R VF ++ + N+++ G + EA F+ M + G+ P +FP + K
Sbjct: 183 AREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICK 242
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD----- 177
++I + + +H + +S + N LI++YS C +DQ D
Sbjct: 243 -LSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
E +++F +M++ NV+ N V+ V+ A A DL K +H C +
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359
Query: 226 FWSHVELKTTLMDAYCKCKFVSRA----WDLFVKMLFPWN 261
S + + T LM Y KC +A W L + L W+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWS 399
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
L N++I Y+ Q +EA++++Y M + ++P+ T VL A A +L+
Sbjct: 95 ILWNSMIRAYTRS---KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
H +D G V + L+D Y K + RA ++F KM + WN
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 46/251 (18%)
Query: 57 KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTIYTCNSIVRGYTNK 103
+QIH +LRT DP VFS+ + + +++ GY N
Sbjct: 328 RQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENC 387
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
+ +A Y M +G++PD + +C+ ++ + LH A + GL S S +
Sbjct: 388 LMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVA 447
Query: 161 NTLINMYSSCWCLDQPDE------------------AIKI---------FYRMEIENVKP 193
N+LI+MY+ C C+D+ E ++I F+R I +KP
Sbjct: 448 NSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKP 507
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
N+VTLV VL+A AR L K +H +G + ++D Y +C + AW F
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567
Query: 254 VKM---LFPWN 261
+ + WN
Sbjct: 568 FSVDHEVTSWN 578
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTI 90
L C M L ++IH ++R D C D + RLVF ++ N
Sbjct: 214 LRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDR 273
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY + E + MI + PD S+ +C D + +Q+H
Sbjct: 274 ISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGY 333
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
++ D +HN+LI MYSS +++ P +A
Sbjct: 334 VLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKA 393
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ + ME E + P+ +T+ VL+A + +L +H+ + G S+ + +L+D
Sbjct: 394 LETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDM 453
Query: 240 YCKCKFVSRAWDLF 253
Y KCK + +A ++F
Sbjct: 454 YAKCKCIDKALEIF 467
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 31/206 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ +++ N +V GY L EA YH M+ G+ PD + FP + ++C +
Sbjct: 163 VFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPN 222
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ +++H I++G SD + N LI MY C ++
Sbjct: 223 LVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISG 282
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E +++F M V P+ +T+ +V+TA D R +++H V + F
Sbjct: 283 YFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRD 342
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVK 255
+ +L+ Y + A +F +
Sbjct: 343 PSIHNSLIPMYSSVGLIEEAETVFSR 368
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F I + SI+ G N EA F+ EMI + L P+ + +CA I
Sbjct: 466 IFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMI-RRLKPNSVTLVCVLSACARIGA 524
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
K++H+ A++ G++ D F+ N +++MY C ++
Sbjct: 525 LTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVTSWNILLTGY 584
Query: 175 ----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+ A ++F RM NV PN VT +++L A +R+
Sbjct: 585 AERGKGAHATELFQRMVESNVSPNEVTFISILCACSRS 622
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
F N L+ Y+ D EA+ +++RM VKP+ T VL +L + +
Sbjct: 173 FSWNVLVGGYAKAGLFD---EALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREI 229
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H V GF S V++ L+ Y KC V+ A +F KM
Sbjct: 230 HVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 39/233 (16%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP----------------- 88
SL C T+ +LKQ+H Q+ + L P + ++I++P
Sbjct: 31 SLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDV 90
Query: 89 ----TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEK 142
++ NS++RGY++ L EA L Y M+V G+ P+ + FP + C I + E
Sbjct: 91 RSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEG 150
Query: 143 -QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201
Q+H +K GL D F+ N LI+ Y+ C +D K+F M NV V+ ++
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGH---KVFEGMSERNV----VSWTSL 203
Query: 202 LTARARA-RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ AR R V + +++ + L+D Y KC + A LF
Sbjct: 204 ICGYARGDRPKEAVSLFFEMLNKV-------MVNALVDMYMKCGAIDAAKRLF 249
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 32/265 (12%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQ 84
Y F L K + E Q+H +++ L F+ C H VF
Sbjct: 132 YTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEG 191
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL 144
+S + + S++ GY + EA + EM+ + ++ ++ C I K+L
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVN---ALVDMYMKCGAIDAAKRL 248
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ + L L+NT+++ Y+ EA+ I M + +P+ VT+++ ++A
Sbjct: 249 FDECVDRNLV----LYNTILSNYAR---QGLAREALAILDEMLQQGPRPDRVTMLSAISA 301
Query: 205 RARARDLRTVKR-----VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
A+ DL K VH ++++G + L T L+D + +C A +F KM
Sbjct: 302 SAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM--T 359
Query: 260 WNNYGQWAMSATVGPQGLVGRHSTA 284
+ W +A +G + G A
Sbjct: 360 ERDVSAW--TAAIGTMAMEGNGEGA 382
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L KQIHA++L+ +F+ C + V ++FS++
Sbjct: 71 LQGCVYERDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFEVAEVLFSKLRVR 130
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+Y+ +I+ L A + + EM G+ PD F+ P++ K+C + + +H
Sbjct: 131 NVYSWAAIIGLKCRIGLCEGALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSRFGRGVH 190
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+K G F+ ++L +MY C LD +
Sbjct: 191 GYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNE 250
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++F+ M E ++P VT+ L+A A + K+ H G L T+++
Sbjct: 251 EAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVHGLELDNILGTSIL 310
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ YCK + A +F +M+ WN
Sbjct: 311 NFYCKVGLIEYAEMIFDRMIEKDVVTWN 338
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 37/219 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF +I + N+++ GY ++ EA + +M +G+ P R + + A+
Sbjct: 222 RKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANM 281
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
I KQ H+ AI GL D+ L +++N Y ++ +
Sbjct: 282 GGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLI 341
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-KCVDESGF 226
+AI + M +EN+K + VTL +++A AR ++L+ K V C+ S
Sbjct: 342 SGYVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHS-L 400
Query: 227 WSHVELKTTLMDAYCKCKFV---SRAWDLFV-KMLFPWN 261
S + L +T +D Y KC + +A+D V K L WN
Sbjct: 401 ESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWN 439
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHA----------QMLRTSLFFDPCA---DYHVRLVFSQISNPT 89
CL + + E KQ HA +L TS+ C + ++F ++
Sbjct: 274 CLSASANMGGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKD 333
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ T N ++ GY + L +A M ++ L D +L + A ++ + K++
Sbjct: 334 VVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQC 393
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL-------------------------DQP---DE 178
I+ L SD L +T I+MY+ C + +P E
Sbjct: 394 YCIRHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGE 453
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E+V PN +T ++ + + K + + SG + ++ TT+M+
Sbjct: 454 ALRLFYEMQLESVPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVFPNLVSWTTMMN 513
Query: 239 A 239
Sbjct: 514 G 514
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 7/179 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSC 135
R F I + N+++ Y L EA ++EM ++ + P+ + + F
Sbjct: 424 RKAFDSIVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLESVPPNVITWNLIILSFLGN 483
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ K++ Q G+ + T++N C +EAI +M+ ++PNA
Sbjct: 484 GQVNEAKEMFLQMQSSGVFPNLVSWTTMMNGLVQNGC---SEEAILFLRKMQESGLRPNA 540
Query: 196 VTLVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+++ L+A A L + +H + S V ++T+L+D Y KC +++A +F
Sbjct: 541 ISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDLNKAEMIF 599
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 37/223 (16%)
Query: 77 HVRLVFSQISNP-TIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKS 134
+ + VF I NP I CN ++ GYT ++ EA LF M L PD + +PS+ K+
Sbjct: 56 YAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKA 115
Query: 135 CAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS--------------------SCW 171
C + + + +H+ +K GL D + ++L+ MY+ +CW
Sbjct: 116 CGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACW 175
Query: 172 -----CLDQP---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
C Q +EA++ F M +P++VT+ +++ AR DL + +HK +
Sbjct: 176 NTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVN 235
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
SGF + L+D Y KC + A ++F +M + WN+
Sbjct: 236 SGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNS 278
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 113/281 (40%), Gaps = 50/281 (17%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPT 89
++ C+ + +L ++IH +++ + D C + + VF Q+ N T
Sbjct: 213 AISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKT 272
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
+ NS++ GY K + M +G+ P S +C A + K +H
Sbjct: 273 VVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHG 332
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------E 178
I+ + D FL+++L+++Y C ++ + +
Sbjct: 333 YIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFD 392
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++F M V+P+A+T +VL A ++ L + +H + E ++ + L+D
Sbjct: 393 ALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLD 452
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
Y KC V A+ +F P + W +M G G V
Sbjct: 453 MYAKCGAVEEAFGVF--KCLPERDLVSWTSMITAYGSHGRV 491
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + T + N ++ GY + +A + EM + PD F S+ +C+ +
Sbjct: 365 IFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAA 424
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD---------- 177
+++H+ ++ L ++ + L++MY+ C CL + D
Sbjct: 425 LEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITA 484
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
EA+++F M NVKP+ VT + +L+A + A
Sbjct: 485 YGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHA 523
>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 885
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 37/217 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++N + + N+++ G+ + + + +M+++GL+P+ + F + +SC+ +
Sbjct: 453 VFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLN 512
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
++ KQ+H+ IK L + F+ LI+MY+ CL
Sbjct: 513 VWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAG 572
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D+ ++A+K +M E +KPN TL + L+ +R L +++H +SG
Sbjct: 573 HSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGD 632
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLF-----PWN 261
V + + L+D Y KC + A +F K LF WN
Sbjct: 633 VFVSSALVDMYGKCGCMEDAEAIF-KGLFSRDTVAWN 668
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 48/258 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFDP------------CA-DYHVRLVFSQISNPTIYTCNSIV 97
+RE K +H+ +R + D C Y VF+ I P I ++I+
Sbjct: 309 GNLREGKALHSLSIRRAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAII 368
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLA 154
G + EA +H M +G+ P++F F S+ + D+Y+ + +H K+G
Sbjct: 369 TGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYE 428
Query: 155 SDSFLHNTLINMY----------------------------SSCWCLDQPDEAIKIFYRM 186
SD+ + N LI MY S + + D+ ++IF +M
Sbjct: 429 SDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQM 488
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+E + PN T V VL + + ++ K+VH + ++ + + T L+D Y K + +
Sbjct: 489 LMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCL 548
Query: 247 SRAWDLFVKM----LFPW 260
A F K+ LF W
Sbjct: 549 EDADVAFNKLTNRDLFTW 566
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 47/205 (22%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVR--------LVFSQISNPTI 90
L CS++ + KQ+HA +++ SL D + + + F++++N +
Sbjct: 504 LRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDL 563
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+T I+ G++ + +A + +M+ +G+ P+ F S C A + +QLHS
Sbjct: 564 FTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSL 623
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
AIK G + D F+ + L++MY C C++ Q +A
Sbjct: 624 AIKSGHSGDVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDTVAWNTIICGYSQHGQGQKA 683
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
++ F M E++ P+ VT + VL A
Sbjct: 684 LEAFRMMLDEDIDPDEVTFIGVLAA 708
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 48/260 (18%)
Query: 50 CSTMRELKQIHAQMLRTSLFFD-----PCADYHVRLVFSQISNPTIY--------TCNSI 96
CS ++ K IH + ++T L D D + + ++++ + + N++
Sbjct: 207 CSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNAL 266
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGL 153
+ GY + + M+ + + ++ K CA+ + K LHS +I+
Sbjct: 267 LNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAY 326
Query: 154 ASDSFLHNTLINMYSSCWC----------LDQPD------------------EAIKIFYR 185
D FL L++MYS C +++PD EA ++F+
Sbjct: 327 ELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHL 386
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M + V+PN + +V++A DL + +H C+ + G+ S + L+ Y K F
Sbjct: 387 MRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYESDNSVGNALITMYMKSGF 446
Query: 246 VSRAWDLFVKM----LFPWN 261
V +F M L WN
Sbjct: 447 VQDGIRVFDTMTNRDLVSWN 466
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 33/170 (19%)
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------- 173
+ + + CA ++ +H IK GL DS L +LIN+Y+ C L
Sbjct: 96 YSGMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMR 155
Query: 174 -----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+ +K + M EN+ PN TL VL A + D++ K
Sbjct: 156 ERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKL 215
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+H ++G + + + L+D Y K + A +F M P N W
Sbjct: 216 IHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGM--PEKNNVSW 263
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 56/275 (20%)
Query: 52 TMRELKQIHAQMLRTS------------LFFDPC---ADYHVRLVFSQISNPTIYTCNSI 96
+RE +++H M++T + ++ C D R +F ++ + + ++
Sbjct: 105 AIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGD--AREMFDEMPQKNVVSWTAM 162
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGL 153
+ Y+ + EA + EM+ P+ F F ++ SC +Q+HS AIK
Sbjct: 163 ISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNY 222
Query: 154 ASDSFLHNTLINMYSSCW----------CLDQPD------------------EAIKIFYR 185
S F+ ++L++MY+ CL + D EA+K+F +
Sbjct: 223 ESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQ 282
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
++IE + N+VT +VLTA + L K+VH V SG +S+V L +L+D Y KC
Sbjct: 283 LQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGN 342
Query: 246 VSRAWDLFVKM----LFPWN----NYGQWAMSATV 272
V A +F M WN Y + M+ V
Sbjct: 343 VCYARRIFDSMPERTCISWNAMLVGYSKHGMAREV 377
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 75/266 (28%)
Query: 72 PCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
P D + + +F Q+ +P + N+++RGY ++ + ++M G+ PD F F
Sbjct: 9 PSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNF 68
Query: 131 LFKSCADIYVE-----------KQLHSQAIKFGLASDSFLHNTLINMYS----------- 168
L K+ + + V ++H +K G +S F+ N LI++Y+
Sbjct: 69 LIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRV 128
Query: 169 ---------------------------SCWCLDQ-PD--------------------EAI 180
+ W DQ P+ EA+
Sbjct: 129 FDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREAL 188
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+++ M + V+P+ VTLV+V++A DL+ VH +DE+GF V L L+D Y
Sbjct: 189 ELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMY 248
Query: 241 CKCKFVSRAWDLFVKM----LFPWNN 262
KC + RAW +F M L WN+
Sbjct: 249 AKCGCMDRAWQVFNSMSRKSLVTWNS 274
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF Q+ + + ++V Y+ EA Y M+ +G+ PD S+ +C
Sbjct: 157 RWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNL 216
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
D+ + +HS + G L N LI+MY+ C C+D+
Sbjct: 217 GDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMI 276
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGF 226
P++A +F RM V P+ VT + VLTA A + R+ + + + G
Sbjct: 277 SACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGI 336
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+ +E +++ + ++ A++L M P N+
Sbjct: 337 EARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSND 372
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 109/288 (37%), Gaps = 78/288 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHV---------------RLVFSQISNPTIY 91
L C T+++L QIHAQ + T +F D + R +F +I P I+
Sbjct: 42 LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIF 101
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI---YVEKQLHSQ 147
N+++R Y +A +FY EM ++ PD FP L K+C++I + + +HS
Sbjct: 102 IANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSH 161
Query: 148 AIKFGLAS-------------------------------DSFLHNTLINMYSSCWCLDQ- 175
K G +S D N +I Y C
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSA 221
Query: 176 -------PD--------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
PD E + +F M E ++PN LVN L+A A
Sbjct: 222 RRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHL 281
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + + + ++ V L T L+D Y KC V RA ++F KM
Sbjct: 282 GAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKM 329
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 39/162 (24%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F + + + + + ++ GY ++ E + +M+ + + P+ + + +CA
Sbjct: 221 ARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAH 280
Query: 138 I-------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------- 174
+ ++E+ + + ++ + L LI+MYS C ++
Sbjct: 281 LGAMEQGQWIERYMERKNVRLTVR----LGTALIDMYSKCGSVERALEVFHKMKEKNVLA 336
Query: 175 ------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q +A+ +F +ME++ VKPN VT + +L A
Sbjct: 337 WSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNA 378
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + ++++ G +A + +M +QG+ P+ F + +C+ +
Sbjct: 325 VFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKL 384
Query: 141 EKQ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
+ HS +GL ++ H ++++Y LDQ IK
Sbjct: 385 VDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIK 429
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------------FFDPCADYHVRLVFSQISNPTIYT 92
L C + L QIHAQ++ + F C R VF NP+
Sbjct: 39 LSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCD--LARSVFDSTPNPSRIL 96
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAI 149
NS++R YT ++EA Y+ M+ +GL PD++ F + K+C ++ H +
Sbjct: 97 WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEID 156
Query: 150 KFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIK 181
+ GL D F+ L++MYS L + P EA+
Sbjct: 157 RRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVD 216
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M++ V+P++V+L+N+ + ++ + +H V F S V L+D Y
Sbjct: 217 FFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYS 274
Query: 242 KCKFVSRAWDLFVKML 257
KC V A +F +M+
Sbjct: 275 KCGDVDVARRVFDQMV 290
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 32/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
F+++S+ I T NS++ GY + A ++++ + + PD + +CA D
Sbjct: 487 TFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLND 546
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ +H +K G SD + N LI+MY+ C L +
Sbjct: 547 LDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIA 606
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
EAI F++M +EN PN+VT V+VL A A R H C+ + GF S
Sbjct: 607 AYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L+D Y KC + + LF +M
Sbjct: 667 NTLVGNSLIDMYAKCGQLXYSEKLFNEM 694
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 57/289 (19%)
Query: 24 INLDNINNNNIN--SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------F 69
+ L N+ N ++ S + A + LEK K+IH L+ +
Sbjct: 320 MKLGNVRINKVSAVSAFLAAAETIDLEKG------KEIHGCALQQRIDSDILVATPLMVM 373
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C + + +F + + ++I+ EA + EM Q + P+R
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------- 170
S+ +CAD+ + K +H +K + SD L++MY+ C
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493
Query: 171 -----WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
W + P AI +FY++ + + P+A T+V V+ A A DL +
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF-----PWN 261
H + + GF S +K L+D Y KC + A LF K F WN
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 49 KCSTMRELKQIHAQMLRTSL----------FFDPCADYHV-RLVFSQISNPTIYTCNSIV 97
K S + + IH + R + C D V R VF Q+ + + +++
Sbjct: 242 KLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMM 301
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
GY + E + +M + + ++ S F + A D+ K++H A++ +
Sbjct: 302 AGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRID 361
Query: 155 SDSFLHNTLINMYSSC----------WCLDQ------------------PDEAIKIFYRM 186
SD + L+ MY+ C W L P+EA+ +F M
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM 421
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ + +KPN VTL+++L A A L+ K +H ++ S + T L+ Y KC F
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFF 481
Query: 247 SRAWDLFVKM----LFPWNN 262
+ A F +M + WN+
Sbjct: 482 TAALTTFNRMSSRDIVTWNS 501
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 39/220 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF----MFPSLFK 133
R VF ++ + N+++ G + EA F+ M + G+ P +FP + K
Sbjct: 183 AREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICK 242
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD----- 177
++I + + +H + +S + N LI++YS C +DQ D
Sbjct: 243 -LSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
E +++F +M++ NV+ N V+ V+ A A DL K +H C +
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359
Query: 226 FWSHVELKTTLMDAYCKCKFVSRA----WDLFVKMLFPWN 261
S + + T LM Y KC +A W L + L W+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWS 399
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
L N++I Y+ Q +EA++++Y M + ++P+ T VL A A +L+
Sbjct: 95 ILWNSMIRAYTRS---KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
H +D G V + L+D Y K + RA ++F KM + WN
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 56/275 (20%)
Query: 52 TMRELKQIHAQMLRTS------------LFFDPC---ADYHVRLVFSQISNPTIYTCNSI 96
+RE +++H M++T + ++ C D R +F ++ + + ++
Sbjct: 77 AIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGD--ARGMFDEMPQRNVVSWTAM 134
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGL 153
+ Y+ + EA + EM+ P+ F F ++ SC +Q+HS AIK
Sbjct: 135 ISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNY 194
Query: 154 ASDSFLHNTLINMYSSCW----------CLDQPD------------------EAIKIFYR 185
S F+ ++L++MY+ CL + D EA+K+F +
Sbjct: 195 ESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQ 254
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
++IE + N+VT +VLTA + L K+VH V SG +S+V L +L+D Y KC
Sbjct: 255 LQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGN 314
Query: 246 VSRAWDLFVKM----LFPWN----NYGQWAMSATV 272
V A +F M WN Y + M+ V
Sbjct: 315 VCYARRIFDSMPERTCISWNAMLVGYSKHGMAREV 349
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 66/247 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF I P + N+++RG+ + A Y MI GL P+ + FP LFKSCA
Sbjct: 34 VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
KQ+H+Q +K+GL D +H +LI+MY+ ++
Sbjct: 94 AQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG 153
Query: 177 -------DEAIKIF-----------------------YRMEIE--------NVKPNAVTL 198
D+A K+F Y+ +E +VKP+ T+
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----V 254
VL+ + ++ +++H +D GF S+++L L+D Y KC + RA LF
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273
Query: 255 KMLFPWN 261
K + WN
Sbjct: 274 KDVISWN 280
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 125/325 (38%), Gaps = 79/325 (24%)
Query: 12 RTPALSSDNSPLINLD--NINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLF 69
R ALSSD +NL I+ + Y F S K +E KQIHAQ+L+ L
Sbjct: 51 RGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLT 110
Query: 70 FD---------------PCADYH-----------------------------VRLVFSQI 85
D D H + +F +I
Sbjct: 111 VDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEI 170
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEK 142
+ + N+++ GY + EA ++EM+ + PD ++ +C ++ + +
Sbjct: 171 PIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGR 230
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------------- 176
Q+HS G S+ L N LI++YS C +++
Sbjct: 231 QIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYIN 290
Query: 177 --DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFWSHVEL 232
EA+ +F M PN VT++++L A A + + +H +D+ G ++ L
Sbjct: 291 HHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSL 350
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKML 257
+T+L+D Y KC + A +F +L
Sbjct: 351 QTSLIDMYAKCGNIEAANQVFDTIL 375
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 45/167 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F + + + N+++ GY N H EA L + EM+ G P+ S+ +CA
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326
Query: 138 --------IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y++K+L G+ +++ L +LI+MY+ C ++
Sbjct: 327 IDIGRWIHVYIDKKLK------GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLS 380
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+ D A + RM+ + ++P+ +T V +L+A + A
Sbjct: 381 SCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHA 427
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 44/271 (16%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISN- 87
+N +S + H+ + L+ CS +RE IHA ++ +L DP V ++N
Sbjct: 24 LNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNL 83
Query: 88 ------------PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
P N+++ + E Y+ M+ QG++ D F L +C
Sbjct: 84 DCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHAC 143
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------- 176
D+ + ++H + +K G + L+N L+ +YS C L +
Sbjct: 144 CKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWN 203
Query: 177 ------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EA+ +F M + V P+ +T+V++++ A+ +DL KR+H + ++
Sbjct: 204 TMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDN 263
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
W L L+D Y KC + A L +
Sbjct: 264 KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSR 294
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F +++ ++ + +++ GY + E+ + +M + +IPD ++ +C
Sbjct: 322 RQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHL 381
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
D + + +H+ + +G+ D FL N L+++Y+ C L DEA++ F ++ + +A
Sbjct: 382 EDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKL---DEALRTFEQLPCK----SA 434
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+ ++L R+ + + + E S T+++AY K + ++++F K
Sbjct: 435 ASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSW----NTMVNAYVKHDLFNESFEIFCK 490
Query: 256 M 256
M
Sbjct: 491 M 491
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 47/165 (28%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R F++I I + N++V Y +L +E+F + +M + PD+ SL SCA
Sbjct: 454 RDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKV 513
Query: 137 ---------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------- 174
++Y+EK + G+ D+ L LI+MY C C++
Sbjct: 514 GALNHGIWVNVYIEKN------EIGI--DAMLGTALIDMYGKCGCVEMAYEIFTQIIEKN 565
Query: 175 ---------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q EAI ++ ME VKP+ VT + +L A
Sbjct: 566 VFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAA 610
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
NT++N Y D +E+ +IF +M+ NVKP+ TL+++L++ A+ L V+
Sbjct: 469 NTMVNAYVK---HDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVY 525
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNNYGQWAMSATVGPQG 276
++++ L T L+D Y KC V A+++F +++ F W AM A +G
Sbjct: 526 IEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWT-----AMMAAYAMEG 580
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E++++F +M ENV P+ V LV VL+A D + VH + G L L+
Sbjct: 351 ESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALL 410
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
D Y KC + A F ++ P + W
Sbjct: 411 DLYAKCGKLDEALRTFEQL--PCKSAASW 437
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 135/304 (44%), Gaps = 60/304 (19%)
Query: 2 AAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHA 61
AA LP + P +S+++P +L +++ I S L++ + ++ IHA
Sbjct: 11 AASLPFSGPSPKPHPNSNSNPK-SLKSLDQKQIISL---------LQRSRHINQVLPIHA 60
Query: 62 QMLRTSLFFDP---------CA-----DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
Q++R DP C+ DY R +F NP +Y +++ G+ + +
Sbjct: 61 QLIRNGHSQDPFMVFELLRSCSKCHAIDYASR-IFQYTHNPNVYLYTALIDGFVSSGNYL 119
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLI 164
EA Y M+ + ++PD ++ S+ K+C + +++HS+A+K G +S+ + ++
Sbjct: 120 EAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIM 179
Query: 165 NMYSSCWCL--------------------------------DQPDEAIKIFYRMEIENVK 192
+Y C L ++ + A++ F M+ ENV+
Sbjct: 180 ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVR 239
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
PN T+V VL+A ++ L + VH + + ++ + L++ Y +C + A +
Sbjct: 240 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 299
Query: 253 FVKM 256
F +M
Sbjct: 300 FDEM 303
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 114/288 (39%), Gaps = 79/288 (27%)
Query: 53 MRELKQIHAQMLR----------TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
M LKQI A LR SL P Y +L F I PT++ N +++ Y++
Sbjct: 1 MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKL-FDFIPKPTVFLYNKLIQAYSS 59
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFL 159
HH+ F Y +M +QG P+ F LF +CA + +Q LH+ +K G D F
Sbjct: 60 HGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFA 119
Query: 160 HNTLINMYSSCWCLD----QPDE------------------------AIKIFYRMEIENV 191
L++MY+ L Q DE A+++F M NV
Sbjct: 120 LTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNV 179
Query: 192 --------------------------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
+PN VTL +VL A A L +R+
Sbjct: 180 TSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEV 239
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
+G++ ++ + L++ Y +C + +AW +F ++ L WN+
Sbjct: 240 YARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNS 287
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 121/304 (39%), Gaps = 84/304 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL--------------FFDPCAD---YHVRLVFS 83
H L L C T++ L+ IHAQM++T L P D Y + VF
Sbjct: 3 HPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAIS-VFE 61
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA------- 136
I P + N++ RG+ + A Y MI GL+P+ + FP L KSCA
Sbjct: 62 TIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFRE 121
Query: 137 ---------------DIYVEKQLHSQAIKFGLASDS------------FLHNTLINMYSS 169
D+YV L S ++ G D+ + LI Y+S
Sbjct: 122 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 181
Query: 170 CWCLDQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNV 201
+ EA+++F M NV+P+ T+V+V
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 241
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKML 257
++A A++ + ++VH +D+ GF S++++ L+D Y KC V A LF K +
Sbjct: 242 VSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDV 301
Query: 258 FPWN 261
WN
Sbjct: 302 ISWN 305
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 33/210 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F +I + + N+++ GY + EA + EM+ + PD S+ +C A
Sbjct: 191 MFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 250
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+HS G S+ + N LI++Y C ++
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 310
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +++ G
Sbjct: 311 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVA 370
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ +T+L+D Y KC + A +F +L
Sbjct: 371 NASSHRTSLIDMYAKCGDIEAAQQVFDSIL 400
>gi|302755786|ref|XP_002961317.1| hypothetical protein SELMODRAFT_61795 [Selaginella moellendorffii]
gi|300172256|gb|EFJ38856.1| hypothetical protein SELMODRAFT_61795 [Selaginella moellendorffii]
Length = 446
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H ++VF+++ + + N+++ + +A ++ M +QG PD F S SC
Sbjct: 39 HAKIVFNRMPARNLASWNALIAACARNDQCQDALEIFYRMSLQGERPDDLTFVSAIDSCG 98
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------ 177
+ K LH Q ++ GL ++ + NTLI MY C LD PD
Sbjct: 99 ILRSLRDGKLLHEQTLEAGLVHNTAVANTLITMYGKCQRLDSAWSVFADIPNPDISSWNI 158
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
AI +R+ +E +KP+ T + ++ + A L KR+ + +S
Sbjct: 159 GIAAIAKGGATASAISFSFRINLEGIKPDGATFIALIDSCASPNSLPDAKRIASWIGDSE 218
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
FWS L+ +D + +C + A +F++
Sbjct: 219 FWSDPRLRDATIDMFGRCDDLDTARAIFLE 248
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 38/179 (21%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSC------------------------W------ 171
K+LH + K G + +F+ N+LI MY SC W
Sbjct: 2 KELHREVHKNGYGAHTFVANSLIQMYGSCHAENGDLDHAKIVFNRMPARNLASWNALIAA 61
Query: 172 CL--DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
C DQ +A++IFYRM ++ +P+ +T V+ + + R LR K +H+ E+G +
Sbjct: 62 CARNDQCQDALEIFYRMSLQGERPDDLTFVSAIDSCGILRSLRDGKLLHEQTLEAGLVHN 121
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQIS 288
+ TL+ Y KC+ + AW +F + P + W +G + +TA IS
Sbjct: 122 TAVANTLITMYGKCQRLDSAWSVFADIPNP--DISSW----NIGIAAIAKGGATASAIS 174
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 48/262 (18%)
Query: 43 CLVSLEKC-STMRELKQIHAQMLRTSLF-FDPCADYHVRL--------------VFSQIS 86
C+ ++ C S+ +LKQIHA +R + +P + H+ +F+QI
Sbjct: 37 CISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQ 96
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA---DIYVEK 142
P I+T N+++RG+ A + +M ++PD FP LFK+ A D+ + +
Sbjct: 97 APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------D 174
+HS ++ G S F+ N+L++MYS L
Sbjct: 157 GIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNG 216
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
P+EA+ ++ M E V+P+ T+V++L+A L +RVH + + G +
Sbjct: 217 MPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASN 276
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC A +F +M
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEM 298
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF +S NS++ G+ + +EA Y EM +G+ PD F SL +C +
Sbjct: 193 VFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGA 252
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQ--------------- 175
+ + +++H +K GL + N L+++YS C D+
Sbjct: 253 LALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVG 312
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWS 228
+EA+K+F +E + +KP+ +T V VL A + L + +E G
Sbjct: 313 LAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILP 372
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+E ++D C+ V A+D M P N
Sbjct: 373 RIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPN 405
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDP--CA---DYHVRL--------VFSQISNPTI 90
L+ C + +L+ QIH+Q+++TS + C+ D + +L + + + +
Sbjct: 480 LKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 539
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ +++ GYT N +A + +M+ +G+ D + +CA + K Q+H+Q
Sbjct: 540 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 599
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A G +SD N L+ +YS C +++ +EA
Sbjct: 600 ACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 659
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F RM E + N T + + A + +++ K+VH + ++G+ S E+ ++
Sbjct: 660 LRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISM 719
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC +S A F+++
Sbjct: 720 YAKCGSISDAKKQFLEL 736
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L + +K ++ +Q+H +L+ SL+F + +FS +S
Sbjct: 278 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDA 337
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
T N+++ G + +A + M + GL PD SL +C+ ++ +QLH+
Sbjct: 338 VTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAY 397
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQPDEA 179
K G AS+ + L+N+Y+ C W LD +
Sbjct: 398 TTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNS 457
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+IF +M+IE + PN T ++L R DL +++H + ++ F + + + L+D
Sbjct: 458 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDM 517
Query: 240 YCKCKFVSRAWDLFVK 255
Y K + AWD+ ++
Sbjct: 518 YAKLGKLDTAWDILIR 533
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 116/276 (42%), Gaps = 52/276 (18%)
Query: 15 ALSSDNSPLIN-LDNINNNNINSQYQAHFCLVSLEKC----STMRELKQIHAQMLRTSLF 69
++S D S N +D++ N I +Q L LE C ++ E +++H+Q+L+
Sbjct: 43 SISEDESFQENGIDSVENCGIRPNHQTLKWL--LEGCLKTNGSLDEGRKLHSQILKLGFD 100
Query: 70 FDPC------------ADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
+ C D L VF ++ TI+T N +++ +++L + F + M
Sbjct: 101 NNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRM 160
Query: 117 IVQGLIPDRFMFPSLFKSCADIYVE----KQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
+ + + P+ F + ++C V +Q+H++ I GL + + N LI++YS
Sbjct: 161 VNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGF 220
Query: 173 LDQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+D+ EAI++F M + + P +VL+A
Sbjct: 221 VDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSA 280
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+ L +++H V + GF S + L+ Y
Sbjct: 281 CKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLY 316
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 45/250 (18%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
++E +QIHAQ + + C + L F Q N++V
Sbjct: 589 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVS 648
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLAS 155
G+ + EA + M +G+ + F F S K+ A++ KQ+H+ K G S
Sbjct: 649 GFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 708
Query: 156 DSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRME 187
++ + N +I+MY+ C + EA+ F +M
Sbjct: 709 ETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMI 768
Query: 188 IENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
NV+PN VTLV VL+A + + + ++ E G E ++D + +
Sbjct: 769 HSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLL 828
Query: 247 SRAWDLFVKM 256
SRA D ++M
Sbjct: 829 SRAKDFILEM 838
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ +++ N +V GY EA YH M+ G+ PD + FP + +SC D
Sbjct: 159 VFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIKPDIYTFPCVLRSCGGAND 218
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---------- 177
K++H I+FG +D N LI MY C C+ Q D
Sbjct: 219 FIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISG 278
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E + +F +M +V P+ +T+ +V++A D R + +H V +G+ +
Sbjct: 279 YFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGND 338
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
V + + L+ Y + A +F
Sbjct: 339 VSVHSLLIQMYASLGYWKEAEKVF 362
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 40/232 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VFS+ + + +++ GY +H +A Y M + G++PD + +CA +
Sbjct: 361 VFSETECRDVVSWTAMISGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQ 420
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------A 179
+ +LH A + GL S + N+LI+MYS C C+D+ E
Sbjct: 421 LDLGMRLHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIILG 480
Query: 180 IKI---------FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
++I F+R N+KPN++TL++VL+A AR L K +H ++
Sbjct: 481 LRINNRSFEALSFFRKMKRNLKPNSITLISVLSACARIGALMCGKEIHAHALKTAMVYEG 540
Query: 231 ELKTTLMDAYCKCKFVSRA---WDLFVKMLFPWN-------NYGQWAMSATV 272
L ++D Y +C + A ++L+ + + WN GQ AM+ +
Sbjct: 541 FLPNAILDMYVRCGKLGLALNQFNLYKEDVAAWNILMRGYAEQGQGAMAVEL 592
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF ++ + N+++ GY E + +M+ + PD S+ +C
Sbjct: 258 RTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELL 317
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--W-----------CLD-------- 174
D + +++H ++ G +D +H+ LI MY+S W C D
Sbjct: 318 GDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMI 377
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
D+A++ + ME+ + P+ +T+ VL+A A L R+H+ + G
Sbjct: 378 SGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLM 437
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF 253
S V + +L+D Y KCK + +A ++F
Sbjct: 438 SFVIVANSLIDMYSKCKCIDKALEVF 463
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF I + + + SI+ G N EA F+ +M + L P+ S+ +CA I
Sbjct: 462 VFHCIQDKNVISWTSIILGLRINNRSFEALSFFRKM-KRNLKPNSITLISVLSACARIGA 520
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
K++H+ A+K + + FL N +++MY C L
Sbjct: 521 LMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLALNQFNLYKEDVAAWNILMRGY 580
Query: 174 ---DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
Q A+++F++M V P+ VT + +L A +R+ + K
Sbjct: 581 AEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRSGMVEEAK 625
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
F N L+ Y+ D EA+ +++RM +KP+ T VL + A D K +
Sbjct: 169 FSWNVLVGGYAKAGFFD---EALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEI 225
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
H V GF + V L+ Y KC V A +F KML WN
Sbjct: 226 HCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVFDKMLQRDRISWN 273
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 27/203 (13%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCADY---------------HVRLVFSQISNPTIYT 92
EKC M++LK+ HAQ+L L D A H +F QI +PTI
Sbjct: 13 EKCRHMKQLKEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICI 72
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAI 149
CN++++ + K Y +M+ GL PD + P + K+CA + ++ + H Q++
Sbjct: 73 CNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSV 132
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
K G D F+ NTLI MYSS A IF M AV+ +++ A+
Sbjct: 133 KLGFWFDIFVGNTLIAMYSS---FGNVRAARCIFDEMPWH----TAVSWTVMISGYAKVG 185
Query: 210 DLRTVKRV--HKCVDESGFWSHV 230
D+ T + + + + G W +
Sbjct: 186 DVETARMLFDEAPMKDRGIWGSI 208
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI 149
I+ N+++ Y++ A + EM + M S + D+ + L +A
Sbjct: 140 IFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMI-SGYAKVGDVETARMLFDEAP 198
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
D + ++I+ Y C E +++F M+ ++P+ LV++L A A
Sbjct: 199 ----MKDRGIWGSIISGYVQNNCFK---EGLQMFRLMQSTGLEPDEAILVSILCACAHLG 251
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ VH+ +D+ G V L T L+D Y KC + A LF M
Sbjct: 252 AMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGM 298
>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 44/248 (17%)
Query: 56 LKQIHAQMLRT--------SLFFDP---CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
+K I A ML++ S D C D + R VF +S I T NS++
Sbjct: 84 IKTIQAHMLKSGFPAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKH 143
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQAIKFGL-ASDSFL 159
EA Y MI ++PD + S+FK+ +D+ +EK+ H A+ GL S+ F+
Sbjct: 144 RRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFV 203
Query: 160 HNTLINMY-------SSCWCLDQPDE---------------------AIKIFYRMEIENV 191
+ L++MY + LD+ +E A+K F M +E V
Sbjct: 204 GSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKV 263
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
+PN T +VL + +D+ K +H + +SGF S + +T+L+ Y +C V +
Sbjct: 264 QPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLR 323
Query: 252 LFVKMLFP 259
+F + +P
Sbjct: 324 VFKCIEYP 331
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+LV ++ + +++ GY+ K EA + M+V+ + P+ + + S+ SC
Sbjct: 219 EAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCG 278
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPDE----- 178
DI K +H +K G S +L+ MY C C++ P++
Sbjct: 279 NLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTS 338
Query: 179 -------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
A+ F +M +++KPN+ TL + L + +++H V + G
Sbjct: 339 LISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYG 398
Query: 226 FWSHVELKTTLMDAYCKC 243
F + L+D Y KC
Sbjct: 399 FDRDKYAGSGLIDLYGKC 416
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF I P + S++ G A + + +M+ + P+ F S + C+++ +
Sbjct: 324 VFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAM 383
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+Q+H K+G D + + LI++Y C C D
Sbjct: 384 FEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYS 443
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F RM ++PN VT+++VL A
Sbjct: 444 YAQNGFGREALDLFERMINLGLQPNDVTVLSVLLA 478
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+ VF+ + I N+++ G+ L E F+ M G PD F F S+F +CA +
Sbjct: 364 KQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASL 423
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ QLH+ IK AS+ F+ N L++MY+ L +
Sbjct: 424 HYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAII 483
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
DEA +F RM V P+ V+L ++++A A ++L+ ++ H + + G
Sbjct: 484 VGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLD 543
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y KC V A D+F M
Sbjct: 544 TSTCAGSSLIDMYVKCGVVLAARDVFYSM 572
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIK 150
N+I+ GY + + EAF + M+ G++PD S+ +CA++ K Q H +K
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVK 539
Query: 151 FGLASDSFLHNTLINMYSSC---------------------------WCLDQPDEAIKIF 183
GL + + ++LI+MY C + + +EAI +F
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLF 599
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK-TTLMDAYCK 242
+++ +KP VT +L A L +++H V + GF S E+ +L+ Y
Sbjct: 600 QEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMN 659
Query: 243 CKFVSRAWDLFVKMLFP 259
+ + LF ++ +P
Sbjct: 660 SQRFVDSETLFSELQYP 676
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 55/270 (20%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCA-----DYHV--------RLVFSQISNPTI 90
+ C+ ++ELK Q H +++ L CA D +V R VF + + +
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNV 577
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+ N+++ GYT +L EA + E+ + GL P F L C + + +Q+H Q
Sbjct: 578 VSVNALIAGYTMGHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQ 636
Query: 148 AIKFG-LASDSFLHNTLINMYSS---------------------CWCL--------DQPD 177
+K+G L+S + +L+ +Y + W + +
Sbjct: 637 VMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHE 696
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A++ + M +N+ P+ +VL A A L+ + +H + +GF ++L+
Sbjct: 697 KALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLI 756
Query: 238 DAYCKCKFVSRAWDLFVKM-----LFPWNN 262
D Y KC V + +F +M + WN+
Sbjct: 757 DMYAKCGDVKGSLQVFREMPRRNNVISWNS 786
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F+QI NP + N ++ G+ + EA F+ E+ GL R S+ + A +
Sbjct: 263 RKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASL 322
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
+ +H+QA K GL + ++ + L+NMY+ C +D
Sbjct: 323 SMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAML 382
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
E ++ F M+ +P+ T ++ +A A L ++H + ++ F
Sbjct: 383 GGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFA 442
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S++ + L+D Y K + A F M
Sbjct: 443 SNLFVANALVDMYAKSGALKEARKQFELM 471
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 81 VFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+FS++ P + +++ GY +N H +A FY M ++PD+ F S+ ++CA +
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMS 728
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
+++HS G D ++LI+MY+ C +
Sbjct: 729 SLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMI 788
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+EA++IF +ME +++ P+ VT + VL+A + A + ++V
Sbjct: 789 VGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKV 838
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 34/143 (23%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---------- 191
K +HS+++K G+ L N ++++Y C D A K F R+E ++V
Sbjct: 61 KVIHSKSLKIGVGLKGLLGNVIVDLYVKC---GNVDFAQKAFSRLEKKDVFAWNSVLSMY 117
Query: 192 ---------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
+PN T VL+A + +D+ ++VH V ++GF
Sbjct: 118 LDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRS 177
Query: 231 ELKTTLMDAYCKCKFVSRAWDLF 253
+ L+D Y KC+++ A +F
Sbjct: 178 FCQGGLIDMYAKCRYLRDARLVF 200
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 37/223 (16%)
Query: 77 HVRLVFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKS 134
H + VF + NP I N ++ GYT ++ EA + +++ L PD + +PS+ K+
Sbjct: 56 HAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKA 115
Query: 135 CADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ-PD------ 177
C +Y + K +H+ +K GL D + ++L+ MY+ C W ++ P+
Sbjct: 116 CGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACW 175
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
EA++ F M +PN+VT+ +++ AR DL +H+ +
Sbjct: 176 NTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELIN 235
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
SGF + + L+D Y KC + A ++F +M + WN+
Sbjct: 236 SGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNS 278
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 50/279 (17%)
Query: 46 SLEKCSTMRELK---QIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPT 89
++ C+ + +L +IH +++ + D C + + VF Q+ T
Sbjct: 213 AISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKT 272
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
+ NS++ GY K + M +G+ P SL C A + K +H
Sbjct: 273 VVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG 332
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------E 178
I+ + SD F++++L+++Y C ++ + E
Sbjct: 333 YTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFE 392
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ +F M V+P+A+T +VLTA ++ L + +H + E ++ + L+D
Sbjct: 393 ALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLD 452
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
Y KC V A+ +F P + W +M G G
Sbjct: 453 MYAKCGAVDEAFSVF--KCLPKRDLVSWTSMITAYGSHG 489
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 54/270 (20%)
Query: 46 SLEKCSTMREL---KQIHAQMLRT-----SLFFD--------PCADYHVRL-VFSQISNP 88
+LE C++ + L +Q+HA L+T S+F D C ++ + VF ++S
Sbjct: 52 ALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSER 111
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
TI+T N+++ + + EA Y EM V G+ D F FP + K+C + ++H
Sbjct: 112 TIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIH 171
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCL--------------DQPD-------------- 177
A+K G F+ N LI MY+ C L D P
Sbjct: 172 GVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGE 231
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ +F RM+ V+ N T V+ L A ++ + +H + +S ++ V +
Sbjct: 232 SLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNA 291
Query: 236 LMDAYCKCKFVSRAWDLFVKMLF----PWN 261
L+ Y C + A +F MLF WN
Sbjct: 292 LIAMYANCGQMEDAERVFKSMLFKDCVSWN 321
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C ++ F + + + +I+ GY H +A ++ ++ + D M S+
Sbjct: 401 CCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSIL 460
Query: 133 KSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------ 177
+C+ + EK ++H +K GLA D + N ++N+Y +D
Sbjct: 461 LACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIV 519
Query: 178 ----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
EA+++F + N++P+ +TLV+VL A A L+ K +H +
Sbjct: 520 SWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFL 579
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
GF+ + +L+D Y +C + A ++F
Sbjct: 580 IRKGFFLEGLIANSLVDMYARCGTMENARNIF 611
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
NSI+ + + EA + M G+ + + F S ++C I + + +H+ +K
Sbjct: 220 NSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILK 279
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
+D ++ N LI MY++C ++ + +AI
Sbjct: 280 SNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINH 339
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M+ KP+ V+++N++ A R+ +L VH + G S++ + +L+D Y K
Sbjct: 340 FQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGK 399
Query: 243 C---KFVSRAWDLF-VKMLFPW 260
C K++ A++ K L W
Sbjct: 400 CCCVKYMGSAFEYMPEKDLISW 421
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 46/263 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L ++ S + +HAQ ++ L + C+ + VF+ + I
Sbjct: 316 LSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNI 375
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
N+++ G+ L E F+ M G PD F F S+F +CA ++ QLH+
Sbjct: 376 VLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTV 435
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
IK S+ F+ N L++MY+ L + DEA
Sbjct: 436 MIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEA 495
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+F RM V P+ V+L ++++A A ++ + ++ H + + G + ++L+D
Sbjct: 496 FFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDM 555
Query: 240 YCKCKFVSRAWDLFVKMLFPWNN 262
Y KC V A D+F M P+ N
Sbjct: 556 YVKCGVVLAARDVFYSM--PYRN 576
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 31/197 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIK 150
N+I+ GY + + EAF + M+ G++PD S+ +CA++ K Q H +K
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVK 539
Query: 151 FGLASDSFLHNTLINMYSSC---------------------------WCLDQPDEAIKIF 183
GL + + ++LI+MY C + + +EAI +F
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHLEEAIHLF 599
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK-TTLMDAYCK 242
+++ +KP VT +L A L +++H V + GF S E+ +L+ Y
Sbjct: 600 QEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMN 659
Query: 243 CKFVSRAWDLFVKMLFP 259
+ + + LF ++ +P
Sbjct: 660 SQRFADSETLFSELQYP 676
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 114/270 (42%), Gaps = 55/270 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCA-----DYHV--------RLVFSQISNPTI 90
+ C+ ++E KQ H +++ L CA D +V R VF + +
Sbjct: 518 VSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNV 577
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+ N+++ GYT +L EA + E+ + GL P F L C + + +Q+H Q
Sbjct: 578 VSINALIAGYTMSHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQ 636
Query: 148 AIKFG-LASDSFLHNTLINMYSS---------------------CWCL--------DQPD 177
+K+G L+S + +L+ MY + W + +
Sbjct: 637 VMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHE 696
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A++ + M +N+ P+ T +VL A A L+T + VH + +GF ++L+
Sbjct: 697 KALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLI 756
Query: 238 DAYCKCKFVSRAWDLFVKM-----LFPWNN 262
D Y KC V + +F +M + WN+
Sbjct: 757 DMYAKCGDVKGSLQVFHEMPRRNSVISWNS 786
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 31/207 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F+QI NP + N ++ G+ + EA F+ E+ GL R S+ + A
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------- 175
+ + +H+QAIK GL + ++ + L+NMY+ C +D
Sbjct: 322 LSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
E ++ F M+ +P+ T ++ +A A L ++H + ++ F
Sbjct: 382 LGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKF 441
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
S++ + L+D Y K + A F
Sbjct: 442 TSNLFVANALVDMYAKSGALKEARKQF 468
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 81 VFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-- 137
+FS++ P + +++ GY +N H +A FY M ++PD+ F S+ ++CA
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMS 728
Query: 138 -IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
+ +++HS G D ++LI+MY+ C +
Sbjct: 729 SLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMI 788
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+EA++IF +ME +++ P+ VT + VL+A + A + ++V
Sbjct: 789 VGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKV 838
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 34/168 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
FS++ ++ NS++ Y + L + M G+ P+ F F + +C+ D
Sbjct: 98 AFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQD 157
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
I KQ+H K G SF LI+MY+ C L
Sbjct: 158 INYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAG 217
Query: 176 ------PDEAIKIFYRMEIENVKPNA---VTLVNVLTARARARDLRTV 214
P EA+K+F +M+ P+ VT++N A R D R +
Sbjct: 218 YVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKL 265
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 34/134 (25%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---------- 191
K +HS+++K G+ L N ++++Y C D A K F R+E ++V
Sbjct: 61 KVIHSKSLKIGVGLKGLLGNVIVDLYVKC---GNVDFAQKAFSRLEKKDVFAWNSVLSMY 117
Query: 192 ---------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
+PN T VL+A + +D+ K+VH V + GF
Sbjct: 118 LDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRS 177
Query: 231 ELKTTLMDAYCKCK 244
+ L+D Y KC+
Sbjct: 178 FCQGGLIDMYAKCR 191
>gi|302785407|ref|XP_002974475.1| hypothetical protein SELMODRAFT_100938 [Selaginella moellendorffii]
gi|300158073|gb|EFJ24697.1| hypothetical protein SELMODRAFT_100938 [Selaginella moellendorffii]
Length = 382
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H R F +I N ++ + NSI+ Y EA + M +G+ P+R F + +C+
Sbjct: 10 HARQAFDRIENKSVISWNSIITAYAQNGHSKEALGMFCAMDPEGVKPNRVTFLAALDACS 69
Query: 137 DIYVE------KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------- 176
I E +++H + I+ GL S+ + N+L+NMY+ C DQ
Sbjct: 70 -IETEQSSNLGREIHFRIIESGLESEETIANSLVNMYAKCGRFDQALRLFQKFLPGTVVS 128
Query: 177 --------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+I++F M++E + P+ +T ++VL A AR RDL + +H
Sbjct: 129 WTAMITANAHWGHGRSSIRLFGEMDLEGIAPDEITCISVLDACARERDLDWGREIHSRAK 188
Query: 223 ESGF-WSHVELKTTLMDAYCKCKFVSRAWDLF 253
GF S + + L+ Y +C + A F
Sbjct: 189 AMGFDRSSSVVGSALVSFYGRCGNLKEAKQAF 220
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 44 LVSLEKCSTMREL-----KQIHAQMLRTSL------------FFDPCADYHVRL-VFSQI 85
L +L+ CS E ++IH +++ + L + C + L +F +
Sbjct: 62 LAALDACSIETEQSSNLGREIHFRIIESGLESEETIANSLVNMYAKCGRFDQALRLFQKF 121
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEK 142
T+ + +++ + + + EM ++G+ PD S+ +CA D+ +
Sbjct: 122 LPGTVVSWTAMITANAHWGHGRSSIRLFGEMDLEGIAPDEITCISVLDACARERDLDWGR 181
Query: 143 QLHSQAIKFGL-ASDSFLHNTLINMYSSCWCLDQP------------------------- 176
++HS+A G S S + + L++ Y C L +
Sbjct: 182 EIHSRAKAMGFDRSSSVVGSALVSFYGRCGNLKEAKQAFSMAARRDVISWTAMVSAFAHH 241
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA++IF+ M ++ V PN+VTL++VL A + + L+T +
Sbjct: 242 GWGEEALEIFHAMILDGVLPNSVTLLSVLAACSHSGLLKTARE 284
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT--VKRVH 218
N++I Y+ EA+ +F M+ E VKPN VT + L A + + + + +H
Sbjct: 27 NSIITAYAQN---GHSKEALGMFCAMDPEGVKPNRVTFLAALDACSIETEQSSNLGREIH 83
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ ESG S + +L++ Y KC +A LF K L
Sbjct: 84 FRIIESGLESEETIANSLVNMYAKCGRFDQALRLFQKFL 122
>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+F+ R +F ++ + +++ GY + N + A+ +HEM QG P+ F
Sbjct: 55 YFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTL 114
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------- 170
S+ KSC ++ V +H +K G+ ++ N L+NMY++C
Sbjct: 115 SSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIK 174
Query: 171 ------WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
W L +K++ +M +EN + + A A + T K+
Sbjct: 175 VKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQ 234
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+H V + GF S++ + +++D YC+C ++S A F +M L WN
Sbjct: 235 IHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWN 283
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 51/250 (20%)
Query: 57 KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
KQIHA +++ + D++ R F ++ + + T N+++
Sbjct: 233 KQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISELERS 292
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ EA L + QG +P+ + F SL +CA+I +QLH + + G + L
Sbjct: 293 D-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELA 351
Query: 161 NTLINMYSSCWCLDQPD-------------------------------EAIKIFYRMEIE 189
N LI+MY+ C D PD EA+++F +M
Sbjct: 352 NALIDMYAKCG--DIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSS 409
Query: 190 NVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++P+ + + VL+A R + +K + E G ++ ++D + +
Sbjct: 410 GIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGE 469
Query: 249 AWDLFVKMLF 258
A++L +M F
Sbjct: 470 AYELVERMPF 479
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 29/239 (12%)
Query: 51 STMRELKQIHAQMLRTSLFFDP----------CA----DYHVRLVFSQISNPTIYTCNSI 96
+T+ +L QIHAQ+ +LF + C+ DY + +F +P ++ N++
Sbjct: 51 NTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALS-IFRCFDHPNLFVFNAL 109
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGL 153
+RG + + + M+ + PDR P + KS A D+ + + LH +K GL
Sbjct: 110 IRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL 169
Query: 154 ASDSFLHNTLINMYSSCWCL-------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
DSF+ +L++MY L D+ + K + V+PN +T+V+ L A
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACT 229
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+ +R+H + +GF + + T L+D Y KC + A +FV K L W+
Sbjct: 230 KIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWS 288
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ VF+ + I N+++ G+ L E F+ M G PD F F S+F +CA
Sbjct: 363 AKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACAS 422
Query: 138 IY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
++ QLH+ IK AS+ F+ N L++MY+ L +
Sbjct: 423 LHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAI 482
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
DEA +F RM V P+ V+L ++++A A ++L+ ++ H + + G
Sbjct: 483 IVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGL 542
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y KC V A D+F M
Sbjct: 543 DTSTCAGSSLIDMYVKCGVVLAARDVFYSM 572
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIK 150
N+I+ GY + + EAF + M+ G++PD S+ +CA++ K Q H +K
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVK 539
Query: 151 FGLASDSFLHNTLINMYSSC---------------------------WCLDQPDEAIKIF 183
GL + + ++LI+MY C + + +EAI +F
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLF 599
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK-TTLMDAYCK 242
+++ +KP VT +L A L +++H V + GF S E+ +L+ Y
Sbjct: 600 QEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMN 659
Query: 243 CKFVSRAWDLFVKMLFP 259
+ + LF ++ +P
Sbjct: 660 SQRFVDSETLFSELQYP 676
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 55/270 (20%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCA-----DYHV--------RLVFSQISNPTI 90
+ C+ ++ELK Q H +++ L CA D +V R VF + + +
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNV 577
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+ N+++ GYT +L EA + E+ + GL P F L C + + +Q+H Q
Sbjct: 578 VSVNALIAGYTMGHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQ 636
Query: 148 AIKFG-LASDSFLHNTLINMYSS---------------------CWCL--------DQPD 177
+K+G L+S + +L+ +Y + W + +
Sbjct: 637 VMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHE 696
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A++ + M +N+ P+ +VL A A L+ + +H + +GF ++L+
Sbjct: 697 KALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLI 756
Query: 238 DAYCKCKFVSRAWDLFVKM-----LFPWNN 262
D Y KC V + +F +M + WN+
Sbjct: 757 DMYAKCGDVKGSLQVFREMPRRNNVISWNS 786
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F+QI NP + N ++ G+ + EA F+ E+ GL R S+ + A
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------- 175
+ + +H+QA K GL + ++ + L+NMY+ C +D
Sbjct: 322 LSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
E ++ F M+ +P+ T ++ +A A L ++H + ++ F
Sbjct: 382 LGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKF 441
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S++ + L+D Y K + A F M
Sbjct: 442 ASNLFVANALVDMYAKSGALKEARKQFELM 471
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 81 VFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+FS++ P + +++ GY +N H +A FY M ++PD+ F S+ ++CA +
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMS 728
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
+++HS G D ++LI+MY+ C +
Sbjct: 729 SLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMI 788
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+EA++IF +ME +++ P+ VT + VL+A + A + ++V
Sbjct: 789 VGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKV 838
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 34/143 (23%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---------- 191
K +HS+++K G+ L N ++++Y C D A K F R+E ++V
Sbjct: 61 KVIHSKSLKIGVGLKGLLGNVIVDLYVKC---GNVDFAQKAFSRLEKKDVFAWNSVLSMY 117
Query: 192 ---------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
+PN T VL+A + +D+ ++VH V ++GF
Sbjct: 118 LDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRS 177
Query: 231 ELKTTLMDAYCKCKFVSRAWDLF 253
+ L+D Y KC+++ A +F
Sbjct: 178 FCQGGLIDMYAKCRYLRDARLVF 200
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 114/288 (39%), Gaps = 79/288 (27%)
Query: 53 MRELKQIHAQMLR----------TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
M LKQI A LR SL P Y +L F I PT++ N +++ Y++
Sbjct: 1 MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKL-FDFIPKPTVFLYNKLIQAYSS 59
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFL 159
HH+ F Y +M +QG P+ F LF +CA + +Q LH+ +K G D F
Sbjct: 60 HGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFA 119
Query: 160 HNTLINMYSSCWCLD----QPDE------------------------AIKIFYRMEIENV 191
L++MY+ L Q DE A+++F M NV
Sbjct: 120 LTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNV 179
Query: 192 --------------------------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
+PN VTL +VL A A L +R+
Sbjct: 180 TSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEV 239
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
+G++ ++ + L++ Y +C + +AW +F ++ L WN+
Sbjct: 240 YARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNS 287
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 45/234 (19%)
Query: 62 QMLRTSLFF-DPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG 120
QM L F DP YH R VF+ N+I+ G+ L + F FY M G
Sbjct: 25 QMEEAVLVFRDP---YHERNVFAY---------NAIIAGFVANGLAADGFQFYKRMRSVG 72
Query: 121 LIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------- 170
++PD+F FP + ++C + +++H K GL + F+ + L+N Y
Sbjct: 73 VMPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVF 132
Query: 171 ----------WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
W + ++A+ +F RM E + + T ++L+ D+
Sbjct: 133 EELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDIN 192
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ +H V + G+ S V + L+D Y KCK A +F K LF WN+
Sbjct: 193 NGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNS 246
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
++F I+ +++ NSI+ + + H + +M+ ++PD ++ +C A
Sbjct: 231 MIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLA 290
Query: 137 DIYVEKQLHSQAIKFGL-----ASDSFLHNTLINMYSSCWCLDQPD-------------- 177
+ +++H I GL D L+N +++MY+ C C+ D
Sbjct: 291 ALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASW 350
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD- 222
EA+ +F+RM +KP+ VT V VL+A + A + + ++
Sbjct: 351 NIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMEL 410
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
E G +E T ++D + + A+DL
Sbjct: 411 EFGVIPTIEHYTCIIDMLGRAGHLGEAYDL 440
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 100/261 (38%), Gaps = 55/261 (21%)
Query: 59 IHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118
+ + ++ T L D D VF ++ + N+++ GYT ++A + + M
Sbjct: 111 VGSALVNTYLKVDGTED--AEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGE 168
Query: 119 QGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC----- 170
+G+ RF S+ S DI + +H K G +S + N LI+MY C
Sbjct: 169 EGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTED 228
Query: 171 ---------------W---------CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
W C D D +++F +M V P+ +T+ VL A +
Sbjct: 229 ALMIFEMINEKDLFSWNSIISAHEQC-DDHDGTLRLFGKMLGSRVLPDVITITAVLPACS 287
Query: 207 RARDLRTVKRVHKCVDESGFWSH-----VELKTTLMDAYCKCKFVSRA------------ 249
L + +H + +G + V L +MD Y KC + A
Sbjct: 288 HLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDV 347
Query: 250 --WDLFVKMLFPWNNYGQWAM 268
W++ + M + + YG A+
Sbjct: 348 ASWNIMI-MGYAMHGYGTEAL 367
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 34/245 (13%)
Query: 40 AHFCLVSLEKC-STMRELKQIHAQMLRTSLFFDPCAD--------------YHVRLVFSQ 84
+H L +LE C + +E QIH Q++ + L P A H +F
Sbjct: 58 SHPILRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEG 117
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYV 140
+ P + CN+I+R Y N N + A FY+E +V+ + P+ + FP L K C I
Sbjct: 118 LEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGD 177
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+++H++ +KFG D F+ N+LI+MYS C + +A +F I ++ VT +
Sbjct: 178 GEKIHARILKFGFELDLFVRNSLIHMYSVC---GRIGDARAMFEVCSISDL----VTWNS 230
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF-- 258
++ + ++ + + + + E +S +++ Y ++ A DLF KM F
Sbjct: 231 MIDGYVKNGEIGAARELFEEMPERDLFSW----NSMIAGYVGNGDMTAAEDLFNKMPFRD 286
Query: 259 --PWN 261
WN
Sbjct: 287 IVSWN 291
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ +++ NS++ GY A +++M + ++ M + +
Sbjct: 244 ARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDG-YAQVQN 302
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ + +L + + S N ++ +Y + DE +++F +M E + PN T
Sbjct: 303 MEIACELFNWMPYRNVVS----WNIMLALYVR---IKDYDECLRMFDKMMGETM-PNEAT 354
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
LV+VLTA A L K +H + + V L T L+ Y KC + A D+F KM
Sbjct: 355 LVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKM 414
Query: 257 ----LFPWNN 262
+ WN+
Sbjct: 415 SNRSVVSWNS 424
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 45/248 (18%)
Query: 53 MRELKQIHAQMLRTS----------LFFD-----PCADYHVRLVFSQISNPTIYTCNSIV 97
M + ++HA++L+T L P + + R +F I+ P + N+I+
Sbjct: 1 MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS 157
R + + + L + +M + G+ PD F FP + K+CA + LHS K G SD
Sbjct: 61 RAHADSSPSFSLSL-FSKMTMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDV 119
Query: 158 FLHNTLINMYSSCWCLD--------QPD--------------------EAIKIFYRME-I 188
++ N LI+ Y C LD P+ EA+ +F RM+ +
Sbjct: 120 YVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLV 179
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
VKP+ V +++V++A + DL K + + +G V L T L+D + +C +
Sbjct: 180 GTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEE 239
Query: 249 AWDLFVKM 256
+ +F +M
Sbjct: 240 SMRVFDEM 247
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 17/202 (8%)
Query: 69 FFDPCA--DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDR 125
F+ C D+ ++ F ++ + + +S++ + +EA + M + G + PD
Sbjct: 128 FYGCCGFLDFALK-AFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDE 186
Query: 126 FMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182
+ S+ + D+ + K + + GL L L++M+S C C+ +E++++
Sbjct: 187 VIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCI---EESMRV 243
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M NV L+N L R+ + R+ + GF T ++ A
Sbjct: 244 FDEMGERNV-LTWTALINGLAVHGRSAE---ALRMFYEMRNHGFQPDHVTFTGVLVACSH 299
Query: 243 CKFVSRAWDLFVKMLFPWNNYG 264
VS W +F + N YG
Sbjct: 300 GGLVSEGWHVFESIR---NEYG 318
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 56 LKQIHAQMLRTSLFFDPCADYHVRL-------------------VFSQISNPTIYTCNSI 96
LKQIHAQ+L ++ + +L VFSQI NP + N +
Sbjct: 32 LKQIHAQILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQL 91
Query: 97 VRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
+R + + + YH + + DRF FPSL K+ + + ++H A K G
Sbjct: 92 LRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLG 151
Query: 153 LASDSFLHNTLINMYSSC---------------------------WCLD-QPDEAIKIFY 184
D F+ LI MY+SC +C + D+A+++F
Sbjct: 152 FVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFE 211
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M ++KP++V L VL+A A +L + +H+ V ++G+ L+T L++ Y C
Sbjct: 212 DMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCG 271
Query: 245 FVSRAWDLF 253
+ A ++
Sbjct: 272 AMDLARKIY 280
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F Q+ + ++++ GY + EA + EM+ + +PD+ S+ +C+
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366
Query: 138 IYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ Q +H+ + G ++N LI+MY+ C L
Sbjct: 367 VGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 426
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESG 225
D AIK+F RM+ N++PN VT + VL A A + +++ ++E G
Sbjct: 427 INAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHG 486
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
E ++D YC+ F+ +A +L M F N
Sbjct: 487 ISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPN 522
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 64/252 (25%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
RL+F ++ +P N I+ GY + +A + +M + PD + ++ +C
Sbjct: 175 ARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGH 234
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS------------------------- 169
++ + +H G A DS L LINMY++
Sbjct: 235 AGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAM 294
Query: 170 --------------------------CWCL--------DQPDEAIKIFYRMEIENVKPNA 195
CW DQP EA+K+F M + P+
Sbjct: 295 LSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQ 354
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+T+++V++A + L +H VD SGF + + L+D Y KC + +A ++F
Sbjct: 355 ITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFEN 414
Query: 256 MLFPWNNYGQWA 267
M P N W+
Sbjct: 415 M--PRKNVISWS 424
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 45/248 (18%)
Query: 53 MRELKQIHAQMLRTS----------LFFD-----PCADYHVRLVFSQISNPTIYTCNSIV 97
M + ++HA++L+T L P + + R +F I+ P + N+I+
Sbjct: 1 MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS 157
R + + + L + +M + G+ PD F FP + K+CA + LHS K G SD
Sbjct: 61 RAHADSSPSFSLSL-FSKMAMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDV 119
Query: 158 FLHNTLINMYSSCWCLD--------QPD--------------------EAIKIFYRME-I 188
++ N LI+ Y C LD P+ EA+ +F RM+ +
Sbjct: 120 YVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLV 179
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
VKP+ V +++V++A + DL K + + +G V L T L+D + +C +
Sbjct: 180 GTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEE 239
Query: 249 AWDLFVKM 256
+ +F +M
Sbjct: 240 SMRVFDEM 247
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 17/202 (8%)
Query: 69 FFDPCA--DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDR 125
F+ C D+ ++ VF ++ + + +S++ + +EA + M + G + PD
Sbjct: 128 FYGCCGFLDFALK-VFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDE 186
Query: 126 FMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182
+ S+ + D+ + K + + GL L L++M+S C C+ +E++++
Sbjct: 187 VIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCI---EESMRV 243
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M NV L+N L R+ + R+ + GF T ++ A
Sbjct: 244 FDEMGERNV-LTWTALINGLAVHGRSAE---ALRMFYEMRNHGFQPDHVTFTGVLVACSH 299
Query: 243 CKFVSRAWDLFVKMLFPWNNYG 264
VS W +F + N YG
Sbjct: 300 GGLVSEGWHVFESIR---NEYG 318
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 22/236 (9%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPC--------------ADYHVRLVFSQ 84
AH + + ++++ LK +HA +LR L D +Y R +F Q
Sbjct: 9 SAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHR-IFHQ 67
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK-- 142
P I+ N+++ G + E+ YH M +GL PD F FP L K+CA + K
Sbjct: 68 TKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLG 127
Query: 143 -QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201
+LH +K G SD+F++ +L+++Y C +D A K+F + +NV +++
Sbjct: 128 IKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDN---AFKVFDDIPEKNVAA-WTAIISG 183
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ R+ + R V + + ++++ Y A DLF KML
Sbjct: 184 YIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKML 239
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P EA+ +F++M E +P+ +V VL A AR L +D + F + L T
Sbjct: 228 PKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTA 287
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN-NYGQWAMSATVGPQ-GLVGR 280
L+D Y KC + AW++F M + WN AMS V GL G+
Sbjct: 288 LIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQ 338
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 129/323 (39%), Gaps = 95/323 (29%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTI 90
L C +++ +I +QM+ T D A DY ++ +F +I N
Sbjct: 36 LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQ-IFDRIENSNG 94
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQ 147
+ N+++R Y N +A L Y M+ + PD + +P + ++CA +E K++H
Sbjct: 95 FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDH 154
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------WC-----------LDQP 176
+K G SD ++ NTLINMY+ C W + Q
Sbjct: 155 VLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQV 214
Query: 177 DEAIKIFYRME---------------------------IE----NVKPNAVTLVNVLTAR 205
EA K+F M+ IE ++ + V +V+VL+A
Sbjct: 215 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 274
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLM----DAYCKCKFVSRAWDLFVKM----L 257
A ++T K +H V G S+V L+ L+ D Y KC V A ++F M +
Sbjct: 275 AHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGV 334
Query: 258 FPWNNYGQWAMSATVGPQGLVGR 280
WN A+ + GLV R
Sbjct: 335 SSWN-----ALIIGLAVNGLVER 352
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+++ + + ++++ GY ++ EA + + EM G+ D + S+ +CA + +
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSS----CWCLDQPDEAIKIFYRMEIENVKP 193
K +H I+ G+ S L N LI+MYS C C++ A+++F ME + V
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVEN---ALEVFNGMEEKGVSS 336
Query: 194 -NAVTL---VNVLTARA 206
NA+ + VN L R+
Sbjct: 337 WNALIIGLAVNGLVERS 353
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 130/299 (43%), Gaps = 74/299 (24%)
Query: 44 LVSLEKCSTMRELKQIHAQMLR-------------------TSLFFDPC--ADYHVRLVF 82
L+ L C ++RE+KQIHA +++ TSL AD L +
Sbjct: 30 LLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWY 89
Query: 83 SQI------SNPTIYTCNSIVRGY-TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+ NP +Y N+I++ T+ N F Y +M++ GL PD + P L K+C
Sbjct: 90 ASSLANFCHQNP-VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKAC 148
Query: 136 AD--IYVEK-QLHSQAIKFGLASDSFLHNTLINMYSS--------------------CWC 172
+ ++E Q+H+ +IK GL+S+ F+ NTL+ Y+ W
Sbjct: 149 SQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWT 208
Query: 173 --------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ P EAI F+RM N + +TLV VL+A ++ D K++ +D
Sbjct: 209 TLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHH 265
Query: 225 GFWSH--VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGL 277
F H V L L+D Y KC A LF VK L WN +M + + QGL
Sbjct: 266 LFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWN-----SMISGLAHQGL 319
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 56 LKQIHAQMLRTSLFFD---PCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL 111
L +H+ + + D C H+ R +F + + + NS++ G ++ L EA
Sbjct: 266 LFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALH 325
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
+ M GL PD + SCA D+ + K +HS K + +D ++ N L++MY+
Sbjct: 326 MFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYA 385
Query: 169 SCWCLDQ----------------------------PDEAIKIFYRMEIENVKPNAVTLVN 200
C +DQ D A+ IF M V+P+ VTLV
Sbjct: 386 KCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVG 445
Query: 201 VLTARARARDLRTVKR 216
VL+A + A L +R
Sbjct: 446 VLSACSHAGLLEEGRR 461
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 55/251 (21%)
Query: 55 ELKQIHAQMLRTSLF-----------FDPCADY--HVRLVFSQISNPTIYTCNSIVRGYT 101
E QIHA ++T L F + + V VF Q + + + ++++ Y+
Sbjct: 156 EALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYS 215
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK--FGLASD 156
EA + M DR + +C+ D + K++ + F + SD
Sbjct: 216 KMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSD 272
Query: 157 SFLHNTLINMYSSCWCLDQP-------------------------------DEAIKIFYR 185
FL N L++MY C QP EA+ +F R
Sbjct: 273 VFLGNALLDMYLKC---GQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M+ +KP++VTLV VL + A DL K VH +D++ + + L+D Y KC
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGS 389
Query: 246 VSRAWDLFVKM 256
+ +A+ +F M
Sbjct: 390 IDQAFMVFQAM 400
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 118/258 (45%), Gaps = 47/258 (18%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTS------------LFFDPCAD-YHVRLVFSQISNPTI 90
L+ C +LKQ IH+ ++R +F+ + + R VF ++ +
Sbjct: 44 LQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNV 103
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEK--QLHSQ 147
+ + + GY + +A L + +M G+ ++F + S+ ++C + +E+ Q+H
Sbjct: 104 VSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGC 163
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
K + F+ + L++++S C ++ D++
Sbjct: 164 IQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDS 223
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++FY M E V P+ TL +VL A +RA +L V ++H + + GF SH++L +L+DA
Sbjct: 224 FRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDA 283
Query: 240 YCKCKFVSRAWDLFVKML 257
Y K + + A L+ ML
Sbjct: 284 YAKSEGMKSASALYKSML 301
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
++ + + + +I+ GY K + EA + +M + D F ++ CADI
Sbjct: 296 LYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIA 355
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ +Q+H+ AIK+ + D N L++MY+ + ++A + FY M+ +NV +
Sbjct: 356 SLSIGRQIHALAIKYKPSYDVATGNALVDMYAKS---GEIEDATRAFYEMKEKNV----I 408
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +++T + ++K ++ G + +L+ A W+ F M
Sbjct: 409 SWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNM 468
Query: 257 LFPWN 261
+ +N
Sbjct: 469 ITKYN 473
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
F ++ + + S++ GY HEA Y +M +GL P+ F SL +C+ +
Sbjct: 398 AFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHSGL 457
Query: 141 EKQ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ ++ K+ + + ++ +I++++ Q +EA + +M N+KPN+
Sbjct: 458 TGEGWECFNNMITKYNILPRAEHYSCMIDLFARG---GQLEEAYNMICKM---NIKPNSS 511
Query: 197 TLVNVLTA 204
+L A
Sbjct: 512 LWGAILGA 519
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 135/304 (44%), Gaps = 60/304 (19%)
Query: 2 AAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHA 61
AA LP + P +S+++P +L +++ I S L++ + ++ IHA
Sbjct: 4 AASLPFSGPSPKPHPNSNSNPK-SLKSLDQKQIISL---------LQRSKHINQVLPIHA 53
Query: 62 QMLRTSLFFDP---------CA-----DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
Q++R DP C+ DY R +F NP +Y +++ G+ + +
Sbjct: 54 QLIRNGHSQDPFMVFELLRSCSKCHAIDYASR-IFQYTHNPNVYLYTALIDGFVSSGNYF 112
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLI 164
+A Y M+ ++PD ++ S+ K+C + +++HS+A+K GL+S+ + ++
Sbjct: 113 DAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIM 172
Query: 165 NMYSSCWCL--------------------------------DQPDEAIKIFYRMEIENVK 192
+Y C L ++ + A++ F M+ ENV+
Sbjct: 173 ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR 232
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
PN T+V VL+A ++ L + VH + + ++ + L++ Y +C + A +
Sbjct: 233 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 292
Query: 253 FVKM 256
F +M
Sbjct: 293 FDEM 296
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 90/314 (28%)
Query: 47 LEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRL-----VFSQISNP 88
+E+C +RELK+ H Q+L+ T L + Y+ VF I NP
Sbjct: 25 IEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNP 84
Query: 89 TIYTCNSIVRGY----TNKNLHH-EAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYV 140
+ N ++R Y + + H +A + Y +M + ++P+ FP L K C D
Sbjct: 85 DLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGAT 144
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
+ +H+Q IKFG D ++ N+LI++Y + L
Sbjct: 145 GQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLR 204
Query: 177 ----DEAIKIFYRMEIEN----------------------------------VKPNAVTL 198
D A+ +F +M N VKP+ +T+
Sbjct: 205 NGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITI 264
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+VL+A A+ + K VH + +G V + T L++ Y KC V +A+++F +M
Sbjct: 265 ASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEM-- 322
Query: 259 PWNNYGQWAMSATV 272
P + W + +V
Sbjct: 323 PEKDASAWTVMISV 336
>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
Length = 903
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 39/239 (16%)
Query: 57 KQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
+++ +LR L + D V VFS++ + +I+ YT A +H M
Sbjct: 62 EELGNHLLRLYLKCESLGD--VEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRM 119
Query: 117 IVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+G+ D F ++ K+CA D+ + +H+ ++ GL S L N L+++Y SC C+
Sbjct: 120 QQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCV 179
Query: 174 DQP---------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
D A+++F RM++E V+P +TLV L+ A
Sbjct: 180 ASAMLLFERMERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCA 239
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ R R +H V ESG + + T L AY + + +A ++F + + WN
Sbjct: 240 KIRQARA---IHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWN 295
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 52/281 (18%)
Query: 50 CSTMRELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSI 96
CS++R + IHA L L + C R +F I + + N++
Sbjct: 336 CSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAV-SWNTM 394
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-------IYVEKQLHSQAI 149
+ G + K A + M ++G+ P R + +L ++ A + ++LHS+ +
Sbjct: 395 IAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIV 454
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQP-------------------------------DE 178
G AS+ + ++ MY+SC +D+
Sbjct: 455 SCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKR 514
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ F RM++ V PN +T V VL A A A L VH + SG S+V + T L
Sbjct: 515 ALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALAS 574
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
Y +C + A ++F K+ + AM A GL G
Sbjct: 575 MYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAG 615
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 106/250 (42%), Gaps = 44/250 (17%)
Query: 44 LVSLEKCSTMRELKQIHA-----QMLRTSLFFDPCADYHVRL--------VFSQISNPTI 90
+++L C+ +R+ + IH+ + +T + A + RL VF + + +
Sbjct: 232 VITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDV 291
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
+ N+++ Y EA L + M+ +G+ P + + C+ + + +H+ A++
Sbjct: 292 VSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALE 351
Query: 151 FGLASDSFLHNTLINMYSSCWCLD---------------------------QPDEAIKIF 183
GL D L N L++MY+ C + Q A+++F
Sbjct: 352 KGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVSWNTMIAGSSQKGQMKRALELF 411
Query: 184 YRMEIENVKPNAVTLVNVLTARA----RARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
RM++E + P T +N+L A A AR + +++H + G+ S + T ++
Sbjct: 412 QRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKM 471
Query: 240 YCKCKFVSRA 249
Y C + A
Sbjct: 472 YASCGAIDEA 481
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 91/265 (34%), Gaps = 49/265 (18%)
Query: 44 LVSLEKCSTMRELKQ---IHAQMLRTSL------------FFDPCADYHVRLVFSQISNP 88
L L+ C+ + +L Q IHA ++ + L + C ++ +
Sbjct: 132 LAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER 191
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
+ + N+ + A + M ++G+ P R CA I + +HS
Sbjct: 192 DLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIV 251
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+ GL + L + Y+ LDQ EA
Sbjct: 252 RESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAA 311
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F RM E + P+ VTLVN T LR + +H C E G + L L+D Y
Sbjct: 312 LLFARMLHEGIPPSKVTLVNASTG---CSSLRFGRMIHACALEKGLDRDIVLGNALLDMY 368
Query: 241 CKCKFVSRAWDLFVKM---LFPWNN 262
+C A LF + WN
Sbjct: 369 TRCGSPEEARHLFEGIPGNAVSWNT 393
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 53/273 (19%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLR----------TSLFFDPCADYHVRLVFSQI----- 85
H LV LE CS+ + KQ+ AQ++R + L F Y L +++
Sbjct: 34 HQSLVLLENCSSRNQFKQVLAQIMRFNLIGVTFPMSRLIFFSAITYPENLDLAKLLFLDF 93
Query: 86 -SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL 144
NP ++ N+++ ++ +E F Y MI + PDR F L K+ + + KQ+
Sbjct: 94 TPNPNVFVYNTMISAVSSSK--NECFGLYSSMIRYRVSPDRQTFLHLMKASSFLSEVKQI 151
Query: 145 HSQAIKFG-LASDSFLHNTLINMYSSCWCLD----------QPD---------------- 177
H I G L+ ++L N+L+ Y L QPD
Sbjct: 152 HCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGF 211
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--FWSHVELK 233
EA++++Y+M + ++P+ TL+ +L D+R K VH ++ G + S++ L+
Sbjct: 212 GLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILR 271
Query: 234 TTLMDAYCKCK---FVSRAWD-LFVKMLFPWNN 262
L+D Y KCK RA+D L K + WN
Sbjct: 272 NALLDMYFKCKESGLAKRAFDALKKKDMRSWNT 304
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 34/206 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAF--LFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
VF Q+ + + NS++ Y+ K A LFY +IV+ + PDR SL A
Sbjct: 321 VFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANN 380
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
++ + +H I+ L D+FL + LI+MY C +++
Sbjct: 381 GELSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMI 440
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GF 226
+A+++F RM+ E+V PN VTL+ VLTA + + + V + E GF
Sbjct: 441 TGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGF 500
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDL 252
E +L+D C+ + A D+
Sbjct: 501 HPETEHYGSLVDLLCRAGRLEEAKDI 526
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 161 NTLINMYSSCWCLDQPDEAIK-IFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVH 218
N+L+ YS C DQ A++ +FY M I E VKP+ VT+V++++ A +L + VH
Sbjct: 334 NSLLFCYSKKGC-DQ--RAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 390
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF-----------VKML--FPWNNYGQ 265
+ L + L+D YCKC + RA+ +F M+ F ++ YGQ
Sbjct: 391 GLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQ 450
Query: 266 WAM 268
A+
Sbjct: 451 QAL 453
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF + +P+ + NS++ + +AF + M +QGL PDR F ++ C D
Sbjct: 59 VFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGD 118
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ K LH ++ GL + + +LI MY C C+
Sbjct: 119 LSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMT 178
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D+ EA+++F+RM V PN +T ++A A + K +H V E GF S
Sbjct: 179 YVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESD 238
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN 261
V + +++ Y KC + A ++F +M P WN
Sbjct: 239 VVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWN 274
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F + + I SI+ Y +A M ++GL+ + F + +CA
Sbjct: 457 EARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACA 516
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
+ K +H+ AI+ G A+ + N LINMY+ C CL++ D
Sbjct: 517 SLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQCGKNLVSWNTI 576
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+++F M++E +K + V+ V VL + A + R ++H + E+G
Sbjct: 577 AAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASEGR---KIHNILLETGM 633
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNNYGQWAMSATVGPQGL 277
S + T L++ Y K + A +F +M F WN AM A GL
Sbjct: 634 ESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWN-----AMIAGKAEHGL 683
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 39/239 (16%)
Query: 63 MLRTSLF--FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
M+ TSL + C R VF +++ + + S++ Y + EA +H M
Sbjct: 139 MVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPS 198
Query: 120 GLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G++P+R + + +CA + K +HSQ ++ G SD + ++NMY C L+
Sbjct: 199 GVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDA 258
Query: 177 D----------------------------EAIKIFYRMEIE-NVKPNAVTLVNVLTARAR 207
EA+ F RM+++ + P+ VT + +L A +
Sbjct: 259 REVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSS 318
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
L + +H+C+ + G+ +H+ + +M Y C + A F M+ WN
Sbjct: 319 PATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNT 377
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
+M + K IH+Q+L + C R VF ++ +P + N+IV
Sbjct: 219 SMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVA 278
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLA 154
T EA ++ M +QG I PD+ F ++ +C A + + LH ++ G
Sbjct: 279 ACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYD 338
Query: 155 SDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRM 186
+ + N ++ MYSSC +D DEA+ +F RM
Sbjct: 339 THLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRM 398
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E + P+ T ++++ AR ++ K + + + ESG V L + L++ + + V
Sbjct: 399 LAEGITPDKFTFISIIDGTAR---MQEAKILSELMVESGVELDVFLVSALINMHSRYGNV 455
Query: 247 SRAWDLFVKM 256
A LF M
Sbjct: 456 REARSLFDDM 465
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 31/164 (18%)
Query: 124 DRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-------- 172
+R F +L CA I + +HS+ D + N I+MY C C
Sbjct: 1 ERGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVF 60
Query: 173 --LDQPDEA------------------IKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
LD P + +IF RM+++ + P+ +T V VL + DL
Sbjct: 61 QSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLS 120
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K +H V E+G +V + T+L+ Y KC V A +F K+
Sbjct: 121 RGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKL 164
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 124/311 (39%), Gaps = 86/311 (27%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCAD---------------YHVRLVFSQISNP 88
L SLE C +M ++KQ HA ++ T L P + +F QI P
Sbjct: 19 LFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKP 78
Query: 89 TIYTCNSIVRGYT--NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
++ N++++ + + H+ +F + V G +P+R+ F +FK+C + + +Q
Sbjct: 79 DVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQ 138
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC-----------WCLDQP---------------- 176
+ AIK GL S+ F+ N +I MY++ W LDQ
Sbjct: 139 IRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGE 198
Query: 177 --------------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F+ M PN TL + L A
Sbjct: 199 IGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAA 258
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF-----VKM-LF 258
A L + +H +D+S + L +L+D Y KC + A +F +K+ ++
Sbjct: 259 CANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVW 318
Query: 259 PWNNY-GQWAM 268
PWN G +AM
Sbjct: 319 PWNAMIGGYAM 329
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 45/252 (17%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYH-------------VRLVFSQ-ISNPTIYTCNS 95
C T +KQI AQ++ +L H V +F+ I P ++ NS
Sbjct: 20 CRTQIHVKQIQAQIIIHNLQSHTTIAEHLITASQSHNLLNYVSPLFTHLIPKPHVFIFNS 79
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEKQ-LHSQAIKFG 152
++R +++ ++ + Y M ++P+ F FP LFKS +D +V+ Q +++ IK G
Sbjct: 80 LIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFPFLFKSLSDSHDFVQSQCVYTHVIKLG 139
Query: 153 LASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFY 184
+D +++N+L+++Y+S CL+ + ++A+ +F
Sbjct: 140 YVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFE 199
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+M+ V PN VT+VN L+A A + + + V +G+ V L T L+D Y KC
Sbjct: 200 QMQYGGVVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCG 259
Query: 245 FVSRAWDLFVKM 256
V +F M
Sbjct: 260 RVEEGLKVFCDM 271
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 33/213 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R +F ++ + + ++ GY N +++A L + +M G++P+R + +CA
Sbjct: 164 RQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASS 223
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
I + + + G D L LI+MY C +++
Sbjct: 224 CAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVI 283
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES--G 225
+EA+ F RME++ V+ + VTLV VL+A + + + + + + + G
Sbjct: 284 KGLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKGRFIFSMLVDGKYG 343
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
F +V+ ++D + + A+D+ M F
Sbjct: 344 FLPNVKHYACMVDLLARAGQLQEAFDIIKCMPF 376
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 37/223 (16%)
Query: 77 HVRLVFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKS 134
H + VF + NP I N ++ GYT ++ EA + +++ L PD + +PS+FK+
Sbjct: 56 HAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKA 115
Query: 135 CADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQPDE------ 178
C ++ + K +H+ IK GL D + ++L+ MY C W ++ E
Sbjct: 116 CGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACW 175
Query: 179 ---------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
A++ F M +PN+VT+ +++ AR DL +H+ +
Sbjct: 176 NTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELIN 235
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
SGF + + L+D Y KC + A ++F +M + WN+
Sbjct: 236 SGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNS 278
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 50/279 (17%)
Query: 46 SLEKCSTMRELK---QIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPT 89
++ C+ + +L +IH +++ + D C + + +F Q+ T
Sbjct: 213 AISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKT 272
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
+ NS++ GY K + M +G+ P SL C A + K +H
Sbjct: 273 VVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG 332
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------E 178
I+ + D F++++L+++Y C ++ + E
Sbjct: 333 YTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFE 392
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ +F M V+ +A+T +VLTA ++ L K +H + E ++ + L+D
Sbjct: 393 ALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLD 452
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
Y KC V A+ +F P + W +M G G
Sbjct: 453 MYAKCGAVDEAFSVF--KCLPKRDLVSWTSMITAYGSHG 489
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 124/329 (37%), Gaps = 80/329 (24%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL-----FFDPCADYHVRL----------- 80
Q Q H EKC +M +L+Q H+Q++R L P ++ R
Sbjct: 19 QVQMHVEPFHFEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALK 78
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNL--HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+F I P + N+I++G+ + L + L Y M+ ++P+ F FPSL +C I
Sbjct: 79 LFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI 138
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------------- 176
Q+H+ KFG + S N+LI+MY + L++
Sbjct: 139 QHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGY 198
Query: 177 ------DEAIKIFYRMEIEN-----------VKPNAVTLVNVLTARARARD--------- 210
DEA IF M +N V+ N L R +A +
Sbjct: 199 SKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVA 258
Query: 211 ------------LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
L K +H+ + +G +L T ++D YCKC + +A +F +
Sbjct: 259 TTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPL 318
Query: 259 PWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
P W + +G + G A Q+
Sbjct: 319 PCRWISSW--NCMIGGLAMHGNGEAAIQL 345
>gi|6041788|gb|AAF02108.1|AC009755_1 hypothetical protein [Arabidopsis thaliana]
Length = 332
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 32/201 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIK 150
NSI+ GY K +A + + M+ G+ PD+F + ++ +CA++ + KQ+H+Q IK
Sbjct: 1 NSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIK 60
Query: 151 FGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKI 182
L SD ++ +TL++MYS C L + +EAI++
Sbjct: 61 KELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQL 120
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F RM +EN+KPN VT +++L A A + + ++ + + G + + ++D
Sbjct: 121 FERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILG 180
Query: 242 KCKFVSRAWDLFVKMLFPWNN 262
K V RA +L +M F ++
Sbjct: 181 KSGKVKRALELIREMPFEADD 201
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHAQ+++ L + C D H RL+F + T N+++ GY +
Sbjct: 52 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 111
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
EA + MI++ + P+ F S+ ++CA
Sbjct: 112 GKGEEAIQLFERMILENIKPNHVTFISILRACA 144
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF + +P+ + NS++ + +AF + M +QGL PDR F ++ C D
Sbjct: 59 VFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGD 118
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ K LH ++ GL + + +LI MY C C+
Sbjct: 119 LSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMT 178
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D+ EA+++F+RM V PN +T ++A A + K +H V E GF S
Sbjct: 179 YVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESD 238
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN 261
V + +++ Y KC + A ++F +M P WN
Sbjct: 239 VVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWN 274
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 47/256 (18%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F + + I SI+ Y +A M ++GL+ + F + +CA
Sbjct: 457 EARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACA 516
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
+ K +HS AI+ G A+ + N LINMY+ C CL++ D
Sbjct: 517 SLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQCGKNLVSWNTI 576
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+++F M++E +K + V+ V VL + A + ++H + E+G
Sbjct: 577 AAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASE---GSKIHNILLETGM 633
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNNYGQWAMSATVGPQGLVGRHS 282
S + T L++ Y K + A +F +M F WN AM A GL R +
Sbjct: 634 ESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWN-----AMIAGKAEHGL-SREA 687
Query: 283 TA----HQISGPCPKK 294
Q+ G P K
Sbjct: 688 IQMFQRMQLEGVAPDK 703
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 39/239 (16%)
Query: 63 MLRTSLF--FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
M+ TSL + C R VF +++ + + S++ Y + EA +H M
Sbjct: 139 MVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPS 198
Query: 120 GLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G++P+R + + +CA + K +HSQ ++ G SD + ++NMY C L+
Sbjct: 199 GVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDA 258
Query: 177 D----------------------------EAIKIFYRMEIE-NVKPNAVTLVNVLTARAR 207
EA+ F RM+++ P+ VT + +L A +
Sbjct: 259 REVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSS 318
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
L + +++C+ + G+ +H+ + +M Y C + A F M+ WN
Sbjct: 319 PATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNT 377
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 82/212 (38%), Gaps = 31/212 (14%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE 141
FS + + N+I+ G+ EA + M+ +G+ PD+F F S+ A +
Sbjct: 364 FSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQEA 423
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSS--------------------CWCL-------- 173
K L ++ G+ D FL + LINM+S W
Sbjct: 424 KILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQH 483
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
D+A+ M +E + N TLV L A A L K +H E GF + +
Sbjct: 484 GSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVG 543
Query: 234 TTLMDAYCKCKFVSRAWDLF---VKMLFPWNN 262
L++ Y KC + A +F K L WN
Sbjct: 544 NALINMYAKCGCLEEADLVFHQCGKNLVSWNT 575
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 48/250 (19%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
+M + K IH+Q+L + C R VF ++ +P + N+IV
Sbjct: 219 SMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVA 278
Query: 99 GYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLA 154
T EA ++ M +Q G PD+ F ++ +C A + + L+ ++ G
Sbjct: 279 ACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYD 338
Query: 155 SDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRM 186
+ + N ++ MYSSC +D DEA+ +F RM
Sbjct: 339 THLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRM 398
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E + P+ T ++++ AR ++ K + + + ESG V L + L++ + + V
Sbjct: 399 LAEGITPDKFTFISIIDGTAR---MQEAKILSELMVESGVELDVFLVSALINMHSRYGNV 455
Query: 247 SRAWDLFVKM 256
A LF M
Sbjct: 456 REARSLFDDM 465
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 124 DRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-------- 172
DR F +L CA I + +HS+ D + N I+MY C C
Sbjct: 1 DRGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVF 60
Query: 173 --LDQPDEA------------------IKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
LD P + +IF RM+++ + P+ +T V VL DL
Sbjct: 61 QSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLS 120
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K +H V E+G +V + T+L+ Y KC V A +F K+
Sbjct: 121 RGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKL 164
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 47/273 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R +F I+NP + N+I++ + +A LFY M+ + + F ++ K+CA
Sbjct: 69 YTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACA 128
Query: 137 DI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSS--------------------CW-- 171
DI + + +HS + G SDSF+ LI Y+ W
Sbjct: 129 DISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNS 188
Query: 172 ---CLDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
DQ EA+ +FYRM V+ ++ T V+VL+A +++ L VH + +
Sbjct: 189 MISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNS 248
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA- 284
F +V L T+L++ Y +C VS+A ++F +M N A +A + G+ G A
Sbjct: 249 FDVNVVLGTSLINMYTRCGNVSKAREVFDEM----NERNVVAWTAMISGYGMHGYGREAI 304
Query: 285 -----------HQISGPCPKKAHKLFFFSMLKK 306
Q G P+ H + ML +
Sbjct: 305 ELFRLMRIHGMRQDYGLVPRVEHHVCMVDMLGR 337
>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
gi|238005588|gb|ACR33829.1| unknown [Zea mays]
gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 105/259 (40%), Gaps = 51/259 (19%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD---------------PCADYHVRLVFSQIS 86
+ L C+ REL + +H ++R +L D AD + S S
Sbjct: 125 IVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVFAESHGS 184
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD----IYVEK 142
+ T+ + S+V GY EA + MI +G++P+ S F C + +
Sbjct: 185 SRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLIS-FLPCLQGQEWLDAGE 243
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------- 177
+H I+ G ++ L N LI MY C +
Sbjct: 244 MVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHA 303
Query: 178 ---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
EAIK F RM E V + VTLV+VL+A AR+ L+T K VH+ G + +
Sbjct: 304 DVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTDARIGN 363
Query: 235 TLMDAYCKCKFVSRAWDLF 253
L+D Y KC ++ A ++F
Sbjct: 364 VLVDMYAKCGEIASARNVF 382
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 52 TMRELKQIHAQML----------RTSLF--FDPCADYHVRLVFSQISNPTIYTCNSIVRG 99
++R L IHA+ + TSL P + + R VF Y N+++R
Sbjct: 33 SLRALLPIHARAIVLGVSANPAFATSLLAGVAPASLAYARRVFDATPVRDAYMWNTLLRA 92
Query: 100 YTNKNLHHEA--FLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
+++ L H A Y M G+ PD + +P + +CA ++++ + +H ++F LA
Sbjct: 93 HSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFALA 152
Query: 155 SDSFLHNTLINMYSSCWCLDQPD------------------------------EAIKIFY 184
D F+H+ LI MY + + EA+ +F
Sbjct: 153 GDGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFG 212
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M E V PN +TL++ L L + VH V GF +++ L L+ Y KC
Sbjct: 213 TMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCG 272
Query: 245 FVSRAWDLFVKM----LFPWNN 262
+ A LF M L WN
Sbjct: 273 SIPMAQTLFEGMPARSLASWNT 294
>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Glycine max]
Length = 828
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 47/257 (18%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSI 96
CST+R L Q+HA ++ T L DP A + RLVF +P + +
Sbjct: 11 CSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMFGVL 70
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDR---FMFPSLFKS---CADIYVEKQLHSQAIK 150
++ Y +L + YH I +G + F++PS+ K+ + V +++H + +K
Sbjct: 71 IKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRIVK 130
Query: 151 FGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKI 182
GL +D + +L+ MY CL +P E +++
Sbjct: 131 TGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEM 190
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
M E V P++VT+++V A + LR K VH V L+ +L+ Y +
Sbjct: 191 LRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQ 250
Query: 243 CKFVSRAWDLFVKMLFP 259
C ++ A +F + P
Sbjct: 251 CSYLRGAKGMFESVSDP 267
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
I N ++ + N+++ Y + L+ EA + + M+ +GL+PD F S +CA +
Sbjct: 366 IGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFG 425
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+Q+H K G A D F+ N+L++MYS C +D
Sbjct: 426 QQIHGHVTKRGFA-DEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQN 484
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EA+K+F M + N VT ++ + A + + L K +H + SG + +
Sbjct: 485 GISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYID 544
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHST 283
T L+D Y KC + A +F M P + W AM A G G + +T
Sbjct: 545 TALVDMYAKCGDLKTAQGVFNSM--PEKSVVSWSAMIAAYGIHGQITAATT 593
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 49/238 (20%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+++H ++++T L D + R VF +I + + +S+V Y
Sbjct: 122 RKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVEN 181
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLH 160
E M+ +G+ PD S+ ++C + + K +H I+ +A D+ L
Sbjct: 182 GRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLR 241
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
N+LI MY C L +EAI F +M+ V+
Sbjct: 242 NSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVE 301
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCV---DESGFWSHVELKTTLMDAYCKCKFVS 247
NAVT+++VL AR L+ K VH + + G + ++L LMD Y C +S
Sbjct: 302 VNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDG--ADLDLGPALMDFYAACWKIS 357
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F +I +I T N ++ G++ + EA + EM + + F S ++C++
Sbjct: 462 IFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGY 521
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ K +H + + G+ D ++ L++MY+ C L
Sbjct: 522 LLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAA 581
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q A +F +M ++KPN VT +N+L+A A + K + + G +
Sbjct: 582 YGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPN 641
Query: 230 VELKTTLMDAYCKCKFVSRAWDL 252
E +++D +SRA D+
Sbjct: 642 AEHFASIVD------LLSRAGDI 658
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 44/243 (18%)
Query: 58 QIHAQMLRTSLFFDP-CADYHVRL------------VFSQISNPTIYTCNSIVRGYTNKN 104
Q+H ++ FDP A+ V + +F+ + + + T N ++ G+
Sbjct: 94 QLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNG 153
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHN 161
EA L + EMI G+ PD F S S A + K++H ++ G+A D FL +
Sbjct: 154 FMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKS 213
Query: 162 TLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKP 193
LI++Y C + ++A++IF + E + P
Sbjct: 214 ALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSP 273
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
NAVTL +VL A A L K +H + + G + + +MD Y KC + A+ +F
Sbjct: 274 NAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIF 333
Query: 254 VKM 256
+M
Sbjct: 334 RRM 336
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 45/277 (16%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPTI 90
L S+ + +++++ K+IH +LR + D C D + +F Q +N I
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
C +I+ GY L+++A + ++ + + P+ S+ +CA + + K+LH+
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+K GL + + +++MY+ C LD +P EA
Sbjct: 301 ILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEA 360
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I +F +M E + + V++ L+A A L K +H + + F S V ++ L+D
Sbjct: 361 IDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDM 420
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
Y KC +S A +F M+ N ++ A G G
Sbjct: 421 YGKCGNLSVARCVF-DMMREKNEVSWNSIIAAYGSHG 456
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D L N ++N + C +P+ A+K+F M KPN++T +VL+ A
Sbjct: 37 DCVLWNVMLNGFVKC---GEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGN 93
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
++H V GF + L+ Y K +S A LF M P N W
Sbjct: 94 QLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTM--PDTNVVTW 142
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 123/267 (46%), Gaps = 54/267 (20%)
Query: 47 LEKCST---MRELKQIHAQMLRTSL------------FFDPC--ADYHVRLVFSQISNPT 89
L+ C++ + E K IH Q++++ + + C A+Y + VF +I
Sbjct: 198 LKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK-VFGEIPERD 256
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ + +++ G+ + + +++M+ +G P+ + F S+ +SC+ D+ + KQ+H+
Sbjct: 257 VVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 315
Query: 147 QAIKFGLASDSFLHNTLINMYSS--------------------CWCL--------DQPDE 178
Q +K L + F+ L++MY+ W + Q ++
Sbjct: 316 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEK 375
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+K F +M+ E VKPN TL + L+ +R L + +++H ++G + + + L+D
Sbjct: 376 AVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVD 435
Query: 239 AYCKCKFVSRAWDLFVKML----FPWN 261
Y KC V A +F ++ WN
Sbjct: 436 MYAKCGCVEDAEVVFDGLVSRDTVSWN 462
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 34/201 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N+++ G+ + + +++V+G P+ + F S+ K+CA D+ K +H Q IK
Sbjct: 160 NNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIK 219
Query: 151 FGLASDSFLHNTLINMYSSC---------------------------WCLDQPDEAIKIF 183
G+ DS L N+L+N+Y+ C + + ++IF
Sbjct: 220 SGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIF 279
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+M E PN T +++L + + D+ K+VH + ++ + + T L+D Y K
Sbjct: 280 NQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKN 339
Query: 244 KFVSRAWDLFVKM----LFPW 260
+F+ A +F ++ LF W
Sbjct: 340 RFLEDAETIFNRLIKRDLFAW 360
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP-------------- 176
Y+ K++ + IK G+ DS L ++L+N+Y C L + P
Sbjct: 6 YILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSA 65
Query: 177 ------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
EA+++FY M ++ N ++++A A D + +H CV + GF S +
Sbjct: 66 NSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDI 125
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ + Y K + V W F M+
Sbjct: 126 LISNAFVTMYMKTQSVENGWQFFKAMMIE 154
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 35/229 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + TI + SI+ Y + L+ +A + EM +G+ PD + S+ +CA
Sbjct: 353 VFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 412
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + +HS IK G+ S+ + N LINMY+ C +++
Sbjct: 413 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P+EA+++F M+ + KP+ +T+ VL A A L + +H + G++S
Sbjct: 473 YSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSD 531
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQGL 277
+ + L+D Y KC + A LF + P + W M A G G
Sbjct: 532 LHVACALVDMYAKCGLLVLAQLLFD--MIPKKDLISWTVMIAGYGMHGF 578
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 51/267 (19%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSL-------------FFDPCADYHVRLVFSQISNPT 89
C +L K ++E K++H +L+ +F +F ++S P
Sbjct: 204 CFAALGK---VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD 260
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHS 146
+ + NS++ G + +M++ G+ D S+ +CA+I + + LH
Sbjct: 261 VVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHG 320
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------------------- 178
+K + + NTL++MYS C L+ E
Sbjct: 321 FGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSD 380
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
AI +F M+ + V+P+ T+ +++ A A + L + VH V ++G S++ + L++
Sbjct: 381 AIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALIN 440
Query: 239 AYCKCKFVSRAWDLF----VKMLFPWN 261
Y KC V A +F VK + WN
Sbjct: 441 MYAKCGSVEEARLVFSKIPVKDIVSWN 467
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 33/212 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVFS+I I + N+++ GY+ L +EA + +M Q PD + +CA
Sbjct: 450 EARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACA 508
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------- 173
+ +++H ++ G SD + L++MY+ C L
Sbjct: 509 GLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTV 568
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV-KRVHKCVDES 224
+EAI F M I ++P+ + +L A + + L K + +E
Sbjct: 569 MIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNEC 628
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +E ++D + +S+A+ M
Sbjct: 629 GVEPKLEHYACVVDLLARMGNLSKAYKFIESM 660
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 128 FPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------- 177
+ S+ + CA+ + K++HS I G++ D L L+ MY +C L Q
Sbjct: 97 YCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIM 156
Query: 178 ---------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
E++ +F +M+ V N T VL A ++ KR
Sbjct: 157 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR 216
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
VH V + GF S+ + +L+ AY K V A +LF ++ P WN+
Sbjct: 217 VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNS 266
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 61/297 (20%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY------HVRLVFSQISN 87
C+ + CS MR+ K IHA + L + CA + L+FSQI N
Sbjct: 7 CISLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQN 66
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
P ++ N+++R Y+ + A ++ M+ + + PD+ FP + +C + + + KQ
Sbjct: 67 PNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQ 126
Query: 144 LHSQAIKFGLA-SDSFLHNTLINMYSSCWCLDQPD------------------------- 177
+H+ +K G+A SD + L+ Y+ C +
Sbjct: 127 IHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRG 186
Query: 178 ---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-SHVELK 233
EA+ F M + V+P+ L L A+ L+ K +H+ V + + + V +
Sbjct: 187 LAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIG 246
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
T L+D Y KC + R+ ++F M +F W SA +G L G A Q
Sbjct: 247 TALVDMYAKCGCIDRSVEVFEGMTKRNVFSW--------SAMIGGFALHGHVRKAMQ 295
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 54/270 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLR-----TSLFFDPCADYHVRL--------VFSQISNPTI 90
L CS + L KQIHA +LR + + D +V+ +F + N I
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNI 315
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ +++ GY +LH EA + M GL PD F S+ SCA ++ + Q+H+
Sbjct: 316 ISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAY 375
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK L +DS++ N+LI+MY+ C CL +
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWEL 435
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A+ IF+ M ++P+ +T V++L A A L K++H + + G + + L
Sbjct: 436 HDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSAL 495
Query: 237 MDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ Y C + + +F VK L WN+
Sbjct: 496 IAVYSNCYCLKDSRLVFDEMKVKDLVIWNS 525
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 44/192 (22%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH M + L D A + RLVF ++ + NS+ GY +
Sbjct: 474 KQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQ 533
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+ + EA + E+ + PD F F + + A + + ++ H Q +K GL + ++
Sbjct: 534 SENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYIT 593
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N L++MY+ C + + +A+++ +M E ++
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIE 653
Query: 193 PNAVTLVNVLTA 204
PN +T V VL+A
Sbjct: 654 PNYITFVGVLSA 665
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ RLVF + + T +++ G + + +++++ ++PD ++ ++ +C+
Sbjct: 201 YARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACS 260
Query: 137 DI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPD-------- 177
+ ++E KQ+H+ +++G D+ L N LI+ Y C + P+
Sbjct: 261 ILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTT 320
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+++F M +KP+ ++LT+ A L +VH ++
Sbjct: 321 LLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKAN 380
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + +L+D Y KC ++ A +F
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTEARKVF 408
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 36/224 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSC 135
+ R VF ++ + T +++V + + E+ + + + + P+ ++ S ++C
Sbjct: 97 YARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQAC 156
Query: 136 ADI-----YVEKQLHSQAIKFGLASDSFLHNTLINMY----------------------- 167
+ + ++ QL S +K D ++ LI+ Y
Sbjct: 157 SGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVT 216
Query: 168 -----SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
S C + + ++++FY++ NV P+ L VL+A + L K++H +
Sbjct: 217 WTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
G L L+D+Y KC V A LF M P N W
Sbjct: 277 RYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGM--PNKNIISW 318
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 52/259 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTI 90
L CS + L K++H QM+ FD A+ R VF + T+
Sbjct: 67 LAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTV 126
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ I+ Y K EA Y +M +G+ P+ F S+ +C+ + K +H+Q
Sbjct: 127 VSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQ 186
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN----------------- 190
G D + N L+++Y C +D A K+F RM+I N
Sbjct: 187 MKAAGYKPDLAVANALVSLYGKCGSVDS---ARKVFDRMKIRNVVSWTAMISSYAHHRHS 243
Query: 191 -----------VKPNAVTLVNVLTARARARDLRTVKRVHK--CVDESGFWSHVELKTTLM 237
V PNAVTL +VL+A A + + VH+ +G + L+ L+
Sbjct: 244 EEAIQLYKAMDVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALL 303
Query: 238 DAYCKCKFVSRAWDLFVKM 256
+ Y KC A +F M
Sbjct: 304 NMYAKCGDGDAARKIFDAM 322
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRT 213
D N++I YS P EAI++F M + V+PNA+T VL A + L
Sbjct: 22 DVLFWNSMIVAYSQS---GHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQ 78
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K VH+ + ++GF + +L++ Y KC ++ A ++F M
Sbjct: 79 GKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGM 121
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 56/226 (24%)
Query: 47 LEKCSTM---RELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L CS++ E K +HAQM + C R VF ++ +
Sbjct: 168 LSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNV 227
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-------YVEKQ 143
+ +++ Y + EA Y M V P+ S+ +CA + V ++
Sbjct: 228 VSWTAMISSYAHHRHSEEAIQLYKAMDVA---PNAVTLASVLSACASLGNAEEGRAVHEK 284
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
L S GLA+D L N L+NMY+ C D +
Sbjct: 285 LASTTT--GLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGR 342
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
EA+++ ME+E V+ ++ VLTA ++A L + + C+
Sbjct: 343 GGEAVEMCRSMELEGVQASSFIYGTVLTACSQAGLLESARHYFGCL 388
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 32/229 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPC-----ADYHVRLVFSQISNPTIYT 92
L++ + E K+I+A ++ L D C DY RL F+Q+SNP ++
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRL-FNQVSNPNVFL 75
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQA 148
NSI+R YT+ +L+ + Y +++ + +PDRF FP +FKSCA + Y+ KQ+H
Sbjct: 76 YNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
KFG N LI+MY D +A K+F M +V ++ ++L+ AR
Sbjct: 136 CKFGPRFHVVTENALIDMYMK---FDDLVDAHKVFDEMYERDV----ISWNSLLSGYARL 188
Query: 209 RDLRTVKRV-HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ K + H +D++ + T ++ Y A D F +M
Sbjct: 189 GQMKKAKGLFHLMLDKT-----IVSWTAMISGYTGIGCYVEAMDFFREM 232
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + TI + +++ GYT + EA F+ EM + G+ PD S+ SCA
Sbjct: 197 LFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGS 256
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------- 178
+ + K +H A + G + + N LI MYS C + Q +
Sbjct: 257 LELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISG 316
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTA 204
AI+ F M+ VKPN +T + +L+A
Sbjct: 317 YAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+I+ Y+ C EA+ F M++ ++P+ ++L++VL + A+ L K +H
Sbjct: 211 AMISGYTGIGCYV---EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYA 267
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ GF + L++ Y KC +S+A LF +M
Sbjct: 268 ERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQM 302
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 17/141 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY--------------HVRLVFSQISNPTIYT 92
L+K T ++ QIHAQ++ T+L D A + LVF+QI P +
Sbjct: 18 LQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFI 77
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEKQL-HSQAI 149
CN++V+ YT + A FY EM +GL+ D + +P + K+C + +E L +A+
Sbjct: 78 CNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAV 137
Query: 150 KFGLASDSFLHNTLINMYSSC 170
K G D F+ N LI+MY C
Sbjct: 138 KRGFGGDVFVVNGLISMYCRC 158
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + + ++ GY EA + +M+ QG+ PDR +C+ +
Sbjct: 259 REIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQL 318
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
Q +H + + D + L++MY C DEA +IF M NV
Sbjct: 319 GALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC---GSRDEARRIFNSMPERNVVSWN 375
Query: 196 VTLVNV 201
V +V +
Sbjct: 376 VMIVGL 381
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+F ++ + + + ++ GY K + A +F+ M + L+ M + ++
Sbjct: 198 MFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDG-YAKVGEME 256
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
V +++ + ++ + S S + I+ Y+ EA+ +F +M + +KP+ V++V
Sbjct: 257 VAREIFDKMLQKNVISWSIM----IDGYAQH---RDSKEALNLFRQMLCQGIKPDRVSVV 309
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
++A ++ L + +H + + + ++T L+D Y KC A +F M P
Sbjct: 310 GAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSM--P 367
Query: 260 WNNYGQW-AMSATVGPQG 276
N W M +G G
Sbjct: 368 ERNVVSWNVMIVGLGMNG 385
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
F QI +P + + N+I+ +++ +EA F+ +M+ GL+PD F SL +C
Sbjct: 417 AFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVT 476
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W----- 171
I Q+HS IK GL ++ + N+L+ MY+ C W
Sbjct: 477 INQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILS 536
Query: 172 -CLD--QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
CL Q E ++F M KP+ +T+ +L A L +VH +SG
Sbjct: 537 ACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVV 596
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
V + L+D Y KC + A D+F
Sbjct: 597 DVSVSNRLIDMYAKCGSLKHARDVF 621
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 37/222 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
H VF+ IS + + S++ G+T EA + +M QG P+ F+F S+F +C
Sbjct: 311 HASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSAC 370
Query: 136 ADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYS----------SCWCLDQPD----- 177
+ +Q+H KFGL + F +L +MY+ + + ++ PD
Sbjct: 371 RSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWN 430
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EAI F +M + P+ +T +++L A + ++H + +
Sbjct: 431 AIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKI 490
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
G + +L+ Y KC + A+++F + L WN
Sbjct: 491 GLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWN 532
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 52/264 (19%)
Query: 50 CSTMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTC 93
C+++R LK +IH +L+++ D H+ R F + + +
Sbjct: 167 CTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSW 226
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIK 150
++ GY+ ++A + Y +M+ G PD F S+ K+C DI + +QLH IK
Sbjct: 227 TIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIK 286
Query: 151 FGLASDSFLHNTLINMYSS--------------------CWC--------LDQPDEAIKI 182
G N LI+MY+ W L EA+ +
Sbjct: 287 SGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYL 346
Query: 183 FYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M + +PN +V +A + +++H + G +V +L D Y
Sbjct: 347 FRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYA 406
Query: 242 KCKFVSRAWDLFVKMLFP----WN 261
K F+ A F ++ P WN
Sbjct: 407 KFGFLPSAIRAFYQIESPDLVSWN 430
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQIS-NPTIYTCNSIV 97
T+ + QIH+ +++ L + C++ H VF +S N + + N+I+
Sbjct: 476 TINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAIL 535
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLA 154
E F + M+ PD ++ +CA++ V Q+H ++K GL
Sbjct: 536 SACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLV 595
Query: 155 SDSFLHNTLINMYSSCWCL----------DQPD------------------EAIKIFYRM 186
D + N LI+MY+ C L PD EA+ +F M
Sbjct: 596 VDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMM 655
Query: 187 EIENVKPNAVTLVNVLTA 204
+ V+PN VT + VL+A
Sbjct: 656 KNLGVQPNEVTYLGVLSA 673
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H R VF NP I + +S++ GY L HEA + M G+ P+ + + +C+
Sbjct: 616 HARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACS 675
Query: 137 DI-YVEKQLH---SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
I VE+ H + I+ G+ + ++++ + CL + + IK
Sbjct: 676 HIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIK 724
>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
Length = 734
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 36/226 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + + N+++ + + +A YH M + L P+ F+F SL +CA +
Sbjct: 170 IFDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGN 229
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + +H + GL D + N LINMYS C C+D+
Sbjct: 230 LQLGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAG 289
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA + RM + V P + T V +L+A L K +H+ V GF S
Sbjct: 290 YAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSA---CSTLEQGKHLHEEVKAFGFESI 346
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275
++T LM Y +C + A LF KM +Y W+ T Q
Sbjct: 347 TVVETALMFMYSRCGSLEDAEFLFAKM--QQKDYVSWSAMVTSHAQ 390
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 103/221 (46%), Gaps = 39/221 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
+ F +I++ + N ++ GY + EA +H+M + P+ F+F S +CA
Sbjct: 68 AKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKMDIP---PNGFIFASALAACAG 124
Query: 137 --DIYVEKQLHSQAIKF-GLASDSFLHNTLINMYSSCWCL-------------------- 173
D+ +++H + ++ +ASD + N+L+ MY+ C +
Sbjct: 125 LGDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNA 184
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
D P++A+++++RM+ E ++PN ++LTA A +L+ +H+ + G
Sbjct: 185 MISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLG 244
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ ++ L++ Y KC + A ++F + +F W +
Sbjct: 245 LQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTS 285
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 28/204 (13%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS ++ ++T S++ GY EAF FY M + P F +L +C+ +
Sbjct: 271 VFSGLATRDVFTWTSMIAGYAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSACSTLEQ 330
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
K LH + FG S + + L+ MYS C L+
Sbjct: 331 GKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQ 390
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
P +A+ +F +M +E ++ + T + L A + RD R K + + +D SG +
Sbjct: 391 FGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSI 450
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+ AY KC + A +F +M
Sbjct: 451 RADLVSAYSKCGDMEEARKIFDRM 474
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
S + ++ I A ++ + C D R +F ++ + + T +++GY + A
Sbjct: 442 SGIDKMDSIRADLVSA---YSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAA 498
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQ--AIKFGLASDSFLHNTLINMY 167
+H M +G+ PD F S+ ++C+++ +++H++ A + G SD FL N LINMY
Sbjct: 499 LELFHRMKPEGVEPDSVTFSSVLQACSNLEDGREVHARILAAQGGKMSD-FLGNGLINMY 557
Query: 168 SSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVTLV 199
+ C + Q D+ I + M E V P+ VTL+
Sbjct: 558 ARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLI 617
Query: 200 NVLTA 204
+L +
Sbjct: 618 AILNS 622
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 78/285 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DY--HVRLVFSQISNPTI 90
L++CS ELKQIHA+ML+T L D A D+ + ++VF P
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ N ++RG++ + + L Y M+ + + FPSL K+C+++ Q+H+Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 148 AIKFGLASDSFLHNTLINMYSSCWC----------LDQPDE------------------A 179
K G +D + N+LIN Y+ + +PD+ A
Sbjct: 141 ITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIA 200
Query: 180 IKIFYRM-----------------------------EIEN--VKPNAVTLVNVLTARARA 208
+ +F +M E++N V+P+ V+L N L+A A+
Sbjct: 201 LTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQL 260
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K +H ++++ L L+D Y KC + A ++F
Sbjct: 261 GALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F +++ + +++ GY +++ EA +HEM + PD + +CA +
Sbjct: 203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 262
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+Q +HS K + DS L LI+MY+ C +++
Sbjct: 263 LEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISG 322
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI F M+ +KPN +T VLTA
Sbjct: 323 YAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 44/254 (17%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L CST+R L++ +H M+R + + C + VF ++ N I
Sbjct: 157 LNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDI 216
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
T N +V G EAF F+ M+ +G PD+ + S+ +C + LHS +K
Sbjct: 217 VTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNACTSLEQGTLLHSVIMK 276
Query: 151 FGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKI 182
G D + L+NM+S C + +P+ A++
Sbjct: 277 AGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVSWTSVISAYAQAGEPERALEC 336
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+ +M E + + +L A D+ K VH + +SG + + + L+D Y K
Sbjct: 337 YAKMLNEGMVADKRAYTTILNVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVK 396
Query: 243 CKFVSRAWDLFVKM 256
C + A+ LF M
Sbjct: 397 CGRLKDAYRLFQDM 410
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 130/321 (40%), Gaps = 64/321 (19%)
Query: 3 APLPLHHQTRTPAL-SSDNS---------PLINLDNINNNNINSQYQAHFCLVSLEKCST 52
P L + R+ A+ SD+ P +L + I A+ CL L +C+
Sbjct: 4 GPYALKKRRRSRAVVGSDDDIRDLCLNGQPKNSLHILEQRGIEPSSYAYVCL--LRRCTH 61
Query: 53 MREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNSI 96
M++L K +HA M ++ + C R VF ++ ++T +
Sbjct: 62 MKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCGSLVDARQVFDRMVERDMFTYTMM 121
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEK--QLHSQAIKFGL 153
+ GY +A+ Y +M + + DR F ++ C+ + +EK ++H ++ G+
Sbjct: 122 LTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILNVCSTLRSLEKGMKVHQDMVRGGI 181
Query: 154 ASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYR 185
D L NTLI+MY+ C L Q DEA + F
Sbjct: 182 RPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFEFFKA 241
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M E KP+ VT +++L A L +H + ++GF V + T L++ + KC
Sbjct: 242 MLDEGQKPDKVTYISILNA---CTSLEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCGS 298
Query: 246 VSRAWDLFVKMLFPWNNYGQW 266
V A +F K+ P N W
Sbjct: 299 VVDALKVFQKL--PQRNVVSW 317
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 44/248 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTIYTC 93
L C+++ + +H+ +++ F C L VF ++ + +
Sbjct: 258 LNACTSLEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVSW 317
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++ Y A Y +M+ +G++ D+ + ++ CA DI K +H ++
Sbjct: 318 TSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEKGKAVHGHIVQ 377
Query: 151 FGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKI 182
G+A+D N LI+MY C L Q EA+
Sbjct: 378 SGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRDVVSWTTLIEGWVQHRQYQEALDT 437
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M++E V PN VT + VL A A L KR+H + E+G + ++ L D Y K
Sbjct: 438 FNDMQLEGVMPNTVTFLGVLKACAGMGSLVDGKRIHARIVEAGLAENAHIRHALADMYAK 497
Query: 243 CKFVSRAW 250
C A+
Sbjct: 498 CDSCGNAF 505
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 123/277 (44%), Gaps = 57/277 (20%)
Query: 40 AHFCLVSLEKCSTMRELKQIHAQML----------RTSLFFDPCA-----DYHVRL-VFS 83
A+F L+ L+KCS+ ++KQ+ A ++ RT L + CA D L +F
Sbjct: 2 AYFNLL-LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLL-ELCAISSFGDLSYALHIFR 59
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI--PDRFMFPSLFKSCADIYVE 141
I P+ N+++RG + A +Y M + D K+CA
Sbjct: 60 YIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALAR 119
Query: 142 K---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD----------- 177
QLHSQ ++FG +D L TL++ Y+ LD QPD
Sbjct: 120 SEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGF 179
Query: 178 -------EAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+AI F RM+++ N++PNAVT+ L A ++ L+ + VHK + E S+
Sbjct: 180 AQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSN 239
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
V++ ++D Y KC + +A+ +F M L WN
Sbjct: 240 VQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWN 276
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 123/277 (44%), Gaps = 57/277 (20%)
Query: 40 AHFCLVSLEKCSTMRELKQIHAQML----------RTSLFFDPCA-----DYHVRL-VFS 83
A+F L+ L+KCS+ ++KQ+ A ++ RT L + CA D L +F
Sbjct: 2 AYFNLL-LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLL-ELCAISSFGDLSYALHIFR 59
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI--PDRFMFPSLFKSCADIYVE 141
I P+ N+++RG + A +Y M + D K+CA
Sbjct: 60 YIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALAR 119
Query: 142 K---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD----------- 177
QLHSQ ++FG +D L TL++ Y+ LD QPD
Sbjct: 120 SEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGF 179
Query: 178 -------EAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+AI F RM+++ N++PNAVT+ L A ++ L+ + VHK + E S+
Sbjct: 180 AQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSN 239
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
V++ ++D Y KC + +A+ +F M L WN
Sbjct: 240 VQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWN 276
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 38/202 (18%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP---------CA------DYHVRLVFSQISNPTIYTCN 94
C T R+LKQ+HA ++T DP CA DY R VF Q+ P + N
Sbjct: 29 CKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDY-ARAVFRQMPEPNCFCWN 87
Query: 95 SIVRGYTNKNLHH---EAFLFYHEMIVQGLI-PDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+I+R N H EA + + M+ G + P+RF FPS+ K+CA + KQ+H
Sbjct: 88 TILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR----------MEIENVKPNA-V 196
+KFG D F+ + L+ MY C + ++A +F + ME++ K + V
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVM---EDAYSLFCKNVVDFDGSCQMELDKRKQDGNV 204
Query: 197 TLVNVLT-ARARARDLRTVKRV 217
L N++ + R D+++ K +
Sbjct: 205 VLWNIMIDGQVRLGDIKSAKNL 226
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +F M+ N+ PN VTLV+VL A AR L K +H ++ L + L+
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALV 312
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
D Y KC + A +F + P N W SA +G + GR A
Sbjct: 313 DMYSKCGSIDEALQVFETL--PKRNAITW--SAIIGAFAMHGRAEDA 355
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
+F ++ ++ + N ++ GY EA + EM + P+ S+ + A I
Sbjct: 226 LFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGA 285
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ K +H A K + D L + L++MYS C + DEA+++F + K NA+T
Sbjct: 286 LELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSI---DEALQVFETLP----KRNAIT 338
Query: 198 ---LVNVLTARARARD 210
++ RA D
Sbjct: 339 WSAIIGAFAMHGRAED 354
>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Brachypodium distachyon]
Length = 622
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 139/352 (39%), Gaps = 71/352 (20%)
Query: 4 PLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHF-CLVSLEK--CSTMRELKQIH 60
P P HHQ TP + + I + QA + C S + + E+++ H
Sbjct: 8 PQPQHHQVATP-----RTNPPAAPAPASEQIRLREQAPWPCRPSTKPVPARGLDEVRKAH 62
Query: 61 AQMLRTSLFFDP---------CA--------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
A+ ++ L P CA +Y +F+ + P + N+++RG+
Sbjct: 63 ARHVKLGLDRSPRHARPLLAACALGSWPGGMEYAA-AIFAALDEPEAFDYNTLMRGHVAH 121
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLAS-DSFL 159
+ A Y M+ QG+ PDR+ FP + K+CA + +QLH K G + D +
Sbjct: 122 DDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASGQGRQLHGHVAKLGFSQHDEHV 181
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIE------------------------------ 189
N+LI+ Y C +P+ A + F +ME E
Sbjct: 182 GNSLISFYGRC---GEPELARRAFEQMEAEESTTAASWSALLAAYTRAGLWADCLDSFGA 238
Query: 190 ----NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
+P ++V+ L+A A + +H + + + ++T+L+D Y KC
Sbjct: 239 MARAGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRNTVALNTFMETSLVDMYAKCGC 298
Query: 246 VSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHK 297
+ +A +F M + +W SA V L G A Q+ ++ HK
Sbjct: 299 IDKASAVFDAM----DGKNEWTYSAMVSGLALHGDGLKALQVFDAMAREGHK 346
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 38/202 (18%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP---------CA------DYHVRLVFSQISNPTIYTCN 94
C T R+LKQ+HA ++T DP CA DY R VF Q+ P + N
Sbjct: 29 CKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDY-ARAVFRQMPEPNCFCWN 87
Query: 95 SIVRGYTNKNLHH---EAFLFYHEMIVQGLI-PDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+I+R N H EA + + M+ G + P+RF FPS+ K+CA + KQ+H
Sbjct: 88 TILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR----------MEIENVKPNA-V 196
+KFG D F+ + L+ MY C + ++A +F + ME++ K + V
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVM---EDAYSLFCKNVVDFDGSCQMELDKRKQDGNV 204
Query: 197 TLVNVLT-ARARARDLRTVKRV 217
L N++ + R D+++ K +
Sbjct: 205 VLWNIMIDGQVRLGDIKSAKNL 226
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +F M+ N+ PN VTLV+VL A AR L K +H ++ L + L+
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALV 312
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
D Y KC + +A +F + P N W SA +G + GR A
Sbjct: 313 DMYSKCGSIDKALQVFETL--PKRNAITW--SAIIGAFAMHGRAEDA 355
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
+F ++ ++ + N ++ GY EA + EM + P+ S+ + A I
Sbjct: 226 LFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGA 285
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ K +H A K + D L + L++MYS C +D+ A+++F + K NA+T
Sbjct: 286 LELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDK---ALQVFETLP----KRNAIT 338
Query: 198 ---LVNVLTARARARD 210
++ RA D
Sbjct: 339 WSAIIGAFAMHGRAED 354
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 50/250 (20%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD-PCADYHVRL-------------- 80
+ Y + ++ C +MRELKQ+HA +++T D A +RL
Sbjct: 11 ASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALS 70
Query: 81 VFSQISNPTIYTCNSIVRGYTN-KNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA-- 136
VF Q+ + N+++R ++ H +A L + +M+ + + P++F FPS+ K+CA
Sbjct: 71 VFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVM 130
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ KQ+H +KFGL D F+ L+ MY C + ++A +FYR +E V
Sbjct: 131 ARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSM---EDANVLFYR-NVEGVD--- 183
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
D+R + R DE G +V L ++D Y + + A +LF +
Sbjct: 184 --------------DVRNLVR-----DERGREFNVVLCNVMVDGYARVGNLKAARELFDR 224
Query: 256 M----LFPWN 261
M + WN
Sbjct: 225 MAQRSVVSWN 234
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCAD 137
R +F +++ ++ + N ++ GY + EA +H M+ G ++P+R S+ + +
Sbjct: 219 RELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISR 278
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP- 193
+ V K +H A K + D L + L++MY+ C +++ AI++F R+ NV
Sbjct: 279 LGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEK---AIQVFERLPQNNVITW 335
Query: 194 NAVTLVNVLTARARARDL-RTVKRVHKC 220
NAV + L +A D+ + R+ KC
Sbjct: 336 NAV--IGGLAMHGKANDIFNYLSRMEKC 361
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 178 EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EAI+IF+RM ++ +V PN VTLV+VL A +R L K VH +++ L + L
Sbjct: 248 EAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSAL 307
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
+D Y KC + +A +F ++ P NN W +A +G + G+
Sbjct: 308 VDMYAKCGSIEKAIQVFERL--PQNNVITW--NAVIGGLAMHGK 347
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF QI PT + N ++RG + +A FY + G++PD FP + K+CA I
Sbjct: 508 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 567
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+Q+H+ K GL SD F+ N+LI++Y++C L
Sbjct: 568 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 627
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++ + + +F M+ E VK + VT++ V++A R D + + +++
Sbjct: 628 YSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVD 687
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L TL+D + + + A +F M
Sbjct: 688 VYLGNTLVDYFGRRGQLQSAEKVFFNM 714
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Query: 74 ADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
ADY VR + +Y N++V + + A + M V+ ++ M + K
Sbjct: 672 ADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAK 731
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
DI +++ Q K L S S ++I+ YS + +A++IF +M+ VKP
Sbjct: 732 G-QDIVSARKIFDQIPKKDLISWS----SMISGYSQA---NHFSDALEIFRQMQRAKVKP 783
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+A+ + +V+++ A L K VH+ V + + ++ +L+D Y KC A +F
Sbjct: 784 DAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVF 843
Query: 254 VKM----LFPWNN 262
+M WN+
Sbjct: 844 KEMKEKDTLSWNS 856
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNP 88
F L + + + + E +Q+H + + L D C + + R VF ++
Sbjct: 557 FILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 616
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ + NS++ GY+ N + + M +G+ D+ + +C D + +
Sbjct: 617 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 676
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
+ + D +L NTL++ + Q A K+F+ M++ N+ VT+ ++ A
Sbjct: 677 RYIEDYCIEVDVYLGNTLVDYFGR---RGQLQSAEKVFFNMKVRNI----VTMNAMIAAY 729
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A+ +D+ + +++ + + S ++++ Y + S A ++F +M
Sbjct: 730 AKGQDIVSARKIFDQIPKKDLISW----SSMISGYSQANHFSDALEIFRQM 776
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF----MFPSLF 132
+ RL+F ++ + + + ++ GYT EA + M+ +G+ P + P+L
Sbjct: 173 YARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPAL- 231
Query: 133 KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----DE---------- 178
+ I + + LH K GL D + N+LI++Y+ + DE
Sbjct: 232 SNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSW 291
Query: 179 ---------------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A+++F M ++PN +T ++VL A
Sbjct: 292 TSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHA 332
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
+P EA+ +F RM E + P+ +T++ V+ A + + + +H ++ G V +
Sbjct: 201 RPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGN 260
Query: 235 TLMDAYCKCKFVSRAWDLFVKML 257
+L+D Y K + + +F +ML
Sbjct: 261 SLIDLYAKIGSIQNSLRVFDEML 283
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
LE R+L QIH+Q++ +F +H ++++ Y++
Sbjct: 29 LEHQDRRRQLLQIHSQLIAHQVFDRRPTPWH-----------------ALLKAYSHGPHP 71
Query: 107 HEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLHNT 162
+A LF H D + F K+CA + + QLH ++ G +++H
Sbjct: 72 QDALQLFRHARWHAA--DDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTA 129
Query: 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
L+N+Y C CL A F M ++ NAV+ V+T A ++ + +
Sbjct: 130 LVNVYILCGCLADSRMA---FEEMPVK----NAVSWNVVITGFAGWGEVEYARLLF---- 178
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHS 282
E +V + ++D Y + A LF +M+ + + + A V VG+
Sbjct: 179 ERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKIL 238
Query: 283 TAHQISGPCPKKA 295
+ G C K+
Sbjct: 239 IGEALHGYCEKEG 251
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 48/261 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTI 90
L+ CS+ + L +IH +++++ L D + + +I T+
Sbjct: 486 LKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTM 545
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+I+ G+T +A F++EM+ + PD F + + +CA+ + + KQ+H Q
Sbjct: 546 VSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQ 605
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
IK L SD ++ +TL++MYS C + +EA
Sbjct: 606 IIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEA 665
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMD 238
+ F RM++ENV+PN T V++L A A + + + + + E G +E + ++D
Sbjct: 666 LGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMID 725
Query: 239 AYCKCKFVSRAWDLFVKMLFP 259
+ +S A L +M F
Sbjct: 726 IIGRSGRISEALKLIQEMPFE 746
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F ++ + N+++ + E + M+ + PD+F + S+ K+C+
Sbjct: 435 MFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQA 494
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ ++H++ IK GL DSF+ LI+MY C +++
Sbjct: 495 LNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAG 554
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++A FY M +VKP+ T VL A A + K++H + + S
Sbjct: 555 FTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSD 614
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
V + +TL+D Y KC + + +F K P ++ W AM GL
Sbjct: 615 VYITSTLVDMYSKCGNMQDSALVFEKA--PNKDFVTWNAMICGYAQHGL 661
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+ + ++ N+I+ G EA F+ ++ GL + F +CA I
Sbjct: 334 IFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKG 393
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ +QLHS ++K L S+ + N++++MY C L +
Sbjct: 394 DLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAA 453
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+E + +F M ++P+ T +VL A + + L + +H + +SG
Sbjct: 454 HEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLD 513
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ L+D YCKC + A + ++ + WN
Sbjct: 514 SFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWN 549
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 52/274 (18%)
Query: 39 QAHFCLVSLEKCSTMRELK---QIHAQMLRTSLFFDPCA-----DYHVRL--------VF 82
Q F +V L+ CS + + Q+H ++R + D D + + +F
Sbjct: 176 QTTFAVV-LKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIF 234
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY--- 139
S+I ++I+ G + H + EM G+ + ++ S+F+SCA +
Sbjct: 235 SEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALK 294
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------------- 173
V QLH+ A+K SD + ++MY+ C L
Sbjct: 295 VGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCV 354
Query: 174 --DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
++ EA++ F + + N ++L +A A + +++H +S S++
Sbjct: 355 RNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNIC 414
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +++D Y KC+ +S A +F +M WN
Sbjct: 415 VANSILDMYGKCEALSEACCMFDEMERRDAVSWN 448
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 23/165 (13%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNP 88
+ L+ C+ + + KQIH Q+++ L + C + LVF + N
Sbjct: 585 IVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNK 644
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLH-- 145
T N+++ GY L EA ++ M ++ + P+ F S+ ++CA + +++K LH
Sbjct: 645 DFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYF 704
Query: 146 -SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+ ++GL ++ +I++ + EA+K+ M E
Sbjct: 705 NAMLTEYGLEPQIEHYSCMIDIIGRS---GRISEALKLIQEMPFE 746
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 34/234 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF+QI I + N++V + L A +M G IP+ F ++ +CA I
Sbjct: 267 VFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGF 326
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
K++H++AI+ G + D F+ N L +MY+ C CL+
Sbjct: 327 LRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLRDEVSYNILIIGY 386
Query: 177 ------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
E++++F M I+ +K + V+ + V++A A L+ K VH +H+
Sbjct: 387 SQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHL 446
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ L+D Y KC + A +F ++ P + W ++ + G++G + A
Sbjct: 447 FIANALLDFYIKCGRIDLAGKVFRQI--PSRDTASW--NSMILGYGMLGELTIA 496
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 44/241 (18%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
+QIH +++T L + C R VF +IS + N+I+
Sbjct: 129 RQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYL 188
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ +A + MI G+ P+ F S+ ++ + K++H +++FGL SD F+
Sbjct: 189 ERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVA 248
Query: 161 NTLINMYSSCW-------CLDQPDE---------------------AIKIFYRMEIENVK 192
N LI+MY+ +Q E A+ + +M+ +
Sbjct: 249 NALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEI 308
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
PN+VT NVL A AR LR K +H +G + + L D Y KC ++ A +
Sbjct: 309 PNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRV 368
Query: 253 F 253
F
Sbjct: 369 F 369
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 120 GLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G+ D FP + K+CAD + +++H K G SD F+ NTL+ Y +C L
Sbjct: 2 GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61
Query: 177 D----------------------------EAIKIFYRMEIE-NVKPNAVTLVNVLTARAR 207
EAI +F M + +PN V++V+VL A
Sbjct: 62 KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
D T +++H V ++G S V + L+D Y KC +V + +F
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVF 167
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF +N + + N+++ G+ + +++M+ +G P+ + F S+ +SC+ D
Sbjct: 488 VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 547
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSS--------------------CWCL---- 173
+ + KQ+H+Q +K L + F+ L++MY+ W +
Sbjct: 548 VDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 607
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q ++A+K F +M+ E VKPN TL + L+ +R L + +++H ++G
Sbjct: 608 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGD 667
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ + + L+D Y KC V A +F ++ WN
Sbjct: 668 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWN 703
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 49/261 (18%)
Query: 47 LEKCST---MRELKQIHAQMLRTSL------------FFDPC--ADYHVRLVFSQISNPT 89
L C++ + E K IH Q++++ + + C A+Y + VF +I
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK-VFGEIPERD 193
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ + +++ G+ + A + EM +G+ + F + + K+C+ D+ KQ+H+
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253
Query: 147 QAIKFGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDE 178
+AIK G SD F+ + L+++Y+ C W + ++
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+ +F RM + + TL VL A + +LR + VH G + L+D
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVD 373
Query: 239 AYCKCKFVSRAWDLFVKMLFP 259
Y KC A +FV++ P
Sbjct: 374 MYSKCGLAGDALKVFVRIEDP 394
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 47/205 (22%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVR--------LVFSQISNPTI 90
L CS++ ++ KQ+HAQ+++ SL D + + +F+++ +
Sbjct: 539 LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDL 598
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ IV GY +A + +M +G+ P+ F S C+ I +QLHS
Sbjct: 599 FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSM 658
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
AIK G + D F+ + L++MY+ C C++ Q +A
Sbjct: 659 AIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKA 718
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
+K F M E P+ VT + VL+A
Sbjct: 719 LKAFEAMLDEGTVPDEVTFIGVLSA 743
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 105/268 (39%), Gaps = 51/268 (19%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNP 88
+L+ CS +L KQ+HA+ ++ F D C + + VF +
Sbjct: 234 TALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ 293
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+ N+++ G+ + + M + +F ++ K CA+ + + +H
Sbjct: 294 NAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVH 353
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC--------------------W-----CLDQPD--- 177
S AI+ G D F+ L++MYS C W CLDQ
Sbjct: 354 SLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSR 413
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA ++F RM V PN TL ++++A DL + +H CV + GF + L+
Sbjct: 414 EAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALV 473
Query: 238 DAYCKCKFVSRAWDLFV----KMLFPWN 261
Y K V +F + L WN
Sbjct: 474 TMYMKIGSVQDGCRVFEATTNRDLISWN 501
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------P 176
+ + ++CA D+ K +H Q IK G+ DS L N+L+N+Y+ C + P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190
Query: 177 DE--------------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+ A+ +F M E V+ N T L A + DL K+
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
VH + G +S + + + L+D Y KC + A +F+ M P N W
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCM--PKQNAVSW 298
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDP--CA---DYHVRL--------VFSQISNPTI 90
L+ C + +L+ QIH+Q+++T+ + C+ D + +L + + + +
Sbjct: 457 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 516
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ +++ GYT N +A + +M+ +G+ D + +CA + K Q+H+Q
Sbjct: 517 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 576
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A G +SD N L+ +YS C +++ +EA
Sbjct: 577 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 636
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F RM E + N T + + A + +++ K+VH + ++G+ S E+ L+
Sbjct: 637 LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 696
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC +S A F+++
Sbjct: 697 YAKCGSISDAEKQFLEV 713
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L + +K ++ +Q+H +L+ SL+F +FS +S
Sbjct: 255 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDA 314
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
T N+++ G + +A + M + GL PD SL +C ++ +QLH+
Sbjct: 315 VTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY 374
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQPDEA 179
K G AS++ + L+N+Y+ C W LD +
Sbjct: 375 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 434
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+IF +M+IE + PN T ++L R DL +++H + ++ F + + + L+D
Sbjct: 435 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM 494
Query: 240 YCKCKFVSRAWDLFVK 255
Y K + AWD+ ++
Sbjct: 495 YAKLGKLDTAWDILIR 510
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 110/264 (41%), Gaps = 51/264 (19%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKC----STMRELKQIHAQMLRTSLFFDPCAD------ 75
+D++ N I +Q L LE C ++ E +++H+Q+L+ L + C
Sbjct: 32 IDSVENRGIRPNHQTLKWL--LEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF 89
Query: 76 -------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
Y VF ++ TI+T N +++ ++NL E F + M+ + + P+ F
Sbjct: 90 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 149
Query: 129 PSLFKSCADIYVE----KQLHSQAIKFGLASDSFLHNTLINMYS---------------- 168
+ ++C V +Q+H++ + GL + + N LI++YS
Sbjct: 150 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 209
Query: 169 ----SCWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
S W + EAI++F M + + P +VL+A + L ++
Sbjct: 210 LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 269
Query: 217 VHKCVDESGFWSHVELKTTLMDAY 240
+H V + GF S + L+ Y
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLY 293
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHVR-LVFSQISNPTIYTCNSIVR 98
++E +QIHAQ + + C L F Q N++V
Sbjct: 566 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 625
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLAS 155
G+ + EA + M +G+ + F F S K+ A++ KQ+H+ K G S
Sbjct: 626 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 685
Query: 156 DSFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRME 187
++ + N LI+MY+ C + + EA+ F +M
Sbjct: 686 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 745
Query: 188 IENVKPNAVTLVNVLTA 204
NV+PN VTLV VL+A
Sbjct: 746 HSNVRPNHVTLVGVLSA 762
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 60/320 (18%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L++C+ +R L+Q +HA +L++ + + C R VF I + I
Sbjct: 54 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ +++ + N + EAF Y M + G PD+ F SL + + + + +++H +
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHME 173
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------WCL--------DQPDEA 179
++ GL + + +L+ MY+ C W L Q D A
Sbjct: 174 IVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVA 233
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++ M+ V PN +T ++L L K+VH+ + +SG+ + + +L+
Sbjct: 234 LELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITM 293
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA------HQISGPCPK 293
YCKC + A LF + P + W +A V +G H A Q G P
Sbjct: 294 YCKCGGLEEARKLFSDL--PHRDVVTW--TAMVTGYAQLGFHDEAINLFRRMQQQGIKPD 349
Query: 294 KAHKLFFFSMLKKVHVPGVL 313
K+ F S+L P L
Sbjct: 350 ---KMTFTSVLTSCSSPAFL 366
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 44/244 (18%)
Query: 57 KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
+++H +++ L +P C D R++F ++ + T ++ GY +
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
A M + P++ F S+ + C A + K++H I+ G + ++
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVV 287
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
N+LI MY C L++ DEAI +F RM+ + +K
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIK 347
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ +T +VLT+ + L+ KR+H+ + +G+ V L++ L+ Y KC + A +
Sbjct: 348 PDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLV 407
Query: 253 FVKM 256
F +M
Sbjct: 408 FNQM 411
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 32/160 (20%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +FS + + + T ++V GY H EA + M QG+ PD+ F S+ SC+
Sbjct: 302 EARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCS 361
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
+ K++H Q + G D +L + L++MY+ C +D
Sbjct: 362 SPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTA 421
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA++ F +M+ + +KP+ VT +VL+A
Sbjct: 422 IITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSA 461
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF QI PT + N ++RG + +A FY + G++PD FP + K+CA I
Sbjct: 43 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 102
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+Q+H+ K GL SD F+ N+LI++Y++C L
Sbjct: 103 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 162
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++ + + +F M+ E VK + VT++ V++A R D + + +++
Sbjct: 163 YSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVD 222
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L TL+D + + + A +F M
Sbjct: 223 VYLGNTLVDYFGRRGQLQSAEKVFFNM 249
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Query: 74 ADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
ADY VR + +Y N++V + + A + M V+ ++ M + K
Sbjct: 207 ADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAK 266
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
DI +++ Q K L S S ++I+ YS + +A++IF +M+ VKP
Sbjct: 267 G-QDIVSARKIFDQIPKKDLISWS----SMISGYSQA---NHFSDALEIFRQMQRAKVKP 318
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+A+ + +V+++ A L K VH+ V + + ++ +L+D Y KC A +F
Sbjct: 319 DAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVF 378
Query: 254 VKM----LFPWNN 262
+M WN+
Sbjct: 379 KEMKEKDTLSWNS 391
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNP 88
F L + + + + E +Q+H + + L D C + + R VF ++
Sbjct: 92 FILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 151
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ + NS++ GY+ N + + M +G+ D+ + +C D + +
Sbjct: 152 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 211
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
+ + D +L NTL++ + Q A K+F+ M++ N+ VT+ ++ A
Sbjct: 212 RYIEDYCIEVDVYLGNTLVDYFGR---RGQLQSAEKVFFNMKVRNI----VTMNAMIAAY 264
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A+ +D+ + +++ + + S ++++ Y + S A ++F +M
Sbjct: 265 AKGQDIVSARKIFDQIPKKDLISW----SSMISGYSQANHFSDALEIFRQM 311
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++S +++ N +V GY EA YH M+ + P+ + FPS+ K+CA D
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
I K++H+ I+FG SD + N LI MY C +
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E +++F M +V P+ +T+ V +A + R + VH V +S F
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGD 333
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L+ Y + A +F +M
Sbjct: 334 ISMNNSLIQMYSSLGRLEEAETVFSRM 360
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VFS++ + + + +++ + L +A Y M ++G++PD S+ +CA I
Sbjct: 356 VFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGH 415
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK---------------- 181
+ +LH AIK GL S + N+LI+MYS C C+D E +
Sbjct: 416 LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILG 475
Query: 182 -----------IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
+F+R E++KPN+VTL++VL+A AR L K +H +G
Sbjct: 476 LRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535
Query: 231 ELKTTLMDAYCKC 243
L ++D Y +C
Sbjct: 536 FLPNAILDMYVRC 548
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTI 90
L+ C+ + ++ K+IHA ++R D C D + R++F ++
Sbjct: 205 LKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR 264
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ N+++ GY E + M + PD ++ +C + E+ +H
Sbjct: 265 ISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGY 324
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
+K D ++N+LI MYSS L++ P +A
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ + ME+E + P+ +TLV+VL+A A L R+H+ ++G SHV + +L+D
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444
Query: 240 YCKCKFVSRAWDLF 253
Y KCK V A ++F
Sbjct: 445 YSKCKCVDNALEVF 458
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 133 KSCADIYVEKQLHSQAIKFG------------LASDSFLHNTLINMYSSCWCLDQPDEAI 180
KSC + + L S ++FG D F N L+ Y+ C D EA+
Sbjct: 127 KSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFD---EAL 183
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+++RM ++PN T +VL A D+ K +H V GF S V++ L+ Y
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243
Query: 241 CKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
KC +S A LF KM WN G +GL
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGL 284
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ P + + N ++ GY H+EA + EM Q + PDR + SCA +
Sbjct: 371 RQIFDCMACPGVSSWNGMLSGYFQIENHNEAIKLFREMQFQNVKPDRTTLAIILSSCAGM 430
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
+ KQ+H+ + K D ++ + LI MYS C +D D
Sbjct: 431 ELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKISKQDTVCWNSMI 490
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+ F +M + P + +L+ A+ L K++H + + GF
Sbjct: 491 AGLSLNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLSSLIHGKQIHAQIAKEGFV 550
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ V + + L+D YCKC V A F K WN
Sbjct: 551 NDVYVGSALVDMYCKCGEVGEARQFFDIMSSKNTVTWN 588
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF+ + ++ + N ++ GY K +A + M G PD + ++ +C D
Sbjct: 307 VFANLPEMSVVSWNVMIAGYGQKCKSGKAIEYLQRMQSCGFEPDEVTYINMLTACVRSGD 366
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
I + +Q+ G++S + M S + ++ +EAIK+F M+ +NVKP+ T
Sbjct: 367 IEIGRQIFDCMACPGVSSWN-------GMLSGYFQIENHNEAIKLFREMQFQNVKPDRTT 419
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L +L++ A L K+VH ++ F + + + L+ Y KC + A +F K+
Sbjct: 420 LAIILSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKI 478
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 50/235 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+FS++ I + N+++ L +A Y+EMI +GL+P F S+ +C +
Sbjct: 94 LFSEMPERNIVSWNNLISALVRGRLEQQALDVYNEMIWEGLMPTHFTLASILSACGTLLN 153
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ ++ H+ +K GL ++ ++ N L+++YS C +
Sbjct: 154 MESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGLVRDAVRLFEEMQEPNEVTYTAMMSG 213
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA---------RDLRTV--KRVH 218
D+ EA+++F M + + ++V+L +VL + LR K H
Sbjct: 214 FTQTDRVVEALEMFRLMCRQGICIDSVSLSSVLGVCTKGGCGESDQSDGSLRNALGKLAH 273
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
+ GF S + L +L+D Y K + A ++F + + WN YGQ
Sbjct: 274 GLAIKLGFESDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVSWNVMIAGYGQ 328
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 41/203 (20%)
Query: 128 FPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
+L +SC D K LH++ + GL++D+FL N LI Y C A +F+
Sbjct: 9 LANLLQSCIDKKAHLSGKLLHARIFRIGLSTDTFLLNRLIEFYFKC---KNMGYAHNLFH 65
Query: 185 RMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+M +N+ NA +LT +A +L+ R+ + E S L+ A +
Sbjct: 66 QMPHKNIYSWNA-----ILTEYCKAGNLQNAHRLFSEMPERNIVSW----NNLISALVRG 116
Query: 244 KFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPC--------PKKA 295
+ +A D++ +M++ +GL+ H T I C +K
Sbjct: 117 RLEQQALDVYNEMIW----------------EGLMPTHFTLASILSACGTLLNMESGRKC 160
Query: 296 HKLFF-FSMLKKVHVPGVLIQVH 317
H L + V+V L+ V+
Sbjct: 161 HTLIVKIGLDNNVYVSNALLSVY 183
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 30/189 (15%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTC 93
L+ C + ELK IHA +++ SL D C + L+F Q+ P Y
Sbjct: 21 LQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLY 80
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI-------VQGLIPDRFMFPSLFKSCADIY---VEKQ 143
N+++R +T+ ++ A LFY EM+ + PDRF FP + KSC+ + + KQ
Sbjct: 81 NAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQ 140
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+H+ KFG S+ + N LI+MY+ C L +A K+F M V+ +A++ ++++
Sbjct: 141 VHAHLCKFGPKSNITMENALIDMYTKCASL---LDAHKVFDGM----VERDAISWNSIIS 193
Query: 204 ARARARDLR 212
+R
Sbjct: 194 GHVGVGQMR 202
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 87/295 (29%)
Query: 33 NINSQYQAHFCL------VSLE--------KCSTMRELKQIHAQML-RTSLFFDPCADYH 77
N+ Q AH C +++E KC+++ + ++ M+ R ++ ++ H
Sbjct: 136 NLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGH 195
Query: 78 VRL--------VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
V + +F + TI + +++ GYT + +A + +M + G+ PD
Sbjct: 196 VGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISII 255
Query: 130 SLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------- 175
S+ +CA + V K +H + GL + + N L+ MYS C C+ Q
Sbjct: 256 SVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKG 315
Query: 176 -----------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
EAI++F RM+ ++PN +T + +L+A A A
Sbjct: 316 DVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHA---------- 365
Query: 219 KCVDESGFWS-----------------HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GFW+ VE L+D + +S+A D+ KM
Sbjct: 366 ------GFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKM 414
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++S +++ N +V GY EA YH M+ + P+ + FPS+ K+CA D
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
I K++H+ I+FG SD + N LI MY C +
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E +++F M +V P+ +T+ V +A + R + VH V +S F
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGD 333
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L+ Y + A +F +M
Sbjct: 334 ISMNNSLIQMYSSLGRLEEAETVFSRM 360
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VFS++ + + + +++ + L +A Y M ++G++PD S+ +CA I
Sbjct: 356 VFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGH 415
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK---------------- 181
+ +LH AIK GL S + N+LI+MYS C C+D E +
Sbjct: 416 LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILG 475
Query: 182 -----------IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
+F+R E++KPN+VTL++VL+A AR L K +H +G
Sbjct: 476 LRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535
Query: 231 ELKTTLMDAYCKC 243
L ++D Y +C
Sbjct: 536 FLPNAILDMYVRC 548
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTI 90
L+ C+ + ++ K+IHA ++R D C D + R++F ++
Sbjct: 205 LKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR 264
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ N+++ GY E + M + PD ++ +C + E+ +H
Sbjct: 265 ISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGY 324
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
+K D ++N+LI MYSS L++ P +A
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ + ME+E + P+ +TLV+VL+A A L R+H+ ++G SHV + +L+D
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444
Query: 240 YCKCKFVSRAWDLF 253
Y KCK V A ++F
Sbjct: 445 YSKCKCVDNALEVF 458
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 133 KSCADIYVEKQLHSQAIKFG------------LASDSFLHNTLINMYSSCWCLDQPDEAI 180
KSC + + L S ++FG D F N L+ Y+ C D EA+
Sbjct: 127 KSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFD---EAL 183
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+++RM ++PN T +VL A D+ K +H V GF S V++ L+ Y
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243
Query: 241 CKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
KC +S A LF KM WN G +GL
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGL 284
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDP--CA---DYHVRL--------VFSQISNPTI 90
L+ C + +L+ QIH+Q+++T+ + C+ D + +L + + + +
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ +++ GYT N +A + +M+ +G+ D + +CA + K Q+H+Q
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A G +SD N L+ +YS C +++ +EA
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F RM E + N T + + A + +++ K+VH + ++G+ S E+ L+
Sbjct: 677 LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 736
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC +S A F+++
Sbjct: 737 YAKCGSISDAEKQFLEV 753
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L + +K ++ +Q+H +L+ SL+F +FS +S
Sbjct: 295 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDA 354
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
T N+++ G + +A + M + GL PD SL +C ++ +QLH+
Sbjct: 355 VTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY 414
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQPDEA 179
K G AS++ + L+N+Y+ C W LD +
Sbjct: 415 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+IF +M+IE + PN T ++L R DL +++H + ++ F + + + L+D
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM 534
Query: 240 YCKCKFVSRAWDLFVK 255
Y K + AWD+ ++
Sbjct: 535 YAKLGKLDTAWDILIR 550
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 110/264 (41%), Gaps = 51/264 (19%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKC----STMRELKQIHAQMLRTSLFFDPCAD------ 75
+D++ N I +Q L LE C ++ E +++H+Q+L+ L + C
Sbjct: 72 IDSVENRGIRPNHQTLKWL--LEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF 129
Query: 76 -------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
Y VF ++ TI+T N +++ ++NL E F + M+ + + P+ F
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189
Query: 129 PSLFKSCADIYVE----KQLHSQAIKFGLASDSFLHNTLINMYS---------------- 168
+ ++C V +Q+H++ + GL + + N LI++YS
Sbjct: 190 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 249
Query: 169 ----SCWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
S W + EAI++F M + + P +VL+A + L ++
Sbjct: 250 LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 309
Query: 217 VHKCVDESGFWSHVELKTTLMDAY 240
+H V + GF S + L+ Y
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLY 333
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHVR-LVFSQISNPTIYTCNSIVR 98
++E +QIHAQ + + C L F Q N++V
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 665
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLAS 155
G+ + EA + M +G+ + F F S K+ A++ KQ+H+ K G S
Sbjct: 666 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725
Query: 156 DSFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRME 187
++ + N LI+MY+ C + + EA+ F +M
Sbjct: 726 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 785
Query: 188 IENVKPNAVTLVNVLTA 204
NV+PN VTLV VL+A
Sbjct: 786 HSNVRPNHVTLVGVLSA 802
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 89/319 (27%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHVRL-------------------VFSQISNPTI 90
CSTM +L+Q H+Q++R L AD HV +F I NP
Sbjct: 54 CSTMPDLRQYHSQIIRLGL----SADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDA 109
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+I++ Y + L Y M+ + P+ F FPS+ ++C DI + KQ+H+
Sbjct: 110 FFYNTIIKAYLQHLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAH 169
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+K G + N LI+MY+ ++ DEA
Sbjct: 170 VLKLGFGAHVISLNNLIHMYARFQAFEEARCVLYSMPEQNFISWTTLISGYSQWGLVDEA 229
Query: 180 IKIFY-------------------------------RMEIENVKPNAVTLVNVLTARARA 208
++F RM E V + +L+A
Sbjct: 230 FRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATMLSACTGL 289
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAM 268
L K +H +++ G +L T ++D YCKC + +A ++F + P W
Sbjct: 290 GALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKCGSLEKALEVFKGL--PHKGISSW-- 345
Query: 269 SATVGPQGLVGRHSTAHQI 287
+ +G + G+ A ++
Sbjct: 346 NCMIGGLAMHGKGEAAIEL 364
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 65/327 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRT---------SLFFDPCADYH----VRLVFSQISNPTI 90
L C+++ L +QIH Q++++ S+ D A + R + ++ +
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GYT +L EA + EM QG+ D F S +CA I +Q+H+Q
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ 541
Query: 148 AIKFGLASDSFLHNTLINMYSSCW----------CLDQPD------------------EA 179
+ G + D + N L+++Y+ C +D D EA
Sbjct: 542 SYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEA 601
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F +M V+ N T + ++A A +++ K++H + ++G+ S E L+
Sbjct: 602 LQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITL 661
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN---------NYGQWAMS--ATVGPQGLVGRHSTA 284
Y KC + A F +M + WN YG A+S + GL+ H T
Sbjct: 662 YSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTF 721
Query: 285 HQISGPCPKKA---HKLFFFSMLKKVH 308
+ C L +F + K H
Sbjct: 722 VGVLSACSHVGLVNEGLSYFRSMSKEH 748
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 122/261 (46%), Gaps = 52/261 (19%)
Query: 57 KQIHAQML-----RTSLFFDPCADYH--------VRLVFSQISNPTIYTCNSIVRGYTNK 103
+QIHA+++ + L +P D + +LVF ++ + +++ G +
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLH 160
EA L + +M +IP ++F S+ +C I + K QLH +K+GL+S++F+
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251
Query: 161 NTLINMYSSCWCL-------------DQ---------------PDEAIKIFYRMEIENVK 192
N L+ +YS L D+ D A+++F +M+++ +K
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ VT+ ++L+A A K++H V + G S + ++ +L+D Y KC + A +
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371
Query: 253 FV----KMLFPWN----NYGQ 265
F+ + + WN YGQ
Sbjct: 372 FLTTETENVVLWNVMLVAYGQ 392
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
+FS++ + NS++ G + A + +M + + PD SL +CA +
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
Y KQLHS IK G++SD + +L+++Y C+ ++
Sbjct: 330 GYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVA 389
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E+ IF +M+IE + PN T ++L L +++H V +SGF +
Sbjct: 390 YGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFN 449
Query: 230 VELKTTLMDAYCK 242
V + + L+D Y K
Sbjct: 450 VYVCSVLIDMYAK 462
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 54/278 (19%)
Query: 29 INNNNINSQYQAHFCLVSLEKC---STMRELKQIHAQMLRTSLFFDPCADYHVRLV---- 81
+ I + Q + L E C ++ + K++HA++ ++ FD RL+
Sbjct: 1 MEERGIRANVQTYLWL--FEGCFNSGSLLDAKKLHARIFKSG--FDGEDVLGSRLIDIYL 56
Query: 82 -----------FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
F I + + N ++ G K L + + MI + + PD F S
Sbjct: 57 AHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFAS 116
Query: 131 LFKSC----ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------ 174
+ ++C A V +Q+H++ I G S + N LI++YS +D
Sbjct: 117 VLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK 176
Query: 175 ----------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
+ DEAI +F +M V P +VL+A + + +++H
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + G S + L+ Y + + A +F KM
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274
>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 598
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 39/260 (15%)
Query: 56 LKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115
L + ++R +D C L+F + ++ T +++V G+ + + F ++
Sbjct: 185 LNSVLTMLVRAGQLYDAC------LLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNH 238
Query: 116 MIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M G D +L + ++ V K +H+ IK G S+ L ++L+N+Y+ C
Sbjct: 239 MQTAGYKFDSVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGD 298
Query: 173 LD----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
L+ PD+A+K+F M +V+PN T+ +VL+A
Sbjct: 299 LEAAQEVFDAVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLSA 358
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264
A K+V V G + + T L+D YCKC V+ A ++F + +
Sbjct: 359 CANLGSANQAKKVEDHVVAIGLQKDLRVATGLIDTYCKCGNVTLAREIFDGVTTTNRDLA 418
Query: 265 QWAMSATVGPQGLVGRHSTA 284
W SA + +G S A
Sbjct: 419 IW--SAMINGYACIGEGSEA 436
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ +PT+ + N +V Y+ + EA ++ M G+ P L D
Sbjct: 100 RRLFDEMPSPTLISWNCMVTAYSKSSCVTEAVAMFNTMRGVGVRPSGATLVGLLSGRVDS 159
Query: 139 YVEKQ----LHSQAIKFGLASDSFLHNTLINM-------YSSCWCLD------------- 174
+ L+ ++K GL +D + N+++ M Y +C D
Sbjct: 160 LSTRNPGLCLYGYSMKSGLDTDLPVLNSVLTMLVRAGQLYDACLLFDSMHEKSVVTWSAM 219
Query: 175 -----QPDEAIKIFY---RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
Q + +K+F M+ K ++V LVN+++A +L K VH + +SGF
Sbjct: 220 VSGFLQTGDYMKVFGLFNHMQTAGYKFDSVALVNLISAAVLLGNLLVAKGVHALLIKSGF 279
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
S +L ++L++ Y KC + A ++F
Sbjct: 280 ESEQDLMSSLVNLYAKCGDLEAAQEVF 306
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 35/133 (26%)
Query: 113 YHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSS 169
Y ++ GL D FPSL KSCA + + + +H+ A+ G ASD F+ +L++MY+
Sbjct: 33 YVPLLAAGLHGDASTFPSLAKSCAALRLPRLGCSVHAHALLVGAASDVFVLTSLLDMYAK 92
Query: 170 CWCLDQPD------------------------------EAIKIFYRMEIENVKPNAVTLV 199
C CL PD EA+ +F M V+P+ TLV
Sbjct: 93 CACL--PDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAVAMFNTMRGVGVRPSGATLV 150
Query: 200 NVLTARARARDLR 212
+L+ R + R
Sbjct: 151 GLLSGRVDSLSTR 163
>gi|224117958|ref|XP_002317698.1| predicted protein [Populus trichocarpa]
gi|222858371|gb|EEE95918.1| predicted protein [Populus trichocarpa]
Length = 300
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + NP + N+++RG+ N +AF FY M +GL+ D F F L K DI
Sbjct: 44 VFEKTENPDAFIWNTMIRGFGKTNDAPKAFEFYKRMQERGLVADDFTFSFLLK---DIET 100
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+Q A+ NT+I Y SC + EA+ +F RM V+P+ TLV
Sbjct: 101 SRQQIFPAL--------VAWNTMIGSYVSC---GKFKEALGMFSRMMELGVEPDEATLVE 149
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+A + L + H C+ + S +E+ +L++ Y KC + A++ F M
Sbjct: 150 TFSAGSSLGALDFGRWDHSCISNTDHGSIIEVNYSLLNMYAKCGALEEAYETFDGM 205
>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 47/262 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP--------CADYHVRL---VFSQISNPTIYTCNS 95
LE C+ ++ QIH M++T+L DP A ++ +F +I NP ++ N+
Sbjct: 35 LESCNGTSKISQIHCYMVKTALDLDPFTLSKLLASAILDIKYAASIFREIRNPNLFMFNT 94
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFG 152
++RGY+N N +AF+ ++++ Q +PDRF F + K+CA I+V K +H K G
Sbjct: 95 MLRGYSNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSG 154
Query: 153 LASDSFLHNTLINMYSSC---------------------W--CLD------QPDEAIKIF 183
+ ++N L++ Y +C W +D QP + F
Sbjct: 155 HGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTF 214
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+M + N TL++V +A + + ++ + G S++ + T L+D Y K
Sbjct: 215 RQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKF 274
Query: 244 KFVSRAWDLF----VKMLFPWN 261
+ A +F K + WN
Sbjct: 275 GDLDEAGTIFNEVAEKDVIVWN 296
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 37/223 (16%)
Query: 69 FFDPCA---DYHVRLVFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
F+ C D H +F +IS + + N+++ GY + + +M +GLI +
Sbjct: 168 FYGACEQIKDAHK--LFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTFRQMCRRGLIAN 225
Query: 125 RFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---- 177
S+ + D+ + L+ IK GL S+ + LI+MY LD+
Sbjct: 226 TGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFN 285
Query: 178 ------------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
+A+ + M++E +KPN+ TL +++A A + + T
Sbjct: 286 EVAEKDVIVWNCLIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLAGLISACATSGAVST 345
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K + D G V L TTL+ Y K F+ +A D+F KM
Sbjct: 346 GKYLANYADNEGLDLDVVLGTTLIGMYAKFGFLDKAIDIFDKM 388
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 38/208 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F++++ + N ++ Y L +A H M ++G+ P+ L +CA
Sbjct: 283 IFNEVAEKDVIVWNCLIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLAGLISACATSGA 342
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ K L + A GL D L TLI MY+ LD
Sbjct: 343 VSTGKYLANYADNEGLDLDVVLGTTLIGMYAKFGFLDKAIDIFDKMKNKDVKTWTAMITG 402
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESG 225
Q + ++ YRME E +PN +T + VL A + A ++ KR+ V E G
Sbjct: 403 YGDHGQTRKVMETLYRMEEEGFRPNEITFLAVLNAYSHGGIVAEGMKCFKRM---VYEYG 459
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+E ++D + + A L
Sbjct: 460 ITPKIEHYGCIIDLLGRAGLLEEAHKLI 487
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 31/212 (14%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+H VF+++ +++ N +V GY L EA YH M+ G+ PD + FP + +SC
Sbjct: 140 WHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSC 199
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------------CL--- 173
D + +++H+ ++FG + + N L+ MY+ C C+
Sbjct: 200 GGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWN 259
Query: 174 ---------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ + +++F M + V+PN +T+ +V A D+ K +H +
Sbjct: 260 AMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKR 319
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF V +L+ Y + +A +F +M
Sbjct: 320 GFAGDVAFCNSLIQMYASLGMMRQARTVFSRM 351
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 44/244 (18%)
Query: 54 RELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGY 100
R +++HA +LR + C D R VF ++ + N+++ G+
Sbjct: 206 RMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGH 265
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDS 157
+ + M+ + P+ S+ + D+ K++H A+K G A D
Sbjct: 266 FENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDV 325
Query: 158 FLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIE 189
N+LI MY+S + Q PD+A++++ ME+
Sbjct: 326 AFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVN 385
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NV P+ +T+ + L A A L ++H+ + GF S++ + +++ Y K K + +A
Sbjct: 386 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKA 445
Query: 250 WDLF 253
++F
Sbjct: 446 IEVF 449
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 81/219 (36%), Gaps = 34/219 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
R VFS++ T +++ GY +A Y M V + PD S +C
Sbjct: 343 QARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACA 402
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI----------- 182
+ V +LH A G S + N ++ MY+ +D+ E K
Sbjct: 403 CLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSS 462
Query: 183 ----------------FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
++R + +VKPN+VT + L A A LR+ K +H V G
Sbjct: 463 MIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGI 522
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
L L+D Y KC AW F K + WN
Sbjct: 523 EYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWN 561
>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 32/207 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N ++R Y EA Y++M+ G+ P ++ +P + K+C+ I K++H A +
Sbjct: 87 NMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEIHIHAKR 146
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD-----------------------------EAIK 181
L SD ++ +++MY+ C CLD + E I+
Sbjct: 147 LDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFSLHRVCYNETIQ 206
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+ +M+ + V+PN+ T+V VL A A+A L K +H G+ V + T L+D Y
Sbjct: 207 LLAQMQKDLVRPNSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMYG 266
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQWAM 268
KC+ + A + F M N AM
Sbjct: 267 KCQCIIYARNFFDMMSIVRNEVTWSAM 293
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 92 TCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLI---PDRFMFPSLFKSCA---DIYVEKQL 144
T ++++ Y L EA LF + M ++ P ++ ++CA D+ + +
Sbjct: 289 TWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAELTDVSRGRCI 348
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCW--------------------------CLDQPD- 177
H IK G SD L NTL++ Y+ C C+ +
Sbjct: 349 HCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYSAIISGCMQNGNA 408
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+ +F+RM + + P T+V +L A A L+ H GF S + + L
Sbjct: 409 KEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHSYALIKGFTSEITICNAL 468
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
+D Y KC + A ++F +M + WN AM G GL
Sbjct: 469 IDMYAKCGRIDTARNVFDRMHKRDIVSWN-----AMIIAYGNHGL 508
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ I + N+++ Y N L EA L + M+ GL PD F L +C+
Sbjct: 482 RNVFDRMHKRDIVSWNAMIIAYGNHGLGMEALLLFDNMLADGLEPDDVTFICLLSACS 539
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE 141
+I ++ T N+++ GY EA+ + M+ G+ PD F F S + C +
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSR 292
Query: 142 ---KQLHSQAIKFGLASDSFLHNTLINMYSSC----WCLDQPDE---------------- 178
KQ+HS+ I G D+F+ N LI+MY+ C CL DE
Sbjct: 293 DGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE 352
Query: 179 --------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
A+ +F RM+ K N L ++L A A D+ + +H + + S +
Sbjct: 353 AQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDI 412
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKML 257
L + L+D Y KC V A +F +L
Sbjct: 413 ILGSALVDMYSKCGMVEEAHQVFRSLL 439
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 32/205 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCADIY 139
VF + + N+++ GY + EA YH+M + G+ PD+F F +L CA+
Sbjct: 434 VFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQR 493
Query: 140 VE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ +Q+H+ I+ + + + L++MYS C L+
Sbjct: 494 NDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIE 553
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ EA+++F +M++ +KP+ +L ++L++ D + + +H + +
Sbjct: 554 GYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEE 613
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
L+ L+D Y KC + AW ++
Sbjct: 614 EGILQVVLVDMYAKCGSMDYAWKVY 638
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 118/298 (39%), Gaps = 83/298 (27%)
Query: 47 LEKCSTMR---ELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L C+ R + +QIHA ++R ++ + C + + +F++++
Sbjct: 486 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 545
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
Y+ NS++ GY EA + +M + G+ PD F S+ SC +D ++LH+
Sbjct: 546 YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNF 605
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
++ + + L L++MY+ C +D + ++A
Sbjct: 606 IVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDA 665
Query: 180 IKIFYRMEIEN-------------------------------VKPNAVTLVNVLTARARA 208
+F +ME N ++ + +T+V ++ +
Sbjct: 666 KNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSL 725
Query: 209 RDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L ++H + + GF + V L+T L+D Y KC +++A +F M + WN
Sbjct: 726 PALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 110/289 (38%), Gaps = 41/289 (14%)
Query: 3 APLPLHHQTRTPALSSDNSPL----INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQ 58
+P P T+ PA SD +PL + D I++N+ H ++S + +
Sbjct: 55 SPKPTSIHTK-PA--SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTK 111
Query: 59 IHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118
I R+ D C + R +F ++ + N+++ Y + + E Y M
Sbjct: 112 ILMLYARSGCLDDLC---YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRG 168
Query: 119 QGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
G D+F FPS+ K+C D+ +QL S +K GL + F+ L++ Y+ +D
Sbjct: 169 SGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDD 228
Query: 176 P----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+EA IF RM V P+ T + L
Sbjct: 229 AVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGA 288
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R K+VH + GF + L+D Y KC +F +M
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 337
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 114/269 (42%), Gaps = 52/269 (19%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPT 89
+L C +R KQ+H++++ D C D L VF ++
Sbjct: 282 ALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERN 341
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHS 146
T NSI+ ++A + + M G +RF S+ + ADI ++LH
Sbjct: 342 QVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHG 401
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDE 178
++ L SD L + L++MYS C +++ +E
Sbjct: 402 HLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEE 461
Query: 179 AIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+++++ M+ E+ ++P+ T +LT A R+ +++H + + ++ ++T L+
Sbjct: 462 ALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELV 521
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
Y +C ++ A ++F +M + WN+
Sbjct: 522 HMYSECGRLNYAKEIFNRMAERNAYSWNS 550
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ I + N+++ GY+ EA + Y EM +G+ P+ F ++ +C+
Sbjct: 767 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 825
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFM 127
+ C D R VF+++ + + ++++ Y H EA Y M + + P+
Sbjct: 264 YAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVT 323
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI---- 180
F + +C D+ Q+H + + GL +D + + L+ MY C L+ +A
Sbjct: 324 FVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVE 383
Query: 181 ---------------------KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
++ E +V+PNAVT NVL A + DL ++VH
Sbjct: 384 KRDVLCWNFMLSAYSERGSPQQVIEAYEAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHS 443
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ SG + + ++T L+ Y KC+ + A +F M + PWN
Sbjct: 444 RIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWN 489
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 53/266 (19%)
Query: 50 CSTMRELKQ---IHAQMLRTSLFFDPCADYHVR-------------LVFSQISNPTIYTC 93
CS M +L Q +H++++ + L D + + VF + +
Sbjct: 429 CSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPW 488
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N ++ GY + + EA Y M G+ + F + K+C+ DI ++ +
Sbjct: 489 NFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITT 548
Query: 151 FGLASDSFLHNTLINMYSSCWCLD------------------------------QPDEAI 180
G +D L+NMY++C L+ + +EA+
Sbjct: 549 KGFETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEAL 608
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ M E +KPN+VT +VL+A + ++ +++H ++ V ++ +L+ Y
Sbjct: 609 ALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMY 668
Query: 241 CKCKFVSRAWDLFVKM----LFPWNN 262
+C + AW F K+ +F W
Sbjct: 669 ARCGSLRDAWSCFAKIHNRDVFSWTG 694
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 115/297 (38%), Gaps = 62/297 (20%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSL-----FFDPCADYH--------VRLVFSQI 85
Q CL L++C EL ++A+ T F + H R VF +
Sbjct: 25 QQQKCLTLLQQCQDSGELDVLYARFTGTGYLDNVYFRNWLIQLHGKFGNTQKSREVFDGM 84
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEK 142
+Y+ + ++ Y +EAFL + M +G+ P+ + +C+ ++ K
Sbjct: 85 QQKNVYSWSMMIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGK 144
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF------------------- 183
++H+ D L +L+NMY+ C P +A +F
Sbjct: 145 KVHAYISASEFKWDISLQTSLVNMYAKC---GSPADAKAVFDSMARKDIVTWNAMAGASV 201
Query: 184 ---------YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
M+++ VKPNA T ++ + L + + + + SG+ SHV ++
Sbjct: 202 HNGQSHKLLREMDLQGVKPNATTYASITRG---SSTLTGCRAMEQRLLASGYMSHVPVQN 258
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
L++ Y KC + A +F ++ + W S + GRHS A +I
Sbjct: 259 ALVNVYAKCGDLEGARKVFNRLERKDVISW--------STMISAYNQSGRHSEAIEI 307
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 51/262 (19%)
Query: 43 CLVSLEKCSTMREL---KQIHAQM----------LRTSL--FFDPCADYH-VRLVFSQIS 86
CL L CS EL K++HA + L+TSL + C + R VF+++
Sbjct: 44 CLHVLGACSCQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLE 103
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYVEK 142
+ + ++++ Y H EA Y M + + P+ F + +C D+ +
Sbjct: 104 RKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGR 163
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME--------------- 187
Q+H + + GL +D + + L+ +Y C L+ +A K F R+E
Sbjct: 164 QVHGRLVSLGLETDVAVGSALVQLYVKCGNLE---DAKKAFDRVEKRDVLCWNFMLSAYS 220
Query: 188 --------IE-----NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
IE +V+PNAVT NVL A + DL ++VH + SG + + ++T
Sbjct: 221 ERGSPQQVIEAYDAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMET 280
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
+L+ Y KC+ + A +F M
Sbjct: 281 SLLSLYIKCRSLKSACQVFEAM 302
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
+ +Y+ + ++ Y +EAFL + M +G+ P+ + +C+ ++
Sbjct: 1 MQQKNVYSWSMMIGAYAQNGRRNEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFG 60
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
K++H+ D L +L+NMY+ C L+
Sbjct: 61 KKVHAYISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYNQS 120
Query: 177 ---DEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
EAI+I+ ME E +V+PNAVT V V+ A D+ ++VH + G + V +
Sbjct: 121 GRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDVAV 180
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ L+ Y KC + A F ++ + WN
Sbjct: 181 GSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWN 213
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+EA +F RME E ++PNAVT ++VL A + +L K+VH + S F + L+T+L
Sbjct: 23 NEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFGKKVHAYISASEFKWDISLQTSL 82
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
++ Y KC + A +F ++ + W S + GRHS A +I
Sbjct: 83 VNMYAKCGNLEGARKVFNRLERKDVISW--------STMISAYNQSGRHSEAIEI 129
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/296 (16%), Positives = 110/296 (37%), Gaps = 86/296 (29%)
Query: 50 CSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSI 96
C + +Q+H +++ L D C + + F ++ + N +
Sbjct: 156 CGDVIRGRQVHGRLVSLGLETDVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFM 215
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGL 153
+ Y+ + + Y M V+ P+ + ++ +C+ D+ +++HS+ + GL
Sbjct: 216 LSAYSERGSPQQVIEAYDAMDVE---PNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGL 272
Query: 154 ASDSFLHNTLI---------------------------------NMYSSCWCLD------ 174
+D + +L+ NMY++C L+
Sbjct: 273 ETDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMYAACGNLEAAKRVF 332
Query: 175 ------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
+ +EA+ ++ M E +KPN+VT +VL+A + +
Sbjct: 333 GSRRDERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGN 392
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ +++H ++ V ++ +L+ Y +C + AW F K+ +F W
Sbjct: 393 ILEGRKIHSSLEGKAEELDVAVQNSLLSLYARCGSLRDAWSCFAKIHNRDVFSWTG 448
>gi|255575883|ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531751|gb|EEF33573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 393
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF + + + N+++ G + +H EA + EM L PD F S +F
Sbjct: 140 VRKVFEMMPKRDLVSWNTVIAGNAHNGMHEEALVMVREMGNVNLKPDSFTLSSVLPIFAE 199
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--- 171
++ K++H AI+ GL D F+ ++LI+MY+ C W
Sbjct: 200 YVNVDKGKEIHGYAIRHGLDGDVFIGSSLIDMYAKCTRVEDSLRVFSLLPRRDDISWNSI 259
Query: 172 ---CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
C+ DE ++ F +M NVKP V+ ++L A A L +++H + F
Sbjct: 260 IAGCVQNSLFDEGLRFFRQMLKANVKPRQVSFSSILPACAHLTTLNLGRQLHGYILRVRF 319
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++V + ++L+D Y KC V A +F KM
Sbjct: 320 DNNVFIASSLVDMYAKCGNVKVARWIFDKM 349
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 36/154 (23%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VFS + + NSI+ G +L E F+ +M+ + P + F S+ +CA
Sbjct: 244 VFSLLPRRDDISWNSIIAGCVQNSLFDEGLRFFRQMLKANVKPRQVSFSSILPACAHLTT 303
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ--------------- 175
+ + +QLH ++ ++ F+ ++L++MY+ C W D+
Sbjct: 304 LNLGRQLHGYILRVRFDNNVFIASSLVDMYAKCGNVKVARWIFDKMKQHDMVSWTAMIMG 363
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+AI +F +ME+ +K L N+LT
Sbjct: 364 YALHGHARDAISLFEQMEMRGMK-----LGNILT 392
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 116 MIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M G PD +FPS+ KSC D + + +H I+ G+ D + N L+NMY+
Sbjct: 1 MRASGKHPDHNVFPSVIKSCTLLLDFKLGESVHGCIIRLGVDVDLYTGNALMNMYAKFQS 60
Query: 173 LD 174
LD
Sbjct: 61 LD 62
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 111/277 (40%), Gaps = 48/277 (17%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRL 80
I S H V LE C++M+EL QI +++ SLF +
Sbjct: 43 IPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAAR 102
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I + +++++GY + A F M + P + F L K C AD
Sbjct: 103 VFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNAD 162
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ K++H Q I A++ F ++NMY+ C +D
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+A+++ RM+ E +P+++TLV VL A A L K +H +GF
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + T L D Y KC V A +F M + WN+
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNS 319
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RL+F + T+ + NS++ GY +A + +M+ +G+ P +CAD+
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
K +H + L SD + N+LI+MYS C +D
Sbjct: 363 GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ EA+ F M+ +KP++ T+V+V+ A A R K +H + S
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD 482
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGR 280
++ + T L+D Y KC + A LF + + WN AM G GL GR
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWN-----AMIDGYGTHGL-GR 533
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 111/277 (40%), Gaps = 48/277 (17%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRL 80
I S H V LE C++M+EL QI +++ SLF +
Sbjct: 43 IPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAAR 102
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I + +++++GY + A F M + P + F L K C AD
Sbjct: 103 VFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNAD 162
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ K++H Q I A++ F ++NMY+ C +D
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+A+++ RM+ E +P+++TLV VL A A L K +H +GF
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + T L D Y KC V A +F M + WN+
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNS 319
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RL+F + T+ + NS++ GY +A + +M+ +G+ P +CAD+
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
K +H + L SD + N+LI+MYS C +D
Sbjct: 363 GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ EA+ F M+ +KP++ T+V+V+ A A R K +H + S
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD 482
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGR 280
++ + T L+D Y KC + A LF + + WN AM G GL GR
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWN-----AMIDGYGTHGL-GR 533
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 116/297 (39%), Gaps = 83/297 (27%)
Query: 48 EKCSTMRELKQIHAQMLRTSLF--------------FDPCADY-HVRLVFSQISNPTIYT 92
EKC +MR K IHA RT L P D + +F Q+ PT +
Sbjct: 15 EKCISMRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFF 74
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS------------------ 134
N+++R +++ + LF++ M + PD F F L KS
Sbjct: 75 YNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLKSRSFTMPLVHDIHGAVFKF 134
Query: 135 --CADIYVE----------------KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-- 174
C ++V+ +++ A++ GL D + L+ ++ LD
Sbjct: 135 GFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDVA 194
Query: 175 --------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+P E + +F M + V P+ VT+++V++A A
Sbjct: 195 RKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAEL 254
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
D + VHK V+E+GF V L +L+D Y KC + AW +F K L WN
Sbjct: 255 GDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSLITWN 311
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 32/233 (13%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF + + + ++ Y+ HE + EM + G+ PD S+ +CA
Sbjct: 195 RKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAEL 254
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
D + + +H + G L N+LI+MY C CL++
Sbjct: 255 GDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSLITWNAMM 314
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GF 226
++A ++F M V P+ VT++ +L A A + R+ + + G
Sbjct: 315 MVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRLFESMQRDYGV 374
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
+E ++D + + A++L M P N+ A+ G VG
Sbjct: 375 EPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWGALLGACRIHGDVG 427
>gi|449488709|ref|XP_004158148.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 556
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 67/294 (22%)
Query: 15 ALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-- 72
A+SSD + L++L LE C+ ++ QIH M++T+L DP
Sbjct: 23 AISSDQAKLLSL--------------------LESCNGTSKISQIHCYMVKTALDLDPFT 62
Query: 73 ------CADYHVRL---VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP 123
A ++ +F +I NP ++ N+++RGY+N N +AF+ ++++ Q +P
Sbjct: 63 LSKLLASAILDIKYAASIFREIRNPNLFMFNTMLRGYSNSNDSKQAFVIFNDLRNQDFLP 122
Query: 124 DRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------- 170
DRF F + K+CA I+V K +H K G + ++N L++ Y +C
Sbjct: 123 DRFSFITTLKACARELAIHVGKGIHGIVHKSGHGLFNDVNNILLHFYGACEQIKDAHKLF 182
Query: 171 -----------W--CLD------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
W +D QP + F +M + N TL++V +A +
Sbjct: 183 DEISQRNDLVSWNTLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNT 242
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ ++ + G S++ + T L+D Y K + A +F K + WN
Sbjct: 243 MDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWN 296
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 69 FFDPCA---DYHVRLVFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
F+ C D H +F +IS + + N+++ GY + + +M +GLI +
Sbjct: 168 FYGACEQIKDAHK--LFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTFRQMCRRGLIAN 225
Query: 125 RFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
S+ + D+ + L+ IK GL S+ + LI+MY LD EA
Sbjct: 226 TGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLD---EAGT 282
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
IF E + + + +++A A + + T K + D G V L TTL+ Y
Sbjct: 283 IFN----EVAEKDVIVWNCLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYA 338
Query: 242 KCKFVSRAWDLFVKM 256
K F+ +A D+F KM
Sbjct: 339 KFGFLDKAIDIFDKM 353
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDP---------CAD------YHVRLVFSQISNPTIYTC 93
+C +M L+Q+HA ++++ L DP CA Y RLV P +
Sbjct: 43 RCVSMAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVLYAERLVRHH-PRPNSFMW 101
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIK 150
N+++R ++ A + +M+ PDR FPSL + A + + LH A+K
Sbjct: 102 NTVIRALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALK 161
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARAR 209
GLA D+++ N I MY+SC + DEA+ +F + E++ V N +V+ A ARA
Sbjct: 162 LGLAGDAYVRNATIAMYASC---GRADEALALFGQCPELDVVACN-----SVIVALARAG 213
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + V + E V + ++ AY + S A LF M
Sbjct: 214 RVDEARSVFDAMPE----RTVATWSAMVSAYARAARCSEALALFSAM 256
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 35/215 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF + T+ T +++V Y EA + M G+ P+ + S+ CA
Sbjct: 217 EARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCA 276
Query: 137 DIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ Q +H + G+A ++ + L++MY C +D
Sbjct: 277 SLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSS 336
Query: 175 ------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV- 221
Q EA+ +F ++ + P+ VT + VLTA + + +
Sbjct: 337 WNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMS 396
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
E G +E L+DA + + A D M
Sbjct: 397 SEHGVEPGIEHYGCLVDALARAGRLREAEDAIRAM 431
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 48/260 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQ-------------ISNPTI 90
L+ C+ + L +IH +++++ L D + ++S+ ++ T+
Sbjct: 484 LKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 543
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+I+ G++ + EA + +M+ G+ PD F + ++ +CA+ + + KQ+H+Q
Sbjct: 544 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 603
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
IK L SD+++ +TL++MYS C + +EA
Sbjct: 604 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA 663
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMD 238
+KIF M++ENVKPN T + VL A + + + H + G +E + ++D
Sbjct: 664 LKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVD 723
Query: 239 AYCKCKFVSRAWDLFVKMLF 258
+ VS+A +L M F
Sbjct: 724 IMGRSGQVSKALELIEGMPF 743
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 31/195 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-- 137
LVF ++ + + N+I+ + + + M+ G+ PD F + S+ K+CA
Sbjct: 432 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQ 491
Query: 138 -IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ ++H++ IK L DSF+ LI+MYS C ++
Sbjct: 492 ALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 551
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
Q +EA K F +M V P+ T +L A + K++H + + S
Sbjct: 552 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 611
Query: 229 HVELKTTLMDAYCKC 243
+ +TL+D Y KC
Sbjct: 612 DAYISSTLVDMYSKC 626
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + + + NS++ GY + H + + +M G + DR F + KSC+ +
Sbjct: 130 LFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLED 189
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
Q+H A+K G D + L++MY+ C LD
Sbjct: 190 HGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAG 249
Query: 175 --QPDE---AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q D+ +++F M+ V + T +V + A LR ++H ++ F +
Sbjct: 250 CVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTD 309
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
V + T +D Y KC +S A LF
Sbjct: 310 VVIGTATLDMYMKCNNLSDAQKLF 333
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 48/259 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTCNSIV 97
S +R Q+H L+T D D +++ +F+ + N + + N+I+
Sbjct: 289 SALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAII 348
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLA 154
GY + EA + + GL D F++CA I + Q+H ++K
Sbjct: 349 VGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQ 408
Query: 155 SDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRM 186
S+ + N +++MY C L ++ + +F M
Sbjct: 409 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 468
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
++P+ T +VL A A + L +H + +S + L+D Y KC +
Sbjct: 469 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMM 528
Query: 247 SRAWDLFVKM----LFPWN 261
+A L ++ + WN
Sbjct: 529 EKAEKLHDRLAEQTVVSWN 547
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 109/274 (39%), Gaps = 75/274 (27%)
Query: 58 QIHAQMLRTSLFFDP------------CAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
+IH + + + DP C RLVF ++S + T ++++ GY
Sbjct: 145 EIHGVLAKLDFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGG 204
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHN 161
+A + EM + PD+ + ++ +CA ++ K++H I+ A D L +
Sbjct: 205 HFDDALQLFEEMRSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLES 264
Query: 162 TLINMYSS---------------------------------------------------C 170
LI++Y+ C
Sbjct: 265 GLISLYAGCGCMDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLIC 324
Query: 171 WCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
W + DQP EA+ +F M+ ++P+ VT+++V++A A L KR+H VD
Sbjct: 325 WSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVD 384
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++GF + + L+D Y KC + A +F KM
Sbjct: 385 KNGFGKALSVNNALIDMYAKCGCLEAARAVFEKM 418
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 47/247 (19%)
Query: 56 LKQIHAQMLRTSL--------------FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYT 101
LKQ+HAQ+LR++L +Y + VF+ I P N ++R +
Sbjct: 41 LKQVHAQILRSNLSPSIILKLILSSSSSSISSLNYALS-VFTHIPTPHPTLSNKLLRALS 99
Query: 102 NKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDS 157
+ L Y ++ GL D+F FP + K+ A I ++H K D
Sbjct: 100 RSSKPETVLLVYQKIREDGLFGLDKFSFPFILKAAAKIAALNDGMEIHGVLAKLDFYKDP 159
Query: 158 FLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIE 189
FL L+ MY C + + D+A+++F M
Sbjct: 160 FLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEMRSS 219
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NV+P+ + L +++A ARA++L K VH + E+ F L++ L+ Y C + A
Sbjct: 220 NVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCMDMA 279
Query: 250 WDLFVKM 256
+LF M
Sbjct: 280 KELFTNM 286
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RL+F+Q+ + + ++ GY + EA ++EM G+ PD S+ +CA +
Sbjct: 311 RLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHL 370
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
V K++H K G ++N LI+MY+ C CL+
Sbjct: 371 GVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMI 430
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTL 198
+ A+ F++M+ ENV+PNAVT
Sbjct: 431 NAFAIHGDANSALNYFHQMKEENVEPNAVTF 461
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F DP + + V + S +N +Y NSI+R T+ L EA Y E L PD + F
Sbjct: 120 FRDPTSSFSVFRLASPSNN--VYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTF 177
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------- 176
PS+ +CA D + K +H + + G SD ++ N LI+MY LD+
Sbjct: 178 PSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 237
Query: 177 -------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+EA++I+YR V P++ T+ +VL A + +
Sbjct: 238 RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 297
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
H +++ G V + L+ YCK + +F KM+ WN
Sbjct: 298 HGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN 345
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F ++ + N+++ GY+ L+ E+ + EM+ Q PD S+ ++C
Sbjct: 330 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHL 388
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQP------ 176
D+ K +H I G D+ N LINMY+ C C D
Sbjct: 389 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 448
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
DEA+K+F M+ + VKP++VT V +L+ + DL K +H + + GF
Sbjct: 449 NVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN 507
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S++ + TL+D Y KC + + +F M + WN
Sbjct: 508 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 545
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 36/241 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF---MFPSLFKSCAD 137
VFS + + NS++ Y EA + +M+ + PD M S+ D
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGD 490
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------ 171
+ + K+LH K G S+ + NTL++MY+ C W
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 550
Query: 172 CLDQPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
C+ D +++ RM E V P+ T++++L + R K +H C+ + G S
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 610
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289
V + L++ Y KC + ++ +F L + W +A + G+ G A + G
Sbjct: 611 VPVGNVLIEMYSKCGSLRNSFQVF--KLMKTKDVVTW--TALISACGMYGEGKKAVRAFG 666
Query: 290 P 290
Sbjct: 667 E 667
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ ++ + ++P+ T +V+ A A D K +H V GF S + + L+
Sbjct: 157 EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALI 216
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D YC+ + +A +F +M + WN+
Sbjct: 217 DMYCRFNDLDKARKVFEEMPLRDVVSWNS 245
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 48/262 (18%)
Query: 43 CLVSLEKC-STMRELKQIHAQMLRTSLF-FDPCADYHVRL--------------VFSQIS 86
C+ ++ C S+ +LKQIHA +R + +P + H+ +F+QI
Sbjct: 37 CISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQ 96
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA---DIYVEK 142
P I+T N+++RG+ A + +M ++PD FP LFK+ A D+ + +
Sbjct: 97 APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYS---------------------------SCWCLD- 174
+HS ++ G S F+ N+L++MYS + + L+
Sbjct: 157 GIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNG 216
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
P+EA+ ++ M E V+P+ T+V++L+A L +RVH + + G +
Sbjct: 217 MPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASN 276
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC A +F +M
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEM 298
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 51/285 (17%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L++C+ +R L+Q +HA +L++ + + C R VF I + I
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ +++ + N + EA+ Y M + G PD+ F SL + + + V +++H +
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHME 222
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------WCL--------DQPDEA 179
K GL + + +L+ MY+ C W L Q D A
Sbjct: 223 IAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++ +M+ V PN +T ++L L K+VH+ + +SG+ + + L+
Sbjct: 283 LELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITM 342
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
YCKC + A LF + P + W +A V +G H A
Sbjct: 343 YCKCGGLKEARKLFGDL--PHRDVVTW--TAMVTGYAQLGFHDEA 383
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F + + + T ++V GY H EA + M QG+ PD+ F S SC+
Sbjct: 351 EARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCS 410
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
+ K +H Q + G + D +L + L++MY+ C +D
Sbjct: 411 SPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTA 470
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA++ F +M+ + +KP+ VT +VL+A
Sbjct: 471 MITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSA 509
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 44/244 (18%)
Query: 57 KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
+++H ++ + L +P C D +++F ++ + T ++ GY +
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-IYVE--KQLHSQAIKFGLASDSFLH 160
A +M + P++ + S+ + C + +E K++H I+ G + ++
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
N LI MY C L + DEAI +F RM+ + +K
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIK 396
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ +T + LT+ + L+ K +H+ + +G+ V L++ L+ Y KC + A +
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLV 456
Query: 253 FVKM 256
F +M
Sbjct: 457 FNQM 460
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 46 SLEKCST---MRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPT 89
+L CS+ ++E K IH Q++ D C RLVF+Q+S
Sbjct: 405 ALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERN 464
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV----EKQLH 145
+ +++ G EA ++ +M QG+ PD+ F S+ +C + + K
Sbjct: 465 VVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFR 524
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180
S + +G+ ++ +++ L++ + I
Sbjct: 525 SMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVI 559
>gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 468
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYV 140
++ ++ + NS++ GY +A Y M+ G +PD +L SC +
Sbjct: 201 EVGLRSVVSWNSMIAGYAYLEKRIDALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQ 260
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYS------SCWCL--------------------- 173
Q+HS I+FG S+ + NTLI+MYS S CL
Sbjct: 261 GMQVHSHGIRFGCDSEIHVANTLISMYSKFGDVYSARCLFDSMCNRSCVTWTSMISGYAE 320
Query: 174 -DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
DEA+K+F ME KP+ VT+++V++ + L K +H D + +V +
Sbjct: 321 KGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSNCLKHNVVV 380
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + AWDLF M
Sbjct: 381 CNALIDMYAKCGSIDDAWDLFNTM 404
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
TI NS +R N+N H+A + ++ +G+ P+ F FP + K+CA +++ + +H
Sbjct: 2 TINLFNSQIREAVNQNCAHKAISLFRQLKQKGIEPNNFTFPFILKACAKLSNLHYSQVIH 61
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD--------QPDEAIK---------------- 181
+ IK S+ F+ L++M C LD P +
Sbjct: 62 THVIKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKRDVTSWNAMLLGFAQLGFSE 121
Query: 182 ----IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+F M V P++VTL+ V A + +DL K VH G + V + T +
Sbjct: 122 RVFCMFREMRFAGVFPDSVTLMGVSGAISCMKDLELAKSVHSFGIRIGIHNDVSVANTWI 181
Query: 238 DAYCKCKFVSRAWDLF------VKMLFPWNN 262
Y KC ++ A +F ++ + WN+
Sbjct: 182 SLYAKCYDLAMAESVFNGIEVGLRSVVSWNS 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 46/261 (17%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLF---------FDPCADYH----VRLVFSQISNP 88
F L + K S + + IH ++++ + D C H VF ++
Sbjct: 43 FILKACAKLSNLHYSQVIHTHVIKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKR 102
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR--FMFPSLFKSC-ADIYVEKQLH 145
+ + N+++ G+ F + EM G+ PD M S SC D+ + K +H
Sbjct: 103 DVTSWNAMLLGFAQLGFSERVFCMFREMRFAGVFPDSVTLMGVSGAISCMKDLELAKSVH 162
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
S I+ G+ +D + NT I++Y+ C+ L +
Sbjct: 163 SFGIRIGIHNDVSVANTWISLYAKCYDLAMAESVFNGIEVGLRSVVSWNSMIAGYAYLEK 222
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+A+ + RM + P+ T+V +L++ + +R +VH G S + + T
Sbjct: 223 RIDALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANT 282
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+ Y K V A LF M
Sbjct: 283 LISMYSKFGDVYSARCLFDSM 303
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 31/168 (18%)
Query: 58 QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
+IH S++ Y R +F + N + T S++ GY K EA ++ M
Sbjct: 276 EIHVANTLISMYSKFGDVYSARCLFDSMCNRSCVTWTSMISGYAEKGNMDEALKLFNAME 335
Query: 118 VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
G PD S+ C + V K +H A L + + N LI+MY+ C +D
Sbjct: 336 AAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSNCLKHNVVVCNALIDMYAKCGSID 395
Query: 175 Q--------PD--------------------EAIKIFYRMEIENVKPN 194
PD E++ +FY+M +KPN
Sbjct: 396 DAWDLFNTMPDRTVVTWTTMIAGCALNGLFKESLDLFYQMIDFGLKPN 443
>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
Length = 338
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF QI PT + N ++RG + +A FY + G++PD FP + K+CA I
Sbjct: 21 VFDQIKAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 80
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+Q+H+ K GL SD F+ N+LI++Y++C L
Sbjct: 81 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 140
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++ + + +F M+ E VK + VT++ V++A R D + + +++
Sbjct: 141 YSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVD 200
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L TL+D + + + A +F M
Sbjct: 201 VYLGNTLVDYFGRRGQLQSAEKVFFNM 227
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNP 88
F L + + + + E +Q+H + + L D C + + R VF ++
Sbjct: 70 FILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 129
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ + NS++ GY+ N + + M +G+ D+ + +C D + +
Sbjct: 130 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 189
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
+ + D +L NTL++ + Q A K+F+ M++ N+ VT+ ++ A
Sbjct: 190 RYIEDYCIEVDVYLGNTLVDYFGR---RGQLQSAEKVFFNMKVRNI----VTMNAMIAAY 242
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A+ +D+ + +++ + + S ++++ Y + S A ++F +M
Sbjct: 243 AKGQDIVSARKIFDQIPKKDLISW----SSMISGYSQANHFSDALEIFRQM 289
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 74 ADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
ADY VR + +Y N++V + + A + M V+ ++ M + K
Sbjct: 185 ADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAK 244
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
DI +++ Q K L S S ++I+ YS + +A++IF +M+ VKP
Sbjct: 245 G-QDIVSARKIFDQIPKKDLISWS----SMISGYSQA---NHFSDALEIFRQMQRAKVKP 296
Query: 194 NAVTLVNVLTARA 206
+A+ + +V+++ A
Sbjct: 297 DAIVIASVVSSCA 309
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 63 MLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
+LR+++ F A Y + + +N + N+++RG +K+ + A Y M ++
Sbjct: 42 ILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIV 101
Query: 123 PDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------- 170
PD F F + K+CA + ++ +HS K G D F+ ++ YS C
Sbjct: 102 PDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKV 161
Query: 171 -----------W------CLD--QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
W C++ + EA+ +F + ++P+ +V VL A AR DL
Sbjct: 162 FDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDL 221
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ + + +C+ E G +V + T+L+D Y KC + A +F M+
Sbjct: 222 ESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMV 267
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + + + ++ G EA + ++ GL PD F+ + ++CA D
Sbjct: 161 VFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGD 220
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + + GL+ + F+ +L++MY+ C +++
Sbjct: 221 LESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQG 280
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P EAI++F+ M NV+P+ +V L++ A L ++ F S+
Sbjct: 281 YASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSN 340
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
L T+L+D Y KC + A ++ M
Sbjct: 341 PVLGTSLIDFYAKCGSMEEALGVYKMM 367
>gi|302756495|ref|XP_002961671.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
gi|300170330|gb|EFJ36931.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
Length = 934
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
L+F + NS++ + + EA Y EM+ G +P R F ++ + + +
Sbjct: 162 LMFQSMEEWNTVAWNSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLE 221
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
K +H + G D + L+NMY C + +
Sbjct: 222 SLRHGKLVHDTLAEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVIS 281
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+E++++F +M++E +PN VTLV+VL+A + L T K +H+CV E+G+
Sbjct: 282 AHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEG 341
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
+ + ++ Y KC + AWD+F
Sbjct: 342 DLIVGNAIVSMYGKCGSLEDAWDVF 366
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 53/260 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPC-ADYHVRL------------VFSQISNPTI 90
L +CS ++L +QIHA + R+S DP ++ +++ VF Q+ ++
Sbjct: 12 LRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSV 71
Query: 91 YTC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQL 144
+++ Y A + +M ++G PDR ++F++C + + K++
Sbjct: 72 VNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKI 131
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQP 176
H+ SD L ++LI MY C L D+
Sbjct: 132 HA---YLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFIQHDRV 188
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+EA+++++ M P+ T + VL A + LR K VH + E+G V ++T L
Sbjct: 189 EEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVVVQTAL 248
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
++ Y KC V A ++F +M
Sbjct: 249 VNMYGKCGSVVEAVEVFDRM 268
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 39/216 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF ++ ++ TCN ++ + A + M+ +G+ D F S +C+
Sbjct: 365 VFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSALCACSGTSG 424
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PDEAIK-------- 181
+ + H++ ++ GL D F+ N L+NMY C ++ P++ ++
Sbjct: 425 LSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVRTWNAMILA 484
Query: 182 ------------IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+F M KP+ VT L A R LR VH + E+G S+
Sbjct: 485 YVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACYHPRFLRD---VHSLISETGI-SN 540
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++ L+ Y + + + +F K+ + WN
Sbjct: 541 TVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWN 576
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F DP + + V + S +N +Y NSI+R T+ L EA Y E L PD + F
Sbjct: 61 FRDPTSSFSVFRLASPSNN--VYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTF 118
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------- 176
PS+ +CA D + K +H + + G SD ++ N LI+MY LD+
Sbjct: 119 PSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 178
Query: 177 -------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+EA++I+YR V P++ T+ +VL A + +
Sbjct: 179 RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 238
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
H +++ G V + L+ YCK + +F KM+ WN
Sbjct: 239 HGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN 286
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F ++ + N+++ GY+ L+ E+ + EM+ Q PD S+ ++C
Sbjct: 271 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHL 329
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQP------ 176
D+ K +H I G D+ N LINMY+ C C D
Sbjct: 330 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 389
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
DEA+K+F M+ + VKP++VT V +L+ + DL K +H + + GF
Sbjct: 390 NVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN 448
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S++ + TL+D Y KC + + +F M + WN
Sbjct: 449 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 486
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 36/241 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF---MFPSLFKSCAD 137
VFS + + NS++ Y EA + +M+ + PD M S+ D
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGD 431
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------ 171
+++ K+LH K G S+ + NTL++MY+ C W
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 491
Query: 172 CLDQPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
C+ D +++ RM E V P+ T++++L + R K +H C+ + G S
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 551
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289
V + L++ Y KC + ++ +F L + W +A + G+ G A + G
Sbjct: 552 VPVGNVLIEMYSKCGSLRNSFQVF--KLMKTKDVVTW--TALISACGMYGEGKKAVRAFG 607
Query: 290 P 290
Sbjct: 608 E 608
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ ++ + ++P+ T +V+ A A D K +H V + GF S + + L+
Sbjct: 98 EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALI 157
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D YC+ + +A +F +M + WN+
Sbjct: 158 DMYCRFNDLDKARKVFEEMPLRDVVSWNS 186
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 71/295 (24%)
Query: 44 LVSLEKCSTMR-ELKQIHAQMLRTSLFFDPCADYHV--RL--------------VFSQIS 86
L+SL ST + L+QIHA +LRTSL + +H RL VFSQ
Sbjct: 14 LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEK 142
NPT+ CN+++R ++ E F + + +P + S C D+
Sbjct: 74 NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM---------------- 186
Q+H + G SDS L TL+++YS+C + +A K+F +
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTC---ENSTDACKVFDEIPKRDTVSWNVLFSCYL 190
Query: 187 -------------EIEN-----VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+++N VKP+ VT + L A A L K+VH +DE+G
Sbjct: 191 RNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSG 250
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPW---------NNYGQWAMSA 270
+ L TL+ Y +C + +A+ +F M + W N +G+ A+ A
Sbjct: 251 ALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEA 305
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKC---STMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L+ C ++R +Q+H ++L + L + C H R +F + +
Sbjct: 69 LQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNV 128
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N ++R Y + A Y M+ G+ PD F +P + K+CA D+ +++H +
Sbjct: 129 FLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQR 188
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
D F+ +++MY+ C C+D +P EA
Sbjct: 189 VSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEA 248
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ + M + P TLV+ ++A A A L + +H GF +LKT+L+D
Sbjct: 249 LALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDM 308
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y K +V A LF ++ L WN
Sbjct: 309 YAKSGWVQVARVLFEQLMKRELVSWN 334
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 39/175 (22%)
Query: 130 SLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------- 170
S+ +SC + +QLH + + GL D+ L L+++Y++C
Sbjct: 67 SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126
Query: 171 -----------WCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVH 218
+ + P EA YR +E V+P+ T VL A A DL T + VH
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN----YGQ 265
+ V + + V + ++D Y KC V A +F V+ WN+ YGQ
Sbjct: 187 QRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQ 241
>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
Length = 1108
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
VF I + + ++ Y + + +A + EM++Q L P+ F + +C +
Sbjct: 188 VFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLR 247
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--WC--------------LD--------- 174
LHS + GL D N LINMY C W LD
Sbjct: 248 DGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMIS 307
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGFW 227
+ +A+ IF R+ +E ++PN+VTL+ +L A A D ++ H + ESG+
Sbjct: 308 ASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYL 367
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
V + ++ Y KC F S AW +F ++ + WN
Sbjct: 368 RDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNT 407
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 31/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ + + + ++V E + M ++G+IPD+F + +C
Sbjct: 590 QARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCL 649
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL 173
D + + K +H+ + GL +D + N L+NMYS+C W +
Sbjct: 650 DSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNI 709
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+ +F M++E VKP+ +T L + + K H ESG
Sbjct: 710 MSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESG 769
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
S V + T L+ Y KC + A LF
Sbjct: 770 LDSDVSVATGLVKLYAKCGKLDEAISLF 797
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 99/262 (37%), Gaps = 57/262 (21%)
Query: 77 HVRLVFSQISNPT--IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
LVF ++ P+ + T N ++ Y + EAF EM+ G++PD F S+ S
Sbjct: 491 EAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSS 550
Query: 135 CADIYVEKQLHSQAIKFGLASDSF----LHNTLINMYSSCWCLDQP-------------- 176
C Y ++ +Q ++ + + L LI+M+ C L+Q
Sbjct: 551 C---YCSQE--AQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVS 605
Query: 177 --------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
E +F RM++E V P+ TL L + L K +H CV
Sbjct: 606 WTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVT 665
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLV 278
E G + + ++ L++ Y C A F M L WN MSA GL
Sbjct: 666 EIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWN-----IMSAAYAQAGLA 720
Query: 279 G------RHSTAHQISGPCPKK 294
RH Q+ G P K
Sbjct: 721 KEAVLLFRH---MQLEGVKPDK 739
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 50/273 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CAD----YHVRLVFSQISN 87
+ +L C+++R+ +H+ + L FDP C D Y V +
Sbjct: 237 ITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQE 296
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA----DIYVEKQ 143
+ + N+++ H +A + + ++G+ P+ ++ + A D ++
Sbjct: 297 LDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARK 356
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC--------------WCLD--------------- 174
H + + G D + N +I+MY+ C W D
Sbjct: 357 FHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRK 416
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWSHVELK 233
+ + F+ M + + PN V+ + +L A + + L +++H + + +
Sbjct: 417 SFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVA 476
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
T L+ Y KC ++ A +F +M P + W
Sbjct: 477 TMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTW 509
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 55/251 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCA--- 136
+FS++ + + +++ AF + M+++ P+ + ++ +CA
Sbjct: 82 IFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141
Query: 137 DIYVEKQLHSQAIKFGLASDS----FLHNTLINMYSSCWC--------LDQPD------- 177
D+ + + +H+ + GL +S + N +INMY+ C L P+
Sbjct: 142 DLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWT 201
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+A++IF M ++ + PN +T + L A LR +H + E
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGA---CTSLRDGTWLHSLLHE 258
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-------LFPWNNYGQWAMSATVGPQG 276
+G L++ Y KC A+ +F M L WN +SA+V
Sbjct: 259 AGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAM----ISASVEA-- 312
Query: 277 LVGRHSTAHQI 287
GRH A I
Sbjct: 313 --GRHGDAMAI 321
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF +I + + S++ G + L +++M + P + ++ +C+
Sbjct: 187 RKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSAL 246
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
++ + +H IK GL S+SF+ L++MY C L+
Sbjct: 247 IGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMI 306
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
P +A+++F + N+ PN+VT+ VL+A A+ RDL + +H + G
Sbjct: 307 VGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLV 366
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
+ + L+D Y KC+ VS A +F K + WN+
Sbjct: 367 EYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNS 405
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 51/276 (18%)
Query: 33 NINSQYQAHFCLVSLEKCSTMRELKQIHAQML-------------RTSLF--FDPCADY- 76
N+ A L L C T+ L+ +HA++L RT L + D
Sbjct: 22 NLARALSAGDLLRLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLA 81
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP---DRFMFPSLFK 133
R+VF P Y+ ++ H EA + +M + P D F+ K
Sbjct: 82 SARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALK 141
Query: 134 SC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMY----------------------- 167
+C AD +LH A+K G +D F+ N+L++MY
Sbjct: 142 ACIRSADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVS 200
Query: 168 -----SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
S C + + +F +M +NV P+ T+ V+TA + L + +H V
Sbjct: 201 WTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVI 260
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ G S+ + L+D Y KC + A +F ++ +
Sbjct: 261 KQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSY 296
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 36/203 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F ISN + NS++ GY N+ ++A + + +M ++G PD + D
Sbjct: 391 IFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGD 450
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
+ + K H A+K S+ ++ L+N+Y+ C WC
Sbjct: 451 LLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGG 510
Query: 174 --DQPDEA--IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q D A I +F M + V PN V ++L+ + + KR + + H
Sbjct: 511 YGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQ-----H 565
Query: 230 VELKTTLMDAYCKCKFVSRAWDL 252
+ ++ C ++RA +L
Sbjct: 566 FNITPSMKHYACMVDVLARAGNL 588
>gi|168044100|ref|XP_001774520.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674075|gb|EDQ60588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 350
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 31/219 (14%)
Query: 66 TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
T ++F + VF ++ N I N+++ GY L +A + +M + GL PD
Sbjct: 79 TCMYFRCGSALDAHRVFKRVQNRDIIVWNAMIEGYCQAGLRDKALEMFKDMKIAGLAPDV 138
Query: 126 FMFPSLFKSC-ADIYVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------- 173
F S+ KSC ++++ KQLH I+ G + L+NMY C L
Sbjct: 139 ASFLSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVNMYCRCESLLDARKMFNK 198
Query: 174 -------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
D +EA +F M ++PN +T + +L A R L+
Sbjct: 199 LPRKDIGLWTTMIAGYAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLKACTRPEFLQKG 258
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K +H + +G S ++ T L++AY KC+ + A +F
Sbjct: 259 KWLHNHIRCAGLDSDEKVGTALINAYSKCRSLVDARKVF 297
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 34/256 (13%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHS 146
+ +CN+ + + EA F+ M + + P+R F SL F+ D+ +++H+
Sbjct: 2 LISCNAAISRLAQQGRRGEALAFFFRMQDEHVRPNRVTFLSLLKAFRGPGDLESGRRVHN 61
Query: 147 QAIKFGLASDSFLHNTLINMYSSCW-CLDQ---------------------------PDE 178
++ L SD + L MY C LD D+
Sbjct: 62 FILERQLESDVRVGTALTCMYFRCGSALDAHRVFKRVQNRDIIVWNAMIEGYCQAGLRDK 121
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++F M+I + P+ + +++L + + L K++HK + ESGF V ++T L++
Sbjct: 122 ALEMFKDMKIAGLAPDVASFLSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVN 181
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA-HQISGPCPKKAHK 297
YC+C+ + A +F K+ P + G W Q G + A Q + +K
Sbjct: 182 MYCRCESLLDARKMFNKL--PRKDIGLWTTMIAGYAQTDHGEEAFALFQAMRDTGLQPNK 239
Query: 298 LFFFSMLKKVHVPGVL 313
+ F ++LK P L
Sbjct: 240 MTFLALLKACTRPEFL 255
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F+++ I +++ GY + EAF + M GL P++ F +L K+C
Sbjct: 192 ARKMFNKLPRKDIGLWTTMIAGYAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLKACTR 251
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ K LH+ GL SD + LIN YS C L
Sbjct: 252 PEFLQKGKWLHNHIRCAGLDSDEKVGTALINAYSKCRSLVDARKVFDNLCTRNVISWTAL 311
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+ +EA+ +F +M+ E V+PN VT V+ A
Sbjct: 312 IAAYSRNDRAEEALDLFEQMKREGVQPNEVTRNTVVKA 349
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 46/256 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP------CADY-------HVRLVFSQISNPTIYTC 93
L C T +K+ HAQ++ DP Y H R VF +S P ++ C
Sbjct: 27 LNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCC 86
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
N +++ Y N + EA Y M +G+ P+ + +P + K+C K+ +H A+K
Sbjct: 87 NVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVK 146
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G+ D F+ N L+ Y+ C ++ D+AI +
Sbjct: 147 CGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILL 206
Query: 183 FYRM-EIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
FY M E+V P+ T V VL A A+A D+ +H + ++ + T L+ Y
Sbjct: 207 FYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLY 266
Query: 241 CKCKFVSRAWDLFVKM 256
C +V A +F ++
Sbjct: 267 SNCGYVRMARAIFDRI 282
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 19 DNSPLINLDNINNNNINSQYQAHFCLV--SLEKCSTMRELKQIHAQMLRTSLFFDPCADY 76
D++ L+ D + + ++ A F V + + + + IH +++T + D
Sbjct: 201 DDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGT 260
Query: 77 HV-------------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP 123
+ R +F +IS+ ++ ++I+R Y L EA + +++ GL P
Sbjct: 261 GLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGAGLRP 320
Query: 124 DRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180
D +F L +C+ + +Q L + +G+A + ++++ L++ E I
Sbjct: 321 DGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGRAGDLEKAVEFI 380
Query: 181 K 181
+
Sbjct: 381 Q 381
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYV 140
+++ T+ + N+I+ G++ + EA + +M+ G+ PD F + ++ +CA+ + +
Sbjct: 474 RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVEL 533
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
KQ+H+Q IK L SD+++ +TL++MYS C +
Sbjct: 534 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 593
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVE 231
+EA+KIF M++ENVKPN T + VL A + + + H + G +E
Sbjct: 594 HGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLE 653
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ ++D + VS+A +L M F
Sbjct: 654 HYSCVVDIMGRSGQVSKALELIEGMPF 680
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 31/195 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-- 137
LVF ++ + + N+I+ + + + M+ G+ PD F + S+ K+CA
Sbjct: 369 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQ 428
Query: 138 -IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ ++H++ IK + DSF+ LI+MYS C ++
Sbjct: 429 ALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 488
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
Q +EA K F +M V P+ T +L A + K++H + + S
Sbjct: 489 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 548
Query: 229 HVELKTTLMDAYCKC 243
+ +TL+D Y KC
Sbjct: 549 DAYISSTLVDMYSKC 563
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 47 LEKCS---TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L+ C+ T+ KQIHAQ+++ L + C + +L+F + N
Sbjct: 522 LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF 581
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLH 145
T N++V GY L EA + M ++ + P+ F ++ ++C + VEK LH
Sbjct: 582 VTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 637
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 58/237 (24%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTI 90
++CS + L KQ HA+M+ T + C+D VF +
Sbjct: 49 FQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDT 108
Query: 91 YTCNSIVRGYTNKN---LHHEAF------------LFYHEMIVQGLIPDRFMFPSLFKSC 135
+ N+++ GY + + + F LF M G + DR F + KSC
Sbjct: 109 VSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSC 168
Query: 136 ADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--EAIKIFYRMEIEN 190
+ + Q+H A+K G D + L++MY+ C C+ D +++F M+
Sbjct: 169 SSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC-CVQNDDLRGGLELFKEMQKAG 227
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
V ++H ++ F + V + T +D Y KC +S
Sbjct: 228 V---------------------GALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLS 263
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYV 140
+++ T+ + N+I+ G++ + EA + +M+ G+ PD F + ++ +CA+ + +
Sbjct: 490 RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVEL 549
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
KQ+H+Q IK L SD+++ +TL++MYS C +
Sbjct: 550 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 609
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVE 231
+EA+KIF M++ENVKPN T + VL A + + + H + G +E
Sbjct: 610 HGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLE 669
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ ++D + VS+A +L M F
Sbjct: 670 HYSCVVDIMGRSGQVSKALELIEGMPF 696
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + + + NS++ GY + H + + +M G + DR F + KSC+ +
Sbjct: 130 LFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLED 189
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
Q+H A+K G D + L++MY+ C LD
Sbjct: 190 HGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAG 249
Query: 175 --QPDE---AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q D+ +++F M+ V + T +V + A LR ++H ++ F +
Sbjct: 250 CVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTD 309
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
V + T +D Y KC +S A LF
Sbjct: 310 VVIGTATLDMYMKCNNLSDAQKLF 333
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 35/196 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
L + I N+I+ Y EA L + EM+ + + + + ++ +
Sbjct: 387 LSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE-- 444
Query: 140 VEKQL----HSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
EK L H++ IK L DSF+ LI+MYS C ++
Sbjct: 445 -EKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAII 503
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q +EA K F +M V P+ T +L A + K++H + +
Sbjct: 504 SGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQ 563
Query: 228 SHVELKTTLMDAYCKC 243
S + +TL+D Y KC
Sbjct: 564 SDAYISSTLVDMYSKC 579
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 47 LEKCS---TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L+ C+ T+ KQIHAQ+++ L + C + +L+F + N
Sbjct: 538 LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDF 597
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLH 145
T N++V GY L EA + M ++ + P+ F ++ ++C + VEK LH
Sbjct: 598 VTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 653
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 43/233 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTCNSIV 97
S +R Q+H L+T D D +++ +F+ + N + + N+I+
Sbjct: 289 SALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAII 348
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLA 154
GY + +GL D F++CA I + Q+H ++K
Sbjct: 349 VGYARSD--------------KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQ 394
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR-ARDLRT 213
S+ + N +++MY C L EA +F M V +AV+ ++ A + + +T
Sbjct: 395 SNICVANAILDMYGKCGAL---VEACLVFEEM----VSRDAVSWNAIIAAHEQNGNEEKT 447
Query: 214 VKR-VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +H + +S + L+D Y KC + +A L ++ + WN
Sbjct: 448 LSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWN 500
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTC 93
L C L QI AQ++ L F C+ + H R +F +I P T
Sbjct: 19 LRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATW 78
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N++ RGY H + + + E+ +P+ F FP + KSC + +++H A K
Sbjct: 79 NAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATK 138
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G S+SF+ +LI+MYS C+ ++A K+F M NV V ++ D
Sbjct: 139 HGFKSNSFVATSLIDMYSKKGCV---EDAYKVFGEMHERNV----VVWTAIINGYILCGD 191
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +R+ E V + + L+ Y + K ++ A +LF KM
Sbjct: 192 VVSGRRLFDLAPE----RDVVMWSVLISGYIESKNMAAARELFDKM 233
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 32/156 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY 139
VF ++ +++ N ++ GY L E + M+V+G +IP+ F ++ +C+ +
Sbjct: 260 VFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLG 319
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD--------- 177
+ K +H A G + F+ N LI+MY+ C CLD+ D
Sbjct: 320 ALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIIN 379
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F RM+ E +P+ VT V +L+A
Sbjct: 380 GLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSA 415
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 178 EAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
E ++ F RM +E V PN TLV VL+A +R L K VH + G+ ++ + L
Sbjct: 287 ETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVL 346
Query: 237 MDAYCKCKFVSRAWDLF----VKMLFPWN 261
+D Y KC + A +F K + WN
Sbjct: 347 IDMYAKCGVIENAVVVFNCLDRKDIISWN 375
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 84/302 (27%)
Query: 50 CSTMRELKQIHAQMLRTSL---------FFDPCA-------DYHVRLVFSQISNPTIYTC 93
CS+M E+KQ H+ +LR L F C+ +Y ++L F+ + NP +
Sbjct: 12 CSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKL-FTTLPNPDTFLY 70
Query: 94 NSIVRGYTN-KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFG 152
N++ + + + + LFY M+ + P+ F FPSL ++C KQLH+ +KFG
Sbjct: 71 NTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLHAHVLKFG 130
Query: 153 LASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFY 184
D++ N LI++Y + LD DEA ++F
Sbjct: 131 FGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFE 190
Query: 185 RMEIE--NVKPNAVTLVNVLTARARA-----RDLRTVKR--------------------- 216
M + +V NA+ V R R R +R K+
Sbjct: 191 LMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGAL 250
Query: 217 -----VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN-NYGQW 266
+HK V+++G +L TT++D YCKC + +A+ +F VK + WN G +
Sbjct: 251 EQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGF 310
Query: 267 AM 268
AM
Sbjct: 311 AM 312
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 34/237 (14%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFD----------------PCADYHVRLVFSQISNPTIY 91
E+ ++ E++Q HA ML+T LF D P + + ++I +P +
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
T NS++R Y N + A + EM++ + PD++ F + K+CA +Q+H
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
IK GL +D F+ NTL+N+Y + A K+ RM + +AV+ ++L+A
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEI---ARKVLDRMPVR----DAVSWNSLLSAYLEK 219
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + + ++E +VE ++ Y V A ++F V+ + WN
Sbjct: 220 GLVDEARALFDEMEE----RNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWN 272
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 26/271 (9%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNIN----SQYQAHFCLVSLEKCSTMREL 56
+ +P H + A ++ ++P + L + +Y F L + E
Sbjct: 100 IGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEG 159
Query: 57 KQIHAQMLRTSLFFD-----PCADYHVRLVFSQISNPTI--------YTCNSIVRGYTNK 103
+QIH +++ L D + + R + +I+ + + NS++ Y K
Sbjct: 160 RQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEK 219
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
L EA + EM + + FM + ++ S ++ D N +
Sbjct: 220 GLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVR-----DVVSWNAM 274
Query: 164 INMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+ Y+ C + E +++F +M + KP+ TLV+VL+A A L + VH +D
Sbjct: 275 VTAYAHVGCYN---EVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYID 331
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ G L T L+D Y KC + +A ++F
Sbjct: 332 KHGIEIEGFLATALVDMYSKCGKIDKALEVF 362
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 32/160 (20%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSC 135
+ VF + + + N++V Y + ++E +++M+ PD F S+ +C
Sbjct: 255 EAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314
Query: 136 ADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE-------------- 178
A + Q +H K G+ + FL L++MYS C +D+ E
Sbjct: 315 ASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWN 374
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A++IF M E KPN +T + VL+A
Sbjct: 375 SIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSA 414
>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
Length = 644
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 41/242 (16%)
Query: 53 MRELKQIHAQM-------LRTSLF--FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTN 102
+ + K+IHA + L +SL + C L+F + NS++ +
Sbjct: 115 LEDGKKIHAYLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQ 174
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFL 159
+ A Y EM+ G +P R F ++ + + + K +H ++ G D +
Sbjct: 175 HDRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVV 234
Query: 160 HNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENV 191
L+NMY C + + +E++++F +M++E
Sbjct: 235 QTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGN 294
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
+PN VTLV+VL+A + L T K +H+CV E+G+ + + ++ Y KC + AWD
Sbjct: 295 RPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWD 354
Query: 252 LF 253
+F
Sbjct: 355 VF 356
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 53/260 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPC-ADYHVRL------------VFSQISNPTI 90
L +CS ++L +QIHA + R+S DP ++ +++ VF Q+ ++
Sbjct: 2 LRQCSRSKDLARGRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSV 61
Query: 91 YTC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQL 144
+++ Y A + +M ++G PDR ++F++C + + K++
Sbjct: 62 VNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKKI 121
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQP 176
H+ SD L ++LI MY C L D+
Sbjct: 122 HAY---LSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRV 178
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+ A+++++ M P+ T + VL A + LR K VH + E+G V ++T L
Sbjct: 179 EAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQTAL 238
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
++ Y KC V A ++F +M
Sbjct: 239 VNMYGKCGSVVEAVEVFDRM 258
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 113/283 (39%), Gaps = 80/283 (28%)
Query: 51 STMRELKQIHAQMLRTSL---------FFDPCADY-HVRLVFSQISN---PTIYTCNSIV 97
+ ++ LKQ H M+ T L F + C++ H+R +S ++ P Y N+++
Sbjct: 26 TNLKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMI 85
Query: 98 RGYT---NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKF 151
R + +N H A Y + PD F FP + K +D++ +Q+H QA+ F
Sbjct: 86 RALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVF 145
Query: 152 GLASDSFLHNTLINMYSS------------------------------------------ 169
G S + LI MYSS
Sbjct: 146 GFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLL 205
Query: 170 ----CWCLD---------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
CW + + EAI++F RM +ENV P+ VTL+ VL+A A
Sbjct: 206 EMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGS 265
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L +R+ VD G V L ++D Y K +++A ++F
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVF 308
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 33/151 (21%)
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVE 141
+ N +TC ++ GY EA + M+++ + PD ++ +CAD + +
Sbjct: 212 VRNAVSWTC--VISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELG 269
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+++ S G+ L+N +I+MY+ + +
Sbjct: 270 ERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATH 329
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F RM VKPN VT + +L+A
Sbjct: 330 GHGAEALVMFDRMVKAGVKPNDVTFIAILSA 360
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ P + N+++ G+ F+ M QGLIPDRF F + C +
Sbjct: 158 VFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTEN 217
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------------------S 169
+ +LH Q +K L S F+ N +I MYS +
Sbjct: 218 LKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAA 277
Query: 170 CWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C D + +++F M E NV+P+ T + L A A + K++H + + +
Sbjct: 278 CSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQ 337
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGR 280
+ + L++ Y KC + A+D+F KM L WN + A G GL R
Sbjct: 338 DLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNT-----IIAGFGNHGLGER 388
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
L CS + L+ +HA +L+T D HV R VF ++ +
Sbjct: 10 LHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNL 69
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ ++++ GY A Y +M L+P+ ++F S+ +CA + + +++HS+
Sbjct: 70 VSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSR 126
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
++KFG S SF+ N+LI+MY C +Q +A+ +F +PN V+ ++T
Sbjct: 127 SLKFGYESISFVSNSLISMYMKC---NQCSDALSVF----TNTPEPNCVSYNALITGFVE 179
Query: 208 ARDLRTVKRVHKCVDESGF 226
+ L K + + G
Sbjct: 180 NQQLERGLEFFKLMRQQGL 198
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 25/194 (12%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPT 89
L + ++M KQIHA ++RT L+ D C Y +FS++ +
Sbjct: 311 LAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYD-IFSKMVHHN 369
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQ 147
+ + N+I+ G+ N L A + +M G+ PD F L +C A + + QL+
Sbjct: 370 LVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFN 429
Query: 148 AIK--FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
+++ +G+A D + LI+M L++ +E ++ F + V LV++L+A
Sbjct: 430 SMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKF------PFWNDPVVLVSLLSAS 483
Query: 206 ARARDLRTVKRVHK 219
D+ +R+ K
Sbjct: 484 RLHGDVVIGERLAK 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 50/265 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQ-------------ISNPTI 90
L C+T LK ++H Q ++ +L P + ++S+ I +
Sbjct: 209 LGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDV 268
Query: 91 YTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ N+++ ++ + H + +F H + PD F F S +CA + KQ+H+
Sbjct: 269 ISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHA 328
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
++ L D + N L+NMY+ C C+ +
Sbjct: 329 HLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGER 388
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLM 237
A+++F +M ++P++VT + +LTA A + + ++E+ G +E + L+
Sbjct: 389 AVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLI 448
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNN 262
D + ++ A + K F WN+
Sbjct: 449 DMLGRAGRLNEAEEYMRKFPF-WND 472
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F +IS P++ T N+++ GY + LH + + M Q + PDR + +C+
Sbjct: 371 ARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSR 430
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW------------------CLDQ- 175
+ + KQ+HS ++K L +D F+ + LI+MYS C C +
Sbjct: 431 LGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSM 490
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA F +M + P + +++ + AR + +++H V + G+
Sbjct: 491 ISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGY 550
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+V + ++L+D Y KC + A F VK + WN
Sbjct: 551 DQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWN 589
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 47/235 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R + ++ + + N+++ + EA Y M+ +GL P F S+ +C
Sbjct: 95 ARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGA 154
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ ++ H A+K GL + F+ N L+ MY+ C +
Sbjct: 155 VAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARAR--------ARDLRTVKRVH 218
D+A+++F RM ++ + V + +VL A A+ AR +R + +H
Sbjct: 215 MGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIH 274
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
V GF S + +L+D Y K + A +F M + WN YGQ
Sbjct: 275 ALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQ 329
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 47/207 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQ----MLRTSLF--------FDPCADYHV-RLVFSQISNP 88
V L CS + L KQ+H+ +L +F + C + +++F+ ++
Sbjct: 423 VILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTER 482
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+ NS++ G +L+ EAF F+ +M G+ P + S+ SCA I +Q+H
Sbjct: 483 DVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIH 542
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+Q +K G + ++ ++LI+MY+ C +D +
Sbjct: 543 AQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGE 602
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++F M KP++VT + VLT
Sbjct: 603 KAVELFEYMLTTKQKPDSVTFIAVLTG 629
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF +S+ +I + N +V GY + A M G P+ + ++ SC D
Sbjct: 308 VFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARD 367
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ + + + K + + NTL++ Y + + I++F RM+ +NV+P+ T
Sbjct: 368 VPSARAMFDKISKPSVTT----WNTLLSGYGQ---EELHQDTIELFRRMQHQNVQPDRTT 420
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM- 256
L +L+ +R L K+VH + + + + + L+D Y KC V A +F M
Sbjct: 421 LAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMT 480
Query: 257 ---LFPWNN 262
+ WN+
Sbjct: 481 ERDVVCWNS 489
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
D P EA++++ M E + P TL +VL+A L +R H + G + ++
Sbjct: 121 DSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVE 180
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLV 278
L+ Y KC V+ A LF M P N AM + G V
Sbjct: 181 NGLLGMYTKCGSVADAVRLFDWMSSP-NEVSFTAMMGGLAQSGAV 224
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF+ P + N+++ G+ F+ M QGLIPDRF F + C +
Sbjct: 158 VFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTEN 217
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------------------S 169
+ +LH Q +K L S F+ N +I MYS +
Sbjct: 218 LKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAA 277
Query: 170 CWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C D + +++F M E NV+P+ T + L A A + K++H + + +
Sbjct: 278 CSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQ 337
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGR 280
+ + L++ Y KC + A+D+F KM L WN + A G GL R
Sbjct: 338 DLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNT-----IIAGFGNHGLGER 388
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
L CS + L+ +HA +L+T D HV R VF ++ +
Sbjct: 10 LHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNL 69
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ ++++ GY A Y +M L+P+ ++F S+ +CA + + +++HS+
Sbjct: 70 VSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSR 126
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
++KFG S SF+ N+LI+MY C +Q +A+ +F +PN V+ ++T
Sbjct: 127 SLKFGYESISFVSNSLISMYMKC---NQCSDALSVF----TNTPEPNCVSYNALITGFVE 179
Query: 208 ARDLRTVKRVHKCVDESGF 226
+ L K + + G
Sbjct: 180 NQQLERGLEFFKLMRQQGL 198
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPT 89
L + ++M KQIHA ++RT L+ D C Y +FS++ +
Sbjct: 311 LAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYD-IFSKMVHHN 369
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQ 147
+ + N+I+ G+ N L A + +M G+ PD F L +C A + + QL+
Sbjct: 370 LVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFN 429
Query: 148 AIK--FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP---NAVTLVNVL 202
+++ +G+A D + LI+M L++ +E ++ F P + V LV++L
Sbjct: 430 SMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKF---------PFWNDPVVLVSLL 480
Query: 203 TARARARDLRTVKRVHK 219
+A D+ +R+ K
Sbjct: 481 SASRLHGDVVIGERLAK 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 50/265 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQ-------------ISNPTI 90
L C+T LK ++H Q ++ +L P + ++S+ I +
Sbjct: 209 LGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDV 268
Query: 91 YTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ N+++ ++ + H + +F H + PD F F S +CA + KQ+H+
Sbjct: 269 ISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHA 328
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
++ L D + N L+NMY+ C C+ +
Sbjct: 329 HLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGER 388
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLM 237
A+++F +M ++P++VT + +LTA A + + ++E+ G +E + L+
Sbjct: 389 AVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLI 448
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNN 262
D + ++ A + K F WN+
Sbjct: 449 DMLGRAGRLNEAEEYMRKFPF-WND 472
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 14/137 (10%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDPCADY-------------HVRLVFSQISNPTIY 91
+ ++K ++ L QIHA + R +L P + H +F+Q NP ++
Sbjct: 39 IIIDKSKSINNLHQIHAFLYRHNLHHHPILSFKLQRSYSSLGHLNHSLTLFNQTQNPNVF 98
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKF 151
SI+ +T LH++A LFY +M+ Q + P+ F F S+ KSC + + +H+QAIKF
Sbjct: 99 FYTSIIHAHTFHKLHYQALLFYAQMLTQKVTPNAFTFSSILKSCP-LEFAQIIHAQAIKF 157
Query: 152 GLASDSFLHNTLINMYS 168
GL SD ++ L+++Y+
Sbjct: 158 GLDSDLYVRTCLVDVYA 174
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R++F + + + N ++ GY L +E + + +M+ + P ++ +C I
Sbjct: 214 RVLFDGLEDRDLVCWNVMIDGYVQHGLANEGLVLFRQMLKDRVRPSEVTVLAVLSACGQI 273
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ +HS G+ ++ + + LI+MYS C L ++A +F R++ ++V
Sbjct: 274 GALESGRWVHSYIQNNGIEINAHVGSALIDMYSKCGNL---EDARLVFERIKYKDV 326
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C + RLVF +I + NS+V GY +A ++EM G P F
Sbjct: 305 YSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQPTDITF 364
Query: 129 PSLFKSCADIYVEKQLHSQAIKF-GLASDSFLHNTLINMYSS 169
+ +C + + SQA++ G + H+ L + YS
Sbjct: 365 IGVLSACGHAGLVGKNSSQAMQLQGSQKNRNSHHPLSDPYSG 406
>gi|449528126|ref|XP_004171057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 415
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 49/261 (18%)
Query: 53 MRELKQIHAQMLRTSLF--------------FDPCADYH-VRLVFSQISNPTIYTCNSIV 97
MRELK +HA+++ L D H LVF + P + N ++
Sbjct: 1 MRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLI 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--IYVEK-QLHSQAIKFGLA 154
RGY+ A Y +M+ G +P+RF P + KSCA Y E +H QAI+ G+
Sbjct: 61 RGYSTSPHPINAIFLYVQMMRSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGML 120
Query: 155 SDSFLHNTLINMYSS---CWCLDQP-DE------------------------AIKIFYRM 186
S ++HN LIN Y+ C Q DE A +F M
Sbjct: 121 SHVYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREM 180
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD-AYCKCKF 245
+P+ TLV++L+ +++ L K VH V+ +G + L+ L+D AY K
Sbjct: 181 RETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILRNALLDIAYSKHGL 240
Query: 246 VSRAWDLFVKMLFPWNNYGQW 266
+ A ++F ++ P N W
Sbjct: 241 IRHAREIFDQI--PEKNVISW 259
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF ++SN T+ + NS++ GY L AFL + EM G PD+F L C+
Sbjct: 145 VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCR 204
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSS---------------------------- 169
+ + K +H G+ D L N L+++ S
Sbjct: 205 LDIGKSVHHYVEITGIEFDLILRNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMIL 264
Query: 170 CWCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C+ D Q EA+ +F +M + P+ TLV+VL+A ++ DL ++ H C+
Sbjct: 265 CYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVI 324
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
V L +L+D Y KC + D F K L WN
Sbjct: 325 TVTLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWN 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
H R +F QI + + NS++ Y EA L + +M +IPD S+ +C
Sbjct: 243 HAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETTIIPDETTLVSVLSACS 302
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VK 192
D+ + ++ H + + L N+L++MY C L + + F+ + +N V
Sbjct: 303 QIGDLAMGEKTHGCICRHSIVITVTLLNSLVDMYVKCGAL---ETVLDFFFEFKDKNLVS 359
Query: 193 PNAVTLVNVLTARARARD-LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
N V + L D L+ +H +G W K T M C +S D
Sbjct: 360 WNIV--IQALALHGHGLDALKLFNMMHT----TGIWPD---KFTFMGLLSACNHLSTWDD 410
Query: 252 LFVK 255
++++
Sbjct: 411 IYLR 414
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C+++ +L KQ+H+ +L+ + FD C D +F+ +
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
N ++ Y + ++F + +M G+ P++F +P + ++C I + +Q+HS
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSL 371
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+IK G SD ++ LI+MYS CLD+ +EA
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F M+ V P+ + L + +A A + +R ++H V SG+ + + + TL++
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNL 491
Query: 240 YCKCKFVSRAWDLF 253
Y +C A+ LF
Sbjct: 492 YARCGRSEEAFSLF 505
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 45/259 (17%)
Query: 43 CLVSLEKCSTMREL-KQIHA---------QMLRTSLFFDPCADY----HVRLVFSQISNP 88
C++ C+ EL +QIH+ M + + D + Y R + +
Sbjct: 351 CILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKR 410
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
+ + S++ GY + EA + EM G+ PD S +CA I + Q+H
Sbjct: 411 DVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIH 470
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPDE----------------- 178
++ G A+D + NTL+N+Y+ C ++ DE
Sbjct: 471 ARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYK 530
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+ +F +M K N T ++ ++A A D++ K+VH ++G S E+ L+
Sbjct: 531 QALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALI 590
Query: 238 DAYCKCKFVSRAWDLFVKM 256
Y KC + A +F +M
Sbjct: 591 SLYGKCGSIEDAKMIFSEM 609
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 35/233 (15%)
Query: 56 LKQIHAQMLRTSLFFDPCAD----YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL 111
++ + A L +L D A + R VF ++S+ + +++ GY L EAF
Sbjct: 71 VRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFR 130
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSC--ADIYVE-KQLHSQAIKFGLASDSFLHNTLINMY- 167
Y +M +IP ++ S+ +C ++ + + +H+Q K S++F+ N LI +Y
Sbjct: 131 LYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYL 190
Query: 168 --------SSCWC-------------------LDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+C + A++IF M++ ++P+ VT+ +
Sbjct: 191 GFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVAS 250
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+L A A DL+ K++H + ++G + +L+D Y KC + A D+F
Sbjct: 251 LLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + T N ++ G+ L+ +A + + +M G + F F S + A D
Sbjct: 504 LFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLAD 563
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
I KQ+H +A+K G S++ + N LI++Y C ++
Sbjct: 564 IKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITS 623
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F +M+ E +KPN VT + VL A
Sbjct: 624 CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAA 658
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 32/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ TI + SI+ + + LH+EA + EM +GL PD + S+ +CA
Sbjct: 316 VFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNS 375
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ +++H+ K + S+ + N L+NMY+ C +++
Sbjct: 376 LDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGG 435
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P+EA+++F M+ + +KP+ VT+ VL A A L + +H + G++S
Sbjct: 436 YSQNSLPNEALQLFLDMQ-KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSD 494
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ + L+D Y KC + A LF
Sbjct: 495 LHVACALVDMYVKCGLLVLAQQLF 518
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 111/259 (42%), Gaps = 48/259 (18%)
Query: 51 STMRELKQIHAQMLRTSL-------------FFDPCADYHVRLVFSQISNPTIYTCNSIV 97
+ +RE K++H +L+ +F R++F ++S+ + + NS++
Sbjct: 172 AKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMI 231
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLA 154
G T F+ +M+ G+ D ++ +CA++ + + LH+ +K G +
Sbjct: 232 SGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFS 291
Query: 155 SDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRM 186
+NTL++MYS C L+ + EAI +F M
Sbjct: 292 GGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEM 351
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ + ++P+ + +V+ A A + L + VH + ++ S++ + LM+ Y KC +
Sbjct: 352 QSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSM 411
Query: 247 SRAWDLF----VKMLFPWN 261
A +F VK + WN
Sbjct: 412 EEANLIFSQLPVKNIVSWN 430
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS-FLHNTLINMYSSCWCLD 174
M + ++ + +F ++ +C D+ +++ G+ +D FL N L++ Y+ +
Sbjct: 88 MAIDEVLGAKLVF--MYVNCGDLVKGRRIFD-----GILNDKIFLWNLLMSEYAK---IG 137
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
E++ +F +M+ ++ ++ T VL A + +R KRVH V + GF S+ +
Sbjct: 138 NYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVN 197
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+L+ AY KC V A LF ++ + WN+
Sbjct: 198 SLIAAYFKCGEVESARILFDELSDRDVVSWNS 229
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 55/210 (26%)
Query: 27 DNINNNNINSQYQAHFCLVSL-EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQI 85
++I NN+ S L+++ KC +M E L+FSQ+
Sbjct: 384 NHIKKNNMGSNLPVSNALMNMYAKCGSMEE----------------------ANLIFSQL 421
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EK 142
I + N+++ GY+ +L +EA + +M Q L PD + +CA + +
Sbjct: 422 PVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGR 480
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------D 174
++H ++ G SD + L++MY C L
Sbjct: 481 EIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHG 540
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI F +M + ++P + ++L A
Sbjct: 541 FGKEAISTFEKMRVAGIEPEESSFTSILYA 570
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 117/294 (39%), Gaps = 81/294 (27%)
Query: 53 MRELKQIHAQMLRTSL------------FF--DPCADY-HVRLVFSQISNPTIYTCNSIV 97
M++ KQIHA + +L FF P D+ + +F+ I NP I+ NSI+
Sbjct: 1 MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSII 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS 157
YT + H+ F + +M+ + P+ F +L K+C + +Q+ + ++K G +SD
Sbjct: 61 TSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQVFTLSMKLGNSSDV 120
Query: 158 FLHNTLINMYSS--------------------CWC--------LDQPDEAIKIFYRMEIE 189
+ +++IN +S CW +EA +F +M +
Sbjct: 121 YFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLR 180
Query: 190 N------------------------------------VKPNAVTLVNVLTARARARDLRT 213
N +K N LV+VL A
Sbjct: 181 NEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTMVGAFEE 240
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
K +H V+E+G +EL T L+D Y KC +V A +F KM P + W+
Sbjct: 241 GKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKM--PVKDVATWS 292
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 39/225 (17%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F DP + + V + S +N +Y NSI+R T+ L EA Y E L PD + F
Sbjct: 61 FRDPTSSFSVFRLASPSNN--VYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTF 118
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------- 176
PS+ +CA D + K +H + + G SD ++ N LI+MY LD+
Sbjct: 119 PSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 178
Query: 177 -------------------DEAIKIFYR-----MEIEN-VKPNAVTLVNVLTARARARDL 211
+EA++I+Y+ ME+ N KP+ +T+ ++L A DL
Sbjct: 179 RDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDL 238
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K VH + SG+ L++ Y KC + + ++F M
Sbjct: 239 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 283
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 102/279 (36%), Gaps = 72/279 (25%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI------VQGLIPDRFMFPSLF 132
R VF ++ + + NS++ GY +EA Y++ I V PD S+
Sbjct: 170 RKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSIL 229
Query: 133 KSCA---DIYVEKQLHSQAIKFG---------------------LAS----------DSF 158
++C D+ K +H I G LAS DS
Sbjct: 230 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV 289
Query: 159 LHNTLINMY----------------------------SSCWCLDQPDEAIKIFYRMEIEN 190
N++IN+Y +SC + + +++ RM E
Sbjct: 290 SWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 349
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
V P+ T++++L + R K +H C+ + G S V + L++ Y KC + ++
Sbjct: 350 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 409
Query: 251 DLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289
+F L + W +A + G+ G A + G
Sbjct: 410 QVF--KLMKTKDVVTW--TALISACGMYGEGKKAVRAFG 444
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ ++ + ++P+ T +V+ A A D K +H V + GF S + + L+
Sbjct: 98 EALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALI 157
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D YC+ + +A +F +M + WN+
Sbjct: 158 DMYCRFNDLDKARKVFEEMPLRDVVSWNS 186
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA---------------DYHVRLVFSQISNPTIYT 92
+C ++R++KQ+HA M+ DP A H LVF QI P ++
Sbjct: 16 RRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFM 75
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQG----LIPDRFMFPSLFKSCADIYVEK---QLH 145
N+++RG + +A Y M +G + PD+ FP + ++C + Q+H
Sbjct: 76 YNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVH 135
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
+ +K G SD+F+ N LI M++SC L A +F + +AV ++T
Sbjct: 136 AHVVKAGCESDAFVRNALIGMHASCGELGV---ASALFD----GRAREDAVAWSAMITGC 188
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
AR D+ + K DE HV ++ AY K ++ A LF ++ + WN
Sbjct: 189 ARRGDIVAAR---KLFDECPVKDHVSW-NVMITAYAKRGEMAPARVLFNRIPERDVVSWN 244
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE----SGFWSHVELKT 234
A+++F +M+ KP+ VT++++L+A A + D+ +R+H + E +GF V L
Sbjct: 259 AMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGF--TVILGN 316
Query: 235 TLMDAYCKCKFVSRA----WDLFVKMLFPWNN 262
L+D Y KC + A W + K + WN+
Sbjct: 317 ALIDMYAKCGSMKSALQVFWVMRDKDVSTWNS 348
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 39/222 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA- 136
R VF ++ N+++ GY+ L +A + E++ L PD F P + K+CA
Sbjct: 148 RGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAG 207
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
D+ + + +H+ A+K G SD+F+ N LI MY C ++
Sbjct: 208 VADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSV 267
Query: 177 ----------DEAIKIFYRM---EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
E +F R+ E E + P+ T+V V+ A A ++R VH +
Sbjct: 268 MYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFK 327
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
G V + +L+D Y KC ++ A LF K + WN
Sbjct: 328 LGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWN 369
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 44/205 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHV-RLVFSQISNPTI 90
L++ + +R K+IH MLR L D C+ + +L+F ++ N ++
Sbjct: 509 LLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSL 568
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
N ++ G++ L EA + +M+ G+ P + +C+ + + K++HS
Sbjct: 569 VCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSF 628
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------DE------------------A 179
A+K L+ D+F+ LI+MY+ C C++Q DE A
Sbjct: 629 ALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKA 688
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
I++F M+ + +P++ T + VL A
Sbjct: 689 IELFELMQNKGGRPDSFTFLGVLIA 713
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 44/242 (18%)
Query: 56 LKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTIYTCNSIVRGYTN 102
LK+IH R D C+ VF + T+ + N+++ +
Sbjct: 420 LKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQ 479
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFL 159
++ + M+ G+ PDRF SL +CA + K++H ++ GL D F+
Sbjct: 480 NGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFI 539
Query: 160 HNTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENV 191
+L+++Y C + + P EA+ F +M +
Sbjct: 540 GISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGI 599
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
KP + + VL A ++ LR K VH ++ + L+D Y KC + ++ +
Sbjct: 600 KPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQN 659
Query: 252 LF 253
+F
Sbjct: 660 IF 661
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTV 214
D FL+N L++ YS +AI +F + ++ P+ TL V A A D+
Sbjct: 158 DLFLYNALLSGYSRNALFR---DAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ VH ++G +S + L+ Y KC FV A +F M L WN+
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNS 266
>gi|302824721|ref|XP_002994001.1| hypothetical protein SELMODRAFT_138033 [Selaginella moellendorffii]
gi|300138163|gb|EFJ04941.1| hypothetical protein SELMODRAFT_138033 [Selaginella moellendorffii]
Length = 948
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 32/214 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R F +IS ++ +++ GY N EA + EMI + + D + +CA
Sbjct: 426 AREAFDKISQKSVAAYTAMIAGYANNKQPREALAIFQEMIRRRVAADNLVLAVAISACAS 485
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
D+ K LH A+ GL D + L++MYS C ++
Sbjct: 486 IPDLEEGKALHCSAMDLGLHRDDVVRTALVDMYSRCGSMEDASAVFGEIERPDTVAWSAM 545
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESG 225
P A+ + RM+ + +P+ T+V VL A A A + ++VH + + G
Sbjct: 546 IAALGRHGDPRGAVAMAARMQQDGWRPSGATMVGVLAACAHAGMIEEAARKVHSLLVDGG 605
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
F S E+K +M Y K + A + F K+ P
Sbjct: 606 FDSDPEVKFAVMRMYAKVGSIQEACNAFDKIENP 639
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 31/125 (24%)
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
A + M QG++PDR F ++ S DI K++HS + L DS + ++
Sbjct: 253 ALDLFDRMREQGVVPDRICFVTVLDSVIGLGDIAQGKRIHSMVLDRELERDSMVGTAVVK 312
Query: 166 MYS-------SCWCLDQPDE---------------------AIKIFYRMEIENVKPNAVT 197
MY+ +C D+ D+ ++I RME E VKPN VT
Sbjct: 313 MYARIGSIQDACRAFDRIDQPGVAAWTVLVGAYCRLGSFNSVMQILERMEAEGVKPNEVT 372
Query: 198 LVNVL 202
+ +L
Sbjct: 373 FITIL 377
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 111/311 (35%), Gaps = 60/311 (19%)
Query: 57 KQIHAQML-----RTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
K+IH+ +L R S+ + R+ F +I P + +V Y
Sbjct: 289 KRIHSMVLDRELERDSMVGTAVVKMYARIGSIQDACRAFDRIDQPGVAAWTVLVGAYCRL 348
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-----KQLHSQAIKFGLASDSF 158
+ M +G+ P+ F ++ +C ++ +E + L S+ + L + +
Sbjct: 349 GSFNSVMQILERMEAEGVKPNEVTFITILDTCKNLALEDGKKIQALASEQQQRSLDASAR 408
Query: 159 LHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIEN 190
+ +I M+S + QP EA+ IF M
Sbjct: 409 IGTAVIGMFSRFSSMILAREAFDKISQKSVAAYTAMIAGYANNKQPREALAIFQEMIRRR 468
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
V + + L ++A A DL K +H + G ++T L+D Y +C + A
Sbjct: 469 VAADNLVLAVAISACASIPDLEEGKALHCSAMDLGLHRDDVVRTALVDMYSRCGSMEDAS 528
Query: 251 DLFVKMLFPWNNYGQWAMSATVG----PQGLVGRHSTAHQ---------ISGPCPKKAHK 297
+F ++ P + AM A +G P+G V + Q + G AH
Sbjct: 529 AVFGEIERP-DTVAWSAMIAALGRHGDPRGAVAMAARMQQDGWRPSGATMVGVLAACAHA 587
Query: 298 LFFFSMLKKVH 308
+KVH
Sbjct: 588 GMIEEAARKVH 598
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHS 146
++ +I+ G+T EA +HEM G++P+ F + + +C+ I + KQ+HS
Sbjct: 282 VFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHS 341
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQ-----------------------------PD 177
+ + GL +D + N+L++MY C + + +
Sbjct: 342 RVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEE 401
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E+IK+F M+ V+PN+ TL +L A + L +++H + ++ + V + L+
Sbjct: 402 ESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALV 461
Query: 238 DAYCKCKFVSRAW 250
DAY V AW
Sbjct: 462 DAYAGLGMVDDAW 474
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 96/258 (37%), Gaps = 49/258 (18%)
Query: 34 INSQYQAHFCL-VSLEKCSTMRELKQ-IHAQMLRTSLFFDP----------------CAD 75
I+ +Y F L +L CS +RE Q L T FD C
Sbjct: 109 ISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQ 168
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
R VF ++N I + +V + +A YH MI G+ P+ F F L +
Sbjct: 169 EAYR-VFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAAS 227
Query: 136 A--DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ + K +H+ + + + + L L++MY C ++
Sbjct: 228 SFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTA 287
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EAI F+ ME V PN T +L A + L K++H V +G
Sbjct: 288 IISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAG 347
Query: 226 FWSHVELKTTLMDAYCKC 243
+ V + +L+D Y KC
Sbjct: 348 LENDVSVGNSLVDMYMKC 365
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 109/268 (40%), Gaps = 52/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL---------VFSQISNPT 89
L CS++ L KQIH++++ L D D +++ F I++P
Sbjct: 324 LNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPN 383
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ + S++ G++ L E+ + M G+ P+ F ++ +C I ++LH
Sbjct: 384 VISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHG 443
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
IK +D + N L++ Y+ +D +
Sbjct: 444 YIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEM 503
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ I M ++V+ + +L + L+A A + T K++H +SG S + + L+D
Sbjct: 504 ALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVD 563
Query: 239 AYCKCKFVSRAWDLFVKMLFP----WNN 262
Y KC + A F+++ P WN
Sbjct: 564 LYGKCGCIHDAHRSFLEITEPDAVSWNG 591
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 67/264 (25%)
Query: 21 SPLINL----DNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY 76
SP+I + D +NN+ S Y KC + E +Q+ +M PC D
Sbjct: 39 SPIIKMGFQEDMFLSNNLLSLYG---------KCFGVAEARQLFDEM--------PCRD- 80
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ + ++ Y H EA + M++ G P+ F + +SC+
Sbjct: 81 -------------VASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCS 127
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ + + K G S+ L + LI+ YS C C +
Sbjct: 128 ALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTM 187
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+++++RM V PN T V +L A + L K VH +
Sbjct: 188 MVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWR 246
Query: 226 FWSHVELKTTLMDAYCKCKFVSRA 249
++ LKT L+D YCKC+ + A
Sbjct: 247 IELNLVLKTALVDMYCKCQSIEDA 270
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 28/141 (19%)
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+HS IK G D FL N L+++Y C+ + +
Sbjct: 37 IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+++F M I PN TL L + + R+ R V +SGF S+ L +
Sbjct: 97 HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC A+ +F M
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYM 177
>gi|302794420|ref|XP_002978974.1| hypothetical protein SELMODRAFT_109721 [Selaginella moellendorffii]
gi|300153292|gb|EFJ19931.1| hypothetical protein SELMODRAFT_109721 [Selaginella moellendorffii]
Length = 948
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 32/214 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R F +IS ++ +++ GY N EA + EMI + + D + +CA
Sbjct: 426 AREAFDKISQKSVAAYTAMIAGYANNKQPREALAIFQEMIRRRVAADNLVLAVAISACAS 485
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
D+ K LH A+ GL D + L++MYS C ++
Sbjct: 486 IPDLEEGKALHCSAMDLGLHRDDVVRTALVDMYSRCGSMEDASAVFGEIERPDTIAWSAM 545
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESG 225
P A+ + RM+ + +P T+V VL A A A + ++VH + + G
Sbjct: 546 IAALGRHGDPRGAVAMAARMQQDGWRPTGATMVGVLAACAHAGMMEEAARKVHSLLVDGG 605
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
F S E+K +M Y K + A + F K+ P
Sbjct: 606 FDSDPEVKFAVMRMYAKVGSIQEACNAFDKIENP 639
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 31/125 (24%)
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
A + M QG++PDR F ++ S DI K++HS + L DS + ++
Sbjct: 253 ALDLFDRMREQGVVPDRICFVTVLDSVIGLGDIAQGKRIHSMVLDRELERDSMIGTAVVK 312
Query: 166 MYS-------SCWCLDQPDE---------------------AIKIFYRMEIENVKPNAVT 197
MY+ +C D+ D+ ++I RME E VKPN VT
Sbjct: 313 MYARIGSIQDACRAFDRIDQPGVAAWTVLIGAYCRLGSFNSVMQILERMEAEGVKPNEVT 372
Query: 198 LVNVL 202
+ +L
Sbjct: 373 FITIL 377
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 111/311 (35%), Gaps = 60/311 (19%)
Query: 57 KQIHAQML-----RTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
K+IH+ +L R S+ + R+ F +I P + ++ Y
Sbjct: 289 KRIHSMVLDRELERDSMIGTAVVKMYARIGSIQDACRAFDRIDQPGVAAWTVLIGAYCRL 348
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-----KQLHSQAIKFGLASDSF 158
+ M +G+ P+ F ++ +C ++ +E + L S+ + L + +
Sbjct: 349 GSFNSVMQILERMEAEGVKPNEVTFITILDTCKNLALEDGKKIQALASEQQQRSLDASAR 408
Query: 159 LHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIEN 190
+ +I M+S + QP EA+ IF M
Sbjct: 409 IGTAVIGMFSRFSSMILAREAFDKISQKSVAAYTAMIAGYANNKQPREALAIFQEMIRRR 468
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
V + + L ++A A DL K +H + G ++T L+D Y +C + A
Sbjct: 469 VAADNLVLAVAISACASIPDLEEGKALHCSAMDLGLHRDDVVRTALVDMYSRCGSMEDAS 528
Query: 251 DLFVKMLFPWNNYGQWAMSATVG----PQGLV---------GRHSTAHQISGPCPKKAHK 297
+F ++ P + AM A +G P+G V G T + G AH
Sbjct: 529 AVFGEIERP-DTIAWSAMIAALGRHGDPRGAVAMAARMQQDGWRPTGATMVGVLAACAHA 587
Query: 298 LFFFSMLKKVH 308
+KVH
Sbjct: 588 GMMEEAARKVH 598
>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
Length = 734
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 39/221 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
+ F +I++ + N ++ GY + EA +H+M + P+ F+F S +CA
Sbjct: 68 AKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKMDIP---PNGFIFASALAACAG 124
Query: 137 --DIYVEKQLHSQAIKF-GLASDSFLHNTLINMYSSCWCL-------------------- 173
D+ +++H + ++ +ASD + N+L+ MY+ C +
Sbjct: 125 LGDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNA 184
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
D P++A+++++RM+ E ++PN ++LTA A +L +H+ + G
Sbjct: 185 MISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLG 244
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ ++ L++ Y KC + A ++F + +F W +
Sbjct: 245 LQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTS 285
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 28/204 (13%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS ++ ++T S++ GY EAF FY M + P F +L +C+ +
Sbjct: 271 VFSGLATRDVFTWTSMIAGYAQLGFGSEAFAFYDGMRRDCVSPTSATFVALLSACSTLEQ 330
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
K LH + FG S + + L+ MYS C L+
Sbjct: 331 GKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQ 390
Query: 176 ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
P +A+ +F +M +E ++ + T + L A + RD R K + + +D SG +
Sbjct: 391 FGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSI 450
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+ AY KC + A +F +M
Sbjct: 451 RADLVSAYSKCGDMEEARKIFDRM 474
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 36/226 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + + N+++ + + +A YH M + L P+ F+F SL +CA +
Sbjct: 170 IFDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGN 229
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + +H + GL D + N LINMYS C C+D+
Sbjct: 230 LELGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAG 289
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA + M + V P + T V +L+A L K +H+ V GF S
Sbjct: 290 YAQLGFGSEAFAFYDGMRRDCVSPTSATFVALLSA---CSTLEQGKHLHEEVKAFGFESI 346
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275
++T LM Y +C + A LF KM +Y W+ T Q
Sbjct: 347 TVVETALMFMYSRCGSLEDAEFLFAKM--QQKDYVSWSAMVTSHAQ 390
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
S + ++ I A ++ + C D R +F ++ + + T +++GY + A
Sbjct: 442 SGIDKMDSIRADLVSA---YSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAA 498
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQ--AIKFGLASDSFLHNTLINMY 167
+H M +G+ PD F S+ ++C+++ +++H++ A + G SD FL N LINMY
Sbjct: 499 LELFHRMKPEGVEPDSVTFSSVLQACSNLEDGREVHARILAAQGGKMSD-FLGNGLINMY 557
Query: 168 SSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVTLV 199
+ C + Q D+ I + M E V P+ VTL+
Sbjct: 558 ARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLI 617
Query: 200 NVLTA 204
+L +
Sbjct: 618 AILNS 622
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 35/229 (15%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCA---------------DYHVRLVFSQISNPTIYTC 93
+C ++R++KQ+HA M+ DP A H RLVF +I +P +
Sbjct: 17 RCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMY 76
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI------VQGLIPDRFMFPSLFKSCADIYVEK---QL 144
N+++RG + +A Y M G+ PD+ FP + ++CA + + Q+
Sbjct: 77 NTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQV 136
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
H+ +K G SD+F+ N LI M+++C L A + E + +AV +++
Sbjct: 137 HAHVVKAGCESDAFVRNALIGMHATCGDLG----AAAALFDGE---AREDAVAWSAMISG 189
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
AR D+ + + DES V ++ AY K ++ A +LF
Sbjct: 190 FARRGDIGAAREL---FDESPVKDLVSW-NVMITAYAKLGDMAPARELF 234
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F + + + N+++ GY H +A + +M G PD SL +CA
Sbjct: 230 ARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACAD 289
Query: 137 --DIYVEKQLHS-QAIKFG-LASDSFLHNTLINMYSSC----------WCLDQPD----- 177
D+ ++LH + +F + + L N LI+MY+ C W + +
Sbjct: 290 SGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWN 349
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI +F +M NVKP+ +T V VL A
Sbjct: 350 SIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVA 389
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPTI 90
L C+ M + Q+HA +++ D C D +F +
Sbjct: 121 LRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDA 180
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
++++ G+ + A + E V+ L+ M + + D+ ++L A
Sbjct: 181 VAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITA-YAKLGDMAPARELFDGAPD 239
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
D N +I+ Y C Q A+++F +M+ KP+ VT++++L+A A + D
Sbjct: 240 ----RDVVSWNAMISGYVRCGSHKQ---AMELFEQMQAMGEKPDTVTMLSLLSACADSGD 292
Query: 211 LRTVKRVHKCVDESGFWSHVE----LKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ +R+H+ + SG +S + L L+D Y KC ++ A ++F M + WN+
Sbjct: 293 MDAGRRLHRFL--SGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNS 350
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 47/288 (16%)
Query: 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQ-------------IS 86
A C+ L +C + ++Q+HA ++ D + ++Q ++
Sbjct: 3 AESCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLT 62
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQ 143
T + +V G+ H + + E++ G+ PD + P + ++C D+ + +
Sbjct: 63 MRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRV 122
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------------- 177
+H +K GL SD F+ +L++MY+ C ++
Sbjct: 123 IHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNA 182
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
E++ +F RM E V P+ V +V V+ A A+ + + + + +GF V L T +
Sbjct: 183 YESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAM 242
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+D Y KC V A ++F +M N W SA + G GR A
Sbjct: 243 IDMYAKCGSVESAREVFDRM--KEKNVISW--SAMIAAYGYHGRGKDA 286
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 60/304 (19%)
Query: 11 TRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFF 70
++ P +SS + ++ N I + H + LE+CS+++EL+ I + + L+
Sbjct: 12 SQIPPISSSHRHFLS----QRNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQ 67
Query: 71 D--------------PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
+ D R VF I ++++G+ + +A F+ M
Sbjct: 68 EHLFQTKLVSLFCRYGSVDEAAR-VFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRM 126
Query: 117 IVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ P + F L K C D + V K++H +K G + D F L NMY+ C
Sbjct: 127 RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC--- 183
Query: 174 DQPDEAIKIFYRM-------------------------EI------ENVKPNAVTLVNVL 202
Q EA K+F RM E+ EN+KP+ +T+V+VL
Sbjct: 184 RQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVL 243
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----F 258
A + R +R K +H +GF S V + T L+D Y KC + A LF ML
Sbjct: 244 PAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVV 303
Query: 259 PWNN 262
WN+
Sbjct: 304 SWNS 307
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L+ C EL K+IH ++++ D C H R VF ++ +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDL 201
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+IV GY+ + A + M + L P S+ + + I + K++H
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGY 261
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
A++ G S + L++MY+ C L + P EA
Sbjct: 262 AMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ IF +M E VKP V+++ L A A DL + +HK E +V + +L+
Sbjct: 322 MVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISM 381
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
YCKCK V A +F K+ + WN
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTIVSWN 407
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 108/273 (39%), Gaps = 53/273 (19%)
Query: 53 MRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRG 99
+R K+IH +R + C RL+F + + + NS++
Sbjct: 252 IRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDA 311
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEKQ--LHSQAIKFGLASD 156
Y EA + + +M+ +G+ P +CAD+ +E+ +H +++ L +
Sbjct: 312 YVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRN 371
Query: 157 SFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEI 188
+ N+LI+MY C +D +P EA+ F +M+
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQA 431
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
VKP+ T V+V+TA A K +H V + +V + T L+D Y KC +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMI 491
Query: 249 AWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
A +F M + WN AM G G+
Sbjct: 492 ARLIFDMMSERHVTTWN-----AMIDGYGTHGI 519
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C+++ +L KQ+H+ +L+ + FD C D +F+ +
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
N ++ Y + ++F + +M G+ P++F +P + ++C I + +Q+HS
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSL 371
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+IK G SD ++ LI+MYS CLD+ +EA
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F M+ V P+ + L + +A A + +R ++H V SG+ + + + TL++
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNL 491
Query: 240 YCKCKFVSRAWDLF 253
Y +C A+ LF
Sbjct: 492 YARCGRSEEAFSLF 505
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 45/259 (17%)
Query: 43 CLVSLEKCSTMREL-KQIHA---------QMLRTSLFFDPCADYH----VRLVFSQISNP 88
C++ C+ EL +QIH+ M + + D + Y R + +
Sbjct: 351 CILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKR 410
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
+ + S++ GY + EA + EM G+ PD S +CA I + Q+H
Sbjct: 411 DVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIH 470
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPDE----------------- 178
++ G A+D + NTL+N+Y+ C +D DE
Sbjct: 471 ARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYE 530
Query: 179 -AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+ +F +M K N T ++ ++A A D++ K+VH ++G S E+ L+
Sbjct: 531 QALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALI 590
Query: 238 DAYCKCKFVSRAWDLFVKM 256
Y KC + A +F +M
Sbjct: 591 SLYGKCGSIEDAKMIFSEM 609
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 35/233 (15%)
Query: 56 LKQIHAQMLRTSLFFDPCAD----YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFL 111
++ + A L +L D A + R VF ++S+ + +++ GY + L EAF
Sbjct: 71 VRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFR 130
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSC--ADIYVE-KQLHSQAIKFGLASDSFLHNTLINMY- 167
Y +M +IP ++ S+ +C ++ + + +H+Q K S++F+ N LI +Y
Sbjct: 131 LYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYL 190
Query: 168 --------SSCWC-------------------LDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+C + A++IF M++ ++P+ VT+ +
Sbjct: 191 GFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVAS 250
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+L A A DL+ K++H + ++G + +L+D Y KC + A D+F
Sbjct: 251 LLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + T N ++ G+ L+ +A + + +M G + F F S + A D
Sbjct: 504 LFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLAD 563
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
I KQ+H +A+K G S++ + N LI++Y C ++
Sbjct: 564 IKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITS 623
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F +M+ E +KPN VT + VL A
Sbjct: 624 CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAA 658
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLF------------FDPCADYHVRL-VFSQISNPTI 90
L L KC+ + ++KQ+HAQ+L+++L F C + F+Q+ P +
Sbjct: 24 LSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNV 83
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+++R +++ + +AF + M G D F FP L K C + V + +H+Q
Sbjct: 84 HLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQ 143
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
KFG SD F+ N+LI+ YS C A K+F M + + V+ ++++ A+
Sbjct: 144 IEKFGFMSDVFVPNSLIDSYSKCGSCG-ISAAKKLFVSM---GARRDVVSWNSMISGLAK 199
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
++V + E S T++D Y K + A+ LF +M P N W+
Sbjct: 200 GGLYEEARKVFDEMPEKDGISW----NTMLDGYVKVGKMDDAFKLFDEM--PERNVVSWS 253
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 18/182 (9%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ + N+++ GY +AF + EM + ++ M K+
Sbjct: 205 EARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKA-G 263
Query: 137 DIYVEKQLHSQA-----IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
D+ + + L + + + + F L EAI +F +ME +
Sbjct: 264 DMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAR------------EAISLFDQMEKACL 311
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
K + T++++L A A + L +++H + + F E+ L+D Y KC ++ A+D
Sbjct: 312 KLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYD 371
Query: 252 LF 253
+F
Sbjct: 372 VF 373
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 31/211 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
VR F ++ I + N+++ Y +LF+ M++QG+ P +C D
Sbjct: 14 VRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTD 73
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-CLD------------------- 174
I + + + + G+ +S + L++MY C D
Sbjct: 74 AREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAM 133
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
P EA+ +F +M+++ V PN VTLV+ L A A DLR+ +H+ V+ G
Sbjct: 134 VAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGI 193
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
S V + T L++ Y KC + A + F +++
Sbjct: 194 QSGVVVGTALVNLYGKCGRIEAAVEAFGQIV 224
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 37/219 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++S+ + +++V Y EA + +M + G+ P++ S +CA D
Sbjct: 118 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 177
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
+ +H + G+ S + L+N+Y C W
Sbjct: 178 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAA 237
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK--CVDESGFW 227
D+ +AI++ +RM++E + PN+ T V+VL A A L+ +R+H+ V G
Sbjct: 238 YARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLE 297
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
S V + T L++ Y KC ++ A D+F K+ L WN+
Sbjct: 298 SDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNS 336
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 53/269 (19%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQM-------------LRTSLFFDPCADYH-VRLVFSQ-- 84
HF L+ C+++ LK IH+ + R + + D H R +F
Sbjct: 26 HFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRH 85
Query: 85 ------ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
P + CN+++R Y N +EA Y M G+ + F +P + K CA
Sbjct: 86 HHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASE 145
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+ +H Q ++ G SD F+ L++MY+ C W
Sbjct: 146 LGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMI 205
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
++P +A+ +F +M+ E + +T ++V +A + D R VH +GF
Sbjct: 206 TLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFI 265
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + +++ Y KC V RA +F +M
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRM 294
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RLVF ++ + NS++ GYT +A +++M P+ + +C+ +
Sbjct: 288 RLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYL 347
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
++ ++LH+ I + D+ L N +++MY C LD
Sbjct: 348 GSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNV 407
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDES 224
EA+++F RM++E V+PN +T ++L+A + A + KC D +
Sbjct: 408 LISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHA---GLIDEGRKCFADMT 464
Query: 225 GFWSHVELK--TTLMDAYCKCKFVSRAWDLFVKM 256
E+K ++D + F++ A+ L K+
Sbjct: 465 KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKI 498
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
A +SFL NT++ Y++ + EAI ++ M+ V N T VL A
Sbjct: 94 APNSFLCNTMLRAYANA---GRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVF 150
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ VH V +GF S + ++ L+D Y KC + A ++F +ML
Sbjct: 151 GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLI 195
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 61/297 (20%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY------HVRLVFSQISN 87
C+ + CS MR+ K IHA + L + CA + L+FSQI N
Sbjct: 7 CISLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQN 66
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
P ++ N+++R Y+ + A ++ M+ + + PD+ FP + +C + + + KQ
Sbjct: 67 PNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQ 126
Query: 144 LHSQAIKFGLA-SDSFLHNTLINMYSSCWCLDQPD------------------------- 177
+H+ +K G+A SD + L+ Y+ C +
Sbjct: 127 IHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRG 186
Query: 178 ---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-SHVELK 233
EA+ F M + V+P+ L L A+ L+ K +H+ V + + + V +
Sbjct: 187 LAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIG 246
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
T L+D Y KC + R+ ++F M +F W SA +G L G A Q
Sbjct: 247 TALVDMYAKCGCIDRSVEVFEGMTKRNVFSW--------SAMIGGFALHGHVRKAMQ 295
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 62/276 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-----------------RLVFSQ 84
++ CS +R KQIH S+ ++ C+++ V R V +
Sbjct: 534 TAINACSNIRATETGKQIHC----ASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAH 589
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
+ ++ N+++ G N EA + +++ G P F F S+ C +
Sbjct: 590 VDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIG 649
Query: 142 KQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQP------------------------ 176
KQ+HS +K L + D+ L +L+ +Y C L+
Sbjct: 650 KQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYA 709
Query: 177 -----DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
D+++ +F+RM +V+ + T +VL A + L K +H + +SGF S+
Sbjct: 710 QNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYET 769
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
+ LMD Y KC V ++++F ++ + PWN+
Sbjct: 770 AASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNS 805
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 33/220 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R + +I P+ N+++ Y+ L E F Y +M QGL+P R F S+ + A
Sbjct: 280 ARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAAS 339
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ +Q+H+ A+K GL ++ F+ ++LIN+Y C+
Sbjct: 340 MTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAM 399
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D +E I++F M +++ + T V+VL A L ++VH ++
Sbjct: 400 LYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSM 459
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + + ++D Y K + A LF L P + W
Sbjct: 460 DADLFVANAMLDMYSKLGAIDVAKALF--SLIPGKDSVSW 497
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ +FS I + N+++ G + EA M G+ PD F + +C++
Sbjct: 482 AKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSN 541
Query: 138 IYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
I KQ+H +IK+ + S+ + ++LI++YS ++
Sbjct: 542 IRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINAL 601
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ DEAI++F ++ + KP+ T ++L+ K+VH +S
Sbjct: 602 ITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSAL 661
Query: 227 WSH-VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L +L+ Y KCK + A L ++
Sbjct: 662 LNQDTSLGISLVGIYLKCKLLEDANKLLAEV 692
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/242 (18%), Positives = 96/242 (39%), Gaps = 21/242 (8%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFS 83
Q+ L + + + + +Q+H +L++ + C + R VF
Sbjct: 160 QFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFD 219
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
I+ P S++ GY + +A + M G PD+ + ++ + A +
Sbjct: 220 GIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSD 279
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+ + + S + N +I+ YS E ++ M+ + + P T ++L+
Sbjct: 280 ARTLLKRIQMPS-TVAWNAVISSYSQSGL---ESEVFGLYKDMKRQGLMPTRSTFASMLS 335
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFP 259
A A +++H + G ++V + ++L++ Y K +S A +F K +
Sbjct: 336 AAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVM 395
Query: 260 WN 261
WN
Sbjct: 396 WN 397
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 116/269 (43%), Gaps = 54/269 (20%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHV---RLVFSQISNPTIY 91
L++C + +K IHAQ++ +P C + ++ R VF + + ++
Sbjct: 14 LQRCKGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVF 73
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQA 148
N+I++GY N EA Y M G+ +R+ FP + K+C + K+ +H
Sbjct: 74 VWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHV 133
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAI 180
+K GL D F+ N L+ Y+ C + D+A+
Sbjct: 134 VKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDAL 193
Query: 181 KIFYRM-EIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+F+ M +++ P++ TLV +L A A+A ++ +H V +SG L + L
Sbjct: 194 VLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGL 253
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ Y C ++ A D+F ++ + WN
Sbjct: 254 IAMYANCGLLNSARDVFDRIDDKNIVVWN 282
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 36/242 (14%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L+ C M++ K+ IH +++ L F+ C + R VF IS I
Sbjct: 114 LKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDI 173
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI-VQG---LIPDRFMFPSLFKSCADIYVEKQ--- 143
T NS++ GY +A + +H M+ VQG PD ++ +CA ++
Sbjct: 174 VTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLW 233
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP-NAVTLVNVL 202
+HS IK G+ D+ L + LI MY++C L+ A +F R++ +N+ NA+ +
Sbjct: 234 IHSYVIKSGIELDAALGSGLIAMYANCGLLNS---ARDVFDRIDDKNIVVWNAIIRCYGM 290
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
A +K +D SG + L+ A+ V+ +LF KM +
Sbjct: 291 HGHAD----EALKMFSGLID-SGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKM----GD 341
Query: 263 YG 264
YG
Sbjct: 342 YG 343
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 34/173 (19%)
Query: 124 DRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW------------ 171
+ + + L + C K +H+Q I G + FL L+ Y+ C+
Sbjct: 6 NSYDYTYLLQRCKGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFD 65
Query: 172 CLDQPD------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
CL D EA+ I+ M V N T VL A +D +
Sbjct: 66 CLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKK 125
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS---RAWDLFV-KMLFPWNN 262
+ +H V + G + + L+ Y KC + R +D+ K + WN+
Sbjct: 126 GQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNS 178
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 35/223 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNK-NLHHE-AFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ R + QI P+I +S+V ++ + L+ +FL Y +M G++P R FP L K+
Sbjct: 54 YARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKA 113
Query: 135 CADIYVEK--QLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC 172
+ Q H+ +KFG SD F+ N+LI+ YS+C W
Sbjct: 114 VFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWT 173
Query: 173 L--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
D EA+ F M+ V N +T+V+VL A +A D+R + +H E+
Sbjct: 174 AMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEA 233
Query: 225 G-FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
G V + ++L+D Y KC A +F +M P N W
Sbjct: 234 GRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEM--PSRNVVTW 274
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CAD 137
VF + + + +++ G+ + EA ++ EM G+ + S+ K+ D
Sbjct: 160 VFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAED 219
Query: 138 IYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQP-------------------- 176
+ + +H ++ G + D F+ ++L++MY C C D
Sbjct: 220 VRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIA 279
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
++ + +F M +V PN TL +VL+A A L +RVH V ++
Sbjct: 280 GYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEI 339
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + TTL+D Y KC + A +F ++
Sbjct: 340 NTTVGTTLIDFYAKCGCLEEAILVFERL 367
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF ++ + + T +++ GY + + EM+ + P+ S+ +CA +
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ +++H IK + ++ + TLI+ Y+ C CL +EAI +F R+ +NV
Sbjct: 322 LHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCL---EEAILVFERLREKNV 372
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 61/281 (21%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLV---------------FSQISNP 88
L+KC + L+ Q+HAQ++ + D C RL+ F ++S
Sbjct: 17 LQKCRKLYNLRLGFQVHAQLVVNGV--DVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLH 145
+++ +I+ Y + E ++ M+ +G+ PD F+FP +FK+C+++ V K ++
Sbjct: 75 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
+ G +S + ++++M+ C +D +
Sbjct: 135 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 194
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTTL 236
+A+ +F +M +E VKPN++T+ + ++A LR + +H C+ S + + +L
Sbjct: 195 KALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 254
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVG 273
+D Y KC+ V A F + L WN AM A G
Sbjct: 255 VDYYAKCRSVEVARRKFGMIKQTDLVSWN-----AMLAVTG 290
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS++S + NSI+ A EM + + + S +C+ +
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 372
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
K++H I+ GL + +F+ N+LI+MY C + +
Sbjct: 373 LRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISV 432
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F + +KPN +T N+L+A
Sbjct: 433 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSA 467
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D + N++I S+C + A+ + M + NV+ N VT+V+ L A ++ LR K
Sbjct: 321 DVVVWNSII---SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK 377
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+H+ + G + + +L+D Y +C + ++ +F M L WN
Sbjct: 378 EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 427
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 134/309 (43%), Gaps = 52/309 (16%)
Query: 33 NINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRT-------------SLFFDPCADYHVR 79
N ++Q + L +R L+Q+HA ++ + SL + + R
Sbjct: 20 NFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYAR 79
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
+F + NP + +S+++ + + LFY M+ G + F S+ K+CAD+
Sbjct: 80 RLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLS 139
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W----- 171
+ K++HS + G SD ++ LI +Y+ W
Sbjct: 140 ALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLIS 199
Query: 172 CLDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
DQ P E+I +F+ M +P++ T+V++L++ ++ L +H D +GF
Sbjct: 200 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL 259
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHS----T 283
+V L T+L++ Y +C VS+A ++F M N W AM + G G GR + T
Sbjct: 260 NVVLGTSLINMYTRCGNVSKAREVFDSM--KERNVVTWTAMISGYGMHGY-GRQAMELFT 316
Query: 284 AHQISGPCP 292
+ GP P
Sbjct: 317 EMRAYGPRP 325
>gi|255570240|ref|XP_002526080.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534577|gb|EEF36274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 42/242 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVF + + + S++ GY A + M ++ +IP S+ +C
Sbjct: 211 EARLVFDGMDERDVISWTSMINGYILNGDEKSALTLFRTMQMERIIPSSVTIASVLSACI 270
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W----- 171
++ + H ++ L S+ + +LI+MY+ C W
Sbjct: 271 NLKDGRCFHGWTMRQNLDSEIIVETSLIDMYAKCNRVDLSYGVLRRTSGERTAPWNAMLS 330
Query: 172 -CL--DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
C+ D EAI +F +M ++ V+P+ T ++L A A DL K +H + ++GF S
Sbjct: 331 GCIHNDLATEAITLFKQMLLKKVEPDGATFNSLLPAYAILADLLPAKNIHCYLKKTGFLS 390
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF------VKMLFPWNNYGQWAMSATVGPQGLVGRHS 282
+E+ T L+D Y KC + A +F V+ +F W S + G+ G
Sbjct: 391 GLEVATCLIDIYSKCGSLESAHRIFNAIPIGVRDIFAW--------SVIISGYGMHGHGE 442
Query: 283 TA 284
TA
Sbjct: 443 TA 444
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 52 TMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN-KNLHHEAF 110
++ E KQ+HA + SL A H++ + + R Y + L+ +A
Sbjct: 21 SLTETKQLHAHTITASLLEPTSA--HLQ--------------SGLARSYMHCGKLYFDAL 64
Query: 111 LFYHEMIVQGL-IPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFG-------LASDSFL 159
Y EM+ G PD + +P + K+C++ I + K +H Q +K + S +
Sbjct: 65 KVYSEMLRSGYCFPDNYTYPVVIKACSELGLIELGKMIHGQTVKEAAERIFDVMKERSVI 124
Query: 160 H-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
N +IN Y C ++A+ +F +M V+ + ++V+VL A ++L +RVH
Sbjct: 125 SWNIMINGYFKNGC---AEKALMVFNQMVDLGVEIDCASVVSVLPACGHLKELEMGRRVH 181
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V++ + + + L+D Y KC ++ A +F M
Sbjct: 182 ATVEDKDLGNKIAARNALIDMYAKCGSMAEARLVFDGM 219
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYT 101
V ++ CS + + K IH Q ++ + +F + ++ + N ++ GY
Sbjct: 85 VVIKACSELGLIELGKMIHGQTVKEA----------AERIFDVMKERSVISWNIMINGYF 134
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSF 158
+A + +++M+ G+ D S+ +C ++ + +++H+ L +
Sbjct: 135 KNGCAEKALMVFNQMVDLGVEIDCASVVSVLPACGHLKELEMGRRVHATVEDKDLGNKIA 194
Query: 159 LHNTLINMYSSCWCL-------DQPDE---------------------AIKIFYRMEIEN 190
N LI+MY+ C + D DE A+ +F M++E
Sbjct: 195 ARNALIDMYAKCGSMAEARLVFDGMDERDVISWTSMINGYILNGDEKSALTLFRTMQMER 254
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
+ P++VT+ +VL+A +D R H S + ++T+L+D Y KC V ++
Sbjct: 255 IIPSSVTIASVLSACINLKDGRCF---HGWTMRQNLDSEIIVETSLIDMYAKCNRVDLSY 311
Query: 251 DLFVKM----LFPWN 261
+ + PWN
Sbjct: 312 GVLRRTSGERTAPWN 326
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTI 90
L L KC+ + ++KQ+HAQ+L+++L F C + F+Q+ P +
Sbjct: 50 LSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNV 109
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+++R +++ + +AF + M G D F FP L K C + V + +H+Q
Sbjct: 110 HLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQ 169
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
KFG SD F+ N+LI+ YS C A K+F M + + V+ ++++ A+
Sbjct: 170 IEKFGFMSDVFVPNSLIDSYSKCGSCG-ISAAKKLFVSM---GARRDVVSWNSMISGLAK 225
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
++V + E S T++D Y K + A+ LF +M P N W+
Sbjct: 226 GGLYEEARKVFDEMPEKDGISW----NTMLDGYVKVGKMDDAFKLFDEM--PERNVVSWS 279
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ + N+++ GY +AF + EM + ++ M K+
Sbjct: 231 EARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKA-G 289
Query: 137 DIYVEKQLHSQA-----IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
D+ + + L + + + + F L EAI +F +ME +
Sbjct: 290 DMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAR------------EAISLFDQMEKACL 337
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
K + T++++L A A + L +++H + + F E+ L+D Y KC +
Sbjct: 338 KLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGLIDDGIR 397
Query: 252 LFVKM 256
F M
Sbjct: 398 YFSTM 402
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R++F ++ + + IV G+ K L EA + +M L D S+ +CA+
Sbjct: 294 ARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAE 353
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME 187
+ + +++H+ + + N L++MY+ C + D+ I+ F ME
Sbjct: 354 SGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGLI---DDGIRYFSTME 403
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 123/305 (40%), Gaps = 82/305 (26%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA--------DYHVRLVFS 83
H L L C T++ L+ IHAQM++ L + C Y + VF
Sbjct: 34 HPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAIS-VFK 92
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK- 142
I P + N++ RG+ + A Y MI GL+P+ + FP + KSCA K
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE 152
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
Q+H +K G D ++H +LI+MY L+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 177 ----DEAIKIFYRMEIENV-------------------------------KPNAVTLVNV 201
+ A K+F + +++V +P+ T+V V
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
++A A++ + ++VH +D+ GF S++++ L+D Y KC + A LF ++ P+
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL--PYK 330
Query: 262 NYGQW 266
+ W
Sbjct: 331 DVISW 335
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + +M+ + PD ++ +CA
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+H G S+ + N LI++YS C L+
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +D+ G
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+T+L+D Y KC + A +F K L WN
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 45/163 (27%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F ++ + + N+++ GYT+ NL+ EA L + EM+ G P+ S+ +CA
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y++K+L G+ + S L +LI+MY+ C ++
Sbjct: 383 IDIGRWIHVYIDKRLK------GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ D + +F RM ++P+ +T V +L+A
Sbjct: 437 SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VF + + N+++ GY + + EM G PD F + S+ +CA +
Sbjct: 406 VFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLEC 465
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ +QLHS IK + F+ NTL++MY+ C L++
Sbjct: 466 LEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVG 525
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
DEA +F RM ++ + P+ V+L ++L+ A + L ++VH + +SG +
Sbjct: 526 YVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTC 585
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y KC + A +F M
Sbjct: 586 LYAGSSLIDMYVKCGAIEAARYVFSCM 612
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R F I N + N+I+ GY + EAF + MI+ G+ PD S+ CA
Sbjct: 503 EARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCA 562
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
++ +Q+H +K GL + + ++LI+MY C ++
Sbjct: 563 NLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNA 622
Query: 175 ------QPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
Q D EAI +F M+ E + P+ +T ++L A L +++H + + G
Sbjct: 623 IIAGYAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGL 682
Query: 227 WSHVE-LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ L +L+ Y + + A LF + +P
Sbjct: 683 LYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYP 716
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 44/195 (22%)
Query: 54 RELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGY 100
R K IHAQ L+ + C + F+Q+ I NS++ Y
Sbjct: 98 RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDS 157
+ + + + + G+ P++F + + SCA DI + KQ+H IK G +S
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS 217
Query: 158 FLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIE 189
F +LI+MYS C L P+EA+K+F M+
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL 277
Query: 190 NVKPNAVTLVNVLTA 204
+ P+ V V V+TA
Sbjct: 278 GLVPDQVAFVTVITA 292
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 39/223 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VFS + + ++ + N+I+ GY +L EA + EM +GL P F SL +C
Sbjct: 605 ARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACTG 663
Query: 138 IY---VEKQLHSQAIKFGLASDS-FLHNTLINMYSSCWCLDQPD---------------- 177
Y + +Q+H K GL D FL +L+ MY + D
Sbjct: 664 PYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWT 723
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EA++++ M N +P+ T +VL A + L + +H +
Sbjct: 724 AIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHV 783
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
G S + ++D Y KC + + +F +M + WN+
Sbjct: 784 GLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNS 826
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 42/246 (17%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNP 88
+ L C+ + ++ KQ+H +++ F+ C R +F + +P
Sbjct: 187 IVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDP 246
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
+ +++ GY L EA + +M GL+PD+ F ++ +C +
Sbjct: 247 DTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLG--------- 297
Query: 149 IKFGLASDSFLH---------NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
+ A D F+ N +I+ + C EAI F M VK TL
Sbjct: 298 -RLDDACDLFVQMPNTNVVAWNVMISGHVKRGC---DIEAIDFFKNMWKTGVKSTRSTLG 353
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM--- 256
+VL+A A L VH + G S+V + ++L++ Y KC+ + A +F +
Sbjct: 354 SVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDER 413
Query: 257 -LFPWN 261
L WN
Sbjct: 414 NLVLWN 419
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 33/158 (20%)
Query: 80 LVFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
++FS+ P + +I+ G+T EA Y EM PD+ F S+ ++C
Sbjct: 708 ILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSIL 767
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
A + + +HS GL SD + +++MY+ C +
Sbjct: 768 ASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSM 827
Query: 176 ---------PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ A+KIF M+ ++P+ VT + VLTA
Sbjct: 828 IVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTA 865
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------------- 174
K +H+Q +KFG S L + ++++Y+ C ++
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160
Query: 175 -QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
++ I F ++ V PN T VL++ AR D+ K+VH V + GF + +
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFP 259
+L+D Y KC + A +F ++ P
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDP 246
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 36/220 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF + + T N+++ GY + L EAF + M +G PD+F + SL CA
Sbjct: 355 NARQVFDNLRSLNRTTWNAMIAGY-GEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICA 413
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS------------------------- 168
D + K+LHSQ G +D + LI+MY+
Sbjct: 414 DRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNA 473
Query: 169 --SCWCL-DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
SC C D EA + F +M ++V P+ +T + +L + DL + +H +++ G
Sbjct: 474 FISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWG 533
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S+ + L+ Y +C ++ A ++F ++ L WN
Sbjct: 534 MLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWN 573
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 34/220 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF+++ + + +++ GY EA + ++I G+ P++ F S+ +C
Sbjct: 255 ARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTN 314
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
D+ +LH+ + GL + + N LI+MYS C L
Sbjct: 315 PNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAM 374
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+EA ++F ME + +P+ T ++L A DL K +H + +G+
Sbjct: 375 IAGYGEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQ 434
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY 263
+ + + T L+ Y KC A +F +M + WN +
Sbjct: 435 TDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAF 474
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF +I + + N+++ + AF + + +G D++ F ++ ++ A
Sbjct: 557 AREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVAN 616
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
D+ + +H K G D + TLI MYS C L
Sbjct: 617 LEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAM 676
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D+ +A+K+F +M++E V P++ T L A AR + K++H + E+G
Sbjct: 677 LAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGM 736
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ + +L++ Y +C + A +F KML
Sbjct: 737 ETDTRVSNSLIEMYSRCGCLCSAKQVFEKML 767
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-IY 139
VF + + + + N+++ GY EA +++M +GL P++ F S+ +C I
Sbjct: 157 VFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIA 216
Query: 140 VE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+E +Q+HS+ K G SD + LINMY C L+
Sbjct: 217 LEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISG 276
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +F ++ ++PN V+ ++L A DL ++H + ++G
Sbjct: 277 YVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQE 336
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
V + L+ Y +C ++ A +F
Sbjct: 337 VLVGNALISMYSRCGSLANARQVF 360
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 28/143 (19%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------ 177
K++H D +L+N LI+MYS C ++ +
Sbjct: 120 KKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALH 179
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EA +FY+M+ E +KPN T +++L+A L +++H + ++G+ S V +
Sbjct: 180 GRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVS 239
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
T L++ YCKC + A +F +M
Sbjct: 240 TALINMYCKCGSLELARKVFNEM 262
>gi|255562005|ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538815|gb|EEF40415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 585
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 112/248 (45%), Gaps = 48/248 (19%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV----------------RLVFSQISNPTIYTCNSIVRGY 100
K++H+ +++ L +D C + R VF +++N + + +I+ GY
Sbjct: 300 KELHSWAIKSGLVYDVCVGCSLVDMYAKCAVDGSLDDSRKVFDRMTNHNVMSWTAIITGY 359
Query: 101 T-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASD 156
N EA + EMI + P+ F F S+ K+CA D+++ +Q ++ A+K G AS
Sbjct: 360 VQNGRSDMEATELFLEMIEGHVKPNHFTFSSILKACANLSDLHLGEQFYAHAVKLGFASV 419
Query: 157 SFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEI 188
+ + N+LI+MYS C ++ +EA ++F +E
Sbjct: 420 NCVGNSLISMYSRCDNMENARKAFDVLFEKNLVSYNTIVEAYAKGLNSEEAFELFNEIED 479
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
NA T ++L+ + + +++H + +S F +++ + L+ Y +C +
Sbjct: 480 TGFVVNAFTFASLLSGASSIGAIGKGEQIHARILKSDFKTNLHISNALISMYSRCGDIEA 539
Query: 249 AWDLFVKM 256
A+ +F M
Sbjct: 540 AFQVFNGM 547
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 68 LFFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
++ C D VF +S I T ++ + + +A ++ MI G +PD +
Sbjct: 222 MYAKGCGDVEGACKVFDNMSERNIVTWTLMISRFQQLGYYRDAIDLFNHMIFSGFMPDNY 281
Query: 127 MFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+ +CA++ + K+LHS AIK GL D + +L++MY+ C D++ K+F
Sbjct: 282 TLSGVVSACAELGLLSLGKELHSWAIKSGLVYDVCVGCSLVDMYAKCAVDGSLDDSRKVF 341
Query: 184 YRMEIEN--------------------------------VKPNAVTLVNVLTARARARDL 211
RM N VKPN T ++L A A DL
Sbjct: 342 DRMTNHNVMSWTAIITGYVQNGRSDMEATELFLEMIEGHVKPNHFTFSSILKACANLSDL 401
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS---RAWD-LFVKMLFPWN 261
++ + + GF S + +L+ Y +C + +A+D LF K L +N
Sbjct: 402 HLGEQFYAHAVKLGFASVNCVGNSLISMYSRCDNMENARKAFDVLFEKNLVSYN 455
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R F + + + N+IV Y EAF ++E+ G + + F F SL +
Sbjct: 438 NARKAFDVLFEKNLVSYNTIVEAYAKGLNSEEAFELFNEIEDTGFVVNAFTFASLLSGAS 497
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
I +Q+H++ +K ++ + N LI+MYS C + A ++F M NV
Sbjct: 498 SIGAIGKGEQIHARILKSDFKTNLHISNALISMYSRC---GDIEAAFQVFNGMGDRNV-- 552
Query: 194 NAVTLVNVLTARAR-ARDLRTVKRVHKCVDESGFW 227
++ +++T A+ +R ++ HK + E+ W
Sbjct: 553 --ISWTSMITGYAKHGFAVRALETFHKML-ETVMW 584
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 33/183 (18%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
++++ Y L +A Y +M+V G P+ + + ++ KSC++ + + IK
Sbjct: 146 SALISCYATNGLEFDAIRVYIDMLVSGFFPNEYCYSAVIKSCSNRENFSYGEIIFGSLIK 205
Query: 151 FG-LASDSFLHNTLINMYS--------SCWCLDQPDE---------------------AI 180
G L S + LI+MY+ +C D E AI
Sbjct: 206 CGYLNSHVCVGCALIDMYAKGCGDVEGACKVFDNMSERNIVTWTLMISRFQQLGYYRDAI 265
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M P+ TL V++A A L K +H +SG V + +L+D Y
Sbjct: 266 DLFNHMIFSGFMPDNYTLSGVVSACAELGLLSLGKELHSWAIKSGLVYDVCVGCSLVDMY 325
Query: 241 CKC 243
KC
Sbjct: 326 AKC 328
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+AI M N P+ +T +L + R+ + + K VH C+ +SG + +L+
Sbjct: 58 KAIIALDVMTQNNTHPDLITYSLLLKSCIRSNNFQKGKLVHNCLTQSGLELDSVILNSLI 117
Query: 238 DAYCKCKFVSRAWDLFVKM 256
Y KC ++ A D+F+ M
Sbjct: 118 SLYSKCGELNSANDIFISM 136
>gi|27545050|gb|AAO18456.1| hypothetical protein, 3'-partial [Oryza sativa Japonica Group]
Length = 382
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 39/204 (19%)
Query: 91 YTCNSIVRGYTNKNLHH---EAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVEKQ 143
+ N+++R + +H A F+ M+ ++P++F FP L K+CA + V Q
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQ 148
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQ-PDE-------------- 178
H+ A+KFG A+D ++ NTLI+MY SC+ D+ P E
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVR 207
Query: 179 ------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
A+ +F M+ V+ + VT++ VL A L + V + V+ G V L
Sbjct: 208 GGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+D KC V A +F M
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGM 291
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 116/287 (40%), Gaps = 77/287 (26%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA------DY---------HVRLVFSQISNPTIY 91
LE+CS M+EL QIH Q+L+ + Y + R+VF IS+P
Sbjct: 17 LERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTV 76
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQA 148
N+++R Y+N N A L YH+M+ + + + FP L K+C+ + +Q+H+
Sbjct: 77 IWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHI 136
Query: 149 IK--FGL---ASDSFLH--------------------------NTLINMYSSCWCLDQP- 176
IK FGL A++S L N +I+ Y LD
Sbjct: 137 IKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAY 196
Query: 177 ---------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
EA+ + +M + +KP+++TL L+A A
Sbjct: 197 KIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLG 256
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L K +H ++++ L L D Y KC + +A +F K+
Sbjct: 257 ALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKL 303
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 119/283 (42%), Gaps = 72/283 (25%)
Query: 56 LKQIHAQMLRTSL---------FFDPCA--------DYHVRLVFSQISNPTIYTCNSIVR 98
L+QIHA +LRTSL FF A +Y R VFSQ NPT+ CN+++R
Sbjct: 27 LRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCR-VFSQRLNPTLSHCNTMIR 85
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEKQLHSQAIKFGLA 154
++ E F + + P + S C D+ Q+H + G
Sbjct: 86 AFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFL 145
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM---------------------------- 186
SDS L TL+++YS+C + +A K+F +
Sbjct: 146 SDSLLMTTLMDLYSTC---ENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLF 202
Query: 187 -EIEN-----VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+++N VKP+ VT + L A A L K+VH +DE+G + L TL+ Y
Sbjct: 203 DKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 241 CKCKFVSRAWDLFVKM----LFPW---------NNYGQWAMSA 270
+C + +A+++F +M + W N +G+ A+ A
Sbjct: 263 SRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEA 305
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 121/304 (39%), Gaps = 84/304 (27%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA--------DYHVRLVFS 83
H L L C T++ L+ IHAQM++T L + C Y + VF
Sbjct: 3 HPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAIS-VFD 61
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA------- 136
I P + N++ RG+ + A Y M+ GL+P+ + FP L KSCA
Sbjct: 62 TIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKE 121
Query: 137 ---------------DIYVEKQLHSQAIKFGLASDS------------FLHNTLINMYSS 169
D+Y+ L S ++ G D+ + LI Y+S
Sbjct: 122 GQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYAS 181
Query: 170 CWCLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLVNV 201
++ EA+++F +M NV+P+ T+V V
Sbjct: 182 RGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KML 257
L+A A++ + ++VH +++ GF ++++ L+D Y KC + A LF K +
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDV 301
Query: 258 FPWN 261
WN
Sbjct: 302 ISWN 305
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 33/210 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+ + GY + EA + +M+ + PD ++ +CA
Sbjct: 191 MFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGS 250
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+HS G + + N LI++YS C L+
Sbjct: 251 IELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGG 310
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M KPN VT++++L+A A + + +H +D+ G
Sbjct: 311 YTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVT 370
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ L+T+L+D Y KC + A +F ML
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAQQVFDSML 400
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 45/163 (27%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F +SN + + N+++ GYT+ NL+ EA L + +M+ G P+ S+ +CA
Sbjct: 292 LFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGA 351
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y++K+L G+ + S L +LI+MY+ C ++
Sbjct: 352 IDIGRWIHVYIDKRLK------GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ + A IF RM ++P+ +T V +L+A
Sbjct: 406 SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448
>gi|242053799|ref|XP_002456045.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
gi|241928020|gb|EES01165.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
Length = 615
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 110/273 (40%), Gaps = 60/273 (21%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCAD----------------YHVRLVF 82
Q H L L+ CS+ L ++HA+++R L D + R+VF
Sbjct: 16 QRHPLLTHLDACSSRAHLAELHARLVRAHLAPDSAVAGRLVALLASPALGDDMRYARMVF 75
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL----------- 131
IS P N ++RGYTN +A + M+ +G+ PD + +
Sbjct: 76 DGISQPNAAVWNCMIRGYTNHGAPSDALATFRAMLWRGVSPDSYTMAAAVSASAAFANWQ 135
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
+++ D +H+ K G ASD F+ + L+N+Y + +
Sbjct: 136 WRATGD-----AVHAMVRKIGCASDLFVMSGLVNLYGTFRSAEDARKVFVEMHERDVVSW 190
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
D+A++ M+ + + PN VT++++L+A + + + V+ + E
Sbjct: 191 TSMISAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRWVYGQLSE 250
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G ++ + + Y KC +S A +F M
Sbjct: 251 YGIEPDADIGNSAISMYAKCGCMSDALQVFRTM 283
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 31/197 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF ++ + + S++ + + +A F EM G+ P++ SL +C
Sbjct: 175 ARKVFVEMHERDVVSWTSMISAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGH 234
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + ++ Q ++G+ D+ + N+ I+MY+ C C+
Sbjct: 235 TQTVDKGRWVYGQLSEYGIEPDADIGNSAISMYAKCGCMSDALQVFRTMPVRSTKSWNIL 294
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+ +F M + P+AVTL +VL+A A+ DL+ + VH + G
Sbjct: 295 IDGFVQNQRHKEALTVFQEMISTGLTPDAVTLASVLSACAQLGDLQQARDVHNYIKNHGI 354
Query: 227 WSHVELKTTLMDAYCKC 243
L +L++ Y KC
Sbjct: 355 HCGTLLTNSLINTYAKC 371
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF I N + S++ Y N EA Y +M G+ PD F S +C
Sbjct: 10 EARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT 69
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------- 177
+ K +H++ + + SD F+ + LINMY+ C +
Sbjct: 70 KLADGKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMT 128
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
EA+ ++ RM+ E V + VT V L A A L+ K +H V E GF S
Sbjct: 129 AYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQS 188
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + T L+ Y KC + A +F ++
Sbjct: 189 LV-VHTALLTMYAKCGELDAARAVFNRL 215
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
F + + N+++ Y L EA Y M QG++PD S +CA
Sbjct: 241 AFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGS 300
Query: 138 IYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ + +++HS+ +K S + L+NMY C L+
Sbjct: 301 LQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTS 360
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+ + ++ M + ++PN +T ++L
Sbjct: 361 VYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVG 396
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRT---------SLFFDPCADY----HVRLVFSQISNPTI 90
L+ C+T+ +QIH Q+L+T S+ D A + H +F ++ +
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GYT + EA + EM QG+ D F S +CA I +Q+H+Q
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564
Query: 148 AIKFGLASDSFLHNTLINMYSSCW-------CLDQP---------------------DEA 179
+ G + D + N L+++Y+ C DQ +EA
Sbjct: 565 SCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEA 624
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ IF +M ++ N+ T + ++A A ++R K++H + ++G+ S E+ L+
Sbjct: 625 LNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITL 684
Query: 240 YCKCKFVSR-AWDLFVKMLFPWNNYG 264
Y KC + +W+ M+ ++ +G
Sbjct: 685 YAKCGTIDDISWN---SMITGYSQHG 707
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 114/263 (43%), Gaps = 32/263 (12%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLVF 82
+ ++ N + FC + L C+ + KQ+H +L+ + + ++
Sbjct: 237 ISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLY 296
Query: 83 SQISNPT----IYTC---------NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
S+ N + I+ C NS++ G + + A + +M + PD
Sbjct: 297 SRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVA 356
Query: 130 SLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC----------WC---L 173
SL +CA + KQ HS AIK G+ SD + +L+++Y C C L
Sbjct: 357 SLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQL 416
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
D +++ +IF +M+IE + PN T ++L +++H V ++GF +V +
Sbjct: 417 DNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVS 476
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
+ L+D Y K + A +F ++
Sbjct: 477 SVLIDMYAKHGKLDHALKIFRRL 499
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 56/265 (21%)
Query: 35 NSQYQAHFCLVSLEKCS----TMRELKQIHAQML----RTSLFF-DPCADYH-------- 77
N ++ V L CS + R ++QIHA+ + +S F +P D +
Sbjct: 158 NVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSS 217
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ VF + + +++ G + EA L + ++++ F
Sbjct: 218 AKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFF---------- 267
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPDE--------- 178
KQLH +K G +S++++ N L+ +YS C+ Q D
Sbjct: 268 -EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISG 326
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A+ +F +M ++ KP+ VT+ ++L+A A L K+ H ++G S
Sbjct: 327 LAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSD 386
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFV 254
+ ++ +L+D Y KC + A + F+
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFFL 411
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
F QI + NS+V G+ EA + +M GL + F F S + A+I
Sbjct: 596 AFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIAN 655
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------EAIKI 182
+ KQ+H K G S++ + N LI +Y+ C +D EA+K+
Sbjct: 656 VRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISWNSMITGYSQHGCGFEALKL 715
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F M+ +V PN VT V VL+A
Sbjct: 716 FEDMKQLDVLPNHVTFVGVLSA 737
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 59/287 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
+ C+++ L Q +HAQ L+ S++ LV + +S P
Sbjct: 108 ISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNA 167
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+++ G+ + + M +G PDRF F L C D + QLH Q
Sbjct: 168 VSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQ 227
Query: 148 AIKFGLASDSFLHNTLINMYSS-----------------------------CWCLDQPDE 178
IK L +F+ N +I MYS C+C D +
Sbjct: 228 MIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDH-ER 286
Query: 179 AIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+++F M ++ VKP+ T VL A A +R K++H + + + V + L+
Sbjct: 287 ALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALV 346
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGR 280
+ Y KC + ++D+F + L WN + A G GL R
Sbjct: 347 NMYAKCGSIKNSYDVFRRTSDRNLVSWNT-----IIAAFGNHGLGAR 388
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 97/251 (38%), Gaps = 51/251 (20%)
Query: 59 IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNL 105
+HA L+T + D HV R +F ++S+ + + ++I+ GY
Sbjct: 25 LHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQTGQ 84
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNT 162
A + +M + +P+ ++F S+ +CA + Q +H+Q++K G S SF+ N
Sbjct: 85 PLLALNLFSQMRI---VPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNA 141
Query: 163 LINMYSSCW-CLD---------------------------QPDEAIKIFYRMEIENVKPN 194
LI+MY C C D QP++ I+ F M + P+
Sbjct: 142 LISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPD 201
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
T +L D ++H + + + ++ Y K + A +F
Sbjct: 202 RFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFG 261
Query: 255 ----KMLFPWN 261
K L WN
Sbjct: 262 LIKEKDLISWN 272
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
DY R +FSQI NP ++ N+++RG++ +AF FY + QGL+PD FP L KS
Sbjct: 18 DYASR-IFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 76
Query: 135 CADIY---VEKQLHSQAIKFGLASDSFLHNTLINM-YSSCWCLDQPDEAIKIFYRMEIEN 190
C ++ + Q H IK G D ++ N+L++M ++ C + A K+F +M +N
Sbjct: 77 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKC---GDVESARKLFDQMPEKN 133
Query: 191 VKP---------------NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+ AV L VL ++ R TV V ++G ++ L T
Sbjct: 134 LVTWSTMISGYAQNNHFDKAVELFKVLQSQG-VRANETV-----MVIKNGMTLNLILGTA 187
Query: 236 LMDAYCKCKFVSRA 249
L+D Y +C + +A
Sbjct: 188 LVDMYARCGSIDKA 201
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLF------------FDPCADYH-VRLVFSQISNPTIYTC 93
L C + K+IH +++ + + C + VF + +
Sbjct: 77 LRDCGELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISW 136
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-----YVEKQLHSQA 148
+ ++ GY L EA Y M + PD F F ++ +C+ + V K++H+
Sbjct: 137 SKMIAGYVRHGLAREAIKLYKAMAID---PDGFTFSAVLNACSSLGPRALEVGKEIHAHM 193
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAI 180
+ L D F+ + L+ M++ C L + P EAI
Sbjct: 194 KRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAI 253
Query: 181 KIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
++F M + V+PNA+T VL A + DL K VH+ + ++GF + +L++
Sbjct: 254 ELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVN 313
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC ++ A ++F M
Sbjct: 314 MYAKCGSITEAREVFDGM 331
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 26/226 (11%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTI 90
L CS + +L K++H QM+ FD A+ R VF + T+
Sbjct: 277 LAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTV 336
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ I+ Y K EA Y +M +G+ P+ F S+ +C+ + K +H+Q
Sbjct: 337 VSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQ 396
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
G D + N L+++Y C +D A K+F RM+I NV V+ +++A A
Sbjct: 397 MKAAGYKPDLAVANALVSLYGKCGSVDS---ARKVFDRMKIRNV----VSWTAMISAYAH 449
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
R +++K +D G + + T++ A + + A F
Sbjct: 450 HRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYF 495
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 51/261 (19%)
Query: 47 LEKCSTM--REL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNP 88
L CS++ R L K+IHA M R L F C R VF
Sbjct: 172 LNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWK 231
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCA---DIYVEKQ 143
+ NS++ Y+ EA + M + P+ + ++ +C+ D+ K+
Sbjct: 232 DVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKE 291
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------------- 175
+H Q + G D+ N+L+NMY+ C + +
Sbjct: 292 VHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGH 351
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P EA+ ++ +M E V+PN +T +VL+A + L K VH + +G+ + +
Sbjct: 352 PREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANA 411
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+ Y KC V A +F +M
Sbjct: 412 LVSLYGKCGSVDSARKVFDRM 432
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 33/156 (21%)
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------- 177
+ +L + C ++ K++H +K G + ++ N L+ MYS C L+
Sbjct: 73 YGNLLRDCGELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRD 132
Query: 178 ------------------EAIKIFYRMEIENVKPNAVTLVNVLTARAR--ARDLRTVKRV 217
EAIK++ M I+ P+ T VL A + R L K +
Sbjct: 133 SISWSKMIAGYVRHGLAREAIKLYKAMAID---PDGFTFSAVLNACSSLGPRALEVGKEI 189
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
H + V + + L+ + KC + + ++F
Sbjct: 190 HAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVF 225
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 44/252 (17%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSI 96
C+++R L +H+ +L T L DP A + +LVF NP + +
Sbjct: 11 CTSLRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVL 70
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGL 153
++ + N EA Y++MI + + F+F S+ ++CA ++ V +++H + IK+GL
Sbjct: 71 IKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGL 130
Query: 154 ASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYR 185
D + +L+ MY CL + E +++F
Sbjct: 131 DVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRL 190
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
+ ++V+ ++VT++++ A LR K VH C+ + L L+ Y +C
Sbjct: 191 LVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDD 250
Query: 246 VSRAWDLFVKML 257
S A +F M
Sbjct: 251 FSSAERIFSNMF 262
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
V I I + N ++ Y ++ L EA + +M QG IPD F S +CA++
Sbjct: 358 VLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGL 417
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
++ Q+H AIK + D F+ N+LI+MYS C +D
Sbjct: 418 LWLGHQIHGYAIKRHIL-DEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICG 476
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EAI++F +M + + N VT + + A + L K +H + G
Sbjct: 477 FSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKD 536
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
+ + T L+D Y KC + A +F M + W SA +G G+ G
Sbjct: 537 LFIDTALIDMYAKCGDLRIAHRVFDSM--SERSVVSW--SAMIGGCGMHG 582
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
L+F +I + ++ NS++ G++ EA + +M + L + F + ++C+ +
Sbjct: 457 LIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMG 516
Query: 139 YVEKQ--LHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------- 173
++EK LH + I +G+ D F+ LI+MY+ C L
Sbjct: 517 HLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIG 576
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW- 227
D AI +F M +KPN +T +N+L+A + + V+E F+
Sbjct: 577 GCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHS----------GYVEEGKFYF 626
Query: 228 ---SHVELKTTLMDAYCKCKFVSRAWDL 252
+ E++ L C +SRA DL
Sbjct: 627 NSMKNFEVEPNLEHFACMVDLLSRAGDL 654
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 112/283 (39%), Gaps = 80/283 (28%)
Query: 51 STMRELKQIHAQMLRTSL---------FFDPCADY-HVRLVFSQISN---PTIYTCNSIV 97
+ ++ LKQ H M+ T L F + C++ H+R +S ++ P Y N+++
Sbjct: 26 NNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMI 85
Query: 98 RGYT---NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKF 151
R + N H A Y ++ PD F FP + K +D++ +Q+H Q + F
Sbjct: 86 RALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVF 145
Query: 152 GLASDSFLHNTLINMYSS------------------------------------------ 169
G S + LI MY S
Sbjct: 146 GFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLL 205
Query: 170 ----CWCLDQ---------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
CW ++ EAI++F RM +ENV+P+ VTL+ VL+A A
Sbjct: 206 EMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGS 265
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L +R+ VD G V L ++D Y K +++A D+F
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVF 308
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
MI+ GL D ++C++ + +S +++LHNT+I S LD+
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYS-VFTHQPCPNTYLHNTMIRALS---LLDE 93
Query: 176 PDE---AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
P+ AI ++ ++ KP+ T VL R D+ +++H V GF S V +
Sbjct: 94 PNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHV 153
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFP----WN----NYGQ 265
T L+ Y C + A +F +ML WN YG+
Sbjct: 154 VTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGK 194
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 49/265 (18%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV--------------RLVFSQISNPTIY 91
++ +++ +K++HAQ++R + DP + V VF+QI PT+
Sbjct: 20 AISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLL 79
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
N ++ G + + ++A FY+ M +G+ F LFKSCA D+ + + +
Sbjct: 80 VWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHS 139
Query: 149 IKFGLASDSFLHNTLINMY------------------------SSCWC----LDQPDEAI 180
+K G S F+ N LI+MY +S C ++ + +
Sbjct: 140 MKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVL 199
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M+ NV+ ++VT++ ++A + + K +DE G + L TL+D Y
Sbjct: 200 DLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMY 259
Query: 241 CKCKFVSRAWDLFVKM----LFPWN 261
+ + A +F +M + WN
Sbjct: 260 GRRGMIDFAGRVFYQMKEKNIVSWN 284
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Query: 74 ADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
DY V+ + +Y N+++ Y + + A +++M + ++ M +
Sbjct: 233 GDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMG-YA 291
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
++ K+L ++ + D ++I YS Q EA+K+F M + VKP
Sbjct: 292 KVGNLVAAKKLFNEMP----SRDVISWTSMIIGYS---LAKQHAEAVKLFQEMMVSMVKP 344
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ +T+ L+A A L + VH + + S V + +L+D YCKC V +A +F
Sbjct: 345 DEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVF 404
Query: 254 VKM 256
M
Sbjct: 405 NDM 407
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 51/207 (24%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVF-------------SQISNPTI 90
L+ C+ +R L+ +H +++++ L D V ++ +I +
Sbjct: 501 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQV 560
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+I+ G++ EA F+ EM+ GL PD F F ++ +CA+ I + KQ+H Q
Sbjct: 561 VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 620
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK + D ++ +TL++MY+ C D PD
Sbjct: 621 IIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 678
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM+ ENV PN T V VL A
Sbjct: 679 EALRMFERMQKENVVPNHATFVAVLRA 705
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+Q+H +++ D C + V L+F + + N+I+
Sbjct: 413 QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQN 472
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLH 160
+ + L ++EM+ G+ PD F + S+ K+CA + + +H + IK GL SD+F+
Sbjct: 473 GHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVA 532
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
+T+++MY C +D+ +EA K F M +K
Sbjct: 533 STVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 592
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ T VL A + K++H + + + +TL+D Y KC + + +
Sbjct: 593 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 652
Query: 253 FVKM----LFPWN 261
F K+ WN
Sbjct: 653 FEKVEKRDFVSWN 665
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + +P + + N++V GY + + E+ + EM +G+ PDR F L KSC+ +
Sbjct: 147 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 206
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ + Q+H+ A+K GL D + L++MY C L D+A+ FY M N
Sbjct: 207 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL---DDALCFFYGMPERN 256
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 47/259 (18%)
Query: 45 VSLEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC-------- 93
V L+ CS + EL Q+HA ++T L D + ++ + + C
Sbjct: 196 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 255
Query: 94 -----NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+ + G + + EM GL + + S F+SCA + +QLH
Sbjct: 256 NWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 315
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
+ AIK +SD + ++++Y+ L
Sbjct: 316 AHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGI 375
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F M +++ + V+L V +A A + ++VH +SGF + + ++
Sbjct: 376 EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVL 435
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KCK + A+ +F M
Sbjct: 436 DLYGKCKALMEAYLIFQGM 454
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 41 HFCLVS-LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFS 83
HF + L+ C+ + + KQIH Q+++ + D C D LVF
Sbjct: 595 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 654
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
++ + N+++ GY L EA + M + ++P+ F ++ ++C+ +
Sbjct: 655 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 709
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCA-----DYHV--------RLVFSQISNPTI 90
L CS + L KQIHA +LR D D++ R +F Q+ I
Sbjct: 237 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 296
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ +++ GY + EA + EM G PD F S+ SC + +Q+H+
Sbjct: 297 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAY 356
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
IK L SD F+ N LI+MY+ L ++ EA
Sbjct: 357 TIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 416
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F+ M + P+ +T V++L A L K++H + + G + + L+D
Sbjct: 417 LELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDV 476
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y KC +V A +F +M + WN
Sbjct: 477 YSKCSYVKDARHVFEEMNEKDIVVWN 502
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 47/258 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQIS 86
C L C + L +Q+HA ++ +L D + VF ++
Sbjct: 334 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA 393
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + N+++ GY+++ EA +HEM V+ P F SL A ++ + KQ
Sbjct: 394 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQ 453
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+H IKFG++ D F + LI++YS C + +
Sbjct: 454 IHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLE 513
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+K++ ++ KPN T ++TA + LR ++ H + + G +
Sbjct: 514 NEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 573
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D Y KC + A +F
Sbjct: 574 LVDMYAKCGSIEEARKMF 591
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVF Q+S T T +I+ GYT + + +M ++PDR++ S+ +C+
Sbjct: 182 EARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACS 241
Query: 137 DI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQPD--------- 177
+ ++E KQ+H+ ++ G D + N LI+ Y+ C DQ
Sbjct: 242 MLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTT 301
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+K+F M KP+ +VLT+ L ++VH ++
Sbjct: 302 MISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKAN 361
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
S +K L+D Y K + A +F
Sbjct: 362 LESDEFVKNGLIDMYAKSNLLIDAKKVF 389
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSC 135
+ R+VF ++ + + T +S+V Y+ + EA + + ++ + G P+ F+ S+ ++C
Sbjct: 80 NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 139
Query: 136 ADI-YVEK--QLHSQAIKFGLASDSFLHNTLINMYS-------SCWCLDQPDE------- 178
+ VEK QLH ++ G D ++ +LI+ YS + DQ E
Sbjct: 140 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 199
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
++++F +M NV P+ + +VL+A + L K++H V
Sbjct: 200 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 259
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G V + L+D Y KC V LF +M+
Sbjct: 260 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 292
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 44/192 (22%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH +++ + D A + R VF +++ I N++ GYT
Sbjct: 452 KQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQH 511
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ EA Y + P+ F F +L + +++ +Q H+Q +K GL F+
Sbjct: 512 LENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVT 571
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
N L++MY+ C +++ +EA+ +F M E ++
Sbjct: 572 NALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQ 631
Query: 193 PNAVTLVNVLTA 204
PN VT V VL+A
Sbjct: 632 PNYVTFVAVLSA 643
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 145/339 (42%), Gaps = 91/339 (26%)
Query: 20 NSPLINLDNINNNNINSQYQAHFCLVS-LEKCSTMRELKQIHAQMLRTSLF--------- 69
N+PL+ + I N+ CL++ L+KC++M ELK+IHA ++ L
Sbjct: 3 NAPLLRRNAILNS----------CLINILDKCNSMLELKKIHALVITLGLSQDEPFVSKI 52
Query: 70 --FDPCAD-----YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
F +D Y ++FS + NPTI+ N+++RGY+ + + + +M+ G+
Sbjct: 53 LSFSALSDSGNINYSCWVLFSLL-NPTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVF 111
Query: 123 PDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASD-----SFLH-------------- 160
PD +P L K+ A + + +H+ IK G SD S +H
Sbjct: 112 PDYLTYPFLVKASARLLKRELGFSIHAHIIKHGFESDRFISNSLVHMYASFGDISCARYV 171
Query: 161 ------------NTLINMYSSCWCLD--------QPD--------------------EAI 180
N++++ + C + PD +A+
Sbjct: 172 FDGMPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAM 231
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F +M + KPN VT+V+VL A A L + +H V ++ + L T+L+D Y
Sbjct: 232 VVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMY 291
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
KC ++ A+D+F + ++ W AM + GLV
Sbjct: 292 AKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLV 330
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C + +L +++H ++R D C D RL+F ++ I
Sbjct: 203 LRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDI 262
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY + HE + M + PD S+ +C D + + +H+
Sbjct: 263 ISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322
Query: 148 AIKFGLASDSFLHNTLINMY--SSCW-----------CLD---------------QPDEA 179
I G A D + N+L MY + W C D P++A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKA 382
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I + M+ ++VKP+ +T+ VL+A A DL T +HK ++ S+V + L++
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 240 YCKCKFVSRAWDLF 253
Y KCK + +A D+F
Sbjct: 443 YSKCKCIDKALDIF 456
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA--- 136
VF ++S +++ N +V GY + EA YH M+ V G+ PD + FP + ++C
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------- 177
D+ +++H +++G D + N LI MY C +
Sbjct: 211 DLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
E +K+F+ M +V P+ +TL +V++A D R + +H V +GF
Sbjct: 271 GYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L Y A LF +M
Sbjct: 331 DISVCNSLTQMYLYAGSWREAEKLFSRM 358
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+FS++ I + +++ GY L +A Y M + PD ++ +CA D
Sbjct: 354 LFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGD 413
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK---------------- 181
+ +LH AIK L S + N LINMYS C C+D+ +
Sbjct: 414 LDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAG 473
Query: 182 -----------IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
IF+R ++PNA+TL L A AR L K +H V +G
Sbjct: 474 LRLNNRCFEALIFFRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDD 533
Query: 231 ELKTTLMDAYCKCKFVSRAWDLF---VKMLFPWN 261
L L+D Y +C ++ AW+ F K + WN
Sbjct: 534 FLPNALLDMYVRCGRMNIAWNQFNSQKKDVSSWN 567
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 31/162 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F I + + SI+ G N EA +F+ +M + L P+ + +CA I
Sbjct: 455 IFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGA 513
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSC-------------------WCL----- 173
K++H+ ++ G+ D FL N L++MY C W +
Sbjct: 514 LMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQKKDVSSWNILLTGY 573
Query: 174 ---DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
Q +++F RM V+P+ +T +++L +++ +R
Sbjct: 574 SERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVR 615
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 177 DEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEAI +++RM + VKP+ T VL DL + VH V G+ +++
Sbjct: 177 DEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNA 236
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
L+ Y KC V A LF +M + WN +G +GL
Sbjct: 237 LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGL 282
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 51/207 (24%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVF-------------SQISNPTI 90
L+ C+ +R L+ +H +++++ L D V ++ +I +
Sbjct: 459 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQV 518
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+I+ G++ EA F+ EM+ GL PD F F ++ +CA+ I + KQ+H Q
Sbjct: 519 VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 578
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK + D ++ +TL++MY+ C D PD
Sbjct: 579 IIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 636
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM+ ENV PN T V VL A
Sbjct: 637 EALRMFERMQKENVVPNHATFVAVLRA 663
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+Q+H +++ D C + V L+F + + N+I+
Sbjct: 371 QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQN 430
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLH 160
+ + L ++EM+ G+ PD F + S+ K+CA + + +H + IK GL SD+F+
Sbjct: 431 GHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVA 490
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
+T+++MY C +D+ +EA K F M +K
Sbjct: 491 STVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 550
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ T VL A + K++H + + + +TL+D Y KC + + +
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610
Query: 253 FVKM----LFPWN 261
F K+ WN
Sbjct: 611 FEKVEKRDFVSWN 623
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + +P + + N++V GY + + E+ + EM +G+ PDR F L KSC+ +
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ + Q+H+ A+K GL D + L++MY C L D+A+ FY M N
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL---DDALCFFYGMPERN 214
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 47/259 (18%)
Query: 45 VSLEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC-------- 93
V L+ CS + EL Q+HA ++T L D + ++ + + C
Sbjct: 154 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 213
Query: 94 -----NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+ + G + + EM GL + + S F+SCA + +QLH
Sbjct: 214 NWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 273
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
+ AIK +SD + ++++Y+ L
Sbjct: 274 AHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGI 333
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F M +++ + V+L V +A A + ++VH +SGF + + ++
Sbjct: 334 EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVL 393
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KCK + A+ +F M
Sbjct: 394 DLYGKCKALMEAYLIFQGM 412
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 41 HFCLVS-LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFS 83
HF + L+ C+ + + KQIH Q+++ + D C D LVF
Sbjct: 553 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 612
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
++ + N+++ GY L EA + M + ++P+ F ++ ++C+ +
Sbjct: 613 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 667
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 51/207 (24%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVF-------------SQISNPTI 90
L+ C+ +R L+ +H +++++ L D V ++ +I +
Sbjct: 459 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQV 518
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+I+ G++ EA F+ EM+ GL PD F F ++ +CA+ I + KQ+H Q
Sbjct: 519 VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 578
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK + D ++ +TL++MY+ C D PD
Sbjct: 579 IIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 636
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM+ ENV PN T V VL A
Sbjct: 637 EALRMFERMQKENVVPNHATFVAVLRA 663
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+Q+H +++ D C + V L+F + + N+I+
Sbjct: 371 QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQN 430
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLH 160
+ + L ++EM+ G+ PD F + S+ K+CA + + +H + IK GL SD+F+
Sbjct: 431 GHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVA 490
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
+T+++MY C +D+ +EA K F M +K
Sbjct: 491 STVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 550
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ T VL A + K++H + + + +TL+D Y KC + + +
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610
Query: 253 FVKM----LFPWN 261
F K+ WN
Sbjct: 611 FEKVEKRDFVSWN 623
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + +P + + N++V GY + + E+ + EM +G+ PDR F L KSC+ +
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ + Q+H+ A+K GL D + L++MY C L D+A+ FY M N
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL---DDALCFFYGMPERN 214
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 47/259 (18%)
Query: 45 VSLEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC-------- 93
V L+ CS + EL Q+HA ++T L D + ++ + + C
Sbjct: 154 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 213
Query: 94 -----NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+ + G + + EM GL + + S F+SCA + +QLH
Sbjct: 214 NWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 273
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
+ AIK +SD + ++++Y+ L
Sbjct: 274 AHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGI 333
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F M +++ + V+L V +A A + ++VH +SGF + + ++
Sbjct: 334 EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVL 393
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KCK + A+ +F M
Sbjct: 394 DLYGKCKALMEAYLIFQGM 412
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 41 HFCLVS-LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFS 83
HF + L+ C+ + + KQIH Q+++ + D C D LVF
Sbjct: 553 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 612
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
++ + N+++ GY L EA + M + ++P+ F ++ ++C+ +
Sbjct: 613 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 667
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LV I +PTIY+ +S++ T L ++ + M GLIPD + P+LFK CA++
Sbjct: 71 LVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELS 130
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
V KQ+H + GL D+F+ ++ +MY C + +A K+F RM ++V V
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC---GRMGDARKVFDRMSDKDV----V 183
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T +L A AR L V R+ ++ SG +++ ++ + + + A +F K+
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 32/212 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
L Q + + SI+ G EA + EM V G+ P+ PS+ +C +I
Sbjct: 342 ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNI 401
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ H A++ L + + + LI+MY+ C ++
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGF 226
+ E + IF + +KP+ ++ ++L+A + + K + +E G
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGI 521
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+E + +++ + + A+DL +M F
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF 553
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 73 CADYHVRLVFSQISN---PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
C + VR++ S+ I + N I+ G+ H EA + + ++ G PD+
Sbjct: 197 CLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVS 256
Query: 130 SLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
S+ S D + + + +H IK GL D + + +I+MY
Sbjct: 257 SVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M++ VKPN VT+ ++L A L + H +V + + L+
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALI 430
Query: 238 DAYCKCKFVSRAWDLF----VKMLFPWNN 262
D Y KC ++ + +F K L WN+
Sbjct: 431 DMYAKCGRINLSQIVFNMMPTKNLVCWNS 459
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 36/241 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R+VF +++ + + N+++ GY AFL + M GL D L +CAD+
Sbjct: 216 RMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADL 275
Query: 139 YVEKQ---LHSQAIKFGLAS-DSFLHNTLINMYSSCWCL--------------------- 173
K+ +H A++ + + + F N+LI MY +C C+
Sbjct: 276 KAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSM 335
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
E++++F RM ++ P+ VT + VL A + LR +H + + GF
Sbjct: 336 ILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGF 395
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
++ + T L+D Y KC ++ + +F +M P + W SA V GL GR A
Sbjct: 396 DANTIVGTALVDMYSKCGSLACSRRVFDEM--PDKSLVSW--SAMVAGYGLHGRGREAIS 451
Query: 287 I 287
I
Sbjct: 452 I 452
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 116/277 (41%), Gaps = 48/277 (17%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL-------------FFDPCADY-HVRLV 81
+ Q L S + ++ +Q+HA M+ S+ F+ C ++
Sbjct: 58 TSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVI 117
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---I 138
F I + N ++RGY + L ++ + Y EM+ G D F +P + K+C D +
Sbjct: 118 FDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLV 177
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMY-------SSCWCLDQPDE------------- 178
+ +++HS+ + GL SD ++ N+L+ MY ++ D+ E
Sbjct: 178 EIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGY 237
Query: 179 --------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
A +F M + + TL+ +L+A A + ++ K +H + ++
Sbjct: 238 AKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYN 297
Query: 231 ELKT-TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ T +L++ YC C + A LF ++ W + W
Sbjct: 298 KFFTNSLIEMYCNCNCMVDARRLFERV--RWKDTVSW 332
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 48/206 (23%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL------FFDPCADYH--------VRLVFSQISNPT 89
L C+ ++ +K+ IH +R S+ F + + + R +F ++
Sbjct: 269 LSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKD 328
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHS 146
+ NS++ GY E+ + M + G PD+ F ++ +C I + +HS
Sbjct: 329 TVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHS 388
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL--------DQPD--------------------E 178
+K G +++ + L++MYS C L + PD E
Sbjct: 389 YLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGRE 448
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTA 204
AI I M+ +V P+ ++L+A
Sbjct: 449 AISILDGMKANSVIPDNGVFTSILSA 474
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 35/230 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
LVF +S T+ T S++ Y + L EA +HEM +G+ PD F ++ +CA
Sbjct: 54 LVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNG 113
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
+ K +H+ + + S+ F+ N L++MY+ C ++
Sbjct: 114 SLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIG 173
Query: 176 -------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
P+EA+ +F M +E +KP+ TL +L A A L K VH + +GF+S
Sbjct: 174 GYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFS 232
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQGL 277
++ L+D Y KC A LF + P + W M A G G
Sbjct: 233 DQQVANALVDMYVKCGVPVLARLLFD--MIPTKDLITWTVMIAGYGMHGF 280
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHV--------RLVFSQISNPTI 90
L C+++ L K++H +LR F D D +V RL+F I +
Sbjct: 206 LPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDL 265
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
T ++ GY + A ++EM G+ PD F S+ +C+
Sbjct: 266 ITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACS 311
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 17/141 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY--------------HVRLVFSQISNPTIYT 92
L+ T ++ QIHAQ++ T+L D A + LVF+QI P +
Sbjct: 18 LQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFI 77
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEKQL-HSQAI 149
CN++V+ YT + A FY EM +GL+ D + +P + K+C + +E L +A+
Sbjct: 78 CNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAV 137
Query: 150 KFGLASDSFLHNTLINMYSSC 170
K G D F+ N LI+MY C
Sbjct: 138 KRGFGGDVFVVNGLISMYCRC 158
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + + ++ GY EA + +M+ QG+ PDR +C+ +
Sbjct: 259 REIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQL 318
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
Q +H + + D + L++MY C DEA IF M NV
Sbjct: 319 GALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC---GSXDEARXIFNSMPERNVVSWN 375
Query: 196 VTLVNV 201
V +V +
Sbjct: 376 VMIVGL 381
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+F ++ + + + ++ GY K + A +F+ M + L+ M + ++
Sbjct: 198 MFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDG-YAKVGEME 256
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199
V +++ + ++ + S S + I+ Y+ EA+ +F +M + +KP+ V++V
Sbjct: 257 VAREIFBKMLQKNVISWSIM----IDGYAXH---RDSKEALNLFRQMLCQGIKPDRVSVV 309
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
++A ++ L + +H + + + ++T L+D Y KC A +F M P
Sbjct: 310 GAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSM--P 367
Query: 260 WNNYGQW-AMSATVGPQG 276
N W M +G G
Sbjct: 368 ERNVVSWNVMIVGLGMNG 385
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 115/261 (44%), Gaps = 51/261 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADY----------------HVRLVFSQISN 87
+ C+ M L +Q+H+Q +R L D C R +F QI +
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337
Query: 88 PTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+++ +++ GY K + EA + MI+ +IP+ F F S K+CA++ + +Q
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+ + A+K G +S + + N+LI+MY+ +D
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+++F +E + + +A T ++L+ A + +++H V +SG + +
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+ Y +C + A+ +F M
Sbjct: 518 LISMYSRCGNIESAFQVFEDM 538
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 39/193 (20%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLI 164
EA + +MI G PDRF + +CA+ + + +QLHSQAI+ GL D + LI
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313
Query: 165 NMYSSCWC----------LDQ----------------------PDEAIKIFYRMEIENVK 192
NMY+ C DQ +EA+ +F M + +V
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI 373
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS---RA 249
PN T + L A A LR ++V + GF S + +L+ Y + + +A
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433
Query: 250 WD-LFVKMLFPWN 261
+D LF K L +N
Sbjct: 434 FDILFEKNLISYN 446
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 21/244 (8%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R F + + + N+++ Y KNL+ EA ++E+ QG+ F F SL A
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYA-KNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194
I +Q+H++ IK GL + + N LI+MYS C + A ++F ME NV
Sbjct: 490 IGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC---GNIESAFQVFEDMEDRNV--- 543
Query: 195 AVTLVNVLTARAR-ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
++ +++T A+ + ++ HK ++E G + ++ A V+ W F
Sbjct: 544 -ISWTSIITGFAKHGFATQALELFHKMLEE-GVRPNEVTYIAVLSACSHVGLVNEGWKHF 601
Query: 254 VKMLFPWNNYG----QWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHV 309
M + +G + V G G S A Q P KA L + + L V
Sbjct: 602 KSM---YTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRV 658
Query: 310 PGVL 313
G L
Sbjct: 659 HGNL 662
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R +F + N + + +++ GY +L EA + ++ G PD F S+ SC
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGS 351
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------DEAI----- 180
A I+ +Q+H+ IK L SD ++ N LI+MY+ C L + D+AI
Sbjct: 352 LAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAM 411
Query: 181 --------------KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+IF +M ++KP+ +T V++L + DL K++H + +SG
Sbjct: 412 IEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGT 471
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + L+D Y K V A +F M + WN
Sbjct: 472 SLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWN 510
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 48/215 (22%)
Query: 42 FCLVSLEKCSTMR---EL-KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQ 84
VSL S+ R EL KQIH ++++ D A + +LVFS
Sbjct: 441 LTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSL 500
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCADIYVE 141
+ N + N+++ G EA + + V GL P+ F F +L + A I+
Sbjct: 501 MQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHG 560
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------------- 175
+Q H+Q IK G SD + N LI+MY+ C +++
Sbjct: 561 QQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQH 620
Query: 176 --PDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+EA+ +F ME V+PN VT V+VL+A A A
Sbjct: 621 GHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHA 655
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 105/271 (38%), Gaps = 51/271 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQIS 86
C L C ++ + +Q+HA +++ L D R VF ++
Sbjct: 342 CTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALA 401
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCADIYVEKQ 143
+ N+++ GY A + +M L P F SL S +D+ + KQ
Sbjct: 402 EDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQ 461
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+H +K G + D + + LI++YS +D +
Sbjct: 462 IHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNER 521
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+K+F R+ + + PN T V ++T + + ++ H + ++G S +
Sbjct: 522 GEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNA 581
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
L+D Y KC F+ LF L WN+
Sbjct: 582 LIDMYAKCGFIEEGRLLFESTLGKDVICWNS 612
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 37/200 (18%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVE--KQ 143
NP +T +++ GY+ A + M + G+ PDRF+ S +C+ + +VE +Q
Sbjct: 202 NPVTWT--AVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQ 259
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC----------L 173
+H A + SD+ + N LI++Y C W L
Sbjct: 260 IHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSL 319
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
D EA+ +F+++ +P+ ++L + + ++VH V ++ S +K
Sbjct: 320 DT--EAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVK 377
Query: 234 TTLMDAYCKCKFVSRAWDLF 253
L+D Y KC+ ++ A +F
Sbjct: 378 NALIDMYAKCEHLTEARAVF 397
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI------PDRFMFPSL 131
R +F + + + + S + Y +A L + G P+ F+ S
Sbjct: 84 ARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASA 143
Query: 132 FKSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------- 174
++CA + Q+H A K GL ++ F+ L+N+Y+ +D
Sbjct: 144 LRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNP 203
Query: 175 --------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
Q A+++F RM ++ V+P+ L + +A + + +++H
Sbjct: 204 VTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGY 263
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ S + L+D YCKC + A LF M
Sbjct: 264 AYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSM 299
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL------------FFDPC-ADYHVRLVFSQISNPTI 90
L CS +++LK IH L+ + ++ C + VF + + +
Sbjct: 249 LSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNV 308
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
T NS+ Y N + + EM + G+ PD S+ +C+ D+ K +H
Sbjct: 309 ITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGF 368
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEA 179
A+K G+ D F+ L+N+Y++C C+ + P +
Sbjct: 369 AVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKG 428
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F M + VKP+ VT++++L A + +DL++ K +H G V + L+
Sbjct: 429 LNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSL 488
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC V A +F L P W
Sbjct: 489 YAKCVCVREAQVVF--DLIPHREVASW 513
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 35/209 (16%)
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
L +EA Y +G+ PD+ +F ++ K+CA D KQ H A + G+ SD +
Sbjct: 19 GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78
Query: 161 NTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENVK 192
N I+ Y C C++ P + + +F +M + VK
Sbjct: 79 NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N +T+ ++L + +DL++ K +H V G V + + ++ Y KC V A +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198
Query: 253 FVKM----LFPWNNYGQWAMSATVGPQGL 277
F M + WN+ ++ +GL
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGL 227
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 35/234 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + + T NS+ Y N + + +M + + + S+ C+D+
Sbjct: 95 RRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDL 154
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
K++H ++ G+ D F+ + +N Y+ C C+ +
Sbjct: 155 QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLS 214
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
P + + +F M ++ VKP+ VT+ +L+A + +DL++ K +H + G
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV 274
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
+V + L++ Y C V A +F M + WN+ ++ +GL
Sbjct: 275 ENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGL 328
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 45/230 (19%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
L CS +++LK IH +R + D ++ CN+++ Y
Sbjct: 451 LHACSDLQDLKSGKVIHGFAVRHGMVED------------------VFVCNALLSLYAKC 492
Query: 104 NLHHEAFLFY----HEMIVQ--GLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS 157
EA + + H + G++ F K +Y+ Q++ +K +D
Sbjct: 493 VCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKG---LYMFSQMNRDEVK----ADE 545
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+ +I C + +EA++IF +M+ KP+ T+ ++L A + + LR K +
Sbjct: 546 ITWSVVI---GGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEI 602
Query: 218 HKCVDESGFWSHVELKTT--LMDAYCKCKFVSRAWDLF----VKMLFPWN 261
H V W +L T L+D Y KC +S + ++F +K +F WN
Sbjct: 603 HCYVFRH--WKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWN 650
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 115/261 (44%), Gaps = 51/261 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADY----------------HVRLVFSQISN 87
+ C+ M L +Q+H+Q +R L D C R +F QI +
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337
Query: 88 PTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+++ +++ GY K + EA + MI+ +IP+ F F S K+CA++ + +Q
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+ + A+K G +S + + N+LI+MY+ +D
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+++F +E + + +A T ++L+ A + +++H V +SG + +
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+ Y +C + A+ +F M
Sbjct: 518 LISMYSRCGNIESAFQVFEDM 538
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 39/193 (20%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLI 164
EA + EMI+ G PDRF + +CA+ + + +QLHSQAI+ GL D + LI
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313
Query: 165 NMYSSCWC----------LDQ----------------------PDEAIKIFYRMEIENVK 192
NMY+ C DQ +EA+ +F M + +V
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI 373
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS---RA 249
PN T + L A A LR ++V + GF S + +L+ Y + + +A
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433
Query: 250 WD-LFVKMLFPWN 261
+D LF K L +N
Sbjct: 434 FDILFEKNLISYN 446
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 21/244 (8%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R F + + + N+++ Y KNL+ EA ++E+ QG+ F F SL A
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYA-KNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194
I +Q+H++ IK GL + + N LI+MYS C + A ++F ME NV
Sbjct: 490 IGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC---GNIESAFQVFEDMEDRNV--- 543
Query: 195 AVTLVNVLTARAR-ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
++ +++T A+ + ++ HK ++E G ++ ++ A V+ W F
Sbjct: 544 -ISWTSIITGFAKHGFATQALELFHKMLEE-GVRPNLVTYIAVLSACSHVGLVNEGWKHF 601
Query: 254 VKMLFPWNNYG----QWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHV 309
M + +G + V G G S A Q P KA L + + L V
Sbjct: 602 KSM---YTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRV 658
Query: 310 PGVL 313
G L
Sbjct: 659 HGNL 662
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LV I +PTIY+ +S++ T L ++ + M GLIPD + P+LFK CA++
Sbjct: 71 LVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELS 130
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
V KQ+H + GL D+F+ ++ +MY C + +A K+F RM ++V V
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC---GRMGDARKVFDRMSDKDV----V 183
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T +L A AR L V R+ ++ SG +++ ++ + + + A +F K+
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 32/212 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
L Q + + SI+ G EA + EM V G+ P+ PS+ +C +I
Sbjct: 342 ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNI 401
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ H A++ L + + + LI+MY+ C ++
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGF 226
+ E + IF + +KP+ ++ ++L+A + + K + +E G
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGI 521
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+E + +++ + + A+DL +M F
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF 553
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 73 CADYHVRLVFSQISN---PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
C + VR++ S+ I + N I+ G+ H EA + + ++ G PD+
Sbjct: 197 CLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVS 256
Query: 130 SLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
S+ S D + + + +H IK GL D + + +I+MY
Sbjct: 257 SVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M++ VKPN VT+ ++L A L + H +V + + L+
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALI 430
Query: 238 DAYCKCKFVSRAWDLF----VKMLFPWNN 262
D Y KC ++ + +F K L WN+
Sbjct: 431 DMYAKCGRINLSQIVFNMMPTKNLVCWNS 459
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 134/309 (43%), Gaps = 52/309 (16%)
Query: 33 NINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRT-------------SLFFDPCADYHVR 79
N ++Q + L +R L+Q+HA ++ + SL + + R
Sbjct: 84 NFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYAR 143
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
+F + NP + +S+++ + + LFY M+ G + F S+ K+CAD+
Sbjct: 144 RLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLS 203
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W----- 171
+ K++HS + G SD ++ LI +Y+ W
Sbjct: 204 ALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLIS 263
Query: 172 CLDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
DQ P E+I +F+ M +P++ T+V++L++ ++ L +H D +GF
Sbjct: 264 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL 323
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHS----T 283
+V L T+L++ Y +C VS+A ++F M N W AM + G G GR + T
Sbjct: 324 NVVLGTSLINMYTRCGNVSKAREVFDSM--KERNVVTWTAMISGYGMHGY-GRQAMELFT 380
Query: 284 AHQISGPCP 292
+ GP P
Sbjct: 381 EMRAYGPRP 389
>gi|302804262|ref|XP_002983883.1| hypothetical protein SELMODRAFT_267 [Selaginella moellendorffii]
gi|300148235|gb|EFJ14895.1| hypothetical protein SELMODRAFT_267 [Selaginella moellendorffii]
Length = 890
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 35/233 (15%)
Query: 59 IHAQMLRTSLF--FDPCADYHVRLVFSQIS---NPTIYTCNSIVRGYTN-KNLHHEAFLF 112
+H ++RT+L F C D + Q + T+ + N ++ Y+ + H+AF
Sbjct: 200 LHDIVVRTALIGMFSRCGDIRSCEMLFQTTVCHERTLSSWNVMLGVYSEHEKQQHKAFHL 259
Query: 113 YHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-- 170
+ M++QGL+P+R F +L +C + K + ++ GL D + L++MY C
Sbjct: 260 FRRMLLQGLLPERVSFLALLSACRSLDCGKSVEGWILEAGLECDLVVGAALVSMYGRCGS 319
Query: 171 -------------------W------CLDQ--PDEAIKIFYRMEIENVKPNAVTLVNVLT 203
W C+D A+++F RM+++ VK N VTLV+VL+
Sbjct: 320 LGDAFQVFQNFENDADMVFWNSMIAACVDAHASSMALELFRRMQLQGVKHNKVTLVSVLS 379
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A A+ ++ K++H+ + +G L+ L++ Y C V A ++FV +
Sbjct: 380 ACAKCHNISYGKQLHEHLVVTGIDRDEYLQNALLNLYGVCGSVKDALNVFVNV 432
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 117/291 (40%), Gaps = 51/291 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTI 90
L + KC + KQ+H ++ T + + C L VF + T+
Sbjct: 378 LSACAKCHNISYGKQLHEHLVVTGIDRDEYLQNALLNLYGVCGSVKDALNVFVNVERWTV 437
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQ 147
+C + + ++ LH EA + + M+++G+ D+ + SL +S + + E+ L ++
Sbjct: 438 VSCTATMAALSDNGLHAEAMVLFRMMLLEGVAADKVTYISLLQSSRNFHPEELLRVANAG 497
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD-------------------------------QP 176
GL D + ++ YS C ++ Q
Sbjct: 498 IHALGLVEDVIIATGVLRSYSQCKQVERAVQVFNKMRFAGQDDAVTWTSMLSAYADNGQH 557
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++A+++ +RM++E VKP+ V L A A LR VH V+ +G + + + L
Sbjct: 558 EKAVELLHRMQLEGVKPDKSAFVKALNACAACGRLRLGALVHANVEAAGATLNAGVGSAL 617
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+ Y + +LF K+ P + W +A V G+H A Q+
Sbjct: 618 VSLYGSLGKLETGRELFEKL--PHKDVFSW--TALVSAYSDAGQHEAAVQV 664
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 31/207 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF ++S + +++ GY L EA Y +M G++P ++ S+ SC
Sbjct: 96 ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTK 155
Query: 136 ADIYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP---------- 176
A+++ + + +H+Q K G S++F+ N LI +Y C D P
Sbjct: 156 AELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTL 215
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ A++IF M+ + P+ VT+ ++L A A DL+ ++H + ++G
Sbjct: 216 ISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGM 275
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
S ++ +L+D Y KC V A +F
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIF 302
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS---------LFFDPCADY----HVRLVFSQISNPTI 90
L C+ E+ +QIH+ ++T + D + Y R V + +
Sbjct: 352 LRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
+ S++ GY +A + EM G+ PD S CA I +Q +H++
Sbjct: 412 VSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHAR 471
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
G + D + N L+N+Y+ C + + +EA
Sbjct: 472 VYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F RM+ VK N T V+ L+A A +++ K++H V ++G E+ L+
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC A F +M
Sbjct: 592 YGKCGSFEDAKMEFSEM 608
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 111/257 (43%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD------------PCADYHVRLVFSQISNPT-I 90
L C+++ +L+ Q+H+ + + + D C D LV + N T +
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNV 310
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
N I+ + N ++F + +M G+ P++F +P + ++C +I + +Q+HS
Sbjct: 311 VLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSL 370
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
++K G SD ++ LI+MYS L++ +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDA 430
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F M+ + P+ + L + ++ A + +R ++H V SG+ V + L++
Sbjct: 431 LAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNL 490
Query: 240 YCKCKFVSRAWDLFVKM 256
Y +C + A+ F ++
Sbjct: 491 YARCGRIREAFSSFEEI 507
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 35/232 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCA 136
R VF +I + + NS++ GY EA + EM + G PD S+ +C
Sbjct: 170 ARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACG 229
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
D+ + + + ++ G+ +S++ + LI+MY+ C L
Sbjct: 230 ELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNA 289
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
DEAI +F+ M+ + V N +TL VL+A A L K++ + + G
Sbjct: 290 VISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRG 349
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
F + + T L+D Y KC ++ A +F +M P N W AM + + G
Sbjct: 350 FQHDIFVATALIDMYAKCGSLASAQRVFKEM--PQKNEASWNAMISALASHG 399
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 120/281 (42%), Gaps = 54/281 (19%)
Query: 43 CLVSLEK-CSTMRELKQIHAQMLRTSLFFDP-----CADYHVR------LVFSQIS-NPT 89
CLV L K CS+ + L+Q+HAQM+ S P H++ L+FS I+ +P
Sbjct: 20 CLVFLAKQCSSSKTLQQVHAQMVVKSSIHSPNNHLLSKAIHLKNFTYASLLFSHIAPHPN 79
Query: 90 IYTCNSIVRGYTNKNLHHE-AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLH 145
Y N ++R T H+ A +H M+ L P+ F FP F SCA++ V + H
Sbjct: 80 DYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAH 139
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW-------CLDQ---------------------PD 177
S K L SD ++LI MYS C D+
Sbjct: 140 SLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAR 199
Query: 178 EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+++F M + +P+ ++LV+VL A DL + V V E G + + + L
Sbjct: 200 EAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSAL 259
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQWAMS 269
+ Y KC + A +F M + WN Y Q M+
Sbjct: 260 ISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMA 300
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 35/223 (15%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R +F ++ + T N+++ GY + EA +H M + ++
Sbjct: 262 MYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKIT 321
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------- 173
++ +CA I + KQ+ A + G D F+ LI+MY+ C L
Sbjct: 322 LTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMP 381
Query: 174 -----------------DQPDEAIKIFYRMEIE--NVKPNAVTLVNVLTARARARDLRTV 214
+ EA+ +F M E +PN +T V +L+A A +
Sbjct: 382 QKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEG 441
Query: 215 KRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R+ + G +E + ++D + + AWDL KM
Sbjct: 442 YRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKM 484
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 51/278 (18%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISN 87
L L+ CS+ L K++HAQ++ S++ + R VF +
Sbjct: 162 LSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHI 221
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQL 144
+ T N +V GY +AF ++ M GL P++ F S+ C + K +
Sbjct: 222 RDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAV 281
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------------------- 176
H+Q + GL D + +LI MY++C ++
Sbjct: 282 HAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNI 341
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++A +F M+ E ++P+ +T ++++ A A + +L + +H VD +GF + + + T L
Sbjct: 342 EDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTAL 401
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGP 274
+ Y KC + A +F M P + W SA +G
Sbjct: 402 VHMYAKCGAIKDARQVFDAM--PRRDVVSW--SAMIGA 435
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
R +F + N T+ T N+++ GY EAF + +M+ +GL P F S+ +C
Sbjct: 110 EARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACS 169
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
A + K++H+Q + G SD + L++MY +D
Sbjct: 170 SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV 229
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
++A ++FYRM+ +KPN ++ +++L L K VH +G
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + T+L+ Y C + A +F M
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNM 320
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C + +L K++H ++R D C D RL+F ++ I
Sbjct: 203 LRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDI 262
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY + HE + M + PD S+ +C D + + +H+
Sbjct: 263 ISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322
Query: 148 AIKFGLASDSFLHNTLINMY--SSCWCLDQ--------------------------PDEA 179
I G A D + N+L MY + W + PD+A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I + M+ ++VKP+ +T+ VL+A A DL T +HK ++ S+V + L++
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 240 YCKCKFVSRAWDLF 253
Y KCK + +A D+F
Sbjct: 443 YSKCKCIDKALDIF 456
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA--- 136
VF ++S +++ N +V GY + EA YH M+ V G+ PD + FP + ++C
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------- 177
D+ K++H +++G D + N LI MY C +
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
E +++F+ M +V P+ +TL +V++A D R + +H V +GF
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L Y A LF +M
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRM 358
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 39/232 (16%)
Query: 66 TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
T ++ + + +FS++ I + +++ GY L +A Y M + PD
Sbjct: 339 TQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDE 398
Query: 126 FMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182
++ +CA D+ +LH AIK L S + N LINMYS C C+D+ A+ I
Sbjct: 399 ITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDK---ALDI 455
Query: 183 FYRMEIENV------------------------------KPNAVTLVNVLTARARARDLR 212
F+ + +NV +PNA+TL L A AR L
Sbjct: 456 FHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALM 515
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF---VKMLFPWN 261
K +H V +G L L+D Y +C ++ AW F K + WN
Sbjct: 516 CGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWN 567
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 177 DEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+ +++RM + VKP+ T VL DL K VH V G+ +++
Sbjct: 177 DEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNA 236
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+ Y KC V A LF +M + WN
Sbjct: 237 LITMYVKCGDVKSARLLFDRMPRRDIISWN 266
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 45/260 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTC 93
+ CS+ R Q+HAQ ++ + C + H V +VF ++ + +
Sbjct: 294 MSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISW 353
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL 153
N I+ Y N + A L + +M G+ PD F SL S + + K + K GL
Sbjct: 354 NIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGL 413
Query: 154 ASDSFLHNTLINMYSSCWCLDQ----------PD------------------EAIKIFYR 185
S + N L++ +S ++Q P+ + ++ FY
Sbjct: 414 NSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYE 473
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
+ + +KPNA TL VL+ A LR K++H + SG +S L L+ Y KC
Sbjct: 474 LLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGD 533
Query: 246 VSRAWDLFVKM----LFPWN 261
+ + +F M + WN
Sbjct: 534 LDWSLRIFNVMNGRDIVSWN 553
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 35/202 (17%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKF 151
T N ++ G + EA + + EM L P F S+ SC+ V Q+H+QAIK
Sbjct: 254 TFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSARVSHQVHAQAIKM 313
Query: 152 GLASDSFLHNTLINMYSSCWCL-------DQPDE---------------------AIKIF 183
G + + + N + MYSSC L D+ +E AI F
Sbjct: 314 GFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAF 373
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+M+ ++P+ T+ ++L A + L VK V ++G S +E+ L+ A+ K
Sbjct: 374 LQMQRAGIEPDEFTIGSLL---ASSESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKH 430
Query: 244 KFVSRAWDLFVKM----LFPWN 261
+ +A+ +F M L WN
Sbjct: 431 GQIEQAYQVFNNMSSPNLISWN 452
>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
Length = 721
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 55/286 (19%)
Query: 45 VSLEKCSTMREL---KQIHAQM-----LRTSLFFD--------PCADYH-VRLVFSQISN 87
+L CS++ +L ++IHA++ +R S+ D C D + VF +I
Sbjct: 144 TALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPA 203
Query: 88 PTIYTCNSIVRGYTNKN-LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS 146
+ + N+++ Y HH+A + +M G+ P R F + +C D+ +++H+
Sbjct: 204 KNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHA 263
Query: 147 QAIKFGL---ASDSFLHNTLINMYSSCWCL-------------DQ--------------- 175
+ ++ GL D + N L+NMY+ C L DQ
Sbjct: 264 RIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGL 323
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-----HV 230
E+I++F M++E + + T +V+TA + L KR+HK V E +V
Sbjct: 324 GKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNV 383
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
++T L+ Y KC + +A +F K + N+ AM A QG
Sbjct: 384 VVETALVSMYGKCGTLEQAKAVF-KAMTTKNSVSWNAMLAACAHQG 428
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 96/242 (39%), Gaps = 44/242 (18%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F I + I++ N I+ Y ++ A + +M V P F + +C+
Sbjct: 94 EARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMDVP---PTAMTFATALSACS 150
Query: 137 ---DIYVEKQLHSQ-AIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------- 177
D+ +++H++ G+ L + +MY+ C L
Sbjct: 151 SLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWN 210
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+A+ +F +M V+P T V VL A D+ +++++H + E
Sbjct: 211 ALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGA---CNDVTSLEKIHARIVE 267
Query: 224 SGFW---SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
+G V ++ L++ Y KC + A D+F KM + M AT QGL G+
Sbjct: 268 TGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQ-RRDQVSMNVMIATFAQQGL-GK 325
Query: 281 HS 282
S
Sbjct: 326 ES 327
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF +I+ P I + N+I+ G + H A + +M G+ P+ F S K+CA + +
Sbjct: 296 VFEEIAKPDIVSWNAIIAGCALREYHCWALELFGKMNRSGMCPNMFTISSALKACAGMGL 355
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------------ 177
+ +QLHS +K + SDSFL LI+MYS C + P+
Sbjct: 356 KELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITG 415
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +F M E V N +TL VL + A + ++H +SGF
Sbjct: 416 HSQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHICSQIHALSLKSGFQFD 475
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ +L+D Y KC + A +F
Sbjct: 476 NYVANSLIDTYGKCGRIKDATRIF 499
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 51/289 (17%)
Query: 46 SLEKCSTM--REL-KQIHAQMLRTSLFFDP-----CADYH--------VRLVFSQISNPT 89
+L+ C+ M +EL +Q+H+ +L+ + D D + RL+F+ +
Sbjct: 346 ALKACAGMGLKELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERD 405
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHS 146
+ N+ + G++ EA + M +G+ ++ ++ KS A + V+ Q+H+
Sbjct: 406 LIVWNAAITGHSQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHICSQIHA 465
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
++K G D+++ N+LI+ Y C + Q +E
Sbjct: 466 LSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAYSQDGQGEE 525
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+K++ M+ ++P++ ++L A A K+VH V + GF S + +L++
Sbjct: 526 ALKLYLEMQDRKIRPDSFVCSSLLNACANLSAYEQGKQVHVHVLKFGFISDIFAGNSLVN 585
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
Y KC + A F ++ P W SA +G G A Q+
Sbjct: 586 MYAKCGSIDDADRAFSEI--PERGIVSW--SAMIGGFAQHGHGKEALQL 630
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 58 QIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKN 104
QIHA L++ FD C +F + + S++ Y+
Sbjct: 462 QIHALSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAYSQDG 521
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHN 161
EA Y EM + + PD F+ SL +CA++ KQ+H +KFG SD F N
Sbjct: 522 QGEEALKLYLEMQDRKIRPDSFVCSSLLNACANLSAYEQGKQVHVHVLKFGFISDIFAGN 581
Query: 162 TLINMYSSCWCLDQPD----------------------------EAIKIFYRMEIENVKP 193
+L+NMY+ C +D D EA+++F RM + + P
Sbjct: 582 SLVNMYAKCGSIDDADRAFSEIPERGIVSWSAMIGGFAQHGHGKEALQLFNRMLEDGIPP 641
Query: 194 NAVTLVNVLTA 204
N + + +V +A
Sbjct: 642 NHMYVYDVPSA 652
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 80/285 (28%)
Query: 57 KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
K+IHA++++ L DP C + + R + + + P + + ++++ GY+
Sbjct: 126 KEIHARVIKLGLSQDPKIRNLLINLYSKCQFFKYARKMVDESTEPDLVSWSALISGYSQN 185
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQ----------------- 143
EA ++EM + G+ + F FPSL K+C D+++ +Q
Sbjct: 186 GFGKEAISAFYEMHLLGVKCNEFTFPSLLKACTSTTDMWLGRQDMILSGIRPNEFSLSCM 245
Query: 144 ---------------LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PDE 178
+H IK D F N L++MY+ L++ PD
Sbjct: 246 INACTGLEDSSQGRKIHGYLIKLAYDLDLFSANALVDMYAKVGTLEEAIRVFEEIAKPDI 305
Query: 179 ------------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
A+++F +M + PN T+ + L A A +++H
Sbjct: 306 VSWNAIIAGCALREYHCWALELFGKMNRSGMCPNMFTISSALKACAGMGLKELGRQLHSS 365
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + S L L+D Y KC ++ A LF M L WN
Sbjct: 366 LLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWN 410
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
L+ I +PT+Y+ +S++ T L ++ + M GLIPD + P+LFK CA++
Sbjct: 71 LILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELS 130
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
KQ+H A GL D+F+ +L +MY C + +A K+F RM ++V V
Sbjct: 131 AFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRC---GRMGDARKVFDRMSEKDV----V 183
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T +L AR L V R+ +++SG ++ ++ + + + A +F KM
Sbjct: 184 TCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
P I + N I+ G+ H EA + + +M G PD+ S+ S D + + +Q
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQ 273
Query: 144 LHSQAIKFGLASDSFLHNTLINMYS 168
+H IK GL D + + +++MY
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYG 298
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ + SI+ G EA + EM V G+ P+R PS+ +C +I + H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHG 412
Query: 147 QAIKFGLASDSFLHNTLINMYSSC 170
A++ L D + + LI+MY+ C
Sbjct: 413 FAVRVHLLDDVHVGSALIDMYAKC 436
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 52/223 (23%)
Query: 57 KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTIYTCNSIVRGYTNK 103
+QIH +++ L D C Y + +F + CN+ + G +
Sbjct: 272 RQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRN 331
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
L +A + LFK E+++ + +
Sbjct: 332 GLVDKALEMF----------------GLFK-------EQKMELNVVSW------------ 356
Query: 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
++ + C + EA+++F M++ VKPN VT+ ++L A L + H
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVR 416
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
V + + L+D Y KC + + +F K L WN+
Sbjct: 417 VHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNS 459
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 41/241 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
+E C+ +++K I M S VR +F + + + N+I+ G L+
Sbjct: 232 MEACNLGQQIKDISHSMSVDS----------VRKIFEMMPEKDLVSWNTIIAGNARNGLY 281
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPS---LFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
E EM L PD F S L DI K++H +I+ GL ++ ++ ++L
Sbjct: 282 GETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSL 341
Query: 164 INMYSSC--------------------W------CLDQP--DEAIKIFYRMEIENVKPNA 195
I+MY+ C W C+ DE +K F +M + +KP +
Sbjct: 342 IDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKS 401
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+ +++ A A L K++H + +GF ++ + ++L+D Y KC + A +F +
Sbjct: 402 YSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDR 461
Query: 256 M 256
M
Sbjct: 462 M 462
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F+ + P S++R YT+ L H++ + M+ GL PD +FPS+ K+CA D
Sbjct: 64 LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMD 123
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
+ + + LH I+ GL D + N L+NMYS
Sbjct: 124 LNLGESLHGYIIRVGLDFDLYTGNALMNMYS 154
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 34/217 (15%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE 141
F +I + + N ++ Y++ EA +H M+++G+ P+ ++ SC
Sbjct: 15 FGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFREL 74
Query: 142 KQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE-------------------- 178
+ +H+ +++ G ++ + L+NMY C L
Sbjct: 75 RDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVY 134
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A+++F RM +E VK N +T +NVL + LR K +H CV ES
Sbjct: 135 SLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLD 194
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
V + T L++ Y KC ++ A +F M P + G W
Sbjct: 195 VFVNTALVNTYTKCGSLTDARKVFDGM--PCRSVGTW 229
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF Q+ P + + NS++ Y H +A + M QG+ PDR F ++ +C
Sbjct: 417 RTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIG 476
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
+ K +H + GL + +L+NMY+ LD +
Sbjct: 477 SHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLI 536
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA++ + ++++E + + VT ++VL A + L K +H E G
Sbjct: 537 NGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD 596
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN----YGQWAMSATV 272
S V +K L + Y KC + A +F ++ WN Y Q S V
Sbjct: 597 SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEV 649
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCAD 137
VF ++ + T ++I+ + + EA ++ M +G++P+R F SL F + +
Sbjct: 318 VFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG 377
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ ++H + GL + + N L+N+Y C D
Sbjct: 378 LEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGI 437
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D+A+++F M+ + ++P+ V + +L A RT K VH+CV+ESG
Sbjct: 438 YVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGS 497
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++T+L++ Y K + A + +M + WN
Sbjct: 498 PLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWN 533
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 45/224 (20%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + ++ T NS++ Y+ EAF + M +G DR F S+ +C +
Sbjct: 215 RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC--V 272
Query: 139 YVEKQLHSQAIKFGLAS-----DSFLHNTLINMYSSCWCLDQPDEAIKIFYR-------- 185
E H + ++ ++ D F+ LI MY+ C P++A ++F R
Sbjct: 273 NPETLQHGKHVRESISETSFELDLFVGTALITMYARC---RSPEDAAQVFGRMKQTNLIT 329
Query: 186 -----------------------MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
M+ E + PN VT +++L L + R+H +
Sbjct: 330 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLIT 389
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
E G ++ L++ Y +C+ A +F ++ P WN+
Sbjct: 390 EHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNS 433
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
N +I+ YSS EA+ +F+ M +E V PNA+TLV VL + R+LR VH
Sbjct: 27 NVMISAYSS---YKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHAL 83
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQG 276
E GF+ + + T L++ Y KC + A +F +M + WN
Sbjct: 84 SLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWN--------------A 129
Query: 277 LVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVP-----GVLIQVHVPDVL 322
++G +S + G C K A +LF +L+ V VL V PD L
Sbjct: 130 MLGVYS----LQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDAL 176
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 122/271 (45%), Gaps = 45/271 (16%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV 78
N+N + + CL L+ S+++ + QIHAQ+L + L F H+
Sbjct: 11 NSNSKLLSKKNHCLSLLKLSSSVKHVSQIHAQILVSGLQQDTNLLTELIRFCSLSPSKHL 70
Query: 79 RLVFSQISNP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
S + N ++ N ++RGY + + A +H M +G+ P+ F FP + K+CA
Sbjct: 71 SYAHSLLYNSLDSLPPWNFLIRGYASGDAPKNAIRVFHRMRKEGVGPNNFTFPFVLKACA 130
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-- 171
+ KQ+H+ KFGL D +++N L+++Y SC W
Sbjct: 131 TCLALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNS 190
Query: 172 ----CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+ +AI F +M+ +PN T+V +L+ A+ +L + +H V E G
Sbjct: 191 VITACVQNLWLGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERG 250
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +L T L+D Y K + A +F +M
Sbjct: 251 MTLNCQLGTALVDMYAKSGDLGYAKLVFDRM 281
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 115 EMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
+++V GL D + L + C+ + ++ ++ + N LI Y+S D
Sbjct: 42 QILVSGLQQDTNLLTELIRFCSLSPSKHLSYAHSLLYNSLDSLPPWNFLIRGYASG---D 98
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
P AI++F+RM E V PN T VL A A L K+VH + + G V +
Sbjct: 99 APKNAIRVFHRMRKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFKFGLDCDVYVNN 158
Query: 235 TLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
L+ Y CK + A +F V+ + WN+
Sbjct: 159 NLVHLYGSCKRIWDACKVFDEMPVRSIVSWNS 190
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 48/276 (17%)
Query: 47 LEKCSTMRELKQIHA----------QMLRTSLFFDPCAD---YHVRLVFSQISNPTIYTC 93
L+ ++ L Q+HA + L T L CA + R +F + NP +
Sbjct: 19 LQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLF 78
Query: 94 NSIVRGYTN-KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAI 149
S++R + N + FY M++ + P + F S+ KSCAD+ + +H +
Sbjct: 79 TSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVL 138
Query: 150 KFGLASDSFLHNTLINMYSSCWCL-------DQ---------------------PDEAIK 181
G SD ++ L++ Y C L D+ EAI+
Sbjct: 139 VNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIR 198
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F RM+ V+PN+ T V+VL+A A VH+ +G +V L T+L++ Y
Sbjct: 199 LFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYT 258
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
+C VS+A ++F M N W AM + G G
Sbjct: 259 RCGNVSKAREVFDSM--KERNVVAWTAMISGYGTNG 292
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLAS 155
GY+ EA L Y EM+ + P F F + K+CAD ++V + +H+Q +K
Sbjct: 4 GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63
Query: 156 DSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRME 187
D ++N L+ +Y+ C C D+ EA+ +F RM+
Sbjct: 64 DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
E + + VTL +L AR L + K +H + +S V + +L+D Y KC V
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVD 183
Query: 248 RAWDLFVKM----LFPWN 261
LF M L WN
Sbjct: 184 YGRRLFDGMRSKDLTSWN 201
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTS------------LFFDPCADYHVRL-VFSQISNPT 89
+L+ C+ +REL + +HAQ++++S + C ++ L VF Q+
Sbjct: 36 ALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERN 95
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ + NS++ G+ ++ EA + M +G+ ++ CA + K++H+
Sbjct: 96 VASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHA 155
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD 174
Q +K D + N+L++MY C +D
Sbjct: 156 QIVKSARRPDVLVLNSLVDMYVKCGVVD 183
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 44/249 (17%)
Query: 59 IHAQMLRTSL----------FFDPCA-DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
IHA +L++ L F+ C R VF + +P + +S+V Y+N L
Sbjct: 26 IHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPR 85
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMY 167
EA + M +G+ + F P + K D + Q+H+ A+ GL+ D F+ N L+ MY
Sbjct: 86 EALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMY 145
Query: 168 SSCWCLDQP-----------------------------DEAIKIFYRMEIENVKPNAVTL 198
+D+ +A+++F M V+PN
Sbjct: 146 GGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGF 205
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
V+ A +RDL ++VH V +G+ V L+D Y K + A +F K+
Sbjct: 206 SCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPK 265
Query: 257 --LFPWNNY 263
+ WN +
Sbjct: 266 TDVVSWNAF 274
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + S+ I S++ + + +A + EM+ +GL PD F+ SL +CA +
Sbjct: 463 VFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSA 522
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
KQ+H+ IK +D F N L+ Y+ C ++ D
Sbjct: 523 YEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGG 582
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
A+ +F RM E + PN +TL +VL A
Sbjct: 583 LAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCA 617
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 51/260 (19%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHVR-LVFSQIS 86
C+V+ C+ R+L +++HA ++RT + D H+ LVF ++
Sbjct: 207 CVVN--ACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP 264
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE----- 141
+ + N+ + G A +M GL+P+ F S+ K+CA
Sbjct: 265 KTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALG 324
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+Q+H IK SD ++ L++MY+ LD
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
E++ +F RM E N TL VL + A + +VH ++ GF S +
Sbjct: 385 GCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV 444
Query: 234 TTLMDAYCKCKFVSRAWDLF 253
L+D+Y KC + A +F
Sbjct: 445 NGLIDSYWKCNCLRYANKVF 464
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 48/255 (18%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCN 94
N+ A L C+ + EL QIHA +LRT++ + +P+ + N
Sbjct: 184 NNMDHARIVATLLMNCTNVLELYQIHAHVLRTNMLEN---------------HPSSFYWN 228
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKF 151
I+R YT + A Y +M+ G++PD + P +FK+ + Y + QLHS AI+
Sbjct: 229 IIIRSYTRLEVPRIALFVYIDMLRAGILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRL 288
Query: 152 GLASDSFLHNTLINMYS-------SCWCLDQ---------------------PDEAIKIF 183
G D + + LI++YS +C +Q EA+ +F
Sbjct: 289 GFEFDQYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMF 348
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW--SHVELKTTLMDAYC 241
++ ++P+ T+V+V +A +L ++HK V + S++ + +L+D Y
Sbjct: 349 IKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYG 408
Query: 242 KCKFVSRAWDLFVKM 256
KC + A +F M
Sbjct: 409 KCGRMDLAMKVFSNM 423
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N++ +GYT +AF Y M + G+ PD + ++CA D ++ Q IK
Sbjct: 471 NALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIK 530
Query: 151 FGLASDSFLHNTLINMYSSCWCL-----------------------------DQPDEAIK 181
G S+ + + LI+M++ C L Q +EAI
Sbjct: 531 HGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIA 590
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F +M++E +PNAVT VN++ A A L VH + + GF SH + +L+D Y
Sbjct: 591 TFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVGNSLVDMYA 650
Query: 242 KCKFVSRAWDLFVKM----LFPWNN 262
KC + + F+++ + WN
Sbjct: 651 KCGMIESSKKCFIEIRNKNMVSWNT 675
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 49/241 (20%)
Query: 47 LEKCSTMRELKQIHAQMLRT------------SLFFDPCADYHVRLVFSQISNPTIYTCN 94
L +C R L QIH ++ SLF P D ++V S + P + N
Sbjct: 12 LRECKNFRLLLQIHGSLIVAGLKPHNQLINAYSLFQRP--DLSRKIVDS-VPYPGVVLWN 68
Query: 95 SIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++RGYT LH EA +F + +G+ PD++ F K+CA D ++H +
Sbjct: 69 SMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSMDFEEGLRIHDLIAE 128
Query: 151 FGLASDSFLHNTLINMY-------SSCWCLDQ---------------------PDEAIKI 182
G SD ++ L+ MY S+ D+ EA+++
Sbjct: 129 MGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRL 188
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M V + V+L N++ A ++ + +H V + GF S + L+D YCK
Sbjct: 189 FRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKGFTS--AFSSGLIDMYCK 246
Query: 243 C 243
C
Sbjct: 247 C 247
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 37/230 (16%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C + + +F +I + + + ++++ + H EA + +M+ P+
Sbjct: 344 MYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVT 403
Query: 128 FPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWC------------ 172
S+ + CA + K +H AIK + S+ +I+MY+ C
Sbjct: 404 LTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLP 463
Query: 173 ----------------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+ +A ++ M++ V P++ T+V +L A D
Sbjct: 464 IKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSC 523
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-----WN 261
V+ + + GF S + L+D + KC ++ A LF K F WN
Sbjct: 524 VYGQIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWN 573
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 28/141 (19%)
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+H ++ G+ SD + +LINMYS C L+ Q
Sbjct: 322 IHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQ 381
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+ +F M + KPNAVTL +VL A R K +H ++ S +E T
Sbjct: 382 HDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATA 441
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
++ Y KC S F ++
Sbjct: 442 VISMYAKCGLFSPTLKAFERL 462
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 43/168 (25%)
Query: 131 LFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------- 177
+ + C + + Q+H I GL HN LIN YS +PD
Sbjct: 11 MLRECKNFRLLLQIHGSLIVAGLKP----HNQLINAYS---LFQRPDLSRKIVDSVPYPG 63
Query: 178 ------------------EAIKIF-YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
EA+++F Y E + + P+ T L A A + D R+H
Sbjct: 64 VVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSMDFEEGLRIH 123
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ E GF S V + T L++ YCK + A +F KM + WN
Sbjct: 124 DLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNT 171
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 33/209 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ I T N++V G EA + +M + D +L + + +
Sbjct: 155 RQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKL 214
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------DQP------ 176
V + LH IK G S + LI+MY C L D+
Sbjct: 215 EKNDVCRCLHGLVIKKGFTSA--FSSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMM 272
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+E +++F M +V+ N V + L A A +L +H+ + G
Sbjct: 273 AAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQGMM 332
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S + + T+L++ Y KC + A LF+K+
Sbjct: 333 SDISVATSLINMYSKCGELELAEQLFIKI 361
>gi|297733980|emb|CBI15227.3| unnamed protein product [Vitis vinifera]
Length = 491
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 50/265 (18%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------------CADYHVRLVFSQ 84
H C L C +++ LKQ+HA + +T L DP DY RL F
Sbjct: 6 HLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRL-FLH 64
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCAD---IYV 140
NP ++ N+++RG + + + + EM + P D F F L K+ A +
Sbjct: 65 FPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLES 124
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CLD 174
QLH QAI GL + F+ TL++MYS C W C
Sbjct: 125 GIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184
Query: 175 QPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVE 231
D EAI++F+ ME ++P+ + +++L A + A + + + +K D +E
Sbjct: 185 CGDVKEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIE 244
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM 256
++D Y + + +A++ + M
Sbjct: 245 HYGCMVDLYGRAGQLDKAYEFIIHM 269
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L +QIHA++L+ +F+ C V +L+FS++
Sbjct: 72 LQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRAR 131
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+++ +I+ L A + + EM+ GL PD F+ P++ K+C + + +H
Sbjct: 132 NVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVH 191
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD-------------------- 177
K GL F+ ++L +MY C LD PD
Sbjct: 192 GYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNGMNQ 251
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++ M E ++P VT+ L+A A + K+ H +G L T+++
Sbjct: 252 EAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSIL 311
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ YCK + A +F +M+ WN
Sbjct: 312 NFYCKVGLIEYAEMIFDRMIEKDVVTWN 339
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 37/249 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF +I + T+ N+++ GY ++ EA M +G+ P R + + A+
Sbjct: 223 RKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANM 282
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
I KQ H+ AI GL D+ L +++N Y ++ +
Sbjct: 283 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLI 342
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+AI + M N+ + VTL ++++A AR +L+ K V GF
Sbjct: 343 SGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFV 402
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
S + L +T ++ Y KC + A +F K L WN A A G G R
Sbjct: 403 SDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTL--LAAYAEPGLSGEALRLFY 460
Query: 284 AHQISGPCP 292
Q+ G P
Sbjct: 461 EMQLEGVPP 469
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
CL + + E KQ HA + L D + ++F ++
Sbjct: 275 CLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKD 334
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ T N ++ GY + L +A M L D SL + A ++ + K++
Sbjct: 335 VVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQC 394
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL-------------------------DQPD---E 178
I+ G SD L +T + MY+ C + +P E
Sbjct: 395 YCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGE 454
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E V PN +T +V+ + R + K + + SG ++ TT+M+
Sbjct: 455 ALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMN 514
Query: 239 A 239
Sbjct: 515 G 515
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 7/182 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF+ + N+++ Y L EA ++EM ++G+ P+ + S+ S
Sbjct: 427 VFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQ 486
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ K + Q G++ + T++N C +EAI +M+ ++ N +
Sbjct: 487 VNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGC---SEEAIVYLRKMQESGLRLNVFS 543
Query: 198 LVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+A A L + +H + S V ++T+L+D Y KC +S+A +F
Sbjct: 544 ITVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSK 603
Query: 257 LF 258
L+
Sbjct: 604 LY 605
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 37/196 (18%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYVEK---QLHSQAI 149
N+++RGY+ + EA + Y MI +G+ P + F FP L SCA + + ++HS I
Sbjct: 3 NTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHII 62
Query: 150 KFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIK 181
K G SD F+ N LI++YS L+ QP+ A+
Sbjct: 63 KHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALC 122
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGFWSHVELKTTLMDAY 240
+F M+ + VTLV VL+A AR KR+ H+ ++ F + L +MD Y
Sbjct: 123 LFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMY 178
Query: 241 CKCKFVSRAWDLFVKM 256
KC + A ++F ++
Sbjct: 179 AKCGSIDSALEIFRRV 194
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 36/221 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ + + NS++ GY++ + EA YHE+ ++PD F S+ + A
Sbjct: 159 RARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFA 218
Query: 137 DIYVEKQ---LHSQAIKFGLASDSFLHNTLINM------------------------YSS 169
++ V KQ LH +K G+ S S ++N L+ M Y++
Sbjct: 219 NLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNT 278
Query: 170 CWC----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C L+ +E++K+F ++ KP+ +T+ +VL A RDL K ++ + +G
Sbjct: 279 MICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAG 337
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
F +K L+D Y KC + A D+F M WN+
Sbjct: 338 FVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 119/271 (43%), Gaps = 49/271 (18%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRL------------- 80
+ ++ + F +L S + EL++IHA L SL D + +L
Sbjct: 1 MQTRVSSAFISRALSSSSNLNELRRIHA--LVISLGLDGSDFFSGKLIDKYSHFRAPASS 58
Query: 81 --VFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
VF ++S +Y NSI+R ++ +A FY ++ + PD++ FPS+ K+CA
Sbjct: 59 LSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAG 118
Query: 138 IYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
++ + ++ Q ++ G SD ++ N L++MYS L +
Sbjct: 119 LFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSL 178
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA++I++ + + P++ T+ +VL A A ++ + +H +SG
Sbjct: 179 ISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGV 238
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
S + L+ Y K + A +F +M+
Sbjct: 239 NSVSVVNNGLLAMYLKFSRPTDARRVFDEMV 269
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 47/254 (18%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFSQISNPTIYTC 93
C +R+L K I+ MLR + C D R VF+ + +
Sbjct: 317 CGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSW 376
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR---FMFPSLFKSCADIYVEKQLHSQAIK 150
NSI+ GY EA + M++ D M SL AD+ K LHS IK
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIK 436
Query: 151 FGLASDSFLHNTLINMYSSC--------------------W------CLDQPDEA--IKI 182
G+ D + N LI+MY+ C W C+ D A +++
Sbjct: 437 SGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQV 496
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+M V P+ T + L A R K +H C+ G+ S +++ L++ Y K
Sbjct: 497 TTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556
Query: 243 CKFVSRAWDLFVKM 256
C + ++ +F +M
Sbjct: 557 CGCLESSFRVFERM 570
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 43/239 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++ T N+++ GY + E+ + E + Q PD S+ +C
Sbjct: 262 RRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHL 320
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQPD----- 177
D+ + K +++ ++ G +S + N LI++Y+ C C D
Sbjct: 321 RDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSII 380
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+K+F M I + + +T + +++ R DL+ K +H +SG +
Sbjct: 381 SGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIY 440
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN-------YGQWAMSATVGPQ 275
+ + L+D Y KC V + +F M WN +G +A V Q
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQ 499
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 20/168 (11%)
Query: 41 HFCLVSLE-KCSTMRELKQIHAQMLRTSLFFD------------PCADYHVRL-VFSQIS 86
+ L+SL + + ++ K +H+ +++ ++ D C + L +F+ +
Sbjct: 411 YLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG 470
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQ 143
T N+++ +M ++PD F CA + + K+
Sbjct: 471 TLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKE 530
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+H ++FG S+ + N LI MYS C CL+ + ++F RM +V
Sbjct: 531 IHCCLLRFGYESELQIGNALIEMYSKCGCLES---SFRVFERMSRRDV 575
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 154 ASDSFLHNTLINMYS-SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
A + ++ N++I +S + W +A++ + ++ V P+ T +V+ A A D
Sbjct: 68 AKNVYIWNSIIRAFSKNGWF----PKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAE 123
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V+K + E GF S + + L+D Y + +SRA +F +M L WN+
Sbjct: 124 MGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNS 177
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 39/213 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCA- 136
RLVF + + N++V GYT L+ + + +++ PD F FPS+ K+C
Sbjct: 99 RLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGG 158
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF----------- 183
D+ + + +H IK GL D F+ N L+ MY C + DEA+K+F
Sbjct: 159 ILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV---DEAMKVFDFMPETNLVSW 215
Query: 184 ------------------YRMEI---ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
ME+ E + P+ VT+V +L A ++ +H
Sbjct: 216 NSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV 275
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+ G V + ++ Y KC +++ A FVK
Sbjct: 276 KLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVK 308
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 58/258 (22%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCA--- 136
VF + + + NS++ ++ ++F EM+ + GL+PD ++ CA
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
++ + +H A+K GL+ + ++N ++ MYS C L++
Sbjct: 263 EVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMIS 322
Query: 177 --------DEAIKIFYRMEI--ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA + M+I E +K N VT++NVL A LR++K +H F
Sbjct: 323 AFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF 382
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRHS 282
HVEL + AY KC ++ A +F K + WN L+G H+
Sbjct: 383 -QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWN--------------ALIGGHA 427
Query: 283 TAHQISGPCPKKAHKLFF 300
P+KA L F
Sbjct: 428 QNGD-----PRKALHLLF 440
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTC 93
C+ ++ L K+IH +LR L D C R++F ++ + + +
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSW 520
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+++ GY+ L +E+ + + + +G+ S+F +C+ + + K+ H +K
Sbjct: 521 NAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK 580
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP-NAVTL 198
D+F+ ++I+MY+ C+ E+ K+F ++ +NV NA+ +
Sbjct: 581 ALQTEDAFVGCSIIDMYAKSGCI---KESRKVFDGLKDKNVASWNAIIV 626
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTI 90
L+ C +M ELK+IHA + + D DY +L+ + + NPT
Sbjct: 20 LDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILN-VPNPTT 78
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ N+++R ++N + + + +M+ G+ PD +P L K+ + + ++ +H
Sbjct: 79 FNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVH 138
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+K G D F+ N+LI+MY+SC A K+F M + N VT +L A+
Sbjct: 139 IVKSGHEIDKFIQNSLIHMYASC---RDIASARKVFDEMP----RKNLVTWNAMLDGYAK 191
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
DL + V + E S ++L+D Y K + A LF +M F
Sbjct: 192 CGDLNMAREVFNLMPEKDVVSW----SSLIDGYVKGRVYGEAMALFERMSF 238
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/249 (18%), Positives = 96/249 (38%), Gaps = 42/249 (16%)
Query: 50 CSTMRELKQIHAQMLRTSLF--------FDPCADYHV-RLVFSQISNPTIYTCNSIVRGY 100
C + +++ +M R +L + C D ++ R VF+ + + + +S++ GY
Sbjct: 161 CRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGY 220
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS 157
++ EA + M G + + S +CA + + +H ++ L
Sbjct: 221 VKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTI 280
Query: 158 FLHNTLINMYSSCWC------------LDQPD------------------EAIKIFYRME 187
L +L++MY+ C L + D EA+ +F M+
Sbjct: 281 VLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMK 340
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+ + P+ +T + +L+ A + C+ + G VE ++DA + VS
Sbjct: 341 MVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEHYACMVDALSRAGQVS 400
Query: 248 RAWDLFVKM 256
A+ +M
Sbjct: 401 EAYQFLCQM 409
>gi|302756145|ref|XP_002961496.1| hypothetical protein SELMODRAFT_61782 [Selaginella moellendorffii]
gi|300170155|gb|EFJ36756.1| hypothetical protein SELMODRAFT_61782 [Selaginella moellendorffii]
Length = 570
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 54/268 (20%)
Query: 47 LEKCSTMR---ELKQIHAQMLRTSLF---FDP------------CADY-HVRLVFSQISN 87
L+ CS +R E +++ ++ S F DP C + R VF
Sbjct: 89 LKACSELRYLEEGREVENLLVSGSCFPSSLDPAVLTSLLNLYASCGSLENARRVFESFHE 148
Query: 88 PTIYTCNSIVRGYTN-KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ--- 143
+ NS++ Y + + F+ +M+++G+ + F + +C+ + +Q
Sbjct: 149 KDLVCWNSMLAAYAKHEKTGRQTLEFFQKMLLEGVAANVVSFTCVVGACSRPELSEQGTV 208
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC------WCLDQP--------------------- 176
+H Q GL +DSFL L+NMYS C W L Q
Sbjct: 209 VHEQITCSGLVADSFLAAALVNMYSKCGRLGSAWELFQRVDVKMSLVSWNSILAAHAQRA 268
Query: 177 --DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELK 233
+ ++IF +++E +KP+ VTL++VL A + LR V+ +++ V + G SH + L
Sbjct: 269 DLTKVLEIFGMLQLEGLKPSGVTLISVLGACCSTQALRIVEHIYERVAQVGELSHDLFLG 328
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
T LM ++C C ++ A LF + L WN
Sbjct: 329 TALMTSFCDCGKLADAESLFYR-LNRWN 355
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 40/222 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
VF +I + +++ ++ T L + M+++G+ PDR + + K+C+++ Y
Sbjct: 38 VFQRIKDRNVFSWTILMDACTENGLSELTLELFRRMLLEGIRPDRVAYLGVLKACSELRY 97
Query: 140 VEKQLHSQAIK-----FGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+E+ + + F + D + +L+N+Y+SC L+
Sbjct: 98 LEEGREVENLLVSGSCFPSSLDPAVLTSLLNLYASCGSLENARRVFESFHEKDLVCWNSM 157
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ ++ F +M +E V N V+ V+ A +R VH+ + SG
Sbjct: 158 LAAYAKHEKTGRQTLEFFQKMLLEGVAANVVSFTCVVGACSRPELSEQGTVVHEQITCSG 217
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF----VKM-LFPWNN 262
+ L L++ Y KC + AW+LF VKM L WN+
Sbjct: 218 LVADSFLAAALVNMYSKCGRLGSAWELFQRVDVKMSLVSWNS 259
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ--A 148
N+++ GY +A +EM ++G+ P+ F + +C+ + V K +H + A
Sbjct: 360 NTMIAGYVQHGFDLQALHLLYEMDLEGIKPNVVTFLGIVDACSSLAVLGNAKAVHERISA 419
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAV 196
K GL D+ L +++MY++C D +++ ++F +++ + V NAV
Sbjct: 420 SKVGL--DTVLGTAIVSMYANC---DSLEDSRRVFESLDLRDTVSWNAV 463
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 41/224 (18%)
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
++ + NSI+ + + + + + ++GL P S+ +C + + + ++
Sbjct: 253 SLVSWNSILAAHAQRADLTKVLEIFGMLQLEGLKPSGVTLISVLGACCSTQALRIVEHIY 312
Query: 146 SQAIKFG-LASDSFLHNTLINMYSSCWCLDQPD--------------------------- 177
+ + G L+ D FL L+ + C L +
Sbjct: 313 ERVAQVGELSHDLFLGTALMTSFCDCGKLADAESLFYRLNRWNAASWNTMIAGYVQHGFD 372
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A+ + Y M++E +KPN VT + ++ A + L K VH+ + S L T +
Sbjct: 373 LQALHLLYEMDLEGIKPNVVTFLGIVDACSSLAVLGNAKAVHERISASKVGLDTVLGTAI 432
Query: 237 MDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQG 276
+ Y C + + +F ++ WN A+ A QG
Sbjct: 433 VSMYANCDSLEDSRRVFESLDLRDTVSWN-----AVIAAYAEQG 471
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 35/202 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
NSI+ Y+ + EA + EM+ G++ + + F + ++C D I + Q+H+ +K
Sbjct: 129 NSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILK 188
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G D ++ N L+ MY + + EA++
Sbjct: 189 SGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEF 248
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
FY ++ ++KP+ V++++++ A R L K +H ++GF S++ + TL+D Y K
Sbjct: 249 FYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK 308
Query: 243 C---KFVSRAWDLFV-KMLFPW 260
C + RA+DL K L W
Sbjct: 309 CCCMSYGGRAFDLMAHKDLISW 330
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 113/264 (42%), Gaps = 45/264 (17%)
Query: 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD-----PCADYHVR--------L 80
+ + Y L + E S ++ QIHA +L++ D +VR +
Sbjct: 157 VTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAV 216
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
+F + I T NS++ G+ L+ EA F++++ L PD+ S+ + + Y
Sbjct: 217 IFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGY 276
Query: 140 V--EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ K++H+ AIK G S+ + NTLI+MY+ C C+
Sbjct: 277 LLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+A+++ ++++E + +A + ++L A L +K +H G
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDP 396
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
V L+ T++D Y +C + A +F
Sbjct: 397 V-LQNTIIDVYGECGIIDYAVRIF 419
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C Y R F +++ + + + GY + +A ++ ++G+ D M S+
Sbjct: 311 CMSYGGR-AFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSIL 369
Query: 133 KSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------- 176
+C + K++H I+ GL SD L NT+I++Y C +D
Sbjct: 370 LACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVV 428
Query: 177 ---------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
++A+++F M+ ++P+ VTLV++L+A L+ K +H +
Sbjct: 429 SWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFI 488
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
GF + TL+D Y +C V A+ +F
Sbjct: 489 IRKGFILEGSISNTLVDMYARCGSVEDAYKIF 520
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
++F ++S +I+T N+++ GY + A Y EM G+ D + FP L K+C
Sbjct: 12 EMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIV 71
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
D++ ++H AIK+G S F+ N+L+ +Y+ C + + A K+F RM + N
Sbjct: 72 EDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKC---NDINGARKLFDRMYVRN 123
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 20/147 (13%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQIS 86
CLV LEKC + LKQ HAQ+ T L + A Y R VF +I
Sbjct: 8 CLVLLEKCKNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACR-VFERIH 66
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
+PT+ CN+I++ + + F + +M+ GL PD + P + K+CA D + K
Sbjct: 67 HPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKM 126
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC 170
+H + K GL D F+ N+L+ MYS C
Sbjct: 127 VHGYSSKLGLVFDIFVGNSLMAMYSVC 153
>gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Cucumis sativus]
Length = 575
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 23/183 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD---------PCADY----HVRLVFSQISNPTIYTC 93
L+ C ++REL Q H ++ + LF D +++ + L+F I P +
Sbjct: 56 LQSCQSVRELFQFHGHLITSGLFNDHFWANRVLLQASEFGDIVYTVLIFRHIKVPNTFCV 115
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
N +++ Y+ + EA Y E + GL PD + F SLF +CA ++ H QA K
Sbjct: 116 NRVIKAYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFK 175
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G+ S L N+LI+MY C + K+F M +++ V+ +++TA AR D
Sbjct: 176 NGVDSVMVLGNSLIHMYGCC---KHIELGRKVFDEMSTQDL----VSWNSIVTAYARVGD 228
Query: 211 LRT 213
L T
Sbjct: 229 LYT 231
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R +F + + + +++ GY + + EA + M G PD F S+ SC
Sbjct: 276 RKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSL 335
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
A I+ +Q+H+ IK L +D ++ N LI+MY+ C L +
Sbjct: 336 AAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMI 395
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+ IF RM +++P+ +T V++L + + K++H + +SG
Sbjct: 396 EGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTS 455
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ + L+D Y KC V+ A +F K + WN+
Sbjct: 456 LDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNS 494
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 47/258 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQIS 86
C L C ++ + +QIHA +++ L D R VF ++
Sbjct: 325 CTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALA 384
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
+ N+++ GY+ EA + M L P F SL + I + KQ
Sbjct: 385 EDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQ 444
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQ 175
+H IK G + D + + LI++YS C + +Q
Sbjct: 445 IHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQ 504
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EAIK+F ++ + + PN T V ++T + + ++ H + ++G + +
Sbjct: 505 GEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNA 564
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D Y KC F+ LF
Sbjct: 565 LIDMYAKCGFIKEGRMLF 582
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + + + S++ YT A LF +P+ F+ S+ ++C
Sbjct: 73 RHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQ 132
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + +Q+H A+K L ++ ++ LIN+Y+ C+D+
Sbjct: 133 SKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTV 192
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
A+++F RM IE V+P+ L + ++A + L +++H S
Sbjct: 193 ITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSAT 252
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + L+D YCKC +S A LF
Sbjct: 253 ETDTSVINVLIDLYCKCSRLSAARKLF 279
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 44/196 (22%)
Query: 57 KQIHAQMLRTSLFFDPCADYHVRLVFSQIS----NPTIYTC---------NSIVRGYTNK 103
KQIH ++++ D A + V+S+ S T++ NS++ G+
Sbjct: 443 KQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQN 502
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCADIYVEKQLHSQAIKFGLASDSFLH 160
EA ++++++ G+ P+ F F +L + A ++ +Q H+ IK G+ +D +
Sbjct: 503 EQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVS 562
Query: 161 NTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENVK 192
N LI+MY+ C + + +EA+++F M V+
Sbjct: 563 NALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVE 622
Query: 193 PNAVTLVNVLTARARA 208
PN VT V VL+A A A
Sbjct: 623 PNYVTFVGVLSACAHA 638
>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Vitis vinifera]
Length = 751
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF ++ + I NS++ Y EA Y M+ G++PD F F S+FK+ +
Sbjct: 128 YARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFS 187
Query: 137 D---IYVEKQLHSQAIKFGLA-SDSFLHNTLINMYSSCWCL------------------- 173
D ++ ++ H Q++ G+ S+ F+ + L++MY+ +
Sbjct: 188 DLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFT 247
Query: 174 ---------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ E++++F M + ++ N TL +VL DL + + +H + ++
Sbjct: 248 ALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKA 307
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
G S V +T+L+ Y +C V + +F + + P
Sbjct: 308 GLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINP 342
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF Q NP T S++ G A L + +M+ + P+ F S+ ++C+ + +
Sbjct: 335 VFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAM 394
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD---------- 177
KQ+H+ +KFGL D ++ LI+ Y C + + D
Sbjct: 395 LEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYS 454
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F M+ ++PN VT + VL+A
Sbjct: 455 YAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSA 489
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 31/210 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
RLV Q+ + +++ GY++ E+ + M +G+ + + S+ C
Sbjct: 232 RLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNL 291
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY----------- 184
D+ + +H +K GL S +L+ MY C +D + K F
Sbjct: 292 EDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVI 351
Query: 185 -------RMEI----------ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
R EI ++ PN+ TL +VL A + L K++H V + G
Sbjct: 352 VGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLD 411
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ L+D Y KC A +F +L
Sbjct: 412 IDKYVGAALIDFYGKCGSTEIARSVFNGLL 441
>gi|302761950|ref|XP_002964397.1| hypothetical protein SELMODRAFT_82011 [Selaginella moellendorffii]
gi|300168126|gb|EFJ34730.1| hypothetical protein SELMODRAFT_82011 [Selaginella moellendorffii]
Length = 376
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 37/217 (17%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+VF I++ ++ S++R Y A Y E +V+G PD F ++ ++C +
Sbjct: 1 MVFGSIASKDDFSWTSMIRAYVEHEEFDLALEIYMEFLVEGGKPDASTFKNILRACTGLE 60
Query: 140 VEKQL------HSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------ 177
EK L HSQ ++ GL S+ L N L+ +Y S C ++ P+
Sbjct: 61 -EKSLPQGRLVHSQILESGLGSNLALVNRLVYLYGSSGCFEEAMDLLDRMNPPEDVPWNA 119
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+++F R +E VKP+ VT V+ + A + D + + +H E+G
Sbjct: 120 MVAALSQRGKNRQALELFNRTSLEGVKPSGVTFVSGIDACSDGGDEQQGRAIHARALEAG 179
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
F S + L++ Y KC + +A + WNN
Sbjct: 180 FGSDEVVTGCLINMYGKCGNLEQARRMLEAS--GWNN 214
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 39/204 (19%)
Query: 91 YTCNSIVRGYTNKNLHH---EAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVEKQ 143
+ N+++R + +H A F+ M+ ++P++F FP L K+CA + V Q
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQ 148
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQ-PDE-------------- 178
H+ A+KFG A+D ++ NTLI+MY SC+ D+ P E
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVR 207
Query: 179 ------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
A+++F M+ V+ + VT++ VL A L + V + V+ G V L
Sbjct: 208 GGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+D KC V A +F M
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGM 291
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTI 90
L+ C +M ELK+IHA + + D DY +L+ + + NPT
Sbjct: 20 LDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILN-VPNPTT 78
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ N+++R ++N + + + +M+ G+ PD +P L K+ + + ++ +H
Sbjct: 79 FNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVH 138
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+K G D F+ N+LI+MY+SC A K+F M + N VT +L A+
Sbjct: 139 IVKSGHEIDKFIQNSLIHMYASC---RDIASARKVFDEMP----RKNLVTWNAMLDGYAK 191
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
DL + V + E S ++L+D Y K + A LF +M F
Sbjct: 192 CGDLNMAREVFNLMPEKDVVSW----SSLIDGYVKGRVYGEAMALFERMSF 238
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/249 (18%), Positives = 96/249 (38%), Gaps = 42/249 (16%)
Query: 50 CSTMRELKQIHAQMLRTSLF--------FDPCADYHV-RLVFSQISNPTIYTCNSIVRGY 100
C + +++ +M R +L + C D ++ R VF+ + + + +S++ GY
Sbjct: 161 CRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGY 220
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS 157
++ EA + M G + + S +CA + + +H ++ L
Sbjct: 221 VKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTI 280
Query: 158 FLHNTLINMYSSCWC------------LDQPD------------------EAIKIFYRME 187
L +L++MY+ C L + D EA+ +F M+
Sbjct: 281 VLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMK 340
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+ + P+ +T + +L+ A + C+ + G VE ++DA + VS
Sbjct: 341 MVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEHYACMVDALSRAGQVS 400
Query: 248 RAWDLFVKM 256
A+ +M
Sbjct: 401 EAYQFLCQM 409
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 87/301 (28%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFF----------------DPCADYHVRLVFSQISNPTIY 91
E C TM+ LK IHA R +L + C Y RL FSQI P +
Sbjct: 3 EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRL-FSQIHQPNTF 61
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-------KQL 144
N+++RGY+ + ++ +++M + PD F F L K + + ++ ++
Sbjct: 62 FYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEI 121
Query: 145 HSQAIKFGLASDSFLHNTLINMYSS--------------------CWC--------LDQP 176
H +K G F+ N LI++Y++ W +
Sbjct: 122 HGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGEL 181
Query: 177 DEAIKIFYRM-----------------------------EIEN--VKPNAVTLVNVLTAR 205
+ A ++FY M E+ + V+P+ V +V+V++A
Sbjct: 182 ELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISAC 241
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
DL T VH+ +DE+GF V L L+D Y KC + AW +F M L WN
Sbjct: 242 TSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWN 301
Query: 262 N 262
+
Sbjct: 302 S 302
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 32/216 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF ++ + + +V GY EA + EM G+ PD S+ +C
Sbjct: 185 RQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSL 244
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
D+ ++H + G L N LI+MY+ C C+D
Sbjct: 245 GDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMI 304
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGF 226
++A ++F M ++P+ VT + +LTA + + + + + G
Sbjct: 305 SACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGV 364
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+ VE ++D + + A+ L M P N+
Sbjct: 365 EAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND 400
>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 49/275 (17%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVF 82
S + CL + Q+H +L+T L + C D RLVF
Sbjct: 169 SAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVF 228
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
+ N + T S+V GY+ EA EM++Q L P+ + SL S + +
Sbjct: 229 DHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLS 288
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WC------ 172
Q+H I+ GL S+ ++ TL+ +YS C W
Sbjct: 289 YCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGY 348
Query: 173 --LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
L + +EA++ F+ M+ + ++ TL +V+ A + L K +H + +G+ SH+
Sbjct: 349 SKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHL 408
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++ L+ Y +C + + +F M + WN
Sbjct: 409 NVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWN 443
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 34/237 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R++F Q+ T+ T NS++ GY N A + +M+ + F S C+ +
Sbjct: 124 RVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQL 183
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC--- 172
V Q+H +K GL + + +L++MYS C W
Sbjct: 184 EAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMV 243
Query: 173 -----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+++PDEA+ + M +++++PN VT ++L++ + L +VH C+ + G
Sbjct: 244 TGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGLE 303
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
S+V + TL+ Y KC S + + F K+ A +A + +GRH A
Sbjct: 304 SNVYIAATLVTVYSKC---SSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEA 357
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+++ GY+ H EA +HEM G+ D + S+ + + + K +H+ +
Sbjct: 342 NAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHR 401
Query: 151 FGLASDSFLHNTLINMYSSC----------WCLDQPD------------------EAIKI 182
G S + N L++MY+ C W +++ D EA+++
Sbjct: 402 TGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVEL 461
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F +M +KPN+ T + VL A
Sbjct: 462 FEQMRKTEIKPNSSTFLAVLCA 483
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF+ + + NS++ G + + +A + +M + L PD SL +C+ +
Sbjct: 328 VFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGA 387
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------ 171
V KQ HS AIK G++SD L L+++Y C W
Sbjct: 388 LLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVA 447
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
LD +E+ KIF +M++E ++PN T ++L + R + +++H V ++GF +
Sbjct: 448 YGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFN 507
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + + L+D Y K + A +F ++
Sbjct: 508 VYVSSVLIDMYAKLGKLDHALKIFRRL 534
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDP-----CADYHVRL--------VFSQISNPTI 90
L CS++R + +QIH Q+L+T F+ D + +L +F ++ +
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GY EA + EM QG+ D F S +CA I +Q+H+Q
Sbjct: 540 VSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQ 599
Query: 148 AIKFGLASDSFLHNTLINMYSSC-------WCLDQP---------------------DEA 179
A G + D + N L+++Y+ C + D+ +EA
Sbjct: 600 ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEA 659
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F +M + N+ T ++A A +++ K++H + ++G S E+ L+
Sbjct: 660 LSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITL 719
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC + A F +M P N W
Sbjct: 720 YAKCGNIDDAERQFFEM--PEKNEISW 744
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 56 LKQIHAQML----RTSLFF-DPCADYH--------VRLVFSQISNPTIYTCNSIVRGYTN 102
+++IHA+ + SLF +P D + + VF + + +++ G +
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQ 248
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFL 159
EA L + +M G+ P ++F S+ +C + V +QLH +K G + ++++
Sbjct: 249 SGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYV 308
Query: 160 HNTLINMYSSCW-------------------------CLDQ---PDEAIKIFYRMEIENV 191
N L+ +YS L Q D+A+++F +M ++ +
Sbjct: 309 CNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCL 368
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
KP+ VT+ ++L+A + L K+ H ++G S + L+ L+D Y KC + A +
Sbjct: 369 KPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHE 428
Query: 252 LFV 254
F+
Sbjct: 429 FFL 431
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 108/255 (42%), Gaps = 69/255 (27%)
Query: 85 ISNPTI--YTCNSIVRGYTNKNLHHEAF----LFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+S+P I + N+++R T + + AF Y M + ++PD FP L +S
Sbjct: 17 LSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTP 76
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPDE---------- 178
+ +QLH+Q + GLA+D F+ +LINMYSSC + QPD
Sbjct: 77 HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136
Query: 179 --------AIKIFYRMEIENV----------------------------------KPNAV 196
A K+F +M +NV +PN
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T+ +VL+A AR L+ K VH +D++G V L T+L+D Y KC + RA +F
Sbjct: 197 TMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIF-DN 255
Query: 257 LFPWNNYGQWAMSAT 271
L P + W+ T
Sbjct: 256 LGPEKDVMAWSAMIT 270
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 82/293 (27%)
Query: 53 MRELKQIHAQMLRTSL--------------FFDPCAD---YHVRLVFSQISNPTIYTCNS 95
++ L+ IHAQM++T L P D Y + VF I P + N+
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAIS-VFETIQEPNLLIWNT 61
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFG 152
+ RG+ + A Y MI GL+P+ + FP L KSCA K Q+H +K G
Sbjct: 62 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG 121
Query: 153 LASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFY 184
D ++H +LI+MY L+ + A K+F
Sbjct: 122 CDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFD 181
Query: 185 RMEIENV-------------------------------KPNAVTLVNVLTARARARDLRT 213
+ +++V +P+ T+V V++A A++ +
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 241
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
++VH +D+ GF S++++ L+D Y KC + A LF + P+ + W
Sbjct: 242 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGL--PYKDVISW 292
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + +M+ + PD ++ +CA
Sbjct: 179 MFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 238
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+HS G S+ + N LI++YS C L+
Sbjct: 239 IELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGG 298
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +D+ G
Sbjct: 299 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVA 358
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+T+L+D Y KC + A +F K L WN
Sbjct: 359 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 396
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 45/163 (27%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F + + + N+++ GYT+ NL+ EA L + EM+ G P+ S+ +CA
Sbjct: 280 LFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 339
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y++K+L G+A+ S L +LI+MY+ C ++
Sbjct: 340 IDIGRWIHVYIDKRLK------GVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 393
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ D + IF RM ++P+ +T V +L+A
Sbjct: 394 SWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSA 436
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 21/155 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA-----DYHVRL----------VFSQISNPTIY 91
L+KC +++ QI +QM+ + F D A + L +FS I NP +
Sbjct: 33 LQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGF 92
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQA 148
CN++++GY +N +A Y M+ + D + +P LF+SC+ E K +
Sbjct: 93 ICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHV 152
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+K G SD ++ NTLINMY+ C L +A K+F
Sbjct: 153 LKVGFDSDVYIQNTLINMYAVCGNL---SDARKVF 184
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 71/266 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+++ + + ++++ Y ++ EA + + EM G++ D + S+ +C+ + V
Sbjct: 245 LFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLV 304
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQ--------- 175
K +H +K G+ + L N LI+MYSSC CLDQ
Sbjct: 305 VITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISG 364
Query: 176 -----------------PD--------------------EAIKIFYRMEIENVKPNAVTL 198
PD E + +F M+IE KP+ L
Sbjct: 365 YVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETIL 424
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----V 254
V+V++A L K +H + ++G ++ L TTL++ Y K V A ++F
Sbjct: 425 VSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEE 484
Query: 255 KMLFPWNNYGQWAMSATVGPQGLVGR 280
K + WN A+ + GLV +
Sbjct: 485 KGVSTWN-----ALILGLAMNGLVDK 505
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R +F + + + ++++ GY ++ E + + EM ++G PD + S+ +C
Sbjct: 375 RALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHL 434
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
A + K +H+ K GL + L TLINMY C++
Sbjct: 435 AALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALI 494
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+++K F M+ V PN +T V VL A
Sbjct: 495 LGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGA 531
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 46/256 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY-------------HVRLVFSQISNPTIYTC 93
L C T +K+ HAQ++ DP H R VF +S P ++ C
Sbjct: 27 LNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCC 86
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
N +++ Y N + EA + M +G+ P+ + +P + K+C K+ +H A+K
Sbjct: 87 NVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVK 146
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G+ D F+ N L+ Y+ C ++ D+AI +
Sbjct: 147 CGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILL 206
Query: 183 FYRM-EIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
FY M E+V P+ T V VL A A+A D+ +H + ++ + T L+ Y
Sbjct: 207 FYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLY 266
Query: 241 CKCKFVSRAWDLFVKM 256
C +V A +F ++
Sbjct: 267 SNCGYVRMARAIFDRI 282
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 19 DNSPLINLDNINNNNINSQYQAHFCLV--SLEKCSTMRELKQIHAQMLRTSLFFDPCADY 76
D++ L+ D + + ++ A F V + + + + IH +++T + D
Sbjct: 201 DDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGT 260
Query: 77 HV-------------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP 123
+ R +F +IS+ ++ ++I+R Y L EA + +++ GL P
Sbjct: 261 GLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGAGLRP 320
Query: 124 DRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180
D +F L +C+ + +Q L + +G+A + ++++ L++ E I
Sbjct: 321 DGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGRAGDLEKAVEFI 380
Query: 181 K 181
+
Sbjct: 381 Q 381
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 18/146 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP----------CADY-----HVRLVFSQISNPTIY 91
E C +M LKQIH++ ++T + +P C+ + R +F I P+++
Sbjct: 21 FETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVF 80
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CADIYVEKQLHSQA 148
+ N + +GY+ Y EM+ + + PD + +P LFK + + ++LH
Sbjct: 81 SWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHV 140
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD 174
+K+GL S+ F HN LINMYS C +D
Sbjct: 141 VKYGLDSNVFAHNALINMYSLCGLID 166
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 31/141 (21%)
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKF 151
+++ GY N + EA + + EM + PD F S+ +CA + + + + + K
Sbjct: 233 AMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKN 292
Query: 152 GLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIF 183
+ +D+F+ N LI+MY C ++ +EA+ +F
Sbjct: 293 KVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMF 352
Query: 184 YRMEIENVKPNAVTLVNVLTA 204
+M +V P+ VT V VL+A
Sbjct: 353 SQMLKASVTPDEVTYVGVLSA 373
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F M+ +KP+ T+V+VLTA A+ L + + +D++ + + L+
Sbjct: 246 EALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALI 305
Query: 238 DAYCKCKFVSRAWDLF 253
D Y KC V A +F
Sbjct: 306 DMYFKCGNVEMALSIF 321
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 124/312 (39%), Gaps = 49/312 (15%)
Query: 4 PLPLH--HQTRTPALSSDNS--PLINLDNINNNNINSQYQAHFCLVSLEKCSTMR-ELKQ 58
PL LH HQ +T +S +N P + L N I AH C + L
Sbjct: 99 PLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH--------CEVFKLGLDN 150
Query: 59 IHAQMLRTSLFFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
H + + C + V R VF +I+ + + NS++ GY EA + +
Sbjct: 151 DHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLR 210
Query: 118 VQ-GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ G PD S+ +C D+ + + + ++ G+ +S++ + LI+MYS C L
Sbjct: 211 EESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGEL 270
Query: 174 ----------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
DEAI +F+ M+ V PN VTL VL+A
Sbjct: 271 VSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQ 265
A L K++ + G + + T L+D Y KC + A +F M P N
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM--PRKNDAS 388
Query: 266 W-AMSATVGPQG 276
W AM + + G
Sbjct: 389 WNAMISALASHG 400
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 125/286 (43%), Gaps = 52/286 (18%)
Query: 33 NINSQYQAHFCLVSL-EKCSTMRELKQIHAQ-----------MLRTSLFFDPCADYHVRL 80
N N+ + F L+SL ++C + + L+QIH Q +L S+ + L
Sbjct: 13 NTNTNHSPIFLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKDFT--YSTL 70
Query: 81 VFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFL-FYHEMIVQGLIPDRFMFPSLFKSCA-- 136
+FS I+ +P Y N ++R T + L YH+M + P+ F FP +F +CA
Sbjct: 71 IFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANL 130
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC--- 172
+I + + H + K GL +D N+++ MY C W
Sbjct: 131 EEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLL 190
Query: 173 -----LDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
L EA+++F R+ E+ +P+ ++LV+VL A DL + V V E G
Sbjct: 191 SGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGM 250
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW--AMSA 270
+ + + L+ Y KC + + +F M P ++ W A+SA
Sbjct: 251 KVNSYIGSALISMYSKCGELVSSRRIFDGM--PSRDFITWNAAISA 294
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F + + T N+ + Y + EA +H M G+ P++ ++ +CA I
Sbjct: 274 RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASI 333
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ KQ+ A GL D F+ LI+MY+ C L+
Sbjct: 334 GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMI 393
Query: 175 -------QPDEAIKIFYRMEIE--NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES- 224
+ EA+ +F RM E + +PN +T V++L+A A + R+ +
Sbjct: 394 SALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLF 453
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +E + ++D + + AWD+ KM
Sbjct: 454 GLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485
>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 695
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 32/222 (14%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
D R+V + + + S++ GY + +A L + E+ QG+ P+ F F S+ K
Sbjct: 273 DNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKG 332
Query: 135 CA-DIYVEK--QLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
CA +E+ QLH++ IK L SDSF+ +TL++MY C +
Sbjct: 333 CAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAW 392
Query: 174 ----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVD 222
EAI+ F RM ++PN +T V++LTA + A + +K + D
Sbjct: 393 NAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKD 452
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264
G E + ++D Y + + A +M N YG
Sbjct: 453 HHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYG 494
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 69 FFDPCADY--HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
+ CAD VRL F + P + + ++V G T ++H +A + M GL+P +F
Sbjct: 62 MYSHCADVPSAVRL-FDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQF 120
Query: 127 ---MFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS-------SCWCLDQP 176
+ A + QLH ++ G ++ F+ + L +MYS +C DQ
Sbjct: 121 ALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQM 180
Query: 177 ---------------------DEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTV 214
+ A+ F M E V + L +VL+A +D
Sbjct: 181 PQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLA 240
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCK 242
+ +H CV +SGF V ++ L D Y K
Sbjct: 241 RAIHSCVMKSGFEQEVAVRNALTDMYAK 268
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 34/267 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTS-------------LFFDPCAD--YHVRLVFSQISNPTIY 91
L+ C T RE Q+HA ++T+ L+ DP + + +F I PT+
Sbjct: 22 LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQA 148
+ N +++ Y ++A + +++ +PD F P + K CA + KQ+H
Sbjct: 82 SWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDSFTLPCVLKGCARLGALQEGKQIHGLV 140
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+K G D F+ ++L++MYS C + + K+F RME ++V V+ +++ AR
Sbjct: 141 LKIGFGVDKFVLSSLVSMYSKC---GEIELCRKVFDRMEDKDV----VSWNSLIDGYARC 193
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAM 268
++ + + + E +S T L+D K + A D+F +M P N W
Sbjct: 194 GEIELALEMFEEMPEKDSFSW----TILIDGLSKSGKLEAARDVFDRM--PIRNSVSW-- 245
Query: 269 SATVGPQGLVGRHSTAHQISGPCPKKA 295
+A + G +TA ++ P+++
Sbjct: 246 NAMINGYMKAGDSNTAKELFDQMPERS 272
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 55/275 (20%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDP------------CADYHV-RLVFSQISNPTIYTCNS 95
+ ++E KQIH +L+ D C + + R VF ++ + + + NS
Sbjct: 126 RLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNS 185
Query: 96 IVRGYTNKNLHHEAFLFYHEM----------IVQGL-----------IPDRF-------- 126
++ GY A + EM ++ GL + DR
Sbjct: 186 LIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSW 245
Query: 127 --MFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
M K+ D K+L Q + L + N++I Y Q +A+K+F
Sbjct: 246 NAMINGYMKA-GDSNTAKELFDQMPERSLVT----WNSMITGYERN---KQFTKALKLFE 297
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M E++ PN T++ ++A + L T + VH + +SGF + L T L++ Y KC
Sbjct: 298 VMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCG 357
Query: 245 FVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
V A +F + P G W ++ +G GLV
Sbjct: 358 SVKSALRVFRSI--PKKKLGHWTSVIVGLGMHGLV 390
>gi|147767158|emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera]
Length = 690
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTC 93
+ CS+ R Q+HAQ ++ + C + H V +VF ++ N
Sbjct: 300 MSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLGN------ 353
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL 153
+ A L + +M G+ PD F SL S + + K + K GL
Sbjct: 354 -----------FYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGL 402
Query: 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
S + N L++ +S ++Q + ++ FY + + +KPNA TL VL+ A LR
Sbjct: 403 NSKIEVSNALVSAFSKHGQIEQAYQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRH 462
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K++H + SG +S L L+ Y KC + + +F M + WN
Sbjct: 463 GKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWN 514
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKF 151
T N ++ G + EA + + EM L P F S+ SC+ V Q+H+QAIK
Sbjct: 260 TFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSARVSHQVHAQAIKM 319
Query: 152 GLASDSFLHNTLINMYSSCWCL-------DQPDE----AIKIFYRMEIENVKPNAVTLVN 200
G + + + N + MYSSC L D+ AI F +M+ ++P+ T+ +
Sbjct: 320 GFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLGNFYRLAILAFLQMQRAGIEPDEFTIGS 379
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
+L A + L VK V ++G S +E+ L+ A+ K + +A+
Sbjct: 380 LL---ASSESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAY 426
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 87/301 (28%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFF----------------DPCADYHVRLVFSQISNPTIY 91
E C TM+ LK IHA R +L + C Y RL FSQI P +
Sbjct: 190 EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRL-FSQIHQPNTF 248
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-------KQL 144
N+++RGY+ + ++ +++M + PD F F L K + + ++ ++
Sbjct: 249 FYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEI 308
Query: 145 HSQAIKFGLASDSFLHNTLINMYSS--------------------CWC--------LDQP 176
H +K G F+ N LI++Y++ W +
Sbjct: 309 HGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGEL 368
Query: 177 DEAIKIFYRM-----------------------------EIEN--VKPNAVTLVNVLTAR 205
+ A ++FY M E+ + V+P+ V +V+V++A
Sbjct: 369 ELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISAC 428
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
DL T VH+ +DE+GF V L L+D Y KC + AW +F M L WN
Sbjct: 429 TSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWN 488
Query: 262 N 262
+
Sbjct: 489 S 489
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 32/216 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R VF ++ + + +V GY EA + EM G+ PD S+ +C
Sbjct: 372 RQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSL 431
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
D+ ++H + G L N LI+MY+ C C+D
Sbjct: 432 GDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMI 491
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GF 226
++A ++F M ++P+ VT + +LTA + + + + G
Sbjct: 492 SACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGV 551
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+ VE ++D + + A+ L M P N+
Sbjct: 552 EAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND 587
>gi|302768433|ref|XP_002967636.1| hypothetical protein SELMODRAFT_88474 [Selaginella moellendorffii]
gi|300164374|gb|EFJ30983.1| hypothetical protein SELMODRAFT_88474 [Selaginella moellendorffii]
Length = 747
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 53/257 (20%)
Query: 55 ELKQIHAQMLRTSLFFD---------------PCADYHVRLVFSQISNPTIYTCNSIVRG 99
E +++HA++L ++ C D +VF I++ ++ S++R
Sbjct: 131 EGRKVHARVLEDAVLASDVFLSAALINMYGKCGCLD-KAEMVFGSIASKDDFSWTSMIRA 189
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL------HSQAIKFGL 153
Y A Y E +V+G PD F ++ ++C + EK L HSQ ++ GL
Sbjct: 190 YVEHEEFDLALEIYMEFLVEGGKPDASTFKNILRACTRLE-EKSLPQGRLVHSQILESGL 248
Query: 154 ASDSFLHNTLINMYSSCWCLDQ----------PD------------------EAIKIFYR 185
S+ L N L+ +Y S C ++ P+ +A+++F R
Sbjct: 249 GSNLALVNRLVYLYGSSGCFEEAMDLLDRMNPPEDVPWNAMVAALSQRGKNRQALELFNR 308
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
+E VKP+ VT V+ + A + D + + +H E+GF S + L++ Y KC
Sbjct: 309 TSLEGVKPSGVTFVSGIDACSDGGDEQQGRAIHARALEAGFGSDEVVTGCLINMYGKCGN 368
Query: 246 VSRAWDLFVKMLFPWNN 262
+ +A + WNN
Sbjct: 369 LEQARRMLEAS--GWNN 383
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 115/282 (40%), Gaps = 56/282 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISN--------PTIYTCNSI- 96
+L+ C+ + E K IH+Q++ L HV ++ ++ + ++ N I
Sbjct: 21 ALKNCTEVSEGKHIHSQIVSAGLDRSTYVGNHVLEMYGRLGSVEEAQEAFEKVFEKNHIS 80
Query: 97 ----VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAI 149
+ EA + +M ++G+ P R F + +C D +++H++ +
Sbjct: 81 WTLFIAALAQNGHCKEALATFKKMDLEGVKPKRLAFLRVIGACCDARDATEGRKVHARVL 140
Query: 150 KFG-LASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+ LASD FL LINMY C CLD+ D A+
Sbjct: 141 EDAVLASDVFLSAALINMYGKCGCLDKAEMVFGSIASKDDFSWTSMIRAYVEHEEFDLAL 200
Query: 181 KIFYRMEIENVKPNAVTLVNVLTA--RARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+I+ +E KP+A T N+L A R + L + VH + ESG S++ L L+
Sbjct: 201 EIYMEFLVEGGKPDASTFKNILRACTRLEEKSLPQGRLVHSQILESGLGSNLALVNRLVY 260
Query: 239 AYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQG 276
Y A DL +M PWN AM A + +G
Sbjct: 261 LYGSSGCFEEAMDLLDRMNPPEDVPWN-----AMVAALSQRG 297
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 31/197 (15%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHS 146
+ +C S++ Y L A +H + G+ ++ S+ F S + + +H+
Sbjct: 384 LVSCTSLIWAYCQHGLLENALDVFHRVEQGGIKANKVTLVSVVAAFWSSDFLDRGRAMHA 443
Query: 147 QAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQPD--E 178
+ I+ G +SD + N LI MY C W C Q D
Sbjct: 444 RLIELGHSSDVIVTNALIGMYGKCGSLPDAKMIFANARRKNAVSWNSIIGACSQQGDGKS 503
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ +F RM++ P +TL NVL A R DL K +H + S ++++L++
Sbjct: 504 ALDLFARMDLSGSSPTTITLANVLEACVRINDLPRGKVIHLEIRGSMLEHDPNVRSSLLN 563
Query: 239 AYCKCKFVSRAWDLFVK 255
Y KC + A +F +
Sbjct: 564 MYTKCGSLVDAEKIFQR 580
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 33/168 (19%)
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------- 177
F S K+C ++ K +HSQ + GL +++ N ++ MY +++
Sbjct: 18 FASALKNCTEVSEGKHIHSQIVSAGLDRSTYVGNHVLEMYGRLGSVEEAQEAFEKVFEKN 77
Query: 178 ------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH- 218
EA+ F +M++E VKP + + V+ A ARD ++VH
Sbjct: 78 HISWTLFIAALAQNGHCKEALATFKKMDLEGVKPKRLAFLRVIGACCDARDATEGRKVHA 137
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
+ ++++ S V L L++ Y KC + +A +F + F W +
Sbjct: 138 RVLEDAVLASDVFLSAALINMYGKCGCLDKAEMVFGSIASKDDFSWTS 185
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 123/289 (42%), Gaps = 60/289 (20%)
Query: 46 SLEKCSTMREL---KQIHAQML----RTSLF--------FDPCADY-HVRLVFSQISNPT 89
+++ CS++ +L KQ H Q L + LF + C R++F +I++
Sbjct: 88 AIKACSSLLDLHWGKQTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRN 147
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG---------LIPDRFMFPSLFKSCADIY- 139
I S++ GY + HEA L + + +++ ++ D S+ +C+ I
Sbjct: 148 IVIWTSMITGYIQNDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISG 207
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQ--------------- 175
+ K +H +K GL D + NTL++ Y+ C D+
Sbjct: 208 KGMTKGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAV 267
Query: 176 ------PDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
EA ++F+ M + VK NAVTL +L A A + L+T K +H V G
Sbjct: 268 YAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRMGLDD 327
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
+V + T+L+D YCKC V A F M N W AM A G G
Sbjct: 328 NVIVGTSLIDMYCKCGRVQMARKTFDGM--KEKNVKSWTAMVAGYGMHG 374
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 49/244 (20%)
Query: 76 YHVRLVFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+++R F++ T +++ NS++ E+ ++ M L P+R FP K+
Sbjct: 32 FNLRTWFNKYFEKTNVFSWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKA 91
Query: 135 CA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
C+ D++ KQ H QA+ FG SD F+ + L++MYS C L
Sbjct: 92 CSSLLDLHWGKQTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIW 151
Query: 174 ----------DQPDEAIKIFYRMEIENVKPN---------AVTLVNVLTARARARDLRTV 214
D EA+ +F + IE + N +V +V+VL+A +R
Sbjct: 152 TSMITGYIQNDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISGKGMT 211
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN----YGQW 266
K VH V + G V ++ TL+DAY KC V + +F +++ WN+ Y Q
Sbjct: 212 KGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAVYAQN 271
Query: 267 AMSA 270
+S+
Sbjct: 272 GLSS 275
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ +++ N +V GYT EA YH ++ G+ PD + FPS+ +SCA D
Sbjct: 91 VFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMD 150
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ +++H+ ++F D + N LI MY C +
Sbjct: 151 LVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISG 210
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D+ E +++F+RM ++ P+ +T+ +V++A D R ++H V + + +
Sbjct: 211 YFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGN 270
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L+ Y A +F M
Sbjct: 271 ISVYNSLIQMYLSVGHWKEAESVFSGM 297
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTI 90
L C+ +L +++HA ++R D C D R++F ++
Sbjct: 142 LRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDR 201
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY + E + M + PD S+ +C D + QLHS
Sbjct: 202 ISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSY 261
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQ--PDEA 179
++ + ++N+LI MY S W C+D PD+A
Sbjct: 262 VVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKA 321
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ + MEI P+ VT+ +VL+A A L ++H+ + +G +V + +L+D
Sbjct: 322 LETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDM 381
Query: 240 YCKCKFVSRAWDLF 253
Y KCK + +A ++F
Sbjct: 382 YSKCKRIEKALEIF 395
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VFS + + + +I+ G + L +A Y M + G +PD S+ +CA +
Sbjct: 293 VFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQ 352
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PDEAI--------- 180
+ +LH A + G + N+LI+MYS C +++ PD+ +
Sbjct: 353 LDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVING 412
Query: 181 ----------KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
IF+R I KPN+VTL++ L+A AR L K +H ++G
Sbjct: 413 LRINNRCFEALIFFRKMILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDG 472
Query: 231 ELKTTLMDAYCKCKFVSRAWDLF---VKMLFPWN----NYGQWAMSATV 272
L ++D Y +C + A + F K + WN Y Q A V
Sbjct: 473 FLPNAILDLYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQKGKGAMV 521
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 52/260 (20%)
Query: 52 TMRELKQIHAQMLRTSLFFDPCADYHVRL---------------VFSQISNPTIYTCNSI 96
+RE +++HA M++T + PC RL VF + + + ++
Sbjct: 73 AIREGQRVHAHMIKT--HYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAM 130
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGL 153
+ Y+ + +A + +M+ G P+ F F ++ SC + + +Q+HS IK
Sbjct: 131 ISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNY 190
Query: 154 ASDSFLHNTLINMYSSCW----------CLDQPD------------------EAIKIFYR 185
+ ++ ++L++MY+ CL + D EA+++F R
Sbjct: 191 EAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRR 250
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK- 244
++ E ++ N VT +VLTA + L K+VH + S S+V L+ +L+D Y KC
Sbjct: 251 LQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGN 310
Query: 245 --FVSRAWD-LFVKMLFPWN 261
+ R +D L + + WN
Sbjct: 311 LTYARRIFDTLHERTVISWN 330
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 50/281 (17%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HV 78
NN ++ H L + + E K IHA +L + + C D +
Sbjct: 10 NNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYA 69
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F ++S+ + T +++ GY+ + +A L EM+ GL P++F SL K+ +
Sbjct: 70 RKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGV 129
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
D+ +QLH +++G S+ ++ +++MY+ C L+
Sbjct: 130 GSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNA 189
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
Q D+A +F M ENVKP T +VL A A L K VH + + G
Sbjct: 190 LIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWG 249
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ TL+D Y K + A +F ++ + WN+
Sbjct: 250 EKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNS 290
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
++ + + + + N+ + G + ++ ++ M+ +G IP+ + F S+ SC+ D
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
++ +Q+H+ IK L ++F+ LI+MY+ C L+
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q ++A+ F +M+ E VKPN TL L+ + L +++H V +SG S
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD 651
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ + + L+D Y KC + A LF ++ WN
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWN 687
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 108/270 (40%), Gaps = 51/270 (18%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNP 88
L+ CS L KQ+HAQ + L D C + + +F +
Sbjct: 218 TGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQ 277
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LH 145
T N ++ GY + + M+ + + F ++ K CA+ KQ +H
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC--------------------W-----CLDQ---PD 177
S IK G + F+ L++MYS C W CLDQ +
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E+IK+F+ M + + PN T+ ++L+A +L+ + +H CV + GF + V + L+
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALV 457
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNNY 263
Y K V L+ M L WN Y
Sbjct: 458 TMYMKNGCVHDGTKLYESMVDRDLISWNAY 487
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
+ F+++S ++T I+ Y N +A ++ +M +G+ P+ F C A
Sbjct: 572 VAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLA 631
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ +QLHS K G SD F+ + L++MY+ C C++
Sbjct: 632 SLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIIC 691
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q ++A+ F M E + P+ VT +L+A
Sbjct: 692 GYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSA 727
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 39/224 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I P I ++++ + E+ +H M + +P+++ SL + +
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGN 430
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + +H+ K+G +D + N L+ MY C+
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D + IFY M E PN T +++L + + D+ ++VH + ++ +
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDN 550
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW----NNYGQ 265
+ T L+D Y KC ++ A F V+ LF W NY Q
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 33/170 (19%)
Query: 128 FPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW--------CLDQP 176
+ S+ + CA + V K +H +K + DS L +L+N+Y+ C P
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 177 D--------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
D ++I +F M+ E + PN TL L A + L K+
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+H + G + + + L+D Y KC + A +F+ M P N W
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGM--PEQNDVTW 282
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F +IS P++ T N+++ GY + LH + + M Q + PDR + SC+
Sbjct: 369 ARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSR 428
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + Q+HS +++F L +D F+ + L++MYS C +
Sbjct: 429 LGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSM 488
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+EA F +M + P + +++ + AR + +++H + + G+
Sbjct: 489 ISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGY 548
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+V + + L+D Y KC + A F K + WN
Sbjct: 549 DQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWN 587
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R + ++ + + + N+++ EA Y M+ +GL+P F S+ +C
Sbjct: 93 ARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGA 152
Query: 138 IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ ++ H A+K GL + F+ N L+ MY+ C ++
Sbjct: 153 VAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAM 212
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARA--------RDLRTVKRVH 218
D+A+++F RM V+ + V + +VL + A+A R R + +H
Sbjct: 213 MGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIH 272
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
+ GF S + +L+D Y KC + A +F + WN +GQ
Sbjct: 273 ALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQ 327
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 35/181 (19%)
Query: 59 IHAQMLRTSLFFD---PCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYH 114
+H M S D C + R++F++++ + NS++ G +L+ EAF F+
Sbjct: 447 LHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFK 506
Query: 115 EMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171
+M G++P + S+ SCA + +Q+H+Q +K G + ++ + LI+MY+ C
Sbjct: 507 QMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCG 566
Query: 172 CLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLT 203
+D ++A+ +F M +P+ VT + VLT
Sbjct: 567 NMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLT 626
Query: 204 A 204
Sbjct: 627 G 627
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 50/221 (22%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
VRL F +++P + +++ G +A + M G+ D S+ SCA
Sbjct: 195 VRL-FDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQ 253
Query: 137 ------DIY----VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR- 185
D+ + + +H+ ++ G SD + N+LI+MY+ C Q DEA+K+F
Sbjct: 254 ACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCM---QMDEAVKVFDSL 310
Query: 186 ------------------------------MEIENVKPNAVTLVNVLTARARARDLRTVK 215
ME +PN VT N+L + +ARD+ + +
Sbjct: 311 PNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSAR 370
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + V TL+ YC+ + +LF +M
Sbjct: 371 AMFDKISR----PSVTTWNTLLSGYCQEELHQDTVELFRRM 407
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
++ + + + + N+ + G + ++ ++ M+ +G IP+ + F S+ SC+ D
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
++ +Q+H+ IK L ++F+ LI+MY+ C L+
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q ++A+ F +M+ E VKPN TL L+ + L +++H V +SG S
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD 651
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ + + L+D Y KC + A LF ++ WN
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWN 687
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 108/270 (40%), Gaps = 51/270 (18%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNP 88
L+ CS L KQ+HAQ + L D C + + +F +
Sbjct: 218 TGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQ 277
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LH 145
T N ++ GY + + M+ + + F ++ K CA+ KQ +H
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC--------------------W-----CLDQ---PD 177
S IK G + F+ L++MYS C W CLDQ +
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E+IK+F+ M + + PN T+ ++L+A +L+ + +H CV + GF + V + L+
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALV 457
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNNY 263
Y K V L+ M L WN Y
Sbjct: 458 TMYMKNGCVHDGTKLYESMVDRDLISWNAY 487
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
+ F+++S ++T I+ Y N +A ++ +M +G+ P+ F C A
Sbjct: 572 VAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLA 631
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------------------- 174
+ +QLHS K G SD F+ + L++MY+ C C++
Sbjct: 632 SLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIIC 691
Query: 175 ------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q ++A+ F M E + P+ VT +L+A
Sbjct: 692 GYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSA 727
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 39/224 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I P I ++++ + E+ +H M + +P+++ SL + +
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGN 430
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + +H+ K+G +D + N L+ MY C+
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D + IFY M E PN T +++L + + D+ ++VH + ++ +
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDN 550
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW----NNYGQ 265
+ T L+D Y KC ++ A F V+ LF W NY Q
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 33/170 (19%)
Query: 128 FPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW--------CLDQP 176
+ S+ + CA + V K +H +K + DS L +L+N+Y+ C P
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 177 D--------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
D ++I +F M+ E + PN TL L A + L K+
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+H + G + + + L+D Y KC + A +F+ M P N W
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGM--PEQNDVTW 282
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 110/274 (40%), Gaps = 74/274 (27%)
Query: 53 MRELKQIHAQMLRTSLFFD----------PCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
M +LKQIHA LR L P Y L F QI P++Y N ++ +++
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTL-FDQIPKPSVYLYNKFIQTFSS 59
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
H +L Y +M QG P+++ F LF +CA ++Y + LHS K G ASD F
Sbjct: 60 IGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFA 119
Query: 160 HNTLINMYSSCWCL-------------DQP---------------DEAIKIFYRMEIENV 191
L++MY+ L D P + A+++F +M + NV
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV 179
Query: 192 --------------------------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
KPN V++ +VL A ++ L KR+
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+GF+ + + +++ + +C + A +F
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVF 273
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L KQIHA++L+ +F+ C D + ++FS++
Sbjct: 66 LQGCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVR 125
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+++ +I+ L A + + EM+ + PD F+ P++FK+C + + +H
Sbjct: 126 NVFSWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVH 185
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+K GL F+ ++L +MY C LD +
Sbjct: 186 GYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNE 245
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++ M + V+P VT+ L+A A + + H +G L T+L+
Sbjct: 246 EAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLL 305
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWN 261
+ YCK + A +F +M + WN
Sbjct: 306 NFYCKVGLIEYAEMIFDRMFEKDVVTWN 333
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF +I + N+++ GY ++ EA +M G+ P R + + A++
Sbjct: 217 RKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANM 276
Query: 139 Y-VEK--QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
VE+ Q H+ AI GL D+ L +L+N Y ++ +
Sbjct: 277 AGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLI 336
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+AI + M +E +K + VTL +++A AR +L+ K V
Sbjct: 337 SGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLE 396
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S + L +T MD Y KC + A +F K L WN
Sbjct: 397 SDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWN 434
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ ++F ++ + T N ++ GY + L +A M ++ L D +L + A
Sbjct: 316 YAEMIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAA 375
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------- 173
++ + K++ + L SD L +T ++MY+ C +
Sbjct: 376 RTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNT 435
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+++FY M++E+V PN +T ++ +R R ++ K + + SG
Sbjct: 436 LLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSG 495
Query: 226 FWSHVELKTTLMDA 239
++ TT+M+
Sbjct: 496 ITPNLISWTTMMNG 509
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS---CAD 137
VF + N+++ Y EA ++EM ++ + P+ + + S A+
Sbjct: 421 VFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAE 480
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ K++ Q G+ + T++N C +EAI +M+ ++PNA +
Sbjct: 481 VNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGC---SEEAIHFLRKMQESGMRPNAFS 537
Query: 198 LVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ L+A A + +H + + S ++T+L+D Y KC +++A +F
Sbjct: 538 ITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETSLVDMYAKCGDINKAERVF 594
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 80/202 (39%), Gaps = 33/202 (16%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQL 144
P + + +++ G EA F +M G+ P+ F + A++ + + +
Sbjct: 498 PNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSI 557
Query: 145 HSQAIK-FGLASDSFLHNTLINMYSSCWCLDQPD-------------------------- 177
H I+ +S + + +L++MY+ C +++ +
Sbjct: 558 HGYIIRNLRHSSSASIETSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGN 617
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGFWSHVELKT 234
EA+ ++ +E KP+++T ++L+A A D+ RV V G +E
Sbjct: 618 VTEAVALYRSLEDMGXKPDSITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYG 677
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
L+D + K +A L +M
Sbjct: 678 LLVDLFASAKETDKALRLMEEM 699
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF ++S + +++ GY L EA Y +M G++P ++ S+ SC
Sbjct: 96 ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155
Query: 136 ADIYVEKQL-HSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP---------- 176
A+++ + +L H+Q K G S+ F+ N +I +Y C D P
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTL 215
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ A++IF M+ + P+ VT+ ++L A A DL+ ++H + ++G
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
S ++ +L+D Y KC V A +F
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIF 302
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS---------LFFDPCADY----HVRLVFSQISNPTI 90
L C+ RE+ +QIH+ ++T + D + Y R V + +
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ S++ GY +A + EM G+ PD S CA I + Q+H++
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
G + D + N L+N+Y+ C + + +EA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEA 531
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F RM+ VK N T V+ L+A A +++ K++H V ++G E+ L+
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC A F +M
Sbjct: 592 YGKCGSFEDAKMEFSEM 608
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 110/257 (42%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD------------PCADYHVRLVFSQISNPT-I 90
L C+++ +L+ Q+H+ + + + D C D LV S+ T +
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV 310
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
N ++ + N ++F + +M G+ P++F +P + ++C +I + +Q+HS
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSL 370
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
++K G SD ++ LI+MYS L++ +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDA 430
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F M+ + P+ + L + ++ A +R ++H + SG+ V + L++
Sbjct: 431 LAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNL 490
Query: 240 YCKCKFVSRAWDLFVKM 256
Y +C + A+ F +M
Sbjct: 491 YARCGRIREAFSSFEEM 507
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 18/136 (13%)
Query: 53 MRELKQIHAQMLRTSLFFDP---------CADYHV------RLVFSQISNPTIYTCNSIV 97
M++LKQI AQM++T++ +P C HV + VF+ I++P + N+I+
Sbjct: 1 MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLA 154
R Y+N + AFL Y +M+ + + + FP L ++C ++ Q+H IK G
Sbjct: 61 RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120
Query: 155 SDSFLHNTLINMYSSC 170
SD F N L+++Y+ C
Sbjct: 121 SDVFALNALLHVYALC 136
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 133/339 (39%), Gaps = 85/339 (25%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLF-----------FDPCADY----HVRLVFSQISNPTIY 91
LE C +M E KQI A + + L F + + H +F QI +PTI
Sbjct: 19 LENCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTIS 78
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
NSI+RG++ + + + +M+ G+ PD +P + K+ A ++ + +H +
Sbjct: 79 NWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRI 138
Query: 149 IKFGLASDSFLHNTLINMYSS-------------------------------CWCLDQ-- 175
K GL D F+ N+LI+MY S C LD
Sbjct: 139 AKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAR 198
Query: 176 ------PDE--------------------AIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
PD A+ IF RM + K N VT+V+VL A A
Sbjct: 199 QVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLG 258
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AM 268
L + +H+ + ++ + L+T+LMD Y KC + A +F + + W +
Sbjct: 259 ALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTI 318
Query: 269 SATVGPQGLVGRHSTAH-----QISGPCPKKAHKLFFFS 302
+ GLV H + Q+ G P + L FS
Sbjct: 319 IGGLATHGLV--HESLELFKEMQVLGIVPDEITYLCLFS 355
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 63 MLRTSLF--FDPCADYHVRL-VFSQI--SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
+LRTSL + C + VF + + N+I+ G L HE+ + EM
Sbjct: 280 VLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQ 339
Query: 118 VQGLIPDRFMFPSLFKSCA 136
V G++PD + LF +CA
Sbjct: 340 VLGIVPDEITYLCLFSACA 358
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 42/235 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL----------------FFDPCADYHVRLVFSQISNPTI 90
L C+ ++KQ+HA ++R L P Y + LVF Q++ P
Sbjct: 49 LHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPL-LVFGQVNYPNP 107
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ +++RGY + L E+ FY M G+ P F F +LFK+C ++ + KQ+H+Q
Sbjct: 108 FLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQ 167
Query: 148 AIKF-GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
I G ASD ++ N++I++Y C L A K+F M +V V+ ++ A A
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGC---ARKVFDEMSERDV----VSWTELIVAYA 220
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELK-----TTLMDAYCKCKFVSRAWDLFVKM 256
+ D+ + SG + + LK T ++ Y + A + F KM
Sbjct: 221 KYGDMESA---------SGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKM 266
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLH-----SQAI 149
++V GY EA ++ +M G+ D + +CA + K + ++
Sbjct: 245 AMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERS 304
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
FG + + + + LI+MYS C PDEA K+F M+ NV
Sbjct: 305 GFGPSGNVVVGSALIDMYSKC---GSPDEAYKVFEVMKERNV 343
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF + +++ +S++ GY H A +H+M+ + P++ F + +C+
Sbjct: 334 VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGL 393
Query: 138 IYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ +QL ++ K FG+A + ++++ CL +EA+ + M +E PN
Sbjct: 394 VEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCL---EEALDLVKTMPME---PNGG 447
Query: 197 TLVNVLTA 204
+L A
Sbjct: 448 VWGALLGA 455
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 41/221 (18%)
Query: 74 ADYHV--------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
A YH+ R VF QI P++ N ++R Y ++ Y M+ G+ P
Sbjct: 48 ARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTN 107
Query: 126 FMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----- 177
F FP L K+C+ + + + +H+ A GL+ D ++ L++MY+ C L Q
Sbjct: 108 FTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNS 167
Query: 178 -------------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
+ I +M+ V PN+ TLV++L +A L
Sbjct: 168 ISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALH 227
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K +H + F+ +V L+T L+D Y KC + A +F
Sbjct: 228 QGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIF 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 114/269 (42%), Gaps = 51/269 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCAD--------------YHVRLVFSQISNPT 89
L ++ + + + + K IHA +R + FFD ++ R +F+ ++
Sbjct: 217 LPTIGQANALHQGKAIHAYYIR-NFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKN 275
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
++++ GY + +A Y +M+ + GL P ++ ++CA D+ K+LH
Sbjct: 276 DVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLH 335
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PD 177
IK G+ D+ + N+LI+MY+ C +D +
Sbjct: 336 CHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAE 395
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ IF +M+ + P T++ +L A + L+ H GF + + ++
Sbjct: 396 KALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAII 455
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D Y KC ++ + ++F +M + WN
Sbjct: 456 DMYSKCGKITISREIFDRMQNRDIISWNT 484
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF QI P N++ RGY+ H + + + +M ++P+ F FP + KSC I
Sbjct: 7 VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
K ++H IK G ++ F+ TLI+MY+S AI YR+ E ++ N +
Sbjct: 67 LKEGEEVHCFVIKSGFRANPFVATTLIDMYAS-------GGAIHAAYRVFGEMIERNVIA 119
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM- 256
++ DL T +R+ E + L T++ Y + K V RA +LF KM
Sbjct: 120 WTAMINGYITCCDLVTARRLFDLAPE----RDIVLWNTMISGYIEAKDVIRARELFDKMP 175
Query: 257 ---LFPWN 261
+ WN
Sbjct: 176 NKDVMSWN 183
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKR 216
F N LI Y+ C E + F RM ++ V PN TLVNVL+A AR L K
Sbjct: 211 FSWNALIGGYTRNGCFS---EVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKW 267
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
VH + G+ +V ++ LMD Y KC V A D+F M L WN
Sbjct: 268 VHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWN 316
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 32/156 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY 139
+F ++ +++ N+++ GYT E + M+V G ++P+ ++ +CA +
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD--------- 177
+ K +H A G + ++ N L++MY+ C +D D
Sbjct: 261 ALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIG 320
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F M+I P+ +T + +L A
Sbjct: 321 GLAVHGHGADALNLFSHMKIAGENPDGITFIGILCA 356
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 116/276 (42%), Gaps = 52/276 (18%)
Query: 52 TMRELKQIHAQM---------------LRTSLFFDPCADYHVRLVFSQISNPTIYTCNSI 96
T+ LKQIH + L+ +LFF + L+FS P I+ NS+
Sbjct: 25 TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTK--YSYLLFSHTQFPNIFLYNSL 82
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGL 153
+ G+ N +L HE + + GL F FP + K+C K LHS +K G
Sbjct: 83 INGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGF 142
Query: 154 ASDSFLHNTLINMYSSCWCLDQ--------PD--------------------EAIKIFYR 185
D +L+++YS L+ PD EAI +F +
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M VKP++ +V VL+A DL + + + K ++E + ++TTL++ Y KC
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 246 VSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
+ +A +F M + W+ Q S + +G+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F +I + ++ T ++ GYT H EA + +M+ G+ PD + + +C D
Sbjct: 168 LFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGD 227
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + + + +SF+ TL+N+Y+ C +++
Sbjct: 228 LDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQG 287
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P E I++F +M EN+KP+ ++V L++ A L + +D F ++
Sbjct: 288 YASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTN 347
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + L+D Y KC ++R +++F +M
Sbjct: 348 LFMANALIDMYAKCGAMARGFEVFKEM 374
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 53 MRELKQIHAQMLRTSL--FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
M E++ +RT+L + C R VF + I T +++++GY + + E
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEG 297
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI----KFGLASDSFLHNTLIN 165
+ +M+ + L PD+F SCA + L I + ++ F+ N LI+
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLGA-LDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 166 MYSSCWCLDQPDEAIK 181
MY+ C + + E K
Sbjct: 357 MYAKCGAMARGFEVFK 372
>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 765
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 119/263 (45%), Gaps = 48/263 (18%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
+ L+ C+ + +L KQIH+ ++ L F+ CA + R F I P
Sbjct: 298 IILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEP 357
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
++ ++++ GY A + + +G++ + F++ ++F++C+ D+ Q+H
Sbjct: 358 NDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIH 417
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD------------------ 177
+ AIK GL + + +I+MYS C +D+PD
Sbjct: 418 ADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAF 477
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWSHVELKTTL 236
EA+++F M+ V+PNAVT + +L A + + ++ K++ + DE G ++ +
Sbjct: 478 EALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCM 537
Query: 237 MDAYCKCKFVSRAWDLFVKMLFP 259
+D Y + + A ++ + F
Sbjct: 538 IDVYSRAGLLQEALEVIRSLPFE 560
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---I 138
F +I + + + ++I+ YT + EA + M+ G+ P+ +F +L S D +
Sbjct: 149 FDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSML 208
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------------- 177
+ KQ+HSQ I+ G A++ + + NMY C LD +
Sbjct: 209 DLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGY 268
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
+A+ +F +M E V+ + +L A A DL T K++H + G S V
Sbjct: 269 TKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEV 328
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
+ T L+D Y KC A F + P N++ A+ A G R
Sbjct: 329 SVGTPLVDFYVKCARFEAARQAFESIHEP-NDFSWSALIAGYCQSGQFDR 377
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR +F + + + N+I+ G L+ E EM L PD F S L
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--- 171
DI K++H +I+ GL +D ++ ++LI+MY+ C W
Sbjct: 252 NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSI 311
Query: 172 ---CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
C+ DE ++ F +M + +KP + + +++ A A L K++H + +GF
Sbjct: 312 IAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGF 371
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ + ++L+D Y KC + A +F +M
Sbjct: 372 DENIFIASSLVDMYAKCGNIRTAKQIFDRM 401
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 67/249 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F+ I P S++R YT+ L H++ + M+ GL PD +FPS+ KSCA D
Sbjct: 62 LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + LH I+ GL D + N L+NMYS L++
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181
Query: 176 -------PDEAIKIFYRMEIEN-------------------------------VKPNAVT 197
D KIF M ++ +KP++ T
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
L +VL A D+ K +H C G + + + ++L+D Y KC V+ + +F +
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT 301
Query: 258 ----FPWNN 262
WN+
Sbjct: 302 ERDGISWNS 310
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF ++ + + S++ G + E + ++EM + P + S+ +CA
Sbjct: 175 NARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACA 234
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL 173
++ + +H IK+GL+++SF+ +L++MY+ C W
Sbjct: 235 MLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTA 294
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+P +A+++F + ++ PN+VT+ V++A A+ R L + VH + G
Sbjct: 295 MIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLG 354
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNN 262
++ L+D Y KC+ + A +F ++L WN+
Sbjct: 355 TMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNS 395
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 51/303 (16%)
Query: 23 LINLDNINNNNIN-SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------F 69
L+ + + +N++ S+Y L + + + + IH +++ L
Sbjct: 208 LVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDM 267
Query: 70 FDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFM 127
+ C R VF ++ I +++ GYT +A LF H+ V ++P+
Sbjct: 268 YAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVS-IVPNSVT 326
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------- 177
++ + A + + + +H+ +K G + N L++MY+ C L + +
Sbjct: 327 IATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRIL 386
Query: 178 ---------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
E++ +F RM ++ + P+A+++VN L+A DL K
Sbjct: 387 IKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKG 446
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
H + F S++ + T L++ Y KC + A +F M N W SA +G G
Sbjct: 447 FHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTD--RNSVTW--SAMIGGYG 502
Query: 277 LVG 279
+ G
Sbjct: 503 MQG 505
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F +I + NS++ GY+ + +E+ + ++ M +QG+ PD + +C AD
Sbjct: 381 IFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLAD 440
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+++ K H+ AIK+ S+ +++ L+N+YS C L
Sbjct: 441 LHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGG 500
Query: 175 ---QPDEA--IKIFYRMEIENVKPNAVTLVNVLTA 204
Q D A I +F M EN+ PN V ++L+A
Sbjct: 501 YGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSA 535
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 35/155 (22%)
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
+I + + N+I+ G++ EA F+ EM+ GL PD F F ++ +CA+ I
Sbjct: 39 DRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIE 98
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------- 177
+ KQ+H Q IK + D ++ +TL++MY+ C D PD
Sbjct: 99 LGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICG 156
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM+ ENV PN T V VL A
Sbjct: 157 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRA 191
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 41 HFCLVS-LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFS 83
HF + L+ C+ + + KQIH Q+++ + D C D LVF
Sbjct: 81 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 140
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
++ + N+++ GY L EA + M + ++P+ F ++ ++C+ +
Sbjct: 141 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 195
>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Glycine max]
Length = 715
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 67/288 (23%)
Query: 39 QAHFCLVS------LEKCST---MRELKQIHAQMLRTSLFF------------------D 71
+A FC+ L+KCST +RE +Q+HA +L T+ F
Sbjct: 3 KACFCVAEGHALSLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCG 62
Query: 72 PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH--EAFLFYHEMIVQGLIPDRFMFP 129
D H LVF ++ TI + N+++ Y+ + +H A Y +M+ GL P F
Sbjct: 63 SLTDSH--LVFDKMPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFT 120
Query: 130 SLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------- 173
SL ++ + + + LH++ K GL +D L +L+NMYS+C L
Sbjct: 121 SLLQASSLLEHWWFGSSLHAKGFKLGL-NDICLQTSLLNMYSNCGDLSSAELVFWDMVDR 179
Query: 174 ---------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
++ +E I +F +M P T VL + +R +D R+ + +H
Sbjct: 180 DHVAWNSLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIH 239
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + L+ L+D YC + A+ +F +M L WN+
Sbjct: 240 AHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNS 287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LVFSQ+S P + NS++ GY++ + EA + E++ QGLIPD+ F SL +C+
Sbjct: 475 LVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSR 534
Query: 140 VEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180
+ +Q L + GL ++ ++ ++S L++ +E I
Sbjct: 535 LVEQGKFLWNYMNSIGLIPGLKHYSCMVTLFSRAALLEEAEEII 578
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 113/278 (40%), Gaps = 57/278 (20%)
Query: 39 QAHFCLVSLEKCSTMRELKQ---IHAQMLRTSLFFD-----PCADYHVRL--------VF 82
Q +C+V L CS +++ + IHA ++ ++ D D + +F
Sbjct: 216 QFTYCMV-LNSCSRLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIF 274
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEA---FLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
S++ NP + + NS++ GY+ +A F+ EM PD + + + +
Sbjct: 275 SRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPK--PDDYTYAGIISATGVFP 332
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMY------SSCW---CLDQPDE--------- 178
K LH++ IK G F+ +TL++MY + W C +
Sbjct: 333 SSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMIT 392
Query: 179 ----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
AI+ F++M E + + L V+ A A LR + +H + G+
Sbjct: 393 GYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDV 452
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
+ + +L+D Y K + A+ +F ++ P WN+
Sbjct: 453 EMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCWNS 490
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 106/254 (41%), Gaps = 44/254 (17%)
Query: 57 KQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
K +HA++++T S++F VF IS + ++ GY+
Sbjct: 338 KSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMITGYSKM 397
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLH 160
A + +M+ +G D ++ + +CA++ V +Q +H A+K G + +
Sbjct: 398 TDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDVEMSVS 457
Query: 161 NTLINMYSSCWCLD----------QPD------------------EAIKIFYRMEIENVK 192
+LI+MY+ L+ +PD EA+++F + + +
Sbjct: 458 GSLIDMYAKNGSLEAAYLVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLI 517
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ VT +++L+A + +R + K + ++ G ++ + ++ + + + A ++
Sbjct: 518 PDQVTFLSLLSACSHSRLVEQGKFLWNYMNSIGLIPGLKHYSCMVTLFSRAALLEEAEEI 577
Query: 253 FVKMLFPWNNYGQW 266
K + +N W
Sbjct: 578 INKSPYIEDNLELW 591
>gi|255547321|ref|XP_002514718.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546322|gb|EEF47824.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 399
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 29/200 (14%)
Query: 36 SQYQAHF---CLVSLEKCSTMRELKQIHAQML---------------RTSLFFDPCADYH 77
SQ Q H + +L C+ + ++KQ+HA +L RT + D +
Sbjct: 33 SQIQQHLETHIVTTLGSCTDISQIKQVHAHILSNGLAQCCYVITKLVRTLTNLNIPMDPY 92
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R +F+Q+ P + ++++RGY+ + + E+ Y M ++ + P F F ++FK+C
Sbjct: 93 PRSIFNQVKFPNPFLYSAVIRGYSIEGILSESVKVYSFMRMEHVGPVSFTFSAIFKACGA 152
Query: 136 -ADIYVEKQLHSQAIKF-GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
D+++ +Q+H+Q+I G SD F+ NTLI+MY C L+ K+F M ++V
Sbjct: 153 VGDLHLGRQMHAQSILIGGFCSDLFVSNTLIDMYIKCGVLEC---GRKVFNAMPEKDV-- 207
Query: 194 NAVTLVNVLTARARARDLRT 213
++ ++ A A++ D+ +
Sbjct: 208 --ISWTEMIVAYAKSGDMDS 225
>gi|302771700|ref|XP_002969268.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
gi|300162744|gb|EFJ29356.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
Length = 849
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 124/303 (40%), Gaps = 54/303 (17%)
Query: 11 TRTPALSSDNSPLINLDNI--------NNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQ 62
T P++S D+S + L N+ ++ S QA L+ A
Sbjct: 19 TSQPSVSDDHSKFLKLVNLCAERKLLHEATSVYSSIQAQGILLD----------GFFGAS 68
Query: 63 MLRTSLFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121
++R F C H VF Q+ + ++ S+V + + A+LF+ M ++G+
Sbjct: 69 VVR---MFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGV 125
Query: 122 IPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----- 176
+PDR F S+ +C + + +H I L SD + N L+ M + C+ LD
Sbjct: 126 LPDRVTFISILNACESLAQGELVHRLIIDKNLESDVVIGNALMKMLAKCYDLDGAARFFQ 185
Query: 177 -----------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
EA + RM +E V PN +T + VL A + ARD
Sbjct: 186 RMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSARD--- 242
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273
+ V+ V E+ + S + ++ + KC + RA D+F +M W+ AM A +
Sbjct: 243 AELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMK-RWDVKSWNAMVAALA 301
Query: 274 PQG 276
G
Sbjct: 302 QHG 304
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 46/258 (17%)
Query: 44 LVSLEKCS---TMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISN 87
+++L C+ ++ + K IH+++ R L + C D R VF I
Sbjct: 328 VIALSTCAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILG 387
Query: 88 PTIYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS 146
+ + N+++ Y +++LH A + M++ G+ P R ++ + V KQLH
Sbjct: 388 KNVVSWNNMIAAYGRDESLHSRALEIFRLMLLDGVRPTRTTALNVVSAVECQSVGKQLHG 447
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
+ GL SDSF+ + L+NMY L QP E
Sbjct: 448 WIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPRE 507
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A++ F RM +E N T + L+A + R + +R+H + ESG + + L+
Sbjct: 508 ALEWFSRMLLEGASGNRATFLLALSAVSPDR-VCYGRRLHGLIAESGLEADNNVANALIS 566
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y +CK + A + F ++
Sbjct: 567 MYARCKSLEDARNTFDRL 584
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 112/280 (40%), Gaps = 56/280 (20%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
+VS +C ++ KQ+H ++ T L+ D + R VF +I +
Sbjct: 432 VVSAVECQSVG--KQLHGWIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDV 489
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQA 148
+ N+IV EA ++ M+++G +R F + + V ++LH
Sbjct: 490 FAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALSAVSPDRVCYGRRLHGLI 549
Query: 149 IKFGLASDSFLHNTLINMYSSC--------------------W------CLDQPD--EAI 180
+ GL +D+ + N LI+MY+ C W C+D EAI
Sbjct: 550 AESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAI 609
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F RME+E P+ VT VL A R K VH E G S+V + T L+ +
Sbjct: 610 DLFQRMELE---PDRVTFTTVLEACTIVSAHREGKLVHSRARELGLESNVFVATALIHMH 666
Query: 241 CKCKFVSRAWDLFVKMLFP----WN----NYGQWAMSATV 272
K + A +F + P WN Y Q S +V
Sbjct: 667 SKFGNLGEARRIFEAVEAPTLACWNAMLGGYAQTGHSQSV 706
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 55/268 (20%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPT 89
L L CS+ R+ + ++ ++ D C D R VF ++
Sbjct: 231 LAVLAACSSARDAELVYGNVVEAEWESDTMVANASINMFSKCGCLD-RARDVFHRMKRWD 289
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE--KQLHSQ 147
+ + N++V EA + M + + + +L A +E K +HS+
Sbjct: 290 VKSWNAMVAALAQHGFSSEALELFRRMPSEVAVDKTTLVIALSTCAAPESLEDGKSIHSR 349
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------DE----- 178
+ GL +D L+ MYS C L + DE
Sbjct: 350 VARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSR 409
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV-KRVHKCVDESGFWSHVELKTTLM 237
A++IF M ++ V+P T +NV++ A + ++V K++H + ++G +S + + L+
Sbjct: 410 ALEIFRLMLLDGVRPTRTTALNVVS----AVECQSVGKQLHGWIVDTGLYSDSFIGSALV 465
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ Y + + A +F K++ F WN
Sbjct: 466 NMYERTGSLGDARRVFEKIIERDVFAWN 493
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 35/240 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F ++ + +I + S++ + EA + M ++ PDR F ++ ++C +
Sbjct: 578 RNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTTVLEACTIV 634
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYS--------------------SCWC--- 172
++ +HS+A + GL S+ F+ LI+M+S +CW
Sbjct: 635 SAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVEAPTLACWNAML 694
Query: 173 -----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGF 226
I F+ M+ V P+ +T + V++A + A + R + + G
Sbjct: 695 GGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGARTFASMGTDYGV 754
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+E L+D + + A+D M ++ + A QG V R S A +
Sbjct: 755 GHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQGDVRRGSAAAR 814
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 52/277 (18%)
Query: 37 QYQAHFCLVSLEKCSTMREL----KQIHAQMLRTSLF------------FDPCADYHVRL 80
+ + F S+ T+ EL KQIH ++ L + C L
Sbjct: 205 EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDAL 264
Query: 81 -VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
F S+ T ++++ GY +A + M + G+ P F F + +C+D+
Sbjct: 265 QTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLG 324
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD--------- 177
+ KQ+H +K G S ++ L++MY+ C L +PD
Sbjct: 325 AAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG 384
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+A+ ++ RME+E + PN +T+ +VL A + L K++H + GF
Sbjct: 385 GYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL 444
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V + + L Y KC + +F +M + WN
Sbjct: 445 EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWN 481
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 45/247 (18%)
Query: 52 TMRELKQIHAQMLRTSL-----------FFDPCADY-HVRLVFSQISNPTIYTCNSIVRG 99
++++ K +HAQ++++S + C + VF +I N + + N I+ G
Sbjct: 21 SLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80
Query: 100 YTNKNLHHEAFL--FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
Y+ + + + M + P+ F +F + + D + H+ AIK
Sbjct: 81 YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSC 140
Query: 155 SDSFLHNTLINMY--------------------SSCWCL--------DQPDEAIKIFYRM 186
D F+ ++L+NMY S W EA+ +F M
Sbjct: 141 RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLM 200
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E N +VL+A + K++H ++G S V + L+ Y KC +
Sbjct: 201 RREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSL 260
Query: 247 SRAWDLF 253
A F
Sbjct: 261 DDALQTF 267
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
K LH+Q IK +S ++ N+L+N+Y+ C L +
Sbjct: 26 KALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQH 84
Query: 177 -----DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
+++F RM EN PNA T V TA + D + H + V
Sbjct: 85 GPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVF 144
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQGLVGRHSTAHQISGP 290
+ ++LM+ YCK A +F M P N WA M + Q L ++
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTM--PERNSVSWATMISGYASQKLAAEALGLFRLMRR 202
Query: 291 CPKKAHKLFFFSMLKKVHVP 310
+ ++ F S+L + +P
Sbjct: 203 EEEGENEFVFTSVLSALTLP 222
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQ 84
H CL L C +R L QIH ++ + D CA Y RL+
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC- 64
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYVEK- 142
P + N++VRGY+ + H + + EM+ +G + PD F F + K+ + +
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
Q+H QA+K GL S F+ TLI MY C C++ A K+F M +PN V
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEF---ARKVFDEMH----QPNLVAWNA 177
Query: 201 VLTARARARDLRTVKRV 217
V+TA R D+ + +
Sbjct: 178 VITACFRGNDVAGAREI 194
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 41/170 (24%)
Query: 130 SLFKSCADIYVEKQLHSQAIKFGLASDS-------------------------------- 157
SL SC ++ Q+H IK+G+ +DS
Sbjct: 10 SLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPD 69
Query: 158 -FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVK 215
F+ NTL+ YS D+P ++ +F M + V P++ + V+ A R LRT
Sbjct: 70 AFMFNTLVRGYSES---DEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++H + G SH+ + TTL+ Y C V A +F +M L WN
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWN 176
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 45/221 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
+ +FS++ + + ++++ G + +E+FL++ E+ G+ P+ + +C
Sbjct: 222 AKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQ 281
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------------CL----- 173
K LH K G + ++N LI+MYS C C+
Sbjct: 282 SGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTS 341
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR-------TVKRVH 218
Q +EA+++F M V P+ ++ +++L A + A + +KRV+
Sbjct: 342 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 401
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
E +E ++D Y + + +A+D +M P
Sbjct: 402 HIEPE------IEHYGCMVDLYGRSGKLQKAYDFICQMPIP 436
>gi|302796687|ref|XP_002980105.1| hypothetical protein SELMODRAFT_111767 [Selaginella moellendorffii]
gi|300152332|gb|EFJ18975.1| hypothetical protein SELMODRAFT_111767 [Selaginella moellendorffii]
Length = 696
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 99/249 (39%), Gaps = 44/249 (17%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHA++L + L + C R F ++ + + N+++ Y
Sbjct: 30 KQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQH 89
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+A Y ++G PD F SL +C D+ + LH + SD +
Sbjct: 90 ECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRLLHEHFLGTNFVSDQIVC 149
Query: 161 NTLINMYSSCWCLD----------QPDE------------------AIKIFYRMEIENVK 192
N LI+MYS C LD QPD A + +M E ++
Sbjct: 150 NGLISMYSDCGSLDDATAVFEWSFQPDVCTWTTVIAAYTRHGKLECAFATWRKMHQEGLR 209
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N +T + VL A + L T K VH+ SG + ++ +L+ Y KC + A D+
Sbjct: 210 SNEITFLTVLDACSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSSLGDARDV 269
Query: 253 FVKMLFPWN 261
F +M + N
Sbjct: 270 FDRMRYRRN 278
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 28/209 (13%)
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA 154
S++ Y L EA YH + ++G+ D +F S+ C + +HS+ + GL
Sbjct: 386 SVIGAYVQHGLKREATELYHHLDLEGMEVDENVFASVLGFCDSATQVRDVHSRILASGLE 445
Query: 155 SDSFLHNTLINMYSSCWCLDQPD-------------------------EAIKIFYRMEIE 189
N ++ Y D+ EAIK F M +E
Sbjct: 446 QRMVAANAVMTAYGKAGHPDEAREVFLGISRPSVISWSALIAAYGQHWEAIKTFELMNLE 505
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
VKPNA TL +VL A A +R+H V + + + Y KC V+ A
Sbjct: 506 GVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYAQNTTVLNAAASLYAKCSRVADA 565
Query: 250 WDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
+F + P + W A+ + QGL
Sbjct: 566 SRVFSSI--PCKDAVSWNAIVSAYAKQGL 592
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M++E V+ + +TL+N ++A A D K++H + SG + V L +L+ Y KC
Sbjct: 1 MDLEGVQGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60
Query: 246 VSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLK 305
V A + F +M P + W TV Q H+ C K+A +L+ +S L+
Sbjct: 61 VEEARNAFDRM--PERDLISWNAMITVYAQ---------HE----CGKQAIQLYAYSRLE 105
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 52/265 (19%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQIS- 86
L L+ CS++ L K +H L + L + C+ R VF ++
Sbjct: 216 LTVLDACSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSSLGDARDVFDRMRY 275
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
+ T ++V G+ EM+++G+ P F L C + V
Sbjct: 276 RRNVITWTAMVAGHAQCEDLAGGIYLCREMMLEGVRPQPVTFAGLLDGCRGREALAVGAS 335
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+H G+ SDS ++N L+NMYS L+
Sbjct: 336 IHGYVRLGGMESDSAVNNALVNMYSKSGGLEDAVKVFNDQRQDLKTSSWASVIGAYVQHG 395
Query: 177 --DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
EA ++++ +++E ++ + +VL A +R VH + SG +
Sbjct: 396 LKREATELYHHLDLEGMEVDENVFASVLGFCDSATQVRD---VHSRILASGLEQRMVAAN 452
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFP 259
+M AY K A ++F+ + P
Sbjct: 453 AVMTAYGKAGHPDEAREVFLGISRP 477
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
VFS I + N+IV Y + L +A +M V+G +PD F ++ SC+
Sbjct: 568 VFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCS 623
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR +F + + + N+I+ G L+ E EM L PD F S L
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--- 171
DI K++H +I+ GL +D ++ ++LI+MY+ C W
Sbjct: 252 NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSI 311
Query: 172 ---CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
C+ DE ++ F +M + +KP + + +++ A A L K++H + +GF
Sbjct: 312 IAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGF 371
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ + ++L+D Y KC + A +F +M
Sbjct: 372 DENIFIASSLVDMYAKCGNIRTAKQIFDRM 401
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 67/249 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F+ I P S++R YT+ L H++ + M+ GL PD +FPS+ KSCA D
Sbjct: 62 LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + LH I+ GL D + N L+NMYS L++
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181
Query: 176 -------PDEAIKIFYRMEIEN-------------------------------VKPNAVT 197
D KIF M ++ +KP++ T
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
L +VL A D+ K +H C G + + + ++L+D Y KC V+ + +F +
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT 301
Query: 258 ----FPWNN 262
WN+
Sbjct: 302 ERDGISWNS 310
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV---------------FSQISNP 88
L+ C R L +QIHA++L+ FF +LV F ++
Sbjct: 86 LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR 145
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+++ +IV +A L + EM G+ PD F+ P++ K+C I + K +H
Sbjct: 146 NVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVH 205
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+K G + F+ ++L++MY C L+
Sbjct: 206 GYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQ 265
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +FY M +E ++P VT+ + L+A A L K+ H + L ++++
Sbjct: 266 EAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSII 325
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ Y K + A +F +ML WN
Sbjct: 326 NFYSKVGLIEDAELVFSRMLEKDVVTWN 353
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 37/233 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF + + T NS++ GY L+ EA +++M V+G+ P R S + A
Sbjct: 237 RKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANL 296
Query: 137 DIYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
D +E KQ H+ AI L D+ L +++IN YS ++
Sbjct: 297 DALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLI 356
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q +A+ + + M EN++ ++VTL ++L+A A +++ K H
Sbjct: 357 SSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLE 416
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQG 276
S V + +++D Y KC+ + A +F + L WN A A VG G
Sbjct: 417 SDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTL--LAAYAQVGLSG 467
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 6/178 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSC 135
R VF + + N+++ Y L EA +++M + P+ + S+ F
Sbjct: 439 RKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRN 498
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ K + SQ G + TLI+ + EAI F +M+ ++P+
Sbjct: 499 GQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGF---GYEAILFFQKMQEAGIRPSI 555
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
++ +VL A L + +H + F V + T+L+D Y KC + A +F
Sbjct: 556 ASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVF 613
>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
Length = 711
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 119/279 (42%), Gaps = 55/279 (19%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQML-----RTSLFFDPCADYHVRL----------VFS 83
+A L+ L+ + E++++HA +L R+++ + R+ VF
Sbjct: 59 EAVALLLRLQSAPALTEVRRLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFD 118
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADI-YVE 141
+ + N++++G + EA +Y +M+ G ++ DRF +P + K+CA + VE
Sbjct: 119 GMPTRNSFAWNAVIKGLVDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVE 178
Query: 142 KQLHSQA-----IKFGLA-SDSFLHNTLINMYSSCWCLDQPD------------------ 177
+ Q I G+A + F+ L++M++ C CL +
Sbjct: 179 QGRKVQENVETDIARGIAKGNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMI 238
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
E + + RM+ E +P+++ V+ A + ++LRT +H + G
Sbjct: 239 GGAVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVG 298
Query: 228 SHVELKTTLMDAYCKCKFVSRA----WDLFVKMLFPWNN 262
+ + L+D YCKC + A W + K +F W+
Sbjct: 299 DDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWST 337
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 33/209 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F + + + +++ G E M +G PD +F ++ +C
Sbjct: 218 EARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACG 277
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC----------WCLDQPD------ 177
++ LH A+K G+ D + N L++MY C W +D D
Sbjct: 278 KVKELRTGMALHGYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWST 337
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
++ +F M +KPN+ T+ ++L + + R LR K +H C
Sbjct: 338 IIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASILPSISELRLLRYGKEIH-CFSLRN 396
Query: 226 FWSHVE-LKTTLMDAYCKCKFVSRAWDLF 253
H E L + L+D YC+ ++ A +F
Sbjct: 397 RLEHSEFLASALIDFYCRQGYIRDAQIVF 425
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 34/178 (19%)
Query: 60 HAQMLRTSLFFDPCADYHVR---LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
H++ L ++L C ++R +VF + NS++RGY A +
Sbjct: 400 HSEFLASALIDFYCRQGYIRDAQIVFEFKPKNDLVVLNSMIRGYVVNKDSESALRLLRAL 459
Query: 117 IVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ +GL PD S+ C + + K+LH+ AI+ ++S + N L +MY C CL
Sbjct: 460 LKEGLRPDHVTVVSVLPLCNQPSRLLQGKELHAYAIRHNISSCFSVTNALTDMYCKCGCL 519
Query: 174 D----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+ D+A +F M+ + V P+ VT V +L+
Sbjct: 520 EIANKIFLLMTERNTVTYNTLISSLGKHGHADQAFILFDLMKRDGVSPDKVTFVALLS 577
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFD----------------PCADYHVRLVFSQISNPTIY 91
E+ ++ E++Q HA ML+T LF D P + + ++I +P +
Sbjct: 17 ERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGF 76
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
T NS++R Y N + A + EM++ + PD++ F + K+CA +Q+H
Sbjct: 77 THNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 136
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+K L +D F+ NTLIN+Y + A K+ RM + +AV+ ++L+A
Sbjct: 137 MKSDLVTDVFVENTLINVYGRSGYFEI---ARKVLDRMPVR----DAVSWNSLLSAYL-- 187
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
D V+ DE +VE ++ Y V A ++F VK + WN
Sbjct: 188 -DKGLVEEARALFDEME-ERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWN 242
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 26/271 (9%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNIN----SQYQAHFCLVSLEKCSTMREL 56
+ +P H + A ++ ++P I L + +Y F L + E
Sbjct: 70 IESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEG 129
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+QIH +++ L D + + R V ++ + NS++ Y +K
Sbjct: 130 RQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDK 189
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
L EA + EM + + FM + + S +K D N +
Sbjct: 190 GLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVK-----DVVSWNAM 244
Query: 164 INMYSSCWCLDQPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+ Y+ C + E +++F M ++ +P+ TLVNVL+A A L + VH +D
Sbjct: 245 VTAYAHVGCYN---EVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYID 301
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ G + T L+D Y KC + +A ++F
Sbjct: 302 KHGIEIEGFVATALVDMYSKCGKIDKALEVF 332
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
R VF + + + N++V Y + ++E ++ M+ PD F ++ +C
Sbjct: 225 EAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSAC 284
Query: 136 ADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE-------------- 178
A + Q +H K G+ + F+ L++MYS C +D+ E
Sbjct: 285 ASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWN 344
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A++IF M E KPN +T + VL+A
Sbjct: 345 SIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSA 384
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 124/312 (39%), Gaps = 49/312 (15%)
Query: 4 PLPLH--HQTRTPALSSDNS--PLINLDNINNNNINSQYQAHFCLVSLEKCSTMR-ELKQ 58
PL LH HQ +T +S +N P + L N I AH C + L
Sbjct: 99 PLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH--------CEVFKLGLDN 150
Query: 59 IHAQMLRTSLFFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
H + + C + V R VF +I+ + + NS++ GY EA + +
Sbjct: 151 DHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLR 210
Query: 118 VQ-GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ G PD S+ +C D+ + + + ++ G+ +S++ + LI+MYS C L
Sbjct: 211 EESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGEL 270
Query: 174 ----------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
DEAI +F+ M+ V PN VTL VL+A
Sbjct: 271 VSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQ 265
A L K++ + G + + T L+D Y KC + A +F M P N
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM--PRKNDAS 388
Query: 266 W-AMSATVGPQG 276
W AM + + G
Sbjct: 389 WNAMISALASHG 400
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 127/287 (44%), Gaps = 54/287 (18%)
Query: 33 NINSQYQAHFCLVSL-EKCSTMRELKQIHAQ-----------MLRTSLFFDPCADY-HVR 79
N N+ + F L+SL ++C + + L+QIH Q +L S+ D+ +
Sbjct: 13 NTNTNHSPIFLLLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSI---SLKDFTYST 69
Query: 80 LVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFL-FYHEMIVQGLIPDRFMFPSLFKSCA- 136
L+FS I+ +P Y N ++R T + L YH+M + P+ F FP +F +CA
Sbjct: 70 LIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACAN 129
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC-- 172
+I + + H + K GL +D N+++ MY C W
Sbjct: 130 LEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSL 189
Query: 173 ------LDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
L EA+++F R+ E+ +P+ ++LV+VL A DL + V V E G
Sbjct: 190 LSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERG 249
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW--AMSA 270
+ + + L+ Y KC + + +F M P ++ W A+SA
Sbjct: 250 MKVNSYIGSALISMYSKCGELVSSRRIFDGM--PSRDFITWNAAISA 294
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F + + T N+ + Y + EA +H M G+ P++ ++ +CA I
Sbjct: 274 RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASI 333
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ KQ+ A GL D F+ LI+MY+ C L+
Sbjct: 334 GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMI 393
Query: 175 -------QPDEAIKIFYRMEIE--NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES- 224
+ EA+ +F RM E + +PN +T V++L+A A + R+ +
Sbjct: 394 SALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLF 453
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +E + ++D + + AWD+ KM
Sbjct: 454 GLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF ++S + +++ GY L EA Y +M G++P ++ S+ SC
Sbjct: 96 ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155
Query: 136 ADIYVEKQL-HSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP---------- 176
A+++ + +L H+Q K G S+ F+ N +I +Y C D P
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTL 215
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ A++IF M+ + P+ VT+ ++L A A DL+ ++H + ++G
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
S ++ +L+D Y KC V A +F
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIF 302
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS---------LFFDPCADY----HVRLVFSQISNPTI 90
L C+ RE+ +QIH+ ++T + D + Y R V + +
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
+ S++ GY +A + EM G+ PD S CA I +Q +H++
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
G + D + N L+N+Y+ C + + +EA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F RM+ VK N T V+ L+A A +++ K++H V ++G E+ L+
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC A F +M
Sbjct: 592 YGKCGSFEDAKMEFSEM 608
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 112/267 (41%), Gaps = 51/267 (19%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD------------PCADYHVRLVFSQISNPT-I 90
L C+++ +L+ Q+H+ + + + D C D LV S+ T +
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV 310
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
N ++ + N ++F + +M G+ P++F +P + ++C +I + +Q+HS
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSL 370
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
++K G SD ++ LI+MYS L++ +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDA 430
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F M+ + P+ + L + ++ A +R ++H + SG+ V + L++
Sbjct: 431 LAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNL 490
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNN 262
Y +C + A+ F ++ WN
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNG 517
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADI 138
F +I + T N +V G+ LH EA + M G+ + F F S + A+I
Sbjct: 504 FEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEI 563
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------------- 177
KQ+H++ IK G + ++ + N LI++Y C +
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSC 623
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F +M+ E +KPN VT + VL A
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAA 657
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 119/305 (39%), Gaps = 91/305 (29%)
Query: 52 TMRELKQIHAQMLRTSLF---------------FDPCADYHVRLVFSQISNPTIYTCNSI 96
T++ELKQIH Q++ L +P + + Q + PT++ NS+
Sbjct: 21 TLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSM 80
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVEK--QLHSQAIKFG 152
+R Y+ H++F FY++++ + PD + F L ++CA E +H IK G
Sbjct: 81 IRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACEAGPAVHGALIKHG 140
Query: 153 LASDSFLHNTLI----------------------------NMYSSCW-CLD--------- 174
D + + LI M S+C C D
Sbjct: 141 FEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFD 200
Query: 175 ---------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
Q EA+ +F M+++ VK N V++++V+TA L
Sbjct: 201 SMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQ 260
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA----WDLFVKMLFPW--------- 260
K H ++++ V L T L+D Y KC V RA W++ K ++ W
Sbjct: 261 GKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAM 320
Query: 261 NNYGQ 265
N YGQ
Sbjct: 321 NGYGQ 325
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 36/223 (16%)
Query: 72 PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
PC R VF +I +P + +S+V Y+N L A +H M +G+ + F P +
Sbjct: 53 PCC---ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVV 109
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
K D + Q+H+ A+ G SD F+ N L+ MY +
Sbjct: 110 LKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS 169
Query: 174 -----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
DQ +AI++F M ++P V+ A +R++ ++VH V
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 229
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
G+ V L+D Y K V A +F KM + WN
Sbjct: 230 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWN 272
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 30 NNNNINSQYQAHFCLVSL---EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+ NI++ Q H +V + + T L ++ +M R + ++F ++
Sbjct: 214 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI---------ASVIFEKMP 264
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + + N+++ G H A +M GL+P+ FM S+ K+CA + +Q
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 324
Query: 144 LHSQAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQ 175
+H IK SD ++ L++MY S C +
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 384
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA IFY + E + N TL VL + A ++VH ++ GF +
Sbjct: 385 HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNG 444
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D+Y KC +S A +F
Sbjct: 445 LIDSYWKCSCLSDAIRVF 462
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 50/263 (19%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTI 90
SLE S R Q+HA + FD C +R VF + S+ I
Sbjct: 415 ASLEAASATR---QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIR-VFEECSSGDI 470
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
S++ + + A + EM+ +GL PD F+ SL +CA + KQ+H+
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK SD+F N L+ Y+ C ++ + A
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMD 238
+++F RM E + PN +T+ +VL A A + KR + E G E + ++D
Sbjct: 591 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 650
Query: 239 AYCKCKFVSRAWDLFVKMLFPWN 261
+ + A +L M F N
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQAN 673
>gi|302808039|ref|XP_002985714.1| hypothetical protein SELMODRAFT_459 [Selaginella moellendorffii]
gi|300146623|gb|EFJ13292.1| hypothetical protein SELMODRAFT_459 [Selaginella moellendorffii]
Length = 659
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 128/319 (40%), Gaps = 52/319 (16%)
Query: 4 PLPLHHQTRTPALSSDNSPLINLDN--INNNNINSQYQAHFCLVSLEKCSTMRELKQIHA 61
PL + H + +D + +NL + + + H C L T+ I+
Sbjct: 220 PLAMFHAMMLEGIKADATTFVNLASGLAAPSPLRDGELLHRCARELGGGRTL-----IYD 274
Query: 62 QMLRTSL--FFDPCADY-HVRLVFSQ-----ISNPTIYTCNSIVRGYTNKNLHHEAFLFY 113
+L TSL F C H R +F + NP ++ N+I+ + +A L +
Sbjct: 275 AVLATSLVTMFAKCGSVAHAREIFRENFHCHERNPVVW--NAIIAALVQNHDFSDALLLF 332
Query: 114 HEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
M +QG+ D F S +C D + LH + L +D+ + L+N YS
Sbjct: 333 RTMQLQGVPSDAITFVSTIDACTALEDFPTGRALHGIISESSLETDTIVATALVNFYSKS 392
Query: 171 WCLD----------QPD------------------EAIKIFY-RMEIENVKPNAVTLVNV 201
LD +PD A++IF+ RME+ KP+ +T +
Sbjct: 393 RRLDAATAAFQRIHEPDLVAWNVLIAAHVDNANSSTALEIFFHRMEL---KPDRITFITT 449
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
L A A L +R+H+ + + G S V + + L+D Y KC + A+ +F M N
Sbjct: 450 LAACVTASALPLGRRLHEQIRQRGLHSDVVVASALVDMYSKCGSLEEAYQVFSTMAGRRN 509
Query: 262 NYGQWAMSATVGPQGLVGR 280
+ A+ A G GR
Sbjct: 510 SATWNALIAGHAQHGFSGR 528
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 42/210 (20%)
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+YT +++ Y N AF +M G+ P+R + +C I++ ++H
Sbjct: 2 AMYT--ALIGAYARSNDPLAAFTLLRQMQADGIPPNRITLVEILSACTALHSIHLGDRIH 59
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
I GL DS L L+ ++ C LD+
Sbjct: 60 QWIIDLGLHRDSVLGTALLTTFARCGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSH 119
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGF-WSHVELKTT 235
+A+ +F RM+++ + PNA+TLV VL+ + + D R VH ES S V + +
Sbjct: 120 DALDLFRRMQLDGIHPNAITLVAVLSIFQESSTDARA---VHSLAMESAMDASTVAVGNS 176
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+++ Y +C+ + RA F ++ + WN
Sbjct: 177 IVNMYARCRDLDRARLAFARIQSKNVVSWN 206
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 42/231 (18%)
Query: 62 QMLRTSLF--FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118
+L T+L F C + F+ I+ + N+I+ ++ N H+A + M +
Sbjct: 71 SVLGTALLTTFARCGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSHDALDLFRRMQL 130
Query: 119 QGLIPDRFMFPSLF----KSCADIYVEKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCL 173
G+ P+ ++ +S D + +HS A++ + AS + N+++NMY+ C L
Sbjct: 131 DGIHPNAITLVAVLSIFQESSTD---ARAVHSLAMESAMDASTVAVGNSIVNMYARCRDL 187
Query: 174 DQPDEA---------------------------IKIFYRMEIENVKPNAVTLVNVLTARA 206
D+ A + +F+ M +E +K +A T VN+ + A
Sbjct: 188 DRARLAFARIQSKNVVSWNVMISAHSQLDRLHPLAMFHAMMLEGIKADATTFVNLASGLA 247
Query: 207 RARDLRTVKRVHKCVDESG----FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
LR + +H+C E G L T+L+ + KC V+ A ++F
Sbjct: 248 APSPLRDGELLHRCARELGGGRTLIYDAVLATSLVTMFAKCGSVAHAREIF 298
>gi|357461849|ref|XP_003601206.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
gi|355490254|gb|AES71457.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
Length = 553
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 44/254 (17%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDP-CADYHVRL------------VFSQISNPTIYTCNSI 96
C ++ +KQ+HA +L+T L DP A +RL VF + S +++ NS+
Sbjct: 16 CKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHVFDKTSTRSVFLWNSM 75
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGL 153
+R + A + M+V + PD + + ++CAD + + + +H A+ GL
Sbjct: 76 IRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGSAVSVGL 135
Query: 154 ASDSFLHNTLINMYSSCWCLD----------QPDE------------------AIKIFYR 185
D + L++ YS + +PD I++F
Sbjct: 136 GLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGIQMFSS 195
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M + KP+ TL +L A + L + +H +SG S + + L+ Y +CK
Sbjct: 196 MRLAGKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDCHVGSLLVSMYSRCKC 255
Query: 246 VSRAWDLFVKMLFP 259
+ A+ +F + P
Sbjct: 256 IDSAYRVFCGIFNP 269
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 44/246 (17%)
Query: 56 LKQIHAQMLRTSLFFDP--CAD-----------YHVRLVFSQISNPTIYTCNSIVRGYTN 102
L+ +H + L DP C+ + R VF I P + NS++ Y
Sbjct: 123 LRVVHGSAVSVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGG 182
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFL 159
+ + M + G PD F L AD + + ++LH + K GL SD +
Sbjct: 183 SGMWEIGIQMFSSMRLAGKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDCHV 242
Query: 160 HNTLINMYSSCWCLDQ----------PD------------------EAIKIFYRMEIENV 191
+ L++MYS C C+D PD +A+ F ++ +++
Sbjct: 243 GSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQCGEYQKALLFFRKLNMKSK 302
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
K ++V + VL + + ++ +H V G S V++ + L+D Y KC F+
Sbjct: 303 KLDSVLIATVLASITQMANVLPGCEIHGYVLRHGLESDVKVSSALIDMYSKCGFLHLGTC 362
Query: 252 LFVKML 257
+F ML
Sbjct: 363 VFRIML 368
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 58 QIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKN 104
+IH +LR L + C H+ VF + I + NS++ Y
Sbjct: 327 EIHGYVLRHGLESDVKVSSALIDMYSKCGFLHLGTCVFRIMLERNIISYNSMILAYGLHG 386
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+AF + EM+ +GL+PD F +L +C
Sbjct: 387 CASQAFTMFDEMLQKGLVPDEGTFSALLSAC 417
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 51/258 (19%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIY 91
NN++ A L C+ + EL QIHA +LRT++ + +P+ +
Sbjct: 189 NNVD---HARIVATLLMNCTNVLELYQIHAHVLRTNMLEN---------------HPSSF 230
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQA 148
N I+R YT + A Y M+ G++PD + P +FK+ + Y + QLHS A
Sbjct: 231 YWNIIIRSYTRLEVPRIALFVYIAMLQAGILPDCYTLPIVFKALSLAYAFDLGLQLHSVA 290
Query: 149 IKFGLASDSFLHNTLINMYS-------SCWCLDQ---------------------PDEAI 180
I+ G D + + LI++YS +C +Q EA+
Sbjct: 291 IRLGFEFDQYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAV 350
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW--SHVELKTTLMD 238
+F ++ ++P+ T+V+V +A +L ++HK V + S++ + +L+D
Sbjct: 351 NMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLID 410
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC + A +F M
Sbjct: 411 MYGKCGRMDLAMKVFSNM 428
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF ++S + +++ GY L EA Y +M G++P ++ S+ SC
Sbjct: 96 ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155
Query: 136 ADIYVEKQL-HSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQP---------- 176
A+++ + +L H+Q K G S+ F+ N +I +Y C D P
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTL 215
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ A++IF M+ + P+ VT+ ++L A A DL+ ++H + ++G
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
S ++ +L+D Y KC V A +F
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIF 302
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS---------LFFDPCADY----HVRLVFSQISNPTI 90
L C+ RE+ +QIH+ ++T + D + Y R V + +
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
+ S++ GY +A + EM G+ PD S CA I +Q +H++
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
G + D + N L+N+Y+ C + + +EA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K+F RM+ VK N T V+ L+A A +++ K++H V ++G E+ L+
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC A F +M
Sbjct: 592 YGKCGSFEDAKMEFSEM 608
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 112/267 (41%), Gaps = 51/267 (19%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD------------PCADYHVRLVFSQISNPT-I 90
L C+++ +L+ Q+H+ + + + D C D LV S+ T +
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNV 310
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
N ++ + N ++F + +M G+ P++F +P + ++C +I + +Q+HS
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSL 370
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
++K G SD ++ LI+MYS L++ +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDA 430
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F M+ + P+ + L + ++ A +R ++H + SG+ V + L++
Sbjct: 431 LAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNL 490
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNN 262
Y +C + A+ F ++ WN
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNG 517
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADI 138
F +I + T N +V G+ LH EA + M G+ + F F S + A+I
Sbjct: 504 FEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEI 563
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------------- 177
KQ+H++ IK G + ++ + N LI++Y C +
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSC 623
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F +M+ E +KPN VT + VL A
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAA 657
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DI 138
F+ ++ P + N ++RG+ + +L +A Y M+ G PDRF FP + K CA +
Sbjct: 77 FAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGAL 136
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE-------------------- 178
+ H+ IK GL +D + N+L+ +Y+ + +
Sbjct: 137 GEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGY 196
Query: 179 --------AIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
A+ F M + V ++V ++ L A L + +H G
Sbjct: 197 VSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQD 256
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V++ T+L+D YCKC V A ++F KM + WN
Sbjct: 257 VKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWN 292
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM--IVQGLIPDRFMFPSLFKSCAD- 137
VF + I + N++V GY + + A + EM +Q + +L C +
Sbjct: 177 VFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLES 236
Query: 138 -IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-CL-- 173
+ + +++H AI+ GL D + +L++MY C W C+
Sbjct: 237 ALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIG 296
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
++P +A F +M ++ + VT +N+LTA A+ + VH V F
Sbjct: 297 GYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLP 356
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
HV L+T L++ Y K V + +F K L WNN
Sbjct: 357 HVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNN 394
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCAD 137
+F QI++ T+ + N+++ Y ++ EA + E++ Q L PD F ++ F
Sbjct: 380 IFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGS 439
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
I KQ+HS +K G + + N +++MY+ C +
Sbjct: 440 IRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIG 499
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q A+++F M+ ++PN T V+VLTA
Sbjct: 500 YAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTA 534
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 39/204 (19%)
Query: 91 YTCNSIVRGYTNKNLHH---EAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVEKQ 143
+ N+++R + +H A F+ M+ ++P++F FP L K+CA + V Q
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQ 148
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQ-PDE-------------- 178
H+ A+KFG A+D ++ NTLI+MY SC+ D+ P E
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVR 207
Query: 179 ------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
A+ +F M+ V+ + VT++ VL A L + V + V+ G V L
Sbjct: 208 GGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+D KC V A +F M
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGM 291
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 74/279 (26%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI 90
N N N ++ H L + +++ +KQIHAQ+LRT I P
Sbjct: 9 NTNTNIKHINHL----LNQSNSISHVKQIHAQILRT------------------IHTPNS 46
Query: 91 YTCNSIVRGYTNKNLH-HEAFLFYHEMIVQ---GLIPDRFMFPSLFKSCA---DIYVEKQ 143
+T N +++ Y+ LH +A L Y +I + L PD+ +P + K+CA ++ KQ
Sbjct: 47 FTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQ 106
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENV----------- 191
+H+ +K G D+++ N+LI+ Y+SC L+ A K+F RM E NV
Sbjct: 107 VHAHVLKLGFELDTYICNSLIHFYASCGYLET---ARKVFDRMCEWRNVVSWNVMIDSYA 163
Query: 192 -------------------KPNAVTLVNVLTARARARDLRTVKRVH-----KCVDESGFW 227
+P+ T+ +V+ A L VH KC +
Sbjct: 164 KVGDYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKC--DKNVV 221
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNN 262
V + T L+D YCKC + A +F M + WN+
Sbjct: 222 CDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNS 260
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 112/254 (44%), Gaps = 70/254 (27%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ--GLIPDRFMFPSLFKSCADI 138
+ Q ++PT++ NS++R ++ + ++F F++ +I G+ PD + F L ++CA +
Sbjct: 38 ILDQCNDPTVFALNSMIRAHSKGSKPQKSFYFFNRIIHSHNGISPDNYTFNFLIRACAQL 97
Query: 139 YVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD-------- 177
++ +H IK+G D + + LI MY+ CL QPD
Sbjct: 98 LAKEIGLAVHGCVIKYGFGLDPHVQSGLIFMYAELGCLGFCRQVFDLIPQPDLVCQTAMV 157
Query: 178 -----------------------------------------EAIKIFYRMEIENVKPNAV 196
EA+ +F+ M++E+VK + V
Sbjct: 158 SACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQCGQSREALALFHLMQLEDVKVSEV 217
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++V+VL+A ++ L + H ++ + V L T L+D Y KC +++A ++F M
Sbjct: 218 SMVSVLSASSQLGALDNGRWAHAYIERNKIPVTVTLGTALVDMYAKCGDMNKAMEVFWAM 277
Query: 257 ----LFPWNN--YG 264
++ W++ YG
Sbjct: 278 KEKNVYTWSSAIYG 291
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 119/274 (43%), Gaps = 50/274 (18%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFD-------------- 71
+N N +N Y A LV L + +L KQ+H +++ L D
Sbjct: 893 VNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 952
Query: 72 PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
CA Y R VF+ + + + + NS++ +L E+ + +++ +GL PD F S+
Sbjct: 953 GCA-YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASV 1011
Query: 132 FKSCADIY----VEKQLHSQAIKFGLASDSFLHNTLINMYS------------------- 168
++C+ + + +Q+H A+K G +DSF+ TLI++YS
Sbjct: 1012 LRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLD 1071
Query: 169 -SCW--------CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+CW + +A+++F + K + +TL A L K++H
Sbjct: 1072 LACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHA 1131
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
++GF S + + + ++D Y KC + A +F
Sbjct: 1132 HAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVF 1165
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 22/201 (10%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
RL+F + + N +++GY L EAF + E GL PD F + ++
Sbjct: 781 ARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSE 840
Query: 138 I------YVEKQLHSQAIKFGLASDS---FLHNTLINMYSSC-WCLDQPDEAIKIFYRME 187
+ ++ Q+ + A K L+ D+ F N + S C W D AI+ F M
Sbjct: 841 VNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKL---SECLWAGDNWG-AIECFVNMN 896
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK--CKF 245
N+ +AVTL+ VL A A DL K+VH +SG S V + +L++ Y K C +
Sbjct: 897 GLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 956
Query: 246 VSRAWDLFVKM----LFPWNN 262
+R ++F M L WN+
Sbjct: 957 FAR--EVFNDMKHLDLISWNS 975
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 49/265 (18%)
Query: 41 HFCLVS-LEKCSTMRE----LKQIHAQMLRTSLFFDPCADYHVRLVFS------------ 83
HF L S L CS++ + +QIH L+T D + V+S
Sbjct: 1005 HFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLF 1064
Query: 84 QISNPTIYTC-NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-- 140
Q + C N+++ GY N +A + + G D+ + K+C + +
Sbjct: 1065 QNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLD 1124
Query: 141 -EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CL 173
KQ+H+ AIK G SD +++ +++MY C W C+
Sbjct: 1125 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 1184
Query: 174 DQ--PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
D D+A++I++RM V P+ T ++ A + L +++H V + S
Sbjct: 1185 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 1244
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM 256
+ T+L+D Y KC + A+ LF KM
Sbjct: 1245 VGTSLVDMYAKCGNIEDAYRLFKKM 1269
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 78/283 (27%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCA--------------DY--HVRLVFSQISNPTIYT 92
+CS ELKQIHA+ML+T L D A D+ + ++VF P +
Sbjct: 52 RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFL 111
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAI 149
N ++RG++ + + L Y M+ + + FPSL K+C+++ Q+H+Q
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQIT 171
Query: 150 KFGLASDSFLHNTLINMYSSCWC----------LDQPDE------------------AIK 181
K G +D + N+LIN Y++ + +PD A+
Sbjct: 172 KLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALT 231
Query: 182 IFYRM-----------------------------EIEN--VKPNAVTLVNVLTARARARD 210
+F +M E++N V+P+ V+L N L+A A+
Sbjct: 232 LFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 291
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K +H + ++ L L+D Y KC + A ++F
Sbjct: 292 LEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVF 334
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F ++ + +++ GY +H EA +HEM + PD + +CA +
Sbjct: 232 LFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 291
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+Q +HS K + DS L LI+MY+ C + +
Sbjct: 292 LEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISG 351
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI F M+ +KPN +T VLTA
Sbjct: 352 YAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTA 386
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 36/223 (16%)
Query: 72 PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
PC R VF +I +P + +S+V Y+N L A +H M +G+ + F P +
Sbjct: 53 PCC---ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVV 109
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
K D + Q+H+ A+ G SD F+ N L+ MY +
Sbjct: 110 LKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS 169
Query: 174 -----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
DQ +AI++F M ++P V+ A +R++ ++VH V
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
G+ V L+D Y K V A +F KM + WN
Sbjct: 230 RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWN 272
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 50/263 (19%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTI 90
SLE ST R Q+HA ++ FD C R VF + S+ I
Sbjct: 415 ASLEAASTTR---QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANR-VFEECSSGDI 470
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
C S++ + + A + EM+ +GL PD F+ SL +CA + KQ+H+
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK SD+F N L+ Y+ C ++ + A
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMD 238
+++F RM E + PN +T+ +VL A A + KR + E G E + ++D
Sbjct: 591 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 650
Query: 239 AYCKCKFVSRAWDLFVKMLFPWN 261
+ + A +L M F N
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQAN 673
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 43/258 (16%)
Query: 30 NNNNINSQYQAHFCLVSL---EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+ NI + Q H +V + + T L ++ +M R + ++F ++
Sbjct: 214 GSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI---------ASVIFEKMP 264
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + + N+++ G H A +M GL+P+ F S+ K+C+ + +Q
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQ 324
Query: 144 LHSQAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQ 175
+H IK SD ++ L++MY S C +
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+ +FY + E + N TL VL + A T ++VH + GF +
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNG 444
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D+Y KC +S A +F
Sbjct: 445 LIDSYWKCSCLSDANRVF 462
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 35/243 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF + + + CN+++ G ++ H EA ++E+ +GL +R ++ KS A
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416
Query: 138 IYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ +Q+H+ A+K G D+ + N LI+ Y C CL
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSM 476
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D + AIK+F M + ++P+ L ++L A A K+VH + + F
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
S L+ Y KC + A F + P W SA +G G A +
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSL--PERGVVSW--SAMIGGLAQHGHGKRALE 592
Query: 287 ISG 289
+ G
Sbjct: 593 LFG 595
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L++C ++L KQ+H ++++ + + C R VF + +
Sbjct: 35 LKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSG 94
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ N+++ GY +A + EM +G+ P+ + + K+CA + K++H+
Sbjct: 95 ASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHAC 154
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
GL SD + L+ MY C +++ EA
Sbjct: 155 IRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEA 214
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ +ME E KPNA+T V++L A A L+ VKRVH+ ++G V + T L+
Sbjct: 215 YRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQM 274
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y K + A +F +M + WN
Sbjct: 275 YAKSGSIDDARVVFDRMKVRDVVSWN 300
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 62/308 (20%)
Query: 37 QYQAHFCLVSLEKCSTMRELK---QIHAQMLRTSL------------FFDPCADYH-VRL 80
Q A ++ L+ C+++ LK ++HA + L + C + R
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F + N I + ++ Y EA+ +M +G P+ + S+ +CA
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ K++H A+ GL D + L+ MY+ +D
Sbjct: 246 LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGA 305
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ EA +F +M+ E KP+A+ +++L A A A L VK++H+ +SG
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL------VG 279
V + T L+ Y K + A +F +M + WN AM + + GL V
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWN-----AMISGLAQHGLGQDALEVF 420
Query: 280 RHSTAHQI 287
R TAH +
Sbjct: 421 RRMTAHGV 428
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
N EA + + +GLI D FM+ + K C D+ KQ+H IK + ++ +
Sbjct: 7 NTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM 66
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
N L+++Y C L + ++A+++F M E V+
Sbjct: 67 NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQ 126
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
PNA T + +L A A L+ K VH C+ G S V + T L+ Y KC ++ A +
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRI 186
Query: 253 FVKML 257
F ++
Sbjct: 187 FDNLM 191
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R+VF ++ + + N ++ + HEA+ + +M +G PD MF S+ +CA
Sbjct: 285 RVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASA 344
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
K++H A+ GL D + L++MYS +D
Sbjct: 345 GALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMI 404
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++F RM VKP+ VT V VL+A
Sbjct: 405 SGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSA 441
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 36/212 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F ++ + + +I++ +EAF Y +M+ G+ P+ F SL SC
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ +++HS + GL +D + N LI MY C C+
Sbjct: 296 LNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAG 355
Query: 177 ------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
DE ++ RM E V PN VT +++L A + L +++H + +
Sbjct: 356 YAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF S L+T + + Y KC + A +F KM
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKM 447
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 130/328 (39%), Gaps = 67/328 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
+E C+ +R K +H Q+ L F+ D V VF +++ +
Sbjct: 85 IEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDV 144
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
T +S++ Y N +AF + M + P+R F S+ K+C + + +++H+
Sbjct: 145 VTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTV 204
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
G+ +D + LI MYS C + + +EA
Sbjct: 205 VKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEA 264
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++ +M + PNAVT V++L + L +R+H + E G + V + L+
Sbjct: 265 FELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITM 324
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAH--------QI 287
YCKC + A + F +M + W+ AM A G + S +
Sbjct: 325 YCKCNCIQDARETFDRMSKRDVISWS-----AMIAGYAQSGYQDKESLDEVFQLLERMRR 379
Query: 288 SGPCPKKAHKLFFFSMLKKVHVPGVLIQ 315
G P +K+ F S+LK V G L Q
Sbjct: 380 EGVFP---NKVTFMSILKACSVHGALEQ 404
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 31/169 (18%)
Query: 119 QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS------ 169
+GL+ + + + + CA + K +H Q + GLA D +L N+LIN YS
Sbjct: 72 RGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVAS 131
Query: 170 --------------CWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
W + P +A F RM+ N++PN +T +++L A
Sbjct: 132 VEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNN 191
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L + +H V SG + V + T L+ Y KC +S A ++F KM
Sbjct: 192 YSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM 240
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 15/148 (10%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYT-----NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
R F ++S + + ++++ GY +K E F M +G+ P++ F S+
Sbjct: 334 ARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL 393
Query: 133 KSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
K+C + +Q+H++ K G SD L + NMY+ C + EA ++F +ME +
Sbjct: 394 KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSI---YEAEQVFSKMENK 450
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRV 217
NV V ++LT + DL + ++V
Sbjct: 451 NV----VAWASLLTMYIKCGDLTSAEKV 474
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 38/224 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKN--LHHEAFLFYHEMIVQG-LIPDRFMFPSLFK 133
+ +LVF +I NP NS++RG++ L +A +FY+ M+ PD + F L K
Sbjct: 450 YAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLK 509
Query: 134 SCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYS---------------------- 168
+C + E +++H I+FG D L LI Y+
Sbjct: 510 ACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVS 569
Query: 169 -----SCWC-LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
SC+C +EA+K++ +M I NV + TLV++L++ A L ++H+
Sbjct: 570 WNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAG 629
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
E ++ + L+D Y KC ++ A +F M +F WN+
Sbjct: 630 ERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNS 673
>gi|302785287|ref|XP_002974415.1| hypothetical protein SELMODRAFT_462 [Selaginella moellendorffii]
gi|300158013|gb|EFJ24637.1| hypothetical protein SELMODRAFT_462 [Selaginella moellendorffii]
Length = 659
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 128/319 (40%), Gaps = 52/319 (16%)
Query: 4 PLPLHHQTRTPALSSDNSPLINLDN--INNNNINSQYQAHFCLVSLEKCSTMRELKQIHA 61
PL + H + +D + +NL + + + H C L T+ I+
Sbjct: 220 PLAMFHAMMLEGIKADATTFVNLASGLAAPSPLRDGELLHRCARELGGGRTL-----IYD 274
Query: 62 QMLRTSL--FFDPCADY-HVRLVFSQ-----ISNPTIYTCNSIVRGYTNKNLHHEAFLFY 113
+L TSL F C H R +F + NP ++ N+I+ + +A L +
Sbjct: 275 AVLATSLVTMFAKCGSVAHARDIFHENFHCHERNPVVW--NAIIAALVQNHDFSDALLLF 332
Query: 114 HEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
M +QG+ D F S +C D + LH + L +D+ + L+N YS
Sbjct: 333 RTMQLQGVPSDAITFVSTIDACTALEDFSTGRALHGIISESSLETDTIVATALVNFYSKS 392
Query: 171 WCLD----------QPD------------------EAIKIFY-RMEIENVKPNAVTLVNV 201
LD +PD A++IF+ RME+ KP+ +T +
Sbjct: 393 RRLDAATAAFQRIPEPDLVAWNVLIAAHVDNADSSTALEIFFHRMEL---KPDRITFITT 449
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
L A A L +R+H+ + + G S V + + L+D Y KC + A+ +F M N
Sbjct: 450 LAACVTASALPLGRRLHEQIRQRGLHSDVIVASALVDMYSKCGSLEEAYKVFSTMAGRRN 509
Query: 262 NYGQWAMSATVGPQGLVGR 280
+ A+ A G GR
Sbjct: 510 SATWNALIAGHAQHGFSGR 528
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 42/210 (20%)
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+YT +++ Y N AF +M G+ P+R + +C I++ ++H
Sbjct: 2 AMYT--ALIGAYARSNDPSAAFTLLRQMQADGIPPNRITLVEILSACTALHSIHLGDRIH 59
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
I GL DS L L+ ++ LD+
Sbjct: 60 QWIIDLGLHRDSVLGTALLTTFARSGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSH 119
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGF-WSHVELKTT 235
EA+ +F RM+++ + PNA+TLV VL+ + + D R VH ES S V + +
Sbjct: 120 EALDLFRRMQLDGIHPNAITLVAVLSIFQESSTDARA---VHSLAMESAMDESSVAVGNS 176
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+++ Y +C+ + RA F ++ + WN
Sbjct: 177 IVNMYARCRDLDRARLAFARIQSKNVVSWN 206
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 39/212 (18%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF----K 133
+ F+ I+ + N+I+ ++ N HEA + M + G+ P+ ++ +
Sbjct: 90 AKAAFTAIARKDLIAWNAIITATSHSNRSHEALDLFRRMQLDGIHPNAITLVAVLSIFQE 149
Query: 134 SCADIYVEKQLHSQAIKFGLASDSF-LHNTLINMYSSCWCLDQPDEA------------- 179
S D + +HS A++ + S + N+++NMY+ C LD+ A
Sbjct: 150 SSTD---ARAVHSLAMESAMDESSVAVGNSIVNMYARCRDLDRARLAFARIQSKNVVSWN 206
Query: 180 --------------IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ +F+ M +E +K +A T VN+ + A LR + +H+C E G
Sbjct: 207 VMISAHSQLDRLHPLAMFHAMMLEGIKADATTFVNLASGLAAPSPLRDGELLHRCARELG 266
Query: 226 ----FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L T+L+ + KC V+ A D+F
Sbjct: 267 GGRTLIYDAVLATSLVTMFAKCGSVAHARDIF 298
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 130/310 (41%), Gaps = 67/310 (21%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIH 60
M A PL+ PA+ + ++++ N + C L+K ++ LK++H
Sbjct: 1 MTAINPLYRHF--PAVKQLQTLVLSIQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLH 58
Query: 61 AQM-------------LRTSLFFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
+++ ++ + C + + R +F +I + N ++R Y N +L+
Sbjct: 59 SKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLY 118
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTL 163
+A L + M G+ PD + +P + K+ + D++V Q+H+ ++ GL + F+ N L
Sbjct: 119 SDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGL 178
Query: 164 INMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNA 195
I+MY C CL Q D+A+++ ME+ +KP+A
Sbjct: 179 ISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDA 238
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK---------TTLMDAYCKCKFV 246
T+ ++L A + C+D F + +K ++ Y
Sbjct: 239 GTMASLLPAVT-----------NTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMP 287
Query: 247 SRAWDLFVKM 256
+ A D+F++M
Sbjct: 288 AEAVDIFLQM 297
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 24/257 (9%)
Query: 20 NSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFD----- 71
+ L+ N+ + I+ + + C+ L+ S +L QIHA ++R L +
Sbjct: 119 SDALLVFKNMAGHGIDPDHYTYPCV--LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGN 176
Query: 72 ---------PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
C R V Q+ + + NS+V G +A EM + GL
Sbjct: 177 GLISMYGKCGCLVEACR-VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLK 235
Query: 123 PDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIK 181
PD SL + + ++ + + LA+ S + N +I +Y + P EA+
Sbjct: 236 PDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNN---SMPAEAVD 292
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
IF +ME V P+A+++ +VL A L +R+H+ V ++ L+ L+D Y
Sbjct: 293 IFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYA 352
Query: 242 KCKFVSRAWDLFVKMLF 258
KC + A ++F +M F
Sbjct: 353 KCGCLEYAREVFDQMKF 369
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 109/259 (42%), Gaps = 35/259 (13%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
V+ +F +++N ++ + N ++ Y N ++ EA + +M + PD S+ +C D
Sbjct: 259 VKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGD 318
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
+ + +++H ++ L + L N LI+MY+ C CL+ E
Sbjct: 319 LSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSM 378
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESG 225
A+ +F RM+ + P+++ V+VL+A + A L + K + +E
Sbjct: 379 ISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECK 438
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN--YGQWAMSATVGPQGLVGRHST 283
+E ++D + V A+ +M N +G + V ++G +
Sbjct: 439 IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLA- 497
Query: 284 AHQISGPCPKKAHKLFFFS 302
A Q+ CP+++ S
Sbjct: 498 ADQLFQLCPEQSGYYVLLS 516
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 108/271 (39%), Gaps = 55/271 (20%)
Query: 47 LEKCSTMRELKQIHAQMLR------TSLFFDPCADY-------------HVRLVFSQISN 87
L++C ++R L Q+HA +L S+ A Y H R +F ++ +
Sbjct: 10 LQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPD 69
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---L 144
P + NS++R Y+N EA + +++ +G++P+ F P + K+C+ +
Sbjct: 70 PDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALAT 129
Query: 145 HSQAIKFGLASDSFLHNTLI-----------------------------NMYSSCWCLDQ 175
H AIK G F+ N L+ M C +
Sbjct: 130 HGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGE 189
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA +F M + V + T V++L ++ +L + VH + SG + L
Sbjct: 190 TSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNA 249
Query: 236 LMDAYCKCK---FVSRAWDLF-VKMLFPWNN 262
L+D Y KC R +D+ +K + W +
Sbjct: 250 LVDMYGKCGDLWMAHRCFDVMPIKNVVSWTS 280
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E + ++ RM+ + P+ VTL VL+ + DL + + +H + +S V + +L+
Sbjct: 324 ETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLI 383
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
D Y +C V + LF +M P N W + +G + GR A
Sbjct: 384 DMYARCGQVDTSISLFTEM--PNKNTISW--NVIIGALAMHGRAQEA 426
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 50/266 (18%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFD-------------PCADY---HVRLVFSQ 84
H L L+ C++ L ++H +++R L D P A + + R VF
Sbjct: 18 HHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDG 77
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK-- 142
++ P + N ++RGY++ +A + EM +G+ PD + ++ + A K
Sbjct: 78 MAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWR 137
Query: 143 ----QLHSQAIKFGLASDSFLHNTLINMY----------------------------SSC 170
+H+ + G SD F+ + L+N Y S+C
Sbjct: 138 SNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISAC 197
Query: 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
D+ +K+ M+ E + PN VT++++L+A + + + + V+ V + G + V
Sbjct: 198 AQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADV 257
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKM 256
+++ L+ Y KC +S A + F M
Sbjct: 258 DIRNALISMYTKCGCLSDALEAFQAM 283
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + S++ + EM +G+IP++ SL +C
Sbjct: 178 VFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQA 237
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ +++Q KFG+ +D + N LI+MY+ C CL
Sbjct: 238 VDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDG 297
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA++IF M + V P+ +TLV+VL+A A+ +LR VH + ++G
Sbjct: 298 FVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCD 357
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
L +L++ Y KC ++ A +F M
Sbjct: 358 NILTNSLINMYAKCGDMAAAERVFQTM 384
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 37/211 (17%)
Query: 88 PTIYT--CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ-- 143
P YT N+++ G+ + H EA + EM++ G+ PD S+ +CA + ++
Sbjct: 284 PARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGM 343
Query: 144 -LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------------ 178
+HS G+ D+ L N+LINMY+ C + +
Sbjct: 344 HVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGH 403
Query: 179 ----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
A +F M+I V + + LV++L+A ++ L + +H ++E + L++
Sbjct: 404 QFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLES 463
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+D Y KC + A ++F KM WN
Sbjct: 464 ALVDMYAKCGCIDTASEIFRKMQHKQTLSWN 494
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 49/212 (23%)
Query: 44 LVS-LEKCSTMRELKQ---IHA----------QMLRTSLF--FDPCADYHV-RLVFSQIS 86
LVS L C+ + EL++ +H+ +L SL + C D VF ++
Sbjct: 326 LVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMT 385
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQ 143
+ + +V GY + AF + EM + ++ SL +C+ + ++
Sbjct: 386 KKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGRE 445
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------------- 177
+HS + +A D L + L++MY+ C C+D
Sbjct: 446 IHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGY 505
Query: 178 --EAIKIFYRM-EIENVKPNAVTLVNVLTARA 206
EA+++F +M E+++ KP+ +TL VL A A
Sbjct: 506 GKEAVELFDQMLELQDPKPDGITLKAVLGACA 537
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D RL F I + + ++ Y N + +AF + ++ ++P+ +
Sbjct: 307 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
S+ ++C ++ KQ+H+ AIK G SD F+ N L++ Y+ C +D
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR 426
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA+ +F M+ + VT +VL A A +R +
Sbjct: 427 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 486
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+H +++S F + + +L+D Y KC ++ A +F ++ WN
Sbjct: 487 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 535
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 39/227 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---S 134
R +F ++ + + ++V+ + + A + + +G ++F+ ++ K +
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL- 173
+ +HS A K G ++F+ + LI+ YS C W
Sbjct: 175 MDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAM 234
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D P+ A ++F +M + KPN L +VL A + K +H C ++
Sbjct: 235 VSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLN 294
Query: 227 WSHVELKTTLMDAYCKCKFVSRA--------WDLFVKMLFPWNNYGQ 265
+ + L+D Y KC + A +D + + F + Y Q
Sbjct: 295 DTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQ 341
>gi|302761274|ref|XP_002964059.1| hypothetical protein SELMODRAFT_81625 [Selaginella moellendorffii]
gi|300167788|gb|EFJ34392.1| hypothetical protein SELMODRAFT_81625 [Selaginella moellendorffii]
Length = 474
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF +S+ + + N++ Y + +AF Y + ++G+ PD F SL S A
Sbjct: 112 VFYNMSSRNLVSWNTMFGVYADAKCSSQAFRLYQRIQLEGVKPDGITFMSLLNSFASEEA 171
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------ 171
+ K +H+ A + GL D + N+L++MY C W
Sbjct: 172 LEAGKVVHAHAAEAGLEDDVCVANSLLDMYGKCGSLGDTRLLFEKMELRNFISWTSMITA 231
Query: 172 CLDQPD--EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
C Q EA+ +++RM +E V P+ +T VL A A L+ K VH CV E G
Sbjct: 232 CFKQGKDREALHVYHRMLLEAVVPDRLTFATVLNACASLPSLKDGKAVHGCVRERGLAIE 291
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ L T L+ Y K + A F M WN+
Sbjct: 292 LSLGTALVSMYGKGGSLMEAQAAFELMAERDTAAWNS 328
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 47/235 (20%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F C D R F + T+ + +++ Y N + +A + +M ++ + P+
Sbjct: 1 MFGKCGDVDAARETFDVVRQKTVISWTALITAYANHGFYDQALENFQKMELKLVAPNEVT 60
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGLA--------SDSFLHNTLINMYSSCWCLDQPD-- 177
F ++ +CAD S A++ G D + LINMY C L+ +
Sbjct: 61 FVAVLNACAD--------SAALRTGRMIHEYVRCDPDLVVRTALINMYGKCGALEDSERV 112
Query: 178 --------------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
+A +++ R+++E VKP+ +T +++L + A L
Sbjct: 113 FYNMSSRNLVSWNTMFGVYADAKCSSQAFRLYQRIQLEGVKPDGITFMSLLNSFASEEAL 172
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
K VH E+G V + +L+D Y KC + LF KM N+ W
Sbjct: 173 EAGKVVHAHAAEAGLEDDVCVANSLLDMYGKCGSLGDTRLLFEKM--ELRNFISW 225
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
RL+F ++ + S++ + EA YH M+++ ++PDR F ++ +CA
Sbjct: 210 TRLLFEKMELRNFISWTSMITACFKQGKDREALHVYHRMLLEAVVPDRLTFATVLNACAS 269
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI------------ 182
+ K +H + GLA + L L++MY L + A ++
Sbjct: 270 LPSLKDGKAVHGCVRERGLAIELSLGTALVSMYGKGGSLMEAQAAFELMAERDTAAWNSM 329
Query: 183 ----------------FYRMEIENVKPNAVTLVNVLTA 204
F RM+ E+VKP+A+T V VL+A
Sbjct: 330 LAAYAQHGKARGTILAFRRMQQEDVKPDAITYVIVLSA 367
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 50/266 (18%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFD-------------PCADY---HVRLVFSQ 84
H L L+ C++ L ++H +++R L D P A + + R VF
Sbjct: 18 HHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDG 77
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK-- 142
++ P + N ++RGY++ +A + EM +G+ PD + ++ + A K
Sbjct: 78 MAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWR 137
Query: 143 ----QLHSQAIKFGLASDSFLHNTLINMY----------------------------SSC 170
+H+ + G SD F+ + L+N Y S+C
Sbjct: 138 SNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISAC 197
Query: 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
D+ +K+ M+ E + PN VT++++L+A + + + + V+ V + G + V
Sbjct: 198 AQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADV 257
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKM 256
+++ L+ Y KC +S A + F M
Sbjct: 258 DIRNALISMYTKCGCLSDALEAFQAM 283
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + S++ + EM +G+IP++ SL +C
Sbjct: 178 VFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQA 237
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ +++Q KFG+ +D + N LI+MY+ C CL
Sbjct: 238 VDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDG 297
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA++IF M + V P+ +TLV+VL+A A+ +LR VH + ++G
Sbjct: 298 FVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCD 357
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
L +L++ Y KC ++ A +F M
Sbjct: 358 NILTNSLINMYAKCGDMAAAERVFQTM 384
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 37/211 (17%)
Query: 88 PTIYT--CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ-- 143
P YT N+++ G+ + H EA + EM++ G+ PD S+ +CA + ++
Sbjct: 284 PARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGM 343
Query: 144 -LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------------ 178
+HS G+ D+ L N+LINMY+ C + +
Sbjct: 344 HVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGH 403
Query: 179 ----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
A +F M+I V + + LV++L+A ++ L + +H ++E + L++
Sbjct: 404 QFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLES 463
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+D Y KC + A ++F KM WN
Sbjct: 464 ALVDMYAKCGCIDTASEIFRKMQHKQTLSWN 494
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 49/212 (23%)
Query: 44 LVS-LEKCSTMRELKQ---IHA----------QMLRTSLF--FDPCADYHV-RLVFSQIS 86
LVS L C+ + EL++ +H+ +L SL + C D VF ++
Sbjct: 326 LVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMT 385
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQ 143
+ + +V GY + AF + EM + ++ SL +C+ + ++
Sbjct: 386 KKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGRE 445
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------------- 177
+HS + +A D L + L++MY+ C C+D
Sbjct: 446 IHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGY 505
Query: 178 --EAIKIFYRM-EIENVKPNAVTLVNVLTARA 206
EA+++F +M E+++ KP+ +TL VL A A
Sbjct: 506 GKEAVELFDQMLELQDPKPDGITLKAVLGACA 537
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 81/338 (23%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLF-----------FDPCADY----HVRLVFSQISNPTI 90
SL+ C +M E KQI A + + L F + + H +F QI +PTI
Sbjct: 11 SLKNCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTI 70
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
NSI+RG++ + + + +M+ G+ PD +P + K+ A ++ + +H +
Sbjct: 71 SNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCR 130
Query: 148 AIKFGLASDSFLHNTLINMYSS-------------------------------CWCLDQ- 175
K GL D F+ N+LI+MY S C LD
Sbjct: 131 IAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSA 190
Query: 176 -------PDE--------------------AIKIFYRMEIENVKPNAVTLVNVLTARARA 208
PD A+ IF RM + K N VT+V+VL A A
Sbjct: 191 HQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHL 250
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-A 267
L + +H+ + ++ + L+T+LMD Y KC + A +F + + W
Sbjct: 251 GALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNT 310
Query: 268 MSATVGPQGLVGRHST---AHQISGPCPKKAHKLFFFS 302
+ + GLV Q+ G P + L FS
Sbjct: 311 IIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFS 348
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 18/213 (8%)
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK 142
+++S+P++ C S+ ++ +AF + R + S S DI
Sbjct: 5 TKLSSPSLKNCRSM-----SEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDID--- 56
Query: 143 QLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201
HS I + S + + N++I +S P+ ++ +F +M V P+ +T V
Sbjct: 57 --HSYRIFLQIPSPTISNWNSIIRGFSKG---KNPNPSVSVFVKMLRFGVCPDHLTYPFV 111
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
A AR +LR VH + + G W + +L+ Y C + A +F +ML
Sbjct: 112 AKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLI--R 169
Query: 262 NYGQWAMSATVGPQGLVGRHSTAHQISGPCPKK 294
N W +A + G +AHQ+ P +
Sbjct: 170 NSVSW--NAMLDGYAKCGDLDSAHQVFXSMPDR 200
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 32/225 (14%)
Query: 53 MRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTCNSIVRG 99
M ELK+IHA +++ SL D C + + L+F ++++P + N+++R
Sbjct: 1 MVELKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRA 60
Query: 100 YTNKNLHHEAFLFYHEMIVQG-----LIPDRFMFPSLFKSCADIY---VEKQLHSQAIKF 151
Y + ++ A + +M+ PD+F FP + K CA + + KQ+H A KF
Sbjct: 61 YKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKF 120
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
G S++ + N+L+ MY C D D+A ++F M + +AV+ +++ R +
Sbjct: 121 GPKSNTVIENSLVEMYVKC---DSLDDAHRVFEEM----TERDAVSWNTLISGHVRLGQM 173
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R + + + + + +S T ++ Y + + A + F +M
Sbjct: 174 RRARAIFEELQDKTIFSW----TAIVSGYARIGCHAVALEFFRRM 214
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 40/200 (20%)
Query: 49 KCSTMRELKQIHAQML-RTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRG 99
KC ++ + ++ +M R ++ ++ HVRL +F ++ + TI++ +IV G
Sbjct: 138 KCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSG 197
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASD 156
Y H A F+ M + + D S+ +CA + + K +H A K G D
Sbjct: 198 YARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRD 257
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+ N LI +Y+ +D+ EAI++F M+
Sbjct: 258 ICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQK 317
Query: 189 ENVKPNAVTLVNVLTARARA 208
V+PN +T V +L+A A A
Sbjct: 318 AKVEPNIITFVGLLSACAHA 337
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A++ F RM++ +++ + ++LV+VL A A+ L K +H D++GF + + L++
Sbjct: 207 ALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIE 266
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y K + LF KM
Sbjct: 267 VYAKRGSMDEGRRLFHKM 284
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 116/299 (38%), Gaps = 84/299 (28%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------------FFDPCADYHVRLVF----SQISNP 88
LEKC + KQIH+ +++T L P D L Q
Sbjct: 35 LEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKH 94
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
++ NS++RGY+ + + + M+ G+ P+ FP LFKSC + KQLH
Sbjct: 95 NVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLH 154
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+ A+K L + +H ++I+MY+S +D D
Sbjct: 155 AHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLD 214
Query: 178 EAIKIFYRMEIE-------------------------------NVKPNAVTLVNVLTARA 206
+A ++F + ++ NV PN T+V VL+A
Sbjct: 215 DARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACG 274
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
R K + V ++GF S+++L L+D YCKC A +LF K + WN
Sbjct: 275 HTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWN 333
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
S++R+ A L T C D R +F +I + + N+++ GY EA
Sbjct: 192 SSLRDAVSFTA--LITGYVSQGCLD-DARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAI 248
Query: 111 LFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMY 167
+ ++EM ++P++ + +C + K + S G S+ L N LI+MY
Sbjct: 249 VCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMY 308
Query: 168 SSCWCLDQP----------------------------DEAIKIFYRMEIENVKPNAVTLV 199
C D +EA+ +F M NVKPN VT +
Sbjct: 309 CKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFL 368
Query: 200 NVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
+L A A L K VH +D++ S+ L T+L+D Y KC + A +F M
Sbjct: 369 GILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHS 428
Query: 257 --LFPWN 261
L WN
Sbjct: 429 RNLASWN 435
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 57 KQIHAQMLRTS-------------LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
+++H ++L++ ++ + C + VF ++ + +SI+ Y
Sbjct: 122 RKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVEN 181
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLH 160
++ E + MI +G+ PD M S+ ++C I + K +H ++ G+ D L
Sbjct: 182 GVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLS 241
Query: 161 NTLINMYSSCW----------CLDQP------------------DEAIKIFYRMEIENVK 192
N+LI MYS C C+D +EA+ +F +M+ V+
Sbjct: 242 NSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVE 301
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-SHVELKTTLMDAYCKC 243
PN VT+++VL + AR L+ K VH V + + ++L L+D Y C
Sbjct: 302 PNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSAC 353
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 47/251 (18%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSI 96
CST+R L Q+HA ++ TSL +P A + RLVF +P + + +
Sbjct: 11 CSTLRRLTQLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVL 70
Query: 97 VRGYTNKNLHHEAF-LFYHEMIVQGLIPDR--FMFPSLFKS---CADIYVEKQLHSQAIK 150
++ + +L E LF H + + + F++PS+ ++ ++ V ++LH + +K
Sbjct: 71 IKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILK 130
Query: 151 FGLASDSFLHNTLINMYSS-CWCLDQPD---------------------------EAIKI 182
G D + +L+ MY C+ D E +++
Sbjct: 131 SGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEM 190
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M E ++P++V L++V A + LR K VH V G L +L+ Y +
Sbjct: 191 FRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQ 250
Query: 243 CKFVSRAWDLF 253
C ++ RA LF
Sbjct: 251 CGYLCRAKRLF 261
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 107/247 (43%), Gaps = 44/247 (17%)
Query: 57 KQIHAQMLRTSLF-----------FDPCA-DYHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
+QIH +++ F + C +F++I + +I N ++ G++
Sbjct: 426 QQIHGHVMKRGFFDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNG 485
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQ--LHSQAIKFGLASDSFLHN 161
+ EA + EM L ++ F S ++C+++ Y++K +H + I G +D ++
Sbjct: 486 ISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDT 545
Query: 162 TLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKP 193
L++MY+ C L Q + A +F++M + N+KP
Sbjct: 546 ALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKP 605
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N VT +N+L+A A ++ K + D G +VE +++D + ++ A+++
Sbjct: 606 NEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEI 665
Query: 253 FVKMLFP 259
+ P
Sbjct: 666 IKSIRTP 672
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 50/262 (19%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQ-------------ISNPTIYTCNS 95
K +R K +H ++R + D + +++SQ I + + S
Sbjct: 215 KIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTS 274
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFG 152
++ Y EA + +M + P+ S+ SCA + K+ +H ++
Sbjct: 275 MISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNA 334
Query: 153 LASDSF-LHNTLINMYSSCWCLDQ----------------------------PDEAIKIF 183
+ L LI+ YS+CW + DEA+ F
Sbjct: 335 MGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFF 394
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
M + + P++ +L + ++A A + ++ +++H V + GF+ ++ +LMD Y KC
Sbjct: 395 ACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEF-VQNSLMDMYSKC 453
Query: 244 KFVSRAWDLFVKM----LFPWN 261
F S A+ +F K+ + WN
Sbjct: 454 GFASSAYTIFNKIKHKSIVAWN 475
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV---------------FSQISNP 88
L+ C R L +QIHA++L+ FF +LV F ++
Sbjct: 1181 LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR 1240
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+++ +IV +A L + EM G+ PD F+ P++ K+C I + K +H
Sbjct: 1241 NVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVH 1300
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+K G + F+ ++L++MY C L+
Sbjct: 1301 GYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQ 1360
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +FY M +E ++P VT+ + L+A A L K+ H + L ++++
Sbjct: 1361 EAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSII 1420
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ Y K + A +F +ML WN
Sbjct: 1421 NFYSKVGLIEDAELVFSRMLEKDVVTWN 1448
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 37/233 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF + + T NS++ GY L+ EA +++M V+G+ P R S + A
Sbjct: 1332 RKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANL 1391
Query: 137 DIYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
D +E KQ H+ AI L D+ L +++IN YS ++
Sbjct: 1392 DALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLI 1451
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q +A+ + + M EN++ ++VTL ++L+A A +++ K H
Sbjct: 1452 SSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLE 1511
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQG 276
S V + +++D Y KC+ + A +F + L WN A A VG G
Sbjct: 1512 SDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTL--LAAYAQVGLSG 1562
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSC 135
R VF + + N+++ Y L EA +++M + P+ + S+ F
Sbjct: 1534 RKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRN 1593
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---EAIKIFYRMEIENVK 192
+ K + SQ G + TLI+ L Q EAI F +M+ ++
Sbjct: 1594 GQVNEAKDMFSQMQSLGFQPNLITWTTLIS------GLAQSGFGYEAILFFQKMQEAGIR 1647
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ ++ +VL A L + +H + F V + T+L+D Y KC + A +
Sbjct: 1648 PSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKV 1707
Query: 253 F 253
F
Sbjct: 1708 F 1708
>gi|302775788|ref|XP_002971311.1| hypothetical protein SELMODRAFT_61689 [Selaginella moellendorffii]
gi|300161293|gb|EFJ27909.1| hypothetical protein SELMODRAFT_61689 [Selaginella moellendorffii]
Length = 604
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 54/268 (20%)
Query: 47 LEKCSTMR---ELKQIHAQMLRTSLF---------------FDPCADY-HVRLVFSQISN 87
L+ CS +R E +Q+ ++ S F + C + R VF
Sbjct: 89 LKACSELRYLEEGRQVENLLVSGSCFPSSLDAAVLTSLLNLYASCGSLENARRVFESFHE 148
Query: 88 PTIYTCNSIVRGYTN-KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ--- 143
+ NS++ Y + + F+ +M+++G+ + F + +C+ + +Q
Sbjct: 149 KDLVCWNSMLAAYAKHEKTGRQTLEFFQKMLLEGVAANVVSFTCVVGACSRPELSEQGTV 208
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSC------WCLDQP--------------------- 176
+H Q GL +DSFL L+NMYS C W L Q
Sbjct: 209 IHEQITCSGLVADSFLAAALVNMYSKCGRLGSAWELFQRVDVKMSLVSWNSILAAHAQRA 268
Query: 177 --DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELK 233
+ ++IF +++E +KP+ VTL++VL + LR V+ +++ V + G SH + L
Sbjct: 269 DLTKVLEIFGMLQLEGLKPSGVTLISVLGGCCSTQALRIVEHIYERVAQEGEISHDLFLG 328
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
T LM + C C ++ A LF + L WN
Sbjct: 329 TALMTSLCDCGKLADAESLFYR-LNRWN 355
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 40/222 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
VF +I + +++ ++ T L + M+++G+ PDR + + K+C+++ Y
Sbjct: 38 VFQRIKDRNVFSWTILMDACTENGLSELTLELFRRMLLEGIRPDRVAYLGVLKACSELRY 97
Query: 140 VE--KQLHSQAIK---FGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+E +Q+ + + F + D+ + +L+N+Y+SC L+
Sbjct: 98 LEEGRQVENLLVSGSCFPSSLDAAVLTSLLNLYASCGSLENARRVFESFHEKDLVCWNSM 157
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ ++ F +M +E V N V+ V+ A +R +H+ + SG
Sbjct: 158 LAAYAKHEKTGRQTLEFFQKMLLEGVAANVVSFTCVVGACSRPELSEQGTVIHEQITCSG 217
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF----VKM-LFPWNN 262
+ L L++ Y KC + AW+LF VKM L WN+
Sbjct: 218 LVADSFLAAALVNMYSKCGRLGSAWELFQRVDVKMSLVSWNS 259
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ--A 148
N+++ GY +A +EM ++G+ P+ F + +C+ + V K +H + A
Sbjct: 360 NTMIAGYVQHGFDLQALHLLYEMDLEGIKPNVVTFLGIVDACSSLAVLGNAKAVHERISA 419
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAV 196
K GL D+ L +++MY++C D +++ ++F +++ + V NAV
Sbjct: 420 SKVGL--DTVLGTAIVSMYANC---DSLEDSRRVFESLDLRDTVSWNAV 463
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ + Y M++E +KPN VT + ++ A + L K VH+ + S L T ++
Sbjct: 374 QALHLLYEMDLEGIKPNVVTFLGIVDACSSLAVLGNAKAVHERISASKVGLDTVLGTAIV 433
Query: 238 DAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQG 276
Y C + + +F ++ WN A+ A QG
Sbjct: 434 SMYANCDSLEDSRRVFESLDLRDTVSWN-----AVIAAYAEQG 471
>gi|302810303|ref|XP_002986843.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
gi|300145497|gb|EFJ12173.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
Length = 845
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 46/258 (17%)
Query: 44 LVSLEKCS---TMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISN 87
+++L C+ ++ + K IH+++ R L + C D R VF I
Sbjct: 328 VIALSTCAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILG 387
Query: 88 PTIYTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS 146
+ + N+++ Y +++LH A + M++ G+ P R ++ + V KQLH
Sbjct: 388 KNVVSWNNMIAAYGRDESLHSRALEIFRLMLLDGVRPTRTTALNVVSAVECQSVGKQLHG 447
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
+ GL SDSF+ + L+NMY L QP E
Sbjct: 448 WIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPRE 507
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A++ F RM +E N T + L+A + R + +++H + ESG + + L+
Sbjct: 508 ALEWFSRMLLEGASGNRATFLLALSAVSPDR-VSYGRKLHGLIAESGLEADNNVANALIS 566
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y +CK + A + F ++
Sbjct: 567 MYARCKSLEDARNTFDRL 584
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 123/303 (40%), Gaps = 54/303 (17%)
Query: 11 TRTPALSSDNSPLINLDNI--------NNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQ 62
T P++S D+S + L N+ ++ S QA L+ A
Sbjct: 19 TSQPSVSDDHSKFLKLVNLCAERKLLHEATSVYSSIQAQGILLD----------GFFGAS 68
Query: 63 MLRTSLFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121
++R F C H VF Q+ + ++ S+V + + A+LF+ M ++G+
Sbjct: 69 VVR---MFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGV 125
Query: 122 IPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----- 176
+PDR F S+ +C + + +H + L SD + N L+ M + C+ LD
Sbjct: 126 LPDRVTFISILNACESLAQGELVHRLIVDKNLESDVVIGNALMKMLAKCYDLDGAARFFQ 185
Query: 177 -----------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
EA + RM +E V PN +T + VL A + ARD
Sbjct: 186 RMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSARD--- 242
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273
V+ V E+ + + + ++ + KC + RA D+F +M W+ AM A +
Sbjct: 243 ADLVYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMK-RWDVKSWNAMVAALA 301
Query: 274 PQG 276
G
Sbjct: 302 QHG 304
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 112/280 (40%), Gaps = 56/280 (20%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
+VS +C ++ KQ+H ++ T L+ D + R VF +I +
Sbjct: 432 VVSAVECQSVG--KQLHGWIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDV 489
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE--KQLHSQA 148
+ N+IV EA ++ M+++G +R F + + V ++LH
Sbjct: 490 FAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALSAVSPDRVSYGRKLHGLI 549
Query: 149 IKFGLASDSFLHNTLINMYSSC--------------------W------CLDQPD--EAI 180
+ GL +D+ + N LI+MY+ C W C+D EAI
Sbjct: 550 AESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAI 609
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F RME+E P+ VT VL A R K VH E G S+V + T L+ +
Sbjct: 610 DLFQRMELE---PDRVTFTTVLEACTIVSAHREGKLVHSRARELGLESNVFVATALIHMH 666
Query: 241 CKCKFVSRAWDLFVKMLFP----WN----NYGQWAMSATV 272
K + A +F + P WN Y Q S +V
Sbjct: 667 SKFGNLGEARRIFEAVEAPTLACWNAMLGGYAQTGHSQSV 706
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 40/217 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + N++V EA + M + + + +L A +
Sbjct: 281 VFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSEVAVDKTTLVIALSTCAAPESL 340
Query: 141 E--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------------- 176
E K +HS+ + GL +D L+ MYS C L +
Sbjct: 341 EDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAY 400
Query: 177 --DE-----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV-KRVHKCVDESGFWS 228
DE A++IF M ++ V+P T +NV++ A + ++V K++H + ++G +S
Sbjct: 401 GRDESLHSRALEIFRLMLLDGVRPTRTTALNVVS----AVECQSVGKQLHGWIVDTGLYS 456
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ + L++ Y + + A +F K++ F WN
Sbjct: 457 DSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWN 493
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 35/240 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F ++ + +I + S++ + EA + M ++ PDR F ++ ++C +
Sbjct: 578 RNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTTVLEACTIV 634
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYS--------------------SCWC--- 172
++ +HS+A + GL S+ F+ LI+M+S +CW
Sbjct: 635 SAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVEAPTLACWNAML 694
Query: 173 -----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGF 226
I F+ M+ V P+ +T + V++A + A + R + + G
Sbjct: 695 GGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGARTFASMGPDYGV 754
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+E L+D + + A+D M ++ + A QG V R S A +
Sbjct: 755 GHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQGDVRRGSAAAR 814
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 39/238 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SC 135
RLVF + + + + N+++ G HEAF + +M +GL+PD + SL S
Sbjct: 478 RLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGST 537
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ ++H A++ GL SD + + I+MY C +D
Sbjct: 538 DALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMI 597
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+ +F +M+ E P+A T +N+L+A L VK VH ++G
Sbjct: 598 GGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL- 656
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAH 285
+ + L+ Y KC V A +F M+ N W M G + +H H
Sbjct: 657 VDLRVGNALVHTYSKCGNVKYAKQVFDDMVE--RNVTTWTMMI-----GGLAQHGCGH 707
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 50/255 (19%)
Query: 57 KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
K+IHA ++++ D C +L+F ++ + + ++ G +
Sbjct: 239 KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHY 298
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKFGLASDSFLH 160
EAF + +M +G IP+ + + S+ S + K++HS A+ GLA D +
Sbjct: 299 GRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG 358
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N L++MY+ +D + EA +F +M+
Sbjct: 359 NALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL 418
Query: 193 PNAVTLVNVLTARARARD--LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
PN T +++L A A A L VK VHK +E+GF S + + L+ Y KC + A
Sbjct: 419 PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR 478
Query: 251 DLFVKM----LFPWN 261
+F M + WN
Sbjct: 479 LVFDGMCDRDVISWN 493
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 43/259 (16%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYH-VRLVFSQISNPTIYTCNSIV 97
Q H C++ S M + + ++LR + C R VF ++ IY +++
Sbjct: 139 QVHVCIIK----SGMEQNLYVANKLLRV---YIRCGRLQCARQVFDKLLKKNIYIWTTMI 191
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLA 154
GY +A Y +M + P+ + S+ K+C ++ K++H+ I+ G
Sbjct: 192 GGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQ 251
Query: 155 SDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRM 186
SD + L+NMY C ++ + EA +F +M
Sbjct: 252 SDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQM 311
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ E PN+ T V++L A A A L VK VH +G + + L+ Y K +
Sbjct: 312 QREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSI 371
Query: 247 SRAWDLFVKM----LFPWN 261
A +F M +F W
Sbjct: 372 DDARVVFDGMTERDIFSWT 390
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 36/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
RL+F ++S + T N+++ G + EA + +M +G IPD F ++ + D
Sbjct: 579 RLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDE 638
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+ K++HS A GL D + N L++ YS C W +
Sbjct: 639 EALEWVKEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMI 697
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+A F +M E + P+A T V++L+A A L VK VH +G
Sbjct: 698 GGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLV 757
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
S + + L+ Y KC + A +F M +F W
Sbjct: 758 SDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWT 795
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 32/167 (19%)
Query: 70 FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C + + + VF + + T ++ G H+AF + +M+ +G++PD +
Sbjct: 669 YSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTY 728
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------- 177
S+ +CA K++H+ A+ GL SD + N L++MY+ C +D
Sbjct: 729 VSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVE 788
Query: 178 --------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ F +M+ E KPN + V VLTA
Sbjct: 789 RDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTA 835
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF +I +P + + NS++ ++ K L EA + + EM GL PD +L +C
Sbjct: 305 ARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVG 364
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--- 171
++ + +HS +K GL D + N+L++MY+ C W
Sbjct: 365 YDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSI 424
Query: 172 ---CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
C+ ++ K+F + + ++L NVL+A A VK+VH + G
Sbjct: 425 LTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGL 484
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
L L+D Y KC + A LF M +F W++
Sbjct: 485 VGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSS 525
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 110/253 (43%), Gaps = 49/253 (19%)
Query: 50 CSTMREL---KQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTIYTC 93
CS + +L +Q+HAQ ++ +++ + +F +I + + +
Sbjct: 158 CSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISW 217
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA----DIYVEKQLHSQA 148
SI+ G + +A + EMI +G+ P+ F F S+F++C+ + +Q+H +
Sbjct: 218 GSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVS 277
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQ----------PD------------------EAI 180
+K+ L +S+ +L +MY+ C LD PD EA+
Sbjct: 278 VKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAM 337
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M ++P+ +T++ +L A L + +H + + G V + +L+ Y
Sbjct: 338 VLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMY 397
Query: 241 CKCKFVSRAWDLF 253
+C S A D+F
Sbjct: 398 ARCLDFSSAMDVF 410
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 33/168 (19%)
Query: 73 CADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C D+ + VF + + + T NSI+ + F + + DR ++
Sbjct: 400 CLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNV 459
Query: 132 FKSCADI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------- 177
+ A++ Y E KQ+H+ A K GL D+ L N LI+ Y+ C LD +
Sbjct: 460 LSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRD 519
Query: 178 ------------------EAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
EA+ +F RM VKPN VT V VLTA +R
Sbjct: 520 VFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSR 567
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R+VF + + + +++ + + +A + M+ G +PD+F S +C
Sbjct: 101 ARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSE 160
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
D+ + +Q+H+QAIK+ SD + N L+ MYS
Sbjct: 161 LGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYS 194
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 30 NNNNINSQYQAHFCLVSL---EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+ NI++ Q H +V + + T L ++ +M R + ++F ++
Sbjct: 121 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI---------ASVIFEKMP 171
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + + N+++ G H A +M GL+P+ FM S+ K+CA + +Q
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 231
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+H IK SD ++ L++MY+ LD
Sbjct: 232 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 291
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA IFY + E + N TL VL + A ++VH ++ GF +
Sbjct: 292 HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNG 351
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D+Y KC +S A +F
Sbjct: 352 LIDSYWKCSCLSDAIRVF 369
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 50/263 (19%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTI 90
SLE S R Q+HA + FD C +R VF + S+ I
Sbjct: 322 ASLEAASATR---QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIR-VFEECSSGDI 377
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
S++ + + A + EM+ +GL PD F+ SL +CA + KQ+H+
Sbjct: 378 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 437
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK SD+F N L+ Y+ C ++ + A
Sbjct: 438 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 497
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMD 238
+++F RM E + PN +T+ +VL A A + KR + E G E + ++D
Sbjct: 498 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 557
Query: 239 AYCKCKFVSRAWDLFVKMLFPWN 261
+ + A +L M F N
Sbjct: 558 LLGRAGKLDDAMELVNSMPFQAN 580
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 33/179 (18%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-- 173
M +G+ + F P + K D + Q+H+ A+ G SD F+ N L+ MY +
Sbjct: 1 MRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDD 60
Query: 174 ---------------------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
DQ +AI++F M ++P V+ A
Sbjct: 61 ARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 120
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+R++ ++VH V G+ V L+D Y K V A +F KM + WN
Sbjct: 121 GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWN 179
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 46/264 (17%)
Query: 47 LEKCSTMRELKQIHAQML-------RTSLFFDPCA------DYHVRLVFSQISNPTIYTC 93
L +C ++ L Q+HA ++ + + CA ++ R +F +I +P +
Sbjct: 19 LRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVY 78
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQAIK 150
NS++R Y N + EA MI +G++P+ F P L K+CA + + + H +K
Sbjct: 79 NSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVK 138
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G F+ N L++ Y+S L EA +
Sbjct: 139 LGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSL 198
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M + + + TLV++L A + +L K VH + G + L L+D Y K
Sbjct: 199 FEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGK 258
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW 266
C + A F M P+ N W
Sbjct: 259 CGDLLMAHTCFDMM--PFKNAVSW 280
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 66/268 (24%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R F ++ + + + NS++ GY EA + M QGL+ D F SL +C
Sbjct: 165 RRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAE 224
Query: 136 ADIYVEKQLHSQAI----------------KFGLASDSFLHNTLINM--------YSSCW 171
++ K +HS + +G D + +T +M ++S
Sbjct: 225 GNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSML 284
Query: 172 C-------LDQ--------PD--------------------EAIKIFYRMEIENVKPNAV 196
C +D P+ EA+ ++ RM++ + P+
Sbjct: 285 CALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEF 344
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
TL VL+A + DL + K +H C+ ++ V L +L+D Y +C V A LF +M
Sbjct: 345 TLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEM 404
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
P N W +A +G + GR A
Sbjct: 405 --PSKNVISW--NAIIGALAMHGRAQDA 428
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 46/264 (17%)
Query: 47 LEKCSTMRELKQIHAQML-------RTSLFFDPCA------DYHVRLVFSQISNPTIYTC 93
L +C ++ L Q+HA ++ + + CA ++ R +F +I +P +
Sbjct: 19 LRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVY 78
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQAIK 150
NS++R Y N + EA MI +G++P+ F P L K+CA + + + H +K
Sbjct: 79 NSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVK 138
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G F+ N L++ Y+S L EA +
Sbjct: 139 LGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSL 198
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M + + + TLV++L A + +L K VH + G + L L+D Y K
Sbjct: 199 FEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGK 258
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW 266
C + A F M P+ N W
Sbjct: 259 CGDLLMAHTCFDMM--PFKNAVSW 280
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 66/268 (24%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R F ++ + + + NS++ GY EA + M QGL+ D F SL +C
Sbjct: 165 RRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAE 224
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------CLDQ------------- 175
++ K +HS + G D L N L++MY C C D
Sbjct: 225 GNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSML 284
Query: 176 -------------------PDEAI--------------------KIFYRMEIENVKPNAV 196
P+++I ++ RM++ + P+
Sbjct: 285 CALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEF 344
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
TL VL+A + DL + K +H C+ ++ V L +L+D Y +C V A LF +M
Sbjct: 345 TLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEM 404
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTA 284
P N W +A +G + GR A
Sbjct: 405 --PSKNVISW--NAIIGALAMHGRAQDA 428
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 45/209 (21%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQM-LRTSLFFDP------------CAD-YHVRLVFSQIS 86
+ C L+K ++ LK++H+++ + L +P C + + R +F +I
Sbjct: 1028 NLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIP 1087
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
+ N ++R Y N +L+ +A L + M G+ PD + +P + K+ + D++V Q
Sbjct: 1088 KKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQ 1147
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQ 175
+H+ ++ GL + F+ N LI+MY C CL Q
Sbjct: 1148 IHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQ 1207
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+A+++ ME+ +KP+A T+ ++L A
Sbjct: 1208 FDDALEVCKEMELLGLKPDAGTMASLLPA 1236
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 35/236 (14%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFS 83
++L+ N + S Y CLV E C + Z+ PC D
Sbjct: 1157 LDLNVFVGNGLISMYGKCGCLV--EACRVLDZM---------------PCRD-------- 1191
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
+ + NS+V G +A EM + GL PD SL + + ++
Sbjct: 1192 ------VVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245
Query: 144 LHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL 202
+ + LA+ S + N +I +Y + P EA+ IF +ME V P+A+++ +VL
Sbjct: 1246 SFVKEMFMKLANKSLVSWNVMIAVYMNN---SMPAEAVDIFLQMEDHAVDPDAISIASVL 1302
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
A L +R+H+ V ++ L+ L+D Y KC + A ++F +M F
Sbjct: 1303 PACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKF 1358
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 109/259 (42%), Gaps = 35/259 (13%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
V+ +F +++N ++ + N ++ Y N ++ EA + +M + PD S+ +C D
Sbjct: 1248 VKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGD 1307
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
+ + +++H ++ L + L N LI+MY+ C CL+ E
Sbjct: 1308 LSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSM 1367
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESG 225
A+ +F RM+ + P+++ V+VL+A + A L + K + +E
Sbjct: 1368 ISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECK 1427
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN--YGQWAMSATVGPQGLVGRHST 283
+E ++D + V A+ +M N +G + V ++G +
Sbjct: 1428 IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLA- 1486
Query: 284 AHQISGPCPKKAHKLFFFS 302
A Q+ CP+++ S
Sbjct: 1487 ADQLFQLCPEQSGYYVLLS 1505
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 34/209 (16%)
Query: 81 VFSQISNPT--IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
VF IS PT +Y NSI+R T+ L +A +Y EM + L PD F FPS+ SCA
Sbjct: 76 VFRSIS-PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARI 134
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
D+ + +H A++ G SD ++ N LI+MYS LD
Sbjct: 135 LDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLI 194
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
++A+ ++++ + + P+ T+ +VL A ++ VH +++ G
Sbjct: 195 SGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIA 254
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + L+ Y K + + A +F KM
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKM 283
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF ++SN + NS++ GY + +A YH+ + G++PD F S+ +C
Sbjct: 174 NARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG 233
Query: 137 DIYVEKQ---LHSQAIKFGLASDSFLHNTLINMY--------------------SSCW-- 171
+ K+ +H K G+A D + N L++MY S W
Sbjct: 234 SLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNT 293
Query: 172 --C----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C L + + ++K+F M I+ P+ +++ + + A ++ DL+ K VHK + SG
Sbjct: 294 MICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSG 352
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
F L+D Y KC + A ++F
Sbjct: 353 FECDTVACNILIDMYAKCGDLLAAQEVF 380
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VFS+++ T N+++ GY H + + +MI G +PD S ++C
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACG 333
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQP---- 176
D+ V K +H I G D+ N LI+MY+ C C D
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
E ++ F M++E KP++VT V +L+ ++ D+ + +H V + G
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
F + + + +L+D Y KC + +F M + WN
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNT 493
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 39/222 (17%)
Query: 70 FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D + VF T NS++ GYT + E + M ++ PD F
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTF 425
Query: 129 P---SLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY- 184
S+F ADI + +H IKFG ++ + N+L+++Y+ C + D+ +K+F
Sbjct: 426 VLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKC---GEMDDLLKVFSY 482
Query: 185 ------------------------------RMEIENVKPNAVTLVNVLTARARARDLRTV 214
M E + P+ T++ +L + R
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K +H + +SGF S+V + L++ Y KC + +F M
Sbjct: 543 KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYM 584
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS +S I + N+++ + + F +EM +GL+PD + C+ + V
Sbjct: 479 VFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAV 538
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+Q +H K G S+ + N LI MYS C L+ IK+F M+ ++V
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLEN---CIKVFKYMKEKDV 589
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 127/316 (40%), Gaps = 51/316 (16%)
Query: 47 LEKCSTMRELKQIHAQMLR-TSLFFDP--------------CADY-HVRLVFSQISNPTI 90
L+ CS ++ L+Q A R S F+P C D R F +
Sbjct: 340 LQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDV 399
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ S++ Y+++N EA +H M ++G+ P+ F ++ +C + + + LHS+
Sbjct: 400 ISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSR 459
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+ G SD F+ N L++MYS +D EA
Sbjct: 460 VVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQNGHSHEA 519
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++++ R+ +E +P + L + D+ + +H + S F+ + L LM+
Sbjct: 520 LEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNV 579
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLF 299
Y KC + +A +F +M N W + +G GR + A ++ + + +
Sbjct: 580 YAKCGELEKARLVFDQM--TEKNEVSW--TTMIGGYAQNGRPAEALELYKAMDVQPNFIA 635
Query: 300 FFSMLKKVHVPGVLIQ 315
F ++ G L++
Sbjct: 636 FVPVISSCADLGALVE 651
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 40/203 (19%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFG 152
++ Y K H EA Y EM +G+ P+ F + +CA D+ K++H + +
Sbjct: 1 MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60
Query: 153 LASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFY 184
D+ L N L+N+Y+ C L++ EA++ F
Sbjct: 61 ARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFR 120
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE--LKTTLMDAYCK 242
RM + P+++T +VL A DL T K +H+ + S + L+ +L+ Y K
Sbjct: 121 RM---DAPPSSITFTSVLGACCSPDDLETGKAIHRQIGGSSPQIQADEILQNSLVTMYGK 177
Query: 243 CKFVSRAWDLF----VKMLFPWN 261
C + A +F K F W
Sbjct: 178 CGSLEDAERVFHGIRRKNAFSWT 200
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 59/299 (19%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-- 78
+ L+ + N+I FC V ++ CS + L + +H++++ T D +
Sbjct: 425 MELEGVEPNSIT------FCTV-IDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVS 477
Query: 79 -----------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
R+VF I + ++ T HEA Y + ++G P +
Sbjct: 478 MYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPI 537
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------- 175
F + SC D+ + +H D L N L+N+Y+ C L++
Sbjct: 538 FSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVFDQMT 597
Query: 176 -------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
P EA++++ M +V+PN + V V+++ A L +R
Sbjct: 598 EKNEVSWTTMIGGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVEGQR 654
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275
VH + ++G ++ + T L++ Y KC + A + F P + G W AT Q
Sbjct: 655 VHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCP--DAGAWNSMATAYAQ 711
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 34/158 (21%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
RLVF Q++ + +++ GY EA Y M VQ P+ F + SCAD
Sbjct: 589 ARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAMDVQ---PNFIAFVPVISSCAD 645
Query: 138 I--YVEKQ-LHSQAIKFGLASDSFLHNTLINMYSSC-------------WCLD------- 174
+ VE Q +H++ GL ++ + L+NMY+ C +C D
Sbjct: 646 LGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSM 705
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ ++++ M ++ V+PN +TL++VL A
Sbjct: 706 ATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVA 743
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 111/283 (39%), Gaps = 58/283 (20%)
Query: 27 DNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQM----------LRTSLF--FD 71
+ ++ ++ + C++S C+ ++++ K++H ++ L+ +L +
Sbjct: 19 EEMDERGVDPNDKTFACVLS--ACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYA 76
Query: 72 PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
C D R +F + T+ T N+++ Y + EA + M P F S
Sbjct: 77 KCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRMDAP---PSSITFTS 133
Query: 131 LFKSCA---DIYVEKQLHSQAIKFG--LASDSFLHNTLINMYSSCWCLDQPD-------- 177
+ +C D+ K +H Q + +D L N+L+ MY C L+ +
Sbjct: 134 VLGACCSPDDLETGKAIHRQIGGSSPQIQADEILQNSLVTMYGKCGSLEDAERVFHGIRR 193
Query: 178 --------------------EAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKR 216
AI++F M E V+P+ +T VLTA + DL T R
Sbjct: 194 KNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMR 253
Query: 217 VHKCVDES---GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+H + G L+ ++ + +C + ++F +M
Sbjct: 254 IHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRM 296
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 QIHA-QMLRTSL--FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFY 113
QI A ++L+ SL + C VF I ++ +++ Y A +
Sbjct: 160 QIQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVF 219
Query: 114 HEMIVQGLI-PDRFMFPSLFKSC---ADIYVEKQLHS---QAIKFGLASDSFLHNTLINM 166
+M+ +G + PD + + +C D+ ++H+ + GL D L + ++++
Sbjct: 220 GDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSL 279
Query: 167 YSSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVTL 198
++ C L EA+++++ M+IE P+ + L
Sbjct: 280 HARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELYHCMDIE---PDDIAL 336
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
NVL A +R ++L + VH + F + ++T L+D Y KC ++ A F
Sbjct: 337 SNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTF 391
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D RL F I + + ++ Y N + +AF + ++ ++P+ +
Sbjct: 307 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
S+ ++C ++ KQ+H+ AIK G SD F+ N L++ Y+ C +D
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR 426
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA+ +F M+ + VT +VL A A +R +
Sbjct: 427 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 486
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+H +++S F + + +L+D Y KC ++ A +F ++ WN
Sbjct: 487 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 535
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 31/202 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + ++V+ + + A + + +G ++F+ ++ K +
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+ +HS A K G ++F+ + LI+ YS C W
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
D P+ A ++F +M + KPN L +VL A + K +H C ++
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLND 295
Query: 228 SHVELKTTLMDAYCKCKFVSRA 249
+ + L+D Y KC + A
Sbjct: 296 TEPHVGGALLDMYAKCGDIKDA 317
>gi|33147029|dbj|BAC80112.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 757
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 34/240 (14%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
S M H S++F H R VF + + + ++V G+T + +A
Sbjct: 435 SGMCGAGDFHVGSSLVSMYFRVGQPGHARRVFDGMEQRNVVSWTAMVGGFTESGMFEDAV 494
Query: 111 LFYHEMIVQG-LIPDRFMFPSLF---KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+ M V G ++P+R S+ ++ D+ KQ+H A++ GL+ + L+N LI M
Sbjct: 495 DAFRAMWVIGAVLPNRIALISVLSAVEALTDLAAGKQVHGFAVRMGLSGEVSLNNALIVM 554
Query: 167 YSSC--------------WCLD---------------QPDEAIKIFYRMEIENVKPNAVT 197
Y C WC D + EA+ +F +M I VKP+++T
Sbjct: 555 YVKCGVLWYARQIFDDGRWCKDVISWCSMIQGYGLHGKGAEAVALFDQMHISGVKPDSIT 614
Query: 198 LVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ VL+A +RA + + ++ + V + G E+ ++D + +++A D M
Sbjct: 615 GLGVLSACSRAGLVFKGLEIYNSLVKDYGVHPTEEMSACIVDLLGRSGMINQALDFIKSM 674
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 40/220 (18%)
Query: 68 LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
L+ + R +F ++ T T N+++ ++ + + M+ G +PDRF
Sbjct: 355 LYLRAASPGLARRLFDEMPARTASTYNTLI---SHSPPGVDVWPVVRHMVEDGCVPDRFT 411
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGL--ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
S+ +C ++LH A+K G+ A D + ++L++MY + + QP A ++F
Sbjct: 412 VSSILPACESELRGRELHCFALKSGMCGAGDFHVGSSLVSMY---FRVGQPGHARRVFDG 468
Query: 186 MEIENVK--------------------------------PNAVTLVNVLTARARARDLRT 213
ME NV PN + L++VL+A DL
Sbjct: 469 MEQRNVVSWTAMVGGFTESGMFEDAVDAFRAMWVIGAVLPNRIALISVLSAVEALTDLAA 528
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K+VH G V L L+ Y KC + A +F
Sbjct: 529 GKQVHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIF 568
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 70 FDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
D AD F+ ++ P + N ++RG+ + +L +A Y M+ G PDRF FP
Sbjct: 70 MDEAAD-----AFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFP 124
Query: 130 SLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE-------- 178
+ K CA + + H+ IK GL +D + N+L+ +Y+ + +
Sbjct: 125 VVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPAR 184
Query: 179 --------------------AIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRV 217
A+ F M + V ++V ++ L A L + +
Sbjct: 185 DIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREI 244
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
H G V++ T+L+D YCKC V A ++F KM + WN
Sbjct: 245 HGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWN 292
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM--IVQGLIPDRFMFPSLFKSCAD- 137
VF + I + N++V GY + + A + EM +Q + +L C +
Sbjct: 177 VFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLES 236
Query: 138 -IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-CL-- 173
+ + +++H AI+ GL D + +L++MY C W C+
Sbjct: 237 ALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIG 296
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
++P +A F +M ++ + VT +N+LTA A+ + VH V F
Sbjct: 297 GYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLP 356
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
HV L+T L++ Y K V + +F K L WNN
Sbjct: 357 HVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNN 394
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCAD 137
+F QI++ T+ + N+++ Y ++ EA + E++ Q L PD F ++ F
Sbjct: 380 IFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGS 439
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
I KQ+HS +K G + + N +++MY+ C +
Sbjct: 440 IRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIG 499
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q A+++F M+ ++PN T V+VLTA
Sbjct: 500 YAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTA 534
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 56/284 (19%)
Query: 26 LDNINNNNINSQYQAHFCLVSLE---KCSTMRELKQIHAQMLRTS-----------LFF- 70
LD ++ C+ L ++ +KQ+HA+ LR L F
Sbjct: 2 LDGAGGRTPSTHPALRHCVALLRLHLAAPSLATVKQLHARALRAGVPPAHPLLAKHLLFH 61
Query: 71 -----DPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
P Y V ++ + +P ++ N+++R + + A + + PD
Sbjct: 62 LASLRAPPLRYAVAVLTRVLPDPDPFSLNTVLRIAASSSRPSLALALHARRLAP---PDT 118
Query: 126 FMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------- 174
+P L ++CA + +++H++A K GLA+ F+ N+L+++Y +C +
Sbjct: 119 HTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDE 178
Query: 175 ----------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
+P+E + IF M N P+ T+V+VLTA A L
Sbjct: 179 IPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALA 238
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+RVH + + G + + L+D Y KC V A +F +M
Sbjct: 239 LGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEM 282
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+LVF +NP+ + N ++RGY + + E+ + +M G+ P++ +P +FKSCA
Sbjct: 65 KLVFHFSNNPSPISWNILIRGYASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAMA 124
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W---- 171
V KQ+H+ +KFGL SD ++ N +IN Y C W
Sbjct: 125 LVLCEGKQVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVM 184
Query: 172 --CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
C++ + I F++M +P+ ++V +L+ A L + VH + G
Sbjct: 185 TACVENVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMV 244
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V L T L+D Y K + A +F +M
Sbjct: 245 LSVHLGTALVDMYGKSGALGYARVVFERM 273
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 31/212 (14%)
Query: 4 PLPLHHQTRTPALSSDNSPLINL--------DNINNNNINSQYQAHFCLVSLEKCSTMRE 55
P P+ +S +SP+ ++ + + N + + C ++L C E
Sbjct: 74 PSPISWNILIRGYASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAMALVLC----E 129
Query: 56 LKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGYTN 102
KQ+HA +++ L F+ C + R VF ++ TI + NS++
Sbjct: 130 GKQVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMTACVE 189
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFL 159
+ ++ +M PD L CA++ + + +HSQ I G+ L
Sbjct: 190 NVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMVLSVHL 249
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
L++MY L A +F RME NV
Sbjct: 250 GTALVDMYGKSGALGY---ARVVFERMEKRNV 278
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
N LI Y+S D P E+I +F +M VKPN +T + + A A L K+VH
Sbjct: 80 NILIRGYASS---DSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAMALVLCEGKQVHAD 136
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ + G S V + +++ Y CK + A +F V+ + WN+
Sbjct: 137 LVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNS 182
>gi|125525852|gb|EAY73966.1| hypothetical protein OsI_01850 [Oryza sativa Indica Group]
Length = 641
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 50/250 (20%)
Query: 59 IHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
+HA +L++ L PC R VF +I +P + +S+V Y+N
Sbjct: 26 LHASLLKSGLLASFRNHLISFYSKCRRPCC---ARRVFDEIPDPCHVSWSSLVTAYSNNG 82
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLI 164
L A +H M +G+ + F P + K D + Q+H+ A+ G SD F+ N L+
Sbjct: 83 LPRSAIQAFHGMRAEGVCCNEFSLPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALV 142
Query: 165 NMYSSCWCL-----------------------------DQPDEAIKIFYRMEIENVKPNA 195
MY + DQ +AI++F M ++P
Sbjct: 143 AMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTE 202
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
V+ A +R++ ++VH V G+ V L+D Y K V A +F K
Sbjct: 203 FGFSCVVNACTGSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRVDIASLIFEK 262
Query: 256 M----LFPWN 261
M + WN
Sbjct: 263 MPDSDVVSWN 272
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 30 NNNNINSQYQAHFCLVSL---EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+ NI + Q H +V + + T L ++ +M R + L+F ++
Sbjct: 214 GSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRVDI---------ASLIFEKMP 264
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + + N+++ G H A +M GL+P+ F S+ K+CA + +Q
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFTLSSILKACAGTGAFDLGRQ 324
Query: 144 LHSQAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQ 175
+H IK SD ++ L++MY S C +
Sbjct: 325 IHGFMIKVNADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+ +FY + E + N TL VL + A T ++VH ++ GF +
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLTAVLKSTASLEAASTTRQVHALAEKIGFIFDAHVVNG 444
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D+Y KC +S A +F
Sbjct: 445 LIDSYWKCSCLSDANRVF 462
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + + + CN+++ G ++ H EA ++E+ +GL +R ++ KS A +
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLTAVLKSTASL 417
Query: 139 YVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
+Q+H+ A K G D+ + N LI+ Y C CL + +
Sbjct: 418 EAASTTRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D RL F I + + ++ Y N + +AF + ++ ++P+ +
Sbjct: 307 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
S+ ++C ++ KQ+H+ AIK G SD F+ N L++ Y+ C +D
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR 426
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA+ +F M+ + VT +VL A A +R +
Sbjct: 427 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 486
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+H +++S F + + +L+D Y KC ++ A +F ++ WN
Sbjct: 487 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 535
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 31/202 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + ++V+ + + A + + +G ++F+ ++ K +
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL-- 173
+ +HS A K G ++F+ + LI+ YS C W
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
D P+ A ++F +M + KPN L +VL A + K +H C ++
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLND 295
Query: 228 SHVELKTTLMDAYCKCKFVSRA 249
+ + L+D Y KC + A
Sbjct: 296 TEPHVGGALLDMYAKCGDIKDA 317
>gi|115471815|ref|NP_001059506.1| Os07g0436600 [Oryza sativa Japonica Group]
gi|113611042|dbj|BAF21420.1| Os07g0436600 [Oryza sativa Japonica Group]
gi|125600027|gb|EAZ39603.1| hypothetical protein OsJ_24038 [Oryza sativa Japonica Group]
Length = 514
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 34/240 (14%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
S M H S++F H R VF + + + ++V G+T + +A
Sbjct: 192 SGMCGAGDFHVGSSLVSMYFRVGQPGHARRVFDGMEQRNVVSWTAMVGGFTESGMFEDAV 251
Query: 111 LFYHEMIVQG-LIPDRFMFPSLF---KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+ M V G ++P+R S+ ++ D+ KQ+H A++ GL+ + L+N LI M
Sbjct: 252 DAFRAMWVIGAVLPNRIALISVLSAVEALTDLAAGKQVHGFAVRMGLSGEVSLNNALIVM 311
Query: 167 YSSC--------------WCLD---------------QPDEAIKIFYRMEIENVKPNAVT 197
Y C WC D + EA+ +F +M I VKP+++T
Sbjct: 312 YVKCGVLWYARQIFDDGRWCKDVISWCSMIQGYGLHGKGAEAVALFDQMHISGVKPDSIT 371
Query: 198 LVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ VL+A +RA + + ++ + V + G E+ ++D + +++A D M
Sbjct: 372 GLGVLSACSRAGLVFKGLEIYNSLVKDYGVHPTEEMSACIVDLLGRSGMINQALDFIKSM 431
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 40/220 (18%)
Query: 68 LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
L+ + R +F ++ T T N+++ ++ + + M+ G +PDRF
Sbjct: 112 LYLRAASPGLARRLFDEMPARTASTYNTLI---SHSPPGVDVWPVVRHMVEDGCVPDRFT 168
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGL--ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
S+ +C ++LH A+K G+ A D + ++L++MY + + QP A ++F
Sbjct: 169 VSSILPACESELRGRELHCFALKSGMCGAGDFHVGSSLVSMY---FRVGQPGHARRVFDG 225
Query: 186 MEIENVK--------------------------------PNAVTLVNVLTARARARDLRT 213
ME NV PN + L++VL+A DL
Sbjct: 226 MEQRNVVSWTAMVGGFTESGMFEDAVDAFRAMWVIGAVLPNRIALISVLSAVEALTDLAA 285
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K+VH G V L L+ Y KC + A +F
Sbjct: 286 GKQVHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIF 325
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 51 STMRELKQIHAQMLRTSLFFDP--------------C-ADYHVRLVFSQISNPTIYTCNS 95
+++ + +Q HA +L+T LF D C AD LV + P +++ ++
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD--ATLVLDLVPEPNVFSFST 84
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFG 152
++ ++ + H A + +M+ +GL+PD + PS K+CA + K Q+H A G
Sbjct: 85 LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144
Query: 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
SDSF+ ++L++MY C +Q +A ++F RM +P+ V+ ++ A AR +
Sbjct: 145 FDSDSFVQSSLVHMYIKC---NQIRDAHRVFDRM----FEPDVVSWSALVAAYARQGCVD 197
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
KR+ + +SG ++ ++ + S A +F+ M
Sbjct: 198 EAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 49 KCSTMRELKQIHAQM----------LRTSLFFDPCADYHVRLVFSQISN----PTIYTCN 94
KC+ +R+ ++ +M L + C D RL FS++ + P + + N
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRL-FSEMGDSGVQPNLISWN 219
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKF 151
++ G+ + L+ EA L + +M ++G PD S+ + D+ + +H IK
Sbjct: 220 GMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQ 279
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME 187
GL SD + + LI+MY C C E ++F +M+
Sbjct: 280 GLVSDKCVSSALIDMYGKCSC---TSEMSQVFDQMD 312
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 49 KCSTMRELKQIHAQMLR------TSLFFDPCADYHVR---LVFSQISNP----TIYTCNS 95
KCS E+ Q+ QM + F + V +F Q+ + + + S
Sbjct: 297 KCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTS 356
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
++ + EA + EM + G+ P+ P L +C +I K H +++ G
Sbjct: 357 MIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416
Query: 153 LASDSFLHNTLINMYSSCW-------CLD---------------------QPDEAIKIFY 184
+++D ++ + LI+MY+ C C D + EA++IF
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476
Query: 185 RMEIENVKPNAVTLVNVLTA 204
M+ KP+ ++ VL+A
Sbjct: 477 LMQRSGQKPDIISFTCVLSA 496
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 131 LFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-------LD---QPD--- 177
L + A + +Q H+ +K GL +D+ L L++ Y++ C LD +P+
Sbjct: 22 LNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFS 81
Query: 178 ---------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
A+ F +M + P+ L + + A A L+ ++VH
Sbjct: 82 FSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
SGF S ++++L+ Y KC + A +F +M P + W A+ A QG V
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP--DVVSWSALVAAYARQGCV 196
>gi|125558137|gb|EAZ03673.1| hypothetical protein OsI_25810 [Oryza sativa Indica Group]
Length = 514
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 34/240 (14%)
Query: 51 STMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
S M H S++F H R VF + + + ++V G+T + +A
Sbjct: 192 SGMCGAGDFHVGSSLVSMYFRVGQPGHARRVFDGMEQRNVVSWTAMVGGFTESGMFEDAV 251
Query: 111 LFYHEMIVQG-LIPDRFMFPSLF---KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+ M V G ++P+R S+ ++ D+ KQ+H A++ GL+ + L+N LI M
Sbjct: 252 DAFRAMWVIGAVLPNRIALISVLSAVEALTDLAAGKQVHGFAVRMGLSGEVSLNNALIVM 311
Query: 167 YSSC--------------WCLD---------------QPDEAIKIFYRMEIENVKPNAVT 197
Y C WC D + EA+ +F +M I VKP+++T
Sbjct: 312 YVKCGVLWYARQIFDDGRWCKDVISWCSMIQGYGLHGKGAEAVALFDQMHISGVKPDSIT 371
Query: 198 LVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ VL+A +RA + + ++ + V + G E+ ++D + +++A D M
Sbjct: 372 GLGVLSACSRAGLVFKGLEIYNSLVKDYGVHPTEEMSACIVDLLGRSGMINQALDFIKSM 431
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 40/220 (18%)
Query: 68 LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
L+ + R +F ++ T T N+++ ++ + + M+ G +PDRF
Sbjct: 112 LYLRAASPGLARRLFDEMPARTASTYNTLI---SHSPPGVDVWPVVRHMVEDGCVPDRFT 168
Query: 128 FPSLFKSCADIYVEKQLHSQAIKFGL--ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
S+ +C ++LH A+K G+ A D + ++L++MY + + QP A ++F
Sbjct: 169 VSSILPACESELRGRELHCFALKSGMCGAGDFHVGSSLVSMY---FRVGQPGHARRVFDG 225
Query: 186 MEIENVK--------------------------------PNAVTLVNVLTARARARDLRT 213
ME NV PN + L++VL+A DL
Sbjct: 226 MEQRNVVSWTAMVGGFTESGMFEDAVDAFRAMWVIGAVLPNRIALISVLSAVEALTDLAA 285
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K+VH G V L L+ Y KC + A +F
Sbjct: 286 GKQVHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIF 325
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D RL F I + + ++ Y N + +AF + ++ ++P+ +
Sbjct: 288 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 347
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
S+ ++C ++ KQ+H+ AIK G SD F+ N L++ Y+ C +D
Sbjct: 348 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR 407
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA+ +F M+ + VT +VL A A +R +
Sbjct: 408 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 467
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+H +++S F + + +L+D Y KC ++ A +F ++ WN
Sbjct: 468 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 516
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 34/209 (16%)
Query: 81 VFSQISNPT--IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
VF IS PT +Y NSI+R T+ L +A +Y EM + L PD F FPS+ SCA
Sbjct: 76 VFRSIS-PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARI 134
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
D+ + +H A++ G SD ++ N LI+MYS LD
Sbjct: 135 LDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLI 194
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
++A+ ++++ + + P+ T+ +VL A ++ VH +++ G
Sbjct: 195 SGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIA 254
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + L+ Y K + + A +F KM
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKM 283
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R VF ++SN + NS++ GY + +A YH+ + G++PD F S+ +C
Sbjct: 174 NARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG 233
Query: 137 DIYVEKQ---LHSQAIKFGLASDSFLHNTLINMY--------------------SSCW-- 171
+ K+ +H K G+A D + N L++MY S W
Sbjct: 234 SLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNT 293
Query: 172 --C----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C L + + ++K+F M I+ P+ +++ + + A ++ DL+ K VHK + SG
Sbjct: 294 MICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSG 352
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
F L+D Y KC + A ++F
Sbjct: 353 FECDTVACNILIDMYAKCGDLLAAQEVF 380
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VFS+++ T N+++ GY H + + +MI G +PD S ++C
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACG 333
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------CLDQP---- 176
D+ V K +H I G D+ N LI+MY+ C C D
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
E ++ F M++E KP++VT V +L+ ++ D+ + +H V + G
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
F + + + +L+D Y KC + +F M + WN
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNT 493
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 39/222 (17%)
Query: 70 FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D + VF T NS++ GYT + E + M ++ PD F
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTF 425
Query: 129 P---SLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY- 184
S+F ADI + +H IKFG ++ + N+L+++Y+ C + D+ +K+F
Sbjct: 426 VLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKC---GEMDDLLKVFSY 482
Query: 185 ------------------------------RMEIENVKPNAVTLVNVLTARARARDLRTV 214
M E + P+ T++ +L + R
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K +H + +SGF S+V + L++ Y KC + +F M
Sbjct: 543 KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYM 584
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS +S I + N+++ + + F +EM +GL+PD + C+ + V
Sbjct: 479 VFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAV 538
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+Q +H K G S+ + N LI MYS C L+ IK+F M+ ++V
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLEN---CIKVFKYMKEKDV 589
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 33/232 (14%)
Query: 55 ELKQIHAQMLRTSLF---------FDPCA-----DYHVRLVFSQISNPTIYTCNSIVRGY 100
+L+QIH Q+ R ++F C+ DY + +F + Y N+++RG
Sbjct: 57 KLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAIS-IFQRFELKNSYLFNALIRGL 115
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDS 157
+ + F+ M+ + PDR FP + KS A + V + LH +KFGL DS
Sbjct: 116 AENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDS 175
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT-ARARARDLRTVKR 216
F+ +L++MY +++ A+K+F E+VK +V + NVL R DL
Sbjct: 176 FVRVSLVDMYVK---VEELGSALKVFDESP-ESVKNGSVLIWNVLIHGYCRMGDLVKATE 231
Query: 217 VHKCV--DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + ++G W+ +L++ + K + RA +LFVKM P N W
Sbjct: 232 LFDSMPKKDTGSWN------SLINGFMKMGDMGRAKELFVKM--PEKNVVSW 275
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
T++N +S P++A++ F+ M E +PN T+V+ L+A A+ L R+H +
Sbjct: 277 TMVNGFSQN---GDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYL 333
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+GF ++ + T L+D Y KC + A +F
Sbjct: 334 SGNGFKLNLVIGTALVDMYAKCGNIEHAEKVF 365
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 25/153 (16%)
Query: 41 HFCLVSLE-KCSTMRELKQIHAQMLRTSLFFDP----------CADY-----HVRLVFSQ 84
H L LE C +++ QIH Q++ LF P C Y H ++
Sbjct: 54 HQLLQKLELSCINIKQFNQIHTQLIVLGLFQHPLAAGRYIKKLCNTYFNLLSHCVYLYDY 113
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAF----LFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
I P + CN+I+R + + L+++ F +Y +MI + ++P+R+ FP L K CADI
Sbjct: 114 IEQPDAFICNTIIRCFVS--LNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVKVCADIGS 171
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSC 170
K+ H+ +KFG D+++ N+L++MYS+C
Sbjct: 172 LKEGQKAHACVVKFGFEFDAYVRNSLLHMYSAC 204
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ ++ NS++ GY A + M + ++ M + ++
Sbjct: 242 RELFDEMPERDAFSWNSMISGYVGAGDVEAAKKLFDNMPSRDVVSWNCMIDG-YAKIRNV 300
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVT 197
V + L +Q + S N ++ +Y C E +K+F RM E ++PN +
Sbjct: 301 SVARWLFNQMPFRNIVS----WNIMLALYLKC---KNYGECLKLFDRMIEERELRPNKAS 353
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM- 256
L++VLTA A R L K +H + ++ S L T L+ Y KC + A +F KM
Sbjct: 354 LMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTALLTMYAKCGMMDFARHIFTKMP 413
Query: 257 ---LFPWNN 262
+ WN+
Sbjct: 414 HKSVVSWNS 422
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 36/165 (21%)
Query: 134 SCADIYVEKQLHSQAIKFGL-----ASDSFLH---NTLINMYSSCWCL----DQPDE--- 178
SC +I Q+H+Q I GL A+ ++ NT N+ S C L +QPD
Sbjct: 63 SCINIKQFNQIHTQLIVLGLFQHPLAAGRYIKKLCNTYFNLLSHCVYLYDYIEQPDAFIC 122
Query: 179 ----------------AIKIFY-RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
A++ +Y +M + V PN T ++ A L+ ++ H CV
Sbjct: 123 NTIIRCFVSLNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVKVCADIGSLKEGQKAHACV 182
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDL----FVKMLFPWNN 262
+ GF ++ +L+ Y C V A L FV L WN+
Sbjct: 183 VKFGFEFDAYVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNS 227
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMRELKQIHAQM-----LRTSLFFDPC----------ADYHVRLVFSQISNPTIY 91
+ +CS++R KQI Q+ LR LF + A Y ++ S S + +
Sbjct: 13 ISRCSSLRVFKQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSIRSVLSSF 72
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
+ N+++ Y + Y + G PD F FP +FK+C I KQ+H
Sbjct: 73 SYNTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTV 132
Query: 149 IKFGLASDSFLHNTLINMYS-------SCWCLDQP---------------------DEAI 180
K G D ++ N+L++ Y +C DQ EA+
Sbjct: 133 TKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEAL 192
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
F +M++E PN T V L + R L K +H + + +E L+D Y
Sbjct: 193 DTFSKMDVE---PNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMY 249
Query: 241 CKCKFVSRAWDLFVKM 256
KC+ +S A +F ++
Sbjct: 250 VKCEQLSDAMTVFGEL 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 52/262 (19%)
Query: 49 KCSTMRELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNS 95
K S +RE KQIH + + F+ C + + VF Q+ + +
Sbjct: 118 KFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTG 177
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQ--------------------------GLIPDRFMFP 129
I+ G+T L+ EA + +M V+ GLI R
Sbjct: 178 IITGFTRTGLYKEALDTFSKMDVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLI 237
Query: 130 SLFKSCA--DIYVE-KQLHSQAIKFG--LASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
SL A D+YV+ +QL FG D N++I+ C ++ +EAI++F
Sbjct: 238 SLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHC---ERSNEAIELFS 294
Query: 185 RMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
M+ + +KP+ L +VL+A A + + VH+ V +G + T ++D Y KC
Sbjct: 295 MMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKC 354
Query: 244 KFVSRAWDLF----VKMLFPWN 261
++ A +F K +F WN
Sbjct: 355 GYIETALKIFNGIRRKNVFTWN 376
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 116/275 (42%), Gaps = 55/275 (20%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV------------RLVFS 83
S+ CL LE+ ST L Q A +L++ L +P + + S
Sbjct: 27 SRAAEQHCLRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRLFAASASAAPALLEPLVS 86
Query: 84 QISNPTI----YTCNSIVRGYTNK---NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ P++ + N+++R + + A F+ M+ + P++F FP L KSCA
Sbjct: 87 SLLGPSLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCA 146
Query: 137 DI----YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-----------QPDE--- 178
+ V Q H+ A+KFG A+D ++ NTLI+MY SC+ P E
Sbjct: 147 ALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMY-SCFGAGFLGDARNVFERMPRESAV 205
Query: 179 -----------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
A+ +F M++ V+P+ VT++ VL A A L + V + V
Sbjct: 206 TWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFV 265
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ G V L L+D KC V A +F M
Sbjct: 266 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 300
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 57/268 (21%)
Query: 50 CSTMRELKQIHAQMLRTS------------LFFDPCADYHVRL-VFSQISNPTIYTCNSI 96
CST+ LKQIHA++ T +F + + L VF +I P + N++
Sbjct: 22 CSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTM 81
Query: 97 VRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFG 152
+RG+ N H H A F+ M + PD F F + K A + + KQLH KFG
Sbjct: 82 IRGFGNSTTHSHNAIHFFKRMQLAHR-PDNFTFSFILKIIARLRFVNLGKQLHCSLFKFG 140
Query: 153 LASDSFLHNTLINMYSSCWCLD----------QPD------------------EAIKIFY 184
+ +++ N+LI+MY ++ QP+ EAI +F
Sbjct: 141 FENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFT 200
Query: 185 RMEIE-----NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES--GFWSHVELKTTLM 237
+M + ++P+ TLV L+A L ++VH V + F + + L+
Sbjct: 201 KMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVNSFGESISVFNALV 260
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWN 261
D Y KC V A++ F M + WN
Sbjct: 261 DMYAKCGAVEEAYETFSNMKRKNVVSWN 288
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 41/245 (16%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C + R++F + + T+ + NS++ GY A L + +M+ +G+ P
Sbjct: 175 MYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVT 234
Query: 128 FPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
+CAD+ K +H + L SD + N+LI+MYS C +D
Sbjct: 235 VMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR 294
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA+ F M+ N+KP++ T+V+V+ A A R K
Sbjct: 295 NKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKW 354
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATV 272
+H V +V + T L+D Y KC + A LF M + WN AM
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWN-----AMIDGY 409
Query: 273 GPQGL 277
G GL
Sbjct: 410 GTHGL 414
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F ++ + N+++ GY A + M +G PD S+ + AD
Sbjct: 87 MFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRL 146
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ + +H ++ G S + L++MYS C +
Sbjct: 147 LRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDG 206
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ A+ IF +M E V+P VT++ L A A DL K VHK VD+ S
Sbjct: 207 YVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSD 266
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
V + +L+ Y KCK V A D+F K L WN
Sbjct: 267 VSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWN 302
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFG 152
+++GY + A F+ M + P + F L K C D + K++H I G
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 153 LASDSFLHNTLINMYSSCWCLDQ--------PDE--------------------AIKIFY 184
+ + F ++NMY+ C ++ P+ A+ +
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
RM E +P+++T+V++L A A R LR VH V +GF S V + T L+D Y KC
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180
Query: 245 FVSRAWDLFVKM----LFPWNN 262
VS A +F M + WN+
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNS 202
>gi|359474850|ref|XP_002277741.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
gi|297744624|emb|CBI37886.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 35/215 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF Q+ NP + +C++IV G+ L EA + +++ G++P+ +L ++C +
Sbjct: 149 VFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVALES 208
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSS--------------------CW------ 171
+ +H +K L D ++N++++MYSS W
Sbjct: 209 RRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTMINL 268
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
CL+ +A+ +F +M + + V ++N+++A A DL+ + +H GF S
Sbjct: 269 LVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGFGSE 328
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
+ L +++ Y KC + + +F K L W
Sbjct: 329 LPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSW 363
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 53/267 (19%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYT-------CNSIV 97
V+LE + R + IH +++ SL D + V ++S + + T C ++
Sbjct: 204 VALE---SRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVI 260
Query: 98 RGYTNKNL------HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
T NL +A + + +M G+ D + +L +CA D+ +++H+QA
Sbjct: 261 SWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQA 320
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PDEAI 180
I G S+ L N++I MYS C LD P EA+
Sbjct: 321 IVCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREAL 380
Query: 181 KIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
K+ +M E + +++ L+ VL+A L +++H ESGF + ++ +L+ A
Sbjct: 381 KLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGFPRYRLVQNSLISA 440
Query: 240 YCKCKFVSRAWDLFVKM-----LFPWN 261
Y KC V A+++F +M + WN
Sbjct: 441 YSKCGDVEPAYNVFGQMGYIRDIVSWN 467
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + + ++ GY ++ + +M + L+P F + S A D
Sbjct: 48 LFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMRISSLVPTSFTMVGVLVSIAGLGD 107
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQP----------- 176
+ + +H +K+GL SD + L+N Y+ C L+ P
Sbjct: 108 PVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAIVSG 167
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+EA+ +F + + PNA T++ ++ A R + +H V +
Sbjct: 168 FVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVALESRRLCESIHGMVVKLSLVLD 227
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
V + +++D Y + A +F M
Sbjct: 228 VAVNNSVLDMYSSMLDLDAATRVFEGM 254
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+++++F +M I ++ P + T+V VL + A D + VH + + G S + T L+
Sbjct: 75 KSMELFSQMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALL 134
Query: 238 DAYCKCKFVSRAWDLFVKMLFP 259
+AY KC V ++ +F ++ P
Sbjct: 135 NAYAKCGNVVDSYRVFEQLENP 156
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + S+V GYT H E+ + +M + G+ PD+F+ S+ +CA++ +
Sbjct: 471 VFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTL 530
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
KQ+HS IK GL S ++N+L+ MY+ C CLD D IF M + +V +T
Sbjct: 531 LEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDAD---AIFVSMHVRDV----IT 583
Query: 198 LVNVLTARAR 207
++ AR
Sbjct: 584 WTALIVGYAR 593
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 51/302 (16%)
Query: 11 TRTPALSSDNSPLINLDNINNNNINSQYQAHF----CLVSLEKCSTMRELKQIHAQMLR- 65
+ +P+L+ D S + + +NI YQ+ F L L K + + +++ +ML+
Sbjct: 86 SASPSLNED-SDDTGVQQVVMHNIADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQR 144
Query: 66 --------TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
S + + R +F+ S+ + T +S++ GY EAF + M
Sbjct: 145 DEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMR 204
Query: 118 VQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
++G P ++ S+ + C+ I + +H +K G S+ ++ L++MY+ C +
Sbjct: 205 LEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHIS 264
Query: 175 QPD------------------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ + +AI+ F M E V+ N T ++LTA
Sbjct: 265 EAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTA 324
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPW 260
+ ++VH C+ +GF + +++ L+D Y KC + A + M + W
Sbjct: 325 CSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSW 384
Query: 261 NN 262
N+
Sbjct: 385 NS 386
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKF 151
++V GY H+A F+ M +G+ ++F FPS+ +C+ + +Q+H ++
Sbjct: 285 AMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRN 344
Query: 152 GLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIF 183
G ++++ + L++MY+ C L +EAI +F
Sbjct: 345 GFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLF 404
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+M N+K + T +VL R K VH V ++GF ++ + L+D Y K
Sbjct: 405 KKMHARNMKIDHYTFPSVLNCCIVGR--IDGKSVHCLVIKTGFENYKLVSNALVDMYAKT 462
Query: 244 KFVSRAWDLFVKML 257
+ ++ A+ +F KM
Sbjct: 463 EDLNCAYAVFEKMF 476
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 42/242 (17%)
Query: 57 KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
+Q+H ++R + C D + V + + + + NS++ G
Sbjct: 335 EQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRH 394
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE-KQLHSQAIKFGLASDSFLHNT 162
EA L + +M + + D + FPS+ C ++ K +H IK G + + N
Sbjct: 395 GFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNA 454
Query: 163 LINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVKPN 194
L++MY+ L+ +E++K F M I V P+
Sbjct: 455 LVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPD 514
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
+ ++L+A A L K+VH + G S + + +L+ Y KC + A +FV
Sbjct: 515 QFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFV 574
Query: 255 KM 256
M
Sbjct: 575 SM 576
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA +F RM +E KP+ TL ++L + ++ + +H V ++GF S+V + L+
Sbjct: 195 EAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLV 254
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSAT 271
D Y KC+ +S A LF + F N+ W T
Sbjct: 255 DMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVT 288
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 31/244 (12%)
Query: 33 NINSQY--QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCAD--------------- 75
++ S+Y + L L++C TM +KQI + + + FDP A
Sbjct: 4 SVGSKYLKSSRRVLSLLDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDI 63
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
H L+F + T + N+++R +T+K Y M+ G +P+ + F L ++C
Sbjct: 64 SHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQAC 123
Query: 136 A---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192
A D+ LH+QA++ G + F+ N L+++Y+SC C+D R+ +V
Sbjct: 124 AQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSA-------RRLFDGSVN 176
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
+ VT V+ A++ + +++ + E S + ++ Y + A +L
Sbjct: 177 RDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSW----SAMITGYAQIGLFREALEL 232
Query: 253 FVKM 256
F M
Sbjct: 233 FNDM 236
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + ++++ GY L EA +++M + G P+ +CA +
Sbjct: 199 RQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFL 258
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----DE------------- 178
Q +H+ + + D L LI+MY+ C C++ DE
Sbjct: 259 GALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLI 318
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
AI++F RM+ E V PN VT + +L+A +R + R+ K
Sbjct: 319 SGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFK 370
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M+I +PN +V LTA A L + +H VD + L T L+
Sbjct: 228 EALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALI 287
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI------SGPC 291
D Y KC V A +F +ML + +A ++ + G +TA ++ G C
Sbjct: 288 DMYAKCGCVETACRVFDEML----DRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVC 343
Query: 292 PKKAHKLFFFSMLKKV 307
P + + S +V
Sbjct: 344 PNEVTFICLLSACSRV 359
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 79/287 (27%)
Query: 53 MRELKQIHAQMLRTSLFFD----------PCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
M +LKQIHA LR L P Y L F QI P++Y N ++ +++
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTL-FDQIPKPSVYLYNKFIQTFSS 59
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
H +L Y +M QG P+++ F LF +CA ++Y + LHS K G ASD F
Sbjct: 60 IGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFA 119
Query: 160 HNTLINMYSSCWCL-------------DQP---------------DEAIKIFYRMEIENV 191
L++MY+ L D P + A+++F +M + NV
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV 179
Query: 192 --------------------------------KPNAVTLVNVLTARARARDLRTVKRVHK 219
KPN V++ +VL A ++ L KR+
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
+GF+ + + +++ + +C + A +F ++ L WN
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWN 286
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 99/247 (40%), Gaps = 66/247 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
VF+ I P N+++RGY + A Y MI GL+P+ + FP L KSCA
Sbjct: 22 VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81
Query: 137 ------------------DIYVEKQLHSQAIKFGLASDS------------FLHNTLINM 166
D+YV L S + G D+ + LI
Sbjct: 82 FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141
Query: 167 YSSCWCLDQPDE----------------------------AIKIFYRMEIENVKPNAVTL 198
Y+S + E A+++F M NV+P+ T+
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----V 254
V VL+A A++R + ++VH +D+ GF S++++ L+D Y KC V A LF
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC 261
Query: 255 KMLFPWN 261
K + WN
Sbjct: 262 KDVVSWN 268
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + EM+ + PD ++ +CA
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + +Q+HS G S+ + N LI++YS C ++
Sbjct: 214 VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGG 273
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT+V++L A A + + +H +D+
Sbjct: 274 YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVT 333
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ L+T+L+D Y KC + A +F ML
Sbjct: 334 NAPSLRTSLIDMYAKCGDIEAAHQVFNSML 363
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 45/182 (24%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F +S + + N+++ GYT+ NL+ EA L + EM+ G P+ S+ +CA
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y++K+L + + L +LI+MY+ C ++
Sbjct: 315 IDIGRWIHVYIDKKLKD------VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 368
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ + +F RM ++P+ +T V +L+A + + L + + K +
Sbjct: 369 SWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSM 428
Query: 222 DE 223
+
Sbjct: 429 TQ 430
>gi|297740419|emb|CBI30601.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 46/285 (16%)
Query: 13 TPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELK---QIHAQMLRTSLF 69
P S D L+ I+ N ++ L+S +C T + L+ QIHA + ++ L
Sbjct: 21 VPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLS--QCCTTKSLRPGLQIHAHITKSGLS 78
Query: 70 FDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
DP H+ R + + S P + + ++++ GY L A + +HEM
Sbjct: 79 DDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 138
Query: 117 IVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+ G+ + F F S+ K+C+ D+ + KQ+H + G D F+ NTL+ MY+ C
Sbjct: 139 HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC--- 195
Query: 174 DQPDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGF-WSHVE 231
D+ ++ ++F + NV NA L + L RD K +H + + G+ W
Sbjct: 196 DEFLDSKRLFDEIPERNVVSWNA--LFSCL------RDSSRGKIIHGYLIKLGYDWDPFS 247
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP----WN-------NYGQ 265
L+D Y K ++ A +F K+ P WN YGQ
Sbjct: 248 -ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAAYAQYGQ 291
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 38/256 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQISNPTI 90
LEKC ++ +LKQI +QM+ T L D CA DY ++F+ NP
Sbjct: 57 LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNT-RNPNT 115
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
++ N +RG+ + EA + Y ++ G PD + +P LFK+CA I + ++
Sbjct: 116 FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILG 175
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
+ G SD F+ N +I++ SC LD A K+F + + ++ + +++N
Sbjct: 176 HVLHLGFDSDIFVSNAVIHLLVSCGDLDG---ARKMFDKSCVRDL-VSWNSMIN-----G 226
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+L + +++ + S TT++ Y + + AW LF +M + PWN
Sbjct: 227 YCGNLESARKLFDSMTNKTMVSW----TTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 282
Query: 263 YGQWAMSATVGPQGLV 278
+ A G + L
Sbjct: 283 MIGGYVHANRGKEALA 298
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 46/208 (22%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++N T+ + ++V GY L A+ + EM PD+ + P
Sbjct: 234 ARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEM------PDKDVVP-------- 279
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
N +I Y ++ EA+ +F M+ N+ P+ VT
Sbjct: 280 ----------------------WNAMIGGYVHA---NRGKEALALFNEMQAMNINPDEVT 314
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+V+ L+A ++ L +H +++ +V L T L+D Y KC +++A +F ++
Sbjct: 315 MVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL- 373
Query: 258 FPWNNYGQWAMSATVGPQGLVGRHSTAH 285
P N W +A + L H AH
Sbjct: 374 -PGRNSLTW--TAIISGLAL---HGNAH 395
>gi|224058585|ref|XP_002299553.1| predicted protein [Populus trichocarpa]
gi|222846811|gb|EEE84358.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS---- 86
N+N + CL LE C E Q+HA++ + +P A + L +S IS
Sbjct: 16 NHNQFQSFSLKSCLSLLEICKFTTEFAQLHARLTKLGFIKNPLALTRL-LCYSSISQYAN 74
Query: 87 ------------NPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFK 133
NP + N ++RGY + A LFY + P++ FP + K
Sbjct: 75 INYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGPNKLTFPFVLK 134
Query: 134 SCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+C+ + KQ+H K GL+ D F+ N+LINMYSSC + A ++F +++ +
Sbjct: 135 ACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLINMYSSCGLI---GFACQVFNKIDDLD 191
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
V V+ ++++ DL V+ + D S V L+D Y K + A
Sbjct: 192 V----VSWNSMISGLV---DLGFVEEGKQMFDRMSKRSLVTW-NCLIDGYVKVGLLMEAR 243
Query: 251 DLFVKML 257
+LF +M+
Sbjct: 244 ELFDQMV 250
>gi|356540832|ref|XP_003538888.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g51320-like [Glycine max]
Length = 560
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 79/301 (26%)
Query: 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------------CADYHVRLVFSQIS 86
+HF + C R L Q+ A ++ +SLF +P C + L+F I+
Sbjct: 58 SHFDALLQNSCRNARHLLQMQALLVTSSLFRNPFLARTVLSRASHLCNFAYTLLIFRTIN 117
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
+ + N++++ Y N + EA +FY ++ G P+ + F L SCA I K+
Sbjct: 118 SLGTFCVNTVIKSYCNSHAPREAIVFYFRSLMCGFFPNSYTFVPLVASCAKMGCIDSGKE 177
Query: 144 LHSQAIKFG-------------------------------LASDSFLHNTLIN------- 165
H+QA K G L+ D N++I+
Sbjct: 178 CHAQATKNGVDSVLPVQNSLIHMYACCGDVQLARVLFDGMLSRDLVSRNSIIDGIMMVGE 237
Query: 166 ---------------------MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
M S P A+K+F M ++ +A T+V V TA
Sbjct: 238 LNAAHRLLNEMPDRNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGDARTMVCVATA 297
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPW 260
R+ L+ K V+ + S + L T L+D YCKC+ V A +F +M L W
Sbjct: 298 CGRSGRLKEGKSVYGSIVRMLVRSSLILDTVLIDMYCKCRKVEDARRVFERMGERNLVSW 357
Query: 261 N 261
N
Sbjct: 358 N 358
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + + + NS++ GY + L + + +M++ G+ D S+ C++
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + + LH AIK + L+N L++MYS L+
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D ++++F+ ME E + P+ T+ +L A A L K VH + E+
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKM 383
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S + + LMD Y KC + A +F VK + WN
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWN 422
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 35/228 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + ++ + S++ GY + L + +HEM +G+ PD F ++ +CA +
Sbjct: 308 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGL 367
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
K +H+ + + SD F+ N L++MY+ C +
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P+EA+ +F M+ N KPN++T+ +L A A L + +H + +GF
Sbjct: 428 YSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLD 486
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQG 276
+ L+D Y KC + A LF + P + W M A G G
Sbjct: 487 RHVANALVDMYLKCGALGLARLLFD--MIPEKDLVSWTVMIAGYGMHG 532
>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 121/269 (44%), Gaps = 53/269 (19%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFD------------PCADY-HVRLVFSQIS-NPT 89
L +C+ + L+Q +H ++L L D C D+ RLVF I
Sbjct: 10 LRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRSD 69
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLH 145
+Y NS+V GY+ ++ H+ + ++ + +PD F +P++ K+ + ++ + +H
Sbjct: 70 VYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIH 129
Query: 146 SQAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQPD 177
+ +K G D + ++L+ MY SS + +
Sbjct: 130 TVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAE 189
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+++F RME + +PN+V++ ++A +R L K +H+ + F + + L+
Sbjct: 190 KALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALV 249
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWNN 262
D Y +C F+ A ++F +M L WN+
Sbjct: 250 DMYGRCDFLEMAREVFQQMRRKSLVAWNS 278
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 116/280 (41%), Gaps = 50/280 (17%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNP 88
V++ CS + L K+IH + L+ D + + R VF Q+
Sbjct: 212 VAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRK 271
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
++ NS++RGY + + MI++G P + S+ +C+ ++ K +H
Sbjct: 272 SLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVH 331
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC---------WCLDQPD------------------- 177
I+ + +D +++ +LI++Y C + Q D
Sbjct: 332 GYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWF 391
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ ++ +M V+P+ VT +VL+ ++ L K++H + ES + L + L+
Sbjct: 392 KAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALL 451
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQG 276
D Y KC V A +F + P + W M + G G
Sbjct: 452 DMYSKCGNVKEASRIFNSI--PKKDVVSWTVMISAYGSHG 489
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 6 PLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEK-CSTMRELKQIHAQML 64
P Q +S N+P ++L+ H L LE+ C+ +++ QIH Q+
Sbjct: 36 PTPQQITQTISNSSNAPTLDLN-------------HPILQKLEQSCTNIKQFNQIHTQLT 82
Query: 65 RTSLFFDPCADY--------------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
LF P A H +++ I P + CN+I+R + N N A
Sbjct: 83 VLGLFQHPFAASRYIKKLCACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGAL 142
Query: 111 LFYHE-MIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINM 166
FY+E MI + ++P+ + FP + K CADI ++ +H+ +KFG D F+ N+ I
Sbjct: 143 RFYYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRF 202
Query: 167 YSSC 170
YS C
Sbjct: 203 YSVC 206
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 18/224 (8%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ I+T NS++ GY A + +M + ++ M F D
Sbjct: 243 AREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDG-FARIKD 301
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ + + + + S N ++ +Y C + + ++ F M + P+ +
Sbjct: 302 VSMAAKFFDEMPLRNVVS----WNVMLALYLRC---KKYSDCLRFFDMMVGGDFVPDEAS 354
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
LV+VLTA A + L K VH + ++G + L T L+ Y KC + A ++F KM
Sbjct: 355 LVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKM- 413
Query: 258 FPWNNYGQWAMSATVGPQGLVGRHSTAHQI------SGPCPKKA 295
P + W S +G G+ G A ++ GP P A
Sbjct: 414 -PEKSVVSWN-SMIIG-YGIHGHGDKALEMFREMEKGGPMPNDA 454
>gi|255546351|ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546691|gb|EEF48189.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 48/240 (20%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
C+T+R+L QI+A ++ + L A +H N+I+R YT + +A
Sbjct: 63 CTTLRDLNQIYAHIICSDLLHFYSAPFH---------------WNNIIRSYTRLDAPVKA 107
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINM 166
Y M G++PD + P + K+ I+ + KQL S AI+ GL S+ + + I+
Sbjct: 108 LQVYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSVAIRLGLESNEYCESGFISF 167
Query: 167 YSSCWCL--------DQPD--------------------EAIKIFYRMEIENVKPNAVTL 198
YS + + P+ EAI+IF M P+ VT+
Sbjct: 168 YSKSGDIKNAYKMFEENPERKLGSWNAIIGGLSQGGHAKEAIEIFIEMRKCGFVPDDVTM 227
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFW--SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
V+V++A DL ++HK V + + +++ + +L+D Y KC + A +F M
Sbjct: 228 VSVISACGSLGDLNLAIQLHKYVFHANVFGRTNILVMNSLIDMYGKCGRMDLARRVFCTM 287
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F ++ + + + NS++ GY + L Y +M+ G+ D S+ CA+
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGT 266
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ + K +HS AIK NTL++MYS C LD
Sbjct: 267 LSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ D AI++ +ME E VK + V ++L A AR+ L K VH + + S+
Sbjct: 327 YTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESN 386
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + LMD Y KC + A +F VK + WN
Sbjct: 387 LFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWN 422
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 23/233 (9%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNPTI 90
LV T+ K +H+ ++++ + C D L VF ++ +
Sbjct: 258 LVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 317
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ S++ GYT A +M +G+ D S+ +CA + K +H
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY 377
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK-------IFYRMEIENVKPNAVTLVN 200
+ S+ F+ N L++MY+ C +D + I + I +KP++ T+
Sbjct: 378 IKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMAC 437
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+L A A L K +H + +G+ S + L+D Y KC + A LF
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 22/195 (11%)
Query: 64 LRTSLFFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
L+ + C D R VF + +Y N +V Y E+ + M+ +G+
Sbjct: 138 LKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
Query: 123 PDRFMFPS-LFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
R S LF D D N++I+ Y S ++ ++
Sbjct: 198 GKRPESASELFDKLCD-----------------RDVISWNSMISGYVSNGLTER---GLE 237
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
I+ +M + + T+++VL A + L K VH +S F + TL+D Y
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYS 297
Query: 242 KCKFVSRAWDLFVKM 256
KC + A +F KM
Sbjct: 298 KCGDLDGALRVFEKM 312
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 38/238 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F + + T +S++ GY EA + EM +G P++F + S+ + C+
Sbjct: 90 EARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCS 149
Query: 137 DIYV----EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------- 177
+YV KQ+H+ AIK S++F+ L++MY+ C C+ + PD
Sbjct: 150 -MYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLW 208
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+AI+ F M E ++ N T ++LTA +VH C+
Sbjct: 209 TAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR 268
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNNYGQWAMSATVGPQGL 277
SGF ++V + + L+D Y KC +S A + M WN+ + +G + L
Sbjct: 269 SGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEAL 326
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 53 MRELKQIHAQMLRTSL------------FFDPC-----ADYHVRLVFSQISNPTIYTCNS 95
+ + KQIHA ++T + C A+Y L + N ++T +
Sbjct: 154 LEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDK-RNHVLWT--A 210
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
+V GY+ H+A + +M +G+ ++F FPS+ +C I Q+H ++ G
Sbjct: 211 MVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG 270
Query: 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNA--VTLVNVLTARARAR 209
++ F+ + L++MYS C L A ++ ME+++ V N+ V V
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSN---ARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALS 327
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R + H +DE + S V L+D Y K + A+D+F KM
Sbjct: 328 LFRIMHLRHMKIDEFTYPSLV--NNALVDMYAKRGYFDYAFDVFEKM 372
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 28/130 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++++ + + S+V G + + EA + EM + G+ PD+ + ++
Sbjct: 368 VFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVL-------- 419
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
S L N+L++MY+ C C+ ++A K+F MEI++V +V
Sbjct: 420 ----------------SALDNSLVSMYAKCGCI---EDANKVFDSMEIQDVITWTALIVG 460
Query: 201 VLTARARARD 210
R RD
Sbjct: 461 -YAQNGRGRD 469
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 52/256 (20%)
Query: 58 QIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
Q+HA +LR++ + C D +R +F ++ + N I+ Y
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLD-DMRRLFDEMPERDNVSYNVIIAAYAWN 315
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFP-----SLFKSCADIYVEKQLHSQAIKFGLASDSF 158
+ EM Q L DR + P S+ S D+++ KQ+H+Q + GLAS+
Sbjct: 316 QCAATVLRLFREM--QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDL 373
Query: 159 LHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIEN 190
L N LI+MYS C LD Q +EA+++F M
Sbjct: 374 LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG 433
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
++P+ T +++ A + + +++H + SG+ S V + L+D Y KC + A
Sbjct: 434 LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEAL 493
Query: 251 DLFVKMLFPWNNYGQW 266
F +M P N W
Sbjct: 494 RTFDEM--PERNSISW 507
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHAQ++ L + C + FS S + + +++ GY
Sbjct: 357 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 416
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKFGLASDSFLH 160
H EA + +M GL PDR F S+ K S A I + +QLHS I+ G S F
Sbjct: 417 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 476
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAV 196
+ L++MY+ C CL DEA++ F M E ++ NAV
Sbjct: 477 SVLVDMYAKCGCL---DEALRTFDEMPERNSISWNAV 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 39/243 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ + T N+++ G + + LH +A + M G+ F F S+ A
Sbjct: 189 ARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAG 248
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PDE-------- 178
+ + Q+H+ ++ + F++N+L++ YS C CLD P+
Sbjct: 249 MAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVI 308
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+++F M+ + +L+ D+ K++H + G
Sbjct: 309 IAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGL 368
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLV--GRHSTA 284
S L L+D Y KC + A F N + A+S T G V G+H A
Sbjct: 369 ASEDLLGNALIDMYSKCGMLDAAKSNFS------NRSEKSAISWTALITGYVQNGQHEEA 422
Query: 285 HQI 287
Q+
Sbjct: 423 LQL 425
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F M E V P+ VT+ VL TV +H + G +HV + TL+
Sbjct: 123 DALSLFRAMLGEGVIPDRVTVTTVLNLPGC-----TVPSLHPFAIKFGLDTHVFVCNTLL 177
Query: 238 DAYCKCKFVSRAWDLFVKM 256
DAYCK ++ A +F++M
Sbjct: 178 DAYCKHGLLAAARRVFLEM 196
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 60/253 (23%)
Query: 47 LEKCSTMRELKQIHAQM----------LRTSLF------FDPCADYHVRLVFSQISNPTI 90
L C TM++ QI+A + L T+LF + +H +F+QI+NP I
Sbjct: 21 LSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQITNPDI 80
Query: 91 YTCNSIVRGYTNKNLH---HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK----- 142
+ N+I++ Y+ +H F + M+ ++PD F FP L K+CA++ +
Sbjct: 81 FLWNAIIKAYSQ--IHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQFGF 138
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------DEA----------------- 179
Q+H ++ G SD F++N L+N Y C D DE+
Sbjct: 139 QVHCHVLRNGFGSDVFVNNALLNFY--CGFGDVVNAYKVFDESFVRDCVSFNTMINGFAR 196
Query: 180 -------IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESG-FWSHV 230
++F M V+P+ T V +L+ + D R ++VH V E G F +V
Sbjct: 197 KGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNV 256
Query: 231 ELKTTLMDAYCKC 243
L L+D Y KC
Sbjct: 257 LLVNKLVDMYAKC 269
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK- 219
+I+ YS C EA+++F ++E +KP+ V +V L+A AR L +R+H+
Sbjct: 324 TAMISGYSHAGCFQ---EALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQ 380
Query: 220 -------CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
C GF S V +D Y KC + A D+F K
Sbjct: 381 YAGENWTCSINRGFTSAV------VDMYAKCGSIDIALDVFRK 417
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 36/223 (16%)
Query: 75 DYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
D H R +F +IS P++ T N+++ GY + H + + M Q + PDR +
Sbjct: 366 DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 425
Query: 134 SCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD--- 177
SC+ + + +Q+HS +++F L +D F+ + L++MYS C + + D
Sbjct: 426 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVC 485
Query: 178 ---------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EA F +M + P + +++ + +R + +++H V
Sbjct: 486 WNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVM 545
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
+ G+ +V + + L+D Y KC + A F M+ WN
Sbjct: 546 KDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWN 588
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 47/207 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
V L CS + L +Q+H+ +R L + C + R +F++++
Sbjct: 422 VILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER 481
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLH 145
+ NSI+ G T +L+ EAF F+ +M G++P + S+ SC+ + +Q+H
Sbjct: 482 DVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIH 541
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+Q +K G + ++ + LI+MY+ C +D D
Sbjct: 542 AQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGD 601
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++F M KP+AVT + VLT
Sbjct: 602 KAVELFEYMLTTEQKPDAVTFIAVLTG 628
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 47/205 (22%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164
EA Y M +GL+P F S+ +C + ++ H A+K GL ++ F+ N L+
Sbjct: 124 EAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALL 183
Query: 165 NMYSSC----------WCLDQP------------------DEAIKIFYRMEIENVKPNAV 196
MY+ C + + +P D+A+++F RM V + V
Sbjct: 184 GMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPV 243
Query: 197 TLVNVLTARAR--------ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++ +VL A A+ AR R + +H V GF S + +L+D Y KC +
Sbjct: 244 SVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDE 303
Query: 249 AWDLFVKM----LFPWN----NYGQ 265
A +F + + WN +GQ
Sbjct: 304 AVKVFESLPSVTIVSWNILITGFGQ 328
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L +QIHAQ+L+ +F+ C + +++FS++
Sbjct: 41 LQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVR 100
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+++ +I+ L A + + EM+ G+ PD F+ P++ K+C + + +H
Sbjct: 101 NVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVH 160
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD-------------------- 177
K GL F+ ++L +MY C LD PD
Sbjct: 161 GYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNE 220
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++ M E ++P VT+ L+A A + K+ H +G L T+++
Sbjct: 221 EAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSIL 280
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ YCK + A +F M+ WN
Sbjct: 281 NFYCKVGLIEYAEMIFDGMIEKDVVTWN 308
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF I + N+++ GY ++ EA EM +G+ P R + + A+
Sbjct: 192 RKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANM 251
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
I KQ H+ AI GL D+ L +++N Y ++ +
Sbjct: 252 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLI 311
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EAI + M EN+K + VTL +++A ++L+ K + G
Sbjct: 312 SGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLE 371
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S + L +T +D Y KC + A +F K L WN
Sbjct: 372 SDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWN 409
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
CL + + E KQ HA + L D + ++F +
Sbjct: 244 CLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKD 303
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHS 146
+ T N ++ GY + L EA M + L D +L S ++ + K++
Sbjct: 304 VVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 363
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------E 178
I+ GL SD L +T ++MY+ C + Q D E
Sbjct: 364 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 423
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E+V PN +T ++ + R + K + + SG + ++ TT+M+
Sbjct: 424 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMN 483
Query: 239 A 239
Sbjct: 484 G 484
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLF 132
+ + VF + N+++ Y + L EA ++EM ++ + P+ + SL
Sbjct: 392 NAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLL 451
Query: 133 KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192
++ + K++ Q G+ + T++N C +EAI +M+ ++
Sbjct: 452 RN-GQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGC---SEEAILFLRKMQESRLR 507
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWD 251
PNA T+ L+A A L + +H + + +S ++T+L+D Y KC +++A
Sbjct: 508 PNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAER 567
Query: 252 LF 253
+F
Sbjct: 568 VF 569
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ F QI +P + + N+I+ N +++ EA F+ +MI GL+PD F +L +C
Sbjct: 337 AKRAFYQIESPDLVSWNAIIAALANSDVN-EAIYFFCQMIHMGLMPDDITFLNLLCACGS 395
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ Q+HS IK GL + + N+L+ MY+ C L
Sbjct: 396 PMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNA 455
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
QP EA ++F M KP+ +T+ +L A L +VH +SG
Sbjct: 456 ILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSG 515
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
V + L+D Y KC + A +F
Sbjct: 516 LVVDVSVSNRLIDMYAKCGLLKHARYVF 543
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC 135
H VF+ IS + + S++ G+T EA + +M QG+ P+ F+F S+F +C
Sbjct: 234 HASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSAC 293
Query: 136 ADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYS----------SCWCLDQPD----- 177
+ +Q+ KFGL + F +L +MY+ + + ++ PD
Sbjct: 294 RSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWN 353
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EAI F +M + P+ +T +N+L A L ++H + + G
Sbjct: 354 AIIAALANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMG 413
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
+ +L+ Y KC + A+++F + L WN
Sbjct: 414 LDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWN 454
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 45/198 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHVRL-VFSQIS-NPTIYTCNSIV 97
T+ + QIH+ +++ L + C++ H VF IS N + + N+I+
Sbjct: 398 TLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAIL 457
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLA 154
+ EAF + M+ PD ++ +CA++ V Q+H ++K GL
Sbjct: 458 SACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLV 517
Query: 155 SDSFLHNTLINMYSSCWCL----------DQPD------------------EAIKIFYRM 186
D + N LI+MY+ C L PD EA+ +F M
Sbjct: 518 VDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMM 577
Query: 187 EIENVKPNAVTLVNVLTA 204
V+PN VT + VL+A
Sbjct: 578 RNLGVQPNEVTYLGVLSA 595
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 100/264 (37%), Gaps = 52/264 (19%)
Query: 50 CSTMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTC 93
C+ +R LK +IH +L+++ D H+ R F + ++ +
Sbjct: 90 CTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSW 149
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIK 150
++ GY+ ++A + Y +M+ G PD+ F S+ K+C DI + QLH IK
Sbjct: 150 TIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIK 209
Query: 151 FGLASDSFLHNTLINMYSS--------------------CWC--------LDQPDEAIKI 182
G N LI+MY+ W L EA+ +
Sbjct: 210 SGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYL 269
Query: 183 FYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M + V +PN +V +A +++ + G +V +L D Y
Sbjct: 270 FRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYA 329
Query: 242 KCKFVSRAWDLFVKM----LFPWN 261
K F+ A F ++ L WN
Sbjct: 330 KFGFLPSAKRAFYQIESPDLVSWN 353
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H R VF NP I + +S++ GY L EA + M G+ P+ + + +C+
Sbjct: 538 HARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACS 597
Query: 137 DI-YVEKQLH---SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
I VE+ H + I+ G+ + ++++ + CL + + IK
Sbjct: 598 HIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIK 646
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 51 STMRELKQIHAQMLRTSLFFDP--------------C-ADYHVRLVFSQISNPTIYTCNS 95
+++ + +Q HA +L+T LF D C AD LV + P +++ ++
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD--ATLVLDLVPEPNVFSFST 84
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFG 152
++ ++ + H A + +M+ +GL+PD + PS K+CA + K Q+H A G
Sbjct: 85 LIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSG 144
Query: 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
SDSF+ ++L++MY C +Q +A ++F RM +P+ V+ ++ A AR +
Sbjct: 145 FDSDSFVQSSLVHMYIKC---NQIRDAHRVFDRM----FEPDVVSWSALVAAYARQGCVD 197
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
KR+ + +SG ++ ++ + S A +F+ M
Sbjct: 198 EAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 49 KCSTMRELKQIHAQM----------LRTSLFFDPCADYHVRLVFSQISN----PTIYTCN 94
KC+ +R+ ++ +M L + C D RL FS++ + P + + N
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRL-FSEMGDSGVQPNLISWN 219
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKF 151
++ G+ + L+ EA L + +M ++G PD S+ + D+ + +H IK
Sbjct: 220 GMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQ 279
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME 187
GL SD + + LI+MY C C E ++F +M+
Sbjct: 280 GLVSDKCVSSALIDMYGKCSC---TSEMSQVFDQMD 312
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 49 KCSTMRELKQIHAQMLR------TSLFFDPCADYHVR---LVFSQISNP----TIYTCNS 95
KCS E+ Q+ QM + F + V +F Q+ + + + S
Sbjct: 297 KCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTS 356
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
++ + EA + EM + G+ P+ P L +C +I K H +++ G
Sbjct: 357 MIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416
Query: 153 LASDSFLHNTLINMYSSCW-------CLD---------------------QPDEAIKIFY 184
+++D ++ + LI+MY+ C C D + EA++IF
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476
Query: 185 RMEIENVKPNAVTLVNVLTA 204
M+ KP+ ++ VL+A
Sbjct: 477 LMQRSGQKPDIISFTCVLSA 496
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 127 MFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-------LD---QP 176
+F L + A + +Q H+ +K GL +D+ L L++ Y++ C LD +P
Sbjct: 18 IFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEP 77
Query: 177 D------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
+ A+ F +M + P+ L + + A A L+ ++VH
Sbjct: 78 NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVH 137
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
SGF S ++++L+ Y KC + A +F +M P + W A+ A QG
Sbjct: 138 GIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP--DVVSWSALVAAYARQGC 195
Query: 278 V 278
V
Sbjct: 196 V 196
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 116/278 (41%), Gaps = 66/278 (23%)
Query: 47 LEKCSTMRELKQIHAQMLR-------TSLF-------FDPCAD--YHVRLVFSQISNPTI 90
L +C M +LKQIHA LR T+LF F D Y R VF Q+ NP
Sbjct: 29 LNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHFSSLHDLNYAYR-VFDQVDNPNS 87
Query: 91 YTCNSIVRGYTNKN---LHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYV---EKQ 143
+ N ++R L EA L Y+ M+ + PD FP + K+CA ++ KQ
Sbjct: 88 FMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQ 147
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVL 202
H+ +K G SD +++N+LI+ Y+SC L+ A +F +M + V NA+ VL
Sbjct: 148 AHAHLLKLGFQSDVYINNSLIHFYASCGSLES---AKNVFDKMPQRSLVSWNAMIDAFVL 204
Query: 203 TARARAR--------------DLRTVKRVHK-----CVDESGFWS--------------- 228
D T++ V C G W+
Sbjct: 205 FGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARD 264
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
HV + +L+D YCKC + A +F M + WN+
Sbjct: 265 HVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNS 302
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 32/205 (15%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
I + N+I+ GY + +A F++ M+ G+ PD+F + ++ +CA+ I + KQ+H+
Sbjct: 576 IVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHA 635
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
IK L D ++ +TL++MYS C L +E
Sbjct: 636 HVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEE 695
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLM 237
AIK+F M + N+ PN T V++L A A + R + H E G +E + ++
Sbjct: 696 AIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMV 755
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNN 262
D K V +A +L +M F ++
Sbjct: 756 DILGKSGEVEKALELIQEMPFEADD 780
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + N+I+ + + M+ G+ PD + F S+ K+CA +
Sbjct: 440 VFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSL 499
Query: 141 E--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE 178
++H+ +K G+AS+ ++ ++L++MYS C +D+ ++
Sbjct: 500 NHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEK 539
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 31/205 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
L F + + + NS++ G+ + E+ + EM G+ D F + K C+
Sbjct: 136 LCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILE 195
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
+ + Q+H A++ G +D + L++MY+ C LD+
Sbjct: 196 NYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIA 255
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
D +K+F M+ V + +VL + A DLR ++H +S F
Sbjct: 256 GCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVK 315
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
++T +D Y KC + A LF
Sbjct: 316 DGIVRTATLDMYAKCNNMQDAQRLF 340
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 47/259 (18%)
Query: 45 VSLEKCSTMRELK---QIHAQMLRTSLFFDPCA-----DYHVR--------LVFSQISNP 88
V L+ CS + K QIH LR D + D + + VF +
Sbjct: 186 VILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQK 245
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+ ++I+ G N + EM G+ + ++ S+ KSCA D+ + QLH
Sbjct: 246 NWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLH 305
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPD 177
+ A+K D + ++MY+ C + D
Sbjct: 306 AHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGF 365
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+ +F ++ ++ + ++L L A A + L ++H +S F ++ + +
Sbjct: 366 RALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFI 425
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC+ + A +F +M
Sbjct: 426 DMYGKCEALDEACRVFDEM 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L+ C+ + + KQIHA +++ L +D C + H RL+F +
Sbjct: 618 LDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDF 677
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQL---HS 146
T N+++ GY + + EA + M++ ++P+ F SL ++CA + VE+ L H
Sbjct: 678 VTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHM 737
Query: 147 QAIKFGL 153
++GL
Sbjct: 738 MKKEYGL 744
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
+F + + N ++RG+ + L +A FYH M G+ D F +P + K+C +Y
Sbjct: 82 LFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYD 141
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+++H + IK GL D ++ N+LI MY+ C++ +
Sbjct: 142 LAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISG 201
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++ F M+ +K + +++ +L A + LR K +H + S
Sbjct: 202 YVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELD 261
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNY-GQWAMSA 270
V ++T+L+D Y KC + A LF K + WN G ++++A
Sbjct: 262 VMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNA 307
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 112/259 (43%), Gaps = 51/259 (19%)
Query: 53 MRELKQIHAQMLRTSLFFD------------PCA--DYHVRLVFSQISNPTIYTCNSIVR 98
+R K+IH QM+R+ L D C DY RL F QI++ +I N+++
Sbjct: 243 LRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERL-FDQITDKSIVAWNAMIG 301
Query: 99 GYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
GY+ E+F + +M G L PD +L CA I + K +H AI+ G
Sbjct: 302 GYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFL 361
Query: 155 SDSFLHNTLINMYSSCW------CL----------------------DQPDEAIKIFYRM 186
L L++MY C CL + +A+ +F +
Sbjct: 362 PHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDL 421
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
+ +KP+A T+ ++L A A LR +++H V + S+ + +++ Y KC +
Sbjct: 422 CNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNL 481
Query: 247 SRAWDLFVKMLF----PWN 261
RA ++F +M F WN
Sbjct: 482 LRAREIFDRMTFKDVISWN 500
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 110/259 (42%), Gaps = 51/259 (19%)
Query: 53 MRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSIVR 98
+ E +++H +++++ L D C + +VF ++ + + NS++
Sbjct: 142 LAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIE-SAEMVFREMPVRDLVSWNSMIS 200
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYVE--KQLHSQAIKFGLAS 155
GY + + + EM G+ DRF + +C+ + ++ K++H Q ++ L
Sbjct: 201 GYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLEL 260
Query: 156 DSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRM- 186
D + +L++MY+ C +D Q E+ +M
Sbjct: 261 DVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQ 320
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E + P+ +T++N+L A+ + K VH +GF H+ L+T L+D Y +C +
Sbjct: 321 EGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKL 380
Query: 247 SRAWDLFVKM----LFPWN 261
A LF +M L WN
Sbjct: 381 KPAECLFGQMNERNLISWN 399
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCAD 137
+F Q++ + + N+++ YT + +A + ++ + L PD S+ + A
Sbjct: 386 LFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELAS 445
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ +Q+H K L S++F+ N+++ MY C L + E IF RM ++V ++
Sbjct: 446 LREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRARE---IFDRMTFKDV----IS 498
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
V+ A A R + + E GF + +L+ + V+ W+ F M
Sbjct: 499 WNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMK 558
Query: 258 FPWN 261
+N
Sbjct: 559 RDYN 562
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L KQIHA++L+ +F+ C + ++FS++
Sbjct: 77 LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVR 136
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLH 145
+++ +I+ L A + + EM+ + PD F+ P++ K+C + + +H
Sbjct: 137 NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVH 196
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD-------------------- 177
+K GL F+ ++L +MY C LD PD
Sbjct: 197 GYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNE 256
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++F M + V+P VT+ L+A A + K+ H +G L T+L+
Sbjct: 257 EAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLL 316
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWN 261
+ YCK + A +F +M + WN
Sbjct: 317 NFYCKVGLIEYAEMVFDRMFEKDVVTWN 344
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 110/266 (41%), Gaps = 40/266 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VF +I + N+++ GY + EA + +M QG+ P R + + A++
Sbjct: 230 VFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGG 289
Query: 140 VE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
VE KQ H+ AI G+ D+ L +L+N Y ++ +
Sbjct: 290 VEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISG 349
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-KCVDESGFWS 228
+AI + M +E +K + VTL +++A AR +L+ K V C+ S F S
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHS-FES 408
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ L +T+MD Y KC + A +F K L WN A A G G R
Sbjct: 409 DIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTL--LAAYAESGLSGEALRLFYG 466
Query: 285 HQISGPCPKKAH-KLFFFSMLKKVHV 309
Q+ G P L S+L+ V
Sbjct: 467 MQLEGVPPNVITWNLIILSLLRNGQV 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHA----------QMLRTSLFFDPCA---DYHVRLVFSQISNPT 89
CL + + E KQ HA +L TSL C + +VF ++
Sbjct: 280 CLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKD 339
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ T N I+ GY + L +A M ++ L D +L + A ++ + K++
Sbjct: 340 VVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 399
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
I+ SD L +T+++MY+ C + E
Sbjct: 400 YCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGE 459
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E V PN +T ++ + R + K + + SG ++ TT+M+
Sbjct: 460 ALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMN 519
Query: 239 A 239
Sbjct: 520 G 520
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 9/183 (4%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLFKSCA 136
VF + N+++ Y L EA ++ M ++G+ P+ + SL ++
Sbjct: 432 VFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRN-G 490
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ K + Q G+ + T++N C +EAI +M+ ++PNA
Sbjct: 491 QVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGC---SEEAILFLRKMQESGLRPNAF 547
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
++ L+A A L + +H + + S V ++T+L+D Y KC +++A +F
Sbjct: 548 SITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGS 607
Query: 256 MLF 258
L+
Sbjct: 608 KLY 610
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L +QIHAQ+L+ +F+ C + +++FS++
Sbjct: 53 LQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVR 112
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+++ +I+ L A + + EM+ G+ PD F+ P++ K+C + + +H
Sbjct: 113 NVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVH 172
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD-------------------- 177
K GL F+ ++L +MY C LD PD
Sbjct: 173 GYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYE 232
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++ M E ++P VT+ L+A A + K+ H +G L T+++
Sbjct: 233 EAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSIL 292
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ YCK + A +F M+ WN
Sbjct: 293 NFYCKVGLIEYAEMIFDGMIEKDVVTWN 320
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF I + N+++ GY ++ EA EM +G+ P R + + A+
Sbjct: 204 RKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANM 263
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
I KQ H+ AI GL D+ L +++N Y ++ +
Sbjct: 264 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLI 323
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EAI + M EN+K + VTL +++A ++L+ K + G
Sbjct: 324 SGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLE 383
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S + L +T +D Y KC + A +F K L WN
Sbjct: 384 SDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWN 421
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
CL + + E KQ HA + L D + ++F +
Sbjct: 256 CLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKD 315
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHS 146
+ T N ++ GY + L EA M + L D +L S ++ + K++
Sbjct: 316 VVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 375
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------E 178
I+ GL SD L +T ++MY+ C + Q D E
Sbjct: 376 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 435
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E+V PN +T ++ + R + K + + SG + ++ TT+M+
Sbjct: 436 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMN 495
Query: 239 A 239
Sbjct: 496 G 496
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLF 132
+ + VF + N+++ Y + L EA ++EM ++ + P+ + SL
Sbjct: 404 NAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLL 463
Query: 133 KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192
++ + K++ Q G+ + T++N C +EAI +M+ ++
Sbjct: 464 RN-GQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGC---SEEAILFLRKMQESGLR 519
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWD 251
PNA T+ L+A L + +H + + +S ++T+L+D Y KC +++A
Sbjct: 520 PNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAER 579
Query: 252 LF 253
+F
Sbjct: 580 VF 581
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 115/289 (39%), Gaps = 84/289 (29%)
Query: 56 LKQIHAQMLRTSL--------------FFDPCAD---YHVRLVFSQISNPTIYTCNSIVR 98
L+ IHAQM++T L P D Y + VF I P + N++ R
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAIS-VFETIQEPNLLIWNTMFR 61
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS 155
G+ + A Y MI GL+P+ + FP L KSCA +Q+H +K G
Sbjct: 62 GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 156 DSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRME 187
D ++H +LI+MY L+ + A K+F +
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIP 181
Query: 188 IENV-------------------------------KPNAVTLVNVLTARARARDLRTVKR 216
+++V +P+ T+V V++A A++ + ++
Sbjct: 182 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 241
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
VH +D+ GF S++++ L+D Y KC V A LF K + WN
Sbjct: 242 VHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWN 290
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 33/210 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + +M+ + PD ++ +CA
Sbjct: 176 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 235
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+H G S+ + N LI++YS C ++
Sbjct: 236 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGG 295
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +++ G
Sbjct: 296 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVT 355
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ L T+L+D Y KC + A +F ML
Sbjct: 356 NASSLLTSLIDMYAKCGDIEAAKQVFDSML 385
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 45/163 (27%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F +S + + N+++ GYT+ NL+ EA L + EM+ G P+ S+ +CA
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y+ K+L G+ + S L +LI+MY+ C ++
Sbjct: 337 IDIGRWIHVYINKRLK------GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLS 390
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ + A +F +M + P+ +T V +L+A
Sbjct: 391 SWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSA 433
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW- 171
M+ +G+ PD + F SL K+CA +Q H A+K G A ++ TLINMY+ C
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD 188
Query: 172 --------------CL-------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
C+ P EA+ +F M+ + +KP +VTL++VL+A
Sbjct: 189 VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSA 248
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A L + +H + + S V++ T L+D Y KC + A +F M
Sbjct: 249 CALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 47/251 (18%)
Query: 47 LEKCSTMR---ELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L+ C++ R E +Q H ++ + C D R++F ++ +
Sbjct: 145 LKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECV 204
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+++ +L EA + + EM +GL P S+ +CA + + + +H
Sbjct: 205 VSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDY 264
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
K L S ++ LI+MY+ C L+ EA
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREA 324
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I +F M+ + +KP+ VT + VL A + + + + + E G S ++ + D
Sbjct: 325 ISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDL 384
Query: 240 YCKCKFVSRAW 250
+ + RA+
Sbjct: 385 LARSGQLERAY 395
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F RM E V P+ T V++L A A AR ++ H ++G H + TL++ Y
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA 184
Query: 242 KCKFVSRAWDLFVKM 256
+C V A +F +M
Sbjct: 185 ECGDVRAARVMFDRM 199
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 27/227 (11%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQISNPTIYT 92
++ C T +++ QI AQ++ ++ CA + R +F QI +P I
Sbjct: 107 NMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIAL 166
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAI 149
NS+ RGY + E + +M + P+ F FP + KSC I +Q+H I
Sbjct: 167 WNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI 226
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
K G + F+ TLI+MYS+ + +A KIF M + N V +++ +
Sbjct: 227 KCGFRGNPFVGTTLIDMYSAGGTV---GDAYKIFCEM----FERNVVAWTSMINGYILSA 279
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
DL + +R+ E V L ++ Y + + A LF +M
Sbjct: 280 DLVSARRLFDLAPE----RDVVLWNIMVSGYIEGGDMVEARKLFXEM 322
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 75/191 (39%), Gaps = 46/191 (24%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGY-TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
R +F ++ N + N++++GY TN N+ LF EM P+R +F
Sbjct: 314 EARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLF-EEM------PERNIF------- 359
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPN 194
+ + HN L E + F RM E +V PN
Sbjct: 360 --------------SWNALIGGYAHNGLFF------------EVLGSFKRMLSESDVPPN 393
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
TLV VL+A AR L K VH + SG +V + LMD Y KC + A +F
Sbjct: 394 DATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 453
Query: 255 KM----LFPWN 261
M L WN
Sbjct: 454 GMDTKDLISWN 464
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 51/267 (19%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTI 90
L CS + LK QIHA +LR+ F+ C + +F ++ I
Sbjct: 250 LNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNI 309
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GY + EA EM G PD + S+ SC + +Q+HS
Sbjct: 310 ISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSY 369
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------------A 179
IK L D+F+ N LI+MYS C LD A
Sbjct: 370 VIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGA 429
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F M +++V P+ +T V++L A L+ K++H + + GF + L+D
Sbjct: 430 LEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDV 489
Query: 240 YCKCKFVSRAWDLFV----KMLFPWNN 262
Y KC + A +F K + WN+
Sbjct: 490 YSKCSCIRDARYVFEGTTNKDIVVWNS 516
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 33/158 (20%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF +N I NS+ GY + EAF Y ++ + P+ F F +L + A I
Sbjct: 500 RYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAAL-TTAASI 558
Query: 139 YVE----KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------- 177
+Q H+Q +K GL SD F+ N L++MY+ C +++ +
Sbjct: 559 LASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSM 618
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F M N+ PN VT V+VL+A
Sbjct: 619 ISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSA 656
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 46/274 (16%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPC-ADYHVRLVFS 83
+Y L S ++ +QIH+ +++ L + C A + VF
Sbjct: 344 EYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFD 403
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---V 140
++ ++ N+++ GY+ + A + EM ++ + P F SL A + +
Sbjct: 404 VVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQL 463
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------- 174
KQ+H IK+G + D F + LI++YS C C+
Sbjct: 464 SKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNL 523
Query: 175 --QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ +EA K++ +++ +PN T + TA + L ++ H V + G S +
Sbjct: 524 QLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFI 583
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
L+D Y KC V A +F + W + W
Sbjct: 584 TNALVDMYAKCGSVEEAEKIFSSSV--WKDTACW 615
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 47/214 (21%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RLVF + T T +I+ GYT + ++ M+ +IPD+++ S+ +C+ +
Sbjct: 197 RLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVL 256
Query: 139 -YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---- 191
Y++ KQ+H+ ++ D +N LI+ Y+ C + +F R++++N+
Sbjct: 257 GYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKC---GRVKAGKALFDRLDVKNIISWT 313
Query: 192 ---------------------------KPNAVTLVNVLTARARARDLRTVKRVHK----- 219
KP+ +VLT+ L+ +++H
Sbjct: 314 TMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKV 373
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
C++ F + L+D Y KC + A +F
Sbjct: 374 CLEHDNF-----VTNALIDMYSKCNALDDAKRVF 402
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR--- 125
+F + + +F ++ N + + +S+V YT + +A L++ E Q D+
Sbjct: 85 YFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEF--QRTCVDKLNE 142
Query: 126 FMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------ 176
++ S+ ++C + Q+HS IK G D ++ +L+ +Y+ +D+
Sbjct: 143 YILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDG 202
Query: 177 ----------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
+ ++++F M NV P+ L ++L A + L+
Sbjct: 203 LVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGG 262
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
K++H V S V L+D Y KC V LF VK + W
Sbjct: 263 KQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTT 314
>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
Length = 903
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 39/239 (16%)
Query: 57 KQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
+++ +LR L + D V VFS++ + +I+ YT A +H M
Sbjct: 62 EELGNHLLRLYLKCESLGD--VEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRM 119
Query: 117 IVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
+G+ D F ++ K+CA D+ + +H+ ++ GL S L N L+++Y SC C+
Sbjct: 120 QQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCV 179
Query: 174 ------------------------DQPDE---AIKIFYRMEIENVKPNAVTLVNVLTARA 206
Q + A+++F RM++E V+P +TLV LT A
Sbjct: 180 ASAMLLFEKMERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA 239
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+R + +H V ESG + + T L AY + + +A ++F + + WN
Sbjct: 240 ---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWN 295
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 44 LVSLEKCSTMRELKQIH-----AQMLRTSLFFDPCADYHVRL--------VFSQISNPTI 90
+++L C+T+R+ + IH + + +T + A + RL VF + + +
Sbjct: 232 VIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDV 291
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
+ N+++ Y EA L + M+ +G+ P + + C+ + + +H A++
Sbjct: 292 VSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALE 351
Query: 151 FGLASDSFLHNTLINMYSSCWCLD---------------------------QPDEAIKIF 183
GL D L N L++MY+ C + Q A+++F
Sbjct: 352 KGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVSWNTMIAGSSQKGQMKRAVELF 411
Query: 184 YRMEIENVKPNAVTLVNVLTARA----RARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
RM++E + P T +N+L A A AR + +++H + G+ S + T ++
Sbjct: 412 QRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKM 471
Query: 240 YCKCKFVSRAWDLFVK 255
Y C + A F +
Sbjct: 472 YASCGAIDEAAASFQR 487
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP------------TIYTCNSIV 97
CS++R + IH L L D + ++++ +P + N+++
Sbjct: 336 CSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVSWNTMI 395
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-------IYVEKQLHSQAIK 150
G + K A + M ++G+ P R + +L ++ A + ++LHS+ +
Sbjct: 396 AGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP-------------------------------DEA 179
G AS+ + ++ MY+SC +D+ A
Sbjct: 456 CGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRA 515
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ F RM++ V PN +T V VL A A A L + VH + SG S++ + T L
Sbjct: 516 LGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASM 575
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
Y +C + A ++F K+ + AM A GL G
Sbjct: 576 YGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAG 615
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 35/184 (19%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------- 178
+++H++ + GL + L N L+ +Y C L +E
Sbjct: 49 RRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEH 106
Query: 179 -----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
AI +F+RM+ E V+ +AVT + VL A AR DL + +H + ESG L
Sbjct: 107 GQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLA 166
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM---LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGP 290
L+ Y C V+ A LF KM L WN A +A G G+ Q+ G
Sbjct: 167 NLLLHIYGSCGCVASAMLLFEKMERDLVSWN--AAIAANAQSGDLGIALELFQRMQLEGV 224
Query: 291 CPKK 294
P +
Sbjct: 225 RPAR 228
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 49/265 (18%)
Query: 44 LVSLEKCSTMRELKQ---IHAQMLRTSL------------FFDPCADYHVRLVFSQISNP 88
L L+ C+ + +L Q IHA ++ + L + C ++ +
Sbjct: 132 LAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMER 191
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
+ + N+ + A + M ++G+ P R CA I + +H
Sbjct: 192 DLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIV 251
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+ GL + L + Y+ L Q EA
Sbjct: 252 RESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAA 311
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F RM E + P+ VTLVN T LR + +H C E G + L L+D Y
Sbjct: 312 LLFARMLHEGISPSKVTLVNASTG---CSSLRFGRMIHGCALEKGLDRDIVLGNALLDMY 368
Query: 241 CKCKFVSRAWDLFVKM---LFPWNN 262
+C A LF ++ WN
Sbjct: 369 TRCGSPEEARHLFKRIPCNAVSWNT 393
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 50/258 (19%)
Query: 69 FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI---------- 117
F C + + RL+F +I + +CN+++ G+T ++ + E++
Sbjct: 75 LFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSST 134
Query: 118 VQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMY---------- 167
+ GLIP ++ Y+ +H +K G+ S S + L +Y
Sbjct: 135 IVGLIP-------VYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFAR 187
Query: 168 ------------------SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
S C D AI +F M+ NV PN VT+ ++L+A A+
Sbjct: 188 QLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIG 247
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMS 269
L + VH + + F S+V + T L+D Y KC ++ A +LF L P N W +
Sbjct: 248 ALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELF--DLMPEKNEVTW--N 303
Query: 270 ATVGPQGLVGRHSTAHQI 287
A + GL G A ++
Sbjct: 304 AMISGYGLHGHGQEALKL 321
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 32/225 (14%)
Query: 3 APLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHF---CLVS--------LEKCS 51
A L L +Q+ P+ +S ++P + + + I S H CL L+ C
Sbjct: 28 ASLSLQYQSPNPSFTS-SAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCI 86
Query: 52 TMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNS 95
+ +K Q+HAQ+ FD + RL+F +I I+ N
Sbjct: 87 ARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNV 146
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
++RGY + A Y++M GL+PD F FP + K+CA + +++H ++ G
Sbjct: 147 LIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTG 206
Query: 153 LASDSFLHNTLINMYSSCWCLDQPDEAI-KIFYRMEIENVKPNAV 196
D F+ LI+MY+ C C+ E KI R + V NA+
Sbjct: 207 WEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAM 251
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 121 LIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP- 176
L P + SL +SC I KQLH+Q G D+ + L+N+Y C L
Sbjct: 71 LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130
Query: 177 ---------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
+ A++++Y+M + P+ T VL A A
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ + +H+ V ++G+ V + L+D Y KC V A ++F K+L
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKIL 238
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 116/258 (44%), Gaps = 51/258 (19%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPC-------------ADYHV---RLVFSQISNPTI 90
C+ M L +Q H ++++ L D C AD V R VF ++ +
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214
Query: 91 YTCNSIVRGYT-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ +I+ GY + EA + EM+ + P+ F F S+ K+CA DI++ +Q+++
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
+K LAS + + N+LI+MYS C ++ +E
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A ++F +E NA T ++L+ + + +++H + +SGF S++ + L+
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALIS 394
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y +C + A+ +F +M
Sbjct: 395 MYSRCGNIEAAFQVFNEM 412
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF ++ + + T ++ + +A + +M++ G +PDRF + +CA+
Sbjct: 101 VFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGL 160
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN------- 190
+ + +Q H +K GL D + +L++MY+ C D+A K+F RM + N
Sbjct: 161 LSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAI 220
Query: 191 -------------------------VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
VKPN T +VL A A D+ ++V+ V +
Sbjct: 221 ITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMR 280
Query: 226 FWSHVELKTTLMDAYCKC---KFVSRAWD-LFVKMLFPWN 261
S + +L+ Y +C + +A+D LF K L +N
Sbjct: 281 LASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYN 320
>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 989
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R++F + + NS++ Y E+F + +M GL P+ S+ +C+D
Sbjct: 296 RVLFDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDF 355
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ + +H IKFGLA + + L++MYS LD
Sbjct: 356 FGVNLGDSVHGMVIKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSII 415
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ A+ F +M+IENV P+A T++ V+ +DLR K +H + F
Sbjct: 416 SGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFE 475
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + L+ Y C +S ++ LF V+ML WN
Sbjct: 476 LNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISWN 513
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 44/230 (19%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQL 144
PT+Y+ N VR +++ H E Y + G D F FP + K+CA + + +++
Sbjct: 105 PTVYSLNLAVRCFSDHGFHRELLDLYRTLCTFG--SDNFTFPPVIKACAAVSCLPLGREM 162
Query: 145 HSQAIKFGLASDSFLHNTLINMYS-SCWC---------LDQPD----------------- 177
H + ++ G + + L++MY+ + W + Q D
Sbjct: 163 HCRVLRTGHEGNVGVQTALLDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSLNGSL 222
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA++ M+ + ++ NA TLV + A A D +H + G L L
Sbjct: 223 REAVEATQEMQQDGMRANASTLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDESLAPAL 282
Query: 237 MDAYCKCKFVSRAWDLF----VKMLFPWNN-------YGQWAMSATVGPQ 275
+ Y +S + LF VK L +N+ +G+W S V Q
Sbjct: 283 ISLYAALDDLSSSRVLFDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQ 332
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 31/191 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIK 150
NSI+ GY N + A + +M ++ + PD + C D+ + K +H+ A++
Sbjct: 412 NSIISGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVR 471
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
+ + N L+ MY C L + ++K+
Sbjct: 472 NRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISWNTIISGYAEIRDLEASVKL 531
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F++M E ++ + VTL+ ++++ + A D + +H +SG + L TL+ Y
Sbjct: 532 FFQMRQEGLQFDVVTLIGLISSISVAEDTTVGESLHSLAVKSGCNMDISLTNTLITMYSN 591
Query: 243 CKFVSRAWDLF 253
C V LF
Sbjct: 592 CGSVEACQRLF 602
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 48/271 (17%)
Query: 35 NSQYQAHFCLVSL-EKCSTMRELKQIHAQMLR------TSLFFDPC--------ADYHVR 79
N Q H +++L C ++ K +H +R TS F DY +
Sbjct: 639 NEQEPNHITVLNLLPVCQNHQQGKSVHCYAIRNFSTLETSFFTSAICMYSRFNNVDYSCK 698
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
L F+ + I N+I+ L AF F+ +M + PD SL +CA +
Sbjct: 699 L-FNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHFLNMKPDEVTMMSLVSACAQLG 757
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------ 178
+ + + + ++ G + N LI+M+S C L E
Sbjct: 758 NSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDSVTWSAMIN 817
Query: 179 ----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGFW 227
A+ IF M VKP+ +T V +L+A + + + + + K + + G
Sbjct: 818 SYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACSHSGFVEQARALFKSLQIDHGIT 877
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+E ++D + + A+D+ M F
Sbjct: 878 PRMEHYACMVDLLGRSGHLDEAYDVVRSMSF 908
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 52/256 (20%)
Query: 58 QIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
Q+HA +LR++ + C D +R +F ++ + N I+ Y
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLD-DMRRLFDEMPERDNVSYNVIIAAYAWN 315
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFP-----SLFKSCADIYVEKQLHSQAIKFGLASDSF 158
+ EM Q L DR + P S+ S D+++ KQ+H+Q + GLAS+
Sbjct: 316 QCAATVLRLFREM--QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDL 373
Query: 159 LHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIEN 190
L N LI+MYS C LD Q +EA+++F M
Sbjct: 374 LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG 433
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
++P+ T +++ A + + +++H + SG+ S V + L+D Y KC + A
Sbjct: 434 LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEAL 493
Query: 251 DLFVKMLFPWNNYGQW 266
F +M P N W
Sbjct: 494 RTFDEM--PERNSISW 507
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHAQ++ L + C + FS S + + +++ GY
Sbjct: 357 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 416
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKFGLASDSFLH 160
H EA + +M GL PDR F S+ K S A I + +QLHS I+ G S F
Sbjct: 417 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 476
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAV 196
+ L++MY+ C CL DEA++ F M E ++ NAV
Sbjct: 477 SVLVDMYAKCGCL---DEALRTFDEMPERNSISWNAV 510
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 39/243 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++ + T N+++ G + + LH +A + M G+ F F S+ A
Sbjct: 189 ARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAG 248
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PDE-------- 178
+ + Q+H+ ++ + F++N+L++ YS C CLD P+
Sbjct: 249 MAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVI 308
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+++F M+ + +L+ D+ K++H + G
Sbjct: 309 IAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGL 368
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLV--GRHSTA 284
S L L+D Y KC + A F N + A+S T G V G+H A
Sbjct: 369 ASEDLLGNALIDMYSKCGMLDAAKSNFS------NRSEKSAISWTALITGYVQNGQHEEA 422
Query: 285 HQI 287
Q+
Sbjct: 423 LQL 425
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
+ +A+ +F M E V P+ VT+ VL TV +H + G +HV +
Sbjct: 120 RTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGC-----TVPSLHPFAIKFGLDTHVFVCN 174
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
TL+DAYCK ++ A +F++M
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEM 196
>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 774
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +FS I P++ N+++ GY+N + EA + +M Q L PD+ + SCA +
Sbjct: 370 RRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARL 429
Query: 139 -YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD------- 177
++E KQ+H I+ ++ +S + + LI +YS C C+++ D
Sbjct: 430 RFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSM 489
Query: 178 -----------EAIKIFYRMEIENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+ +F RM V PN + VL++ +R L ++ H V +SG
Sbjct: 490 ISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSG 549
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ S ++T L D YCKC + A F +L
Sbjct: 550 YVSDSFVETALTDMYCKCGEIDSARQFFDAVL 581
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 49/234 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + + + N+++ K +A + Y M+ G +P RF S+ +C+ D
Sbjct: 94 VFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLD 153
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD--------- 177
+ H A+K GL + F+ N L++MY+ C L QP+
Sbjct: 154 GVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 213
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV---------KRVHK 219
EA+++F M + V+ ++V L N+L+ A ++ K++H
Sbjct: 214 GLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHC 273
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
GF + L +L++ Y K K ++ A +F +M + WN +GQ
Sbjct: 274 LALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQ 327
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
V L C+ +R L KQIH ++RT + + C + +F N
Sbjct: 421 VILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINE 480
Query: 89 TIYTC-NSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
C NS++ G+ + L +A + + M L P+ F ++ SC+ + +Q
Sbjct: 481 LDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQ 540
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
H +K G SDSF+ L +MY C +D +
Sbjct: 541 FHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGR 600
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
DEA+ ++ +M KP+ +T V+VLTA
Sbjct: 601 GDEAVGLYRKMISSGEKPDGITFVSVLTA 629
>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
Length = 740
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +FS I P++ N+++ GY+N + EA + +M Q L PD+ + SCA +
Sbjct: 336 RRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARL 395
Query: 139 -YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD------- 177
++E KQ+H I+ ++ +S + + LI +YS C C+++ D
Sbjct: 396 RFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSM 455
Query: 178 -----------EAIKIFYRMEIENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+ +F RM V PN + VL++ +R L ++ H V +SG
Sbjct: 456 ISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSG 515
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ S ++T L D YCKC + A F +L
Sbjct: 516 YVSDSFVETALTDMYCKCGEIDSARQFFDAVL 547
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 49/234 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + + + N+++ K +A + Y M+ G +P RF S+ +C+ D
Sbjct: 60 VFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLD 119
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD--------- 177
+ H A+K GL + F+ N L++MY+ C L QP+
Sbjct: 120 GVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 179
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV---------KRVHK 219
EA+++F M + V+ ++V L N+L+ A ++ K++H
Sbjct: 180 GLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHC 239
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
GF + L +L++ Y K K ++ A +F +M + WN +GQ
Sbjct: 240 LALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQ 293
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
V L C+ +R L KQIH ++RT + + C + +F N
Sbjct: 387 VILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINE 446
Query: 89 TIYTC-NSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
C NS++ G+ + L +A + + M L P+ F ++ SC+ + +Q
Sbjct: 447 LDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQ 506
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
H +K G SDSF+ L +MY C +D +
Sbjct: 507 FHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGR 566
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
DEA+ ++ +M KP+ +T V+VLTA
Sbjct: 567 GDEAVGLYRKMISSGEKPDGITFVSVLTA 595
>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 726
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 52/264 (19%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHVRL---------------VFSQISNPTIYTCN 94
C +R LKQIHA +L ++ F + + +L VFS + P + N
Sbjct: 38 CKDLRTLKQIHASLLVSTGFNESISFPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWN 97
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEKQLHSQAIK 150
I+R + + L EA L Y +M G+ D F FP++ ++ +D+ + K +H A+K
Sbjct: 98 LIMRTHLDFGLVTEALLLYKKMRESGVKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMK 157
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----DE------------------------AIKI 182
G D + NT+I +Y+ C C+ DE A ++
Sbjct: 158 LGFGYDLYFCNTMIEVYARCGCVYYGRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFEL 217
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M +E ++PN+VTL+ +L + +++H + ++G + ++ +++ Y
Sbjct: 218 FNKMRLE-MEPNSVTLIVMLKGCYAYDNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYSI 276
Query: 243 CKFVSRAWDLFVKM----LFPWNN 262
LFV++ + WN
Sbjct: 277 TGSAKEVESLFVEIYRRDVISWNT 300
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM--FPSLFKS 134
V +F +I + + N+++ Y + E +++M + + + S+F
Sbjct: 282 EVESLFVEIYRRDVISWNTLIGFYALRGDAEEMVCGFNQMRGEVALSSETLTLVISVFAK 341
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W--- 171
++ ++LHS +IK GL D L +L++ Y+ C W
Sbjct: 342 IGNLVEGEKLHSFSIKVGLCDDVLL-ASLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLM 400
Query: 172 ---CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
C+ DEAI +F +M+ V+ A L +++ A + L+ K +H + + F
Sbjct: 401 MSGCIQNGYFDEAIHLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFF 460
Query: 227 W----SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ ++ L T++++ Y +C +S A + F +M+
Sbjct: 461 YILEGDNIHLGTSILNMYIRCGSISSAREYFNRMV 495
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 37 QYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV--------------- 78
Q QA ++ CS + L K+IH + R + + H+
Sbjct: 426 QLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDNIHLGTSILNMYIRCGSIS 485
Query: 79 --RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R F+++ T S++ GY + EA +++M+V+ ++P+R F SL +C+
Sbjct: 486 SAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPNRVTFLSLLSACS 545
Query: 137 DIYVEKQ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188
+ +Q S FG+ D + ++++ C + EA+ + RM +
Sbjct: 546 HSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRC---GKIKEALAMIIRMVV 598
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 34/165 (20%)
Query: 71 DPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
+PC + R +F +I++ + N ++R Y N L+ +A L + M QG PD + +P
Sbjct: 86 EPC---YTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPC 142
Query: 131 LFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------- 176
+ K+C +++V Q+H +K GL + ++ N L++MY C LD
Sbjct: 143 VLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRD 202
Query: 177 -----------------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
++A+K+ ME +KP+A T+ ++L A
Sbjct: 203 MVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPA 247
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 4/181 (2%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R V ++ + + NS+V GY ++A EM L PD SL + +
Sbjct: 192 RRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNT 251
Query: 139 YVEKQLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ L+ + + L S + N +I +Y + P+EA+ ++ +M++ V+P+AV+
Sbjct: 252 SCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNN---AMPNEAVDLYLQMQVHGVEPDAVS 308
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ +VL A +R+H+ V+ ++ L+ L+D Y KC + A +F +M+
Sbjct: 309 ISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMM 368
Query: 258 F 258
F
Sbjct: 369 F 369
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 31/211 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+V+ +F ++ ++ + N ++ Y N + +EA Y +M V G+ PD S+ +C
Sbjct: 258 YVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACG 317
Query: 137 DI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------- 173
D+ + +++H + L + L N LI+MY+ C CL
Sbjct: 318 DLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTS 377
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
Q +A+ +F +M P+ + V+VL A + A + + + E G
Sbjct: 378 MISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYG 437
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E ++D + + A+ L +M
Sbjct: 438 ITPGIEHYNCMVDLLGRAGKIDEAYHLTRQM 468
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 49/284 (17%)
Query: 29 INNNNINSQYQAHFC--LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+N N+ Y+ C L+S + ++R+ Q+HA +L+ L P +++ ++S+
Sbjct: 16 LNQNSFEQNYR-QICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQ 74
Query: 87 NP-------------TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
P + T +S++ + A F+ M+ G+ PD ++PS K
Sbjct: 75 LPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATK 134
Query: 134 SCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------------------- 170
+C + V K +H A+K G D F+ ++L++MY+ C
Sbjct: 135 ACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVS 194
Query: 171 WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
W LD EA+ +F + IE+V N T +V+ + + L K +H
Sbjct: 195 WSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCL 254
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ F S + + L+ Y KC + A+ +F ++ P N G W
Sbjct: 255 KMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEI--PTRNLGLW 296
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYS--------------------SCWCL--------D 174
QLH+ +KFGL + + + LIN+YS + W +
Sbjct: 46 QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNE 105
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
P A++ F RM + V+P+ + A R K VH ++G++ V + +
Sbjct: 106 APLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGS 165
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+L+D Y KC + A LF +M P N W+
Sbjct: 166 SLVDMYAKCGEIGDARHLFDEM--PERNVVSWS 196
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F QI + NS++RGY N A Y +M+ G PD F +P + K+C D+ +
Sbjct: 80 IFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLL 139
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMY--------------------SSCWCL---- 173
+++H+ + GL D ++ N++++MY + W
Sbjct: 140 REMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSG 199
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV---DESGF 226
+ A ++F M + + TL+ +L+A DL+ K +H V ESG
Sbjct: 200 FVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGR 259
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ L +++D YC C+ VS A LF VK + WN+
Sbjct: 260 VCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNS 299
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F + + + NS++ GY +A + M+V G +PD S+ +C I
Sbjct: 283 RKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQI 342
Query: 139 YVEK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------DQPD---------- 177
+ + S +K G + + LI MY++C L + P+
Sbjct: 343 SALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMV 402
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI IFY M + V P+ VL+A
Sbjct: 403 TGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSA 439
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 50/261 (19%)
Query: 52 TMRELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQIS-NPTIYTCNSIV 97
++R +K +H ++L L D C D+ R VF +Y NS++
Sbjct: 19 SLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLM 78
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGL 153
GY+ ++ H+ + ++ + +PD F FP++ K+ + ++ + +H+ +K G
Sbjct: 79 SGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGY 138
Query: 154 ASDSFLHNTLINMYS--------------------SCW-----CLDQPDEA---IKIFYR 185
D + ++L+ MY+ + W C Q EA +++F R
Sbjct: 139 VCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGR 198
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
ME +PN+V+L ++A +R L K +H+ + GF + + L+D Y KC
Sbjct: 199 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDC 258
Query: 246 VSRAWDLFVKM----LFPWNN 262
+ A ++F KM L WN+
Sbjct: 259 LEVAREVFQKMPRKSLVAWNS 279
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 34/230 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++ ++ NS+++GY K + MI++G P + S+ +C+
Sbjct: 263 REVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 322
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------WCLDQPD--------- 177
++ K +H I+ + +D +++ +LI++Y C + Q D
Sbjct: 323 RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMI 382
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+A++++ +M VKP+ VT +VL A ++ L K++H + ES
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 442
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQG 276
+ L + L+D Y KC A+ +F + P + W M + G G
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSI--PKKDVVSWTVMISAYGSHG 490
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 130/306 (42%), Gaps = 60/306 (19%)
Query: 12 RTPALSSDNSPLINLDNINNNNINSQYQAHFC--LVSLEKCSTMRELKQIHAQMLRTSLF 69
+T +LS + + I N N + + H C L+S + ++ + +QIHA ++++ L
Sbjct: 29 KTQSLSQEGT--ITPQNSPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQ 86
Query: 70 FDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116
P +++ VF + + T +S++ + A ++ M
Sbjct: 87 VIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRM 146
Query: 117 IVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--- 170
I + L PD +FPS K+CA + V K +H IK G D F+ ++L++MY+ C
Sbjct: 147 IGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDI 206
Query: 171 -----------------WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
W L + +EA+++F +E + N TL +V+
Sbjct: 207 KEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVC 266
Query: 206 ARARDLRTVKRVHK-----CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW 260
A L K++H D SGF + ++L+ Y KC + A+ +F ++ P
Sbjct: 267 GSATLLELGKQIHGLCFKTSYDLSGF-----VGSSLISLYSKCGLIEGAYRVFDEV--PI 319
Query: 261 NNYGQW 266
N G W
Sbjct: 320 KNLGMW 325
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 32/174 (18%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYS--------------------SCWCL-------- 173
+Q+H+ IK GL + + LIN YS + W
Sbjct: 74 QQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQN 133
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
++P AI+ F RM EN+ P+ + A A K VH V ++G+ V +
Sbjct: 134 EEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVG 193
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
++L+D Y KC + A ++F +M P N W S + +G H A ++
Sbjct: 194 SSLVDMYAKCGDIKEARNVFDEM--PHRNVVSW--SGMIYGYTQLGEHEEAMRL 243
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 38/208 (18%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--- 138
FS++S T + NS +RG N+ +A +H++ + GL P+ F FP L K+CA +
Sbjct: 11 FSKLSTLTWW--NSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHL 68
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------------- 176
+ +H+ +K SD ++ +++MY C +D
Sbjct: 69 TNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGF 128
Query: 177 ------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
D +F M + +P+A T++ + A A+ LR +K VH E+G +
Sbjct: 129 SQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADT 188
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ T + AY KC + A KM+F
Sbjct: 189 SVSNTWIAAYSKCGELQLA-----KMVF 211
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 48/252 (19%)
Query: 52 TMRELKQIHAQMLRTSLFFDP------------CADYHV-RLVFSQISNP--TIYTCNSI 96
++R LK +HA + T L D C + + ++VF I + + NS+
Sbjct: 168 SLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSL 227
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEKQLHSQAIKFG 152
+ Y + + +A Y ++ G PD SL SC A IY +H + G
Sbjct: 228 IACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIY-GFLIHGHGFQLG 286
Query: 153 LASDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIKIFY 184
SD L NTLI+MYS C W + + D+A+ +F
Sbjct: 287 CDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFN 346
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
ME KP+ VT++++++ + L + V + L+D Y KC
Sbjct: 347 AMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCG 406
Query: 245 FVSRAWDLFVKM 256
++ A ++F +
Sbjct: 407 SLNDAREIFYSL 418
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F+++++ ++PN T + A A+ L + +H V +S F+S + ++T ++
Sbjct: 35 KALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMV 94
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
D Y KC V A++LF KM P N W
Sbjct: 95 DMYVKCGKVDDAYNLFDKM--PVRNIASW 121
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 49/284 (17%)
Query: 29 INNNNINSQYQAHFC--LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+N N+ Y+ C L+S + ++R+ Q+HA +L+ L P +++ ++S+
Sbjct: 16 LNQNSFEQNYR-QICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQ 74
Query: 87 NP-------------TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
P + T +S++ + A F+ M+ G+ PD ++PS K
Sbjct: 75 LPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATK 134
Query: 134 SCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------------------- 170
+C + V K +H A+K G D F+ ++L++MY+ C
Sbjct: 135 ACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVS 194
Query: 171 WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
W LD EA+ +F + IE+V N T +V+ + + L K +H
Sbjct: 195 WSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCL 254
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ F S + + L+ Y KC + A+ +F ++ P N G W
Sbjct: 255 KMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEI--PTRNLGLW 296
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYS--------------------SCWCL--------D 174
QLH+ +KFGL + + + LIN+YS + W +
Sbjct: 46 QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNE 105
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
P A++ F RM + V+P+ + A R K VH ++G++ V + +
Sbjct: 106 APLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGS 165
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+L+D Y KC + A LF +M P N W+
Sbjct: 166 SLVDMYAKCGEIGDARHLFDEM--PERNVVSWS 196
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/210 (18%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + + + ++ GY + EA + + +++ + + F F S+ + C+
Sbjct: 180 ARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSS 239
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----DE------------ 178
+ + K +H +K S SF+ + LI++YS C ++ DE
Sbjct: 240 STFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSM 299
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+F M +KPN ++ ++VL A + A + + + + G
Sbjct: 300 LIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRDYGI 359
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
E +L+D + + A + +M
Sbjct: 360 EPETEHYASLVDLLGRAGKLQEAVSVIKQM 389
>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
Length = 883
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 52/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQM----------LRTSL--FFDPCADY-HVRLVFSQISNPTI 90
L CS++R+L ++IH ++ + T L + C R VF +I N +
Sbjct: 153 LGACSSLRDLEEGRRIHGRISSGEFQSGIVVETGLVKMYARCGRLREAREVFDRIENKDV 212
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
NS++ Y +A EM G+ F + +C+ + K++HS+A+
Sbjct: 213 ICWNSMIAAYAQGGHSAQARQLCEEMEGFGVKASDTTFAGILGACSSLEEGKKIHSRALA 272
Query: 151 FGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKI 182
GL+S + N LI+MY C LD + EA+++
Sbjct: 273 RGLSSSIIVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALEL 332
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK--CVDESGFWSHVELKTTLMDAY 240
+ +ME E ++P+ VT +VL+A + DL + +H + GF V L L++ Y
Sbjct: 333 YKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHARLLARKDGFSDGV-LVAALINMY 391
Query: 241 CKCKFVSRAWDLF-----VKMLFPWN 261
KC + + ++F K + WN
Sbjct: 392 VKCGRLDLSSEIFQSCKDTKAVVVWN 417
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 49/231 (21%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RL+ + I +P + + R + +LHH F Q R + +L K C +
Sbjct: 9 RLLSTAIIDPPDTSLQRLAR--LDDDLHHLQF--------QSPFQVRQTYAALLKHCGNA 58
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+++H+ + GLASD FL + L+ MY C +D
Sbjct: 59 AALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHALPRRSLFSWNFII 118
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+AI++F M+ +KP++ TL +VL A + RDL +R+H + F
Sbjct: 119 AAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGRRIHGRISSGEFQ 178
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN----YGQWAMSA 270
S + ++T L+ Y +C + A ++F ++ + WN+ Y Q SA
Sbjct: 179 SGIVVETGLVKMYARCGRLREAREVFDRIENKDVICWNSMIAAYAQGGHSA 229
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 49/258 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTC 93
L CS++ E K+IH++ L L + C + R VFS++ + +
Sbjct: 254 LGACSSLEEGKKIHSRALARGLSSSIIVQNALISMYGKCNELDAARRVFSKVRAHDVVSW 313
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ--A 148
+++ YT + EA Y +M +G+ PD+ F S+ +C+ D+ + + LH++ A
Sbjct: 314 TALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHARLLA 373
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDE-----------------------------A 179
K G SD L LINMY C LD E A
Sbjct: 374 RKDGF-SDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAA 432
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK-TTLMD 238
+ ++ M+ + P+ TL ++L+A A +DL ++VH + S S + L+
Sbjct: 433 VDLYDMMKQRGLDPDESTLSSILSACAELKDLEKGEQVHVEIIASRDCSQNPVVLNALIS 492
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y C + A +F +M
Sbjct: 493 MYASCGEIREAKAVFKRM 510
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 105/270 (38%), Gaps = 58/270 (21%)
Query: 47 LEKCSTMRELK---QIHAQMLRTS-------------LFFDPCADY-HVRLVFSQISNPT 89
L C+ +++L+ Q+H +++ + + C + + VF ++ N
Sbjct: 455 LSACAELKDLEKGEQVHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRD 514
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI 149
+ + ++ Y A Y M+V+G+ P ++ +C+ + + L +
Sbjct: 515 VVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEVTMLAVIAACSAM---ESLWEGIV 571
Query: 150 KFGLASDSFLHNT-----LINMYSSCWCLDQ----------------------------- 175
L F +T LI+MY+ C LD
Sbjct: 572 IHALTDSMFFTDTAVQAALISMYARCRRLDLACQVFRQVRHLESSANCWNAMLAAYSQLG 631
Query: 176 -PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
P+E I++++ M +K N T L A + +R R+H+ V S + S + LKT
Sbjct: 632 LPEEGIRLYWEMSSTGIKANEGTFAGALAACSMLGAVREGYRIHEQVSSSRYSSDLSLKT 691
Query: 235 TLMDAYCKCKFVSRAWDLFVKM---LFPWN 261
L+ Y KC V A+ +F ++ + WN
Sbjct: 692 ALVHMYAKCNRVDAAFHVFEQLQPDVVAWN 721
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/304 (19%), Positives = 114/304 (37%), Gaps = 60/304 (19%)
Query: 10 QTRTPALSSD-----NSPLINLDNINNNNINSQYQAHFCLVS-----LEKCSTMRELKQ- 58
QTR LS+ ++ L L ++++ + Q+Q+ F + L+ C L Q
Sbjct: 5 QTRRRLLSTAIIDPPDTSLQRLARLDDDLHHLQFQSPFQVRQTYAALLKHCGNAAALPQG 64
Query: 59 --IHAQMLRTSLFFDP-CADYHVRL------------VFSQISNPTIYTCNSIVRGYTNK 103
IHA ++ + L D D+ +++ VF + ++++ N I+ +
Sbjct: 65 RRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHALPRRSLFSWNFIIAAFAKN 124
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
+A + M G+ PD S+ +C+ D+ +++H + S +
Sbjct: 125 RHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGRRIHGRISSGEFQSGIVVE 184
Query: 161 NTLINMYSSCWCLDQPDE----------------------------AIKIFYRMEIENVK 192
L+ MY+ C L + E A ++ ME VK
Sbjct: 185 TGLVKMYARCGRLREAREVFDRIENKDVICWNSMIAAYAQGGHSAQARQLCEEMEGFGVK 244
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
+ T +L A L K++H G S + ++ L+ Y KC + A +
Sbjct: 245 ASDTTFAGILGA---CSSLEEGKKIHSRALARGLSSSIIVQNALISMYGKCNELDAARRV 301
Query: 253 FVKM 256
F K+
Sbjct: 302 FSKV 305
>gi|302787579|ref|XP_002975559.1| hypothetical protein SELMODRAFT_103498 [Selaginella moellendorffii]
gi|300156560|gb|EFJ23188.1| hypothetical protein SELMODRAFT_103498 [Selaginella moellendorffii]
Length = 547
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R F + ++ + ++++ Y K L EAF Y M +GL PDR + L +C
Sbjct: 182 ARKTFDGLKLKSLVSWTAMIQAYAEKGLDKEAFHLYRGMGQEGLQPDRVSYLLLLGTCDR 241
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW---------------CLDQ---- 175
+ V K++HSQ G D+ + L+ MY C C D+
Sbjct: 242 PEKLEVGKRIHSQLAAGGFERDTAVQIALVTMYGRCGDLEASTSVFSTIERSCDDEICWN 301
Query: 176 -----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
PDEA +F + + +KP+ + + +L L T + +H+ V ES
Sbjct: 302 AMLGAYGQNGHPDEAFALFRKFMLLGLKPSRPSFLTIL---GLCESLHTARTLHENVVES 358
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G ++T L+ Y KC + A +F M
Sbjct: 359 GLEQEFTIQTALISCYGKCGGLDDASKIFDGM 390
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 43/191 (22%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHVRL-VFSQISNP-TIYTCNSIVRGYTN 102
K+IH+Q+ + C D VFS I C + + G
Sbjct: 249 KRIHSQLAAGGFERDTAVQIALVTMYGRCGDLEASTSVFSTIERSCDDEICWNAMLGAYG 308
Query: 103 KNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHN 161
+N H EAF + + ++ GL P R F ++ C ++ + LH ++ GL + +
Sbjct: 309 QNGHPDEAFALFRKFMLLGLKPSRPSFLTILGLCESLHTARTLHENVVESGLEQEFTIQT 368
Query: 162 TLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVKP 193
LI+ Y C LD + EA+ +FY+M+ + +P
Sbjct: 369 ALISCYGKCGGLDDASKIFDGMEDHDVVSWTGIVETHARYGRGGEALLLFYKMQQDGSRP 428
Query: 194 NAVTLVNVLTA 204
N ++ +L+A
Sbjct: 429 NNISFTCILSA 439
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 122/312 (39%), Gaps = 53/312 (16%)
Query: 16 LSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSL---- 68
L+ ++ L LD+++ + S+ +A++ +L C+ ++ L +Q+H ++ R+
Sbjct: 2 LAKESDVLEFLDSLHKGKL-SRNEANYA-QALHACTKLKALELGRQVHFEIHRSGFEENL 59
Query: 69 --------FFDPCADY-HVRLVFSQIS--NPTIYTCNSIVRGYTNKNLHHEAFL-FYHEM 116
+ C R F ++S ++T +++ Y E L +H M
Sbjct: 60 QLGNHVINMYAKCGSLAEARAFFDKLSPERRNVFTWTAVMSAYAQTGHCKETALHLFHRM 119
Query: 117 IVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173
++G+ P+ F + ++C + + LH A++ G DS + L+ Y C L
Sbjct: 120 QLEGVRPNLITFAVVLEACDSSRFLDDARLLHKLAMENGFDGDSVVGTILVRTYVLCKSL 179
Query: 174 DQP----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
D EA ++ M E ++P+ V+ + +L
Sbjct: 180 DDARKTFDGLKLKSLVSWTAMIQAYAEKGLDKEAFHLYRGMGQEGLQPDRVSYLLLLGTC 239
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQ 265
R L KR+H + GF ++ L+ Y +C + + +F + ++
Sbjct: 240 DRPEKLEVGKRIHSQLAAGGFERDTAVQIALVTMYGRCGDLEASTSVFSTIERSCDDEIC 299
Query: 266 W-AMSATVGPQG 276
W AM G G
Sbjct: 300 WNAMLGAYGQNG 311
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 38/261 (14%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--PCADYH-VRLVFSQISNPTIYTCNS 95
Q C ++E S M+E ++ ++L D H R +F +IS P++ T N+
Sbjct: 51 QEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNT 110
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG 152
++ GY + H + + M Q + PDR + SC+ + + +Q+HS +++F
Sbjct: 111 LLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFL 170
Query: 153 LASDSFLHNTLINMYSSCWCLD----------QPD------------------EAIKIFY 184
L +D F+ + L++MYS C + + D EA F
Sbjct: 171 LHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFK 230
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+M + P + +++ + +R + +++H V + G+ +V + + L+D Y KC
Sbjct: 231 QMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCG 290
Query: 245 FVSRAWDLF----VKMLFPWN 261
+ A F +K + WN
Sbjct: 291 NMDDARLFFDTMMMKNIVAWN 311
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW- 171
M+ +G+ PD + F SL K+CA +Q H A+K G A ++ TLINMY+ C
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD 188
Query: 172 --------------CL-------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
C+ P EA+ +F M+ + +KP +VTL++VL+A
Sbjct: 189 VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSA 248
Query: 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
A L + +H + + S V++ T L+D Y KC + A +F M
Sbjct: 249 CALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 48/257 (18%)
Query: 42 FCLVSLEK-CSTMR---ELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQ 84
+ VSL K C++ R E +Q H ++ + C D R++F +
Sbjct: 139 YTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDR 198
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
+ + + N+++ +L EA + + EM +GL P S+ +CA + +
Sbjct: 199 MDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG 258
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
+ +H K L S ++ LI+MY+ C L+
Sbjct: 259 RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EAI +F M+ + +KP+ VT + VL A + + + + + E G S ++
Sbjct: 319 GYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHY 378
Query: 234 TTLMDAYCKCKFVSRAW 250
+ D + + RA+
Sbjct: 379 GCVTDLLARSGQLERAY 395
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F RM E V P+ T V++L A A AR ++ H ++G H + TL++ Y
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA 184
Query: 242 KCKFVSRAWDLFVKM 256
+C V A +F +M
Sbjct: 185 ECGDVRAARVMFDRM 199
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 50/285 (17%)
Query: 40 AHFCLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFS 83
A C L C ++ L +Q+HA ++ ++ + C R VF+
Sbjct: 343 AFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFN 402
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---V 140
++ + + N+++ GY+ ++ EA + EM + P +F SL A +Y +
Sbjct: 403 LMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLEL 462
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL------- 173
Q+H IK+G++ D F + LI++YS C W
Sbjct: 463 SNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQ 522
Query: 174 -DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ +E++K++ +++ +KPN T V+TA + LR ++ H V + GF +
Sbjct: 523 QSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFV 582
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
TL+D Y K + A F+ W + W +M AT G
Sbjct: 583 ANTLVDMYAKSGSIEEAHKAFIST--NWKDTACWNSMIATYAQHG 625
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RLVF +I + I ++ GYT ++ + E+ Y + + L P+ F F ++ + ++I
Sbjct: 499 RLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNI 558
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMY--------------------SSCWCL-- 173
+Q H+Q IK G D F+ NTL++MY ++CW
Sbjct: 559 ASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMI 618
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ ++A+++F M +E +KPN VT V VL+A
Sbjct: 619 ATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSA 655
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 44/241 (18%)
Query: 57 KQIHAQMLRTSLFFDPCA-----DYHV--------RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH +LR+ + D D++ R +F ++ + + + +++ G
Sbjct: 262 KQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQN 321
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ H +A + EM G PD F S+ SC + +Q+H+ AIK + +D F+
Sbjct: 322 SFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVK 381
Query: 161 NTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVK 192
N LI+MY+ C L D+ EA+ +F M +
Sbjct: 382 NGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSS 441
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P + V++L A L ++H + + G + L+D Y KC V A +
Sbjct: 442 PTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLV 501
Query: 253 F 253
F
Sbjct: 502 F 502
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 32/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSC 135
H +F +S+ + T +S+V YT+ + EA LF M P+ ++ S+ ++C
Sbjct: 92 HANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRAC 151
Query: 136 ---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------ 174
+ Q+H +K G D ++ +LI+ Y+ C+D
Sbjct: 152 TQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWT 211
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ ++K+F +M+ +V P+ L +VL+A + L K++H V S
Sbjct: 212 TIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRS 271
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G V + +D Y KC V LF +M+
Sbjct: 272 GIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMV 304
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 38/222 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R V + + +I N+++ G N EA + +++ G P F F S+ C
Sbjct: 581 RKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRP 640
Query: 137 -DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQ--------PD--------- 177
+ KQ+H +K L D+ L +L+ +Y C L+ PD
Sbjct: 641 VSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTA 700
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+++ +F+RM +V+ + T +VL A + L K +H + +SG
Sbjct: 701 TISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSG 760
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
F S+ + LMD Y KC V ++++F ++ + PWN+
Sbjct: 761 FVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNS 802
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R + +I + N+++ Y+ L E F Y +M QGL+P R F S+ + A++
Sbjct: 278 RTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANM 337
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+Q+H+ A+K GL ++ F+ ++LIN+Y C+
Sbjct: 338 TAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAIL 397
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+E I++F M +++ + T V+VL A L ++VH ++G
Sbjct: 398 YGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMD 457
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + + ++D Y K + A LF VK WN
Sbjct: 458 ADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWN 495
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 32/207 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
+ +FS I + N+++ G + EA M G+ D F + +C++I
Sbjct: 480 KALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNI 539
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ KQ+HS +IK+ + S+ + ++LI++YS ++
Sbjct: 540 WAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALI 599
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ DEAI++F ++ + KP+ T ++L+ R K+VH +S
Sbjct: 600 TGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAIL 659
Query: 228 SH-VELKTTLMDAYCKCKFVSRAWDLF 253
+ L +L+ Y KCK + A L
Sbjct: 660 NQDTSLGISLVGIYLKCKLLEDANKLL 686
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 24/237 (10%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNP 88
V L CS + L +Q+H +L++ + C + R +F I+ P
Sbjct: 162 VVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACP 221
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
S++ GY + +A + M G +PD+ ++ + A + +
Sbjct: 222 DTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLL 281
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+ + S + N +I YS LD E ++ M+ + + P T ++L+A A
Sbjct: 282 KRIRMTS-TVAWNAVIASYSQSG-LDS--EVFGLYKDMKKQGLMPTRSTFASILSAAANM 337
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+++H + G ++V + ++L++ Y K +S A +F K + WN
Sbjct: 338 TAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWN 394
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 126/316 (39%), Gaps = 51/316 (16%)
Query: 47 LEKCSTMRELKQIHAQMLR-TSLFFDP--------------CADY-HVRLVFSQISNPTI 90
L+ CS ++ L+Q A R S F+P C D R F +
Sbjct: 406 LQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDV 465
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ S++ Y+++N EA +H M ++G+ P+ F ++ +C + + + LHS+
Sbjct: 466 ISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSR 525
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+ G SD F+ N L++MYS +D EA
Sbjct: 526 VVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHEA 585
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++++ R+ +E +P + L + D+ + +H + S F+ + L LM+
Sbjct: 586 LEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNV 645
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLF 299
Y KC + A +F +M N W + +G GR + A ++ + + +
Sbjct: 646 YAKCGELEEARLVFDQM--TEKNEVSW--TTMIGGYAQNGRPAEALELYKAMDVQPNFIA 701
Query: 300 FFSMLKKVHVPGVLIQ 315
F ++ G L++
Sbjct: 702 FVPVISSCADLGALVE 717
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 39/220 (17%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R +F + T+ T N+++ Y + EA + M P
Sbjct: 43 LYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRMDAP---PSSIT 99
Query: 128 FPSLFKSCA---DIYVEKQLHSQ--AIKFGLASDSFLHNTLINMYSSCWCLDQPD----- 177
F S+ +C D+ K +H Q A + +D L N+L+ MY C L+ +
Sbjct: 100 FTSVLGACCSPDDLETGKAIHRQIGASSPQIQADEILQNSLVTMYGKCGSLEDAERVFHG 159
Query: 178 -----------------------EAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRT 213
AI++F M E V+P+ +T VLTA + DL T
Sbjct: 160 IRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLET 219
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
R+H + G S + + T L+D Y K F A +F
Sbjct: 220 GMRIHALIRSKGVESAM-VSTGLIDLYGKWGFFEDALQVF 258
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 59/299 (19%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-- 78
+ L+ + N+I FC V ++ CS + L + +H++++ T D +
Sbjct: 491 MELEGVEPNSIT------FCTV-IDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVS 543
Query: 79 -----------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
R+VF I + ++ T HEA Y + ++G P +
Sbjct: 544 MYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPI 603
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------- 175
F + SC D+ + +H D L N L+N+Y+ C L++
Sbjct: 604 FSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEEARLVFDQMT 663
Query: 176 -------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
P EA++++ M +V+PN + V V+++ A L +R
Sbjct: 664 EKNEVSWTTMIGGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVEGQR 720
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275
VH + ++G ++ + T L++ Y KC + A + F P + G W AT Q
Sbjct: 721 VHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCP--DAGAWNSMATAYAQ 777
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 34/159 (21%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVF Q++ + +++ GY EA Y M VQ P+ F + SCA
Sbjct: 654 EARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAMDVQ---PNFIAFVPVISSCA 710
Query: 137 DI--YVEKQ-LHSQAIKFGLASDSFLHNTLINMYSSC-------------WCLD------ 174
D+ VE Q +H++ GL ++ + L+NMY+ C +C D
Sbjct: 711 DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNS 770
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ ++++ M ++ V+PN +TL++VL A
Sbjct: 771 MATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVA 809
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLIN 165
A + +M +GL + F + +C+ D K + + GL D L + +++
Sbjct: 285 ALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQDGILS 344
Query: 166 MYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKPNAVT 197
+++ C L EA+++++ M+IE P+ +
Sbjct: 345 LHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELYHCMDIE---PDDIA 401
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L NVL A +R ++L + VH + F + ++T L+D Y KC ++ A F
Sbjct: 402 LSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTF 457
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L KQIHA++L+ +F+ C + ++FS++
Sbjct: 75 LQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVR 134
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+Y+ +I+ L EA + + EM+ + PD F+ P++ K+C + + +H
Sbjct: 135 NVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVH 194
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+K GL F+ ++L +MY C LD +
Sbjct: 195 GYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNE 254
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++ M E ++P VT+ L+A A + K+ H +G L T+ +
Sbjct: 255 EAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNL 314
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ YCK + A +F +M+ WN
Sbjct: 315 NFYCKVGLIEYAEMIFDRMIEKDVVTWN 342
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 37/219 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF +I + N+++ GY ++ EA +M +G+ P R + + A+
Sbjct: 226 RKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANM 285
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
I KQ H+ AI GL D+ L + +N Y ++ +
Sbjct: 286 DGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLI 345
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-KCVDESGF 226
+AI + M +EN+K + VTL +++A AR ++L+ K V C+ S F
Sbjct: 346 SGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHS-F 404
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S + L +T +D Y C + A +F K L WN
Sbjct: 405 ASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWN 443
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY-------------HVRLVFSQISNPT 89
CL + + E KQ HA + L D + ++F ++
Sbjct: 278 CLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKD 337
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ T N ++ GY + L +A M ++ L D +L + A ++ + K++
Sbjct: 338 VVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQC 397
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
I+ ASD L +T ++MY++C + E
Sbjct: 398 YCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGE 457
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A ++FY M++E+V PNA+T ++ + R + K + + SG + ++ TT+M+
Sbjct: 458 AFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMN 517
Query: 239 A 239
Sbjct: 518 G 518
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCAD 137
VF + + N+++ Y L EAF ++EM ++ + P+ + + F
Sbjct: 430 VFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQ 489
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ K++ SQ G+ + T++N C +EAI +M+ ++PNA +
Sbjct: 490 VNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGC---SEEAILFLRKMQESGLRPNAFS 546
Query: 198 LVNVLTARARARDLRTVKRVHK-CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ L+A + L + VH + S V ++T+L+D Y KC +++A +F
Sbjct: 547 ITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVF 603
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 50/203 (24%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGY 100
+ ++S + + E K+I +QM + +F P + + +++ G
Sbjct: 478 NLIILSFLRNGQVNEAKEIFSQMQSSGIF------------------PNLVSWTTMMNGL 519
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDS 157
EA LF +M GL P+ F +C A ++ + +H I+ S S
Sbjct: 520 VQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSS 579
Query: 158 FLHNT-LINMYSSCW-------------CLDQP---------------DEAIKIFYRMEI 188
L T L++MY+ C C D P EAI + R+E
Sbjct: 580 VLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLED 639
Query: 189 ENVKPNAVTLVNVLTARARARDL 211
+KP+ +T ++L+A A D+
Sbjct: 640 TGIKPDNITFTSLLSACNHAGDV 662
>gi|326487434|dbj|BAJ89701.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 633
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 92/229 (40%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D R VF + + + N+I+ Y L EA +M G DRF
Sbjct: 292 MYGKCGDMGGCRAVFETMVDRDQVSWNTIISSYVRLGLCEEALDMVIQMQQCGFTVDRFT 351
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
S +C ADI H I+ L +D+ + L++MY C ++
Sbjct: 352 LGSGVAACAHLADIDSGSAFHGYLIRRVLDTDAIRGSALVDMYGKCGLMEHARLVFDRMD 411
Query: 175 ------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
Q D A+K+F +ME N+KPN T VN+L R ++
Sbjct: 412 ERNYVAWDALLSGYVENGQVDLALKVFRQMESANIKPNQHTFVNLLKLCGNRRYTEYGRQ 471
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+H + +V L+T L+D Y KC + A LFV+M L WN
Sbjct: 472 IHAHTIKVIHQMNVVLETELIDMYAKCGCIEVARLLFVRMNERNLISWN 520
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H RLVF ++ ++++ GY A + +M + P++ F +L K C
Sbjct: 402 HARLVFDRMDERNYVAWDALLSGYVENGQVDLALKVFRQMESANIKPNQHTFVNLLKLCG 461
Query: 137 DI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ Y E +Q+H+ IK + L LI+MY+ C C++
Sbjct: 462 NRRYTEYGRQIHAHTIKVIHQMNVVLETELIDMYAKCGCIEVARLLFVRMNERNLISWNA 521
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
QP +I I+ +ME+ ++P+ TL +L+ LR +++H V + G
Sbjct: 522 LLSGYVGDGQPGASINIYRQMELACIRPDQYTLAGLLSLCRYQGLLRYGRQIHAHVIKIG 581
Query: 226 FWSHVELKTTLMDAYCKCK 244
++V L+T L+ Y +C+
Sbjct: 582 SDTNVVLQTLLVHMYVRCR 600
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 5 LPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQML 64
L + Q + + + +NL + N ++Y T++ + Q++ +L
Sbjct: 435 LKVFRQMESANIKPNQHTFVNLLKLCGNRRYTEYGRQI------HAHTIKVIHQMNV-VL 487
Query: 65 RTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121
T L + C V RL+F +++ + + N+++ GY + Y +M + +
Sbjct: 488 ETELIDMYAKCGCIEVARLLFVRMNERNLISWNALLSGYVGDGQPGASINIYRQMELACI 547
Query: 122 IPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
PD++ L C + +Q+H+ IK G ++ L L++MY C
Sbjct: 548 RPDQYTLAGLLSLCRYQGLLRYGRQIHAHVIKIGSDTNVVLQTLLVHMYVRC 599
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E +++F RM + + + L +VL A AR +D T++ H V + HV + T L+
Sbjct: 130 EVLELFCRMRRDGLPVSKFMLPSVLKACARLQDSGTLRAAHAVVVKCALCRHVVVATALV 189
Query: 238 DAYCKCKFVSRAWDLFVKM 256
AY + A + F +M
Sbjct: 190 SAYVGFGLMDDAANAFAEM 208
>gi|302757017|ref|XP_002961932.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
gi|300170591|gb|EFJ37192.1| hypothetical protein SELMODRAFT_24361 [Selaginella moellendorffii]
Length = 282
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
+ VF + + + + N ++ Y EA + +M ++GL PD+F F S+ +C+
Sbjct: 18 KSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSAS 77
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------- 178
+ K +H+ G S F+ TLI MY C C+++
Sbjct: 78 EALAEGKAIHALIAASGFDSSCFVATTLIKMYGCCRCMEEAKAVFDRVASKDIVLWTALL 137
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
A+ ++ M++E ++ N T ++++ A A L ++VH G+
Sbjct: 138 TAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYD 197
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
V + TTL+D Y KC V A +F K + PWN
Sbjct: 198 KDVIVGTTLVDFYSKCHDVDTARSVFDGIEGKDIVPWN 235
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ VF ++++ I +++ Y+ A L Y M ++G+ +RF F S+ CA
Sbjct: 117 EAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCA 176
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
D + +++H + G D + TL++ YS C D A +F +E +++ P
Sbjct: 177 DAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKC---HDVDTARSVFDGIEGKDIVP 233
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVD 222
V ++T AR R R+++ +D
Sbjct: 234 WNV----MITGFARNGHGREAVRLYQKMD 258
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 109/263 (41%), Gaps = 57/263 (21%)
Query: 56 LKQIHAQMLRTSLFFDP------------CAD----YHVRLVFSQISNPTIYTCNSIVRG 99
LKQIH +L + +F+ C + R + Q+ +I +S++
Sbjct: 17 LKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGH 76
Query: 100 YT-----NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK--QLHSQAIKFG 152
++ N+ L +FL Y M G+IP R FP L K+ + Q H+ +KFG
Sbjct: 77 FSGGITLNRRL---SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFG 133
Query: 153 LASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFY 184
L SD F+ N+LI+ YSS D EA+ F
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFV 193
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKC 243
M+ V N +T+V+VL A + D+R + VH E+G V + ++L+D Y KC
Sbjct: 194 EMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253
Query: 244 KFVSRAWDLFVKMLFPWNNYGQW 266
A +F +M P N W
Sbjct: 254 SCYDDAQKVFDEM--PSRNVVTW 274
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 47/245 (19%)
Query: 58 QIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
Q HA +++ L DP D+ RL F + + T +++ G+
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRL-FDGAEDKDVVTWTAMIDGFVRN 182
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFG-LASDSFL 159
EA +++ EM G+ + S+ K+ D+ + +H ++ G + D F+
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFI 242
Query: 160 HNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENV 191
++L++MY C C D D+ + +F M +V
Sbjct: 243 GSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV 302
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
PN TL +VL+A A L +RVH + ++ + TTL+D Y KC + A
Sbjct: 303 APNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAIL 362
Query: 252 LFVKM 256
+F ++
Sbjct: 363 VFERL 367
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF ++ + + T +++ GY + L + EM+ + P+ S+ +CA +
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ +++H IK + ++ TLI++Y C CL +EAI +F R+ +NV
Sbjct: 322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCL---EEAILVFERLHEKNVY-TWTA 377
Query: 198 LVNVLTARARARD 210
++N A ARD
Sbjct: 378 MINGFAAHGYARD 390
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF + + T S++ G + +H E + M +G+ P+ F F S+ + A
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ + +++H+Q++KFG S F+ N+L+NMY+ C ++
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+++F+ K T V+ A + L +++H CV + GF
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ T L DAY KC ++ A ++F
Sbjct: 337 GNVMTALADAYSKCGELADALNIF 360
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 36/205 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N ++ Y + + E + G++ D + K+C D + +QLH +K
Sbjct: 68 NRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVK 127
Query: 151 FGLASDSFLHNT-LINMYSSCWCLDQP----------------------------DEAIK 181
G T L++MY C + + E +
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F+RM E + PN T +VL+A A L +RVH + G S V + +LM+ Y
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA 247
Query: 242 KCKFVSRAWDLF----VKMLFPWNN 262
KC V A +F + + WN
Sbjct: 248 KCGLVEDAKSVFNWMETRDMVSWNT 272
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF + + T S++ G + +H E + M +G+ P+ F F S+ + A
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ + +++H+Q++KFG S F+ N+L+NMY+ C ++
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+++F+ K T V+ A + L +++H CV + GF
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ T L DAY KC ++ A ++F
Sbjct: 337 GNVMTALADAYSKCGELADALNIF 360
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 36/205 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N ++ Y + + E + G++ D + K+C D + +QLH +K
Sbjct: 68 NRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVK 127
Query: 151 FGLASDSFLHNT-LINMYSSCWCLDQP----------------------------DEAIK 181
G T L++MY C + + E +
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
+F+RM E + PN T +VL+A A L +RVH + G S V + +LM+ Y
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA 247
Query: 242 KCKFVSRAWDLF----VKMLFPWNN 262
KC V A +F + + WN
Sbjct: 248 KCGLVEDAKSVFNWMETRDMVSWNT 272
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA-----------DYHVR------LVFSQISNPT 89
+ C T+R+L QIHA +++ D A D H R +F+Q+
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 90 IYTCNSIVRGYTNKNLHHEAF---LFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
++ N+I+RG++ + LFY M + + P+RF FPS+ K+CA I KQ
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+H A+K+G D F+ + L+ MY C + +A +FY+ IE
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFM---KDARVLFYKNIIE 192
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
NT+I+ YS +A+++F M+ +++PN VTLV+VL A +R L + +H
Sbjct: 243 NTMISGYSLNGFFK---DAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLY 299
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
++SG L + L+D Y KC + +A +F ++ P N W+
Sbjct: 300 AEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL--PRENVITWS 344
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R++F ++ ++ + N+++ GY+ +A + EM + P+ S+ +
Sbjct: 228 RMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRL 287
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ + + LH A G+ D L + LI+MYS C ++
Sbjct: 288 GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMI 347
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR-VHKCVDESGF 226
Q +AI F +M V+P+ V +N+LTA + + +R + V G
Sbjct: 348 NGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGL 407
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E ++D + + A + + M
Sbjct: 408 EPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 48/263 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SC 135
RLVF + + + + N+++ G HEAF + +M +G +PD + SL S
Sbjct: 289 RLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVST 348
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
K++H A++ GL SD + + ++MY C +D
Sbjct: 349 GAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMI 408
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+ +F +M E P+A T VN+L+A L VK VH ++G
Sbjct: 409 GGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL- 467
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+ + L+ Y KC A +F M+ N W TV GL +H H+
Sbjct: 468 VDLRVGNALVHMYAKCGNTMYAKQVFDDMVE--RNVTTW----TVMISGLA-QHGCGHEA 520
Query: 288 SGPCPKKAHKLFFFSMLKKVHVP 310
F ML++ VP
Sbjct: 521 FS---------LFLQMLREGIVP 534
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 50/255 (19%)
Query: 57 KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRGYTNK 103
K+IHA ++++ D C +L+F ++ + + ++ G +
Sbjct: 50 KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHY 109
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKFGLASDSFLH 160
EAF + +M +G IP+ + + S+ S + K++HS A+ GLA D +
Sbjct: 110 GRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG 169
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N L++MY+ +D + EA +F +ME
Sbjct: 170 NALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL 229
Query: 193 PNAVTLVNVLTARA--RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
PN T +++L A A L VK VHK ++GF S + + L+ Y KC + A
Sbjct: 230 PNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDAR 289
Query: 251 DLFVKM----LFPWN 261
+F M + WN
Sbjct: 290 LVFDGMCDRDVISWN 304
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ + VF + + T ++ G HEAF + +M+ +G++PD + S+ +CA
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA 547
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
K++HS A+ GL SD + N L++MY+ C +D
Sbjct: 548 STGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTV 607
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F +M++E KPN + V VL+A
Sbjct: 608 MIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSA 646
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CAD 137
+L+F +++ + T N+++ G + EA + +M +G PD F ++ + +
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGE 449
Query: 138 IYVE--KQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC--- 172
+E K++HS AI GL D + N L++MY+ C W
Sbjct: 450 EALEWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMI 508
Query: 173 --LDQ---PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
L Q EA +F +M E + P+A T V++L+A A L VK VH +G
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
S + + L+ Y KC V A +F ML
Sbjct: 569 SDLRVGNALVHMYAKCGSVDDARRVFDDML 598
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 35/201 (17%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFG 152
++ GY +A Y +M +G P+ + S+ K+C + K++H+ I+ G
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 153 LASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFY 184
SD + L+NMY C +D + EA F
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+M+ E PN+ T V++L A A A L VK VH +G + + L+ Y K
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180
Query: 245 FVSRAWDLFVKM----LFPWN 261
+ A +F M +F W
Sbjct: 181 SIDDARVVFDGMVERDIFSWT 201
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 109/263 (41%), Gaps = 57/263 (21%)
Query: 56 LKQIHAQMLRTSLFFDP------------CAD----YHVRLVFSQISNPTIYTCNSIVRG 99
LKQIH +L + +F+ C + R + Q+ +I +S++
Sbjct: 17 LKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGH 76
Query: 100 YT-----NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK--QLHSQAIKFG 152
++ N+ L +FL Y M G+IP R FP L K+ + Q H+ +KFG
Sbjct: 77 FSGGITLNRRL---SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFG 133
Query: 153 LASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFY 184
L SD F+ N+LI+ YSS D EA+ F
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFV 193
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKC 243
M+ V N +T+V+VL A + D+R + VH E+G V + ++L+D Y KC
Sbjct: 194 EMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253
Query: 244 KFVSRAWDLFVKMLFPWNNYGQW 266
A +F +M P N W
Sbjct: 254 SCYDDAQKVFDEM--PSRNVVTW 274
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 47/245 (19%)
Query: 58 QIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
Q HA +++ L DP D+ RL F + + T +++ G+
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRL-FDGAEDKDVVTWTAMIDGFVRN 182
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFG-LASDSFL 159
EA +++ EM G+ + S+ K+ D+ + +H ++ G + D F+
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFI 242
Query: 160 HNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENV 191
++L++MY C C D D+ + +F M +V
Sbjct: 243 GSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV 302
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
PN TL +VL+A A L +RVH + ++ + TTL+D Y KC + A
Sbjct: 303 APNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAIL 362
Query: 252 LFVKM 256
+F ++
Sbjct: 363 VFERL 367
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF ++ + + T +++ GY + L + EM+ + P+ S+ +CA +
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ +++H IK + ++ TLI++Y C CL +EAI +F R+ +NV
Sbjct: 322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCL---EEAILVFERLHEKNVY-TWTA 377
Query: 198 LVNVLTARARARD 210
++N A ARD
Sbjct: 378 MINGFAAHGYARD 390
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 57/309 (18%)
Query: 46 SLEKCSTMRELKQIHAQMLRTS-------------LFFDPCADYHVRLVFSQISNPTIYT 92
SL C + +++Q+HAQ+ ++ + A + +F +S Y+
Sbjct: 59 SLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYS 118
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAI 149
+ IV GY F + E++ G D + P + ++C D+ + +H +
Sbjct: 119 WSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITL 178
Query: 150 KFGLASDSFLHNTLINMYSSC-------------WCLDQ---------------PDEAIK 181
K GL F+ TL++MY+ C W D P E++
Sbjct: 179 KCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLV 238
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F RM + + P+ V LV V+ A A+ + K +H ++ +G+ V L T ++D Y
Sbjct: 239 FFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYA 298
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI------SGPCPKKA 295
KC V A +F +M N W SA + G G+ A ++ SG P
Sbjct: 299 KCGSVESARWIFDRMQV--RNVITW--SAMIAAYGYHGQGEKALELFPMMLRSGILP--- 351
Query: 296 HKLFFFSML 304
+++ F S+L
Sbjct: 352 NRITFVSLL 360
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 31/207 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF ++S + +++ GY L EA Y EM G++P ++ S+ +C
Sbjct: 96 ARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTK 155
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------WC-------- 172
+ + +H Q K G S++F+ N LI++Y C +C
Sbjct: 156 TELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTL 215
Query: 173 ------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D A+ IF M++ + P++VT+ ++L A + DLR K++H + ++G
Sbjct: 216 ISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGM 275
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
++ +L+D Y K + A +F
Sbjct: 276 SLDYIMEGSLLDLYVKSGDIEEALQIF 302
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
+ I + + S++ GY EA + EM G+ PD S +CA I
Sbjct: 402 ILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKA 461
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ Q+H++ G ++D + N L+ +Y+ C +
Sbjct: 462 VHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISG 521
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+EA+K+F +M+ K N T V+ ++A A D++ K++H V ++G+ S
Sbjct: 522 FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSE 581
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
E+ L+ Y KC + A F +M
Sbjct: 582 TEISNALISLYGKCGSIEDAKMDFFEM 608
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 48/267 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD-----PCADYHVR--------LVFSQISNPTI 90
L + +R+ KQ+H+ +L+ + D D +V+ +F +
Sbjct: 251 LAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNV 310
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
N ++ Y + ++F ++ M+ G+ P++F +P + ++C +I + +Q+HS
Sbjct: 311 VLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSL 370
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK G SD ++ LI+MYS LD+ EA
Sbjct: 371 TIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEA 430
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ F M+ + P+ + L + ++A A + + ++H V SG+ + V + L+
Sbjct: 431 LETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYL 490
Query: 240 YCKCKFVSRAWDLFV----KMLFPWNN 262
Y +C A+ F K WN
Sbjct: 491 YARCGISKEAFSSFEAIEHKEGITWNG 517
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DI 138
F I + T N ++ G+ L+ EA + +M G + F F S + A DI
Sbjct: 504 FEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADI 563
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------------- 177
KQ+H++ IK G S++ + N LI++Y C ++
Sbjct: 564 KQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCC 623
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F +M+ + +KP+ VT V VLTA
Sbjct: 624 SQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTA 657
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 28/144 (19%)
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSS--------------------CWCL--------D 174
++H++AI GL+ + N LI++Y+ W
Sbjct: 63 EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
+EA++++ M V P L ++L+A + + + +H V + GF+S +
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLF 258
L+ Y +C+ A +F ML+
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLY 206
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
YH RLVF + + ++ NS++ GY L++EAF +++M ++PD F +L K
Sbjct: 75 YHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVS 134
Query: 136 AD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
++ ++ K +H ++I+ G SD+ + N++++MY C +E+ K+F M I N
Sbjct: 135 SELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKC---GNFEESRKVFDEMTIRN 189
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCAD 137
R VF ++ +++ +++ GY EA + +M ++ G+ P+R S+ +C+
Sbjct: 288 RRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSS 347
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
+ +Q+H A++ L ++ L N LI+MYS C LD
Sbjct: 348 FSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSS 407
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DES 224
+ EAI ++ +M ++P+ +T V +L+A +R+ + ++ V ++
Sbjct: 408 MISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDY 467
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G +E+ ++D + + A D F+K +
Sbjct: 468 GIEPTLEIFACIVDMLGRAGQLDPALD-FIKAM 499
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
FL N+LIN Y+ + EA ++F +M +V P+ TL + + L + K +
Sbjct: 90 FLWNSLINGYAKNRLYN---EAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSI 146
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
H GF S + ++M YCKC + +F +M N G W
Sbjct: 147 HGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTI--RNSGSW 193
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 44/249 (17%)
Query: 59 IHAQMLRTSLF----------FDPCA-DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
IHA +L++ LF + C R VF +I +P + +S+V Y+N +
Sbjct: 26 IHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPR 85
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMY 167
+A + M + + F+ P + K D QLH+ A+ GL D F+ N L+ MY
Sbjct: 86 DALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANALVAMY 145
Query: 168 SSCWCLDQP----DE-------------------------AIKIFYRMEIENVKPNAVTL 198
+D+ DE A+K+F M V+PN
Sbjct: 146 GGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGF 205
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
V+ A +RDL ++VH V +G+ V L+D Y K + A +F K+
Sbjct: 206 SCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPE 265
Query: 257 --LFPWNNY 263
+ WN +
Sbjct: 266 TDVVSWNAF 274
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 109/260 (41%), Gaps = 49/260 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQIS 86
C+V+ C+ R+L +++HA ++RT D D + +L VF ++
Sbjct: 207 CVVN--ACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP 264
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
+ + N+ + G A +M GL+P+ F S+ K+CA + +Q
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQ 324
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
+H +K SD+++ L++MY+ LD Q
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQ 384
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ +F RM E N TL VL + A + ++VH ++ GF S +
Sbjct: 385 HAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNG 444
Query: 236 LMDAYCKCKFVSRAWDLFVK 255
L+D+Y KC ++ A+ +F K
Sbjct: 445 LIDSYWKCDCLNYAYRVFEK 464
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 101/263 (38%), Gaps = 50/263 (19%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTI 90
SLE S R Q+HA + D C +Y R VF + + I
Sbjct: 415 ASLEAISDTR---QVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYR-VFEKHGSYDI 470
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
S++ + + +A + EM+ +GL PD F+ SL +CA + KQ+H+
Sbjct: 471 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAH 530
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK SD F N L+ Y+ C ++ D A
Sbjct: 531 LIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRA 590
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMD 238
+ +F+RM E++ PN +T+ +VL A A + KR + E G E ++D
Sbjct: 591 LDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMID 650
Query: 239 AYCKCKFVSRAWDLFVKMLFPWN 261
+ + A +L M F N
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQTN 673
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R +F + N + + +++ GY + EA + ++ +G PD F S+ SC
Sbjct: 269 ARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGS 328
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------DEAIK---- 181
A I+ +Q+H+ AIK L SD ++ N+LI+MY+ C L + D+AI
Sbjct: 329 LAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAM 388
Query: 182 ---------------IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+F +M ++KP+ +T V++L + + K++H + +SG
Sbjct: 389 IEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGT 448
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ ++L+D Y K V A +F M + WN
Sbjct: 449 SLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWN 487
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 44/196 (22%)
Query: 57 KQIHAQMLRTSLFFDPCADYHVRLVFSQIS-------------NPTIYTCNSIVRGYTNK 103
KQIH ++++ D A + V+S+ S N + N+++ G
Sbjct: 437 KQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQN 496
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCADIYVEKQLHSQAIKFGLASDSFLH 160
EA ++++ V GL P+ F F +L + ++ +Q H+Q IK G SD +
Sbjct: 497 EQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVS 556
Query: 161 NTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVK 192
N LI+MY+ C + Q +EA+ +F M V+
Sbjct: 557 NALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVE 616
Query: 193 PNAVTLVNVLTARARA 208
PN VT V VL+A A A
Sbjct: 617 PNYVTFVGVLSACAHA 632
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 51/271 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQIS 86
C L C ++ + +Q+HA ++ +L D R VF ++
Sbjct: 319 CASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALA 378
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCADIYVEKQ 143
+ N+++ GY+ A + +M L P F SL S + I + KQ
Sbjct: 379 EDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQ 438
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSS--------------------CWCL--------DQ 175
+H +K G + D + ++LI++YS W +Q
Sbjct: 439 IHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQ 498
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+EA+K+F ++++ + PN T V ++T + + ++ H + ++G S +
Sbjct: 499 GEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNA 558
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
L+D Y KC F+ LF L WN+
Sbjct: 559 LIDMYAKCGFIKEGRLLFESTLGKDVICWNS 589
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 113/264 (42%), Gaps = 54/264 (20%)
Query: 41 HFCLVS-LEKCSTMREL---KQIHAQMLRTSLFFD--------------PCADYHVRLVF 82
F L S L C+ R + +Q+H +R L + C D + LVF
Sbjct: 114 EFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAM-LVF 172
Query: 83 SQ--ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
+ NP +T +++ GY+ A + +M + G+ PDRF+ S +C+ + +
Sbjct: 173 DALPVKNPVTWT--AVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGF 230
Query: 140 VE--KQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD---------- 177
+E +Q H A + + +D+ + N LI++Y C C++ +
Sbjct: 231 LEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAG 290
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +F+++ E +P+ ++L + + ++VH ++ S
Sbjct: 291 YMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESD 350
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+K +L+D Y KC+ ++ A +F
Sbjct: 351 EYVKNSLIDMYAKCEHLTEARAVF 374
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 33/209 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYH--EMIVQGLIPDRFMFPSLFKSC 135
R +F ++ + + + S + + +A + + G P+ F+ S ++C
Sbjct: 65 ARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRAC 124
Query: 136 AD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------ 174
A + +Q+H A++ GL + ++ LIN+Y+ C+D
Sbjct: 125 AQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWT 184
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
Q A+++F +M ++ V+P+ L + ++A + L ++ H
Sbjct: 185 AVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRI 244
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + L+D YCKC +S A LF
Sbjct: 245 AVETDASVINALIDLYCKCSRLSLARKLF 273
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 31/249 (12%)
Query: 55 ELKQIHAQMLRTSL--------------FFDPCADYHVRLVFSQISN--PTIYTCNSIVR 98
EL+Q+HAQ+++T+ F P Y + +F + P + NS ++
Sbjct: 76 ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHY-AQQIFKCVEKQKPETFVWNSCLK 134
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLAS 155
+ +A + ++ + + PD F S+ ++C D+ + LH K G S
Sbjct: 135 ALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS 194
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
++I Y C + EAI +F +ME VK N VT+V VL A A L
Sbjct: 195 ----WTSMIAGYVQC---GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGM 247
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275
R+H+ + GF +V + TL+D Y KC + A +F +M W SA +G
Sbjct: 248 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM--EERTVVSW--SAMIGGL 303
Query: 276 GLVGRHSTA 284
+ GR A
Sbjct: 304 AMHGRAEEA 312
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 113/289 (39%), Gaps = 79/289 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLF--------------FDPCADYHVRL-VFSQISN--PT 89
L KC + LKQIH+ ++++ L P D L +F I + P
Sbjct: 32 LAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPN 91
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
I+ N+++R ++ + + +M+ GL P+ FPSLFKSCA + KQLH+
Sbjct: 92 IFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHA 151
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
A+K L +H +LI+MYS L D+
Sbjct: 152 HALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDD 211
Query: 179 AIKIFYRMEIENV-------------------------------KPNAVTLVNVLTARAR 207
A ++F + ++V PN T+V+VL+A
Sbjct: 212 ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGH 271
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R L K + V + GF +++L L+D Y KC + A LF M
Sbjct: 272 LRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGM 320
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 66 TSLFFDPCADYHV---RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
T+L ++ HV R +F +I + + N+++ GY EA + M +
Sbjct: 197 TALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS 256
Query: 123 PDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------- 170
P++ S+ +C + + K + S G + L N L++MYS C
Sbjct: 257 PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKL 316
Query: 171 ------------------WC-LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
+C L +EA+ +F M ENV PN VT + VL A A L
Sbjct: 317 FDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGAL 376
Query: 212 RTVKRVHKCVDE----SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K VH +D+ +G ++V L T+++ Y KC V A +F M L WN
Sbjct: 377 DLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWN 434
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 49/276 (17%)
Query: 60 HAQMLRTSLFFDPCAD---YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH---EAFLFY 113
H++ L T L CA + R +F ++NP + N++++ + H + FY
Sbjct: 42 HSRSLLTKLLNLACAAGSIIYTRQIFLSVANPDSFLFNTLIK--STSKFHKFSIYSLFFY 99
Query: 114 HEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
+ M++ + P + F S+ KSCAD+ + K +H + G D ++ L+ Y+
Sbjct: 100 NCMLLSDISPSAYTFTSIVKSCADLSSLKLGKVVHGHVLVNGFGLDVYVQAALVACYAKS 159
Query: 171 WCLDQPD----------------------------EAIKIFYRMEIENVKPNAVTLVNVL 202
L EAI++F +M E +P++ T V VL
Sbjct: 160 GDLGNARKVFDKMRERSVVSWNSIISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVL 219
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+A A+ L VHK G +V L T+L++ Y +C V++A ++F M N
Sbjct: 220 SACAQLGALSMGCWVHKYTIGHGLDLNVVLGTSLINMYTRCGTVTKAREVFDSM--KEKN 277
Query: 263 YGQWAMSATVGPQGLVGRHSTAHQI------SGPCP 292
W +A + G G A Q+ GPCP
Sbjct: 278 VVTW--TAMISGYGTNGHGRQAVQLFDEMKRRGPCP 311
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 35/154 (22%)
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYV 140
+I + + N+I+ G++ A F+ EM+ GL PD F F ++ +CA+ I +
Sbjct: 448 RIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIEL 507
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------- 177
KQ+H Q IK + D ++ +TL++MY+ C D PD
Sbjct: 508 GKQIHGQIIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGY 565
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM+ ENV PN T V VL A
Sbjct: 566 ALHGLGVEALRMFERMQKENVVPNHATFVAVLRA 599
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + +P + + N++V GY + + E+ + EM +G+ PDR F L KSC+ +
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ + Q+H+ A+K GL D + L++MY C L D+A+ FY M N
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSL---DDALCFFYGMPERN 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 28/237 (11%)
Query: 45 VSLEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC-------- 93
V L+ CS + EL Q+HA ++T L D + ++ + + C
Sbjct: 154 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 213
Query: 94 -----NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
S + G + + EM GL + + S F+SCA + +QLH
Sbjct: 214 NWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 273
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205
+ AIK +SD + ++++Y+ L +A + F+ + V+ + +V + R
Sbjct: 274 AHAIKNKFSSDRVVGTAIVDVYAKANSL---TDARRAFFGLPNHTVETSNAMMVGLFMIR 330
Query: 206 ARAR-DLRTVKRV-HKCVDESGFWS----HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ R D+ ++ V C + G++ H +++D Y KCK + A+ +F M
Sbjct: 331 SSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQGM 387
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 41 HFCLVS-LEKCSTMREL---KQIHAQMLRTSLFFDP------------CADY-HVRLVFS 83
HF + L+ C+ + + KQIH Q+++ + D C D LVF
Sbjct: 489 HFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFE 548
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
++ + N+++ GY L EA + M + ++P+ F ++ ++C+ +
Sbjct: 549 KVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 603
>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
Length = 847
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYVEK--QLHS 146
+ + S++ GY + EA + Y E+ QG+ P+ F F S+ K CA +E+ QLH+
Sbjct: 440 VVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHA 499
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDE 178
Q IK L DSF+ +TL++MY C + E
Sbjct: 500 QVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGRE 559
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLM 237
AI+ F RM ++PN + V++LTA + A + +K + + G E + ++
Sbjct: 560 AIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCII 619
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYG 264
D Y + + A+ +M N YG
Sbjct: 620 DTYGRAGRLDEAYKFISEMPIKPNAYG 646
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA--- 136
VF Q+ +++ GY A L + +M +GL+ D+ +F S+ +
Sbjct: 328 VFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLK 387
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------SCWCL------- 173
D ++ K +H K G + + N LI+MY+ W +
Sbjct: 388 DGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMI 447
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
D +EA+ I+ + + V+PN T +++ A L ++H V ++
Sbjct: 448 DGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI 507
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
+ +TL+D Y KC +S + LF ++ + WN
Sbjct: 508 RDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWN 545
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 96/251 (38%), Gaps = 45/251 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTS-------------LFFDPCADYHVRL-VFSQISNPT 89
L S + +R + +HA+++ + + CAD L +F+ +
Sbjct: 177 LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 236
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS--Q 147
+ ++V G + +H +A + M G+ P RF S ++ A + + S
Sbjct: 237 AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTA 296
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+ G ++ F+ + L +MYS C L + + A
Sbjct: 297 SASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAA 356
Query: 180 IKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+ F M+ E V + +VL+A +D K +H CV ++GF V ++ L+D
Sbjct: 357 VLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALID 416
Query: 239 AYCKCKFVSRA 249
Y K V A
Sbjct: 417 MYAKSMDVESA 427
>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 760
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 33/208 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F+ I P++ N+++ GY+N + EA + +M Q L PDR + SCA +
Sbjct: 356 RRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARL 415
Query: 139 -YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD------- 177
++E KQ+H AI+ + DS + + LI +YS C C+++ D
Sbjct: 416 RFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSM 475
Query: 178 -----------EAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+ +F RM +V PN T VL + +R L ++ H V +SG
Sbjct: 476 ISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSG 535
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ S ++T + D YCKC + A F
Sbjct: 536 YVSDSFVETAVTDMYCKCGEIESARQFF 563
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 49/234 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + + + N+++ K +A Y M+ G +P RF S+ +C+ D
Sbjct: 80 VFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQD 139
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD--------- 177
+ + H A+K GL + F+ N L++MY+ C L +P+
Sbjct: 140 GVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVIS 199
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTA---RARARDLRTV------KRVHK 219
EA+ +F M + V+ + V L N+L+ R L + K++H
Sbjct: 200 GLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHS 259
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
GF + L +L++ Y K K ++ A +F +M + WN +GQ
Sbjct: 260 LALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQ 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK- 133
DY VR VF +S P + +++ G +N EA + M +G+ D ++
Sbjct: 177 DYGVR-VFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSI 235
Query: 134 --------SCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSS------------- 169
S ++IY + KQ+HS A++ G + L+N+L+ +Y+
Sbjct: 236 SVPREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTE 295
Query: 170 -------CWCLD--------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
W + + D++I+ RM +PN VT +++L A R+ D+ T
Sbjct: 296 MPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETG 355
Query: 215 KRV 217
+R+
Sbjct: 356 RRI 358
>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
Length = 1026
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 36/219 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
RLVF + + NS++ Y + EAF + M G+ P+ S+ SC+D+
Sbjct: 295 RLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDL 354
Query: 139 YVE----KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ +H IK GLA + + L++MYS LD
Sbjct: 355 LFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSM 414
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ A+ F +M+I V P+A T++NV++ +DL K +H + F
Sbjct: 415 ISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRF 474
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S+ + L+ Y C +S ++ LF V+ML WN
Sbjct: 475 ESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWN 513
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 31/191 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIK 150
NS++ GY N + A + +M + G+ PD ++ C D++V K +H+ A++
Sbjct: 412 NSMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVR 471
Query: 151 FGLASDSFLHNTLINMYSSC--------------------WC--------LDQPDEAIKI 182
S + N L+ MY+ C W + + ++ +
Sbjct: 472 NRFESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTL 531
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M E V + VTL+ ++++ + + D + VH +SG S V L L+ Y
Sbjct: 532 FCQMFHEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYAN 591
Query: 243 CKFVSRAWDLF 253
C V LF
Sbjct: 592 CGIVEAGQQLF 602
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 33/184 (17%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQL 144
P +Y+ N +VR +++ H E Y + G D F FP + ++C + + +Q+
Sbjct: 104 PAVYSLNLVVRCFSDHGFHRELLDLYRGLC--GFGSDNFTFPPVIRACTAASCLQLGRQV 161
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------------------------- 176
H + ++ G S+ + L++MY+ +D
Sbjct: 162 HCRVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCF 221
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA++ M+ + PNA TLV ++ A D +H + G L + L
Sbjct: 222 REAVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSAL 281
Query: 237 MDAY 240
+ Y
Sbjct: 282 ISMY 285
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 81/201 (40%), Gaps = 28/201 (13%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+ + T N+++ GY N+ + + +M+ P+ +L C
Sbjct: 601 LFNSFCSRNTITYNALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVCQSQLQ 660
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYS----------------------------SCWC 172
K +HS A++ ++ L + + MYS +C
Sbjct: 661 GKCIHSYAVRNFTRLETPLFTSAMGMYSRFNNIEYCRTIFSLVSARNLIVWNAFLSACVQ 720
Query: 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
Q D + F M NV+P+ VT++ +++A ++ + + + + GF ++ +
Sbjct: 721 CKQADMVVDYFKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAVILQKGFSMNILV 780
Query: 233 KTTLMDAYCKCKFVSRAWDLF 253
L+D + +C +S A +LF
Sbjct: 781 LNALIDTHSRCGSISFARELF 801
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQISNPTIYTC 93
L+ C T +++ QI AQ++ ++ CA + R +F QI +P I
Sbjct: 45 LQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALW 104
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
NS+ RGY + E + +M + P+ F FP + KSC I +Q+H IK
Sbjct: 105 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 164
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G + F+ TLI+MYS+ + +A KIF M + N V +++ + D
Sbjct: 165 CGFRGNPFVGTTLIDMYSAGGTV---GDAYKIFCEM----FERNVVAWTSMINGYILSAD 217
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L + +R+ E V L ++ Y + + A LF +M
Sbjct: 218 LVSARRLFDLAPE----RDVVLWNIMVSGYIEGGDMVEARKLFHEM 259
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 78/199 (39%), Gaps = 47/199 (23%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGY-TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
R +F ++ N + N++++GY TN N+ LF EM P+R +F
Sbjct: 251 EARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLF-EEM------PERNIF------- 296
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPN 194
+ + HN L E + F RM E +V PN
Sbjct: 297 --------------SWNALIGGYAHNGLFF------------EVLGSFKRMLSESDVPPN 330
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
TLV VL+A AR L K VH + SG +V + LMD Y KC + A +F
Sbjct: 331 DATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 390
Query: 255 KM----LFPWNNY-GQWAM 268
M L WN G AM
Sbjct: 391 GMDTKDLISWNTLIGGLAM 409
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 37/242 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRF 126
+ C H + VF ++ + + N+++ +A +H M + G + P+
Sbjct: 170 LYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDA 229
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
F S+ +C+ D+ K H + I+ G S F+ N+L+NMY C +D+ A +F
Sbjct: 230 TFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDR---ARLVF 286
Query: 184 YRMEIENV----------------------------KPNAVTLVNVLTARARARDLRTVK 215
+M NV +PNAVT + V+ + R DL +
Sbjct: 287 EKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAE 346
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGP 274
++H + SGF S L+ L+ Y KC V AW +F + NN W AM + +
Sbjct: 347 QIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQ 406
Query: 275 QG 276
G
Sbjct: 407 HG 408
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 108/268 (40%), Gaps = 57/268 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
++ CS + +L K H +++RT + C RLVF ++S+ +
Sbjct: 235 VDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNV 294
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ ++ Y + AF Y M + P+ F ++ SC D+ +Q+H+
Sbjct: 295 VSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PNAVTFMAVMDSCLRPEDLPRAEQIHAH 351
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD------------------------------QPD 177
+ G SD+ L L+ MY C +D +
Sbjct: 352 MVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESK 411
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A++ F++ME+E V+PN+VT + L A + DL +++H + L ++
Sbjct: 412 QALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENI-HEANLSNAVI 470
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWN 261
+ Y KC + A D F KM + WN
Sbjct: 471 NMYGKCGSLDEAMDEFAKMPERDVVSWN 498
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 33/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF + NP +++ +++ Y + E + +M + G PD F+F ++ +C+
Sbjct: 83 VFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGA 142
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ K +H A+ G+ + + N ++N+Y C + +
Sbjct: 143 LNEGKAIHDCAVLAGMET-QVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAA 201
Query: 177 -------DEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+A+++F+ M+++ V+PN T V+V+ A + DL K H+ + +GF S
Sbjct: 202 NAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDS 261
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ + +L++ Y KC V RA +F KM
Sbjct: 262 YLFVGNSLVNMYGKCGSVDRARLVFEKM 289
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 38/178 (21%)
Query: 119 QGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
+ L P R+ SL + C + K +H + G + ++ N LI MY+ C CL+
Sbjct: 22 ESLQPARY--ASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLED 79
Query: 176 P----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
E + +F +M+++ KP+A VLTA +
Sbjct: 80 ALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSS 139
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
A L K +H C +G + V + +++ Y KC V A +F ++ L WN
Sbjct: 140 AGALNEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWN 196
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 75 DYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK 133
D H R +F +IS P++ T N+++ GY + H + + M Q + PDR +
Sbjct: 73 DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 132
Query: 134 SCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------- 176
SC+ + + +Q+HS +++F L +D F+ + L++MYS C +
Sbjct: 133 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVC 192
Query: 177 --------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EA F +M + P + +++ + +R + +++H V
Sbjct: 193 WNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVM 252
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
+ G+ +V + + L+D Y KC + A F M+ WN
Sbjct: 253 KDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWN 295
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 47/207 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
V L CS + L +Q+H+ +R L + C + R +F++++
Sbjct: 129 VILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER 188
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLH 145
+ NSI+ G T +L+ EAF F+ +M G++P + S+ SC+ + +Q+H
Sbjct: 189 DVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIH 248
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------D 177
+Q +K G + ++ + LI+MY+ C +D D
Sbjct: 249 AQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGD 308
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++F M KP+AVT + VLT
Sbjct: 309 KAVELFEYMLTTEQKPDAVTFIAVLTG 335
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 118/285 (41%), Gaps = 79/285 (27%)
Query: 52 TMRELKQIHAQMLRTSL------------FF--DPCADY-HVRLVFSQISNPTIYTCNSI 96
TM++ KQIHA + +L FF P D+ + +F+ + NP I+ NSI
Sbjct: 36 TMKQTKQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFTHMPNPNIFDYNSI 95
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASD 156
+ YT + ++ + +M+ + P+ F +L KSC + +Q+ + +K G +SD
Sbjct: 96 ITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSLEQVFTLTMKSGNSSD 155
Query: 157 SFLHNTLINMYSS--------------------CWC---------------------LDQ 175
+ +++IN++S CW + Q
Sbjct: 156 VYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQ 215
Query: 176 PDEA------------------IKIFYRMEIEN-----VKPNAVTLVNVLTARARARDLR 212
+EA +++F ++ ++ VK N LV+VL A
Sbjct: 216 RNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGAFE 275
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
K +H V+E+G +EL T L+D Y KC +V A +F KML
Sbjct: 276 EGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVFDKML 320
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 31/229 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA----------------DYHVRLVFSQISNPTI 90
L C +++ +I +QM+ T D A DY ++ +F +I N
Sbjct: 48 LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQ-IFDRIENSNG 106
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQ 147
+ N+++R Y N +A L Y M+ + PD + +P + ++CA +E K++H
Sbjct: 107 FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDH 166
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
+K G SD ++ NTLINMY+ C + +A K+F E+ ++V+ ++L +
Sbjct: 167 VLKVGFDSDVYVQNTLINMYAVCGNM---RDARKLFD----ESPVLDSVSWNSILAGYVK 219
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
D+ K + + + ++ +++ K V AW LF +M
Sbjct: 220 KGDVEEAKLIFDQMPQ----RNIVASNSMIVLLGKMGQVMEAWKLFNEM 264
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 71/266 (26%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+++ + + ++++ GY ++ EA + + EM G+ D + S+ +CA + +
Sbjct: 260 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 319
Query: 141 ---EKQLHSQAIKFGLAS-----DSFLH--------------------------NTLINM 166
K +H I+ G+ S ++ +H N++I+
Sbjct: 320 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISG 379
Query: 167 YSSCWCLDQP----------------------------DEAIKIFYRMEIENVKPNAVTL 198
C +++ E + +F+ M++ ++P+ L
Sbjct: 380 CMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETIL 439
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
V+V++A L K VH + ++G +V L TTL+D Y KC V A ++F M
Sbjct: 440 VSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEE 499
Query: 257 --LFPWNNYGQWAMSATVGPQGLVGR 280
+ WN A+ + GLV R
Sbjct: 500 KGVSSWN-----ALIIGLAVNGLVER 520
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R +F + I + ++++ GY + E +HEM + + PD + S+ +C
Sbjct: 390 RALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHL 449
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP-N 194
A + K +H+ K GL + L TL++MY C C++ A+++F ME + V N
Sbjct: 450 AALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVEN---ALEVFNGMEEKGVSSWN 506
Query: 195 AVTL---VNVLTARA 206
A+ + VN L R+
Sbjct: 507 ALIIGLAVNGLVERS 521
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 42/235 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL----------------FFDPCADYHVRLVFSQISNPTI 90
L C+ ++KQ+HA ++R L P Y + LVF Q++ P
Sbjct: 49 LHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPL-LVFGQVNYPNP 107
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ +++RGY + L E+ FY M G+ P F F +LFK+C ++ + KQ+H+Q
Sbjct: 108 FLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQ 167
Query: 148 AIKF-GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
I G ASD ++ N++I++Y C L A K+F M +V V+ ++ A A
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGC---ARKVFDEMSERDV----VSWTELIVAYA 220
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELK-----TTLMDAYCKCKFVSRAWDLFVKM 256
+ D+ + SG + + K T ++ Y + A + F KM
Sbjct: 221 KYGDMESA---------SGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKM 266
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + + + ++V GY EA ++ +M G+ D + +CA +
Sbjct: 231 LFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGA 290
Query: 141 EKQLH-----SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
K + ++ FG + + + + LI+MYS C PDEA K+F M+ NV
Sbjct: 291 VKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC---GSPDEAYKVFEVMKERNV 343
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VF + +++ +S++ GY H A +H+M+ + P++ F + +C+
Sbjct: 334 VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGL 393
Query: 138 IYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ +QL ++ K FG+A + ++++ CL +EA+ + M +E PN
Sbjct: 394 VEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCL---EEALDLVKTMPME---PNGG 447
Query: 197 TLVNVLTA 204
+L A
Sbjct: 448 VWGALLGA 455
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 38/227 (16%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP--- 129
C D +R +F ++ + N I+ Y + EM Q L DR + P
Sbjct: 484 CLD-DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM--QKLGFDRQVLPYAT 540
Query: 130 --SLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------- 174
S+ S D+++ KQ+H+Q + GLAS+ L N LI+MYS C LD
Sbjct: 541 MLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKS 600
Query: 175 ---------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
Q +EA+++F M ++P+ T +++ A + + +++H
Sbjct: 601 AISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHS 660
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ SG+ S V + L+D Y KC + A F +M P N W
Sbjct: 661 YLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM--PERNSISW 705
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIHAQ++ L + C + FS S + + +++ GY
Sbjct: 555 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 614
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKFGLASDSFLH 160
H EA + +M GL PDR F S+ K S A I + +QLHS I+ G S F
Sbjct: 615 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAV 196
+ L++MY+ C CL DEA++ F M E ++ NAV
Sbjct: 675 SVLVDMYAKCGCL---DEALRTFDEMPERNSISWNAV 708
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A+ +F M E V P+ VT+ VL TV +H + G +HV + TL+
Sbjct: 337 DALSLFRAMLGEGVIPDRVTVTTVLNLPGC-----TVPSLHPFAIKFGLDTHVFVCNTLL 391
Query: 238 DAYCKCKFVSRAWDLFVKM 256
DAYCK ++ A +F++M
Sbjct: 392 DAYCKHGLLAAARRVFLEM 410
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 23/246 (9%)
Query: 30 NNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY- 76
+N N+ S +Q + L + + KQ+H ++ L + C D
Sbjct: 16 SNPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLG 75
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ +F ++S P ++ +I+ Y+ L E Y EM ++G++PD+++FP +F++C
Sbjct: 76 SAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACG 135
Query: 137 DIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
+ V Q+H + G D + N+LI+MYS ++F M V+
Sbjct: 136 QLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKS---GDVGSGRRVFDEM----VER 188
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ ++ ++++ L + + GF + T+MDAYC+ AW++F
Sbjct: 189 DVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIF 248
Query: 254 VKMLFP 259
++ P
Sbjct: 249 EQIKEP 254
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 49/236 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSC---A 136
+F QI P I + ++V GY+ H ++ + EM+ + + PD S+ SC
Sbjct: 247 IFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLG 306
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNT---LINMYSSC--------------------WC- 172
+ +++H I+ + S SF + L+ MY C W
Sbjct: 307 ALVCGQEIHGYGIR-SVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNA 365
Query: 173 -------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
L+ A++ F +M+ + N +T+ VL A DL++ K+VH + ++
Sbjct: 366 MILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGKQVHAYITKNS 421
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
F S + + L+ Y KC + A+ +F M L WN M G GL
Sbjct: 422 FSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNT-----MIGGFGMHGL 472
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 44/243 (18%)
Query: 58 QIHAQMLRTSLFFD-PCAD------------YHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
Q+H ++ + L D P A+ + R +F + + T N ++ GY
Sbjct: 269 QLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNG 328
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPS---LFKSCADIYVEKQLHSQAIKFGLASDSFLHN 161
EA +HEMI G+ PD F S L A + K++H I+ G++ D FL +
Sbjct: 329 FMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKS 388
Query: 162 TLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKP 193
LI++Y C ++ + A++IF + E ++
Sbjct: 389 ALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRA 448
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
N+VTL +VL A A L K +H + ++G + + +MD Y KC + A F
Sbjct: 449 NSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTF 508
Query: 254 VKM 256
+ +
Sbjct: 509 IGI 511
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 44/254 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTIYTC 93
L + +T+R+ K+IH ++R + D C D + +F Q + I C
Sbjct: 359 LSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVC 418
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIK 150
+++ GY +++ A + ++ + + + S+ +CA + + K+LH +K
Sbjct: 419 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK 478
Query: 151 FGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKI 182
G ++ + +++MY+ C LD +P+EAI +
Sbjct: 479 NGHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDL 538
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M + K + V++ L+A A L K +H + F S + ++ L+D Y K
Sbjct: 539 FRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 598
Query: 243 CKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 599 CGNLDLACRVFDMM 612
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 105/271 (38%), Gaps = 52/271 (19%)
Query: 44 LVS-LEKC---STMRELKQIHAQMLRTSLFFDP------------CADY-HVRLVFSQIS 86
LVS L+ C S + +Q HAQML + ++ C + + +F Q+
Sbjct: 49 LVSILQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
N ++RG+T A LFY +M+ G +PD++ FP + K+C + + +
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+H + G D F+ ++LI YS C+
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
D A +F M PN+VT VL+ A + ++H V SG + T
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L+ Y KC + A LF M L WN
Sbjct: 289 LLAMYAKCGHLFDARRLFDMMPKTDLVTWNG 319
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
F IS NS++ + EA + +M + G D + +CA++
Sbjct: 507 TFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ K++H+ ++ SD F + LI+MYS C LD
Sbjct: 567 LHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAA 626
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWS 228
+ +++ +F+ M + ++P+ VT + +++A A + +C+ +E G +
Sbjct: 627 YGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMA 686
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAM 268
+E ++D + + ++ A+ + M F + G W +
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSMPFS-PDAGVWGL 725
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 37/206 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIP--DRFMFPSLFKSCADI---YVEKQLHSQA 148
N ++RG+T HH A LFY +M P D P + KSCA + + + +H A
Sbjct: 108 NWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTA 167
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
GLA+D ++ + L+ MY+ L D A+
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++F M +PN TL L+ A DL + ++H + G V + TL+ Y
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMY 287
Query: 241 CKCKFVSRAWDLFVKM----LFPWNN 262
KC+ + AW LF M L WN
Sbjct: 288 AKCQCLDDAWRLFELMPQDDLVTWNG 313
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 32/215 (14%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C D RL F + + T N ++ G L EAF +++M G PD SL
Sbjct: 292 CLDDAWRL-FELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLL 350
Query: 133 KSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSC------------------- 170
+ D+ KQ +H ++ + D FL + L+++Y C
Sbjct: 351 PALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVV 410
Query: 171 --------WCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ L+ +EA+++F + + +KPNAVT+ +VL A L +++H V
Sbjct: 411 IGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYV 470
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +++ LMD Y KC + + +F+KM
Sbjct: 471 LRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKM 505
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 115/282 (40%), Gaps = 51/282 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHVRL---VFSQISNP 88
L +L + +++ K++H ++R + D C D VR+ ++
Sbjct: 350 LPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRD--VRMAQNLYDAARAI 407
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+ ++++ GY + EA + ++ Q + P+ S+ CA + + +Q+H
Sbjct: 408 DVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIH 467
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
++ ++ + L++MY+ C LD +P
Sbjct: 468 GYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQ 527
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+ +F +M +E +K N +T+ L+A A + K +H + + + ++ L+
Sbjct: 528 EALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALI 587
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
D Y KC + A +F M P N W ++ + G GLV
Sbjct: 588 DMYAKCGNLELALRVFEFM--PDKNEVSWNSIISAYGAHGLV 627
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 49/269 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHVR-LVFSQISNPTI 90
L C++M L +QIH +LR + + C + +F ++S
Sbjct: 451 LPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDE 510
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
T NS++ ++ EA + +M ++G+ + + +CA IY K++H
Sbjct: 511 VTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGV 570
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD--------QPD--------------------EA 179
IK + +D F + LI+MY+ C L+ PD E+
Sbjct: 571 TIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKES 630
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMD 238
+ + + M+ E KP+ VT + +++A A A + ++ +C+ + + +E ++D
Sbjct: 631 VSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVD 690
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
Y + + +A M F + G W
Sbjct: 691 LYSRSGKLDKAIQFIADMPFK-PDAGIWG 718
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
YH RLVF + + ++ NS++ GY L++EAF +++M ++PD F +L K
Sbjct: 75 YHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVS 134
Query: 136 AD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
++ ++ K +H ++I+ G SD+ + N++++MY C +E+ K+F M I N
Sbjct: 135 SELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKC---GNFEESRKVFDEMTIRN 189
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 119/274 (43%), Gaps = 53/274 (19%)
Query: 27 DNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQM-LRTSLFFDP-CADYHV------ 78
D + N+I S Y C KC E +++ +M +R S ++ A Y V
Sbjct: 158 DTVVANSIMSMY----C-----KCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVV 208
Query: 79 -RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA 136
R VF ++ +++ +++ GY EA + +M ++ G+ P+R S+ +C+
Sbjct: 209 GRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACS 268
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ +Q+H A++ L ++ L N LI+MYS C LD
Sbjct: 269 SFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWS 328
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DE 223
+ EAI ++ +M ++P+ +T V +L+A +R+ + ++ V ++
Sbjct: 329 SMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVIND 388
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G +E+ ++D + + A D F+K +
Sbjct: 389 YGIEPTLEIFACIVDMLGRAGQLDPALD-FIKAM 421
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
FL N+LIN Y+ + EA ++F +M +V P+ TL + + L + K +
Sbjct: 90 FLWNSLINGYAKNRLYN---EAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSI 146
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
H GF S + ++M YCKC + +F +M N G W
Sbjct: 147 HGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTI--RNSGSW 193
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCA-----DYHV--------RLVFSQISNPTI 90
L CS + L KQIHA +LR D D++ R +F Q+ I
Sbjct: 259 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 318
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ +++ GY + EA + EM G PD F S+ SC + +Q+H+
Sbjct: 319 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAY 378
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
IK L SD F+ N LI+MY+ L ++ EA
Sbjct: 379 TIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 438
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F+ M + KPN T ++TA + LR ++ H + + G + L+D
Sbjct: 439 LELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDM 498
Query: 240 YCKCKFVSRAWDLF 253
Y KC + A +F
Sbjct: 499 YAKCGSIEEARKMF 512
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 47/209 (22%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQIS 86
C L C + L +Q+HA ++ +L D + VF ++
Sbjct: 356 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA 415
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQ 143
+ + N+++ GY+++ EA +HEM V+ P+ F F +L + +++ +Q
Sbjct: 416 EQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQ 475
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
H+Q +K GL F+ N L++MY+ C +++
Sbjct: 476 FHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGE 535
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+EA+ +F M E ++PN VT V VL+A
Sbjct: 536 AEEALGMFREMMKEGIQPNYVTFVAVLSA 564
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
RLVF Q+S T T +I+ GYT + + +M ++PDR++ S+ +C+
Sbjct: 204 EARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACS 263
Query: 137 DI-YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQPD--------- 177
+ ++E KQ+H+ ++ G D + N LI+ Y+ C DQ
Sbjct: 264 MLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTT 323
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+K+F M KP+ +VLT+ L ++VH ++
Sbjct: 324 MISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKAN 383
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
S +K L+D Y K + A +F
Sbjct: 384 LESDEFVKNGLIDMYAKSNLLIDAKKVF 411
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSC 135
+ R+VF ++ + + T +S+V Y+ + EA + + ++ + G P+ F+ S+ ++C
Sbjct: 102 NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 161
Query: 136 ADI-YVEK--QLHSQAIKFGLASDSFLHNTLINMYS-------SCWCLDQPDE------- 178
+ VEK QLH ++ G D ++ +LI+ YS + DQ E
Sbjct: 162 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 221
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
++++F +M NV P+ + +VL+A + L K++H V
Sbjct: 222 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 281
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G V + L+D Y KC V LF +M+
Sbjct: 282 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 314
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 31/157 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+ ++ T + NSI+ G++++ A ++ +M+ G+IPD F + ++ CA+
Sbjct: 498 IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMAT 557
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + KQ+H+Q +K L SD ++ +TL++MYS C +
Sbjct: 558 IELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICA 617
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
++AIK+F M++ NVKPN ++VL A A
Sbjct: 618 YAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACA 654
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 49/269 (18%)
Query: 46 SLEKCSTMR---ELKQIHAQMLRTSLFFDPCA-----DYHVR--------LVFSQISNPT 89
+L CS ++ E Q+H ++ L F+ C D + + +F +
Sbjct: 346 ALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRD 405
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ N+I+ + + + M+ + PD F + S+ K+CA + ++H
Sbjct: 406 AVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHG 465
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
+ +K G+ D F+ + L++MY C L Q +
Sbjct: 466 RIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSEN 525
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A + F +M V P+ T VL A + K++H + + S V + +TL+D
Sbjct: 526 AQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVD 585
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
Y KC + + +F K P +Y W+
Sbjct: 586 MYSKCGNMQDSRLMFEKT--PKRDYVTWS 612
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F ++ + ++++ GY + E + +M+ G+ + + S+F+SCA +
Sbjct: 195 IFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSA 254
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSC------WCL------------------ 173
K QLH A+K A DS + ++MY+ C W +
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVG 314
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
DQ +A++IF ++ + + ++L LTA + + ++H + G +
Sbjct: 315 YARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFN 374
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + T++D Y KC + A +F M
Sbjct: 375 ICVANTILDMYGKCGALVEACTIFDDM 401
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 31/200 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF+ + NP + N+I+ GY ++ +A + + L D +C+ I
Sbjct: 296 VFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKG 355
Query: 139 YVEK-QLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
++E QLH A+K GL + + NT+++MY C L
Sbjct: 356 HLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAA 415
Query: 174 -DQPDEAIK---IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+Q +E +K +F M ++P+ T +V+ A A + L +H + +SG
Sbjct: 416 HEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLD 475
Query: 230 VELKTTLMDAYCKCKFVSRA 249
+ + L+D Y KC + A
Sbjct: 476 WFVGSALVDMYGKCGMLMEA 495
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 33/225 (14%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
L+KCS ++ L KQ HAQM+ TS PTIY N +V+ Y
Sbjct: 13 LQKCSNLKALNPGKQAHAQMIVTSFV------------------PTIYVANCLVQFYCKS 54
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
+ + AF + M + +I M + ++ + L + + S N+L
Sbjct: 55 SNMNYAFKVFDRMPHRDVISWNTMIFG-YAEIGNMGFAQSLFDTMPERDVVS----WNSL 109
Query: 164 INMYSSCWCLDQPD-EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+ SC+ + + ++I+IF RM + + T VL A + D +VH
Sbjct: 110 L----SCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAI 165
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+ GF + V + L+D Y KCK + A+ +F +M P N W+
Sbjct: 166 QMGFENDVVTGSALVDMYSKCKKLDGAFRIFREM--PERNLVCWS 208
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + + NS++ Y + ++ ++ + M + D F + K+C+ D
Sbjct: 94 LFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIED 153
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ Q+H AI+ G +D + L++MYS C LD
Sbjct: 154 YGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAG 213
Query: 175 --QPD---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
Q D E +K+F M + + T +V + A + ++H +S F
Sbjct: 214 YVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYD 273
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ T +D Y KC +S AW +F
Sbjct: 274 SIIGTATLDMYAKCDRMSDAWKVF 297
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L+ C+ M + KQIHAQ+L+ +L + C + RL+F +
Sbjct: 549 LDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDY 608
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLHSQAI 149
T ++++ Y +A + EM + + P+ +F S+ ++CA + YV+K LH I
Sbjct: 609 VTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQI 668
Query: 150 K---FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+GL ++ ++++ DQ +EA+K+ M E
Sbjct: 669 MQSHYGLDPHMEHYSCMVDLLGRS---DQVNEALKLIESMHFE 708
>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
Length = 822
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 11/203 (5%)
Query: 68 LFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
+ + C D R VF ++ + T NS++ GY EA M +G P
Sbjct: 157 VMYAKCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVV 216
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+ +L S A D+ V +L Q + G+A D +L++ + +D+ DEA++ F
Sbjct: 217 TWNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVH---MDRSDEALRCF 273
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
RM + V+PN +++ ++A A + L K +H + G ++V +L+D Y KC
Sbjct: 274 IRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKC 333
Query: 244 KFVSRAWDLFV----KMLFPWNN 262
+ AW +F K +F WN+
Sbjct: 334 GEIVAAWRIFSGIPDKDIFSWNS 356
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 34/213 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF + + ++++ Y + ++ + M+ +G++PDRF+ + ++CA
Sbjct: 64 AREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAY 123
Query: 137 --DIYVEKQLHSQAIK---FGLASDSFLHNTLINMYSSC----W---------CLD---- 174
D+ + + LHS AI+ G D + N+++ MY+ C W C D
Sbjct: 124 AEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVCRDLGTW 183
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+ +EA + M E +P VT ++++ AR DL + ++E
Sbjct: 184 NSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDVAMELLGQMEE 243
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
SG V T+L+ + A F++M
Sbjct: 244 SGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRM 276
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 28/197 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+FS I + I++ NS++ GY +A+ + +M G+ + + ++ Y+
Sbjct: 342 IFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISG----YI 397
Query: 141 EKQLHSQAIKF-------GLASDSFLHNTLI-----NMYSSCWCLDQPDEAIKIFYRMEI 188
+A + G+ D+ N LI N Y D AI+IF +M+
Sbjct: 398 RNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYY--------DRAIRIFRQMQA 449
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+P+ +T+++++ A V+ +H C+ ++ L++AY K ++
Sbjct: 450 LLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLAS 509
Query: 249 AWDLF----VKMLFPWN 261
A +F + + WN
Sbjct: 510 ACAVFDMHSSRNIISWN 526
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL----------FFDPCADYHVRL-VFSQISNPTIYT 92
L+ C ++ L +Q+HA++L++ L ++ C + VF +++ TI+T
Sbjct: 53 LDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFT 112
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
N+++ + + + EA Y EM V G+ D FPS+ K+C + + ++H A+
Sbjct: 113 WNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAV 172
Query: 150 KFGLASDSFLHNTLINMYSSCWCL------------DQPD------------------EA 179
K G F+ N LI MY C L ++ D EA
Sbjct: 173 KCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEA 232
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F RM+ V N T V L ++ +H +S ++ V + L+
Sbjct: 233 LSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAM 292
Query: 240 YCKCKFVSRAWDLFVKML----FPWN 261
Y KC + A +F ML WN
Sbjct: 293 YAKCGRMEDAERVFASMLCRDYVSWN 318
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 45/241 (18%)
Query: 57 KQIHAQMLRTSL-------------FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
K++HA +R L + C H+ F + + + +I+ GY
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQN 428
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLH 160
H EA + ++ V+G+ D M S+ ++C+ + +++H K LA D L
Sbjct: 429 ECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQ 487
Query: 161 NTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENVK 192
N ++N+Y D P EA+++FY ++ N++
Sbjct: 488 NAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+++ +++ L+A A L+ K +H + GF+ + ++L+D Y C V + +
Sbjct: 548 PDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKM 607
Query: 253 F 253
F
Sbjct: 608 F 608
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 69 FFDPCADYH-VRLVFSQI--SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
+ C D R++F I + NSI+ + + EA + M G+ +
Sbjct: 189 MYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNT 248
Query: 126 FMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----- 177
+ F + + D + + +H A+K +D ++ N LI MY+ C ++ +
Sbjct: 249 YTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFAS 308
Query: 178 -----------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
+A+ F M+ KP+ V+++N++ A R+ +L
Sbjct: 309 MLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNG 368
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKC 243
K VH +G S++++ TL+D Y KC
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLIDMYAKC 397
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP 88
+ +N+ Y A+ + KC M + +++ A ML C DY
Sbjct: 275 LKSNHFADVYVANALIAMYAKCGRMEDAERVFASML--------CRDY------------ 314
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+ N+++ G L+ +A ++ +M PD+ +L + ++ K++H
Sbjct: 315 --VSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVH 372
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------ 177
+ AI+ GL S+ + NTLI+MY+ C C+ + D
Sbjct: 373 AYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHL 432
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
EAI +F +++++ + + + + +VL A + + ++ +H V
Sbjct: 433 EAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV 476
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 86/296 (29%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTI 90
+ SL+ C + +LK+IHA +++ SL D C + + L+F Q+ +P I
Sbjct: 14 ITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNI 73
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI---VQGLIPDRFMFPSLFKSCADIYVEK---QL 144
+T N+I+R Y + H A + +M+ + PD+F FP + KSC I + Q+
Sbjct: 74 FTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQV 133
Query: 145 HSQAIKFGLASDSFLHNTLINMYS-------SC-------------WC--------LDQP 176
H KFG N LI+MY+ +C W L Q
Sbjct: 134 HGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQM 193
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARA----------RDLRTV------------ 214
+ A ++F M + + V+ ++T R R+++ V
Sbjct: 194 NSARELFDDMPVRTI----VSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAV 249
Query: 215 -------------KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
K +H D++GF + L++ Y KC + AW+LF +++
Sbjct: 250 LPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLV 305
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 35/221 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
+ R VF +I + + + S++ G L E + ++EM + ++P + S+ +C
Sbjct: 180 NARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACT 239
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL 173
++ + +H +K GL S+ F+ +++MY C W
Sbjct: 240 MLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTT 299
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
P +A+ +F + + PN+VT+ VL+A A+ R+L + +H + G
Sbjct: 300 MIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLG 359
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
+ + L+D Y KCK +S A +F ++L WN+
Sbjct: 360 AVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNS 400
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 48/288 (16%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVF 82
S+Y L++ ++ + + IH +++ L + C + R VF
Sbjct: 227 SEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVF 286
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIY 139
++S + +++ GYT +A L + + ++P+ ++ + A ++
Sbjct: 287 DELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLS 346
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------------- 173
+ + +H ++K G + + N L++MY+ C L
Sbjct: 347 LGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYA 406
Query: 174 --DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
D +A+ +F M ++ P+A+++VN L+A DL K H + F S++
Sbjct: 407 ENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIY 466
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
+ T L++ Y KC + A +F +M N+ A +G G+ G
Sbjct: 467 VNTALLNLYNKCADLPSAQRVFSEM----NDRNTVTWGAMIGGYGMQG 510
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F ++ N + T NS++ GY ++ +A + + M VQG +PD + +C D
Sbjct: 386 IFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGD 445
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ + K H+ A+K S+ +++ L+N+Y+ C L
Sbjct: 446 LLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGG 505
Query: 175 ---QPDEA--IKIFYRMEIENVKPNAVTLVNVLT 203
Q D A I +F M +N++PN ++L+
Sbjct: 506 YGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILS 539
>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Brachypodium distachyon]
Length = 647
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F ++ + T N++V G TN L ++ F+ M +G+ PD F S+F+ CA
Sbjct: 127 ARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAG 186
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
D+ +Q+H+ ++ G+ SD + N+L +MY C CL + +
Sbjct: 187 LLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTT 246
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
A++ F M V P+ VT V+ ++ + L ++VH V ++G
Sbjct: 247 IAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGV 306
Query: 227 WSHVELKTTLMDAYCKC 243
V + T+L+ Y +C
Sbjct: 307 DKVVPVITSLVHMYSRC 323
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 57 KQIHAQMLRTSLFFDPC-----ADYHVR--------LVFSQISNPTIYTCNSIVRGYTNK 103
+Q+HA ++R+ + D C A ++R V + + TI + N+ + G T
Sbjct: 194 RQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQN 253
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
A ++ M + PD F S C+D+ +Q+H+Q IK G+ +
Sbjct: 254 GDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVI 313
Query: 161 NTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVK 192
+L++MYS C CL Q +A+++F +M +
Sbjct: 314 TSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE 373
Query: 193 PNAVTLVNVLTA 204
PN VT + +L A
Sbjct: 374 PNEVTFLALLYA 385
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 36/223 (16%)
Query: 72 PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
PC R F +I +P + +S+V Y+N L A +H M +G+ + F P +
Sbjct: 53 PCC---ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVV 109
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
K D + Q+H+ A+ G SD F+ N L+ MY +
Sbjct: 110 LKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS 169
Query: 174 -----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
DQ +AI++F M ++P V+ A +R++ ++VH V
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
G+ V L+D Y K V A +F KM + WN
Sbjct: 230 RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWN 272
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 50/263 (19%)
Query: 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTI 90
SLE ST R Q+HA ++ FD C R VF + S+ I
Sbjct: 415 ASLEAASTTR---QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANR-VFEECSSGDI 470
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
C S++ + + A + EM+ +GL PD F+ SL +CA + KQ+H+
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK SD+F N L+ Y+ C ++ + A
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMD 238
+++F RM E + PN +T+ +VL A A + KR + E G E + ++D
Sbjct: 591 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMID 650
Query: 239 AYCKCKFVSRAWDLFVKMLFPWN 261
+ + A +L M F N
Sbjct: 651 LLGRAGKLDDAMELVNSMPFQAN 673
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 43/258 (16%)
Query: 30 NNNNINSQYQAHFCLVSL---EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS 86
+ NI + Q H +V + + T L ++ +M R + ++F ++
Sbjct: 214 GSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI---------ASVIFEKMP 264
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQ 143
+ + + N+++ G H A +M GL+P+ F S+ K+C+ + +Q
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQ 324
Query: 144 LHSQAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQ 175
+H IK SD ++ L++MY S C +
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+ +FY + E + N TL VL + A T ++VH + GF +
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNG 444
Query: 236 LMDAYCKCKFVSRAWDLF 253
L+D+Y KC +S A +F
Sbjct: 445 LIDSYWKCSCLSDANRVF 462
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 35/243 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF + + + CN+++ G ++ H EA ++E+ +GL +R ++ KS A
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416
Query: 138 IYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------- 173
+ +Q+H+ A+K G D+ + N LI+ Y C CL
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSM 476
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
D + AIK+F M + ++P+ L ++L A A K+VH + + F
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
S L+ Y KC + A F + P W SA +G G A +
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSL--PERGVVSW--SAMIGGLAQHGHGKRALE 592
Query: 287 ISG 289
+ G
Sbjct: 593 LFG 595
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 52/281 (18%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP------CADY---------HVRLVFSQISNPTIY 91
L C T+ +KQ HAQ++ DP Y H R VF +S ++
Sbjct: 27 LHHCKTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVF 86
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
N++++GY N EA Y+ M + G P+R+ +P + K+C D + +H
Sbjct: 87 CWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNV 146
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+K GL D F+ N + Y+ C ++ DEA+
Sbjct: 147 VKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAV 206
Query: 181 KIFYRMEIENVK--PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+F M ++ P+ TLV VL A A D+ +H + ++G + L+
Sbjct: 207 MLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLIT 266
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
Y C ++ A +F ++ P N W SA + G+ G
Sbjct: 267 LYSNCGYIRMAKAVFDQI--PDRNVIVW--SAIIRCYGMHG 303
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS---- 86
N+N + CL LE C E Q+HA++ + +P A + L +S IS
Sbjct: 16 NHNQFQSFSLKSCLSLLEICKFTTEFAQLHARLTKLGFIKNPLALTRL-LCYSSISQYAN 74
Query: 87 ------------NPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFK 133
NP + N ++RGY + A LFY + ++ FP + K
Sbjct: 75 INYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGQNKLTFPFVLK 134
Query: 134 SCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+C+ + KQ+H K GL+ D F+ N+LI+MYSSC + A ++F +++
Sbjct: 135 ACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSSCGLIGF---ACQVFNKID--- 188
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
P+ V+ ++++ DL V+ + D S V L+D Y K + A
Sbjct: 189 -DPDVVSWNSMISGLV---DLGFVEEGKQMFDRMSKRSLVTW-NCLIDGYVKAGLLMEAR 243
Query: 251 DLFVKMLF 258
+LF +M F
Sbjct: 244 ELFDQMRF 251
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 34/246 (13%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQI 85
CL L C ++ KQIHA +L+ L DP CA DY RL F
Sbjct: 7 LCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRL-FRYT 65
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCAD---IYVE 141
NP ++ N+++RG + ++ L + EM P D F F + K+ A+ + V
Sbjct: 66 PNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVG 125
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201
QLH QA+ GL + F+ TLI+MY C + A K+F M +PNA+ +
Sbjct: 126 IQLHCQALVHGLDTHLFVGTTLISMYGECGFVGF---ARKVFDEMP----EPNAIAWNAM 178
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+TA R D++ + + + S ++ Y K + A ++F++M P
Sbjct: 179 VTACCRGGDMKGGRELFDLMPVRNLMSW----NVMLAGYTKAGELELAREMFLEM--PMK 232
Query: 262 NYGQWA 267
+ W+
Sbjct: 233 DDVSWS 238
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 39/218 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + ++++ G+ + EAF F+ E+ +G+ P+ + +CA
Sbjct: 222 AREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQ 281
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------------WCL 173
+ K LH K GLA ++N L++ YS C W
Sbjct: 282 AGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTS 341
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE-S 224
+EAI IF++ME ++P+ + +++L A + A V++ + D+
Sbjct: 342 MMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHA---GLVEQGCEYFDKMK 398
Query: 225 GFWS---HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
G ++ +E ++D Y + + +A++ +M P
Sbjct: 399 GMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIP 436
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+EA F ++ + ++PN +L VL+A A+A L K +H +++SG V + L
Sbjct: 251 EEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNAL 310
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
+D Y KC V A +F +++ N +M A + G
Sbjct: 311 LDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHG 350
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 51/260 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106
L KC+ + EL Q+ A ++RT H ++ P + N+I+R YT H
Sbjct: 66 LSKCANLIELNQLLAHIIRT----------HFLELY-----PAPFQWNNIIRSYTRLEAH 110
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTL 163
H A Y M G+ PD + P + K+ + +Q+HS AI+ GL + + +
Sbjct: 111 HYALSIYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGF 170
Query: 164 INMYS--------------------SCW-----CLDQ---PDEAIKIFYRMEIENVKPNA 195
I++YS W L Q EA+ +F M +P+
Sbjct: 171 ISVYSKAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDE 230
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT--TLMDAYCKCKFVSRAWDLF 253
VT+V+V +A L ++HKCV ++ + T +L+D Y KC + A+ +F
Sbjct: 231 VTMVSVTSACGSLGHLDLALQLHKCVYQAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVF 290
Query: 254 VKMLFPWNNYGQWAMSATVG 273
+M P N W S VG
Sbjct: 291 SRMDEP--NVSSWT-SMIVG 307
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VF Q + + N+I+ G + EA + EM G PD S+ +C +
Sbjct: 186 VFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGH 245
Query: 140 --VEKQLHS---QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194
+ QLH QA K SD+ N+L++MY C + D A ++F RM+ +PN
Sbjct: 246 LDLALQLHKCVYQA-KTSERSDTLTLNSLVDMYGKC---GRMDLAYRVFSRMD----EPN 297
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ +++ A L +C+ E+G
Sbjct: 298 VSSWTSMIVGYAMHGQLYDALECFRCMREAG 328
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 57/271 (21%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTI 90
L+ C+ + L +IH +++++ + FD D + + + + T+
Sbjct: 491 LKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTM 550
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+I+ G++ +A F+ M+ G+ PD F + ++ +CA+ + + KQ+H+Q
Sbjct: 551 VSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQ 610
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
IK L SD ++ +TL++MYS C + +EA
Sbjct: 611 IIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEA 670
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK---CVDESGFWSHVELKTTL 236
+K+F M++ NVKPN T V+VL RA A K +H + E G E + +
Sbjct: 671 LKLFESMQLVNVKPNHATFVSVL--RACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCM 728
Query: 237 MDAYCKCKFVSRAWDLFVKMLFP-----WNN 262
+D + + A +L KM F W N
Sbjct: 729 VDILGRSGRIDEALNLVQKMPFEADAVIWRN 759
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 49/268 (18%)
Query: 46 SLEKCSTMR---ELKQIHAQMLRTSLFFDPC-------------ADYHVRLVFSQISNPT 89
+L C+++R E +Q+H +++ + C A +F +
Sbjct: 389 ALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRD 448
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ N+I+ E + MI + PD F + S+ K+CA + ++H+
Sbjct: 449 AVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHT 508
Query: 147 QAIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQPDE 178
+ IK G+ DSF+ L++MY C W L Q ++
Sbjct: 509 RIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSED 568
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A K F RM V P+ T VL A + K++H + + S V + +TL+D
Sbjct: 569 AHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVD 628
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC + + +F K P ++ W
Sbjct: 629 MYSKCGNMQDSQLMFEKA--PNRDFVTW 654
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VFS++ + ++++ G + + E + EM G+ + ++ SLF+SCA +
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSA 297
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------------ 173
+ K+LHS A+K SD + ++MY+ C +
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D+ +A+K F + + + +TL L A A R ++VH +S S+
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + ++D Y KCK ++ A DLF M WN
Sbjct: 418 ICVANAILDMYGKCKALAEASDLFDMMERRDAVSWN 453
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 48/259 (18%)
Query: 51 STMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTCNSIV 97
S +R K++H+ L+++ D D + + V S + ++ + N+I+
Sbjct: 296 SALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAII 355
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLA 154
GY + +A + ++ GL D +CA I + +Q+H A+K
Sbjct: 356 VGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISM 415
Query: 155 SDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRM 186
S+ + N +++MY C L + +E + F M
Sbjct: 416 SNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASM 475
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
++P+ T +VL A A + L T +H + +SG + L+D YCKC +
Sbjct: 476 IHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMI 535
Query: 247 SRAWDLF----VKMLFPWN 261
+A + K + WN
Sbjct: 536 EKADKIHDRTEQKTMVSWN 554
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 32/219 (14%)
Query: 70 FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C + + R F ++ + + NS++ G+ ++ + EM G+ DR
Sbjct: 125 YASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASL 184
Query: 129 PSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------- 174
+ K+C + + Q+H +KFG D + L+ MY+ C LD
Sbjct: 185 AVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPE 244
Query: 175 --------------QPD---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
Q D E +++F M+ V + ++ + A LR K +
Sbjct: 245 KNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKEL 304
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
H +S F S + + T +D Y KC ++ A + M
Sbjct: 305 HSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSM 343
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 66/235 (28%)
Query: 51 STMRELKQIHAQMLRTSLFFD--------PCA--------DYHVRLVFSQISNPTIYTCN 94
++++ L Q+HA +LR+ F D C D+ ++ VFS I NP ++ N
Sbjct: 44 TSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALK-VFSSIPNPNVFIWN 102
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKF 151
+++G N +A FY M++ P++F +P+LFK+C+ + +Q+H +K
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
G+ SD + + I MY+S + ++A K+FY E
Sbjct: 162 GIGSDVHIKSAGIQMYAS---FGRLEDARKMFYSGE------------------------ 194
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
S V T++D Y KC + A LF +M P N G W
Sbjct: 195 ----------------SDVVCWNTMIDGYLKCGVLEAAKGLFAQM--PVKNIGSW 231
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 32/252 (12%)
Query: 52 TMRELKQIHAQMLRTSLFFD---PCADYHVRLVFSQI--------SNPTIYTC-NSIVRG 99
++E +QIH +++ + D A + F ++ S + C N+++ G
Sbjct: 147 AVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDG 206
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159
Y + A + +M V+ + M L K ++ ++L + + D
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKG-GNLGDARKLFDEMSE----RDEIS 261
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+++++ Y S + EA++IF +M+ E +P L +VL A + + + VH
Sbjct: 262 WSSMVDGYISA---GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQ 275
+ + L T L+D Y KC + W++F +M +F WN A +G
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWN--------AMIGGL 370
Query: 276 GLVGRHSTAHQI 287
+ GR A ++
Sbjct: 371 AIHGRAEDALEL 382
>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 698
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYVEK--QLHS 146
+ + S++ GY + EA + Y E+ QG+ P+ F F S+ K CA +E+ QLH+
Sbjct: 291 VVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHA 350
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
Q IK L DSF+ +TL++MY C + E
Sbjct: 351 QVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGRE 410
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLM 237
AI+ F RM ++PN + V++LTA + A + +K + + G E + ++
Sbjct: 411 AIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCII 470
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYG 264
D Y + + A+ +M N YG
Sbjct: 471 DTYGRAGRLDEAYKFISEMPIKPNAYG 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA--- 136
VF Q+ +++ GY A L + +M +GL+ D+ +F S+ +
Sbjct: 179 VFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLK 238
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------SCWCL------- 173
D ++ K +H K G + + N LI+MY+ W +
Sbjct: 239 DGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMI 298
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
D +EA+ I+ + + V+PN T +++ A L ++H V ++
Sbjct: 299 DGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI 358
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
+ +TL+D Y KC +S + LF ++ + WN
Sbjct: 359 RDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWN 396
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 46/252 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTS-------------LFFDPCADYHVRL-VFSQISNPT 89
L S + +R + +HA+++ + + CAD L +F+ +
Sbjct: 27 LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 86
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHS 146
+ ++V G + +H +A + M G+ P RF S ++ A + QLH
Sbjct: 87 AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHC 146
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
++ G ++ F+ + L +MYS C L + +
Sbjct: 147 VGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA 206
Query: 179 AIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
A+ F M+ E V + +VL+A +D K +H CV ++GF V ++ L+
Sbjct: 207 AVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 266
Query: 238 DAYCKCKFVSRA 249
D Y K V A
Sbjct: 267 DMYAKSMDVESA 278
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 37/227 (16%)
Query: 70 FDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D + + VF ++ ++ + S++ GY + L E +HEM +G+ PD F
Sbjct: 346 YSKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTV 405
Query: 129 PSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------- 174
++ +CA + + K +H + + D + N+L++MY+ C ++
Sbjct: 406 TAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPN 465
Query: 175 -----------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+P+E + +F M ++ +KP+ T+ +L A A L + +
Sbjct: 466 KDIVSWNTMIGGYSKNGRPNETLHLFVAM-VQELKPDGRTMACILPACASLAALDRGREI 524
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
H + +G + + + L+D Y KC ++ A F VK L W
Sbjct: 525 HGYIQRNGCFDDLHVANALIDMYAKCGALALARLFFDMIPVKDLISW 571
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ N I + NS++ G +L + + EM+ G+ D ++ +CA +
Sbjct: 257 VFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGN 316
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + LH+ AIK L NTL++MYS C L+
Sbjct: 317 FPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIAG 376
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E I++F+ ME E V+P+ T+ VL A A + L K VH V E+
Sbjct: 377 YAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKD 436
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +LMD Y KC + A +F++M + WN
Sbjct: 437 RIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWN 472
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 51/278 (18%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKCS---TMRELKQIHAQMLRTSLFFDP---------- 72
LD +NI+S +C + L+ C+ +++E K++H+ + + +F D
Sbjct: 89 LDMYPKSNIDSN---TYCSI-LQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMY 144
Query: 73 --CADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
C D R++F +I+N ++ N ++ GY E+ + +M+ G+ +
Sbjct: 145 VNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYLFRKMLDLGIQVNSHTVS 204
Query: 130 SLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMY------------------- 167
+ K A + K+ +H +K G S + + N+LI+ Y
Sbjct: 205 CILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTRKIEAAYEVFDELKNR 264
Query: 168 ---------SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
S D P++ I++F M V + VTLVNVL A A + + + +H
Sbjct: 265 DIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLH 324
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ + TL+D Y KC ++ A +F KM
Sbjct: 325 AFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKM 362
>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
Length = 859
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 11/203 (5%)
Query: 68 LFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
+ + C D R VF ++ + T NS++ GY EA M +G P
Sbjct: 194 VMYAKCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVV 253
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+ +L S A D+ V +L Q + G+A D +L++ + +D+ DEA++ F
Sbjct: 254 TWNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVH---MDRSDEALRCF 310
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
RM + V+PN +++ ++A A + L K +H + G ++V +L+D Y KC
Sbjct: 311 IRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKC 370
Query: 244 KFVSRAWDLFV----KMLFPWNN 262
+ AW +F K +F WN+
Sbjct: 371 GEIVAAWRIFSGIPDKDIFSWNS 393
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 34/213 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF + + ++++ Y + ++ + M+ +G++PDRF+ + ++CA
Sbjct: 101 AREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAY 160
Query: 137 --DIYVEKQLHSQAIK---FGLASDSFLHNTLINMYSSC----W---------CLD---- 174
D+ + + LHS AI+ G D + N+++ MY+ C W C D
Sbjct: 161 AEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVCRDLGTW 220
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+ +EA + M E +P VT ++++ AR DL + ++E
Sbjct: 221 NSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDVAMELLGQMEE 280
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
SG V T+L+ + A F++M
Sbjct: 281 SGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRM 313
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 28/197 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+FS I + I++ NS++ GY +A+ + +M G+ + + ++ Y+
Sbjct: 379 IFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISG----YI 434
Query: 141 EKQLHSQAIKF-------GLASDSFLHNTLI-----NMYSSCWCLDQPDEAIKIFYRMEI 188
+A + G+ D+ N LI N Y D AI+IF +M+
Sbjct: 435 RNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYY--------DRAIRIFRQMQA 486
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+P+ +T+++++ A V+ +H C+ ++ L++AY K ++
Sbjct: 487 LLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLAS 546
Query: 249 AWDLF----VKMLFPWN 261
A +F + + WN
Sbjct: 547 ACAVFDMHSSRNIISWN 563
>gi|7406390|emb|CAB85500.1| putative protein [Arabidopsis thaliana]
Length = 837
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 15/217 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+F +I + + N++V + H+AF LFY V+G D F +L SC D
Sbjct: 240 LFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSS 299
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
V ++LH +AI+ GL + ++N LI YS W + + ++ Y M + +AV
Sbjct: 300 VLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKK----VESLYEMMMAQ---DAV 352
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T ++TA + + + V E ++ LM +C+ +A LF M
Sbjct: 353 TFTEMITAYMSFGMVDSAVEIFANVTEKNTITY----NALMAGFCRNGHGLKALKLFTDM 408
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK 293
L +++++ V GLV + QI G C K
Sbjct: 409 LQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIK 445
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI 138
LVF +S+PT+ + +++ G++ NL EA + M GL+ P+ + F ++ +C +
Sbjct: 135 LVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRV 194
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMY-----SSCWCLDQPDEAIKIF 183
+ Q+H +K G + F+ N+L+++Y SSC D+ +K+F
Sbjct: 195 SRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSC------DDVLKLF 241
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 94 NSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
SI+ GY L +A LF+ + Q L D + C + + Q+H A+
Sbjct: 489 TSIIGGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYAL 548
Query: 150 KFGLASDSFLHNTLINMYS---------------------------SCWCLDQ-PDEAIK 181
K G SD L N+LI+MY+ SC+ L + DEA+
Sbjct: 549 KAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALA 608
Query: 182 IFYRMEIENVKPNAVTLVNVLTA 204
++ RM + +KP+ +TL V++A
Sbjct: 609 LWSRMNEKEIKPDIITLTLVISA 631
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 42/222 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F+ ++ T N+++ G+ +A + +M+ +G+ F S +C ++
Sbjct: 373 IFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSE 432
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ--------------- 175
V +Q+H IKFG A + + L++M + C DQ
Sbjct: 433 KKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSII 492
Query: 176 --------PDEAIKIFYRMEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
PD+A+ +F+R E + ++TL+ + R++ ++H ++
Sbjct: 493 GGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGY--QIHCYALKA 550
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
G++S + L +L+ Y KC A +F M + WN+
Sbjct: 551 GYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNS 592
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVH 218
+ LI+ +S L+ EA+K+F+RM V+PN T V +LTA R ++H
Sbjct: 148 YTALISGFSR---LNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGIQIH 204
Query: 219 KCVDESGFWSHVELKTTLMDAYCK 242
+ +SGF + V + +LM Y K
Sbjct: 205 GLIVKSGFLNSVFVSNSLMSLYDK 228
>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 745
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 52/260 (20%)
Query: 39 QAHFCLVSLEKCS-----TMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC 93
Q C S CS +++ Q+HA ++T F +P FSQ
Sbjct: 3 QLILCSPSFSGCSGHSHLNLQQTHQLHAHFIKTQ-FHNP------HPFFSQSHFTPEANY 55
Query: 94 NSIVRGYTNKNLHHEAFLFY-HEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAI 149
N ++ YTN +L +F Y H D F+ PSL K+CA + ++LH A
Sbjct: 56 NLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQ 115
Query: 150 KFGLASDSFLHNTLINMYSSCWCL-------DQ-PD--------------------EAIK 181
K G ASD F+ N L+NMY C CL DQ P+ EA++
Sbjct: 116 KNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALR 175
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-----DESGFWSHVELKTTL 236
+ M+ VK + V L++++ D+++ + VH + DE V + T L
Sbjct: 176 LVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEK---MEVSMTTAL 232
Query: 237 MDAYCKCKFVSRAWDLFVKM 256
+D YCK ++ A LF ++
Sbjct: 233 IDMYCKGGCLASAQRLFDRL 252
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 37/207 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F ++S ++ + ++ G E ++ M+ + L P+ SL C
Sbjct: 248 LFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGT 307
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------ 171
+ + K H+ ++ G L LI+MY C W
Sbjct: 308 LDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISA 367
Query: 172 -----CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
C+DQ +F M +VKPN VT+V++L+ A A L K H ++ G
Sbjct: 368 YAHVSCMDQ---VFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGL 424
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
V L+T L++ Y KC V+ A LF
Sbjct: 425 EVDVILETALINMYAKCGDVTIARSLF 451
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 44/198 (22%)
Query: 51 STMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNSIV 97
T+ K HA +LR + C + R +F+ + + + ++
Sbjct: 306 GTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLI 365
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA 154
Y + + + F + EM+ + P+ SL CA+ + + K H+ + GL
Sbjct: 366 SAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLE 425
Query: 155 SDSFLHNTLINMYSSCWCLD----------QPD------------------EAIKIFYRM 186
D L LINMY+ C + Q D EA+++F M
Sbjct: 426 VDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEM 485
Query: 187 EIENVKPNAVTLVNVLTA 204
E V+PN +T V++ A
Sbjct: 486 ESHGVEPNDITFVSIFHA 503
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 106/265 (40%), Gaps = 73/265 (27%)
Query: 49 KCSTMRELKQIHAQM-LRTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRG 99
KC + + + +M R ++ ++ HVRL +F ++ N TI + +I+ G
Sbjct: 142 KCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISG 201
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASD 156
YT + +A + EM + G+ PD S+ +CA + K +H + GL
Sbjct: 202 YTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRR 261
Query: 157 SFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEI 188
+ + N LI MY+ C C+DQ EAI IF RM+
Sbjct: 262 TCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQ 321
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-----------------HVE 231
N+KPN +T V +L+A A A GFW +E
Sbjct: 322 TNIKPNGITFVGLLSACAHA----------------GFWEEGLMYFDTMKKDFHIEPEIE 365
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM 256
+L+D + +S+A D+ KM
Sbjct: 366 HYGSLVDLLGRAGRLSQALDIVEKM 390
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 38/230 (16%)
Query: 53 MRELKQIHAQMLRTSL---------FFDPC-----ADYHVRLVFSQISNPTIYTCNSIVR 98
M ELK+ HA +++ +L D C DY +F ++ +P Y N+++R
Sbjct: 1 MAELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDY-ASFLFKEVIDPNAYLYNAMIR 59
Query: 99 GYTNKNLHHEAFLFYHEMIVQG---------LIPDRFMFPSLFKSCADIYVE---KQLHS 146
T+ +++ FY +M+ + ++PD F FP + K+CA + + KQ+H+
Sbjct: 60 ACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHA 119
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
Q KFG S N LI+MY+ C D +A +F M + A++ +++
Sbjct: 120 QFFKFGKKSHLITENALIDMYTKC---DNLLDAHNLFDEMH----ERGAISWNGIISGHV 172
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R L ++R DE + V T ++ Y + A D+F +M
Sbjct: 173 R---LGQMRRARALFDEMPNRTIVSW-TAIISGYTRIGSYIDALDVFREM 218
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +S T N ++ GY L E+ +F++EMI G++PD F SL S + +
Sbjct: 292 LFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFEN 351
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ +Q+H ++ ++ D FL + LI+ Y C +
Sbjct: 352 LEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISG 411
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+A+++F + + PN +TLV++L L+ + +H + + GF +
Sbjct: 412 YLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNR 471
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ ++D Y KC ++ A+++F ++ + WN+
Sbjct: 472 CNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNS 508
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 55/262 (20%)
Query: 47 LEKCSTM---RELKQIHAQMLRTSLFFDPCADYHVRLVFSQISN---------------P 88
L+ CS + R+ KQ+HA ++ + D D + +++ +
Sbjct: 38 LQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLS 97
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---------- 138
+I NSI+ + L ++A FY +M+ G+ PD FP L K+C +
Sbjct: 98 SIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLS 157
Query: 139 ------------YVEKQLHSQAIKFG------------LASDSFLHNTLINMYSSCWCLD 174
+V L +++G L D + N ++N Y+ C
Sbjct: 158 DTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKC---G 214
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
D IK F M ++ + PNAVT VL+ A + ++H V SG +K
Sbjct: 215 ASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN 274
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
+L+ Y KC A LF M
Sbjct: 275 SLLSMYSKCGRFDDAIKLFRMM 296
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 48/267 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTI 90
L S+ K + +QIH ++R S+ D C + + +FSQ ++ +
Sbjct: 343 LPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDV 402
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+++ GY + L+ +A + ++ + P+ S+ + + ++LH
Sbjct: 403 VVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGF 462
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEA 179
IK G + + +I+MY+ C + D P A
Sbjct: 463 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAA 522
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I IF +M + + + V++ L+A A K +H + + V ++TL+D
Sbjct: 523 IDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDM 582
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNN 262
Y KC + A ++F M + WN+
Sbjct: 583 YAKCGNLKAAMNVFDTMKEKNIVSWNS 609
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F ++S I + NS++ + A + +M V G+ D + +CA++
Sbjct: 494 IFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPS 553
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
E K +H IK LA D + +TLI+MY+ C L A+ +F M+ +N+ V+
Sbjct: 554 ESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKA---AMNVFDTMKEKNI----VS 606
Query: 198 LVNVLTARARARDLR-TVKRVHKCVDESG 225
+++ A L+ ++ H+ V++SG
Sbjct: 607 WNSIIAAYGNHGKLKDSLCLFHEMVEKSG 635
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 110/248 (44%), Gaps = 45/248 (18%)
Query: 57 KQIHAQMLRTSL-------------FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH ++R+ L + + R VF Q++ + + N+++ G T
Sbjct: 955 KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVEKQLHSQAIKFGLASDSFL 159
L + + ++ L+PD+F S+ ++C+ + Y+ Q+H+ A+K G+ DSF+
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV 1074
Query: 160 HNTLINMYSSCWCLDQPD----------------------------EAIKIFYRMEIENV 191
LI++YS +++ + +A++++ M+
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE 1134
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
+ + +TLVN A L+ K++H V + GF + + + ++D Y KC + A
Sbjct: 1135 RSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARR 1194
Query: 252 LFVKMLFP 259
+F ++ P
Sbjct: 1195 VFSEIPSP 1202
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 53 MRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTIYTCNSIVRG 99
+++ KQIHA +++ D C + R VFS+I +P +++ G
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD 156
A YH+M + + PD + F +L K+C+ + +Q+H+ +K A D
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD 1273
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
F+ +L++MY+ C ++ EA++ F M+
Sbjct: 1274 PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333
Query: 189 ENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
V P+ VT + VL+A + + + + + G +E + L+DA + +
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393
Query: 248 RAWDLFVKMLF 258
A + M F
Sbjct: 1394 EAEKVISSMPF 1404
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK--S 134
R++F ++ + N +++ Y + L +EA L + E G PD +L +
Sbjct: 813 EARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVK 872
Query: 135 CADIYVE-KQLHSQAIKFGL----ASDSFLHNTLINMY---SSCWCLDQPDEAIKIFYRM 186
C +E KQ + A K + SD + N ++ + W EA+ F M
Sbjct: 873 CKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAW------EAVDCFVDM 926
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
V + +T V +LT A L K++H V SG V + L++ Y K V
Sbjct: 927 INSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSV 986
Query: 247 SRAWDLFVKM----LFPWN 261
SRA +F +M L WN
Sbjct: 987 SRARSVFGQMNEVDLISWN 1005
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 51 STMRELKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTIYTCNSIV 97
+ + + +QIHA +++ + FDP C + R +F + + I + N+++
Sbjct: 1253 TALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMI 1312
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC------ADIYVEKQLHSQAIKF 151
G EA F+ M +G++PDR F + +C ++ Y + +S +
Sbjct: 1313 VGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAY--ENFYSMQKNY 1370
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
G+ + ++ L++ S + +EA K+ M E TL+N + D
Sbjct: 1371 GIEPEIEHYSCLVDALSRA---GRIEEAEKVISSMPFEASASMYRTLLNACRVQV---DR 1424
Query: 212 RTVKRV 217
T KRV
Sbjct: 1425 ETGKRV 1430
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 48/212 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
V L+ C+++ EL KQIHA + + L + P D++++ F +I P
Sbjct: 288 VVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREP 347
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSC---ADIYVEKQL 144
+ ++I+ GY + EA + + + ++ + F + S+F++C AD + Q+
Sbjct: 348 NDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQV 407
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD----------------- 177
H+ AIK L + + LI MYS C CLD PD
Sbjct: 408 HADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNA 467
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
EA+++F +M +KPN+VT + VLTA + A
Sbjct: 468 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHA 499
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F ++S+ + +++ Y + L +A + M+ G P M+ +L KS +
Sbjct: 138 LFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRA 197
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------DQ--------------- 175
+ + +Q+H+ I+ GL S++ + ++NMY C L DQ
Sbjct: 198 LDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVG 257
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+A+K+F + E V+ ++ VL A A +LR K++H CV + G
Sbjct: 258 YTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECE 317
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
V + T L+D Y KC A F ++ P
Sbjct: 318 VSVGTPLVDFYIKCSSFESACRAFQEIREP 347
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 120/307 (39%), Gaps = 52/307 (16%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+QIHA ++R L + + + + VF Q++ ++ GYT
Sbjct: 202 RQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQA 261
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
+A + ++I +G+ D F+F + K+CA ++ KQ+H+ K GL + +
Sbjct: 262 GRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVG 321
Query: 161 NTLINMYSSC---------------------------WC-LDQPDEAIKIFYRMEIEN-V 191
L++ Y C +C + Q +EA+K F + +N V
Sbjct: 322 TPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAV 381
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
N+ T ++ A + D +VH + ++ L+ Y KC + A +
Sbjct: 382 VLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHE 441
Query: 252 LFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG---PCPKKAHKLFFFSMLKKVH 308
+F M +N A +A + G S A ++ C K + + F ++L
Sbjct: 442 VFESM----DNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACS 497
Query: 309 VPGVLIQ 315
G++ Q
Sbjct: 498 HAGLVEQ 504
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS-FLHNT 162
+EAF F+ EM G+ + + LF++C ++ + LH++ ++ G+ + S L N
Sbjct: 63 NEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNR-MRMGIENPSVLLQNC 121
Query: 163 LINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKPN 194
++ MY C L+ D+A+ +F RM KP
Sbjct: 122 VLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPP 181
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
+ +L + R L +++H V +G S+ ++T +++ Y KC ++ A +F
Sbjct: 182 SSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFD 241
Query: 255 KM 256
+M
Sbjct: 242 QM 243
>gi|79506598|ref|NP_196000.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170265|sp|Q9FFN1.1|PP363_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g03800; AltName: Full=Protein EMBRYO DEFECTIVE 175
gi|9758009|dbj|BAB08606.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|26449508|dbj|BAC41880.1| unknown protein [Arabidopsis thaliana]
gi|58013014|gb|AAW62960.1| embryo-defective 175 [Arabidopsis thaliana]
gi|58013016|gb|AAW62961.1| embryo-defective 175 [Arabidopsis thaliana]
gi|332003273|gb|AED90656.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 896
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 15/217 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCADIY 139
+F +I + + N++V + H+AF ++EM V+G D F +L SC D
Sbjct: 240 LFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSS 299
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
V ++LH +AI+ GL + ++N LI YS W + + ++ Y M + +AV
Sbjct: 300 VLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKK----VESLYEMMMAQ---DAV 352
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T ++TA + + + V E ++ LM +C+ +A LF M
Sbjct: 353 TFTEMITAYMSFGMVDSAVEIFANVTEKNTITY----NALMAGFCRNGHGLKALKLFTDM 408
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK 293
L +++++ V GLV + QI G C K
Sbjct: 409 LQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIK 445
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI 138
LVF +S+PT+ + +++ G++ NL EA + M GL+ P+ + F ++ +C +
Sbjct: 135 LVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRV 194
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMY-----SSCWCLDQPDEAIKIF 183
+ Q+H +K G + F+ N+L+++Y SSC D+ +K+F
Sbjct: 195 SRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSC------DDVLKLF 241
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 94 NSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
SI+ GY L +A LF+ + Q L D + C + + Q+H A+
Sbjct: 489 TSIIGGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYAL 548
Query: 150 KFGLASDSFLHNTLINMYS---------------------------SCWCLDQ-PDEAIK 181
K G SD L N+LI+MY+ SC+ L + DEA+
Sbjct: 549 KAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALA 608
Query: 182 IFYRMEIENVKPNAVTLVNVLTA 204
++ RM + +KP+ +TL V++A
Sbjct: 609 LWSRMNEKEIKPDIITLTLVISA 631
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 42/222 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F+ ++ T N+++ G+ +A + +M+ +G+ F S +C ++
Sbjct: 373 IFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSE 432
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ--------------- 175
V +Q+H IKFG A + + L++M + C DQ
Sbjct: 433 KKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSII 492
Query: 176 --------PDEAIKIFYRMEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
PD+A+ +F+R E + ++TL+ + R++ ++H ++
Sbjct: 493 GGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGY--QIHCYALKA 550
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
G++S + L +L+ Y KC A +F M + WN+
Sbjct: 551 GYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNS 592
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVH 218
+ LI+ +S L+ EA+K+F+RM V+PN T V +LTA R ++H
Sbjct: 148 YTALISGFSR---LNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGIQIH 204
Query: 219 KCVDESGFWSHVELKTTLMDAYCK 242
+ +SGF + V + +LM Y K
Sbjct: 205 GLIVKSGFLNSVFVSNSLMSLYDK 228
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 48/262 (18%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
+ L+ C+ + EL +QIH +++ L + P D++V+ F IS P
Sbjct: 217 IVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEP 276
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ ++++ GY EA + + + + + F + S+F++C AD Q H
Sbjct: 277 NDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAH 336
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD------------------ 177
+ AIK L + + +I MYS C +D PD
Sbjct: 337 ADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAP 396
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTL 236
EA+K+F RM+ V+PNAVT + VLTA + + + ++ + + + G + ++ +
Sbjct: 397 EALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCM 456
Query: 237 MDAYCKCKFVSRAWDLFVKMLF 258
+D Y + F+ A +L M F
Sbjct: 457 VDIYSRAGFLQEALELIRSMPF 478
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 44/260 (16%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
L SL S + KQIH+ +R+ L + + + LVF ++S
Sbjct: 118 LRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNA 177
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
I+ GYT +A + +M+ +G+ D ++F + K+CA ++ +Q+H
Sbjct: 178 VAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGH 237
Query: 148 AIKFGLASDSFLHNTLINMYSSC---------------------------WC-LDQPDEA 179
+K GL S+ + L++ Y C +C + + +EA
Sbjct: 238 IVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEA 297
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+K F + +V N+ T ++ A + D + + H +S ++ ++ ++
Sbjct: 298 LKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITM 357
Query: 240 YCKCKFVSRAWDLFVKMLFP 259
Y +C + A +F + P
Sbjct: 358 YSRCGRLDYATRVFESIDDP 377
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 37/163 (22%)
Query: 128 FPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
+ LF++C I + + H Q + FL N+++ MY C L +A K+F
Sbjct: 13 YKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLA---DARKVFD 69
Query: 185 RMEIENV-------------------------------KPNAVTLVNVLTARARARDLRT 213
M N+ KPN T + L + L
Sbjct: 70 EMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEI 129
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
K++H SG S+ + T + + Y KC ++ A +F KM
Sbjct: 130 GKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKM 172
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC---------------ADYHVRLVFSQISNPTIY 91
+ +CS++R KQI Q++ L D A Y ++ S S + +
Sbjct: 13 ISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVLSSF 72
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
+ N+++ Y + Y + G PD F FP +FK+C I KQ+H
Sbjct: 73 SYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE------------------- 189
K G D ++ N+L++ Y C + A K+F M +
Sbjct: 133 TKMGFYDDIYVQNSLVHFYGVC---GESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYK 189
Query: 190 ---------NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+V+PN T V VL + R L K +H + + +E L+D Y
Sbjct: 190 EALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMY 249
Query: 241 CKCKFVSRAWDLFVKM 256
KC+ +S A +F ++
Sbjct: 250 VKCEQLSDAMRVFGEL 265
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 109/262 (41%), Gaps = 52/262 (19%)
Query: 49 KCSTMRELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNS 95
K S +RE KQIH + + F+ C + + VF ++ + +
Sbjct: 118 KFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTG 177
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQ--------------------------GLIPDRFMFP 129
I+ G+T L+ EA + +M V+ GLI R
Sbjct: 178 IITGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLI 237
Query: 130 SLFKSCA--DIYVEKQLHSQAIK-FGL--ASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
SL A D+YV+ + S A++ FG D N++I+ C ++ EAI +F
Sbjct: 238 SLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHC---ERSKEAIDLFS 294
Query: 185 RMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
M+ +KP+ L +VL+A A + + VH+ + +G + T ++D Y KC
Sbjct: 295 LMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKC 354
Query: 244 KFVSRAWDLF----VKMLFPWN 261
++ A ++F K +F WN
Sbjct: 355 GYIETALEIFNGIRSKNVFTWN 376
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 55/270 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL--------------FFDPCADYHVRL-VFSQISNP 88
L C R LKQ +H +L++ + C+D +F Q+S
Sbjct: 75 LRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR 134
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
++ ++ G L + F F+ EM QG+ PD+F + + + C I + +H
Sbjct: 135 NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVH 194
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
+Q + G S +F+ L+NMY+ ++
Sbjct: 195 AQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYL 254
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A +F RM E V P+A T + V A RD+ K V E G S+ + T L+
Sbjct: 255 DAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALI 314
Query: 238 DAYCKCKFVSRAWDLF------VKMLFPWN 261
D KC + A +F + PWN
Sbjct: 315 DMNSKCGSLQEARSIFNSHFITCRFNAPWN 344
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 47/212 (22%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSL-------------FFDPCADYH-VRLVFS 83
Y + F ++ KC ++ K++HA+ +++ L + C VR VF+
Sbjct: 378 YCSVFNAIAALKCLSLG--KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFN 435
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--- 140
++ + + + S+V Y+ + +A + M +G+ P++F F S+ SCA++ +
Sbjct: 436 RMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
+Q+H K GL D + + L++MY+ C CL
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555
Query: 177 ----DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+A+++F RM V+PNAVT + VL A
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFA 587
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIK 150
N+++ GY + +A + +M + D + + S+F + A + + K++H++AIK
Sbjct: 344 NAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403
Query: 151 FGLASDSF-LHNTLINMYSSCWCLD----------------------------QPDEAIK 181
GL + + N + N Y+ C L+ + D+AI+
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
IF M E + PN T +VL + A L ++VH + + G +++ L+D Y
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYA 523
Query: 242 KCKFVSRAWDLFVKM 256
KC + A +F ++
Sbjct: 524 KCGCLGDAKKVFNRI 538
>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 41 HFCLVSLEKCSTMR---ELKQIHAQMLRTSL------------FFDPCADYHVRLVFSQI 85
+ C L+ S+++ + KQ+HAQ+LRTSL + + + L+F+ +
Sbjct: 6 NLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSL 65
Query: 86 -SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVE 141
S PT SI+R YT+ L + F+ +M+ G PD +FPS+ KSC D+
Sbjct: 66 PSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFG 125
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ +H I+ G+ D + N L+NMYS W L++ + K+F + +V
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDV 175
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
L+ C+ M++L+ +H ++R + FD +YTCN+++ Y+ K
Sbjct: 113 LKSCTLMKDLRFGESVHGCIIRLGMGFD------------------LYTCNALMNMYS-K 153
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS-------QAIKFGLASD 156
E Y ++ +G +D+Y +K+ S + + D
Sbjct: 154 FWSLEEVNTYKKVFDEG-------------KTSDVYSKKEKESYYLGSLRKVFEMMPKRD 200
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
NT+I+ + ++A+ + M +++P++ TL +VL A +L K
Sbjct: 201 IVSWNTVISGNAQN---GMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKE 257
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+H +G+ + V + ++L+D Y KC V + +F + P ++ W
Sbjct: 258 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF--YMLPQHDGISW 305
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 35/239 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R +F ++ P + N+I++GY + +A Y +M G+ PD F FP + K+CA
Sbjct: 87 YARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACA 146
Query: 137 DIY----------------------VEKQLHSQAIKFG-LASDSFLHNTLINMYSSCW-- 171
++ V +L +KFG L FL +++ W
Sbjct: 147 ELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNA 206
Query: 172 ----CLDQ--PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+ +A++ F M + +KP++VT+V+ L+A L T + +++ E G
Sbjct: 207 LIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEG 266
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
S++ + +D KC + +A +LF +M P N W S +G + G A
Sbjct: 267 IDSNIIVHNARLDMCAKCGDMDKAMNLFDEM--PQRNVISW--STVIGGYAVNGESEKA 321
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 110/277 (39%), Gaps = 52/277 (18%)
Query: 37 QYQAHFCLVSLEKCSTMREL----KQIHAQMLRTSLF------------FDPCADYHVRL 80
+ + F S+ T+ EL KQIH ++ L + C L
Sbjct: 205 EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDAL 264
Query: 81 -VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
F S+ T ++++ G +A + M + G+ P F F + +C+D+
Sbjct: 265 QTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLG 324
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD--------- 177
+ KQ+H +K G S ++ L++MY+ C L +PD
Sbjct: 325 AAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG 384
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+A+ ++ RME+E + PN +T+ +VL A + L K++H + GF
Sbjct: 385 GYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL 444
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V + + L Y KC + +F +M + WN
Sbjct: 445 EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWN 481
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 45/247 (18%)
Query: 52 TMRELKQIHAQMLRTSL-----------FFDPCADY-HVRLVFSQISNPTIYTCNSIVRG 99
++++ K +HAQ++++S + C + VF +I N + + N I+ G
Sbjct: 21 SLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80
Query: 100 YTNKNLHHEAFL--FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLA 154
Y+ + + + M + P+ F +F + + D + H+ AIK
Sbjct: 81 YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSC 140
Query: 155 SDSFLHNTLINMY--------------------SSCWCL--------DQPDEAIKIFYRM 186
D F+ ++L+NMY S W EA+ +F M
Sbjct: 141 RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLM 200
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
E N +VL+A + K++H ++G S V + L+ Y KC +
Sbjct: 201 RREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSL 260
Query: 247 SRAWDLF 253
A F
Sbjct: 261 DDALQTF 267
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------- 176
K LH+Q IK +S ++ N+L+N+Y+ C L +
Sbjct: 26 KALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQH 84
Query: 177 -----DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
+++F RM EN PNA T V TA + D + H + V
Sbjct: 85 GPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVF 144
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQGLVGRHSTAHQISGP 290
+ ++LM+ YCK A +F M P N WA M + Q L ++
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTM--PERNSVSWATMISGYASQKLAAEALGLFRLMRR 202
Query: 291 CPKKAHKLFFFSMLKKVHVP 310
+ ++ F S+L + +P
Sbjct: 203 EEEGENEFVFTSVLSALTLP 222
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 55/270 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL--------------FFDPCADYHVRL-VFSQISNP 88
L C R LKQ +H +L++ + C+D +F Q+S
Sbjct: 75 LRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR 134
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
++ ++ G L + F F+ EM QG+ PD+F + + + C I + +H
Sbjct: 135 NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVH 194
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------------------- 177
+Q + G S +F+ L+NMY+ ++
Sbjct: 195 AQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYL 254
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+A +F RM E V P+A T + V A RD+ K V E G S+ + T L+
Sbjct: 255 DAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALI 314
Query: 238 DAYCKCKFVSRAWDLF------VKMLFPWN 261
D KC + A +F + PWN
Sbjct: 315 DMNSKCGSLQEARSIFNSHFITCRFNAPWN 344
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 47/212 (22%)
Query: 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSL-------------FFDPCADYH-VRLVFS 83
Y + F ++ KC ++ K++HA+ +++ L + C VR VF+
Sbjct: 378 YCSVFNAIAALKCLSLG--KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFN 435
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--- 140
++ + + + S+V Y+ + +A + M +G+ P++F F S+ SCA++ +
Sbjct: 436 RMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
+Q+H K GL D + + L++MY+ C CL
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555
Query: 177 ----DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D+A+++F RM V+PNAVT + VL A
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFA 587
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIK 150
N+++ GY + +A + +M + D + + S+F + A + + K++H++AIK
Sbjct: 344 NAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403
Query: 151 FGLASDSF-LHNTLINMYSSCWCLD----------------------------QPDEAIK 181
GL + + N + N Y+ C L+ + D+AI+
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
IF M E + PN T +VL + A L ++VH + + G +++ L+D Y
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYA 523
Query: 242 KCKFVSRAWDLFVKM 256
KC + A +F ++
Sbjct: 524 KCGCLGDAKKVFNRI 538
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 108/254 (42%), Gaps = 44/254 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTIYTC 93
L + +T+R+ K+IH ++R + D C D + R +F Q + I C
Sbjct: 359 LSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVC 418
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIK 150
+++ GY +++ A + ++ + + + S+ +CA + + K+LH +K
Sbjct: 419 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK 478
Query: 151 FGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKI 182
G ++ + +++MY+ C LD +P+EAI +
Sbjct: 479 NGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDL 538
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M + K + V++ L+A A L K +H + F S + ++ L+D Y K
Sbjct: 539 FRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 598
Query: 243 CKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 599 CGNLDLACRVFDTM 612
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 44/243 (18%)
Query: 58 QIHAQMLRTSLFFD-PCAD------------YHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
Q+H ++ + L D P A+ + R +F + + T N ++ GY
Sbjct: 269 QLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNG 328
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPS---LFKSCADIYVEKQLHSQAIKFGLASDSFLHN 161
EA +HEMI + PD F S L A + K++H I+ G++ D FL +
Sbjct: 329 FMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKS 388
Query: 162 TLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKP 193
LI++Y C ++ + A++IF + E ++
Sbjct: 389 ALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRA 448
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
N+VTL +VL A A L K +H + ++G + + +MD Y KC + A F
Sbjct: 449 NSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTF 508
Query: 254 VKM 256
+ +
Sbjct: 509 IGI 511
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 106/271 (39%), Gaps = 52/271 (19%)
Query: 44 LVS-LEKC---STMRELKQIHAQMLRTSLFFDP------------CADY-HVRLVFSQIS 86
LVS L+ C S + + +Q HAQML + ++ C + + +F Q+
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
N ++RG+T A LFY +M+ G +PD++ FP + K+C + + +
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
+H + G D F+ ++LI YS C+
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
D A +F M PN+VT VL+ A + ++H V SG + T
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L+ Y KC + A LF M L WN
Sbjct: 289 LLAMYAKCGHLFDARRLFDMMPKTDLVTWNG 319
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 90/219 (41%), Gaps = 33/219 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
F IS+ NS++ + EA + +M + G D + +CA++
Sbjct: 507 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+ K++H+ ++ SD F + LI+MYS C LD
Sbjct: 567 LHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAA 626
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGFWS 228
+ +++ +F+ M + ++P+ VT + +++A A + +C+ +E G +
Sbjct: 627 YGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMA 686
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+E ++D + + ++ A+ + M F + G W
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSMPFS-PDAGVWG 724
>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
Length = 721
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + T ++V G+ H+A L EM G+ P+ + SL S A D
Sbjct: 172 VFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPED 231
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------------------- 171
I KQ+H +K GL D F+ + L+ MYS C
Sbjct: 232 IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISG 291
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
CL + EA + F M + T +VL A + L ++VH + + G+ S
Sbjct: 292 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSV 351
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
V+++ +L+ Y + + + +F+ M P WN+
Sbjct: 352 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNS 388
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 35/237 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F Q+ T T N+++ G+ A + M G+ P S+ +C D
Sbjct: 71 LFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLED 130
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
LHS + G + + L++MY+ C L
Sbjct: 131 AAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAG 190
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+P +A+ + ME V PN +T ++L++ A D+ K+VH V + G
Sbjct: 191 FVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 250
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+ + L+ Y KC + FVK+ + Q + ++ + +GR A Q
Sbjct: 251 QFVLSALVTMYSKCGILEN----FVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQ 303
>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
Length = 1027
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F+Q+ +I N+++ G+ N EA + +++ GL P F S+ C+
Sbjct: 582 RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGS 641
Query: 137 -DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + KQ+H +K G L D+ L +L +Y L+
Sbjct: 642 LNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTA 701
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
D ++ F+RM NV+ + T +VL A + K +H + +SG
Sbjct: 702 IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 761
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
F S+ + L+D Y KC V +++ F ++ + PWN+
Sbjct: 762 FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNS 803
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H + ++ P+ N+++ G+ L Y +M GL P R F S+ + A
Sbjct: 277 HATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAA 336
Query: 137 DI--YVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------ 175
++ +VE +Q+H+ A+ GL ++ F+ ++LIN+Y+ C C
Sbjct: 337 NMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNA 396
Query: 176 ----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KC 220
P+EAI++F M ++ + T V++L A K+VH C
Sbjct: 397 MLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNC 456
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+D S F ++ L D Y K + A LF L P+ + W
Sbjct: 457 MDISLFVANATL-----DMYSKYGAIGDAKALF--SLIPYKDSISW 495
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ +FS I + N++ G EA M + G+ PD F + +C++
Sbjct: 480 AKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN 539
Query: 138 IYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
I KQ+H AIK+G+ S+ + ++LI++YS ++
Sbjct: 540 IRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINAL 599
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG- 225
DEAI++F ++ + +KP++VT ++L+ + + + K+VH +SG
Sbjct: 600 IAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGV 659
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
+ L +L Y K K + A L +M LF W
Sbjct: 660 LYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWT 700
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I N+++ G+ L EA + M+ L D F F S+ +C +
Sbjct: 382 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 441
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
Y+ KQ+H IK + F+ N ++MYS +
Sbjct: 442 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 501
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ +EA+ + RM + + P+ V+ + A + R T K++H + G S+
Sbjct: 502 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSN 561
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y K V + +F ++
Sbjct: 562 HAVGSSLIDLYSKHGDVESSRKIFAQV 588
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 47/195 (24%)
Query: 57 KQIHAQMLRTSLFFDPC------ADYHVRLVFSQISNP---------TIYTCNSIVRGYT 101
KQ+H L++ + +D A +++ + +N ++ +I+ GY
Sbjct: 648 KQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYA 707
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSF 158
+ + + M + D F S+ K+C+D+ K++H K G S
Sbjct: 708 QNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYET 767
Query: 159 LHNTLINMYSSCWCL-----------------------------DQPDEAIKIFYRMEIE 189
+ LI+MYS C + DEA+ +F +ME
Sbjct: 768 ATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEEL 827
Query: 190 NVKPNAVTLVNVLTA 204
+KP+ VT + VL A
Sbjct: 828 QIKPDEVTFLGVLIA 842
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 31/233 (13%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------CADYHVR-------LVFSQISNPTI 90
+ L KC+ +KQIHAQ+++ L DP A Y + VF+Q+ +P +
Sbjct: 26 ITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNV 85
Query: 91 YTCNSIVRGYT---NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD----IYVEKQ 143
+ N ++R Y+ N++ AF +M V G++ D F +P L K C + + K
Sbjct: 86 HLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKM 145
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+H+ K G D F+ N+LI+ Y C C D + A+K+F ME +V V+ +++
Sbjct: 146 VHAHVEKLGFYWDIFVPNSLIDCY--CRCGD-VEMAMKVFSGMEERDV----VSWNSMVG 198
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ DL +V + E S T++D + K + +A+ LF +M
Sbjct: 199 GLVKNGDLDGALKVFDEMPERDRVSW----NTMLDGFTKAGEMDKAFKLFERM 247
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R++F + + +I+ GY K EA EM GL D F S+ +CA+
Sbjct: 272 RMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAES 331
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+ + K++H ++ + + N+ I+MY+ C C+ D+A ++F M+ E
Sbjct: 332 GMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCV---DDAFRVFNGMKTE 382
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 13/187 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + N+++ G+T +AF + M + ++ M K+ D+ +
Sbjct: 212 VFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKN-GDMDM 270
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
+ L + L L T+I+ Y+ Q EA+ + ME ++ + ++
Sbjct: 271 ARMLFDRCPVKNLV----LWTTIISGYAE---KGQVKEAMNLCDEMEKSGLRLDDGFFIS 323
Query: 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM---- 256
+L A A + L K++H S F ++ + +D Y KC V A+ +F M
Sbjct: 324 ILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEK 383
Query: 257 -LFPWNN 262
L WN+
Sbjct: 384 DLVSWNS 390
>gi|302780131|ref|XP_002971840.1| hypothetical protein SELMODRAFT_96526 [Selaginella moellendorffii]
gi|300160139|gb|EFJ26757.1| hypothetical protein SELMODRAFT_96526 [Selaginella moellendorffii]
Length = 378
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF++I P +Y+ IV Y HEA M + G PD+ + +CA
Sbjct: 10 EARCVFAKIPAPNLYSWTMIVTAYAQNGHPHEALGLLRRMDLDGTPPDKVVLSIAVTACA 69
Query: 137 DI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSC----------------------W 171
I + KQ+H + G+ D FL ++LIN+Y +C W
Sbjct: 70 SICALSLGKQIHHRVATLGVIDD-FLRSSLINLYGTCGEISLAKSVFDSMAAGATNLVCW 128
Query: 172 CL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-KCVD 222
Q I++F+ V+P+AVTLV+ + A DL+ + +H + +
Sbjct: 129 ATMIKAFARCGQFLAGIELFWEWISRGVEPDAVTLVSAVDCCAGLGDLQQSQAIHARVLA 188
Query: 223 ESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+G S+ +++ ++D Y +C V A LF +M
Sbjct: 189 AAGMESNEIKVSNAILDMYARCGSVDDARALFDRM 223
>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
Length = 617
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYVEK--QLHS 146
+ + S++ GY + EA + Y E+ QG+ P+ F F S+ K CA +E+ QLH+
Sbjct: 210 VVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHA 269
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
Q IK L DSF+ +TL++MY C + E
Sbjct: 270 QVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGRE 329
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLM 237
AI+ F RM ++PN + V++LTA + A + +K + + G E + ++
Sbjct: 330 AIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCII 389
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYG 264
D Y + + A+ +M N YG
Sbjct: 390 DTYGRAGRLDEAYKFISEMPIKPNAYG 416
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA--- 136
VF Q+ +++ GY A L + +M +GL+ D+ +F S+ +
Sbjct: 98 VFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLK 157
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS----------------SCWCL------- 173
D ++ K +H K G + + N LI+MY+ W +
Sbjct: 158 DGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMI 217
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
D +EA+ I+ + + V+PN T +++ A L ++H V ++
Sbjct: 218 DGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI 277
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWN 261
+ +TL+D Y KC +S + LF ++ + WN
Sbjct: 278 RDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWN 315
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 32/188 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIK 150
++V G + +H +A + M G+ P RF S ++ A + QLH ++
Sbjct: 10 TTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVR 69
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G ++ F+ + L +MYS C L + + A+
Sbjct: 70 LGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLS 129
Query: 183 FYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F M+ E V + +VL+A +D K +H CV ++GF V ++ L+D Y
Sbjct: 130 FRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYA 189
Query: 242 KCKFVSRA 249
K V A
Sbjct: 190 KSMDVESA 197
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 136/309 (44%), Gaps = 31/309 (10%)
Query: 12 RTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD 71
R +L S P+ + +++N+ + + A F ++C T+++ +Q+H+Q++ T+
Sbjct: 8 RFRSLFSRFQPIFLISHVHNDELIYSFHAFF-----QRCFTLQQARQLHSQLVLTTAHRL 62
Query: 72 P------CADY-------HVRLVFSQISNPTIYTC---NSIVRGYTNKNLHHEAFLFYHE 115
P A Y H R VF I +++ NSI+R + H A Y E
Sbjct: 63 PFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVE 122
Query: 116 MIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172
M G +PD F P + ++C+ + Y+ + +H A++ G + + N L+ MY
Sbjct: 123 MRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGK--- 179
Query: 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
L + ++A ++F M + ++ V+ +++ A RD RV K ++ G +
Sbjct: 180 LGRMEDARQLFDGMFVRSI----VSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVT 235
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCP 292
T+L+ ++ +C +LF M G A++ + + +I G
Sbjct: 236 WTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVV 295
Query: 293 KKAHKLFFF 301
K ++ + F
Sbjct: 296 KGGYEDYLF 304
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
GL +S +L++ ++ C D E +++F M ++ A L VL+ A ++
Sbjct: 228 GLQPNSVTWTSLLSSHARCGLYD---ETLELFKVMRTRGIEIGAEALAVVLSVCADMAEV 284
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K +H V + G+ ++ +K L+ Y K + + A +F+++ L WN
Sbjct: 285 DWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWN 338
>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
Length = 1027
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F+Q+ +I N+++ G+ N EA + +++ GL P F S+ C+
Sbjct: 582 RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGS 641
Query: 137 -DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + KQ+H +K G L D+ L +L +Y L+
Sbjct: 642 LNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTA 701
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
D ++ F+RM NV+ + T +VL A + K +H + +SG
Sbjct: 702 IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 761
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
F S+ + L+D Y KC V +++ F ++ + PWN+
Sbjct: 762 FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNS 803
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H + ++ P+ N+++ G+ L Y +M GL P R F S+ + A
Sbjct: 277 HATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAA 336
Query: 137 DI--YVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------ 175
++ +VE +Q+H+ A+ GL ++ F+ ++LIN+Y+ C C
Sbjct: 337 NMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNA 396
Query: 176 ----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KC 220
P+EAI++F M ++ + T V++L A K+VH C
Sbjct: 397 MLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNC 456
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+D S F ++ L D Y K + A LF L P+ + W
Sbjct: 457 MDISLFVANATL-----DMYSKYGAIGDAKALF--SLIPYKDSISW 495
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ +FS I + N++ G EA M + G+ PD F + +C++
Sbjct: 480 AKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN 539
Query: 138 IYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
I KQ+H AIK+G+ S+ + ++LI++YS ++
Sbjct: 540 IRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINAL 599
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG- 225
DEAI++F ++ + +KP++VT ++L+ + + + K+VH +SG
Sbjct: 600 IAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGV 659
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
+ L +L Y K K + A L +M LF W
Sbjct: 660 LYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWT 700
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I N+++ G+ L EA + M+ L D F F S+ +C +
Sbjct: 382 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 441
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
Y+ KQ+H IK + F+ N ++MYS +
Sbjct: 442 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 501
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ +EA+ + RM + + P+ V+ + A + R T K++H + G S+
Sbjct: 502 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSN 561
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y K V + +F ++
Sbjct: 562 HAVGSSLIDLYSKHGDVESSRKIFAQV 588
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 47/195 (24%)
Query: 57 KQIHAQMLRTSLFFDPC------ADYHVRLVFSQISNP---------TIYTCNSIVRGYT 101
KQ+H L++ + +D A +++ + +N ++ +I+ GY
Sbjct: 648 KQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYA 707
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSF 158
+ + + M + D F S+ K+C+D+ K++H K G S
Sbjct: 708 QNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYET 767
Query: 159 LHNTLINMYSSCWCL-----------------------------DQPDEAIKIFYRMEIE 189
+ LI+MYS C + DEA+ +F +ME
Sbjct: 768 ATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEEL 827
Query: 190 NVKPNAVTLVNVLTA 204
+KP+ VT + VL A
Sbjct: 828 QIKPDEVTFLGVLIA 842
>gi|302801049|ref|XP_002982281.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
gi|300149873|gb|EFJ16526.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
Length = 515
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 51/237 (21%)
Query: 122 IPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--- 175
+P + ++C A++ K +H+ I+ GL D + +L+NMY+ C + +
Sbjct: 1 MPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARK 59
Query: 176 ------------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
P EA+ +F M+ E V P+ +T + VL A A DL
Sbjct: 60 VFERINNRSRILWNSMITAYQERDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADL 119
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNNYGQWA 267
+ +H+ + +SGF + V + T L + Y KC + A +F M+F WNN
Sbjct: 120 ENGRTIHRRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNM---- 175
Query: 268 MSATVGPQGLVGRHST----AHQISGPCPKKAHKLFFFSMLKKVHVPGVLI---QVH 317
++A V QG G + A Q+ G P KA F S+L P L+ Q+H
Sbjct: 176 IAAYV--QGRDGEGAISLCWAMQLEGMRPDKAT---FASLLNACSDPNRLVDGRQIH 227
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 115/262 (43%), Gaps = 53/262 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSL-----------FFDPCADY-HVRLVFSQISNPTIY 91
LE C ++ ELK +HA ++ + L + C R VF +I+N +
Sbjct: 11 LEACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFERINNRSRI 70
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQA 148
NS++ Y ++ HEA + EM +G+ PDR F ++ +C AD+ + +H +
Sbjct: 71 LWNSMITAYQERD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHRRI 129
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAI 180
+ G A+D + L NMY+ C L + + AI
Sbjct: 130 VDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAI 189
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE------LKT 234
+ + M++E ++P+ T ++L A + L +++H + ++ F + + L T
Sbjct: 190 SLCWAMQLEGMRPDKATFASLLNACSDPNRLVDGRQIHSEIFDNIFSNSQQHHRDLFLWT 249
Query: 235 TLMDAYCKCKFVSRAWDLFVKM 256
+++ AY + +A +L+ +M
Sbjct: 250 SMITAYEQHGEYRKALELYEQM 271
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 66 TSLF--FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
T+LF + C R VF + + + N+++ Y A M ++G+
Sbjct: 142 TALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMR 201
Query: 123 PDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLAS------DSFLHNTLINMYSSCWCL 173
PD+ F SL +C+D + +Q+HS+ ++ D FL ++I Y
Sbjct: 202 PDKATFASLLNACSDPNRLVDGRQIHSEIFDNIFSNSQQHHRDLFLWTSMITAYEQ---H 258
Query: 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
+ +A++++ +M V+ + VT ++VL A A DLR + +H V G + V +
Sbjct: 259 GEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVA 318
Query: 234 TTLMDAYCKCKFVSRAWDLFVK 255
+++ Y KC A +F K
Sbjct: 319 NSIVFMYGKCGSFDEASIVFEK 340
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + + +++ Y+ L+ +A F M+ +G+ P+ F + S+ ++C ++
Sbjct: 22 VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFN 81
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
+QLH IK GL SD F+ + LI++YS L+
Sbjct: 82 LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQ 141
Query: 177 ----DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
DEA+++F RM+ TL +VL A L ++VH V + + L
Sbjct: 142 NSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVH--VHVLKYDQDLIL 199
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKML 257
L+D YCKC + A +FV+M+
Sbjct: 200 NNALLDMYCKCGSLEDANAVFVRMV 224
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 46/202 (22%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTC 93
L C + L+Q+H +++ L D D + R VF ++ +
Sbjct: 73 LRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVW 132
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIK 150
+SI+ G+ + EA + M G + + S+ ++C A + + +Q+H +K
Sbjct: 133 SSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK 192
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
+ D L+N L++MY C L+ + EA+K+
Sbjct: 193 YD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKL 250
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F M++ +KPN VT+V VL A
Sbjct: 251 FESMKVLGIKPNYVTIVGVLFA 272
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 149 IKFGL---ASDSFLH---------NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+KFGL A D F T+I+ YS+ D+A++ M E V+PN
Sbjct: 11 VKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAA---KLNDKALEFLVLMLREGVRPNMF 67
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T +VL A L ++++H C+ + G S V +++ L+D Y + + A +F +M
Sbjct: 68 TYSSVLRA---CDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEM 124
Query: 257 L 257
+
Sbjct: 125 V 125
>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
Length = 1037
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R +F+Q+ +I N+++ G+ N EA + +++ GL P F S+ C+
Sbjct: 592 RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGS 651
Query: 137 -DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + KQ+H +K G L D+ L +L +Y L+
Sbjct: 652 LNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTA 711
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
D ++ F+RM NV+ + T +VL A + K +H + +SG
Sbjct: 712 IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 771
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
F S+ + L+D Y KC V +++ F ++ + PWN+
Sbjct: 772 FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNS 813
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H + ++ P+ N+++ G+ L Y +M GL P R F S+ + A
Sbjct: 287 HATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAA 346
Query: 137 DI--YVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------ 175
++ +VE +Q+H+ A+ GL ++ F+ ++LIN+Y+ C C
Sbjct: 347 NMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNA 406
Query: 176 ----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KC 220
P+EAI++F M ++ + T V++L A K+VH C
Sbjct: 407 MLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNC 466
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+D S F ++ L D Y K + A LF L P+ + W
Sbjct: 467 MDISLFVANATL-----DMYSKYGAIGDAKALFS--LIPYKDSISW 505
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 37/221 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
+ +FS I + N++ G EA M + G+ PD F + +C++
Sbjct: 490 AKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN 549
Query: 138 IYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
I KQ+H AIK+G+ S+ + ++LI++YS ++
Sbjct: 550 IRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINAL 609
Query: 177 ----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG- 225
DEAI++F ++ + +KP++VT ++L+ + + + K+VH +SG
Sbjct: 610 IAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGV 669
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWN 261
+ L +L Y K K + A L +M LF W
Sbjct: 670 LYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWT 710
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF I N+++ G+ L EA + M+ L D F F S+ +C +
Sbjct: 392 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 451
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
Y+ KQ+H IK + F+ N ++MYS +
Sbjct: 452 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 511
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ +EA+ + RM + + P+ V+ + A + R T K++H + G S+
Sbjct: 512 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSN 571
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y K V + +F ++
Sbjct: 572 HAVGSSLIDLYSKHGDVESSRKIFAQV 598
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 47/195 (24%)
Query: 57 KQIHAQMLRTSLFFDPC------ADYHVRLVFSQISNP---------TIYTCNSIVRGYT 101
KQ+H L++ + +D A +++ + +N ++ +I+ GY
Sbjct: 658 KQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYA 717
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSF 158
+ + + M + D F S+ K+C+D+ K++H K G S
Sbjct: 718 QNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYET 777
Query: 159 LHNTLINMYSSCWCL-----------------------------DQPDEAIKIFYRMEIE 189
+ LI+MYS C + DEA+ +F +ME
Sbjct: 778 ATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEEL 837
Query: 190 NVKPNAVTLVNVLTA 204
+KP+ VT + VL A
Sbjct: 838 QIKPDEVTFLGVLIA 852
>gi|357131027|ref|XP_003567145.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 487
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 48/263 (18%)
Query: 46 SLEKCSTMRELKQIHAQMLR----------TSLFFDPCADYH----VRLVFSQISNPTIY 91
++ C+++ L + +LR S FF C +F+ +S P ++
Sbjct: 26 AINTCTSVAALAPLRGAILREPALLRSTAVVSAFFLACGRLRHLDPALSLFASLSRPHVF 85
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKF 151
NSI+R + LF + G+ P+R+ FP L S + + + +HSQ K
Sbjct: 86 VFNSILRSLHPASGSSPLPLF-RRFLCLGVRPNRYTFPLLLTSLSSLCDLRAVHSQVTKS 144
Query: 152 GLASDSFLHNTLINMYSSC--------WCLDQ---PD------------------EAIKI 182
G A D + N L+ Y++C D+ PD +A+
Sbjct: 145 GFARDLHVRNALLARYAACDPDVAHAEQLFDEMALPDVVAWTTVITSYKNRGRSFQALAT 204
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F RM +V PN VT+V L A + + +H+ V++ G+ V L T L+D Y K
Sbjct: 205 FRRMLAASVAPNRVTMVAALGACGAHGAIESGTWIHEYVEKQGWDLDVVLGTALVDMYGK 264
Query: 243 CKFVSRAWDLFVKM----LFPWN 261
C V+ A LF +M ++ WN
Sbjct: 265 CGHVAEAARLFTEMVERNVYTWN 287
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 33/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H +F +++ P + +++ Y N+ +A + M+ + P+R + +C
Sbjct: 169 HAEQLFDEMALPDVVAWTTVITSYKNRGRSFQALATFRRMLAASVAPNRVTMVAALGACG 228
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-- 171
I +H K G D L L++MY C W
Sbjct: 229 AHGAIESGTWIHEYVEKQGWDLDVVLGTALVDMYGKCGHVAEAARLFTEMVERNVYTWNA 288
Query: 172 ------CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV--DE 223
A++ FYRME + V+P+AVTL+ L A A A + T +++ + E
Sbjct: 289 IIGALVLAQDSTRALQWFYRMEADGVQPDAVTLICALCACAHAGFVDTGRKIFNLIAQGE 348
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF V+ L+D + + A+ + M
Sbjct: 349 YGFQPGVKHFGCLVDLLSRSGHLDDAFTVVQTM 381
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 131/301 (43%), Gaps = 47/301 (15%)
Query: 3 APLPLHHQTRTPALSSDNSPL----INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQ 58
+P P T+ PA SD +PL + D I++N+ H ++S + +
Sbjct: 55 SPKPTSIHTK-PA--SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTK 111
Query: 59 IHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118
I R+ D C + R +F ++ + N+++ Y + + EA+ + M+
Sbjct: 112 ILMLYARSGCLDDLC---YARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLK 168
Query: 119 QGLIPDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSC----W 171
G+ PD F F S + C + KQ+HS+ I G D+F+ N LI+MY+ C
Sbjct: 169 IGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEES 228
Query: 172 CLDQPDE------------------------AIKIFYRME--IENVKPNAVTLVNVLTAR 205
CL DE A+ +F RM+ + ++P+ T +LT
Sbjct: 229 CLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLC 288
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
A R+ +++H + + ++ ++T L+ Y +C ++ A ++F +M + WN
Sbjct: 289 ANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWN 348
Query: 262 N 262
+
Sbjct: 349 S 349
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 116/282 (41%), Gaps = 50/282 (17%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPT 89
+L C +R KQ+H++++ D C D L VF ++
Sbjct: 181 ALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERN 240
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEM--IVQGLIPDRFMFPSLFKSCADIYVE---KQL 144
T NSI+ ++A + + M G+ PD+F F +L CA+ + +Q+
Sbjct: 241 QVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 300
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QP 176
H+ I+ + + + L++MYS C L+ +
Sbjct: 301 HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGET 360
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+++F +M++ +KP+ +L ++L++ D + + +H + + L+ L
Sbjct: 361 QEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVL 420
Query: 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGL 277
+D Y KC + AW ++ + + N W ++ A +GL
Sbjct: 421 VDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGL 462
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ I + N+++ GY+ EA + Y EM +G+ P+ F ++ +C+
Sbjct: 511 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 569
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMRELK---QIHA----QMLRTSLF--------FDPCADY-HVRLVFSQISNPTI 90
L+ CS + L+ Q+H+ +M++T +F + C + R VF +SN
Sbjct: 291 LKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 350
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
T SI+ + + EA + M + LI + S+ ++C + + K+LH+Q
Sbjct: 351 VTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQ 410
Query: 148 AIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQPDEA 179
IK + + ++ +TL+ +Y S C L EA
Sbjct: 411 IIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ M E V+PN T + L A A + L + +H ++ S+V + + L+
Sbjct: 471 LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHM 530
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC FVS A+ +F M P N W
Sbjct: 531 YAKCGFVSEAFRVFDSM--PEKNLVSW 555
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 118/285 (41%), Gaps = 62/285 (21%)
Query: 27 DNINNNNINS--QYQAHFCLVS--LEKCSTMRELKQIHAQMLRTSLFFDPCADY------ 76
+N+N ++ +S + + L++ L+ + MR +K+IHA L+ FD Y
Sbjct: 68 ENVNQDDSSSFDSERVDYALLAEWLQSSNGMRLIKRIHAMALKC---FDDQVIYFGNNLI 124
Query: 77 ----------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDR 125
+ R VF + T +++ GY L EAF + + + G+ +
Sbjct: 125 SSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNE 184
Query: 126 FMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182
MF L C A+ + +Q+H +K G+ + + ++L+ Y+ C + A++
Sbjct: 185 RMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC---GELTSALRA 240
Query: 183 FYRMEIENV-------------------------------KPNAVTLVNVLTARARARDL 211
F ME ++V PN T+ ++L A + + L
Sbjct: 241 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKAL 300
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R ++VH V + + V + T+LMD Y KC +S +F M
Sbjct: 301 RFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 114/289 (39%), Gaps = 84/289 (29%)
Query: 56 LKQIHAQMLRTSL--------------FFDPCAD---YHVRLVFSQISNPTIYTCNSIVR 98
L+ IHAQM++T L P D Y + VF I P + N++ R
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAIS-VFETIQEPNLLIWNTMFR 61
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---------------------- 136
G+ + A Y MI GL+P+ + FP L KSCA
Sbjct: 62 GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 137 DIYVEKQLHSQAIKFGLASDS------------FLHNTLINMYSS--------------- 169
D+YV L S ++ G D+ + LI Y+S
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181
Query: 170 -----CWC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
W EA+++F M NV+P+ T+V+V++A A++ + ++
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
VH +D+ GF S++++ L+D Y KC V A LF K + WN
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 290
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 33/210 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F +I + + N+++ GY + EA + EM+ + PD S+ +C A
Sbjct: 176 MFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 235
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+HS G S+ + N LI++Y C ++
Sbjct: 236 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 295
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +++ G
Sbjct: 296 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVA 355
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ +T+L+D Y KC + A +F +L
Sbjct: 356 NASSHRTSLIDMYAKCGDIEAAQQVFDSIL 385
>gi|302757275|ref|XP_002962061.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
gi|300170720|gb|EFJ37321.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
Length = 847
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 119/280 (42%), Gaps = 61/280 (21%)
Query: 44 LVSLEKCSTMRELKQ---IHAQMLRTSLFFDPCAD-------------YHVRLVFSQISN 87
+ +++ CS++ L+Q +H+++L +S+ D + R +FS +
Sbjct: 211 VAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSMKV 270
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA------DIYVE 141
+ T ++IV Y H A + EM++ G+ P++ F SL SC+ D+
Sbjct: 271 KNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCSHAGLIKDLARG 330
Query: 142 KQLHSQAIK-FGLASDSFLHNTLINMYSSC---------------------------WCL 173
+++H++ +K A D + L+NMY C + L
Sbjct: 331 RKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAMLVTYSL 390
Query: 174 DQPD-EAIKIFYRM--EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW--- 227
+Q EA++ F M E E VKP+A+T V+ A DL +H + +S W
Sbjct: 391 NQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIHSRISQS--WPSN 448
Query: 228 -SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ V L + L+ Y C+ ++ A + +M P N W
Sbjct: 449 QTDVVLGSALIKMYGNCRRLADAAQVLDQM--PRTNVISW 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 39/217 (17%)
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
Q+ +P + +++ Y EA L + +M +QGL PDRF F + +C+ I +Q
Sbjct: 166 QVLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRFAFVAAIDACSSIPSLEQ 225
Query: 144 ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
LHS+ + + D + N L+N Y+ + +
Sbjct: 226 GTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQ 285
Query: 177 ----DEAIKIFYRMEIENVKPNAVTLVNVLTARARA---RDLRTVKRVH-KCVDESGFWS 228
+ A+++F M ++ V PN VT V++L + + A +DL +++H + + +
Sbjct: 286 NGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCSHAGLIKDLARGRKIHAEILKSTAAAG 345
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V + T L++ Y +C VS A +F +M + WN
Sbjct: 346 DVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWN 382
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 37/209 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
V Q+ + + S++ + A Y M + G PD ++ K+ A+++
Sbjct: 474 VLDQMPRTNVISWTSMILACEQNEDNEAAIRVYRAMQLHGHKPDPVTMVTVIKAAANLHD 533
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYS----------------------------- 168
K + H+QA FG A+ + + N L+ +Y
Sbjct: 534 LKRGIEFHAQAAAFGFATSTVVGNALVTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSM 593
Query: 169 -SCWCLDQ-PDEAIKIFYRMEIENVKPNAVTLVNVLTARAR--ARDLRTVKRVHKCVDES 224
S W + P++A+ F RM P+ T VN+L A A ++ L+ VK +H
Sbjct: 594 LSAWNQNGLPNQALGTFQRMLHHGRHPDKTTFVNILNACAGDPSKLLQGVK-IHALAAAC 652
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
G S +++ TL+ Y +C +SRA +F
Sbjct: 653 GLDSDIDVANTLLHMYSRCGNLSRARKVF 681
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 49/250 (19%)
Query: 57 KQIHAQMLRTSL-------------FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTN 102
++IHA++L+++ + C + VF ++ + I + N+++ Y+
Sbjct: 331 RKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAMLVTYSL 390
Query: 103 KNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKF--GLAS 155
EA F+ M+++G + PD F S +C D+ ++HS+ + +
Sbjct: 391 NQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIHSRISQSWPSNQT 450
Query: 156 DSFLHNTLINMYSSC-------WCLDQ---------------------PDEAIKIFYRME 187
D L + LI MY +C LDQ + AI+++ M+
Sbjct: 451 DVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMILACEQNEDNEAAIRVYRAMQ 510
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+ KP+ VT+V V+ A A DL+ H GF + + L+ Y +
Sbjct: 511 LHGHKPDPVTMVTVIKAAANLHDLKRGIEFHAQAAAFGFATSTVVGNALVTLYGTSGDLQ 570
Query: 248 RAWDLFVKML 257
A ++F ++L
Sbjct: 571 AAENVFKELL 580
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C H + VF +S ++T ++ +T+ L EA + EM V G+ D F
Sbjct: 39 MYGRCRSVHDAIAVFHTVSRKNVFTWTILIVAHTHNGLFFEAVELFREMDVHGVQSDEFT 98
Query: 128 FPSLFKSCADI---------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE 178
F ++ ++C+++ + ++H Q +K +I+ Y+ ++Q
Sbjct: 99 FSAILEACSNLGLAFLSLGKTIHSRIHQQGLKLTSNPTVICSTAMIDAYAQNGHIEQ--- 155
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTA 204
A +IF RM+++ + P+ + ++TA
Sbjct: 156 AAEIFERMQLQVLDPDLIAWTAMMTA 181
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD----IY 139
Q S + T NS++ + L ++A + M+ G PD+ F ++ +CA +
Sbjct: 581 QQSVEDVVTWNSMLSAWNQNGLPNQALGTFQRMLHHGRHPDKTTFVNILNACAGDPSKLL 640
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------ 175
++H+ A GL SD + NTL++MYS C L +
Sbjct: 641 QGVKIHALAAACGLDSDIDVANTLLHMYSRCGNLSRARKVFHALTQKNVVSWSAMAAACA 700
Query: 176 ----PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
D A++ F M ++PNAVT +++L+
Sbjct: 701 HNGDADGALQAFRGMLHGGIQPNAVTFISILSG 733
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF +I ++ T ++ GYT H EA + +M+ G+ PD + + +C D
Sbjct: 168 VFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGD 227
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + + + +SF+ TL+N+Y+ C +++
Sbjct: 228 LDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQG 287
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P E I+ F +M EN+KP+ ++V L++ A L + +D F ++
Sbjct: 288 YASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTN 347
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + L+D Y KC ++R +++F +M
Sbjct: 348 LFMANALIDMYAKCGAMARGFEVFKEM 374
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 52/277 (18%)
Query: 51 STMRELKQIHAQM---------------LRTSLFFDPCADYHVRLVFSQISNPTIYTCNS 95
ST LKQ+H + L+ +LFF ++ L+FS P I+ N+
Sbjct: 24 STFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQT--HYSFLLFSHTQFPNIFLYNT 81
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFG 152
++ G+ N +L HE + + GL F FP + K+C K LHS +K G
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCG 141
Query: 153 LASDSFLHNTLINMYSSCWCLDQ--------PD--------------------EAIKIFY 184
D +L+++YS L+ P+ EAI +F
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFK 201
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+M V+P++ +V VL+A DL + + + K ++E + ++TTL++ Y KC
Sbjct: 202 KMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCG 261
Query: 245 FVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
+ +A +F M + W+ Q S + +G+
Sbjct: 262 KMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGI 298
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 53 MRELKQIHAQMLRTSL--FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
M E++ +RT+L + C R VF + I T +++++GY + + E
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEG 297
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI----KFGLASDSFLHNTLIN 165
F+ +M+ + L PD+F SCA + L I + ++ F+ N LI+
Sbjct: 298 IEFFLQMLQENLKPDQFSIVGFLSSCASLGA-LDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 166 MYSSCWCLDQPDEAIK 181
MY+ C + + E K
Sbjct: 357 MYAKCGAMARGFEVFK 372
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIP--DRFMFPSLFKSCAD---IYVEKQLHSQA 148
N ++RG+T H A LFY +M P D P + KSCA + + + +H A
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTA 167
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL-DQPDE---------------------------AI 180
GLASD ++ + LI MYS L D D A+
Sbjct: 168 RATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAV 227
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++F M + +PN TL L+ A DL + ++H + G V + TL+ Y
Sbjct: 228 RLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMY 287
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQW 266
KC+ + AW LF L P ++ W
Sbjct: 288 AKCRCLDDAWRLF--ELLPRDDLVTW 311
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 116/280 (41%), Gaps = 47/280 (16%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTI 90
L +L + +++ K++H ++R + D C D R ++ +
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV 409
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
++++ GY + +A + ++ Q + P+ S+ +CA I + +++H
Sbjct: 410 VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGY 469
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
++ ++ + L++MY+ C LD +P EA
Sbjct: 470 VLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEA 529
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F +M +E +K N VT+ + L+A A + K +H + + + + ++ L+D
Sbjct: 530 LDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDM 589
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278
Y KC + A +F M P N W ++ + G GLV
Sbjct: 590 YAKCGNMELALRVFEFM--PDKNEVSWNSIISAYGAHGLV 627
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132
C D RL F + + T N ++ G L EA + +M+ G PD SL
Sbjct: 292 CLDDAWRL-FELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLL 350
Query: 133 KSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSC------------------- 170
+ D+ KQ +H I+ + D+FL + L+++Y C
Sbjct: 351 PALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVV 410
Query: 171 --------WCLDQPDE-AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+ L+ E A+++F + + +KPNAVT+ +VL A A L + +H V
Sbjct: 411 IGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYV 470
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +++ LMD Y KC + + +F KM
Sbjct: 471 LRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKM 505
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 33/219 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+FS++S T NS++ ++ EA + +M ++G+ + S +CA
Sbjct: 501 IFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPA 560
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------QPD------------ 177
IY K++H IK + +D F + LI+MY+ C ++ PD
Sbjct: 561 IYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISA 620
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS- 228
E++ +RM+ E KP+ VT + +++A A A + ++ +C+ + +
Sbjct: 621 YGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAP 680
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
+E ++D Y + + +A M F + G W
Sbjct: 681 RMEHFACMVDLYSRSGRLDKAIQFIADMPFK-PDAGIWG 718
>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 749
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + T ++V G+ H+A L EM G+ P+ + SL S A D
Sbjct: 217 VFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPED 276
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------------------- 171
I KQ+H +K GL D F+ + L+ MYS C
Sbjct: 277 IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISG 336
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
CL + EA + F M + T +VL A + L ++VH + + G+ S
Sbjct: 337 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSV 396
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
V+++ +L+ Y + + + +F+ M P WN+
Sbjct: 397 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNS 433
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 35/237 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F Q+ T T N+++ G+ A + M G+ P S+ +C D
Sbjct: 116 LFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLED 175
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
LHS + G + + L++MY+ C L
Sbjct: 176 AAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAG 235
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+P +A+ + ME V PN +T ++L++ A D+ K+VH V + G
Sbjct: 236 FVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 295
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+ + L+ Y KC + FVK+ + Q + ++ + +GR A Q
Sbjct: 296 QFVLSALVTMYSKCGILEN----FVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQ 348
>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
Length = 643
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 39/224 (17%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYH--EMIVQGLIPDRFMFPSLFKS 134
R VF I+ T+ + N+++ Y + +A LF+ EM + P+ F +L +
Sbjct: 266 ARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVA 325
Query: 135 CAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
CA + +++H++ GL S + LINMYS C L
Sbjct: 326 CAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSW 385
Query: 174 ----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
EA+ + +ME+E +KP+ T ++VL A + + L K +H +
Sbjct: 386 NVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAA 445
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
SG + T L++ Y KC + +A ++F+ M L WN+
Sbjct: 446 SGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNS 489
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 53/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C++ R+L KQ ++ R D C R VF +I I
Sbjct: 19 LRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNI 78
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
++ ++ Y + EA + E+ +G+ D S K+CA D+ + +H+
Sbjct: 79 FSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIHAS 138
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A G S+ + L++MY C L++ +EA
Sbjct: 139 ARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEA 198
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++++ M E +KP+A T V+VL + T R+H V ESGF S+ L L+
Sbjct: 199 VRLYRLMCFEGIKPDATTFVSVLDGWKGEGEHGT--RIHDQVLESGFGSNTTLANALVSM 256
Query: 240 YCKCKFVSRAWDLF----VKMLFPWN 261
Y V A +F K + WN
Sbjct: 257 YGSGGRVDDARYVFDGIAEKTVVSWN 282
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 36/221 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC- 135
+ VF+ + + N+++ Y EA Y M +G+ PD F S+
Sbjct: 166 EAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWK 225
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ ++H Q ++ G S++ L N L++MY S +D
Sbjct: 226 GEGEHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAML 285
Query: 177 ---------DEAIKIFYRMEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+A+ +F++M+ V+PN+VT VN+L A A L +++H V
Sbjct: 286 TAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASL 345
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
G S + + L++ Y +C + A +F K L WN
Sbjct: 346 GLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWN 386
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 39/204 (19%)
Query: 91 YTCNSIVRGYTNKNL---HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI----YVEKQ 143
+ N+++R + L A F+ M+ ++P++F FP L K+CA + V Q
Sbjct: 94 FLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQ 153
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD---------------- 177
H+ A+KFG A+D ++ NTLI+MY SC+ D+ D
Sbjct: 154 AHAAALKFGFATDQYVSNTLIHMY-SCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVR 212
Query: 178 -----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+A+ +F M+ V+P+ VT++ VL A A L + V + V+ G V L
Sbjct: 213 GGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTL 272
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM 256
L+DA KC V A +F M
Sbjct: 273 CNALIDALAKCGDVDGAVAVFQGM 296
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 54/221 (24%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ ++ T ++++ GY L +A + EM G+ PD + + AD+
Sbjct: 189 RNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADL 248
Query: 139 -----------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------- 174
+VE++ G+ L N LI+ + C +D
Sbjct: 249 GALELARWVGRFVERE--------GIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERT 300
Query: 175 ---------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+ EA+ +F M+ V+P+ V + VLTA + A V +
Sbjct: 301 VVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHA---GMVDEGYG 357
Query: 220 CVD----ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
D E G +E ++D + + V RA + M
Sbjct: 358 YFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTM 398
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 35/230 (15%)
Query: 49 KCSTMRELKQIHAQMLR----------------TSLFFDPCADYHVRLVFSQISNPTIYT 92
+C +M EL +IH ++ ++L DY + + S++S+P Y
Sbjct: 17 QCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFL-SKLSDPPNYG 75
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
N ++RG++N ++ Y +M+ GL+PD +P L KS + + K LH +
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 135
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
K GL D F+ NTLI+MY S DQ A K+F M +N+ VT ++L A A++
Sbjct: 136 KSGLEWDLFICNTLIHMYGS--FRDQA-SARKLFDEMPHKNL----VTWNSILDAYAKSG 188
Query: 210 DLRTVKRVHKCVDESGF--WSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
D+ + + V + E WS +++D Y K ++A ++F +M+
Sbjct: 189 DVVSARLVFDEMSERDVVTWS------SMIDGYVKRGEYNKALEIFDQMM 232
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 46/244 (18%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA 136
RLVF ++S + T +S++ GY + +++A + +M+ G + S+ +CA
Sbjct: 193 ARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACA 252
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ K +H + L L +LI+MY+ C +
Sbjct: 253 HLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMW 312
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
E++++F++M + P+ +T + +L A + ++ K + E
Sbjct: 313 NAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKE 372
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM------------LFPWNNYGQWAMSAT 271
SG E ++D + V A D +M L N+G ++ T
Sbjct: 373 SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAET 432
Query: 272 VGPQ 275
VG +
Sbjct: 433 VGKK 436
>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
Length = 749
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + T ++V G+ H+A L EM G+ P+ + SL S A D
Sbjct: 217 VFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPED 276
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-------------------------- 171
I KQ+H +K GL D F+ + L+ MYS C
Sbjct: 277 IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISG 336
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
CL + EA + F M + T +VL A + L ++VH + + G+ S
Sbjct: 337 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSV 396
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
V+++ +L+ Y + + + +F+ M P WN+
Sbjct: 397 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNS 433
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 35/237 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F Q+ T T N+++ G+ A + M G+ P S+ +C D
Sbjct: 116 LFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLED 175
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
LHS + G + + L++MY+ C L
Sbjct: 176 AAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAG 235
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+P +A+ + ME V PN +T ++L++ A D+ K+VH V + G
Sbjct: 236 FVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 295
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+ + L+ Y KC + FVK+ + Q + ++ + +GR A Q
Sbjct: 296 QFVLSALVTMYSKCGILED----FVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQ 348
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 51/226 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
V L+ C+++ EL KQIHA + + L + P D++++ F +I P
Sbjct: 290 VVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREP 349
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSC---ADIYVEKQL 144
+ ++I+ GY + EA + + + I + F + S+F++C AD + Q+
Sbjct: 350 NDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQV 409
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD----------------- 177
H+ AIK L + + LI MYS C CLD PD
Sbjct: 410 HADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNA 469
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EA+++F +M +KPN+VT + VLTA + A V++ C+D
Sbjct: 470 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHA---GLVEQGKHCLD 512
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 52/307 (16%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+QIHA ++R L + + + + VF Q++ C ++ GYT
Sbjct: 204 RQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQA 263
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
+A + +++ +G+ D F+F + K+CA ++ + KQ+H+ K GL S+ +
Sbjct: 264 GRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVG 323
Query: 161 NTLINMYSSC---------------------------WC-LDQPDEAIKIFYRMEIENVK 192
L++ Y C +C + Q +EA+K F + +N
Sbjct: 324 TPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAS 383
Query: 193 P-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
N+ T ++ A + D +VH + ++ L+ Y KC + A +
Sbjct: 384 ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANE 443
Query: 252 LFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG---PCPKKAHKLFFFSMLKKVH 308
+F M +N A +A + G S A ++ C K + + F ++L
Sbjct: 444 VFESM----DNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACS 499
Query: 309 VPGVLIQ 315
G++ Q
Sbjct: 500 HAGLVEQ 506
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 32/178 (17%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFS 83
++ D I + I SQY + KC + + + VF
Sbjct: 409 VHADAIKRSLIGSQYGESALITMYSKCGCLDDANE----------------------VFE 446
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
+ NP I + + G+ EA + +M+ G+ P+ F ++ +C+ + +Q
Sbjct: 447 SMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQ 506
Query: 144 ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
L + K+ +A ++ +I++Y+ L DEA+K M E P+A++
Sbjct: 507 GKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLL---DEALKFMKNMPFE---PDAMS 558
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 52/265 (19%)
Query: 52 TMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTIYTCNSIVR 98
T +L QIHA +LR L F C + LVF Q NP + NS+++
Sbjct: 21 TRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIK 80
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLAS 155
GY+ + L + +M +G+ PD F F L KSC+ I + K +H I G
Sbjct: 81 GYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFER 140
Query: 156 DSFLHNTLINMYSSCWCLD---------------------------------QPDEAIKI 182
S + +I++Y+SC ++ + EA+++
Sbjct: 141 FSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALEL 200
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYC 241
F M +P+ T+V +L AR + + +H + S + + +L+D YC
Sbjct: 201 FREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYC 260
Query: 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266
KC + AW +F +M P N W
Sbjct: 261 KCGILETAWRVFNEM--PQKNVVSW 283
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 51/250 (20%)
Query: 57 KQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
KQ+H +++ L D CA Y R VF+ + + + + NS++
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCA-YFAREVFNDMKHLDLISWNSMISSCAQ 364
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSL-----FKSCADIYV---EKQLHSQAIKFGLA 154
+L E+ + +++ +GL PD F S+ K+C + + KQ+H+ AIK G
Sbjct: 365 SSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 424
Query: 155 SDSFLHNTLINMYSSC--------------------W------CLDQ--PDEAIKIFYRM 186
SD +++ +++MY C W C+D D+A++I++RM
Sbjct: 425 SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 484
Query: 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246
V P+ T ++ A + L +++H V + S + T+L+D Y KC +
Sbjct: 485 RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNI 544
Query: 247 SRAWDLFVKM 256
A+ LF KM
Sbjct: 545 EDAYRLFKKM 554
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 38/213 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
RL+F + + N +++GY L EAF + E GL PD F + C
Sbjct: 238 RLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWA 297
Query: 136 --ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC-------------LD------ 174
D+ + KQ+H A+K GL SD + N+L+NMYS C LD
Sbjct: 298 GTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNS 357
Query: 175 ---------QPDEAIKIFYRMEIENVKPNAVTLVNV-LTARARARD----LRTVKRVHKC 220
+E++ +F + E +KP+ TL ++ L A+A L K++H
Sbjct: 358 MISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAH 417
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
++GF S + + + ++D Y KC + A +F
Sbjct: 418 AIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVF 450
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 30/226 (13%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCA---------------DYHVRLVFSQISNPTIYTC 93
+C++M L+Q+HA ++++ L DP A Y RLV P +
Sbjct: 42 RCASMAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVSYAERLVRHH-PRPNSFMW 100
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
N+++R ++ A + +M+ P+R PSL + A + LH A+K
Sbjct: 101 NTVIRALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALK 160
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
GLA D+++ N I MY+SC + DEA+ +F + + +AV + + A ARA
Sbjct: 161 LGLAGDAYVRNATIAMYASC---ARADEALALFGQCP----EFDAVACNSAIVALARAGR 213
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + V + E V + ++ AY + A LF M
Sbjct: 214 VDEARAVFDGMPE----RTVATWSAMVSAYARAARCGEALALFSAM 255
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF + T+ T +++V Y EA + M G+ P+ + S+ CA
Sbjct: 216 EARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCA 275
Query: 137 DIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------- 174
+ Q +H+ + G+A ++ + L++MY C +D
Sbjct: 276 SLGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSS 335
Query: 175 ------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q EA+ +F + + P+ VT + VLTA
Sbjct: 336 WNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTA 377
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 114/265 (43%), Gaps = 42/265 (15%)
Query: 49 KCSTMRELKQIHAQMLRT-SLFFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLH 106
+C M+ HA ++ + + C + RL+F QI P + + N+++ GYT N
Sbjct: 230 QCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNET 289
Query: 107 HEAFLFYHEMIVQG----------LIPDRFMFPSL-FKSCADIYVEK------------- 142
+ + E++V G LIP F F L C + K
Sbjct: 290 ESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTAL 349
Query: 143 --------QLHSQAIKFGLASDSFLH--NTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192
++ S + F +S+ L N +I+ Y+ ++AI +F M+ V+
Sbjct: 350 TTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGL---TEKAISLFQEMQKCEVR 406
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
PN VT+ ++L+A A+ L K VH ++ F S++ + T L+D Y KC ++ A L
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRL 466
Query: 253 FVKMLFPWNNYGQW-AMSATVGPQG 276
F M P N W AM + G G
Sbjct: 467 FSMM--PEKNAVTWNAMISGYGLHG 489
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 48/261 (18%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPC-------------ADYHVRLVFSQISNPTI 90
L + + ST+ +L Q HAQ++ L D A L+FS I NP +
Sbjct: 14 LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDL 73
Query: 91 YTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKS--------------- 134
+ N ++R ++ N A L+ H L PD F + +
Sbjct: 74 FLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSI 133
Query: 135 ----CADIYVEKQLHSQAIKFG------------LASDSFLHNTLINMYSSCWCLDQPDE 178
+D++V + + KF L D+ L NT+++ C D E
Sbjct: 134 VAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFD---E 190
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
AI IF M + ++ T+ VL A +DL + + GF SH + T L
Sbjct: 191 AILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLAC 250
Query: 239 AYCKCKFVSRAWDLFVKMLFP 259
Y KC + A LF ++ P
Sbjct: 251 LYSKCGEIETARLLFGQIGQP 271
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 121/306 (39%), Gaps = 96/306 (31%)
Query: 47 LEKCSTMRELKQIHAQMLRTS--------------LFFDPCAD----YHVRLVFSQISNP 88
++ C + +LKQIHA +L + LFF +D + +F I P
Sbjct: 5 IQHCKNINQLKQIHALILTSPNLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYIKKP 64
Query: 89 TIYTCNSIVRGYTNK-NLHHE------AFLFYHEMIVQGLIPDRFMFPSLFKSCAD---I 138
+ N ++R Y +K N+ ++ A + Y +M+ + PD FP L K C I
Sbjct: 65 NLPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISPDCLTFPFLLKECTRNVAI 124
Query: 139 YVEKQLHSQAIKFGLASDSFLH-------------------------------NTLINMY 167
Y + +H AIK GL SD F+ N++I Y
Sbjct: 125 YGGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLFDEMSNRDVVSWNSMIIGY 184
Query: 168 SSCWCLDQ-----------------------------PDEAIKIFYRME-------IEN- 190
LDQ P EA++ F+ M+ I N
Sbjct: 185 LRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINNK 244
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250
V+P+ +T+ +VL+A A + K VH + SG + + T L+D Y KC + RA+
Sbjct: 245 VRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQRAY 304
Query: 251 DLFVKM 256
++F +M
Sbjct: 305 EVFREM 310
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 39/168 (23%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEM--------IVQGLIPDRFMFPSLFKSCADI 138
N + T NSI+ G+ EA F+HEM I + PD+ S+ +CA +
Sbjct: 203 NRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINNKVRPDKITIASVLSACAHL 262
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
K +HS + GL D + L++MY C CL +
Sbjct: 263 GAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMI 322
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
EA +F ME VKPN VT V +L+A A + + T +
Sbjct: 323 SVFALNGFGKEAFDMFNEMEAGGVKPNLVTFVGLLSACAHSGLVETGR 370
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 38/211 (18%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYVEK-Q 143
NP + N+I+ + + L Y M+ PD FPSL K+C D++
Sbjct: 10 NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69
Query: 144 LHSQAIKFGLASDSFLHNTLINMYS---------------------------SCWC-LDQ 175
H + I G +SDS++ +LIN YS C+ +
Sbjct: 70 FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
D A ++ M + ++P++VT++ +L+ +L ++ +H CV + GF S V L +
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSG---VLELVHLQCLHACVIQYGFGSDVALANS 186
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+++ YCKC V A LF M + WN+
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNS 217
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + + + +++ YT H AF Y+ M QG+ P L ++
Sbjct: 103 RKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLEL 162
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD----------- 177
+ LH+ I++G SD L N+++N+Y C +D D
Sbjct: 163 VHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGY 222
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
E +++ RM+ + ++P+ T ++++A A L K VH + +G
Sbjct: 223 AQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDS 282
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKML 257
++T+L+ Y KC V+ A+ +F M+
Sbjct: 283 HIETSLIGMYLKCGNVNSAFRIFEGMM 309
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + + NS+V GY E M G+ PD+ F SL + A
Sbjct: 203 LFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSK 262
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
+ V K +H ++ GL DS + +LI MY C W
Sbjct: 263 LGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISG 322
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D D A+ +F RM V P+ T+ +VL A A VH +
Sbjct: 323 LVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLD 382
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + +L+ Y KC + ++ +F +M + WN
Sbjct: 383 IPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWN 418
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 115/304 (37%), Gaps = 49/304 (16%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKC-STMRELKQIHAQMLRTSLFFDP------------ 72
L + + I Q LVS S + K +H +LR L D
Sbjct: 235 LIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLK 294
Query: 73 CADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C + + +F + + + + +++ G + A + M+ ++P S+
Sbjct: 295 CGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV 354
Query: 132 FKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------- 177
+CA++ + +H ++ + D N+L+ MY+ C L+Q
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414
Query: 178 -----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+A+ +F M +P+++T+V++L A A L K +H
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNF 474
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
V +S + + T L+D Y KC + A F +M P + W S+ + G G+
Sbjct: 475 VTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRM--PQQDLVSW--SSIIAGYGSHGK 530
Query: 281 HSTA 284
TA
Sbjct: 531 GETA 534
>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
Length = 566
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + T ++V G+ H+A L EM G+ P+ + SL S A D
Sbjct: 170 VFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPED 229
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--W------------------------ 171
I KQ+H +K GL D F+ + L+ MYS C W
Sbjct: 230 IDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISG 289
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
CL + EA + F M + T ++L A + L ++VH + + G+ S
Sbjct: 290 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSV 349
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
V+++ +L+ Y + + + +F+ M P WN+
Sbjct: 350 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNS 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 35/237 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
+F Q+ T T N+++ G+ A + M+ G+ P S+ +C +
Sbjct: 69 LFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLEN 128
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
LHS ++ G + + L++MY+ C L
Sbjct: 129 AGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTG 188
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+P +A+ + ME V PN +T ++L++ A D+ K+VH V + G
Sbjct: 189 FVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 248
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+ + L+ Y KC W+ FVK+ + Q + ++ + +GR A Q
Sbjct: 249 PFVLSALVTMYSKCGI----WEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQ 301
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 33/245 (13%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + + +++ Y+N NL+H+A F M+ +G+ P+ + + S+ ++C +
Sbjct: 71 RNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGL 130
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSS--------------------CWCL----- 173
+QLH +K GL SD F+ + LI+ YS W
Sbjct: 131 LNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGF 190
Query: 174 ---DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
DE + ++ RM+ + + TL +VL A L ++VH V + +
Sbjct: 191 AQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVH--VHVLKYDQDL 248
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG---RHSTAHQI 287
L L+D YCKC + A LF +M+ + M A + G + A +
Sbjct: 249 ILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKS 308
Query: 288 SGPCP 292
GP P
Sbjct: 309 KGPKP 313
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 38/177 (21%)
Query: 121 LIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-- 175
L D + L K C + + +H G +FL NTLINMY LD+
Sbjct: 12 LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71
Query: 176 ------PD--------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
PD +A+ M E V+PN T +VL A
Sbjct: 72 NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA---CD 128
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L ++++H + + G S V +++ L+D Y K A ++F +M L WN+
Sbjct: 129 GLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNS 185
>gi|255543188|ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548618|gb|EEF50109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 837
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
+SL+ C+ ++EL +QIH +++ L F+ CA + + VF IS P
Sbjct: 297 ISLKACAGLKELSFGRQIHGHIVKLGLESEVSVGTPLVDFYIKCASFELASKVFEGISEP 356
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ ++++ GY EA + + + F + S+F++C AD Q+H
Sbjct: 357 NDVSWSAMITGYCQIGEFEEALKIFESLRSNIENLNSFTYTSIFQACSALADFSTGTQVH 416
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD------------------ 177
+ AIK L + + +I MYS C +D PD
Sbjct: 417 ADAIKRSLIASQHGESAMITMYSRCGRLDYANLAFETIDGPDAVAWTAIVAGYAYQGNAT 476
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+K F+RM+ +PNA+T + VLTA
Sbjct: 477 EALKHFWRMQGSGARPNAITFIAVLTA 503
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 93/233 (39%), Gaps = 48/233 (20%)
Query: 57 KQIHAQMLRTSL-----FFDPCADYHVR--------LVFSQISNPTIYTCNSIVRGYTNK 103
KQIH+ +R+ L ++ +VR L + ++ ++ GYT
Sbjct: 211 KQIHSHSIRSGLGAGVSINTAISNMYVRCGWLDGAELFINNMAEKNAVAWTGLMVGYTQA 270
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
A + +M+ + + D ++F K+CA ++ +Q+H +K GL S+ +
Sbjct: 271 GKQKNALDLFAKMVCEDVELDEYVFSISLKACAGLKELSFGRQIHGHIVKLGLESEVSVG 330
Query: 161 NTLINMYSSC---------------------------WC-LDQPDEAIKIF--YRMEIEN 190
L++ Y C +C + + +EA+KIF R IEN
Sbjct: 331 TPLVDFYIKCASFELASKVFEGISEPNDVSWSAMITGYCQIGEFEEALKIFESLRSNIEN 390
Query: 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+ N+ T ++ A + D T +VH + + ++ ++ Y +C
Sbjct: 391 L--NSFTYTSIFQACSALADFSTGTQVHADAIKRSLIASQHGESAMITMYSRC 441
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 25 NLDNINNNNINSQYQAHFCLVSLEKCSTMRELK---QIHAQMLRTSLF------------ 69
N++N+N+ S +QA CS + + Q+HA ++ SL
Sbjct: 387 NIENLNSFTYTSIFQA---------CSALADFSTGTQVHADAIKRSLIASQHGESAMITM 437
Query: 70 FDPCA--DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C DY L F I P +IV GY + EA + M G P+
Sbjct: 438 YSRCGRLDY-ANLAFETIDGPDAVAWTAIVAGYAYQGNATEALKHFWRMQGSGARPNAIT 496
Query: 128 FPSLFKSC--ADIYVEKQ--LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
F ++ +C + + E + L + K+G+A ++ +I++YS L + E IF
Sbjct: 497 FIAVLTACSHSGLVAEGKQYLDLMSSKYGMAPTIDHYDCVIDIYSRAGYLQEALEG-GIF 555
Query: 184 YRMEIENVKPNAVTLVNVLTARA 206
N+ + LV TARA
Sbjct: 556 -----TNIALYQLHLVKAETARA 573
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 32/178 (17%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLI 164
EA F +M+ G+ + +LF+ C + + K +H + FL NT++
Sbjct: 73 EAREFLKQMVDAGISVSPDSYRNLFEICGNSKSLSDGKIIHELLRRTVEKPSVFLENTVL 132
Query: 165 NMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKPNAV 196
MY C L+ D+A+ +F M + PN+
Sbjct: 133 KMYCVCESLEDAYKVFDKMIERNLISWGTIISAYAEHGLLDKALSLFISMISLGINPNSS 192
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
+++L + L K++H SG + V + T + + Y +C ++ A +LF+
Sbjct: 193 IYIDLLRSLLNPSLLGIGKQIHSHSIRSGLGAGVSINTAISNMYVRCGWLDGA-ELFI 249
>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
Length = 566
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++ + T ++V G+ H+A L EM G+ P+ + SL S A D
Sbjct: 170 VFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPED 229
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--W------------------------ 171
I KQ+H +K GL D F+ + L+ MYS C W
Sbjct: 230 IDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISG 289
Query: 172 --CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
CL + EA + F M + T ++L A + L ++VH + + G+ S
Sbjct: 290 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSV 349
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
V+++ +L+ Y + + + +F+ M P WN+
Sbjct: 350 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNS 386
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 35/237 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
+F Q+ T T N+++ G+ A + M+ G+ P S+ +C +
Sbjct: 69 LFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLEN 128
Query: 140 --VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
LHS ++ G + + L++MY+ C L
Sbjct: 129 AGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTG 188
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+P +A+ + ME V PN +T ++L++ A D+ K+VH V + G
Sbjct: 189 FVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 248
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
+ + L+ Y KC W+ FVK+ + Q + ++ + +GR A Q
Sbjct: 249 PFVLSALVTMYSKCGI----WEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQ 301
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 48/257 (18%)
Query: 53 MRELKQIHAQMLRTSLFFDPCADYHV-------RLV------FSQISNPTIYTCNSIVRG 99
+R K+IH Q++ + ++ A V R++ F +++ + N+I+ G
Sbjct: 158 LRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISG 217
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASD 156
Y L A ++ +G PD S+ + ADI K +H+ I+ G
Sbjct: 218 YAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWL 277
Query: 157 SFLHNTLINMYSSC--------------------W------CLD--QPDEAIKIFYRMEI 188
+ L++MYS C W C++ P+EA +F +M
Sbjct: 278 VNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMD 337
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
E ++P VT++ VL A A + DL K VHK V++ S+V + +L+ Y KCK V
Sbjct: 338 EGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDF 397
Query: 249 AWDLFVKM----LFPWN 261
A +LF + L WN
Sbjct: 398 AANLFENLQNRTLVSWN 414
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 111/274 (40%), Gaps = 53/274 (19%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVR 98
++R K IHA ++R + C R++F + + T+ T NS++
Sbjct: 258 SLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIA 317
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLAS 155
G EA + + +M+ +GL P + +CAD + K +H L S
Sbjct: 318 GCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDS 377
Query: 156 DSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRME 187
+ + N+LI+MYS C +D + +EA+ F M+
Sbjct: 378 NVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQ 437
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
+N+KP++ T+V+V+ A A R K +H V V + T L+D Y KC +
Sbjct: 438 SQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIH 497
Query: 248 RAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
A LF M + WN +M G GL
Sbjct: 498 TARKLFNMMSERHVITWN-----SMIDAYGTHGL 526
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 113/273 (41%), Gaps = 54/273 (19%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRT-------------SLFFDPCADYHVRLVFSQISN 87
H V LE C++++EL QI +++ SLF + + VF I N
Sbjct: 45 HPTAVLLELCTSVKELHQIIPSIIKNGFYSEELFQTKLISLFCNYGSLTEAARVFEPIEN 104
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
+++++G+ + A LF+ M + P + F L C D+ K++
Sbjct: 105 KLEALYHTMLKGFAKNSSLDSALLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEI 164
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV------------- 191
H Q I G + + F ++++Y C + +A K+F RM ++
Sbjct: 165 HGQLITSGFSWNLFAMTAVVSLYCKCRVI---GDAYKMFDRMTERDLVCWNTIISGYAQN 221
Query: 192 ------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
+P++VT+V+VL A A R LR K +H V +GF V +
Sbjct: 222 GLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNIS 281
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
T L+D Y KC + A +F M + WN+
Sbjct: 282 TALVDMYSKCDSLGTARVIFDGMGSRTVVTWNS 314
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + N T+ + N+++ GY +EA F+ EM Q + PD F S+ + A++ +
Sbjct: 401 LFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAELSI 460
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+Q +H I+ L F+ L++MY+ C +
Sbjct: 461 PRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDA 520
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F M+ +KPN VT + VL+A
Sbjct: 521 YGTHGLGKEAVQLFVEMQKGTIKPNDVTFLCVLSA 555
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 55/252 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKN--LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
+F QI +P + T N ++R Y++ + + Y M+ + P+ + FP K+C
Sbjct: 79 LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF------------ 183
AD + + +H AI GL +D F+ L++MY C CL PD A IF
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACL--PDAA-HIFATMPARDLVAWN 195
Query: 184 ---------------------YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK-CV 221
+M++ ++PNA TLV +L A+ L VH C+
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255
Query: 222 ---------DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATV 272
+S V L T L+D Y KC + A +F M P N W SA +
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM--PARNEVTW--SALI 311
Query: 273 GPQGLVGRHSTA 284
G L R + A
Sbjct: 312 GGFVLCSRMTQA 323
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP----SLF 132
+ R VF + T ++++ G+ + +AFL + M+ QGL F+ P S
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC---FLSPTSIASAL 347
Query: 133 KSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------- 176
++CA + + +QLH+ K G+ +D N+L++MY+ +DQ
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407
Query: 177 ---------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+EA +F +M+ NV+P+A T+V+++ A + L+ + H V
Sbjct: 408 SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGR 280
G S + L+D Y KC + + +F M P + W M A G GL G+
Sbjct: 468 IIRGLASETSICNALIDMYAKCGRIDLSRQVFNMM--PSRDIVSWNTMIAGYGIHGL-GK 524
Query: 281 HSTA 284
+TA
Sbjct: 525 EATA 528
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D +N LI YSS D + ++ RM V PN T L A + D +
Sbjct: 87 DVRTYNDLIRAYSSSSPTAAAD-GLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGR 145
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSAT 271
+H+ +G + + + T L+D Y KC + A +F M L WN AM A
Sbjct: 146 AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN-----AMLAG 200
Query: 272 VGPQGLVGRHSTAHQIS 288
G+ H+ AH +S
Sbjct: 201 YAHHGMY-HHAVAHLLS 216
>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 39/220 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCAD 137
R +F ++ P S++ YT +++ +A F++ M + GL PD F F ++ +C +
Sbjct: 208 RRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGN 267
Query: 138 IYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKP 193
+ KQ +H++ I G + + + ++L++MY C +D E+ ++F RM ++N V
Sbjct: 268 LRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVD---ESQRVFDRMSVKNSVSW 324
Query: 194 NAV-----------TLVNVLTARARARDL----------------RTVKRVHKCVDESGF 226
+A+ +++ + A DL R K VH G
Sbjct: 325 SALLGGFCQNGDFESVIRIFREMGEADDLYSFGTVLRACAGLAAVRQGKEVHCQYVRRGG 384
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
W V +++ L+D Y KC + A +F KM L WN+
Sbjct: 385 WRDVIIESALVDLYAKCGCIDFAHRIFTKMTVRNLITWNS 424
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 46/245 (18%)
Query: 58 QIHAQMLRT-------------SLFFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
QIHA ++++ +L+F D+ R VF + + + S++ GY
Sbjct: 72 QIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFRDVISWTSMITGYVKG 131
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLH 160
+A + EM+ G+ P+ F ++ K+C D+ + K H + G S+ +
Sbjct: 132 EKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSNHVIG 191
Query: 161 NTLINMYSS--------------------CWCL--------DQPDEAIKIFYRMEIE-NV 191
+ LI++Y CW D D+A+ FY M+ + +
Sbjct: 192 SALIDLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKLGL 251
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P+ T VLTA R L+ K VH + SGF +V ++++L+D Y KC V +
Sbjct: 252 APDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQR 311
Query: 252 LFVKM 256
+F +M
Sbjct: 312 VFDRM 316
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 32/166 (19%)
Query: 126 FMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS------------- 169
F++ SL ++C + Q+H+ +K GL +D F+ N+L+ +Y
Sbjct: 52 FIYASLLQTCTKVVSFNHGLQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFD 111
Query: 170 --------CWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
W ++P +A+ +F+ M V PNA TL V+ A L
Sbjct: 112 GLYFRDVISWTSMITGYVKGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLML 171
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
K H + GF S+ + + L+D Y + + A LF ++L P
Sbjct: 172 GKCFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEP 217
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 43/239 (17%)
Query: 51 STMRELKQIHAQMLRTSLFFD---PCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
ST+ + KQIHA +++T P D+ L S N ++ YT +N
Sbjct: 54 STLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSA-------QWNFVITSYTKRNQPR 106
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSFLHNTLI 164
A Y ++ D FM PS+ K+C + + K++H +K GL D F+ N L+
Sbjct: 107 NALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALM 166
Query: 165 NMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVKPNAV 196
MY C C++ + D A+++ M V+P+ V
Sbjct: 167 LMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEV 226
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT--LMDAYCKCKFVSRAWDLF 253
+V+++ A ++R K +H V + H+ + TT L+D Y KC + A LF
Sbjct: 227 AMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLF 285
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 32/212 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F N + +++ Y N +AF + +M G+ P + SL CA
Sbjct: 311 EARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCA 370
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ + K +HS K + D L+ L++MY+ C ++
Sbjct: 371 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 430
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDES 224
+EA+ IF ME + VKPN +T + +L A + A + K++ K V
Sbjct: 431 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 490
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +E ++D + + A ++ M
Sbjct: 491 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM 522
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D + +++ Y+ C+DQ A +F +M V+P VT+V++L+ A A L K
Sbjct: 323 DVMIWTAMLSAYAQANCIDQ---AFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGK 379
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML-------------FPWNN 262
VH +D+ L T L+D Y KC ++ A LF++ + F +
Sbjct: 380 WVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHG 439
Query: 263 YGQWAMS--ATVGPQGL 277
YG+ A+ A + QG+
Sbjct: 440 YGEEALDIFAEMERQGV 456
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 52/261 (19%)
Query: 46 SLEKCSTMRE---LKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
SL+ CS++ QIH +++ L + A + R VF QI P
Sbjct: 276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPD 335
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-----IYVEKQL 144
+ N I+ G N EA + +M G IPD SL CA + Q+
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTKPMALSQGMQI 393
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC---------------------W------CL--DQ 175
HS IK+G +D + N+L+ MY+ C W CL +Q
Sbjct: 394 HSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQ 453
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P E +++F M + +P+ +T+ N+L L+ +VH ++G +K
Sbjct: 454 PVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNG 513
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + +A +F M
Sbjct: 514 LIDMYAKCGSLGQARRIFDSM 534
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 22/161 (13%)
Query: 50 CSTMRELKQ---IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTC 93
CS+ R L Q IH +L ++ +D + H+ R VF + + +
Sbjct: 77 CSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSY 136
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++ GY+ EA Y +M+ + L+PD+F F S+ K+CA D+ + KQLH+Q IK
Sbjct: 137 TSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIK 196
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+S N LI MY +Q +A ++FY + ++++
Sbjct: 197 LESSSHLIAQNALIAMYVR---FNQMSDASRVFYGIPMKDL 234
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 107/242 (44%), Gaps = 45/242 (18%)
Query: 57 KQIHAQMLR---TSLFFDPCADYHVRLVFSQISNPT----------IYTCNSIVRGYTNK 103
KQ+HAQ+++ +S A + + F+Q+S+ + + + +SI+ G++
Sbjct: 188 KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQL 247
Query: 104 NLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFL 159
EA EM+ G+ P+ ++F S K+C+ + Q+H IK LA ++
Sbjct: 248 GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIA 307
Query: 160 HNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENV 191
+L +MY+ C L+ DEA+ +F +M
Sbjct: 308 GCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGF 367
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P+A++L ++L A+ + L ++H + + GF + + + +L+ Y C + ++
Sbjct: 368 IPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFN 427
Query: 252 LF 253
LF
Sbjct: 428 LF 429
>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
Length = 663
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 53/259 (20%)
Query: 58 QIHAQMLRTS---------LFFDPCA---DYHVRLVFSQISNP-TIYTCNSIVRGYTNKN 104
Q+HA +L + L + CA + + + +Q+ P ++ N+++R Y+
Sbjct: 33 QLHALLLTSGHLHYDSPHLLLYSYCACGCPFDAQNLLAQMPQPASVSVSNTLLRSYSGLG 92
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHN 161
H +A Y +M D F K+CA + + + +H +A+ G SD+++ N
Sbjct: 93 FHRQALALYSQM----RHFDHLTFTFAAKACAGLRLRRHGRAVHGRALAAGFGSDAYVQN 148
Query: 162 TLINMYSSC--------------------W------CL--DQPDEAIKIFYRMEIENVKP 193
+++MY C W C+ + + A+++F M V
Sbjct: 149 AIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRGVCI 208
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ ++V+VL A A+ARDL T + VH+ G +V +K L+D Y KC + A
Sbjct: 209 DRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLEDA---- 264
Query: 254 VKMLFPWNNYGQWAMSATV 272
+ +F ++Y + +S TV
Sbjct: 265 -RRVFDEDSYDKDVVSWTV 282
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 36/238 (15%)
Query: 79 RLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA 136
R VF + S + + + ++ Y + +AF EM+V P+ L +CA
Sbjct: 265 RRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACA 324
Query: 137 DIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------- 173
+ K H+ I+ GL SD + L++ Y+ C +
Sbjct: 325 SLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMGVIDMVVEKGSRRTETWNAA 384
Query: 174 -------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
DQ +A+ +F RM E+V+P++ T+ +V+ A A + DL +H C+ G
Sbjct: 385 ISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNIHCCLLVRGC 444
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
++ T L+D Y K + AW+LF P + W + + G+ G TA
Sbjct: 445 LVSTDIATGLIDLYAKAGDLGVAWELF--QCLPEKDVVAW--TTVIAGYGMHGHAQTA 498
>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
Group]
Length = 1111
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 11/203 (5%)
Query: 68 LFFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
+ + C D R VF ++ + T NS++ GY EA M +G P
Sbjct: 194 VMYAKCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVV 253
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+ +L S A D+ V +L Q + G+A D +L++ + +D+ DEA++ F
Sbjct: 254 TWNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVH---MDRSDEALRCF 310
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
RM + V+PN +++ ++A A + L K +H + G ++V +L+D Y KC
Sbjct: 311 IRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKC 370
Query: 244 KFVSRAWDLFV----KMLFPWNN 262
+ AW +F K +F WN+
Sbjct: 371 GEIVAAWRIFSGIPDKDIFSWNS 393
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 34/213 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R VF + + ++++ Y + ++ + M+ +G++PDRF+ + ++CA
Sbjct: 101 AREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAY 160
Query: 137 --DIYVEKQLHSQAIK---FGLASDSFLHNTLINMYSSC----W---------CLD---- 174
D+ + + LHS AI+ G D + N+++ MY+ C W C D
Sbjct: 161 AEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVCRDLGTW 220
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+ +EA + M E +P VT ++++ AR DL + ++E
Sbjct: 221 NSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDVAMELLGQMEE 280
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
SG V T+L+ + A F++M
Sbjct: 281 SGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRM 313
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+FS I + I++ NS++ GY +A+ + +M G+ + + ++ Y+
Sbjct: 379 IFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISG----YI 434
Query: 141 EKQLHSQAIKF-------GLASDSFLHNTLI--NMYSSCWCLDQPDEAIKIFYRMEIENV 191
+A + G+ D+ N LI ++++ + D AI+IF +M+
Sbjct: 435 RNGDDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYY-----DRAIRIFRQMQALLR 489
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
+P+ +T+++++ A V+ +H C+ ++ L++AY K ++ A
Sbjct: 490 RPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACA 549
Query: 252 LF----VKMLFPWN 261
+F + + WN
Sbjct: 550 VFDMHSSRNIISWN 563
>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
Length = 1121
Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 109/268 (40%), Gaps = 61/268 (22%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV--------------------FS 83
L++C + +L K++HAQ+ + L D + R + F
Sbjct: 21 LKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFD 80
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYV 140
I++ I++ SI+ Y + LH +A +H+MI G+ PDR ++ L K C D+
Sbjct: 81 SIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVYARLLKECGRLGDLAQ 140
Query: 141 EKQLHSQAIKFGLASDS-------FLHNTLINMYSSCWCLDQPD---------------- 177
K+LH+Q + GL D FL N L+ MY C D+
Sbjct: 141 GKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTS 200
Query: 178 ------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A++ F++M V+P+ + + L + L +H+ + +
Sbjct: 201 ILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLEDGAGIHRQIQDKP 260
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
S +E+ L+ Y KC + A +LF
Sbjct: 261 LDSDLEIGNALVSMYGKCGRLDLAKELF 288
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 65/270 (24%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV--------------------FS 83
L++C + +L K++HAQ+ + L D + R + F
Sbjct: 129 LKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFD 188
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
I++ I++ SI+ Y + LH +A +H+MI G+ PDR +F + C + K+
Sbjct: 189 SIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCG---ILKR 245
Query: 144 L------HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR------------ 185
L H Q L SD + N L++MY C LD E R
Sbjct: 246 LEDGAGIHRQIQDKPLDSDLEIGNALVSMYGKCGRLDLAKELFDCLERRNVISWTILVSV 305
Query: 186 ----------------MEIENVKPNAV---TLVNVLTARARARDLRTVKRVHKCVDESGF 226
M +E +KP+ V TL+NV ++R + + H + G
Sbjct: 306 FAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWM--AHDYIVGGGL 363
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ T L+ + +C V +A ++F K+
Sbjct: 364 DREAVVATALLSMFARCGRVDKAREIFEKV 393
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 34/213 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F+++ + ++ Y + + M+ +GL P +L AD
Sbjct: 589 REIFTRVKTFDVILWTGMLTVYCQLGRTKQVMEHFRSMLHEGLKPTGVTLVNLITCVADS 648
Query: 139 YVEK-----QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+E + S A + GL S++ + N+LI M+S L Q
Sbjct: 649 GLEHFRDGVWISSLAWESGLESETMVANSLIEMFSEFRSLSQARAIFDRNPEKSVALHTT 708
Query: 177 ------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ A+ +F RM +E ++P++VTLV ++A D + KRVH+ E
Sbjct: 709 MLAAYVKGERGKEAALTLFARMLLEGLEPSSVTLVTAMSACGGLADPSSSKRVHERAREL 768
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G S + L+D Y K V A +F + L
Sbjct: 769 GLESETCVANGLVDMYGKAGDVDTARYIFDRAL 801
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 42/221 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F + + + +V + E + M V+G+ PD+ + +L C+ V
Sbjct: 287 LFDCLERRNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGV 346
Query: 141 EKQ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
+ H + GL ++ + L++M++ C +D+
Sbjct: 347 LDEDSWMAHDYIVGGGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNA 406
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
EA+ + ++++ VKPN +T ++ L A + +D R + H + ESG
Sbjct: 407 MITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQDGRAL---HLLIHESG 463
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
F V + L+ Y KC + + LF +M L WN+
Sbjct: 464 FDQEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDLASWNS 504
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 54/259 (20%), Positives = 102/259 (39%), Gaps = 52/259 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+FS+++ + + NS + ++ E +M +G + ++ F + SC D
Sbjct: 490 LFSEMAEKDLASWNSAIAAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTALNSCTDPAS 549
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------- 178
+ +H + ++ G +D+ + + +INMY C LD+ E
Sbjct: 550 LQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGGLDRAREIFTRVKTFDVILWTGMLTV 609
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTARARA--RDLRTVKRVHKCVDESGFW 227
++ F M E +KP VTLVN++T A + R + ESG
Sbjct: 610 YCQLGRTKQVMEHFRSMLHEGLKPTGVTLVNLITCVADSGLEHFRDGVWISSLAWESGLE 669
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST--AH 285
S + +L++ + + + +S+A +F + P+ V H+T A
Sbjct: 670 SETMVANSLIEMFSEFRSLSQARAIFDR-----------------NPEKSVALHTTMLAA 712
Query: 286 QISGPCPKKAHKLFFFSML 304
+ G K+A F ML
Sbjct: 713 YVKGERGKEAALTLFARML 731
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPT--IYTC-NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
R +F ++++ + + C N+++ Y ++ EA + +QG+ P+ F S +C
Sbjct: 387 REIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGAC 446
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------- 173
+ + + LH + G + + N L+ MY C L
Sbjct: 447 SSLQDGRALHLLIHESGFDQEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDLASWNSAI 506
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ DE IK+ +M E VT + L + L+ +H+ + + G+
Sbjct: 507 AAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTALNSCTDPASLQDGVLMHEKIVQCGYE 566
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + + +++ Y +C + RA ++F ++
Sbjct: 567 ADTVVASAVINMYGRCGGLDRAREIFTRV 595
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 61/274 (22%)
Query: 41 HFCLVSLEKCST---MRELKQIHAQMLRTSLFFDPC------------------ADYHVR 79
HF + S + + + E + +HA +L F C + H
Sbjct: 28 HFTVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAF 87
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
L F + + I N+I+RG +A FYH M+ G+ PD + +P + K+C+ +
Sbjct: 88 LTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLH 147
Query: 139 ------YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------- 177
+V + +H + ++ ++ +I+M++ C ++ PD
Sbjct: 148 ALQLGRWVHETMHGKT-----KANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWT 202
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EA+ +F +M E + P++V + ++L A R ++ + C S
Sbjct: 203 ALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRS 262
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
GF S + + ++D YCKC A +F M++
Sbjct: 263 GFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVY 296
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 41/277 (14%)
Query: 73 CAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C D VFS + + + ++++ GY+ L+ E++ Y MI GL + + S+
Sbjct: 281 CGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSV 340
Query: 132 FKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------ 176
+ + + KQ +H+ +K GL SD + + LI MY++C + +
Sbjct: 341 LPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDI 400
Query: 177 ----------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+ A F R+ +PN +T+V++L + LR K +H
Sbjct: 401 MVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGY 460
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF----PWNNYGQWAMSATVGPQG 276
V +SG +V + +L+D Y KC F+ +F +M+ +N S G +G
Sbjct: 461 VTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKG 520
Query: 277 LVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313
L + + P +K+ F S+L G+L
Sbjct: 521 LAFYEQMKEEGNRP-----NKVTFISLLSACSHAGLL 552
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 45/258 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTI 90
L +L K +++ K++H +L+ L D C +F S+ I
Sbjct: 341 LPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDI 400
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
NS++ GY AF + + P+ S+ C + K++H
Sbjct: 401 MVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGY 460
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
K GL + + N+LI+MYS C L+ Q ++
Sbjct: 461 VTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKG 520
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMD 238
+ + +M+ E +PN VT +++L+A + A L R + +++ G ++E + ++D
Sbjct: 521 LAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVD 580
Query: 239 AYCKCKFVSRAWDLFVKM 256
+ + A+ +M
Sbjct: 581 LIGRAGDLDGAYKFITRM 598
>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 677
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ + T ++ GYT A M +G+ P+ SL C
Sbjct: 271 EARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCG 330
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-- 171
D + K LH A++ + SD + +LI+MY+ C W
Sbjct: 331 DALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSA 390
Query: 172 ----CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+ +A+ +F RM E+V+PN TL ++L A A DLR +H + ++G
Sbjct: 391 IIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTG 450
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
F S ++ T L+ Y KC + A +F
Sbjct: 451 FMSSLDAATGLVHVYSKCGTLESAHKIF 478
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL--IPDRFMFPSLFKS 134
+ R +F ++ ++ + N ++R Y + L+H+A + M+ +G+ +PD + +P + K+
Sbjct: 67 YARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKA 126
Query: 135 CADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
++ K +H + ++ D ++ N L+ MY + ++
Sbjct: 127 AGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISW 186
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
++A+ +F M E+V + T+V++L +DL + VHK V+E
Sbjct: 187 NTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEE 246
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E+K L++ Y KC + A +F +M
Sbjct: 247 KRLGDKIEVKNALVNMYLKCGRMDEARFVFDRM 279
>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF ++ + T ++ GY A M +G+ P+ SL +C D
Sbjct: 273 RFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDA 332
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W---- 171
+ K LH AI+ + SD + +LI+MY+ C W
Sbjct: 333 LKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAII 392
Query: 172 --CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
C+ +A+ +F RM E+V+PN TL ++L A A DLR +H + ++GF
Sbjct: 393 AGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFM 452
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF 253
S ++ T L+ Y KC + A +F
Sbjct: 453 SSLDAATGLVHVYSKCGTLESAHKIF 478
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 33/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL--IPDRFMFPSLFKS 134
+ R +F ++ ++ + N ++R Y L+H+A + M+ +G+ +PD + +P + K+
Sbjct: 67 YARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKA 126
Query: 135 CAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
+ I + +H + ++ D ++ N L+ MY + ++
Sbjct: 127 AGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISW 186
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
++A+ +F M E V P+ T+V++L + L + VHK V+E
Sbjct: 187 NTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEE 246
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E+K L++ Y KC + A +F +M
Sbjct: 247 KRLGDKIEVKNALVNMYLKCGRMDEARFVFGRM 279
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F +S+P++ + N+I+ GY H EA + +M Q PDR + SCA++
Sbjct: 372 RQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAEL 431
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+ KQ+H+ + K G D ++ ++LIN+YS C ++
Sbjct: 432 GLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMI 491
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+A+ F RM P+ + + ++ A+ L +++H + + G+
Sbjct: 492 AGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYV 551
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+V + ++L++ YCKC V A F M P N W
Sbjct: 552 DNVFVGSSLVEMYCKCGDVGAARYYFDMM--PGKNIVTW 588
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTI 90
L S + + KQ+HA + + D C V + VFS++S +
Sbjct: 425 LSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDV 484
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
NS++ G++ +L +A + M G P F F ++ SCA ++ +Q+H+Q
Sbjct: 485 VCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQ 544
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EA 179
IK G + F+ ++L+ MY C + EA
Sbjct: 545 IIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEA 604
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
+ ++ M KP+ +T V VLTA
Sbjct: 605 VSLYKDMISSGEKPDDITFVAVLTA 629
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF + ++ + N ++ GY N+ +A + M G PD + ++ +C D
Sbjct: 308 VFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGD 367
Query: 138 IYVEKQLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ V +Q+ ++S S + N +++ Y+ EA+++F +M+ + P+
Sbjct: 368 VKVGRQIFD-----CMSSPSLISWNAILSGYNQSA---DHGEAVELFRKMQFQWQNPDRT 419
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
TL +L++ A L K+VH + GF+ V + ++L++ Y KC + + +F K+
Sbjct: 420 TLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKL 479
Query: 257 ----LFPWNN 262
+ WN+
Sbjct: 480 SELDVVCWNS 489
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYT 92
S K S++ + +QIHAQ+++ + C D R F + I T
Sbjct: 528 SCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVT 587
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
N ++ GY + EA Y +MI G PD F ++ +C+
Sbjct: 588 WNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACS 631
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 44 LVSLEKCSTMRELKQIHA----QMLRTSLF--------FDPCADYHV-RLVFSQISNPTI 90
L SL + +Q+HA + RT ++ + C + + +F +I+ I
Sbjct: 426 LSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDI 485
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
NS++ G + +L EAF F+ +M +G+ P +F + ++ CA + +Q+HSQ
Sbjct: 486 VCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQ 545
Query: 148 AIKFGLASDSFLHNTLINMYSSC-------WCLDQ---------------------PDEA 179
+ G +D+F+ + LI+MYS C W D DEA
Sbjct: 546 IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA 605
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRT-VKRVHKCVDESGFWSHVELKTTLMD 238
+ ++ M KP+ +T V VLTA + + + T +K + E G V+ T ++D
Sbjct: 606 VLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIID 665
Query: 239 AYCKCKFVSRAWDLFVKM 256
+ + + A L KM
Sbjct: 666 SLGRAGRLHEAEVLIDKM 683
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 55/249 (22%)
Query: 75 DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
D HV +F+++ I + N+++ T +A Y+ M +G +P F S+ +
Sbjct: 89 DAHV--LFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSA 146
Query: 135 CA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
C D+ ++ H +IK GL ++ ++ N L+ MY+ C C+
Sbjct: 147 CGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSF 206
Query: 174 ----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA-------RDLRTV-- 214
DQ +EA ++F M + ++V+L +VL +R D V
Sbjct: 207 TAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLS 266
Query: 215 -----KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN---- 261
++VH + GF S + L +L+D Y K + A +FV M + WN
Sbjct: 267 SDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIA 326
Query: 262 NYGQWAMSA 270
YGQ + S+
Sbjct: 327 GYGQKSQSS 335
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F +S+P++ + N+I+ GY+ H EA + EM + + PDR + S A +
Sbjct: 373 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 432
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W---- 171
+ +Q+H+ + K +D +L + LI MYS C W
Sbjct: 433 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMM 492
Query: 172 ---CLDQPD-EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
L+ D EA F +M + + P+ + VL+ A+ L ++VH + G+
Sbjct: 493 AGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYM 552
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ + + L+D Y KC V A +F ML WN
Sbjct: 553 NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWN 590
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
++F + ++ + N ++ GY K+ +A + M G PD + ++ +C
Sbjct: 306 AEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 365
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
DI +Q+ G++S S NT+++ YS + EA+K+F M+ +V P
Sbjct: 366 SGDIEAGRQMFD-----GMSSPSLSSWNTILSGYSQN---ENHKEAVKLFREMQFRSVHP 417
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ TL +L++ A L ++VH ++ F + + L + L+ Y KC V A +F
Sbjct: 418 DRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIF 477
Query: 254 VKM----LFPWNN 262
++ + WN+
Sbjct: 478 DRIAELDIVCWNS 490
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 102/269 (37%), Gaps = 67/269 (24%)
Query: 57 KQIHAQMLRTSL------------FFDPC-ADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
K IHA MLR+ L F+ C A R +F Q+ IYT N+I+ Y
Sbjct: 25 KLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKA 84
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
+ +A + + EM P+R + NTL
Sbjct: 85 SELEDAHVLFAEM------PERNIVS------------------------------WNTL 108
Query: 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
I+ + +A+ ++YRM E P TL +VL+A D+ +R H +
Sbjct: 109 ISALTRNGF---EQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIK 165
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
G +++ + L+ Y KC+ + A F + P V ++G +
Sbjct: 166 IGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEP----------NEVSFTAMMGGLAD 215
Query: 284 AHQISGPCPKKAHKLFFFSMLKKVHVPGV 312
+ Q++ +A +LF + ++HV V
Sbjct: 216 SDQVN-----EAFRLFRLMLRNRIHVDSV 239
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYH-VRLVF 82
SQ+ L K S++ + +Q+H+Q+ R D C D R VF
Sbjct: 519 SQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVF 578
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ T N ++ GY EA L Y +MI G PD F ++ +C+
Sbjct: 579 DMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACS 632
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 44/230 (19%)
Query: 58 QIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKN 104
Q HA ++TS F+D + R VF I + +I+ GY +
Sbjct: 134 QAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMER 193
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHN 161
+ EA+ + M + D+F++ S+ + ++ KQ+H A+K GL S + + N
Sbjct: 194 MAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGN 253
Query: 162 TLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKP 193
L+ MY C CLD EA+ +FY M + KP
Sbjct: 254 ALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKP 313
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
+ T V V+ A + L K++H ++G+ + T L+D Y KC
Sbjct: 314 SEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKC 363
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQA 148
T ++++ GY HEA ++ M + G P F F + +C+DI KQ+H +
Sbjct: 282 TWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYS 341
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------DQPD------------------EAI 180
+K G + L++MY+ C L +PD A+
Sbjct: 342 LKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETAL 401
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ RM++E + P+ +T+ +VL A + L K++H + GF V + + L Y
Sbjct: 402 TLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMY 461
Query: 241 CKCKFVSRAWDLFVKM----LFPWN 261
KC + +F +M + WN
Sbjct: 462 AKCGSLEDGNLVFRRMPSRDIMTWN 486
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 94/238 (39%), Gaps = 50/238 (21%)
Query: 15 ALSSDNSPLINLDNINNNNINSQYQAHFCLVS-LEKCS---TMRELKQIHAQMLRTSL-- 68
A + D+ +NL N ++N + F V + CS + E KQIH L+
Sbjct: 291 AQAGDSHEALNL--FYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYEC 348
Query: 69 ---FFDPCADYHV--------RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117
F D + R F + P I S++ GY + A Y M
Sbjct: 349 QIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQ 408
Query: 118 VQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174
++ ++P S+ ++C+ + KQ+H+Q IK+G + + + + L MY+ C L+
Sbjct: 409 MERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLE 468
Query: 175 QPD----------------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ +A+++F + KP+ VT VNVL+A
Sbjct: 469 DGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSA 526
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLF------------FDPCAD-YHVRLVFSQISNPTI 90
L +C+ ++L K IHAQ+LRT F + C +LVF I+N +
Sbjct: 17 LLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDV 76
Query: 91 YTCNSIVRGYTNKNLHHEAFL--FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLH 145
+ N ++ GY+ K +F+ + M + +P+ F +F + + + + Q H
Sbjct: 77 VSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAH 136
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWC-LDQ-------PD-------------------- 177
+ AIK D F+ ++LINMY C LD P+
Sbjct: 137 ALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAF 196
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA ++F M E + +VL+A + K++H ++G S + L+
Sbjct: 197 EAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALV 256
Query: 238 DAYCKCKFVSRAWDLF 253
Y KC + A F
Sbjct: 257 TMYGKCGCLDDALKTF 272
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 51/207 (24%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDP-------------CADYHVRLVFSQISNPTI 90
L+ C+ ++ L+ +H + +++ L D A + + +I +
Sbjct: 461 LKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQEL 520
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ NSI+ G++ EA F+ EM+ G+ PD F + ++ +CA+ I + KQ+H Q
Sbjct: 521 VSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQ 580
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK + D ++ +TL++MY+ C + PD
Sbjct: 581 IIKQEMLGDEYISSTLVDMYAKCG--NMPDSLLMFEKARKLDFVSWNAMICGYALHGQGL 638
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F RM+ NV PN T V VL A
Sbjct: 639 EALEMFERMQRANVVPNHATFVAVLRA 665
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LVF ++ + N+I+ + + +EM+ G+ PD F + S+ K+CA +
Sbjct: 409 LVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQ 468
Query: 140 -VEKQL--HSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------- 173
+E L H +AIK GL D+F+ +T+++MY C +
Sbjct: 469 SLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIIS 528
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
Q +EA + F M VKP+ T VL A + K++H + +
Sbjct: 529 GFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLG 588
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +TL+D Y KC + + +F K WN
Sbjct: 589 DEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWN 625
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 41/222 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F + + + TCN+++ G L EA + M G+ D +F +CA++
Sbjct: 307 RRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEV 366
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN----- 190
+ Q+H A+K G D + N ++++Y C L EA +F ME +
Sbjct: 367 KGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALV---EAYLVFQEMEQRDSVSWN 423
Query: 191 --------------------------VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
++P+ T +VL A A + L VH +S
Sbjct: 424 AIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKS 483
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
G + +T++D YCKC ++ A L ++ L WN+
Sbjct: 484 GLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNS 525
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + +P + + N+++ GY + + EM +G+ DR L KSC D
Sbjct: 107 LFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDD 166
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ + Q+H+ A+K GL +D + L++MY C L D+A++ F+ M N
Sbjct: 167 LALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSL---DDALRFFHGMGERN 216
>gi|255566993|ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536267|gb|EEF37919.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 576
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 35/213 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H +F +++P I + N+++ G+ EA F +M G++ D + ++ C+
Sbjct: 131 HALCIFETLNDPDIVSWNTVLSGFQRS---EEALNFALKMNSNGVVFDAVTYTTVLAFCS 187
Query: 137 DI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
I QLHS +K GL + F+ N LI MYS CL +
Sbjct: 188 RIEEFLFGLQLHSCILKVGLDCEVFVGNALITMYSRWGCLLEAGRVFEEMQTTDLVSWNA 247
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
EAI IF M +K + V+ + ++A R+L ++VH +
Sbjct: 248 IISGYTQAGIYGLEAISIFIEMVRRGIKLDHVSFTSAISACGHERNLEVGRQVHGLSIKR 307
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
G+ HV + L+ Y KC+ + A +F ML
Sbjct: 308 GYGKHVSVGNVLISTYSKCEIIEDAKLVFQNML 340
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 35/224 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHH-EAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
VF ++ + + N+I+ GYT ++ EA + EM+ +G+ D F S +C
Sbjct: 233 VFEEMQTTDLVSWNAIISGYTQAGIYGLEAISIFIEMVRRGIKLDHVSFTSAISACGHER 292
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
++ V +Q+H +IK G + N LI+ YS C ++
Sbjct: 293 NLEVGRQVHGLSIKRGYGKHVSVGNVLISTYSKCEIIEDAKLVFQNMLERNVVSWTTMIS 352
Query: 177 ---DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
+ A+ F M + V PN VT V ++ A + + K VH +SGF ++
Sbjct: 353 IDEENAVSFFNEMRYDEVDPNDVTFVGLIHAITIGDLVESGKTVHGFCIKSGFSLEPSVQ 412
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQWAMS 269
+ + Y K + +F ++ + WN Y Q +S
Sbjct: 413 NSFITMYAKFGSAEDSMKVFEELNYREIITWNALISGYAQNGLS 456
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF +++ I T N+++ GY L EA + + + + P+++ F S+ + D
Sbjct: 431 VFEELNYREIITWNALISGYAQNGLSQEAIITFFSALAESK-PNQYTFGSVLSAIGAAED 489
Query: 138 IYVE--KQLHSQAIKFGLASDSFLHNTLINMYS 168
I ++ + H+Q +K G SD + + L++MY+
Sbjct: 490 ISLKHGQMCHAQIMKLGFNSDPVVSSALLDMYA 522
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMY------SSCWC----LDQPD------- 177
C D + Q+H AI GL S + N+L+NMY + C L+ PD
Sbjct: 91 CGDKLLGSQIHGFAITSGLYSFITVPNSLMNMYCKSGQFTHALCIFETLNDPDIVSWNTV 150
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +M V +AVT VL +R + ++H C+ + G
Sbjct: 151 LSGFQRSEEALNFALKMNSNGVVFDAVTYTTVLAFCSRIEEFLFGLQLHSCILKVGLDCE 210
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V + L+ Y + + A +F +M L WN
Sbjct: 211 VFVGNALITMYSRWGCLLEAGRVFEEMQTTDLVSWN 246
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 46/276 (16%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRT---------SLFFDP-CADYHVRL---VFS 83
QY L + ++E K+IH ++R+ S D C VR VF
Sbjct: 270 QYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFK 329
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEK 142
+++N + + +++ GY EA + +M G+ PD F S+ SCA++ +E+
Sbjct: 330 RMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEE 389
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------- 174
Q H QA+ GL S + N LI +Y C ++
Sbjct: 390 GAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQ 449
Query: 175 --QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVE 231
+ +E I +F RM ++ +KP+AVT + VL+A +RA + R + + + G +
Sbjct: 450 FGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSD 509
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
T ++D + + + A + KM F ++ G WA
Sbjct: 510 HYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIG-WA 544
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 102/262 (38%), Gaps = 75/262 (28%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLF-----KS 134
+FS + N + NS++ GY EA Y+ M+ G++ +R F ++ +
Sbjct: 93 IFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQG 152
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS-------SCWCLDQPDEAIKIFYRME 187
C D+ +Q+H Q +KFG + F+ ++L++MY+ + D+ E + Y
Sbjct: 153 CVDL--GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTM 210
Query: 188 IENV-----------------KPNAVTLVNVLTA------RARARD-------------- 210
I + + ++++ ++T A A D
Sbjct: 211 ITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQ 270
Query: 211 ---------------LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
L+ K +H + SG+ +V + + L+D YCKC+ V A +F +
Sbjct: 271 YTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKR 330
Query: 256 M----LFPWN----NYGQWAMS 269
M + W YGQ S
Sbjct: 331 MANKNVVSWTAMLVGYGQNGFS 352
>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 602
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 109/269 (40%), Gaps = 49/269 (18%)
Query: 58 QIHAQMLRTS----LFFDPC---------ADYHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
QIHA++++T LF + A + VF + + SI+ G++
Sbjct: 122 QIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNG 181
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE----KQLHSQAIKFGLASDSFLH 160
EA LF+ EM+ + P+ + S+ +C + LH+ +K G +F+
Sbjct: 182 RGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVV 241
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
+ LI+ YS C +DQ +EA+K+F M +
Sbjct: 242 SCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLN 301
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P TL ++L A L+ ++VH V + G S+V + + L+D Y KC + A +
Sbjct: 302 PTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCV 361
Query: 253 F----VKMLFPWNNYGQWAMSATVGPQGL 277
F K W + + GP+GL
Sbjct: 362 FDQAVEKNTVLWTSMITGYAQSGRGPEGL 390
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA++ F+RM KP L L + A+ + ++H + ++GF ++ L + L+
Sbjct: 84 EALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 143
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC + A +F M
Sbjct: 144 DLYAKCDAIVDAKRVFDGM 162
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADY----------------HVRLVFSQISNPTI 90
L C T+ L QI + ++ L F+ DY H +F QI P +
Sbjct: 73 LYSCKTLNHLHQIQSHIINHGLQFN---DYITPKIITSFALFKRMRHAHKLFDQIPEPNV 129
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
N++++GY+ + H E + + +MI ++P+ F FP + KS I K +LH
Sbjct: 130 SNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHCF 189
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
IK G ++ F+ LI++YSS I YR+ E ++ N V +++
Sbjct: 190 VIKSGCRANPFVGTMLIDLYSS-------GRMIVSAYRVFGEMIERNVVAWTSMIKGFIL 242
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
D+ T +R+ + + V L ++ Y + RA +LF KM + WN
Sbjct: 243 CNDIETARRLFELAPQ----RDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWN 296
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKR 216
F N LI Y+ C E + F RM ++ V PN TLV VL+A AR L K
Sbjct: 324 FSWNGLIGGYAHHGCFL---EVLSSFKRMLVDGIVVPNDATLVTVLSACARLGALDLGKW 380
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
VH +G+ +V + L+D Y KC V A +F + L WN
Sbjct: 381 VHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWN 429
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIY 139
+F ++ +++ N ++ GY + E + M+V G+ +P+ ++ +CA +
Sbjct: 314 LFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACARLG 373
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD--------- 177
+ K +H A G + ++ N LI+MY+ C LD+ D
Sbjct: 374 ALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIG 433
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ +F RM+ KP+ +T + VL A
Sbjct: 434 GLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCA 469
>gi|297737392|emb|CBI26593.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F +I + + NSI++ + + + A FY M +P+ F P + SCA++ +
Sbjct: 89 LFDEIPHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELEL 148
Query: 141 ---EKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCL-----------DQPDEAIKIFYR 185
+ +H K GL + + + N L++MY L +Q EA + +
Sbjct: 149 VNYGRSIHGLVSKLGLFSGNQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMFS 208
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
E++KPN+ TLV+VL+A + L ++VH ++ F ++ + T L+D Y KC
Sbjct: 209 F-CEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQ 267
Query: 246 VSRAWDLFVKM----LFPWN 261
+ ++ ++F M + WN
Sbjct: 268 LEKSREIFNSMHERDVITWN 287
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 35/232 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCA 136
R VF +I + + NS++ GY EA + EM + G PD SL +C
Sbjct: 176 ARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACG 235
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
D+ + + + ++ G+ +S++ + LI+MY+ C L+
Sbjct: 236 ELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNA 295
Query: 177 -----------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
DEAI +F+ M+ + V N +TL VL+A A L K++ + + G
Sbjct: 296 VISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRG 355
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
F + + T L+D Y K + A +F M P N W AM + + G
Sbjct: 356 FQHDIFVATALIDMYAKSGSLDNAQRVFKDM--PQKNEASWNAMISALAAHG 405
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 116/286 (40%), Gaps = 54/286 (18%)
Query: 38 YQAHFCLVSLEK-CSTMRELKQIHAQMLRTSLFFDP-----CADYHVR------LVFSQI 85
Y CLV L K CS+ + L+Q+H QM+ S P H++ L+FS I
Sbjct: 21 YHTAECLVFLAKQCSSTKTLQQVHTQMVVNSSIHTPNNHLLSKAIHLKNFPYSSLLFSHI 80
Query: 86 S-NPTIYTCNSIVRGYTNKNLHHE-AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
+ +P Y N ++R T ++ A +H M+ L PD F FP F SCA++
Sbjct: 81 APHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSH 140
Query: 144 ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------------- 175
HS K L SD ++LI Y+ C +
Sbjct: 141 ACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAK 200
Query: 176 ---PDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
EA+++F M + +P+ ++LV++L A DL + V V E G +
Sbjct: 201 AGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSY 260
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQWAMS 269
+ + L+ Y KC + A +F M + WN Y Q M+
Sbjct: 261 IGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMA 306
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 34/213 (15%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R +F ++ + T N+++ GY + EA L +H M + ++ ++ +CA
Sbjct: 278 ARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACAT 337
Query: 138 IY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
I + KQ+ A + G D F+ LI+MY+ LD
Sbjct: 338 IGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAM 397
Query: 175 --------QPDEAIKIFYRMEIE--NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ EA+ +F M E +PN +T V +L+A A + R+ +
Sbjct: 398 ISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTL 457
Query: 225 -GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
G +E + ++D + + AWDL KM
Sbjct: 458 FGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKM 490
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 111/271 (40%), Gaps = 47/271 (17%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R+VF + + NSI+ GY+N EA + M +GL ++ ++ KS A
Sbjct: 344 RMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGS 403
Query: 139 YVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
+Q+H+ +IK G D ++ N+L++ Y C L+
Sbjct: 404 QANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMI 463
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+EA+K++ RM+ ++KP+A ++ A A K++H V + G
Sbjct: 464 TAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLL 523
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
S V +L++ Y KC + A +F ++ W W SA +G G A Q+
Sbjct: 524 SDVFAGNSLVNMYAKCGSIDDASCIFNEI--SWRGIVSW--SAMIGGLAQHGHGRKALQL 579
Query: 288 SGPCPKKAHKLFFFSMLKKVHVPGVLIQVHV 318
F+ MLK +P + V V
Sbjct: 580 ------------FYQMLKNGILPNHITLVSV 598
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + S++ Y+ L EA Y M + + PD F+F SLF +CA++
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSA 506
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
KQ+H +K GL SD F N+L+NMY+ C +D
Sbjct: 507 YEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGG 566
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+++FY+M + PN +TLV+VL+A
Sbjct: 567 LAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSA 601
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 31/204 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF +I P I + N+++ G + A +M + P F S K+CA I +
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
K QLHS +K + DSF+ LI+MYS C L
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG 364
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +F M E ++ N TL +L + A ++ ++VH +SG+
Sbjct: 365 YSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYD 424
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF 253
+ +L+D+Y KC + A +F
Sbjct: 425 GYVANSLLDSYGKCCLLEDAAKVF 448
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 50/217 (23%)
Query: 91 YTCNSIVRGYT-------NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK- 142
+T +S+++G + K +H A + EMI G+ P+ F ++ +CA + E
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALV--TEMISTGISPNEFSLSTVLNACAGLEDENY 206
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY---------------- 184
++H IK G SD F N L++MY+ C P+ AI +FY
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGC---PEAAIAVFYEIPKPDIVSWNAVIAG 263
Query: 185 ---------------RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+M V P+ TL + L A A ++ +++H + +
Sbjct: 264 CVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPD 323
Query: 230 VELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+ L+D Y KC + A +F K + WN+
Sbjct: 324 SFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNS 360
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 115/288 (39%), Gaps = 61/288 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLR---TSLFF------------DPCADYHVRLVFSQISNP 88
+ C++++ L KQIH Q L+ S+ F C+D + + NP
Sbjct: 108 ISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNP 167
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
Y N+++ G+ + F M G PDRF F L +C D+ + LH
Sbjct: 168 VAY--NALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLH 225
Query: 146 SQAIKFGLASDSFLHNTLINMYS----------------------------SCWCLDQPD 177
Q IK L S +F+ N +I MYS SC + +
Sbjct: 226 CQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHE 285
Query: 178 EAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A++ F M E V+P+ T + L A + + K++H + + + V L
Sbjct: 286 KALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNAL 345
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGR 280
++ Y KC +++A+ +F KM L WN M A G G G+
Sbjct: 346 INMYAKCGCIAKAYYIFSKMEHQNLVSWNT-----MIAGFGNHGFGGK 388
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 54/268 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
+ +CS + L+Q +HA ++T+ D H+ R VF ++S +
Sbjct: 10 IHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNL 69
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
+ ++++ GY A + ++ ++P+ +++ S+ +CA + KQ+H Q
Sbjct: 70 VSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGKQIHGQ 126
Query: 148 AIKFGLASDSFLHNTLINMYSSCW-CLD---------------------------QPDEA 179
A+KFGL S SF+ N LI MY C C D QPD+
Sbjct: 127 ALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKG 186
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ M + P+ T V +L DL+ + +H + S + ++
Sbjct: 187 FEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITM 246
Query: 240 YCKCKFVSRAWDLF----VKMLFPWNNY 263
Y K + A F K L WN +
Sbjct: 247 YSKLNLLEEAEKAFRSIEEKDLISWNTF 274
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIY 139
F I + + N+ + ++ N H +A + EM+ + + PD F F S +C+ +
Sbjct: 259 AFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLA 318
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
KQ+H I+ L D N LINMY+ C C+ +
Sbjct: 319 SMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIA 378
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
+A ++F +M+ VKP++VT V +LTA A
Sbjct: 379 GFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHA 418
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 46 SLEKCSTMREL---KQIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPT 89
+L CS + + KQIH ++RT L+ D A +FS++ +
Sbjct: 310 ALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQN 369
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQ 147
+ + N+++ G+ N +AF + +M G+ PD F L + A + E ++
Sbjct: 370 LVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFN 429
Query: 148 AIK--FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+++ +G++ + + LI++ L++ E +K F
Sbjct: 430 SMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKF 467
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMRELK---QIHA----QMLRTSLF--------FDPCADY-HVRLVFSQISNPTI 90
L+ CS + ++ Q+H+ +M++T +F + C + R VF +SN
Sbjct: 291 LKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 350
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
T SI+ + + EA + M + LI + S+ ++C + + K+LH+Q
Sbjct: 351 VTWTSIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQ 410
Query: 148 AIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQPDEA 179
IK + + ++ +TL+ +Y S C L EA
Sbjct: 411 IIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ M E V+PN T + L A A + L + +H ++ S+V + + L+
Sbjct: 471 LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHM 530
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC FVS A+ +F M P N W
Sbjct: 531 YAKCGFVSEAFRVFDSM--PEKNLVSW 555
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 56/282 (19%)
Query: 27 DNINNNNINS--QYQAHFCLVS--LEKCSTMRELKQIHAQMLRTSLFFDPCADY------ 76
+N+N ++++S + + L++ L+ + MR +K+IHA L+ FD Y
Sbjct: 68 ENVNRDDLSSFDSERVDYALLAEWLQSSNGMRLIKRIHAMALKC---FDDQVIYFGNNLI 124
Query: 77 ----------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDR 125
+ R VF + + T +++ GY L EAF + + + G+ +
Sbjct: 125 SSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGYLKFGLEDEAFSLFEDYVKHGIRFTNE 184
Query: 126 FMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------ 176
MF L C ++ + +Q+H +K G+ + + ++L+ Y+ C L
Sbjct: 185 RMFVCLLNLCSRRSEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRAFDM 243
Query: 177 ----------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
++AI +F M PN T+ ++L A + + +R
Sbjct: 244 MEEKDVISWTAVISACSRKGHGNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFG 303
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++VH V + + V + T+LMD Y KC +S +F M
Sbjct: 304 RQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 50/210 (23%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQI 85
+A CLV L++ KQIHA +++ +D C + R VF+QI
Sbjct: 508 KAAGCLVRLQQG------KQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQI 561
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EK 142
+P +++ G +A YH+M + G+ PD + F +L K+C+ + K
Sbjct: 562 PSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGK 621
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------------- 175
Q+H+ +K A D F+ +L++MY+ C ++
Sbjct: 622 QIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHG 681
Query: 176 -PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+EA+ F M+ V P+ VT + VL+A
Sbjct: 682 NAEEALNFFNEMKSRGVTPDRVTFIGVLSA 711
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 45/248 (18%)
Query: 57 KQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH ++R +++ + + R +F Q+ + + N+++ G
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARS 376
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY----VEKQLHSQAIKFGLASDSFL 159
L + + +++ GL+PD+F S+ ++C+ + V +Q+H+ A+K G+ DSF+
Sbjct: 377 GLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFV 436
Query: 160 HNTLINMYSSCWCLDQPD----------------------------EAIKIFYRMEIENV 191
LI++YS +++ + EA+++F M
Sbjct: 437 STALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGE 496
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
K + +T N A L+ K++H V + F + + + ++D Y KC + A
Sbjct: 497 KADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARK 556
Query: 252 LFVKMLFP 259
+F ++ P
Sbjct: 557 VFNQIPSP 564
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 48/258 (18%)
Query: 47 LEKCSTMREL----KQIHAQMLRTSLFFDPCADY-------------HVRLVFSQISNPT 89
L CS++ E +Q+H L+ + D L+F
Sbjct: 405 LRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFD 464
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ + N+++ G+T + + EA + M +G D+ F + K+ + KQ+H+
Sbjct: 465 LASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHA 524
Query: 147 QAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQPDE-- 178
IK D F+ + +++MY C W C++ +E
Sbjct: 525 VVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQ 584
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ +++M + V+P+ T ++ A + L K++H + + + T+L+D
Sbjct: 585 ALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVD 644
Query: 239 AYCKCKFVSRAWDLFVKM 256
Y KC + A+ LF +M
Sbjct: 645 MYAKCGNIEDAYGLFRRM 662
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 51 STMRELKQIHAQMLRTSLFFDP-----CADYHVRL--------VFSQISNPTIYTCNSIV 97
+ + + KQIHA +++ + FDP D + + +F +++ ++ N+++
Sbjct: 615 TALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMI 674
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC------ADIYVEKQLHSQAIKF 151
G EA F++EM +G+ PDR F + +C +D Y K S +
Sbjct: 675 VGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAY--KNFDSMQKTY 732
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
G+ + ++ L++ S EA K+ M E TL+N + D
Sbjct: 733 GVEPEIEHYSCLVDALSRA---GHIQEAEKVVSSMPFEASATMYRTLLNACRVQG---DK 786
Query: 212 RTVKRV 217
T +RV
Sbjct: 787 ETGERV 792
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 86 SNPTIYTCNSIVRGYTNKN-LH-----HEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
S+ + T N+I+ Y + LH HEAF + + ++ R LFK C
Sbjct: 77 SDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG 136
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ L A+K GL D F+ L+N+Y+ + EA +F RM + +V
Sbjct: 137 SPSASEALQGYAVKIGLQWDVFVAGALVNIYAK---FQRIREARVLFDRMPVRDV 188
>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
Length = 628
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F ++ + T N++V G TN E+ F+ +M +G+ PD F S+F+ CA
Sbjct: 126 ARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAG 185
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
D+ +Q+H+ ++ GL D + ++L +MY C CL + +
Sbjct: 186 LRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI 245
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
A++ F M V + VT V+ +++ + L +++H V ++G
Sbjct: 246 IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGV 305
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
V + T L+ Y +C + + +F F + + +SA + G G A +
Sbjct: 306 DKVVPVMTCLVHMYSRCGCLGDSERVF----FGYCGSDTFLLSAMISAYGFHGHGQKAIE 361
Query: 287 I 287
+
Sbjct: 362 L 362
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 47/202 (23%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPC-----ADYHVR--------LVFSQISNPTIYTC 93
C+ +R++ +Q+HA ++R+ L D C A ++R V + + +I +C
Sbjct: 183 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 242
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
N+I+ G T A ++ M G+ D F S SC+D+ +Q+H Q +K
Sbjct: 243 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 302
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
G+ + L++MYS C CL + +AI++
Sbjct: 303 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 362
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F +M +P+ VT + +L A
Sbjct: 363 FKQMMNGGAEPSDVTFLALLYA 384
>gi|302790281|ref|XP_002976908.1| hypothetical protein SELMODRAFT_106129 [Selaginella moellendorffii]
gi|300155386|gb|EFJ22018.1| hypothetical protein SELMODRAFT_106129 [Selaginella moellendorffii]
Length = 704
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 50/248 (20%)
Query: 59 IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNL 105
IH +++ L DP HV + VF ++ +P I + N I+ G+ ++
Sbjct: 45 IHDRIVSRGLDRDPTIADHVVYMYVKCGSFETAKSVFQRMPDPGILSWNRIIAGHAQRHE 104
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNT 162
EA + +++QG+ P R + + +C + V KQ+HSQ + G S +
Sbjct: 105 LEEAIATFRRLLLQGVTPGRITYVAALGACCGSRFLPVGKQIHSQIVAAGWDSSLIVSTA 164
Query: 163 LINMYSSCWCLDQPDEAIKIF------------------------------YR-MEIENV 191
LI+MY++C L AI++F YR M +E
Sbjct: 165 LIDMYAACGSLRG---AIRVFQGMKKRDVVAWTAIIAAFAQYGHLEKAFLTYRGMLLEGF 221
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P VT + +L A A RD + +H+ + E S + + L+ + KC + +A
Sbjct: 222 LPVLVTFLALLNALAEERDWDRGRWIHRHITEMKLESELSMAAALITMFGKCGDLKKARR 281
Query: 252 LFVKMLFP 259
+F ++ P
Sbjct: 282 VFRRIHQP 289
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F ++ P++ + +++ Y + EA + + +M+++G+ P R S ++C + +
Sbjct: 383 MFQRVERPSMVSWRTLLAAYVKHGRNEEALISFRKMLLEGISPGRGACVSALRACGSLRL 442
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL----------DQP----------- 176
Q +H + GL S + + T++ MY C CL +QP
Sbjct: 443 PGQGRLIHLIVRELGLESHNRVVCTVVEMYGKCKCLEDARSVFEKIEQPNPSSWNSIVAA 502
Query: 177 -------DEAI-KIFYRMEIENVKPNAVTLVNVLTARARARD----LRTVKRVHKCVDES 224
+EA ++F RM ++ VKP+ T VL+A A++ V +H + E
Sbjct: 503 YLDCGCMEEAFGQLFRRMLLDGVKPDKTTFTLVLSACMEAQEAPVSADQVAFIHSFIIEC 562
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
+ + L+ AY +CK + A+ +F K
Sbjct: 563 ELETDATIAVFLLSAYGRCKALQEAYAVFSK 593
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VFS+ + + N+++ + + FL + M +G++P+R F + + +
Sbjct: 590 VFSKNHHLGVAVWNAMISAFAENGVPKNGFLLFQRMAREGVMPNRSTFAGVLNAIGSVGA 649
Query: 141 E-----KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
K +HS+A++ G+ D + L+NMY C C+D AIK
Sbjct: 650 SGLEQGKIVHSEAVQLGIELDPIVATALVNMYHGCNCVDADVVAIK 695
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 38/206 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF +I P + NSIV Y + EAF + M++ G+ PD+ F + +C
Sbjct: 482 RSVFEKIEQPNPSSWNSIVAAYLDCGCMEEAFGQLFRRMLLDGVKPDKTTFTLVLSACME 541
Query: 136 ---ADIYVEKQ--LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------- 175
A + ++ +HS I+ L +D+ + L++ Y C L +
Sbjct: 542 AQEAPVSADQVAFIHSFIIECELETDATIAVFLLSAYGRCKALQEAYAVFSKNHHLGVAV 601
Query: 176 -------------PDEAIKIFYRMEIENVKPNAVTLVNVLTA--RARARDLRTVKRVHKC 220
P +F RM E V PN T VL A A L K VH
Sbjct: 602 WNAMISAFAENGVPKNGFLLFQRMAREGVMPNRSTFAGVLNAIGSVGASGLEQGKIVHSE 661
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFV 246
+ G + T L++ Y C V
Sbjct: 662 AVQLGIELDPIVATALVNMYHGCNCV 687
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGL-----IPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
++R Y N L + ++ +GL I D ++ ++ C K + +
Sbjct: 29 LLRAYANSKDLQAGILIHDRIVSRGLDRDPTIADHVVY--MYVKCGSFETAKSVFQRMPD 86
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G+ S N +I ++ + +EAI F R+ ++ V P +T V L A +R
Sbjct: 87 PGILS----WNRIIAGHAQ---RHELEEAIATFRRLLLQGVTPGRITYVAALGACCGSRF 139
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L K++H + +G+ S + + T L+D Y C + A +F M
Sbjct: 140 LPVGKQIHSQIVAAGWDSSLIVSTALIDMYAACGSLRGAIRVFQGM 185
>gi|302142104|emb|CBI19307.3| unnamed protein product [Vitis vinifera]
Length = 683
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 44/303 (14%)
Query: 3 APLPLHHQTRTPALSSD--NSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRE-LKQI 59
A LP TRTP S+ L + + +++ Q VS +C RE L I
Sbjct: 2 ASLPSVAVTRTPKSESEFRKYSASFLPSEKSPSVSYQRSTQLDGVSEARCLDFREALSFI 61
Query: 60 HAQMLRTSLFFDP----CADYHV--RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFY 113
S F+ P C D + R VF ++ + + +++ GY + + A +
Sbjct: 62 REGTKVESAFYVPILQECIDKKLTARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVF 121
Query: 114 HEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170
EM+ G P + + + +D++ + KQ+H +IK+ + D+ + N+L ++YS C
Sbjct: 122 REMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKC 181
Query: 171 WCLD----------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVL 202
L+ + ++ F M E V+PN TL + L
Sbjct: 182 GSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSAL 241
Query: 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LF 258
+ + L ++H + GF S++ +K ++M Y KC ++ A LF +M L
Sbjct: 242 SLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLV 301
Query: 259 PWN 261
WN
Sbjct: 302 TWN 304
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 24/185 (12%)
Query: 57 KQIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPTIYTCNSIVRGYTNK 103
KQIH ++ + FD C + F +I + + + +++ + +
Sbjct: 153 KQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDN 212
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
F+ EM+ + + P+ F S C + + Q+HS IK G S+ +
Sbjct: 213 GEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIK 272
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHK 219
N+++ +Y C + EA K+F ME ++ VT ++ AR D + H+
Sbjct: 273 NSIMYLYLKCGWI---HEAKKLFDEMETISL----VTWNAMIAGHARMMDFAKDDLAAHQ 325
Query: 220 CVDES 224
C E+
Sbjct: 326 CGTEA 330
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 49 KCSTMRELKQIHAQMLRTSLF-FDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHH 107
KC + E K++ +M SL ++ H R++ + + C +
Sbjct: 281 KCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGT------------ 328
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164
EA + ++ G+ PD F F S+ C+ + +Q+H+Q IK G SD ++
Sbjct: 329 EALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSD------VV 382
Query: 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
N QP +A+ +F M + V+PN +T V VL+A
Sbjct: 383 N--------GQPQQALLLFEDMRLAGVRPNKITFVGVLSA 414
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 38/211 (18%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--DIYVEK-Q 143
NP + N+I+ + + L Y M+ PD FPSL K+C D++
Sbjct: 10 NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69
Query: 144 LHSQAIKFGLASDSFLHNTLINMYS---------------------------SCWC-LDQ 175
H + I G +SDS++ +LIN YS C+ +
Sbjct: 70 FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
D A ++ M + ++P++VT++ +L+ +L ++ +H CV + GF S V L +
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSG---VLELVHLQCLHACVIQYGFGSDVALANS 186
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+++ YCKC V A LF M + WN+
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNS 217
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF + + + +++ YT H AF Y+ M QG+ P L +
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLE 161
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD---------- 177
+ + LH+ I++G SD L N+++N+Y C +D D
Sbjct: 162 LVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSG 221
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E +++ RM+ + ++P+ T ++++A A L K VH + +G
Sbjct: 222 YAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQD 281
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML 257
++T+L+ Y KC V+ A+ +F M+
Sbjct: 282 SHIETSLIGMYLKCGNVNSAFRIFEGMM 309
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + + NS+V GY E M G+ PD+ F SL + A
Sbjct: 203 LFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSK 262
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
+ V K +H ++ GL DS + +LI MY C W
Sbjct: 263 LGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISG 322
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
D D A+ +F RM V P+ T+ +VL A A VH +
Sbjct: 323 LVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLD 382
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + +L+ Y KC + ++ +F +M + WN
Sbjct: 383 IPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWN 418
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 115/304 (37%), Gaps = 49/304 (16%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKC-STMRELKQIHAQMLRTSLFFDP------------ 72
L + + I Q LVS S + K +H +LR L D
Sbjct: 235 LIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLK 294
Query: 73 CADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
C + + +F + + + + +++ G + A + M+ ++P S+
Sbjct: 295 CGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV 354
Query: 132 FKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------- 177
+CA++ + +H ++ + D N+L+ MY+ C L+Q
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414
Query: 178 -----------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+A+ +F M +P+++T+V++L A A L K +H
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNF 474
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280
V +S + + T L+D Y KC + A F +M P + W S+ + G G+
Sbjct: 475 VTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRM--PQQDLVSW--SSIIAGYGSHGK 530
Query: 281 HSTA 284
TA
Sbjct: 531 GETA 534
>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
Length = 825
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 55/271 (20%)
Query: 45 VSLEKCSTMRELK---QIHAQMLRTSLFFDP------------CADYHVR---LVFSQIS 86
+L+ C+ +L Q+HAQ ++ FDP C + V L+ S +
Sbjct: 166 AALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVR 225
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ--- 143
+ + N+++ Y + + L + +++ G ++ P++ K C ++ + K
Sbjct: 226 SDVSW--NALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQA 283
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD---------------- 177
+H IK GL +D L+N LI MYS C +D+PD
Sbjct: 284 VHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDM 343
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA IF +M VKPN T V + +R D+ + +H + +SGF +
Sbjct: 344 APEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDA 403
Query: 236 LMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
++ Y K V A F M P WN
Sbjct: 404 IVGMYVKTGAVQDAILAFDLMQGPDIASWNT 434
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
L F + P I + N+++ G+ + N + E+I +G++ +++ + + + C
Sbjct: 419 LAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLM 478
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------- 173
D+ Q+H+ +K G D + L++MY C
Sbjct: 479 DLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMS 538
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
D+ ++AI+ F M EN +PN TL L+ + L + ++H +SG W+
Sbjct: 539 TYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSG-WN 597
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ + L+D Y KC ++ A LF + L WN
Sbjct: 598 SSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNT 635
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 35/216 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF---KSCAD 137
VF++I P + C+ ++ + ++ EAF + +M G+ P+++ F L D
Sbjct: 319 VFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGD 378
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPDEA-------- 179
+ + + +H+ +K G + + + ++ MY + PD A
Sbjct: 379 VNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSG 438
Query: 180 ----------IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
++IF + E V N T V +L DLR +VH CV +SGF
Sbjct: 439 FYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGD 498
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++ L+D Y + + A +F ++ +F W
Sbjct: 499 YDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWT 534
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 105/262 (40%), Gaps = 47/262 (17%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRT-----SLFFDPCADYH--------VRLVFSQISNP 88
+L+ C+ R L K +HA++LR+ + D + + R VF + +
Sbjct: 65 AALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHR 124
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLH 145
+ ++V T A + EM +G++P+ F + K+C +D+ Q+H
Sbjct: 125 DVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVH 184
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI------------------------- 180
+QA+K D ++ ++L+ Y SC +D + A+
Sbjct: 185 AQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYA 244
Query: 181 ---KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+F ++ + + TL VL ++ + VH V + G + L L+
Sbjct: 245 KVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLI 304
Query: 238 DAYCKCKFVSRAWDLFVKMLFP 259
+ Y KC A+++F ++ P
Sbjct: 305 EMYSKCLSAEDAYEVFARIDEP 326
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 44 LVSLEKCSTMRELKQIHA----QMLRTSLF--------FDPCADYHV-RLVFSQISNPTI 90
L SL + +Q+HA + RT ++ + C + + +F +I+ I
Sbjct: 397 LSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDI 456
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
NS++ G + +L EAF F+ +M +G+ P +F + ++ CA + +Q+HSQ
Sbjct: 457 VCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQ 516
Query: 148 AIKFGLASDSFLHNTLINMYSSC-------WCLDQ---------------------PDEA 179
+ G +D+F+ + LI+MYS C W D DEA
Sbjct: 517 IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA 576
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRT-VKRVHKCVDESGFWSHVELKTTLMD 238
+ ++ M KP+ +T V VLTA + + + T +K + E G V+ T ++D
Sbjct: 577 VLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIID 636
Query: 239 AYCKCKFVSRAWDLFVKM 256
+ + + A L KM
Sbjct: 637 SLGRAGRLHEAEVLIDKM 654
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F +S+P++ + N+I+ GY+ H EA + EM + + PDR + S A +
Sbjct: 344 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 403
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W---- 171
+ +Q+H+ + K +D +L + LI MYS C W
Sbjct: 404 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMM 463
Query: 172 ---CLDQPD-EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
L+ D EA F +M + + P+ + VL+ A+ L ++VH + G+
Sbjct: 464 AGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYM 523
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ + + L+D Y KC V A +F ML WN
Sbjct: 524 NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWN 561
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 68/282 (24%)
Query: 57 KQIHAQMLRTSL------------FFDPC-ADYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
K IHA MLR+ L F+ C A R +F Q+ IYT N+I+ Y
Sbjct: 25 KLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKA 84
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-----DIYVEKQLHSQAIKFGLASDSF 158
+ +A + + EM + ++ + +L ++ A D+ ++ H +IK GL ++ +
Sbjct: 85 SELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIY 144
Query: 159 LHNTLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIEN 190
+ N L+ MY+ C C+ DQ +EA ++F M
Sbjct: 145 VGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNR 204
Query: 191 VKPNAVTLVNVLTARARA-------RDLRTV-------KRVHKCVDESGFWSHVELKTTL 236
+ ++V+L +VL +R D V ++VH + GF S + L +L
Sbjct: 205 IHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSL 264
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQWAMSA 270
+D Y K + A +FV M + WN YGQ + S+
Sbjct: 265 LDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSS 306
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
++F + ++ + N ++ GY K+ +A + M G PD + ++ +C
Sbjct: 277 AEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 336
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
DI +Q+ G++S S NT+++ YS + EA+K+F M+ +V P
Sbjct: 337 SGDIEAGRQMFD-----GMSSPSLSSWNTILSGYSQN---ENHKEAVKLFREMQFRSVHP 388
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ TL +L++ A L ++VH ++ F + + L + L+ Y KC V A +F
Sbjct: 389 DRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIF 448
Query: 254 VKM----LFPWNN 262
++ + WN+
Sbjct: 449 DRIAELDIVCWNS 461
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYH-VRLVF 82
SQ+ L K S++ + +Q+H+Q+ R D C D R VF
Sbjct: 490 SQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVF 549
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ T N ++ GY EA L Y +MI G PD F ++ +C+
Sbjct: 550 DMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACS 603
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 45/247 (18%)
Query: 57 KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
KQIH+ +++ + P D++V+ F +IS P + ++++ G++
Sbjct: 309 KQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQS 368
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
+ + + +G++ + F++ S+F++CA ++ + Q H AIK GL S +
Sbjct: 369 GRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGE 428
Query: 161 NTLINMYSSCW----------CLDQPD------------------EAIKIFYRMEIENVK 192
+ ++ MYS C +D+PD EA+ F RM+ V+
Sbjct: 429 SAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVR 488
Query: 193 PNAVTLVNVLTARARARDLRTVKR-VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
PNAVT + VLTA + + + K+ + + G ++ ++D Y + + A +
Sbjct: 489 PNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALE 548
Query: 252 LFVKMLF 258
L +M F
Sbjct: 549 LINRMPF 555
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 114/281 (40%), Gaps = 49/281 (17%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRT-------------SLF 69
L +++ +++ ++ CL E C +R L + IH ++ RT ++
Sbjct: 75 LKEMDDADVSVTPHSYQCL--FEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMY 132
Query: 70 FDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
D + V+ VF ++ + + ++ Y +A + +M G+ P+ ++
Sbjct: 133 CDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYM 192
Query: 130 SLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP---------- 176
SL +SC + + KQ+HS I+ L ++ + + NMY C L+
Sbjct: 193 SLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQ 252
Query: 177 ------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
+ A+++F RM +E V+ + VL D K++H
Sbjct: 253 NAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIH 312
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ + G S V + T L+D Y KC + A+ F ++ P
Sbjct: 313 SHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353
>gi|302753492|ref|XP_002960170.1| hypothetical protein SELMODRAFT_74627 [Selaginella moellendorffii]
gi|300171109|gb|EFJ37709.1| hypothetical protein SELMODRAFT_74627 [Selaginella moellendorffii]
Length = 876
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 37/188 (19%)
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
+ M G++P+ F S+ SC D+ V + +H A K+G SD + N+++NMY
Sbjct: 224 IFRAMENSGVVPNEVTFISMLSSCTVAEDLSVGRLIHEAADKYGYGSDVVVGNSVLNMYG 283
Query: 169 SCWCLDQP----DE--------------------------AIKIFYRMEIENVKPNAVTL 198
C +D+ DE A+++F M++E V N VT
Sbjct: 284 KCGDVDRARQLFDEMGDKHAAPVAWNSLMGAYTQTRNFVLAVELFSLMQLEGVIANKVTF 343
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ L A A ++ K V CV E G + +KT L+ + KC ++ A + ++L
Sbjct: 344 LAALNACAGLAEMTAGKTVVDCVVECGLFGDDLVKTALVSLFGKCGYLDVAESVLGEILV 403
Query: 259 P----WNN 262
P WN+
Sbjct: 404 PDSVSWNS 411
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 122/312 (39%), Gaps = 62/312 (19%)
Query: 5 LPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQ------ 58
+ + QTR L+ + L+ L+ + N + L +L C+ + E+
Sbjct: 312 MGAYTQTRNFVLAVELFSLMQLEGVIANKVT-------FLAALNACAGLAEMTAGKTVVD 364
Query: 59 -------IHAQMLRTSL--FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHE 108
+++T+L F C V V +I P + NSIV Y ++ H +
Sbjct: 365 CVVECGLFGDDLVKTALVSLFGKCGYLDVAESVLGEILVPDSVSWNSIVAAYASQQGHDQ 424
Query: 109 AFL-FYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLI 164
L +H M GLIP+ +F + +C+++ KQ +H + G+ S L+
Sbjct: 425 DVLRGFHLMHSHGLIPEDGVFVAALNACSNLGALKQGKLVHYLVRETGVESTDVF-TALV 483
Query: 165 NMYSSCWCL------------------------------DQPDEAIKIFYRMEIENVKPN 194
NMY C L +P+EA+ + RM+ E +P
Sbjct: 484 NMYGKCGELLTAREIFSSMPDEFRDALTWNGLINAHTQHGKPEEALSFYRRMQQEGTRPR 543
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
V+VL A A +R+H+ V E + T L++ Y K V AW++F
Sbjct: 544 KSVFVSVLNAVAALGSSVEGRRIHEQVAECSLDLDSTVGTLLVNMYAKSGDVDTAWEIFE 603
Query: 255 KM----LFPWNN 262
+M WN+
Sbjct: 604 RMQHSDTVTWNS 615
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 54 RELKQIHAQMLRTSLFFDPCADYHV-----RL--------VFSQISNPTIYTCNSIVRGY 100
R KQ+ A++ R + H+ RL F I + + N+++ Y
Sbjct: 50 RAAKQLEAEITRRGFRGNKSLGNHLINLYGRLGCVRDAAAAFDGIEEKNVVSFNAMITAY 109
Query: 101 T-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE--KQLHSQAIKFGLASDS 157
N + LF +++ + + F S+ KSC + +E + +H + GL++ +
Sbjct: 110 AQNGHSRQGLGLFRKLLLLDSKVANIVSFISVIKSCCNERLEECRWIHGLVDEAGLSTSN 169
Query: 158 FLHNT-LINMYSSCWCLDQPDEAIK-----------------------------IFYRME 187
+ T LINMY+ C + + IF ME
Sbjct: 170 IVVGTALINMYAVCGSVADAEAVFGSMESRNEITWSALIAAHAAVPGHACQIWDIFRAME 229
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
V PN VT +++L++ A DL + +H+ D+ G+ S V + ++++ Y KC V
Sbjct: 230 NSGVVPNEVTFISMLSSCTVAEDLSVGRLIHEAADKYGYGSDVVVGNSVLNMYGKCGDVD 289
Query: 248 RAWDLFVKM 256
RA LF +M
Sbjct: 290 RARQLFDEM 298
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS--QAIKFGLASDSFLHNTLINM 166
+ M+++G+ DR ++ +CA + K+LH + L SD+ L N L+ M
Sbjct: 644 LFARMLLEGIRVDRVTLLTMLSACASHASLSHGKKLHGLVSELNLSLESDTGLFNALVTM 703
Query: 167 YSSC--WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR-ARDLRTVKRVHKCVDE 223
YS C W + Q +F+ M + + +T +++TA AR + L+ V+ V + +++
Sbjct: 704 YSRCGSWEVSQA-----MFHAM--GSCHGDLITWNSMITACARHGQALQAVELV-RGMEQ 755
Query: 224 SGFWSHVELKTTLMDAYCK-CKFVSRAWDLFVKM 256
+G WS ++ T++ + C + +A++ F M
Sbjct: 756 AG-WSPDKVTLTVILSACSHAGLLDKAYECFQLM 788
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA-----------DYHVR------LVFSQISNPT 89
+ C T+R+L QIHA +++ D A D H R +F+Q+
Sbjct: 23 INTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 82
Query: 90 IYTCNSIVRGYTNKNLHHE--AFLFYHEMIVQGLI-PDRFMFPSLFKSCAD---IYVEKQ 143
++ N+I+RG++ + A + EM+ I P+RF FPS+ K+CA I KQ
Sbjct: 83 CFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQ 142
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+H A+K+G D F+ + L+ MY C + +A +FY+ IE
Sbjct: 143 IHGLALKYGFGGDEFVMSNLVRMYVICGLM---KDACVLFYKNIIE 185
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
NT+I+ YS +A+++F M+ E+++PN VTLV+VL A +R L + +H
Sbjct: 236 NTMISGYSQNGFFK---DAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHL 292
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
++SG L + L+D Y KC + +A +F ++ P N W+
Sbjct: 293 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERL--PRENVITWS 338
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 32/158 (20%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV-QGLIPDRFMFPSLFKSC-- 135
R++F ++ ++ + N+++ GY+ +A + EM + + P+ S+ +
Sbjct: 221 RMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSR 280
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------- 174
+ + + LH A G+ D L + LI+MYS C ++
Sbjct: 281 LGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAM 340
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
Q +AI F +M V+P+ V +N+LTA
Sbjct: 341 INGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 378
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 51/207 (24%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCADYHVRLVF-------------SQISNPTI 90
L+ C+ ++ L+ +H + +++ L D V ++ +I +
Sbjct: 439 LKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQEL 498
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ NSI+ G++ EA F+ EM+ G+ PD F + ++ SCA+ I + KQ+H Q
Sbjct: 499 VSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQ 558
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK + D F+ +TL++MY+ C + PD
Sbjct: 559 IIKQEMLGDEFISSTLVDMYAKCG--NMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGF 616
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+++F R + NV PN T V VL A
Sbjct: 617 EALEMFERTQKANVAPNHATFVAVLRA 643
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LVF ++ + N+I+ + + + +EM+ G+ D F + S+ K+CA +
Sbjct: 387 LVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQ 446
Query: 140 -VEKQL--HSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------- 173
+E L H +AIK GL D+F+ +T+++MY C +
Sbjct: 447 SLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIA 506
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
Q +EA K F M VKP+ T VL + A + K++H + +
Sbjct: 507 GFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLG 566
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ +TL+D Y KC + + +F K+ WN
Sbjct: 567 DEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWN 603
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
+P + + N+++ GY + + + EM G+ PDR L K+C D+ + Q
Sbjct: 125 DPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQ 184
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNV- 201
+H+ A+K GL D + L++MY C L ++A+ F+ M E +V AV V
Sbjct: 185 IHALAVKTGLEMDVRAGSALVDMYGKCRSL---EDALHFFHGMGERNSVSWGAVIAGCVQ 241
Query: 202 ---------LTARARARD-LRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
L R +A L T +++H ++ F S + T ++D Y K
Sbjct: 242 NEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAK 292
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 81/219 (36%), Gaps = 50/219 (22%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F + N T+ TCN+++ G L EA + M G+ +F +CA++
Sbjct: 300 RRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEV 359
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-------- 190
G D + N ++++Y C L EA +F ME +
Sbjct: 360 K------------GFDVDVCVRNAILDLYGKCKALV---EAYLVFQEMEQRDSVSWNTII 404
Query: 191 -----------------------VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
++ + T +VL A A + L VH +SG
Sbjct: 405 AALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLG 464
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ +T++D YCKC ++ A L ++ L WN+
Sbjct: 465 LDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNS 503
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 58/298 (19%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADYHVR-LVFSQI--- 85
+ H CL+ L+ CS+++ L QIH Q+ +SL D + H + L F++
Sbjct: 12 KKHQCLIFLKLCSSIKHLLQIHGQIHVSSLQNDSFIISELIRVSSLSHTKDLAFARTLLL 71
Query: 86 --SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYV 140
S+ T T N + RGY++ + E+ Y EM + + P++ FP L K+CA +
Sbjct: 72 HSSDSTPSTWNMLTRGYSSSDTPVESIWVYSEMKRRRIKPNKLTFPFLLKACASFLGLTA 131
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME------------- 187
+Q+ + +K G SD ++ N LI++Y SC + +A K+F M
Sbjct: 132 GRQIQVEVLKHGFDSDVYVGNNLIHLYGSC---KKTSDARKVFDEMTERNVVSWNSIMTA 188
Query: 188 -IENVK-----------------PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+EN K P+ T+V +L+ A +L K VH V +
Sbjct: 189 LVENGKFNLVVECFFEMIGRQFCPDETTMVVLLS--ACGGNLSLGKLVHSQVMVRELELN 246
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
L T L+D Y K + A +F +M + W SA + G A Q+
Sbjct: 247 CRLGTALVDMYAKSGGLKYARLVFERM----ADKNVWTWSAMIVGLAQYGFAEEALQL 300
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 121/276 (43%), Gaps = 54/276 (19%)
Query: 41 HFCLVSLEK-CSTMRELK---QIHAQMLRTSLFFDPCA-----DYHVRL--------VFS 83
HF S+ K CS + + K Q+HA +L++ D A + + VFS
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIY--- 139
+I + + S++ G++ EA + EM+ Q + P+ F+F S F +C+ +
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPD 318
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSC----------WCLDQPD------------ 177
+Q+H IKFGL SD F +L +MY+ C + +++PD
Sbjct: 319 CGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFA 378
Query: 178 ------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
E+ F +M + PN VT++++L A + L +VH + + GF +
Sbjct: 379 SVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIP 438
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
+ +L+ Y KC ++ A +F + + WN
Sbjct: 439 VCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNT 474
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
+ CS++R L ++IH ML + D H+ R +F + +
Sbjct: 105 INACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNV 164
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ S++ GY+ A Y +M+ G IPD F F S+ KSC+ D + +QLH+
Sbjct: 165 VSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAH 224
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---------------- 191
+K +D N LI+MY+ Q +AI +F R+ I+++
Sbjct: 225 VLKSEFGADLIAQNALISMYTK---FSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281
Query: 192 ----------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+PN + +A ++ + +++H + G S + +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L D Y KC F+ A +F + L WN
Sbjct: 342 LCDMYAKCGFLESARTVFYHIEKPDLVAWN 371
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF I P + N+I+ G+ + + E+ F+ +M GL+P+ SL +C++
Sbjct: 356 RTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEP 415
Query: 139 YVEK---QLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W--- 171
+ Q+HS +K G D + N+L++MYS C W
Sbjct: 416 VMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTL 475
Query: 172 ---CL--DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
CL +Q E +++ M +KP+ VTL NVL + + ++H + +SG
Sbjct: 476 LTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + L++ Y KC + A +F
Sbjct: 536 NLDISVSNALINMYTKCGSLECARKMF 562
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 33/168 (19%)
Query: 70 FDPCADYHVRL-VFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C++ + L VF I N I + N+++ +N E M + PD
Sbjct: 447 YSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVT 506
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
++ S I V Q+H +K GL D + N LINMY+ C L+
Sbjct: 507 LTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG 566
Query: 175 QPD------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
PD EA ++F M VKPN +T V +LTA
Sbjct: 567 NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 17/155 (10%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
LVS + ++ QIH ++++ L D C R +F I NP I
Sbjct: 511 LVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDI 570
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQL---HS 146
+ +S++ GY EAF + M G+ P+ F + +C+ I VE+ L +
Sbjct: 571 ISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRT 630
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
+ ++ + ++++ + CLD ++ IK
Sbjct: 631 MQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIK 665
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 47/227 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
V F ++S + + N+++ GY+ + EA Y ++ +G+ PD F F LF SC
Sbjct: 301 VERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSV 360
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194
+ + Q+H ++KFGL SD + N+++N YS C D EA + R PN
Sbjct: 361 SSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINR-------PN 413
Query: 195 AVTLVNVLTARAR----ARDLRTVKRVHKCVDES------------GFWSHVE------- 231
+V +++ A+ + L ++ K +D++ W+ VE
Sbjct: 414 SVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHA 473
Query: 232 ------------LKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + ++D Y KC V A +F M P N W
Sbjct: 474 HVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVM--PEKNVVSW 518
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 35/201 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ----GLIPDRFMFPSLF 132
R +F + + NS++ GY+ + L+ EA + MI L+ F ++
Sbjct: 94 EARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVL 153
Query: 133 KSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------- 176
K+C + + K +H A+K G SD F+ + + MY C LD
Sbjct: 154 KACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIV 213
Query: 177 ---------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+EAI++FY+ME+E KPN T VL A D + H V
Sbjct: 214 AWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKV 273
Query: 222 DESGFWSHVELKTTLMDAYCK 242
+ G V + T L+D Y K
Sbjct: 274 LKLGCSMDVFVATALVDMYSK 294
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 93/205 (45%), Gaps = 31/205 (15%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---A 136
L F QI N I N+++ GY EA +++M ++G P+ F + K+ +
Sbjct: 202 LAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMS 261
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW------------------------- 171
D V + H++ +K G + D F+ L++MYS +
Sbjct: 262 DSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALIT 321
Query: 172 ---CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ + +EA++++ +++ E ++P++ T V + ++ + + + +VH + G S
Sbjct: 322 GYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDS 381
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF 253
V + ++++ Y KC F A + F
Sbjct: 382 DVSVGNSIVNFYSKCGFTDSALEAF 406
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-Y 139
VF I + N++V GY HE M G PD F + S+ +CA + +
Sbjct: 242 VFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEH 301
Query: 140 VE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
VE +QLHS IK AS+ F+ N LI+MY+ L+
Sbjct: 302 VEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIVG 361
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA +F +M + + P+ V+L ++L+A A K +H +SG +
Sbjct: 362 YVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVKSGLETS 421
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++L+D Y KC V A + M
Sbjct: 422 LYAGSSLIDMYAKCGDVGSAQKILKSM 448
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 97/246 (39%), Gaps = 48/246 (19%)
Query: 64 LRTSLF--------FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYH 114
L TSL+ + C D + + + ++ + N+++ GY NL EA + +
Sbjct: 418 LETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVNLE-EAIILFE 476
Query: 115 EMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLA-SDSFLHNTLINMY--- 167
+M +GL P F SL C + + Q+H +K GL D FL +L+ MY
Sbjct: 477 KMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSLLGMYVKS 536
Query: 168 ------------------SSCWC-----LDQ---PDEAIKIFYRMEIENVKPNAVTLVNV 201
+ W L Q DEA++ + M N P+ T V+V
Sbjct: 537 LRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSV 596
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----- 256
L A A + + +H + +G + L+D Y KC V + +F M
Sbjct: 597 LRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSKND 656
Query: 257 LFPWNN 262
+ WN+
Sbjct: 657 VISWNS 662
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 31/180 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIK 150
N+I+ GY + EAFL + +M + G++PD S+ +CA++ +Q +H ++K
Sbjct: 356 NAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVK 415
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP---------------------------DEAIKIF 183
GL + + ++LI+MY+ C + +EAI +F
Sbjct: 416 SGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVNLEEAIILF 475
Query: 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF-WSHVELKTTLMDAYCK 242
+M+ E + P+ +T ++L L ++H + + G + L +L+ Y K
Sbjct: 476 EKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSLLGMYVK 535
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 79 RLVFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R++FS+ SNP + +++ G N EA FY EM +PD+ F S+ ++CA
Sbjct: 543 RILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACAV 602
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ------------------- 175
I +++HS + GL D + LI+MY+ C +
Sbjct: 603 LSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISWNS 662
Query: 176 ----------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
+ A++IF M+ +V P+ VT + VLTA + A + +++
Sbjct: 663 MIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHAGRVSEGRQI 714
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + + S++ GY L EA + +M G PD+ F ++ A +
Sbjct: 73 RRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVIN--AYV 130
Query: 139 YVEKQLHSQAIKFGLASDSFLH-NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ + + + F + + + + N +I+ ++ ++I++F M +K T
Sbjct: 131 ALGRLDDALGLFFQMPNPNVVAWNVMISGHAQ---RGHETKSIELFCNMRKAGIKSTRST 187
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L +VL+A A DL VH + G S+V + ++L++ Y KCK + A +F
Sbjct: 188 LGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVF 243
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 124/291 (42%), Gaps = 55/291 (18%)
Query: 39 QAHFCLVSLEKCSTMRELKQIHAQMLRT----------SLFF---------DPCADYHVR 79
Q H SL C ++ LKQIH ++T L F D +
Sbjct: 5 QLHLFSHSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSIL 64
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
L S + + CN+I+R + +++ F +EM+V GL PD F P + K+ A
Sbjct: 65 LTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQ 124
Query: 137 DIYVEKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQP----DE------------- 178
I +Q+H+++IK G+ + ++ NTL+ +YS C + DE
Sbjct: 125 GIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLI 184
Query: 179 -----------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GF 226
A++ F M ++ + TLV VL+A + DL ++VH +
Sbjct: 185 QAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDM 244
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
+ V + L+D Y KC ++ A+ +F +M P N W AM + + QG
Sbjct: 245 KADVFVGNALLDMYLKCDDLNSAYKVFDEM--PVKNVVTWNAMISGLAYQG 293
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 46/261 (17%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSL-------------FFDPCADYH-VRLVFSQISN 87
L +L +RE +QIHA+ ++T + + C H V+ VF + +
Sbjct: 115 LVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPH 174
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQL 144
+ + ++++ +T L+ A + EM L D + +C D+ + +++
Sbjct: 175 RDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKV 234
Query: 145 HSQAIKF-GLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
HS + + +D F+ N L++MY C L+
Sbjct: 235 HSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGR 294
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
EA+ F M+ + VKP+ VTLV VL + A L K VH + + + +
Sbjct: 295 YREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNA 354
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + A+ +F M
Sbjct: 355 LLDMYAKCGSIDEAFRVFESM 375
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + T N+++ G + + EA + M +G+ PD + SCA++ V
Sbjct: 270 VFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGV 329
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
K +H+ + + +D F+ N L++MY+ C + DEA ++F M+ +V
Sbjct: 330 LEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSI---DEAFRVFESMKRRDV 380
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 32/157 (20%)
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------------WCLD---------- 174
V Q H+ ++K LASDSF+ N LINMYSSC W D
Sbjct: 111 VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 170
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P++A++ F++M E V+ + VTL+NVL A AR ++ H V +GF +
Sbjct: 171 YIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEIN 230
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ ++L+ Y KC V A +F +M P N W
Sbjct: 231 CYIGSSLVSMYAKCGMVEEARRVFNRM--PERNVVCW 265
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
N+I+ GY + ++A +H+M + + D ++ +CA + V H+ +
Sbjct: 165 NTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVL 224
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G + ++ ++L++MY+ C +++ EA+ +
Sbjct: 225 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDL 284
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M+I VK + T+ V+++ + L + +H D G + +K +L+D Y K
Sbjct: 285 FRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSK 344
Query: 243 CKFVSRAWDLFVKM----LFPWN 261
C V++A+ +F + +F W
Sbjct: 345 CGDVNKAYQIFHGLTKRDVFTWT 367
>gi|356574307|ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g43790-like [Glycine max]
Length = 516
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL----FF--------DPCADYHVRLVFSQISNP 88
H L L+KC + LKQ+HAQML T L +F A + +F+ I +P
Sbjct: 4 HPILQKLQKCHNLNTLKQVHAQMLTTGLSLQTYFLSHLLNTSSKFASTYALTIFNHIPSP 63
Query: 89 TIYTCNSIVRGYT--NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
T++ N+++ T + +H L+ H + L P+ F FPSLFK+CA +
Sbjct: 64 TLFLYNTLISSLTHHSDQIHLALSLYNHILTHNTLQPNSFTFPSLFKACASHPWLQHGPP 123
Query: 144 LHSQAIKF-GLASDSFLHNTLINMYS-------SCWCLDQPDEA-IKIFYRMEIENVKPN 194
LH+ +KF D F+ N+L+N Y+ S + +Q E + + M + +KPN
Sbjct: 124 LHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLXVSRYLFNQISEPDLATWNTMLLSQIKPN 183
Query: 195 AVTLVNVLTARARARDLRTVKRVHKC 220
VT V +++A + L KC
Sbjct: 184 EVTPVALISACSNLGALSQGDMYSKC 209
>gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1040
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 52/303 (17%)
Query: 10 QTRTPALSSDNSPLINL--DNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTS 67
+ R + ++ LINL + +N++ H +V+ C + ++ +L
Sbjct: 207 RMRNENVQPNSVTLINLLRATVESNSLKIGKVLHSLVVASNLCKEL----TVNTALLSMY 262
Query: 68 LFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
D D RL+F ++ + N ++ Y+ E+ + M+ G+ PD F
Sbjct: 263 AKLDSLKD--ARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLELVYCMVRSGIRPDMFT 320
Query: 128 -FPSL--FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------- 173
P++ I KQLH+Q I+ G +HN+L++MYS+C L
Sbjct: 321 AIPAISSITKLKSIEWGKQLHAQVIRNGSDYQVSVHNSLVDMYSTCADLNSARKIFGLIK 380
Query: 174 -----------------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
D EA+ +F M++ K + V ++N+L A A+ L V
Sbjct: 381 DRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVINILPAFAKIGALHYVGY 440
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF------VKMLFPWN-------NY 263
+H ++ S LKT+L+++Y KC + A LF +K + WN N+
Sbjct: 441 LHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEEKSSLKDIVAWNSMITAYSNH 500
Query: 264 GQW 266
G+W
Sbjct: 501 GEW 503
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 56/295 (18%)
Query: 47 LEKCSTMRELKQIHAQMLR---------TSLFFDPCADYHV----RLVFSQISNPTIYTC 93
L C+ + L+QIHA+ +S D +++ + +FS NP
Sbjct: 28 LNLCTKPQYLQQIHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKIFSFTENPDSIIY 87
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL----HSQAI 149
N+ +R + + Y EM+ + + PD S+ KS ++ EK L H +
Sbjct: 88 NAFLRNLFMFGEYEKTLFLYKEMVQKSMCPDEDCCFSVLKSLFYVFHEKGLIMMAHGHVV 147
Query: 150 KFGLASDSFLHNTLINMYS------------------------SCWCLDQPDEAIKIFYR 185
K G+ + + NTLI +Y + + E+ ++F R
Sbjct: 148 KLGMDAFDLVGNTLIELYGFLNGNGLVERKSVTKLNFWNNLIYEAYESGKIVESFELFCR 207
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M ENV+PN+VTL+N+L A + L+ K +H V S + + T L+ Y K
Sbjct: 208 MRNENVQPNSVTLINLLRATVESNSLKIGKVLHSLVVASNLCKELTVNTALLSMYAKLDS 267
Query: 246 VSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFF 300
+ A +F KM P + W + +V + SG CPK++ +L +
Sbjct: 268 LKDARLMFEKM--PEKDVVVWNIMISV------------YSGSG-CPKESLELVY 307
>gi|242058803|ref|XP_002458547.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
gi|241930522|gb|EES03667.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
Length = 483
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 46 SLEKCSTMRELKQIHAQMLR----------TSLFFDPCADYH----VRLVFSQISNPTIY 91
++ C++ L + +LR S FF C ++F+ + P ++
Sbjct: 29 TINTCTSAAALAPLRVHILREPALLRSTAVVSAFFLACGRLRSLDPALVLFASLPRPHVF 88
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKF 151
NS++R LF H I G+ P+R+ FP + S + ++ +HSQ K
Sbjct: 89 VFNSLLRSLPAAPACSPLPLFRH-FIGLGVRPNRYTFPLMLTSLSSLHELSAVHSQVAKS 147
Query: 152 GLASDSFLHNTLINMYSSC--------WCLDQ---PD------------------EAIKI 182
G A D + N L+ Y++C D+ PD A+
Sbjct: 148 GFARDLHVRNALLASYAACDPDLGHAEQLFDEMPSPDVVAWTTMITAYRNRGRSFHALST 207
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F RM +V PN VT+V+ L A A + T +H+ V + G+ V L T L+D Y K
Sbjct: 208 FRRMFAASVAPNRVTMVSALGACAAHGAVDTGIWIHQYVQKQGWELDVVLGTALVDMYGK 267
Query: 243 CKFVSRAWDLFVKM 256
C V +F +M
Sbjct: 268 CGHVVEGVRVFSEM 281
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 45/203 (22%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDP------CADY--------HVRLVFSQISNPTIYT 92
L S++ EL +H+Q+ ++ D A Y H +F ++ +P +
Sbjct: 128 LTSLSSLHELSAVHSQVAKSGFARDLHVRNALLASYAACDPDLGHAEQLFDEMPSPDVVA 187
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAI 149
+++ Y N+ A + M + P+R S +CA + +H
Sbjct: 188 WTTMITAYRNRGRSFHALSTFRRMFAASVAPNRVTMVSALGACAAHGAVDTGIWIHQYVQ 247
Query: 150 KFGLASDSFLHNTLINMYSSC---------------------------WCLDQPDE-AIK 181
K G D L L++MY C + L+Q E A++
Sbjct: 248 KQGWELDVVLGTALVDMYGKCGHVVEGVRVFSEMTERNVCTWNSIIGAFALEQNGEMALR 307
Query: 182 IFYRMEIENVKPNAVTLVNVLTA 204
FYRM+ + V+P+AVTL+ VL A
Sbjct: 308 WFYRMKADGVRPDAVTLICVLYA 330
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 48/251 (19%)
Query: 49 KCSTMRELKQIHAQMLRTS------------LFFDPCAD-YHVRLVFSQISNPT--IYTC 93
K +++ QIH+Q++ T+ L + C +H L+F+ +P+ + T
Sbjct: 109 KLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTW 168
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
+++ + N +A F++ M G+ P+ F F ++ +CA + +Q+H+ K
Sbjct: 169 TTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHK 228
Query: 151 FGLASDSFLHNTLINMYSSCWCL--------DQP--------------------DEAIKI 182
+D F+ L++MY+ C + + P AI +
Sbjct: 229 HCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGV 288
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F E+ ++ P+ V++ +VL+A A +L K+VH + + G V +K +L+D YCK
Sbjct: 289 F--REVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCK 346
Query: 243 CKFVSRAWDLF 253
C A LF
Sbjct: 347 CGLFEDATKLF 357
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 50/286 (17%)
Query: 16 LSSDNSPLINLDNINNNNINSQYQAHFCLVS-LEKCS---TMRELKQIHAQMLRTSLFFD 71
LS N P L N Y HF + L C+ + E +QIHA + + D
Sbjct: 175 LSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLND 234
Query: 72 P-----CADYHVRL--------VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118
P D + + VF ++ + + + NS++ G+ L+ A + E++
Sbjct: 235 PFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLS 294
Query: 119 QGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
G PD+ S+ +CA ++ KQ+H +K GL ++ N+L++MY C +
Sbjct: 295 LG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFED 352
Query: 176 P----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
++A F M E V+P+ + ++ A A
Sbjct: 353 ATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASAS 412
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L +H V ++G + + ++L+ Y KC + A+ +F
Sbjct: 413 IAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVF 458
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 47/205 (22%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTI 90
L C+ + EL KQ+H +++ L + C + +F + +
Sbjct: 306 LSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDV 365
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQ 147
T N ++ G +A ++ MI +G+ PD + SLF + A I Q +HS
Sbjct: 366 VTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSH 425
Query: 148 AIKFGLASDSFLHNTLINMYSSCWC-LDQ---------------------------PDEA 179
+K G +S + ++L+ MY C LD +EA
Sbjct: 426 VLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEA 485
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
IK+F M E V P +T V+VL+A
Sbjct: 486 IKLFEEMLNEGVVPEYITFVSVLSA 510
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
TLIN S ++P +A+ F RM + PN T +L A A A L +++H +
Sbjct: 170 TLINQLSRS---NKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALI 226
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+ F + + T L+D Y KC + A ++F +M L WN+
Sbjct: 227 HKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNS 271
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L +QIHAQ+L+ +F+ C + +++FS++
Sbjct: 54 LQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVR 113
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLH 145
+++ +I+ L A + + EM+ G+ PD F+ P++ K+C + + +H
Sbjct: 114 NVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVH 173
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD-------------------- 177
K GL F+ ++L +MY C LD PD
Sbjct: 174 GYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNE 233
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++ M E ++P VT+ L+A A + K+ H +G L T+++
Sbjct: 234 EAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSIL 293
Query: 238 DAYCKCKFVSRAWDLFVKML----FPWN 261
+ YC + A +F M+ WN
Sbjct: 294 NFYCXVGLIEYAEMIFDGMIEKXXVTWN 321
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF I + N+++ GY ++ EA EM +G+ P R + + A+
Sbjct: 205 RKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANM 264
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------ 177
I KQ H+ I GL D+ L +++N Y ++ +
Sbjct: 265 GGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLI 324
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EAI + M EN+K + VTL +++A ++L+ K + G
Sbjct: 325 SGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLE 384
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
S + L +T +D Y KC + A +F K L WN
Sbjct: 385 SDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWN 422
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
CL + + E KQ HA + L D + ++F +
Sbjct: 257 CLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKX 316
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHS 146
T N ++ GY + L EA M + L D +L S ++ + K++
Sbjct: 317 XVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 376
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLD----------QPD------------------E 178
I+ GL SD L +T ++MY+ C + Q D E
Sbjct: 377 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 436
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E+V PN +T ++ + R + K + + SG + ++ TT+M+
Sbjct: 437 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMN 496
Query: 239 A 239
Sbjct: 497 G 497
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 9/182 (4%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLF 132
+ + VF + N+++ Y + L EA ++EM ++ + P+ + SL
Sbjct: 405 NAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLL 464
Query: 133 KSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192
++ + K++ Q G+ + T++N C +EAI +M+ ++
Sbjct: 465 RN-GQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGC---SEEAILFLRKMQESGLR 520
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE-LKTTLMDAYCKCKFVSRAWD 251
PNA T+ L+A A L + +H + + +S ++T+L+D Y KC +++A
Sbjct: 521 PNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKAER 580
Query: 252 LF 253
+F
Sbjct: 581 VF 582
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 113/254 (44%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNPTI 90
L C+++ +L KQ+H+ +L+ + D D +V+ +F +
Sbjct: 251 LAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNV 310
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
N ++ Y + ++F + +M+ G+ P+ F +P L ++C +I + +Q+H
Sbjct: 311 VLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLL 370
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+IK G SD ++ LI+MYS LD+ EA
Sbjct: 371 SIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEA 430
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ F M++ + P+ + L + ++A A + +R +++H V SG+ + V + L++
Sbjct: 431 LETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNL 490
Query: 240 YCKCKFVSRAWDLF 253
Y +C A+ LF
Sbjct: 491 YARCGRSKEAFSLF 504
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 31/206 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF Q+S + +++ GY L EA YH+M G++P ++ S+ +C
Sbjct: 97 RRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKA 156
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL---------------------- 173
+ +Q +H+Q K G S++ + N LI +Y L
Sbjct: 157 ALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLI 216
Query: 174 ------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+ A++IF M + P+ VT+ ++L A A DL K++H + ++G
Sbjct: 217 SRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMS 276
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF 253
++ +L+D Y KC + A ++F
Sbjct: 277 PDYIIEGSLLDLYVKCGVIVEALEIF 302
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R + + + + S++ GY EA + +M + G+ PD S +CA I
Sbjct: 400 RRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGI 459
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD-------- 177
+Q +HS+ G ++D + N L+N+Y+ C ++ D
Sbjct: 460 KAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMV 519
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+++F +M VK N T V+ ++A A D++ K++H V ++G
Sbjct: 520 SGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCT 579
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S E+ L+ Y KC + A F +M
Sbjct: 580 SETEVANALISLYGKCGSIEDAKMQFFEM 608
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISNPTIYTCNSIVR 98
MR+ +QIH+++ + ++ + + R +F I + T N +V
Sbjct: 461 AMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVS 520
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLAS 155
G+ L+ EA + +M G+ + F F S + A DI KQ+H+ IK G S
Sbjct: 521 GFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTS 580
Query: 156 DSFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRME 187
++ + N LI++Y C ++ EA+ +F +M+
Sbjct: 581 ETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMK 640
Query: 188 IENVKPNAVTLVNVLTA 204
E +KPN VT + VL A
Sbjct: 641 QEGLKPNDVTFIGVLAA 657
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 31/200 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VFS++ T N+++ + A + EM + G PD SL +CA D
Sbjct: 200 VFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGD 259
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK---------------- 181
+ KQLHS +K G++ D + +L+++Y C + + E K
Sbjct: 260 LNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVA 319
Query: 182 ------------IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+F +M V+PN T +L A ++ +++H ++GF S
Sbjct: 320 YGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESD 379
Query: 230 VELKTTLMDAYCKCKFVSRA 249
+ + L+D Y K ++ +A
Sbjct: 380 MYVSGVLIDMYSKYGWLDKA 399
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 32/196 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++++ I + NS++ GY+ EA Y+E+ + GL PD F S+ +C +
Sbjct: 88 RNVFEEMTHRDIVSWNSLISGYSANGYWDEALEIYYELRIAGLKPDNFTLSSVLPACGGL 147
Query: 139 YVEKQ---LHSQAIKFGLASDSFLHNTLINMY------------------------SSCW 171
K+ +H K G+ D + N L++MY ++
Sbjct: 148 LAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKMVVKDYVSWNTLI 207
Query: 172 C----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
C ++ +E+I++F M ++ +P+ +T+ +VL A RDL K VH + SG
Sbjct: 208 CGYCQMELFEESIQLFREM-VKRFRPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIE 266
Query: 228 SHVELKTTLMDAYCKC 243
V ++D Y KC
Sbjct: 267 FDVTASNIVIDTYAKC 282
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 113/289 (39%), Gaps = 60/289 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYHV-RLVFSQISNPTI 90
L C +R+L K +H +LR+ + FD C D R F +I
Sbjct: 241 LRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDS 300
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQ 147
+ N+++ GY + E + +M + L PD F +L AD + K++H
Sbjct: 301 VSWNTLINGYIQSRSYGEGVKLFKKMKMD-LKPDSITFVTLLSISTRLADTELGKEIHCD 359
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQPD--EA 179
K G SD + N L++MYS C W C+ D A
Sbjct: 360 LAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIAACVQAEDCTLA 419
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
++ +M E + P+ TL+ +L + R K VH C + GF S V + L++
Sbjct: 420 FRMISQMRNEELIPDMGTLLGILPICSLIAAKRQGKEVHACTFKFGFESTVPVGNALIEM 479
Query: 240 YCKC---KFVSRAW-DLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
Y KC K+ R + D+ K + W +A V G+ G A
Sbjct: 480 YSKCSNLKYCIRVFEDMKTKDVVTW--------TALVSAYGMYGEGKKA 520
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 37/230 (16%)
Query: 67 SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126
S++F + VF+++ + N+++ GY L E+ + EM V+ PD
Sbjct: 177 SMYFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREM-VKRFRPDLL 235
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW------------ 171
S+ ++C D+ K +H ++ G+ D N +I+ Y+ C
Sbjct: 236 TITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRI 295
Query: 172 -CLDQPD---------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
C D E +K+F +M+++ +KP+++T V +L+ R D K
Sbjct: 296 KCRDSVSWNTLINGYIQSRSYGEGVKLFKKMKMD-LKPDSITFVTLLSISTRLADTELGK 354
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+H + + GF S + + L+D Y KC V + +F V+ + WN
Sbjct: 355 EIHCDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWN 404
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
NS++R T+ L +A Y +M + PD + FPS+ +CA D + + + ++
Sbjct: 2 NSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVLE 61
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G D ++ N L++MY+ L + DEA++I
Sbjct: 62 IGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEI 121
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+Y + I +KP+ TL +VL A ++ + +H V++ G V + L+ Y K
Sbjct: 122 YYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFK 181
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQW 266
+ A +F KM+ +Y W
Sbjct: 182 FGRLMDAQRVFNKMVVK--DYVSW 203
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADYHVRL-----VFSQI 85
CLV LEKC +M+ LKQ HAQ+ T L F +H L VF QI
Sbjct: 8 CLVLLEKCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQI 67
Query: 86 SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEK 142
NPT+ N++++ + N A + +M+ L PD + P + K+C D K
Sbjct: 68 QNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGK 127
Query: 143 QLHSQAIKFGLASDSFLHNTLINMY 167
+H + K GL D ++ N+L+ MY
Sbjct: 128 MIHGYSSKLGLVFDIYVGNSLMAMY 152
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 122/261 (46%), Gaps = 52/261 (19%)
Query: 57 KQIHAQML-----RTSLFFDPCADYH--------VRLVFSQISNPTIYTCNSIVRGYTNK 103
+QIHA+++ + L +P D + +LVF ++ + +++ G +
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGLASDSFLH 160
EA L + +M +IP ++F S+ +C I + K QLH +K+GL+S++F+
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251
Query: 161 NTLINMYSSCWCL-------------DQ---------------PDEAIKIFYRMEIENVK 192
N L+ +YS L D+ D A+++F +M+++ +K
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ VT+ ++L+A A K++H V + G S + ++ +L+D Y KC + A +
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371
Query: 253 FV----KMLFPWN----NYGQ 265
F+ + + WN YGQ
Sbjct: 372 FLTTETENVVLWNVMLVAYGQ 392
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
+FS++ + NS++ G + A + +M + + PD SL +CA +
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
Y KQLHS IK G++SD + +L+++Y C+ ++
Sbjct: 330 GYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVA 389
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E+ IF +M+IE + PN T ++L L +++H V +SGF +
Sbjct: 390 YGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFN 449
Query: 230 VELKTTLMDAYCK 242
V + + L+D Y K
Sbjct: 450 VYVCSVLIDMYAK 462
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 55/235 (23%)
Query: 47 LEKCSTMREL---KQIHAQMLRT---------SLFFDPCADYH----VRLVFSQISNPTI 90
L C+++ L +QIH Q++++ S+ D A + R + ++ +
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GYT +L EA + EM QG+ D F S +CA I +Q+H+Q
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ 541
Query: 148 AIKFGLASD-----SFLHNTLINMYSSCWCLDQP-------------------------- 176
+ G + D + N LI +YS C ++
Sbjct: 542 SYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHG 601
Query: 177 --DEAIKIFYRMEIENVKPNAVTLVNVLTARARA---RDLRTVKRVHKCVDESGF 226
EA+ +F M+ + PN VT V + A R L + VHK ++ F
Sbjct: 602 YGSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEF 656
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 54/278 (19%)
Query: 29 INNNNINSQYQAHFCLVSLEKC---STMRELKQIHAQMLRTSLFFDPCADYHVRLV---- 81
+ I + Q + L E C ++ + K++HA++ ++ FD RL+
Sbjct: 1 MEERGIRANVQTYLWL--FEGCFNSGSLLDAKKLHARIFKSG--FDGEDVLGSRLIDIYL 56
Query: 82 -----------FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
F I + + N ++ G K L + + MI + + PD F S
Sbjct: 57 AHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFAS 116
Query: 131 LFKSC----ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------ 174
+ ++C A V +Q+H++ I G S + N LI++YS +D
Sbjct: 117 VLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK 176
Query: 175 ----------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
+ DEAI +F +M V P +VL+A + + +++H
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + G S + L+ Y + + A +F KM
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPT 89
L L+KC T ELKQIHA+ML++ L DP A Y + F+ P
Sbjct: 15 LSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPD 74
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHS 146
+ N ++RG + + + L YH M+ + + FP L K+C+++ Q+H+
Sbjct: 75 TFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHA 134
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
KFG D + N+LIN Y+ A +F R++ +P+AV+ +V+
Sbjct: 135 HITKFGYGHDIYAVNSLINSYA---VTGNFKHAHLLFDRIQ----EPDAVSWNSVIKGYV 187
Query: 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+A ++ + + + E ++ TT++ Y + A LF +M
Sbjct: 188 KAGEMDMALTLFRKMPEK---NNAISWTTMISGYVQAGMNKEALQLFHEM 234
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 121/276 (43%), Gaps = 54/276 (19%)
Query: 41 HFCLVSLEK-CSTMRELK---QIHAQMLRTSLFFDPCA-----DYHVRL--------VFS 83
HF S+ K CS + + K Q+HA +L++ D A + + VFS
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIY--- 139
+I + + S++ G++ EA + EM+ Q + P+ F+F S F +C+ +
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPD 318
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSC----------WCLDQPD------------ 177
+Q+H IKFGL SD F +L +MY+ C + +++PD
Sbjct: 319 CGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFA 378
Query: 178 ------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
E+ F +M + PN VT++++L A + L +VH + + GF +
Sbjct: 379 SVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIP 438
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM-----LFPWNN 262
+ +L+ Y KC ++ A +F + + WN
Sbjct: 439 VCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNT 474
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTI 90
+ CS++R L ++IH ML + D H+ R +F + +
Sbjct: 105 INACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNV 164
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ S++ GY+ A Y +M+ G IPD F F S+ KSC+ D + +QLH+
Sbjct: 165 VSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAH 224
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---------------- 191
+K +D N LI+MY+ Q +AI +F R+ I+++
Sbjct: 225 VLKSEFGADLIAQNALISMYTK---FSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281
Query: 192 ----------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+PN + +A ++ + +++H + G S + +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L D Y KC F+ A +F + L WN
Sbjct: 342 LCDMYAKCGFLESARTVFYHIEKPDLVAWN 371
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF I P + N+I+ G+ + + E+ F+ +M GL+P+ SL +C++
Sbjct: 356 RTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEP 415
Query: 139 YVEK---QLHSQAIKFGLASDSFLHNTLINMYSSC---------------------W--- 171
+ Q+HS +K G D + N+L++MYS C W
Sbjct: 416 VMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTL 475
Query: 172 ---CL--DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
CL +Q E +++ M +KP+ VTL NVL + + ++H + +SG
Sbjct: 476 LTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + L++ Y KC + A +F
Sbjct: 536 NLDISVSNALINMYTKCGSLECARKMF 562
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 33/168 (19%)
Query: 70 FDPCADYHVRL-VFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C++ + L VF I N I + N+++ +N E M + PD
Sbjct: 447 YSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVT 506
Query: 128 FPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
++ S I V Q+H +K GL D + N LINMY+ C L+
Sbjct: 507 LTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG 566
Query: 175 QPD------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
PD EA ++F M VKPN +T V +LTA
Sbjct: 567 NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 17/155 (10%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
LVS + ++ QIH ++++ L D C R +F I NP I
Sbjct: 511 LVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDI 570
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQL---HS 146
+ +S++ GY EAF + M G+ P+ F + +C+ I VE+ L +
Sbjct: 571 ISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRT 630
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181
+ ++ + ++++ + CLD ++ I+
Sbjct: 631 MQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIR 665
>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+VF I + + +++ GYT++ + A + EM++ G+ + ++CA I
Sbjct: 169 VVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIG 228
Query: 140 VE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------- 177
+ +Q+H+ IK G SD + N++++MY C CL + +
Sbjct: 229 SQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIA 288
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E IF +ME E PN T +++ A A A L+ ++VH + G +
Sbjct: 289 GYERSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGN 348
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+EL L+D Y KC + + F +M
Sbjct: 349 LELANALIDMYAKCGNIIDSQKNFSEM 375
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 38/231 (16%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFM 127
+F+ R +F ++ + +++ GYT+ N + +A+ + +M+ G P+ F
Sbjct: 54 YFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFT 113
Query: 128 FPSLFKSCAD---IYVEKQLHSQAIKFGLASD-SFLHNTLINMYSSC------------- 170
S+ K+C ++ + +H AIK ++ N L++MY+SC
Sbjct: 114 ISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHD 173
Query: 171 --------WCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
W + A++IF M ++ V N ++ + A A
Sbjct: 174 IKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFG 233
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+++H V + GF S + + +++D YC+C +S A F M L WN
Sbjct: 234 RQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWN 284
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 41/219 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+F ++++ + N I+RGYTN L EA FY+ M +G+ D F FP + K+C +
Sbjct: 80 MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLA 139
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV------ 191
+ V +++H + IK G D ++ N LI+MY ++ + K+F M + ++
Sbjct: 140 LMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAE---KVFDEMPVRDLVSWNSM 196
Query: 192 -------------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
K + +++ L A + LR+ +H V S
Sbjct: 197 VSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSEL 256
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ ++T+L+D Y KC V A +F K + WN
Sbjct: 257 ELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWN 295
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 20/201 (9%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + NS+V GY + + + EM+ G DRF S +C+ +
Sbjct: 181 VFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHC 240
Query: 141 EK---QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI--------- 188
+ ++H Q I+ L D + +LI+MY C +D + Y I
Sbjct: 241 LRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG 300
Query: 189 ----ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+ V P+ +T++N+L + +++ L K +H F ++ L+T L+D Y KC
Sbjct: 301 MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCG 360
Query: 245 FVSRAWDLFVKM----LFPWN 261
+ A +F +M + WN
Sbjct: 361 ELKLAEHVFNQMNEKNMVSWN 381
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 67/265 (25%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFD------------PCA--DYHVRLVFSQISNPTIY 91
S+E C +R +IH Q++R+ L D C DY R VF++I + I
Sbjct: 236 SIEHC--LRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAER-VFNRIYSKNIV 292
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQA 148
N+++ G + +IPD +L SC+ + K +H A
Sbjct: 293 AWNAMIGGMQEDD---------------KVIPDVITMINLLPSCSQSGALLEGKSIHGFA 337
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAI 180
I+ L L++MY C L +Q EA+
Sbjct: 338 IRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEAL 397
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
K+F + E +KP+A+T+ +VL A A K++H + + G S+ + ++ Y
Sbjct: 398 KMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMY 457
Query: 241 CKCKFVSRAWDLFVKM----LFPWN 261
KC + A + F M + WN
Sbjct: 458 AKCGDLQTAREFFDGMVCKDVVSWN 482
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
SD+F+ N +I Y++ EAI +YRME E ++ + T V+ A L
Sbjct: 87 SDTFIWNVIIRGYTNNGLFQ---EAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVG 143
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
++VH + + GF V + L+D Y K F+ A +F +M L WN+
Sbjct: 144 QKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNS 195
>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 646
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F ++ + T N++V G TN E+ F+ +M +G+ PD F S+F+ CA
Sbjct: 126 ARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAG 185
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
D+ +Q+H+ ++ GL D + ++L +MY C CL + +
Sbjct: 186 LRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI 245
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
A++ F M V + VT V+ +++ + L +++H V ++G
Sbjct: 246 IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGV 305
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
V + T L+ Y +C + + +F F + + +SA + G G A +
Sbjct: 306 DKVVPVMTCLVHMYSRCGCLGDSERVF----FGYCGSDTFLLSAMISAYGFHGHGQKAIE 361
Query: 287 I 287
+
Sbjct: 362 L 362
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 47/202 (23%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPC-----ADYHVR--------LVFSQISNPTIYTC 93
C+ +R++ +Q+HA ++R+ L D C A ++R V + + +I +C
Sbjct: 183 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 242
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
N+I+ G T A ++ M G+ D F S SC+D+ +Q+H Q +K
Sbjct: 243 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 302
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
G+ + L++MYS C CL + +AI++
Sbjct: 303 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 362
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F +M +P+ VT + +L A
Sbjct: 363 FKQMMNGGAEPSDVTFLALLYA 384
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 33/157 (21%)
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
S+ N YTC ++ GY + + E+ QG+ P+ F F SL K+CA+ +
Sbjct: 204 SECRNVVSYTC--LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 261
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PDE----------- 178
QLH+Q +K D F+ + L++MY C L+Q P E
Sbjct: 262 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 321
Query: 179 -------AIKIFYRMEIENVKPNAVTLVNVLTARARA 208
AIKIF RM VKPNA+T +++LT + A
Sbjct: 322 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
+++ G + + EA + M + G +P +F F S ++CA I + KQ+H A+K
Sbjct: 10 TAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALK 69
Query: 151 FGLASDSFLHNTLINMYSSCW-------------CLDQP---------------DEAIKI 182
FG+ S+ F+ + L +MYS C C D+ +EA+
Sbjct: 70 FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLA 129
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M E V + L + L A + + + VH V + GF S + + L D Y K
Sbjct: 130 FKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK 189
Query: 243 CKFVSRAWDLF 253
+ A ++F
Sbjct: 190 AGDMESASNVF 200
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 46/245 (18%)
Query: 65 RTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
+ FD C VF ++ + +++ GY+ EA L + +MI + + D
Sbjct: 88 KCGAMFDACK------VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTID 141
Query: 125 RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYS------------- 168
+ + S +C + + +HS +K G SD F+ N L +MYS
Sbjct: 142 QHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG 201
Query: 169 ---------SCWCL-------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
S CL +Q ++ + +F + + ++PN T +++ A A L
Sbjct: 202 IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 261
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN----YG 264
++H V + F + + L+D Y KC + +A F ++ P WN+ +G
Sbjct: 262 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 321
Query: 265 QWAMS 269
Q +
Sbjct: 322 QHGLG 326
>gi|449440993|ref|XP_004138268.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Cucumis sativus]
gi|449523770|ref|XP_004168896.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Cucumis sativus]
Length = 549
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 44/242 (18%)
Query: 56 LKQIHAQMLRTSLFFDP-CADYHVRL------------VFSQISNPTIYTCNSIVRGYTN 102
LK +H ++L T DP C V VF +I +P + NSI+ G+ +
Sbjct: 123 LKFVHGRVLVTGFGLDPICCSALVTAYSNLDLIEEASKVFGRIQHPDLVMWNSIICGFGS 182
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFL 159
++ L + M G +PD + + A+ + K +H +K S+ +
Sbjct: 183 CGYWNQGLLLFSRMRNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCNFDSNEHV 242
Query: 160 HNTLINMYSSCWCLD----------QPD------------------EAIKIFYRMEIENV 191
+ L++MYS C C+D QPD +A+ F R+ ++
Sbjct: 243 ASALVSMYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYSQAGDFRKAMLFFQRLNMQGK 302
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
K +++ + ++L A A++ ++R +H V G S+ + ++L+D Y KC ++S
Sbjct: 303 KMDSILIASILAATAQSTNIRHGIEIHGYVLRQGIESNEMISSSLIDMYSKCGYLSLGIR 362
Query: 252 LF 253
+F
Sbjct: 363 VF 364
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 54/257 (21%)
Query: 52 TMRELKQIHAQMLRTSLFFDPCADYHVRLV---------------FSQISNPTIYTCNSI 96
T+ K++HA + ++ L DP Y R+V F + N ++Y NSI
Sbjct: 18 TLLRTKELHAFITKSHLASDPF--YATRIVKLYSINAKLGYARHLFDKTPNRSVYLWNSI 75
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQAIKFGL 153
+R Y +A + M PD F + + ++C++ + + L H + + G
Sbjct: 76 IRAYAKAYKFRDALSLFLTMSGTETSPDNFTYSCIIRACSENHHREWLKFVHGRVLVTGF 135
Query: 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME-------------------------- 187
D + L+ YS+ LD +EA K+F R++
Sbjct: 136 GLDPICCSALVTAYSN---LDLIEEASKVFGRIQHPDLVMWNSIICGFGSCGYWNQGLLL 192
Query: 188 ---IENVK--PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+ N+ P+ T+V V + A L T K +H + F S+ + + L+ Y +
Sbjct: 193 FSRMRNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCNFDSNEHVASALVSMYSR 252
Query: 243 CKFVSRAWDLFVKMLFP 259
C + A+ +F +L P
Sbjct: 253 CNCMDSAYLVFSSLLQP 269
>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
Length = 631
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 42/187 (22%)
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD---------- 174
F SL + C + +++H++ + GL D FL N LI MY C ++
Sbjct: 56 FASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAVFEKIE 115
Query: 175 -------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
+ D A+ F +M E V+PN VT V++L A A ARD++
Sbjct: 116 SPNSVVSWTAMISGFALHGREDLALDFFRKMVAEGVRPNEVTFVSILGACAAARDVKHGT 175
Query: 216 RVHKCVDESGFW-SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSA 270
+H+ V+ S F S++ + T L+D Y KC A +F KM L WN AM
Sbjct: 176 AIHELVESSEFGRSYLSVGTALIDMYGKCGRPELASRVFEKMERRDLVVWN-----AMIT 230
Query: 271 TVGPQGL 277
QGL
Sbjct: 231 VCSQQGL 237
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 125/284 (44%), Gaps = 54/284 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNP-T 89
L++C R L ++IHA+++ T L D H+ R VF +I +P +
Sbjct: 60 LQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAVFEKIESPNS 119
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ + +++ G+ A F+ +M+ +G+ P+ F S+ +CA D+ +H
Sbjct: 120 VVSWTAMISGFALHGREDLALDFFRKMVAEGVRPNEVTFVSILGACAAARDVKHGTAIHE 179
Query: 147 --QAIKFGLASDSFLHNTLINMYSSC--------------------W------CLDQP-- 176
++ +FG + S + LI+MY C W C Q
Sbjct: 180 LVESSEFGRSYLS-VGTALIDMYGKCGRPELASRVFEKMERRDLVVWNAMITVCSQQGLD 238
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE--LKT 234
++A+++F M++E P+ VTLV L A + L K++H+ + ++G S ++ L T
Sbjct: 239 EQALRLFRVMDLEGHTPDEVTLVAALEACSNLNSLAAGKKLHELILDAGLDSSIKMVLAT 298
Query: 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLV 278
L++ Y + + A +F KM WN A+ A G V
Sbjct: 299 ALVNMYGRYGQLEDALRVFEKMNH-WNLVAWTALIAAFAQHGDV 341
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 49 KCSTMRELKQIHAQM-LRTSLFFDPCADYHVRL--------VFSQISNPTIYTCNSIVRG 99
+ M +Q+ +M +R + ++ D + RL +FSQ+ N I + +++
Sbjct: 88 RTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIAC 147
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASD 156
Y+ EA ++EM G+ PD ++ +CA + + K++H A++ G D
Sbjct: 148 YSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLD 207
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
++ + LI+MY+ C LD+ +EA+ +F RM+
Sbjct: 208 VYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQR 267
Query: 189 ENVKPNAVTLVNVLTA 204
E +KPN VT ++VL A
Sbjct: 268 EKIKPNGVTFISVLGA 283
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 12/190 (6%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++S ++ +++ + A + EM V+ M +
Sbjct: 63 EARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDG-YSRLR 121
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
++ + L SQ D T+I YS Q EA+ +F M+ + P+ V
Sbjct: 122 NVESAELLFSQMPN----RDIISWTTMIACYSQN---KQFREALAVFNEMQTNGIDPDEV 174
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T+ +++A A L K +H E GF V + + L+D Y KC + ++ +F K+
Sbjct: 175 TMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKL 234
Query: 257 ----LFPWNN 262
LF WN+
Sbjct: 235 RKKNLFCWNS 244
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 44/251 (17%)
Query: 50 CSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSI 96
C T+R+L Q+HA + T+L A + LVF NP + +
Sbjct: 11 CKTLRQLNQLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVL 70
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGL 153
++ + + EA L Y +M+ F+FPS+ ++CA D+++ ++H + IK G
Sbjct: 71 IKCHVWSHAFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHGRIIKCGF 130
Query: 154 ASDSFLHNTLINMYSSCWCL----------------------------DQPDEAIKIFYR 185
+D F+ +L+ +Y CL + +EA+++F
Sbjct: 131 DNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRL 190
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
+ E VK + V +++V A ++ L+ K +H + + L +L++ Y C
Sbjct: 191 LVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDD 250
Query: 246 VSRAWDLFVKM 256
+ A +FV M
Sbjct: 251 LYSAERIFVNM 261
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 31/211 (14%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
++F+ I + NSI+ G+ EA +M + L +F S ++CAD+
Sbjct: 458 MIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMYLNCLKITDVVFLSAIQACADMV 517
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL----------------------- 173
K LH + I +G+ D ++ L +MY+ C L
Sbjct: 518 CLEKGKWLHHKLIMYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMIS 577
Query: 174 -----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ D AI F +M +KPN +T +N+L+A + + + K + + G
Sbjct: 578 GYGMHGRIDAAITFFNQMVELGIKPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGVEP 637
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
E L+D + V+ A+ + M FP
Sbjct: 638 SSEHFACLVDLLSRAGDVNGAYKIINSMPFP 668
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 109/286 (38%), Gaps = 53/286 (18%)
Query: 47 LEKCSTM---RELKQIHAQMLRTSLFF-DPCAD-------------YHVRLVFSQISNPT 89
L+ CS + RE K IH L+ + F D C + V I
Sbjct: 308 LKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGERN 367
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHS 146
+ + N+++ + L EA + + +M +GL+ D F S +C ++ + +Q+H
Sbjct: 368 VVSWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHG 427
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DE 178
AIK + + F+ N LI MYS C D E
Sbjct: 428 YAIKRCILGE-FVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIE 486
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
AI + +M + +K V ++ + A A L K +H + G + ++T L D
Sbjct: 487 AIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETALTD 546
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
Y KC + A +F M + W SA + G+ GR A
Sbjct: 547 MYAKCGDLRTAEGVFHSM--SEKSVVSW--SAMISGYGMHGRIDAA 588
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 31/171 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF I + + +SI+ Y +K +EA + ++ + + D + S+ ++C+ +
Sbjct: 154 RKVFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACSKL 213
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC------------------------- 170
+ K +H ++ + + L N+LI MYSSC
Sbjct: 214 GILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMI 273
Query: 171 WCLDQPD---EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218
+C ++ EA +IF +M V+PN +T++ VL + + LR K +H
Sbjct: 274 YCYNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIH 324
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 96/254 (37%), Gaps = 49/254 (19%)
Query: 48 EKCSTMRELK---QIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIY 91
E CS + LK IH ++R + + C D Y +F ++N T
Sbjct: 208 EACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFI 267
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQA 148
+ S++ Y EAF + +M+ + P+ + KSC+ + K +H A
Sbjct: 268 SWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYA 327
Query: 149 IKFGLA-SDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
+K G+ D L LI +Y+ C L +EA
Sbjct: 328 LKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEA 387
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ +F +M+ + + +L + ++A L+ +++H + +K L+
Sbjct: 388 LVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILGEF-VKNALIGM 446
Query: 240 YCKCKFVSRAWDLF 253
Y +C F A+ +F
Sbjct: 447 YSRCGFSDSAYMIF 460
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 33/157 (21%)
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IY 139
S+ N YTC ++ GY + + E+ QG+ P+ F F SL K+CA+ +
Sbjct: 269 SECRNVVSYTC--LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 326
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PDE----------- 178
QLH+Q +K D F+ + L++MY C L+Q P E
Sbjct: 327 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 386
Query: 179 -------AIKIFYRMEIENVKPNAVTLVNVLTARARA 208
AIKIF RM VKPNA+T +++LT + A
Sbjct: 387 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 423
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 102/249 (40%), Gaps = 44/249 (17%)
Query: 49 KCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTIYTCNS 95
K +R KQ+HA ++ + C + H +F + + + +
Sbjct: 17 KTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTA 76
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFG 152
++ G + + EA + M + G +P +F F S ++CA I + KQ+H A+KFG
Sbjct: 77 MISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFG 136
Query: 153 LASDSFLHNTLINMYSSCW-------------CLDQP---------------DEAIKIFY 184
+ S+ F+ + L +MYS C C D+ +EA+ F
Sbjct: 137 IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFK 196
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
+M E V + L + L A + + + VH V + GF S + + L D Y K
Sbjct: 197 KMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAG 256
Query: 245 FVSRAWDLF 253
+ A ++F
Sbjct: 257 DMESASNVF 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 46/245 (18%)
Query: 65 RTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
+ FD C VF ++ + +++ GY+ EA L + +MI + + D
Sbjct: 153 KCGAMFDACK------VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTID 206
Query: 125 RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYS------------- 168
+ + S +C + + +HS +K G SD F+ N L +MYS
Sbjct: 207 QHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG 266
Query: 169 ---------SCWCL-------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
S CL +Q ++ + +F + + ++PN T +++ A A L
Sbjct: 267 IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 326
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN----YG 264
++H V + F + + L+D Y KC + +A F ++ P WN+ +G
Sbjct: 327 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 386
Query: 265 QWAMS 269
Q +
Sbjct: 387 QHGLG 391
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 66/235 (28%)
Query: 51 STMRELKQIHAQMLRTSLFFD--------PCA--------DYHVRLVFSQISNPTIYTCN 94
++++ L Q+H +LR+ F D C D+ ++ VFS I NP ++ N
Sbjct: 44 TSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALK-VFSSIPNPNVFIWN 102
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKF 151
+++G N +A FY M++ P++F +P+LFK+C+ + +Q+H +K
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161
Query: 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
G+ SD + + I+MY+S + ++A K+FY E
Sbjct: 162 GIGSDVHIKSAGIHMYAS---FGRLEDARKMFYSGE------------------------ 194
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
S V T++D Y KC + A LF +M P N G W
Sbjct: 195 ----------------SDVVCWNTMIDGYLKCGVLEAAKGLFAQM--PVKNIGSW 231
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 32/252 (12%)
Query: 52 TMRELKQIHAQMLRTSLFFD---PCADYHVRLVFSQI--------SNPTIYTC-NSIVRG 99
++E +QIH +++ + D A H+ F ++ S + C N+++ G
Sbjct: 147 AVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDG 206
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159
Y + A + +M V+ + M L K ++ ++L + + D
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKG-GNLGDARKLFDEMSE----RDEIS 261
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+++++ Y S + EA++IF +M+ E +P L +VL A + + + VH
Sbjct: 262 WSSMVDGYISA---GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQ 275
+ + L T L+D Y KC + W++F +M +F WN A +G
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWN--------AMIGGL 370
Query: 276 GLVGRHSTAHQI 287
+ GR A ++
Sbjct: 371 AIHGRAEDALEL 382
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 55/252 (21%)
Query: 57 KQIHAQMLRTS-------------LFF------DPCADYHVRLVFSQISNPTIYTCNSIV 97
KQ+HA+ LR + L F P Y V ++ + +P ++ N+++
Sbjct: 38 KQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDPFSLNTVL 97
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLA 154
R + + A + + PD +P L ++CA + + LH++A K GL
Sbjct: 98 RIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLV 154
Query: 155 SDSFLHNTLINMYSSCWCLD------------------------------QPDEAIKIFY 184
S F+ N+L+++Y +C + +P+E + +F
Sbjct: 155 SLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFR 214
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244
M P+ T+V+VLTA A L +RVH V + G + L+D Y KC
Sbjct: 215 EMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCG 274
Query: 245 FVSRAWDLFVKM 256
V A +F +M
Sbjct: 275 GVDDARKMFGEM 286
>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 42/280 (15%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
F DP A +HV F Q+ + +++ G + F+ M + L P+R
Sbjct: 198 FDDPAAAFHV---FDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQRENLRPNRVTL 254
Query: 129 PSLFKSCADI----YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
S+ +C ++ + K++H + + G SD L + MY C +
Sbjct: 255 LSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRCGSVSLSRLLFETSK 314
Query: 177 --------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
EA+ + +M E +PN+VTL+ V++A + L+
Sbjct: 315 VRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSACTHSASLKIAST 374
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
VH + + GF SH+ L L+D Y KC + A ++F + N + S+ + G
Sbjct: 375 VHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVF----YELNEKDLVSWSSMINAYG 430
Query: 277 LVGRHSTAHQISGPCPKKAHK---LFFFSMLKKVHVPGVL 313
L G S A +I K H+ + F ++L + G++
Sbjct: 431 LHGHGSEALEIFKGMIKAGHEVDGMAFLAVLSACNHAGLV 470
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 51/203 (25%)
Query: 97 VRGYTNKNLHHEAFLFY----HEMIVQGLIPDRFMFPSLFKSCA----DIYVEKQLHSQA 148
++G + LH EA Y H + G + PS+ K+C+ + QLH
Sbjct: 17 LKGLVSGQLHDEALRLYKLNIHPLGTNGFTA---ILPSVIKACSFQQEPFLLGAQLHCLC 73
Query: 149 IKFGLASDSFLHNTLINMYS---------------------------SCWCLDQ-PDEAI 180
K G D+ + N+LI+MY+ +C+C D EA+
Sbjct: 74 FKSGADRDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYCQDGLLSEAM 133
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARAR-------ARDLRTVKRVHKCVDESGFWSHVELK 233
K+ M P + + ++L R AR L + V + + ES V L
Sbjct: 134 KLLKEMYFYGFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQES-----VLLS 188
Query: 234 TTLMDAYCKCKFVSRAWDLFVKM 256
T L+D Y K + A+ +F +M
Sbjct: 189 TALLDMYLKFDDPAAAFHVFDQM 211
>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 607
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 36/207 (17%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEK--QLHSQA 148
T +S++ G+ EAF Y +M +G P+ + S+ + C+ +++K ++H A
Sbjct: 86 TWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYA 145
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPD-----------------------------EA 179
IK L ++ F+ +L+++Y+ C C+ + + A
Sbjct: 146 IKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRA 205
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
IK F M E V+ N T ++LTA D +VH C+ SGF +++ +++ L+D
Sbjct: 206 IKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDM 265
Query: 240 YCKCKFVSRAWDLFVKM----LFPWNN 262
Y KC+ ++ A + M + WN+
Sbjct: 266 YAKCRDLNSANRVLENMEVNDVVSWNS 292
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQAIK 150
NS++ G + EA ++EM + + D + +PS+ F S DI K H IK
Sbjct: 291 NSMIVGCVREGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIK 350
Query: 151 FGLASDSFLHNTLINMYSSCWCLD--------QPD--------------------EAIKI 182
G + + ++N L++MY+ LD PD +AIK+
Sbjct: 351 TGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSYEDAIKL 410
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F M I V P+ + L +VL+A A ++VH + +SG S + + +L+ Y K
Sbjct: 411 FCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVHATILKSGLCSSLSIDNSLVTMYAK 470
Query: 243 CKFVSRAWDLFVKM 256
C + A +F M
Sbjct: 471 CGGIEDANYVFDSM 484
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 112/264 (42%), Gaps = 41/264 (15%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
T +++ GY++ A + +M +G+ ++F FPS+ +C D Q+H
Sbjct: 188 TWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCI 247
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAI 180
++ G ++ F+ + L++MY+ C L+ + EA+
Sbjct: 248 VRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEAL 307
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M ++K + T +VL + A +D+++ K H + ++GF ++ + L+D Y
Sbjct: 308 SLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVNNALVDMY 367
Query: 241 CKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA------HQISGPCPKK 294
K + A+ +F +M P + W ++ V G + A +I+G CP +
Sbjct: 368 AKQGNLDYAFTVFNQM--PDKDVVSW--TSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQ 423
Query: 295 AHKLFFFSMLKKVHVPGVLIQVHV 318
S ++ V QVH
Sbjct: 424 IVLASVLSACAELTVTEFGQQVHA 447
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF+Q+ + + + S+V GY+ + +A + +M + G+ PD+ + S+ +CA++ V
Sbjct: 379 VFNQMPDKDVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTV 438
Query: 141 E---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+Q+H+ +K GL S + N+L+ MY+ C + ++A +F M+I +V
Sbjct: 439 TEFGQQVHATILKSGLCSSLSIDNSLVTMYAKCGGI---EDANYVFDSMQIRDVISWTAL 495
Query: 198 LVNVLTARARARD 210
+V R +D
Sbjct: 496 IVG-YAQNGRGKD 507
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA +++ +M+ E +PN TL ++L +R L+ +R+H ++ ++V + T+L+
Sbjct: 102 EAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLV 161
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
D Y KC+ +S A +F +M+ N+ W
Sbjct: 162 DLYAKCECISEAEYIF-EMVADSKNHATW 189
>gi|297791795|ref|XP_002863782.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309617|gb|EFH40041.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 590
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 115/250 (46%), Gaps = 45/250 (18%)
Query: 54 RELKQIHAQMLRT-------SLFFDPCADY-------HVRLVFSQISNPTIYTCNSIVRG 99
R + Q+HA ++ + S+ D A Y + R VF Q+ ++ NS++
Sbjct: 23 RHIAQVHAFVITSGNLLNGSSISRDLVALYGRIGEISYARKVFDQLPQRSVSVYNSMIVV 82
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-ADIYVEK--QLHSQAIKFGLASD 156
Y+ N +E Y +MI + + PD F K+C + + +EK + S+A++FG +D
Sbjct: 83 YSRGNNPNEVLKLYDQMISERVKPDSSTFTITIKACLSGMALEKGEAVWSKAVEFGYKND 142
Query: 157 SFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRMEI 188
F+ ++++N+Y C +++ + +A++ + M+
Sbjct: 143 VFVCSSVLNLYMKCGKMNEAEVLFRKMTKRDVICWTTMVTGFAQGGKSMKAVEFYREMQN 202
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
E + V ++ +L A D + + VH + +G + ++T+L+D Y K F+
Sbjct: 203 EGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTGLPMNTVVETSLVDMYAKVGFIEV 262
Query: 249 AWDLFVKMLF 258
A+ +F +M+F
Sbjct: 263 AFRMFSRMMF 272
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 50/276 (18%)
Query: 58 QIHAQMLRTSLFFDP-------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
QIHA ++++ L FD D+ R VF + + + S++ GY
Sbjct: 80 QIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRV 139
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+ + +M+ G+ P+ F ++ K+C D+ + + H + G S+ +
Sbjct: 140 GKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA 199
Query: 161 NTLINMYSS--------------------CWCL--------DQPDEAIKIFYRMEIE-NV 191
+ LI+M+ CW D DEA++ FY M+ + +
Sbjct: 200 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 259
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P+ T VLTA L+ K VH V +GF +V ++++L+D Y KC V +
Sbjct: 260 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 319
Query: 252 LFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
+F +M P N W SA +G G + QI
Sbjct: 320 IFDRM--PIKNSVSW--SALLGGYCQNGDFKSVIQI 351
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 38/263 (14%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSL 131
CA R +F ++ P SI+ T + EA F++ M G+ PD F F ++
Sbjct: 210 CALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV 269
Query: 132 FKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188
+C ++ KQ +H++ I G + + ++L++MY C + E+ +IF RM I
Sbjct: 270 LTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVG---ESQRIFDRMPI 326
Query: 189 ENV---------------------------KPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+N K + +L A +R K VH
Sbjct: 327 KNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQY 386
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRH 281
G W V +++ L+D Y KC + A +F +M P N W ++ +G GR
Sbjct: 387 IRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQM--PVRNLITW--NSMIGGFAQNGRG 442
Query: 282 STAHQISGPCPKKAHKLFFFSML 304
A +I K+ K + S +
Sbjct: 443 EEALRIFNQMVKEGIKPDYISFI 465
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 32/165 (19%)
Query: 127 MFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMY---------------- 167
++ SL ++C + Q+H+ IK GL D F+ N+L+ +Y
Sbjct: 61 LYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDG 120
Query: 168 -------------SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
S + +P ++++F++M V+PNA TL V+ A + DL+
Sbjct: 121 LFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 180
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ H V GF S+ + + L+D + + + A LF ++L P
Sbjct: 181 RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEP 225
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 51 STMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSI 96
+ +R+ K++H Q +R + D C +Y + +F Q+ + T NS+
Sbjct: 374 AAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEY-AQTIFDQMPVRNLITWNSM 432
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ G+ EA +++M+ +G+ PD F + +C+
Sbjct: 433 IGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 472
>gi|255550217|ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544645|gb|EEF46161.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1439
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 117/274 (42%), Gaps = 53/274 (19%)
Query: 41 HFCLVS-LEKCSTMRE----LKQIHAQMLRTSLFFD-----PCADYHVR--------LVF 82
HF L S L+ CS++ E KQIH + +TS+ + D + R +F
Sbjct: 1089 HFTLASVLKACSSLTEGLFLSKQIHVYVTKTSIIAENFVSTALIDVYSRSGLMAEAEFIF 1148
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY--- 139
+ + N+++ GY H + + M +G D + + K+C +
Sbjct: 1149 ENKNKFDLAAWNAMMFGYIICGDHDKGLKLFAFMHEKGESCDEYTLATAAKACGSLVRLE 1208
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W------CL 173
KQ+H+ AIKFGL SD FL + +++MY C W C+
Sbjct: 1209 QGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNMEDGHLLFDNIPVPDDVAWTIMISGCV 1268
Query: 174 DQPDE--AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
+ DE A+ ++ +M + + P+ T ++ A + L +++H V + S
Sbjct: 1269 ENGDEDRALSVYRQMRLSGILPDEYTFATLIKASSCLTALEQGRQIHANVIKLECASDPF 1328
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ T+L+D Y KC + A+ LF +M + WN
Sbjct: 1329 VGTSLIDMYAKCGIIEDAYCLFRRMDVRNIVVWN 1362
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 44/196 (22%)
Query: 53 MRELKQIHAQMLRTSLFFD-----PCADYHVR--------LVFSQISNPTIYTCNSIVRG 99
+ + KQIHA ++ L D D +++ L+F I P ++ G
Sbjct: 1207 LEQGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNMEDGHLLFDNIPVPDDVAWTIMISG 1266
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASD 156
A Y +M + G++PD + F +L K+ + + +Q+H+ IK ASD
Sbjct: 1267 CVENGDEDRALSVYRQMRLSGILPDEYTFATLIKASSCLTALEQGRQIHANVIKLECASD 1326
Query: 157 SFLHNTLINMYSSC------WCL----------------------DQPDEAIKIFYRMEI 188
F+ +LI+MY+ C +CL +EA+ +F M+
Sbjct: 1327 PFVGTSLIDMYAKCGIIEDAYCLFRRMDVRNIVVWNAMLVSLAQHGHGEEALHLFKVMQS 1386
Query: 189 ENVKPNAVTLVNVLTA 204
++KP+ VT + VL+A
Sbjct: 1387 HSIKPDKVTFIGVLSA 1402
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 39/262 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F + + N +++ Y L EA F+ + GL PD + +
Sbjct: 863 EARGLFDIMQERDVVLWNVMLKAYVEMGLVKEALSFFSQFHQSGLRPDDASMRCVVSGIS 922
Query: 137 DI-------YVEKQLHSQAIKFGLASDS---FLHNTLINMY---SSCWCLDQPDEAIKIF 183
++ Y+E Q+ + A K D+ + N ++ Y + W A+ F
Sbjct: 923 EVGYDTGRRYIE-QIQAYATKLFFCDDNTDVVMWNKKLSEYLQAGAFWA------AVDCF 975
Query: 184 YRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
M + VK + VTLV VL A DL K +H +SGF S V + +L++ Y K
Sbjct: 976 INMLTSSHVKYDNVTLVVVLAAATGTGDLMLGKLIHGMTLKSGFDSVVSVANSLINMYSK 1035
Query: 243 CKFVSRAWDLFVKM----LFPWNN----YGQWAMSAT-----VG--PQGLVGRHSTAHQI 287
FVS A +F M L WN+ Y Q + VG GL H T +
Sbjct: 1036 MGFVSLAHTVFTGMNELDLISWNSMISCYAQNGLQKESVNLLVGLLRDGLQPDHFTLASV 1095
Query: 288 SGPCPKKAHKLFFFSMLKKVHV 309
C LF + K++HV
Sbjct: 1096 LKACSSLTEGLF---LSKQIHV 1114
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 134 SCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193
S +++++ K +H+ I GL SD FL N LI MYS C + A ++F R ++
Sbjct: 716 STSNLHLGKCIHANIITSGLTSDRFLANNLITMYSKCGSVSS---ARQLFDRTPDRDL-- 770
Query: 194 NAVTLVNVLTARARARD 210
VT VL+A AR+ +
Sbjct: 771 --VTWNAVLSAYARSDE 785
>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 704
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F ++ + T N++V G TN E+ F+ +M +G+ PD F S+F+ CA
Sbjct: 192 ARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAG 251
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
D+ +Q+H+ ++ GL D + ++L +MY C CL + +
Sbjct: 252 LRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI 311
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
A++ F M V + VT V+ +++ + L +++H V ++G
Sbjct: 312 IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGV 371
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
V + T L+ Y +C + + +F F + + +SA + G G A +
Sbjct: 372 DKVVPVMTCLVHMYSRCGCLGDSERVF----FGYCGSDTFLLSAMISAYGFHGHGQKAIE 427
Query: 287 I 287
+
Sbjct: 428 L 428
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 47/202 (23%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPC-----ADYHVR--------LVFSQISNPTIYTC 93
C+ +R++ +Q+HA ++R+ L D C A ++R V + + +I +C
Sbjct: 249 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 308
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
N+I+ G T A ++ M G+ D F S SC+D+ +Q+H Q +K
Sbjct: 309 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 368
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
G+ + L++MYS C CL + +AI++
Sbjct: 369 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 428
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F +M +P+ VT + +L A
Sbjct: 429 FKQMMNGGAEPSDVTFLALLYA 450
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 48/256 (18%)
Query: 58 QIHAQMLRTSLFFDP-------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
QIHA ++++ L FD D+ R VF + + + S++ GY
Sbjct: 139 QIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRV 198
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+ + +M+ G+ P+ F ++ K+C D+ + + H + G S+ +
Sbjct: 199 GKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA 258
Query: 161 NTLINMYSS--------------------CWCL--------DQPDEAIKIFYRMEIE-NV 191
+ LI+M+ CW D DEA++ FY M+ + +
Sbjct: 259 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 318
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P+ T VLTA L+ K VH V +GF +V ++++L+D Y KC V +
Sbjct: 319 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 378
Query: 252 LFVKMLFPWNNYGQWA 267
+F +M P N W+
Sbjct: 379 IFDRM--PIKNSVSWS 392
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 38/263 (14%)
Query: 73 CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSL 131
CA R +F ++ P SI+ T + EA F++ M G+ PD F F ++
Sbjct: 269 CALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV 328
Query: 132 FKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188
+C ++ KQ +H++ I G + + ++L++MY C + E+ +IF RM I
Sbjct: 329 LTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVG---ESQRIFDRMPI 385
Query: 189 ENV---------------------------KPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+N K + +L A +R K VH
Sbjct: 386 KNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQY 445
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRH 281
G W V +++ L+D Y KC + A +F +M P N W ++ +G GR
Sbjct: 446 IRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQM--PVRNLITW--NSMIGGFAQNGRG 501
Query: 282 STAHQISGPCPKKAHKLFFFSML 304
A +I K+ K + S +
Sbjct: 502 EEALRIFNQMVKEGIKPDYISFI 524
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 32/165 (19%)
Query: 127 MFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMY---------------- 167
++ SL ++C + Q+H+ IK GL D F+ N+L+ +Y
Sbjct: 120 LYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDG 179
Query: 168 -------------SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
S + +P ++++F++M V+PNA TL V+ A + DL+
Sbjct: 180 LFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 239
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
+ H V GF S+ + + L+D + + + A LF ++L P
Sbjct: 240 RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEP 284
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 51 STMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCNSI 96
+ +R+ K++H Q +R + D C +Y + +F Q+ + T NS+
Sbjct: 433 AAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEY-AQTIFDQMPVRNLITWNSM 491
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ G+ EA +++M+ +G+ PD F + +C+
Sbjct: 492 IGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 531
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 83/146 (56%), Gaps = 16/146 (10%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP-------------CADYHVRLVFSQISNPTI 90
++ L+ C +E++QIHAQ + + L P Y+ LVF++I +P +
Sbjct: 29 VILLQMCHNFQEVRQIHAQFIVSGLLARPPNAGRLLDSYVSMSQIYYALLVFNRIPSPDV 88
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQ 147
+ N+++RG T N +++ L Y+++++ GL PD + + + K C+ I+ KQ+H Q
Sbjct: 89 FAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQ 148
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCL 173
IK G+A D+ +H +LI+MY+ CL
Sbjct: 149 VIKAGVAPDTHIHTSLIHMYAKSDCL 174
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 35/214 (16%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV---QGLIPDRFMFPSLFKS 134
R +F ++ T + ++ GYT +H EA + + EM++ G+ P+ S +
Sbjct: 208 ARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSA 267
Query: 135 CADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCL------------------ 173
A + Q +H+ + G L L++MY+ C +
Sbjct: 268 TACLGALDQGRWIHAYIRRIGAKISITLGTGLVDMYAKCGSIHCSYKLFREMQQRDVVTW 327
Query: 174 ----------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR-VHKCVD 222
Q + ++F M +PN V V +L+A + A L ++ V
Sbjct: 328 GVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAILSACSHAGYLELGHHYFNQMVT 387
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ G VE ++D + ++ A +L + M
Sbjct: 388 DFGIRPSVEHYGCMVDLLGRAGQLAEAEELIISM 421
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 55/252 (21%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKN--LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
+F QI +P + T N ++R Y++ + + Y M+ + P+ + FP K+C
Sbjct: 79 LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF------------ 183
AD + + +H AI GL +D F+ L++MY C CL PD A IF
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACL--PDAA-HIFATMPARDLVAWN 195
Query: 184 ---------------------YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH---- 218
+M++ ++PNA TLV +L A+ L VH
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255
Query: 219 -KCV-----DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATV 272
C+ +S V L T L+D Y KC + A +F M P N W SA +
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM--PARNEVTW--SALI 311
Query: 273 GPQGLVGRHSTA 284
G L R + A
Sbjct: 312 GGFVLCSRMTQA 323
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP----SLF 132
+ R VF + T ++++ G+ + +AFL + M+ QGL F+ P S
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC---FLSPTSIASAL 347
Query: 133 KSCADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------- 176
++CA + + +QLH+ K G+ +D N+L++MY+ +DQ
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407
Query: 177 ---------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+EA +F +M+ NV+P+A T+V+++ A + L+ + H V
Sbjct: 408 SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGR 280
G S + L+D Y KC + + +F M P + W M A G GL G+
Sbjct: 468 IIRGLASETSICNALIDMYAKCGRIDLSRQVFNMM--PSRDIVSWNTMIAGYGIHGL-GK 524
Query: 281 HSTA 284
+TA
Sbjct: 525 EATA 528
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D +N LI YSS D + ++ RM V PN T L A + D +
Sbjct: 87 DVRTYNDLIRAYSSSSPTAAAD-GLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGR 145
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSAT 271
+H+ +G + + + T L+D Y KC + A +F M L WN AM A
Sbjct: 146 AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN-----AMLAG 200
Query: 272 VGPQGLVGRHSTAHQIS 288
G+ H+ AH +S
Sbjct: 201 YAHHGMY-HHAVAHLLS 216
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 31/157 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
+ ++ T + NSI+ G++++ A ++ M+ G+IPD F + ++ CA+
Sbjct: 530 IHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLAT 589
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+ + KQ+H Q +K L SD ++ +T+++MYS C +
Sbjct: 590 VELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICA 649
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
++AIK+F M+++NVKPN ++VL A A
Sbjct: 650 YAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACA 686
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 44/236 (18%)
Query: 58 QIHAQMLRTSLFFDPCAD-------------YHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
Q+HA L+T+ +D R VF+ NPT + N+++ GY ++
Sbjct: 292 QLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQD 351
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVEK-QLHSQAIKFGLASDSFLHN 161
EA + + L D +C+ I Y+E QLH A+K GL + + N
Sbjct: 352 QVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVAN 411
Query: 162 TLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKP 193
T+++MY+ C L + +E + +F M ++P
Sbjct: 412 TILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEP 471
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
+ T +V+ A A + L VH V +SG + + ++D YCKC + A
Sbjct: 472 DDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEA 527
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 106/269 (39%), Gaps = 49/269 (18%)
Query: 46 SLEKCSTMR---ELKQIHAQMLRTSLFFDPCA-----DYHVR--------LVFSQISNPT 89
+L CS ++ E Q+H ++ L F+ C D + + L+F +
Sbjct: 378 ALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKD 437
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHS 146
+ N+I+ + E + M+ + PD + F S+ K+CA + ++H
Sbjct: 438 AVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHG 497
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
+ IK G+ D F+ + +I+MY C L Q +
Sbjct: 498 RVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGEN 557
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+ F RM V P+ T VL A + K++H + + S V + +T++D
Sbjct: 558 ALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVD 617
Query: 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
Y KC + + +F K P +Y W+
Sbjct: 618 MYSKCGNMQDSRIMFEKA--PKRDYVTWS 644
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 35/220 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
H +F ++ ++++ GY + E Y M+ +G+ + F S F+SCA
Sbjct: 223 HAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCA 282
Query: 137 DI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL-------------------- 173
+ + QLH+ A+K D+ + ++MY+ C +
Sbjct: 283 GLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNA 342
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
DQ EA++IF ++ + + ++L LTA + + ++H + G
Sbjct: 343 LIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCG 402
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAW----DLFVKMLFPWN 261
++ + T++D Y KC + A D+ +K WN
Sbjct: 403 LDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWN 442
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 123/316 (38%), Gaps = 69/316 (21%)
Query: 14 PALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSL-- 68
P L+S +P + +I++N +N + F + +KCS ++ + KQ HAQ+ T
Sbjct: 13 PILNSQTTPPYAIHSISSNQMNPTKKLTFSHI-FQKCSNLKAINPGKQAHAQITVTGFVP 71
Query: 69 ----------FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTN-KNLHHEAFLF---- 112
F+ C + + VF ++ + + N+++ GY N+ FLF
Sbjct: 72 TVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMP 131
Query: 113 ------------------YHEMIVQGLIPDRFM--------FPSLFKSCA---DIYVEKQ 143
+H ++ R + F + K+C D + Q
Sbjct: 132 ERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQ 191
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+H AI+ G SD L++MYS+C LD A IF M + N+V V+
Sbjct: 192 VHCLAIQMGFDSDVVTGTALVDMYSTCKKLDH---AFNIFCEMP----ERNSVCWSAVIA 244
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY 263
R +++K + + G + T A+ C +S A++L ++
Sbjct: 245 GYVRNDRFTEGLKLYKVMLDEGMGVS---QATFASAFRSCAGLS-AFELGTQL------- 293
Query: 264 GQWAMSATVGPQGLVG 279
+A+ G +VG
Sbjct: 294 HAYALKTNFGYDNIVG 309
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 51 STMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIV 97
+T+ KQIH Q+L+ L + C + R++F + T ++++
Sbjct: 588 ATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMI 647
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQLH 145
Y L +A + EM +Q + P+ +F S+ ++CA + +V+K LH
Sbjct: 648 CAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLH 696
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D + + VF ++ T+ + S++ GY + L A + EM +G++PD +
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYA 456
Query: 128 FPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------- 175
S+ +CA ++ K +H + L ++SF+ N L +MY+ C +
Sbjct: 457 VTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK 516
Query: 176 -------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
P+EA+ +F M+ E+ KP+ T+ +L A A L +
Sbjct: 517 KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGRE 575
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQ 275
+H +G+ + ++D Y KC + A LF + P + W M A G
Sbjct: 576 IHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFD--MIPNKDLVSWTVMIAGYGMH 633
Query: 276 G 276
G
Sbjct: 634 G 634
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 36/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
+F ++++ + + NS++ GY L + +M+V G+ D ++F +CA+I
Sbjct: 308 LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGT 367
Query: 139 -YVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQP-------------------- 176
+ K LHS +IK L + +NTL++MYS C L+
Sbjct: 368 LLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427
Query: 177 --------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
D AIK+F M+ V P+ + ++L A A +L++ K VH + E+ +
Sbjct: 428 GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLET 487
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+ + L D Y KC + A D+F M + WN
Sbjct: 488 NSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWN 524
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
+++ G++ + +F ++ C D+ + + + + S FL N +I+ YS
Sbjct: 181 VMIDGILGVKLVF--MYVKCGDLKEGRMVFDKLSE----SKIFLWNLMISEYSGS---GN 231
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
E+I +F +M +KPN+ T ++L A + ++VH + + GF S+ + +
Sbjct: 232 YGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNS 291
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L+ Y + V A LF ++ + WN+
Sbjct: 292 LISFYFVGRKVRCAQKLFDELTDRDVISWNS 322
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 39/210 (18%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
++++ GY+N + F EM++ G PD S+ SC+ I + + +H AIK
Sbjct: 410 STMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIK 469
Query: 151 FGLASDSFLHNTLINMY------SSCWCL----DQPD------------------EAIKI 182
+ + + N+L++MY ++ W + Q D EAI +
Sbjct: 470 NSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIIL 529
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M E V PN VT + VL+A A L +++H+ + E+GF S++ ++T L+D Y K
Sbjct: 530 FDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAK 589
Query: 243 CKFVSRAWDLF----VKMLFPWN----NYG 264
C + + LF + + WN NYG
Sbjct: 590 CGELETSRKLFNSTEERDVILWNVMISNYG 619
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 55/263 (20%)
Query: 52 TMRELKQIHAQMLRTS----LFFD----PCADYHVRLVFSQ-----ISNPTIYTCNSIVR 98
T + L Q H+ ++ T +FF YH + FS I + I+ NSI++
Sbjct: 52 TFQSLLQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQ 111
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGL-A 154
+ + + AF FY +M +P++F P + +CA++ + +H K GL
Sbjct: 112 SHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFV 171
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
+S + ++ I MYS C + A +F + +++V +V + R L+ +
Sbjct: 172 GNSAIGSSFIYMYSKC---GHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCL 228
Query: 215 KRVHK----------------CVD---------------ESGFWSHVELKTTLMDAYCKC 243
+H+ CVD ++GF +K+T++ Y +C
Sbjct: 229 FEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRC 288
Query: 244 KFVSRAWDLFVKM----LFPWNN 262
A+ F K+ L W +
Sbjct: 289 GSPEEAYRCFCKLDQKDLISWTS 311
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADI 138
F ++ + + SI+ ++ L E + EM +IPD + + F + I
Sbjct: 298 FCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRI 357
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMY-------------------SSCWC------- 172
+ K H++ +K A HN L++MY S W
Sbjct: 358 FEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSEDWSTMILGYS 417
Query: 173 -LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
+ Q ++ I M + +P+ +LV+V+++ ++ + + +H ++ +V
Sbjct: 418 NMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVS 477
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ +LMD Y K V+ W +F + L WN
Sbjct: 478 VANSLMDMYGKSGHVTATWRIFHRTLQRDVISWN 511
>gi|302797737|ref|XP_002980629.1| hypothetical protein SELMODRAFT_51574 [Selaginella moellendorffii]
gi|300151635|gb|EFJ18280.1| hypothetical protein SELMODRAFT_51574 [Selaginella moellendorffii]
Length = 499
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 44/245 (17%)
Query: 59 IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNKNL 105
IH +++ L DP HV + VF ++ +P I + N I+ G+ ++
Sbjct: 19 IHDRIVSRGLDRDPTIADHVVYMYVKCGSFETAKSVFQRMPDPGILSWNRIIAGHAQRHE 78
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNT 162
EA + ++++QG+ P R + + +C + V KQ+HSQ + G S +
Sbjct: 79 LEEAIATFQKLLLQGVTPGRITYVAALGACCGSRFLPVGKQIHSQIVAAGWDSSLIVSTA 138
Query: 163 LINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKPN 194
LI+MY++C L ++A + + M +E P
Sbjct: 139 LIDMYAACGSLRGAIRVFQGMKRRDVVAWTAIVAAFAQYGHLEKAFQTYRGMLLEGFLPV 198
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
VT + +L A A +D + +H+ + E S + + L+ + KC + +A +F
Sbjct: 199 LVTFLALLNALAEEKDWDRGRWIHRHITEMKLESQLSVAAALITMFGKCGDLKKARRVFR 258
Query: 255 KMLFP 259
++ P
Sbjct: 259 RIHQP 263
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 36/230 (15%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F C D R VF +I P + N+++ +T A L + M G+ PDR
Sbjct: 243 MFGKCGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRMQEDGVAPDRET 302
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------- 177
+ +C D+ K +H I L D + N LI MYS C L+ +
Sbjct: 303 VLAALGACIRPVDLEHGKGIHVSVINHDLEKDIDVANALIYMYSKCGSLEDAEWMFQRVE 362
Query: 178 ---------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
EA+ F +M +E + P V+ L A R +
Sbjct: 363 RPSMVSWRTLLAAYVKHGRNEEALSSFRKMLLEGISPGRSACVSALRACGRLGLPGQGRH 422
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNN 262
+H V E G SH + +++ Y KCK + A +F K+ P WN+
Sbjct: 423 IHLIVQELGLESHNRVVYAVVEMYGKCKCLEDARRVFEKIEQPNLSSWNS 472
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQGL-----IPDRFMFPSLFKSCADIYVEKQLHSQAIK 150
++R Y N L + ++ +GL I D ++ ++ C K + +
Sbjct: 3 LLRAYANSKDLQAGILIHDRIVSRGLDRDPTIADHVVY--MYVKCGSFETAKSVFQRMPD 60
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
G+ S N +I ++ + +EAI F ++ ++ V P +T V L A +R
Sbjct: 61 PGILS----WNRIIAGHAQ---RHELEEAIATFQKLLLQGVTPGRITYVAALGACCGSRF 113
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L K++H + +G+ S + + T L+D Y C + A +F M
Sbjct: 114 LPVGKQIHSQIVAAGWDSSLIVSTALIDMYAACGSLRGAIRVFQGM 159
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 53 MRELKQIHAQMLRTSL---------------FFDPCADYHVRLVFSQISNPTIYTCNSIV 97
M+E K++HA ++ + L + +H RL+F I +P+ Y N++
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLA 154
R Y A L + M+ G PD + FP L K+C A + ++LH QA+KFGL
Sbjct: 61 RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120
Query: 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV 214
F+ N+LI++Y S +D A ++F M ++ + +L A + ++
Sbjct: 121 GHVFVENSLIHLYGSNSGMDS---ARRVFDGMGYRDI----ASWTTLLACYANSCSVKAA 173
Query: 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
++V + E S+ + ++ AY + A DLF ++
Sbjct: 174 RKVFDEMPERSVISY----SAMIAAYVRGNRFREALDLFRELF 212
>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
Length = 708
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F ++ + T N++V G TN E+ F+ +M +G+ PD F S+F+ CA
Sbjct: 188 ARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAG 247
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------------- 178
D+ +Q+H+ ++ GL D + ++L +MY C CL + +
Sbjct: 248 LRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTI 307
Query: 179 ------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
A++ F M V + VT V+ +++ + L +++H V ++G
Sbjct: 308 IAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGV 367
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286
V + T L+ Y +C + + +F F + + +SA + G G A +
Sbjct: 368 DKVVPVMTCLVHMYSRCGCLGDSERVF----FGYCGSDTFLLSAMISAYGFHGHGQKAIE 423
Query: 287 I 287
+
Sbjct: 424 L 424
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 47/202 (23%)
Query: 50 CSTMREL---KQIHAQMLRTSLFFDPC-----ADYHVR--------LVFSQISNPTIYTC 93
C+ +R++ +Q+HA ++R+ L D C A ++R V + + +I +C
Sbjct: 245 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 304
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
N+I+ G T A ++ M G+ D F S SC+D+ +Q+H Q +K
Sbjct: 305 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 364
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPD----------------------------EAIKI 182
G+ + L++MYS C CL + +AI++
Sbjct: 365 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 424
Query: 183 FYRMEIENVKPNAVTLVNVLTA 204
F +M +P+ VT + +L A
Sbjct: 425 FKQMMNGGAEPSDVTFLALLYA 446
>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
Length = 694
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 53/271 (19%)
Query: 44 LVSLEKCST---MRELKQIHA-----QMLRTSL--------FFDPCADYHVRL-VFSQIS 86
L LE C + + + KQIHA Q+L + + + C + + VFS++
Sbjct: 14 LALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMR 73
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQ 143
+ + N+ + + M ++G+ PD+ F S +C + +
Sbjct: 74 ERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRL 133
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------------------ 177
+H+ ++ G+ D L L+ MY C CL+ P+
Sbjct: 134 IHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAH 193
Query: 178 --EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
EAI++F RM + V+P V+ + VL A L +R+H+ + E S +E+
Sbjct: 194 FAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVAN 253
Query: 235 TLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+ Y +C V A +F M L WN
Sbjct: 254 ALVTMYGRCGGVGDAERVFSAMERRDLVSWN 284
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C + R +F S+ + + NS++ Y +AF M +G++PDR
Sbjct: 398 MYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVT 457
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------- 177
F +L +C + K +H++ I GL D+ + N L+N YS C LD
Sbjct: 458 FITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALD 517
Query: 178 ---------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR 212
EA+K + M+ + V+P+A+T + +L+A + A LR
Sbjct: 518 YRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLR 573
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 37/210 (17%)
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHS 146
+ + N+++ GY A + M+++G+ ++ F SL C + +Q +H
Sbjct: 317 VISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRALLRQGETIHR 376
Query: 147 QAIKFG--LASDSFLHNTLINMYSSCWCLD----------------------------QP 176
I L+SD + ++NMY C LD +
Sbjct: 377 CVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRA 436
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
++A + RM E V P+ VT + +L A +R K +H + +SG + L
Sbjct: 437 EQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANAL 496
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNN 262
++ Y KC + A LF + + WN
Sbjct: 497 VNFYSKCGNLDTATSLFGALDYRDVVSWNG 526
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 100/255 (39%), Gaps = 45/255 (17%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
C + L KC+ + L+Q H + L D + RLVF QI P
Sbjct: 59 CFLLLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPD 118
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
Y I+R Y N E FY ++ G D +F K+C D+ K++H
Sbjct: 119 FYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHC 178
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
Q +K + D+ + L++MY+ C + D +E
Sbjct: 179 QIVKVP-SFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEE 237
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+ +F RM +V N T ++ A + R L K H C+ +SG L T+L+D
Sbjct: 238 GLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLD 297
Query: 239 AYCKCKFVSRAWDLF 253
Y KC +S A +F
Sbjct: 298 MYVKCGDISNARRVF 312
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 131/313 (41%), Gaps = 51/313 (16%)
Query: 31 NNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA-----DYHV------- 78
N+ + ++Y +++ K + + K H ++++ + C D +V
Sbjct: 248 NSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISN 307
Query: 79 -RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
R VF++ S+ + +++ GYT+ +EA + +M G+ P+ S+ C
Sbjct: 308 ARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGL 367
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD------- 177
++ + + +H +IK G+ D+ + N L++MY+ C+ + D
Sbjct: 368 VGNLELGRSIHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSI 426
Query: 178 -----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
EA+ +F+RM E+V PN VT+ ++ +A A L +H + GF
Sbjct: 427 ISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGF 486
Query: 227 W--SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
S V + T L+D Y KC A +F + N W SA +G G G +
Sbjct: 487 LASSSVHVGTALLDFYAKCGDAESARLIFDTI--EEKNTITW--SAMIGGYGKQGDTKGS 542
Query: 285 HQISGPCPKKAHK 297
++ KK K
Sbjct: 543 LELFEEMLKKQQK 555
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
+ VF S I NSI+ G++ HEA +H M + ++P+ SLF +CA
Sbjct: 409 KYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASL 468
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLH--NTLINMYSSCW-------CLDQPDE-------- 178
+ + LH+ ++K G + S +H L++ Y+ C D +E
Sbjct: 469 GSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSA 528
Query: 179 -------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DES 224
++++F M + KPN T +VL+A + + K+ + +
Sbjct: 529 MIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDY 588
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
F + T ++D + + +A D+ KM
Sbjct: 589 NFTPSTKHYTCMVDMLARAGELEQALDIIEKM 620
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF ++ + + S+V GY N H E+ + +M V G+ PD+F+ S+ +CA++ +
Sbjct: 421 VFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTL 480
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
KQ+H IK GL ++N+L+ MY+ C CLD D IF M++++V +T
Sbjct: 481 LEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDAD---AIFVSMQVKDV----IT 533
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESG 225
++ A+ R + + + SG
Sbjct: 534 WTAIIVGYAQNGKGRNSLKFYDAMVSSG 561
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 37/223 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R +F S + T +SI+ GY EAF + M ++G +F S+ + C+
Sbjct: 114 EARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCS 173
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD---------------- 177
I + +H +K G + F+ L++MY+ C C+ + +
Sbjct: 174 SLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLW 233
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+A++ F M + V+ N T +LTA + ++VH + +
Sbjct: 234 TAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVK 293
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
SGF S+V +++ L+D Y KC + A ++ M + WN+
Sbjct: 294 SGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNS 336
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 70 FDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D + + + + + + + NS++ G+ L EA + M + + D + F
Sbjct: 310 YAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTF 369
Query: 129 PSLFKSCADIYVE-KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------- 174
PS+ C + K +H IK G + + N L++MY+ +D
Sbjct: 370 PSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKD 429
Query: 175 ---------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
+E++KIF M + V P+ + ++L+A A L K+VH
Sbjct: 430 VISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHL 489
Query: 220 CVDESGF-WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+SG WS + +L+ Y KC + A +FV M
Sbjct: 490 DFIKSGLRWSQ-SVYNSLVAMYAKCGCLDDADAIFVSM 526
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA +F M +E K + TL +VL + ++T + +H V ++GF +V + T L+
Sbjct: 145 EAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLV 204
Query: 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSAT 271
D Y KCK VS A LF + F N+ W T
Sbjct: 205 DMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVT 238
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 60/277 (21%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQI- 85
C+ S+ CS+++ L ++IH ++++ L + C + +F+ I
Sbjct: 214 CVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSIL 273
Query: 86 ------SNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA--- 136
N I+ N ++ GY + +A L + +M+V G+ PD SLF C+
Sbjct: 274 DKDSVRRNAVIW--NVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESL 331
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------------------- 175
DI KQ+H KFGL ++ + L++MY C +
Sbjct: 332 DIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVIS 391
Query: 176 -------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
P +A+++FY ++E+ ++ LV VL A + ++H + GF S
Sbjct: 392 NCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVS 451
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
V + + L+D Y KC+ + + +F+++ L WN
Sbjct: 452 DVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWN 488
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 51/281 (18%)
Query: 33 NINSQYQAHFCLVSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYH 77
I Y L SL CS ++ KQIH + + L + C D
Sbjct: 312 GIKPDYSTMVSLFSL--CSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMG 369
Query: 78 VRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
L +F + N + ++++ +A ++E ++ + D + ++ ++C+
Sbjct: 370 TGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACS 429
Query: 137 DIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSC----------------------- 170
+ ++ Q+H A K G SD F+ + L+++Y+ C
Sbjct: 430 SLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNA 489
Query: 171 ----WCLDQ-PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+ D+ DEA+K F M++E ++PN VT+ +L+ A + K VH + G
Sbjct: 490 LISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQG 549
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
S V + +L+ Y KC ++ + F KM P N W
Sbjct: 550 LGSTVLVSNSLIATYAKCGDINSSLYTFEKM--PERNDVSW 588
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 117/274 (42%), Gaps = 53/274 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCADIY 139
+F ++ + + N+++ G+ + + +F+ M+ + G+ P+R S SC+ +
Sbjct: 166 MFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQ 225
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------- 177
+++H +K GL + +L ++LI MY C + +
Sbjct: 226 SLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIW 285
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+A+ +F +M + +KP+ T+V++ + + + D+ K++H + +
Sbjct: 286 NVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFK 345
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHST 283
G +++ ++T L+D Y KC + +F + N+ SA + G
Sbjct: 346 FGLKNNIRVETALLDMYLKCGDMGTGLKIFRRS----QNHNLIMWSAVISNCAQSG---- 397
Query: 284 AHQISGPCPKKAHKLFF-FSMLKKVHVPGVLIQV 316
CP KA +LF+ F M + G+L+ V
Sbjct: 398 -------CPTKALELFYEFKMEDGLADSGILVAV 424
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 39/200 (19%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF-MFPSLFKSCA---DIYVEKQLHSQAI 149
N+++R YT +A Y +M+ G+ + F FP L K+ D+Y +Q+H +
Sbjct: 77 NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-EIE------------------- 189
K G+ D + N+L+ MY C + ++A+++F +M E++
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVV---EDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTR 193
Query: 190 ------------NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
+ PN V V+ + + + + L + +H V +SG L ++L+
Sbjct: 194 SLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLI 253
Query: 238 DAYCKCKFVSRAWDLFVKML 257
+ Y KC + A ++F +L
Sbjct: 254 EMYMKCGSIKNAENIFNSIL 273
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 34/239 (14%)
Query: 53 MRELKQIHAQMLRTSL--FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
M EL I + L L + C + L VF I + +++ ++ +
Sbjct: 1 MEELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRC 60
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINM 166
+LF+ M++QG+ P +C D I + + + + G+ +S + L+++
Sbjct: 61 WLFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSL 120
Query: 167 YSSCW-CLD---------------------------QPDEAIKIFYRMEIENVKPNAVTL 198
Y C D P EA+ +F +M+++ V PN VTL
Sbjct: 121 YGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTL 180
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
V+ L A A DLR+ +H+ V+ G S V + T L++ Y KC + A + F +++
Sbjct: 181 VSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIV 239
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 37/219 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF ++S+ + +++V Y EA + +M + G+ P++ S +CA D
Sbjct: 133 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 192
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WCL---- 173
+ +H + G+ S + L+N+Y C W
Sbjct: 193 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAA 252
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD--ESGFW 227
D+ +AI++ +RM++E + PN+ T V+VL A A L+ +R+H+ + G
Sbjct: 253 YARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLE 312
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
S V + T L++ Y KC ++ A ++F K+ L WN+
Sbjct: 313 SDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNS 351
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 107/261 (40%), Gaps = 57/261 (21%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL-------------FFDPCADYHV-RLVFSQISNPT 89
LE C R L + IH +L+ SL + C + + R VF +I +P
Sbjct: 6 LESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPR 65
Query: 90 I--YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQL 144
I + ++R Y + +A Y++M+ G+ P +F +P + K+CA + K +
Sbjct: 66 INPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLI 125
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV------------- 191
HS A+D ++ L++ Y+ C LD AIK+F M ++
Sbjct: 126 HSHVKCSNFAADMYVCTALVDFYAKCGELDM---AIKVFDEMPKRDIVAWNAMISGFSLH 182
Query: 192 -------------------KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
PN T+V + A RA LR K VH GF + + +
Sbjct: 183 CCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVV 242
Query: 233 KTTLMDAYCKCKFVSRAWDLF 253
KT ++D Y K K + A +F
Sbjct: 243 KTGILDVYAKSKCIIYARRVF 263
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 98/268 (36%), Gaps = 52/268 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIY 91
+L + +RE K +H R D C Y R VF
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIY-ARRVFDSDFKKNEV 272
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCA---DIYVEKQLHS 146
T ++++ GY + EA + +M+V + + CA D+ + +H
Sbjct: 273 TWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGGRCVHC 332
Query: 147 QAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQPDE 178
AIK G D + NT+I+ Y S C + +E
Sbjct: 333 YAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRAEE 392
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+ ++F++M+ ++P+ TL+ +LTA + L H +G+ + + LMD
Sbjct: 393 SFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMD 452
Query: 239 AYCKCKFVSRAWDLFVKM----LFPWNN 262
Y KC + A +F M + WN
Sbjct: 453 MYTKCGKLYVAKRVFDTMHKRDIVSWNT 480
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
++A+ ++Y+M V+P T VL A A R + K +H V S F + + + T
Sbjct: 84 AEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTA 143
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+D Y KC + A +F +M + WN
Sbjct: 144 LVDFYAKCGELDMAIKVFDEMPKRDIVAWN 173
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 41/220 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA- 136
R VF + + ++ N+++ Y+ L+ E + EMI L+PD F +P + K+CA
Sbjct: 495 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 554
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS-CWCLDQ------------------ 175
D+ + +H +K GL D F+ N L++ Y + + D
Sbjct: 555 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 614
Query: 176 ---------PDEAIKIFYRMEIENVK----PNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+E+ + M EN P+ TLV VL AR R++ K VH
Sbjct: 615 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 674
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+ + L LMD Y KC ++ A +M+F NN
Sbjct: 675 KLRLDKELVLNNALMDMYSKCGCITNA-----QMIFKMNN 709
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 48/236 (20%)
Query: 17 SSDNSPLINLDNINNNNINSQYQAHFCLVSL-EKCSTMREL---KQIHAQMLRTSLFFDP 72
+ N P ++LD I+ F + SL CS ++ L K++H ++R L D
Sbjct: 827 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 886
Query: 73 ------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
C + V+ +F + + ++ + N+++ GY A + +M++
Sbjct: 887 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 946
Query: 120 GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G+ +F +C+ + + ++ H+ A+K L D+F+ +LI+MY+ + Q
Sbjct: 947 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 1006
Query: 177 D----------------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F M+ P+ +T + VLTA
Sbjct: 1007 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 1062
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 31/212 (14%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+H VF+++ +++ N +V GY EA Y+ M+ G+ PD + FP + ++C
Sbjct: 148 WHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTC 207
Query: 136 ADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------------CLD-- 174
I + +++H+ ++FG + + N L+ MY+ C C+
Sbjct: 208 GGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWN 267
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ + +++F M V+PN +T+ +V A ++ K +H +
Sbjct: 268 AMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKR 327
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF V +L+ Y + A +F +M
Sbjct: 328 GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRM 359
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 44/244 (18%)
Query: 54 RELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGY 100
R +++HA +LR + C D R VF ++ + N+++ G+
Sbjct: 214 RMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGH 273
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDS 157
+ + M+ + P+ S+ + ++ K++H A+K G A D
Sbjct: 274 FENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDV 333
Query: 158 FLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIE 189
N+LI MY+S + PD+A++++ ME+
Sbjct: 334 AFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELH 393
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NV P+ VT+ + L A A L ++H+ GF +V + L++ Y K K + +A
Sbjct: 394 NVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKA 453
Query: 250 WDLF 253
++F
Sbjct: 454 IEVF 457
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 34/215 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+FS++ + +++ GY +A Y M + + PD S +C
Sbjct: 355 IFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGR 414
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI--------------- 182
+ V +LH A G + N L+ MY+ +D+ E K
Sbjct: 415 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474
Query: 183 ------------FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
++R + +VKPN+VT + L+A A LR+ K +H V G S
Sbjct: 475 FCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG 534
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+D Y KC S AW F K + WN
Sbjct: 535 YVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 569
>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
Length = 1817
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 49/269 (18%)
Query: 58 QIHAQMLRTS----LFFDPC---------ADYHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
QIHA++++T LF + A + VF + + SI+ G++
Sbjct: 1337 QIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNG 1396
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE----KQLHSQAIKFGLASDSFLH 160
EA LF+ EM+ + P+ + S +C + LH+ +K G +F+
Sbjct: 1397 RGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVV 1456
Query: 161 NTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVK 192
+ LI+ YS C +DQ +EA+K+F M +
Sbjct: 1457 SCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLX 1516
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P TL ++L A L+ ++VH V + G S+V + + L+D Y KC + A +
Sbjct: 1517 PTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCV 1576
Query: 253 FVKMLFP----WNNYGQWAMSATVGPQGL 277
F + + W + + GP+GL
Sbjct: 1577 FXQAVEKNTVLWTSMITGYAQSGRGPEGL 1605
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA++ F RM KP L L + A+ + ++H + ++GF ++ L + L+
Sbjct: 1299 EALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 1358
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC + A +F M
Sbjct: 1359 DLYAKCDAIVDAKRVFDGM 1377
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 28/227 (12%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC-------------ADYHVRLVFSQISNPTIYTC 93
L CS +LKQIH ++++ +L D + LVF+Q+ +P+ +T
Sbjct: 27 LRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTW 86
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSC---ADIYVEKQLHSQAI 149
N ++R + + EA L + M++ D+F FP + K+C + I + Q+H AI
Sbjct: 87 NLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAI 146
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
K G +D F NTL+++Y C +PD K+F +M ++ V+ +L
Sbjct: 147 KAGFFNDVFFQNTLMDLYFKC---GKPDSGRKVFDKMPGRSI----VSWTTMLYGLVSNS 199
Query: 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
L + + V + +V T ++ AY K + A+ LF +M
Sbjct: 200 QLDSAEIVFNQMP----MRNVVSWTAMITAYVKNRRPDEAFQLFRRM 242
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234
+PDEA ++F RM++++VKPN T+VN+L A + L + VH ++GF L T
Sbjct: 231 RPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGT 290
Query: 235 TLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQG 276
L+D Y KC + A +F K L WN +M ++G G
Sbjct: 291 ALIDMYSKCGSLQDARKVFDVMQGKSLATWN-----SMITSLGVHG 331
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 32/171 (18%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
+VF+Q+ + + +++ Y EAF + M V + P+ F +L ++
Sbjct: 204 AEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQ 263
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------ 176
+ + + +H A K G D FL LI+MYS C L
Sbjct: 264 LGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSM 323
Query: 177 ----------DEAIKIF-YRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
+EA+ +F E +V+P+A+T V VL+A A +++ R
Sbjct: 324 ITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLR 374
>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Glycine max]
Length = 770
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F + P++ + N+I+ GY H EA + +M Q PDR + SCA++
Sbjct: 370 RQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAEL 429
Query: 139 -YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
++E K++H+ + KFG D ++ ++LIN+YS C ++
Sbjct: 430 GFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSML 489
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+A+ F +M P+ + V+++ A+ L ++ H + + GF
Sbjct: 490 AGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFL 549
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
+ + ++L++ YCKC V+ A F M P N W
Sbjct: 550 DDIFVGSSLIEMYCKCGDVNGARCFFDVM--PGRNTVTW 586
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 105/278 (37%), Gaps = 52/278 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF I P T +++ G N EA + M+ +G+ D S+ CA
Sbjct: 195 VFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGER 254
Query: 141 E-------------KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------- 176
+ KQ+H+ ++K G D L N+L++MY+ +D
Sbjct: 255 DVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHS 314
Query: 177 -----------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219
++A + RM+ + +P+ VT +N+LTA ++ D+RT +++
Sbjct: 315 VVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFD 374
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVG 279
C+ S ++ Y + A +LF KM F + + ++ + +G
Sbjct: 375 CMPCPSLTSW----NAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELG 430
Query: 280 RHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVLIQVH 317
++ K F V+V LI V+
Sbjct: 431 FLEAGKEVHAASQK-------FGFYDDVYVASSLINVY 461
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 115/294 (39%), Gaps = 89/294 (30%)
Query: 57 KQIHAQMLRTSLFFDP-CADYHVRL------------VFSQISNPTIYTCNSIVRGYTN- 102
K +HA++ R +LF D +++ + L VF I + I++ N+I+ Y
Sbjct: 26 KVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKA 85
Query: 103 KNLHHEAFLF------------------------------YHEMIVQGLIPDRFMFPSLF 132
+NL + LF Y +++ G+IP F ++F
Sbjct: 86 RNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVF 145
Query: 133 KSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------------- 172
+C D ++ H IK GL S+ ++ N L+ MY+ C
Sbjct: 146 SACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEV 205
Query: 173 -----------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA-RDLRTV------ 214
+Q EA ++F M + ++ ++V+L ++L A+ RD+
Sbjct: 206 TFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTN 265
Query: 215 ---KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K++H + GF + L +L+D Y K + A +FV + + WN
Sbjct: 266 AQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWN 319
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 27/207 (13%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF ++ ++ + N ++ GY N+ +A + M G PD + ++ +C D
Sbjct: 306 VFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGD 365
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--EAIKIFYRMEIENVKPNA 195
+ +Q+ L S N +++ Y+ D EA+++F +M+ + P+
Sbjct: 366 VRTGRQIFDCMPCPSLTS----WNAILSGYNQ-----NADHREAVELFRKMQFQCQHPDR 416
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
TL +L++ A L K VH + GF+ V + ++L++ Y KC + + +F K
Sbjct: 417 TTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSK 476
Query: 256 M-------------LFPWNNYGQWAMS 269
+ F N+ GQ A+S
Sbjct: 477 LPELDVVCWNSMLAGFSINSLGQDALS 503
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 21/131 (16%)
Query: 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------PCADYH-VRLVF 82
S++ + S K S++ + +Q HAQ+++ D C D + R F
Sbjct: 516 SEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFF 575
Query: 83 SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK 142
+ T N ++ GY H A Y++MI G PD + ++ +C+
Sbjct: 576 DVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACS------ 629
Query: 143 QLHSQAIKFGL 153
HS + GL
Sbjct: 630 --HSALVDEGL 638
>gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa]
gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 44/248 (17%)
Query: 53 MRELKQIHAQMLRTSLFFDPCADYHV-RLVFSQI--SNPTIYTCNSIVRGYTNKNLHHEA 109
+R I ++++R + C D V VF ++ + + NS++ GYT L+ +A
Sbjct: 40 LRRNAGISSKLVR---LYSSCGDVEVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDA 96
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINM 166
Y +M +G+ PD+F FP + K+C I + + +H ++ G A+D F+ N L++M
Sbjct: 97 MALYFQMEEEGVEPDQFTFPRVLKACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDM 156
Query: 167 YSSCW-------CLDQPD---------------------EAIKIFYRMEIENVKPNAVTL 198
Y+ C D+ D EA+ F+ M + ++ ++V +
Sbjct: 157 YAKCGDIVKARRIFDKIDCKDSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAV 216
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM-- 256
+L A ++H + G + +L+ Y + + RA LF M
Sbjct: 217 STIL---ANVSSFEVAVQIHGWIVRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPK 273
Query: 257 --LFPWNN 262
+ WN+
Sbjct: 274 KDIVSWNS 281
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 26/161 (16%)
Query: 70 FDPCAD-YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ C D R +F +I + NS++ GY L EA +H M+ G+ D
Sbjct: 157 YAKCGDIVKARRIFDKIDCKDSISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAV 216
Query: 129 PSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD----------- 177
++ + + V Q+H ++ G+ D + N+LI +YS+ LD+
Sbjct: 217 STILANVSSFEVAVQIHGWIVRRGMEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDI 276
Query: 178 --------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
+A+ F ME + P+ +T V++L+A
Sbjct: 277 VSWNSIISAHCKDLKALTYFELMERDGALPDKITFVSLLSA 317
>gi|302804428|ref|XP_002983966.1| hypothetical protein SELMODRAFT_119183 [Selaginella moellendorffii]
gi|300148318|gb|EFJ14978.1| hypothetical protein SELMODRAFT_119183 [Selaginella moellendorffii]
Length = 876
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 112 FYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
+ M G++P+ F S+ SC D+ V + +H K+G SD + N+++NMY
Sbjct: 224 IFRAMENSGVVPNEVTFISMLSSCTVAEDLSVGRLIHEATDKYGYGSDVVVGNSVLNMYG 283
Query: 169 SCWCLDQP----DE--------------------------AIKIFYRMEIENVKPNAVTL 198
C +D+ DE A+++F M++E V N VT
Sbjct: 284 KCGDVDRARQLFDEMGDKHAAPVAWNSLMGAYTQTRNFVQAVELFSLMQLEGVSANKVTF 343
Query: 199 VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+ L A A ++ K V CV E G + +KT L+ + KC ++ A + ++L
Sbjct: 344 LAALNACAGLAEMTAGKTVVDCVVECGLFGDDLVKTALVSLFGKCGYLDVAESVLGEILV 403
Query: 259 P----WNN 262
P WN+
Sbjct: 404 PDSVSWNS 411
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 122/312 (39%), Gaps = 62/312 (19%)
Query: 5 LPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQ------ 58
+ + QTR + + L+ L+ ++ N + L +L C+ + E+
Sbjct: 312 MGAYTQTRNFVQAVELFSLMQLEGVSANKVT-------FLAALNACAGLAEMTAGKTVVD 364
Query: 59 -------IHAQMLRTSL--FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHE 108
+++T+L F C V V +I P + NSIV Y ++ H +
Sbjct: 365 CVVECGLFGDDLVKTALVSLFGKCGYLDVAESVLGEILVPDSVSWNSIVAAYASQQGHDQ 424
Query: 109 AFLF-YHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLI 164
L +H M GLIP+ +F + +C+++ KQ +H + G+ S L+
Sbjct: 425 DVLREFHLMHSHGLIPEDGVFVAALNACSNLGALKQGKLVHYLVRETGVESTDVF-TALV 483
Query: 165 NMYSSCWCL------------------------------DQPDEAIKIFYRMEIENVKPN 194
NMY C L +P+EA+ + RM+ E +P
Sbjct: 484 NMYGKCGELLIAREIFSSVPDEFRDALTWNALINAHTQQGKPEEALSFYRRMQQEGTRPR 543
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
V+VL A A +R+H+ V E + T L++ Y K V AW++F
Sbjct: 544 KSVFVSVLNAVAALGSSVEGRRIHEQVAECLLDLDSTVGTLLVNMYAKSGDVDTAWEIFE 603
Query: 255 KM----LFPWNN 262
+M WN+
Sbjct: 604 RMQHSDTVTWNS 615
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 54 RELKQIHAQMLRTSLFFDPCADYHV-----RL--------VFSQISNPTIYTCNSIVRGY 100
R KQ+ A++ R + H+ RL F I + + N+++ Y
Sbjct: 50 RAAKQLEAEITRRGFRGNKSLGNHLINLYGRLGCVRDAAAAFDGIEEKNVVSFNAMITAY 109
Query: 101 T-NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE--KQLHSQAIKFGLASDS 157
N + LF +++ + + F S+ KSC D +E + +H + GL++ +
Sbjct: 110 AQNGHSRQGLGLFRKLLLLDSKMANIVSFISVIKSCCDERLEECRWIHGLVDEAGLSTSN 169
Query: 158 FLHNT-LINMYSSCWCLDQPDEAI-----------------------------KIFYRME 187
+ T LINMY+ C + + IF ME
Sbjct: 170 IVVGTALINMYAVCGSVADAEAVFGSMESRNEITWSALIAAHAAVPGHACQIWDIFRAME 229
Query: 188 IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247
V PN VT +++L++ A DL + +H+ D+ G+ S V + ++++ Y KC V
Sbjct: 230 NSGVVPNEVTFISMLSSCTVAEDLSVGRLIHEATDKYGYGSDVVVGNSVLNMYGKCGDVD 289
Query: 248 RAWDLFVKM 256
RA LF +M
Sbjct: 290 RARQLFDEM 298
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 30/197 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCADY----HVRLVFSQISNPTI 90
+ SL C++ R+L ++HA +R SL C + H VFSQ+ P +
Sbjct: 17 MASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNL 76
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-------DRFMFPSLFKSCADIY---V 140
+ N++++ Y + H +A Y M+ + P DRF +P L K+C + +
Sbjct: 77 HLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDL 136
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
KQ+H ++ G S++ + N+LI MY+ L A K+F M+ +V V+
Sbjct: 137 GKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVL---ARKVFDGMQERDV----VSWNT 189
Query: 201 VLTARARARDLRTVKRV 217
V++A AR +R + V
Sbjct: 190 VISAHARLGQMRKARAV 206
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 33/214 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF+ + + T+ + ++V GYT A + M ++G PD ++ +CA
Sbjct: 204 RAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQL 263
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
+ + + +++ + + ++++ N L+ MY+ C C+DQ
Sbjct: 264 GALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMV 323
Query: 176 --------PDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESG 225
EA+++F ME + VKPN +T V +L+A + A L + + D G
Sbjct: 324 GGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYG 383
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
VE ++D C+ + R DL M P
Sbjct: 384 IEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLP 417
>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
[Vitis vinifera]
gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
Length = 617
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 118/268 (44%), Gaps = 47/268 (17%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
F L + K ++ + + +H Q+++T D AD +++L VF ++ +
Sbjct: 38 FLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHR 97
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
+ + N + G++ EA + ++ + P+ S+ +CA + ++ Q+H A
Sbjct: 98 NLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLA 157
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL-------DQ---------------------PDEAI 180
IK G+ SD ++ ++ MYS+C L DQ P
Sbjct: 158 IKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVF 217
Query: 181 KIFYR-MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+F +E PN+VTLV++L+A ++ +R +++H V + + T L+D
Sbjct: 218 DVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDM 277
Query: 240 YCKCKFVSRAWDLFVKM-----LFPWNN 262
Y KC A+ +F+++ L WN+
Sbjct: 278 YSKCGCWHWAYGIFIELSGSRNLVTWNS 305
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 66 TSLFFDPCADYHVRLVFSQIS----NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121
+ + +D V L F Q+ P T N+++ G++ + EAF F+H+M G+
Sbjct: 308 AGMMLNGQSDIAVEL-FEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGV 366
Query: 122 IPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC-------- 170
I SL ++C+ + K++H I+ + +D F+ LI+MY C
Sbjct: 367 IASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARR 426
Query: 171 -WCLDQ--PDE-------------------AIKIFYRMEIENVKPNAVTLVNVLT 203
+C Q PD+ A +IF +M+ E V+PN+ TLV++L+
Sbjct: 427 VFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILS 481
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+DI VE L Q GL DS NT+I+ +S Q EA K F++M+ V +
Sbjct: 316 SDIAVE--LFEQLEPEGLEPDSATWNTMISGFSQ---QGQVVEAFKFFHKMQSAGVIASL 370
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
++ ++L A + L++ K +H + + + T L+D Y KC A +F +
Sbjct: 371 KSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQ 430
Query: 256 MLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
++ W +A + G G++ +A +I
Sbjct: 431 FQIKPDDPAFW--NAMISGYGRNGKYQSAFEI 460
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 35/205 (17%)
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YVE-KQLHSQA 148
T +++V GY +A +++M G++P F + +C+D+ VE KQ+HS A
Sbjct: 287 TWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFA 346
Query: 149 IKFGLASDSFLHNTLINMYSSCW----------CLDQPD------------------EAI 180
K G ++ + +++MY+ C C+ QPD +
Sbjct: 347 FKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGL 406
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ +M++E V PN +T+ +VL A + L K++H + + GF V + + L Y
Sbjct: 407 NLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMY 466
Query: 241 CKCKFVSRAWDLFVKM----LFPWN 261
KC + + +F +M + WN
Sbjct: 467 TKCGSLDDGYLIFWRMPSRDVISWN 491
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R F + P + SI+ GY + Y +M ++ +IP+ S+ ++C+ +
Sbjct: 375 RKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSL 434
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
KQ+H++ IK+G + + + L MY+ C LD
Sbjct: 435 AALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMI 494
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
++A+++F +M +E +KP+ VT VN+L+A
Sbjct: 495 SGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSA 531
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 37/220 (16%)
Query: 65 RTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124
+T FD R +F ++ + +++ GY + ++ +A + M + I +
Sbjct: 165 KTGFVFDA------RKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQN 218
Query: 125 RFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----- 176
F S+ + +Y +Q+HS AIK GL + + N L+ MY+ C LD
Sbjct: 219 EFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFE 278
Query: 177 -----------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
D+A+K+F +M V P+ TLV V+ A + +
Sbjct: 279 FSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVE 338
Query: 214 VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
K++H + GF + + + ++D Y KC ++ A F
Sbjct: 339 GKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGF 378
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 31/174 (17%)
Query: 111 LFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMY 167
LF M +IP+ +F + + D+ KQ HS A+K G + D ++ ++L+NMY
Sbjct: 104 LFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMY 163
Query: 168 --------------------SSCWCL--------DQPDEAIKIFYRMEIENVKPNAVTLV 199
+ W D D+A+++F M E N L
Sbjct: 164 CKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALT 223
Query: 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+VL+A + T ++VH ++G + V + L+ Y KC + A F
Sbjct: 224 SVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTF 277
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 138/327 (42%), Gaps = 53/327 (16%)
Query: 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRT-----SLFFDPCADYHVRL--------V 81
+QY + + K + + K +H ++++ S P D + + V
Sbjct: 236 GNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSV 295
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DI 138
F ++S + + +++ GY + EA + + + L+P+ S+ +CA +
Sbjct: 296 FDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSL 355
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD--------------------- 177
+ + +H IK G + D+ N L++MY+ C +
Sbjct: 356 NMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGY 414
Query: 178 -------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-H 229
EA+++F +M ++V P+A+TLV+VL+A A R +H ++G S
Sbjct: 415 TQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGS 474
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289
V + T L++ Y KC A +F +M N W SA +G G+ G S + ++ G
Sbjct: 475 VYVGTALLNFYAKCGDAESARVIFDEM--GEKNTITW--SAMIGGYGIQGDCSRSLELFG 530
Query: 290 PCPKKA---HKLFFFSMLKKVHVPGVL 313
K+ +++ F ++L G+L
Sbjct: 531 DMLKEKLEPNEVIFTTILSACSHSGML 557
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 46/259 (17%)
Query: 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY----------HV---RLVFSQISNPT 89
C L C T+ L++IHA ++ L D + HV RL+F +I NP
Sbjct: 42 CFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPD 101
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYVE---KQLH 145
+Y+ ++R Y + + E FY+ + + L D +F + K+C+++ ++LH
Sbjct: 102 LYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH 161
Query: 146 SQAIKFGLASDSFLHNTLINMYSSC--------------------WCL--------DQPD 177
Q +K G + DSF+ L++MY+ C W D
Sbjct: 162 CQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLK 220
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
E + +F RM V+ N TL +++TA + L K VH V +SGF + L T L+
Sbjct: 221 EGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLL 280
Query: 238 DAYCKCKFVSRAWDLFVKM 256
D Y KC + A+ +F ++
Sbjct: 281 DLYFKCGDIRDAFSVFDEL 299
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCA---------------DYHVRLVFSQISNPTIYTC 93
+C ++R++KQ+HA M+ D A H RLVF +I +P +
Sbjct: 17 RCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMY 76
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMI-------VQGLIPDRFMFPSLFKSCADIYVEK---Q 143
N+++RG + + +A Y M + L PD+ FP + ++CA + + Q
Sbjct: 77 NTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQ 136
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203
+H+ +K G SD+F+ N LI M+++ L A +F + +AV +++
Sbjct: 137 VHAHVVKAGCESDAFVRNALIGMHAT---LGDLGAAAALFD----GEAREDAVAWSAMIS 189
Query: 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
AR D+ + + DES V ++ AY K ++ A +LF
Sbjct: 190 GFARRGDIGAAREL---FDESPVKDLVSW-NVMITAYAKLGDMAPARELF 235
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 33/160 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA- 136
R +F + + + N+++ GY +A + +M G PD SL +CA
Sbjct: 231 ARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACAD 290
Query: 137 --DIYVEKQLHS-QAIKFG-LASDSFLHNTLINMYSSC----------WCLDQPD----- 177
D+ ++LH + +F + + L N LI+MY+ C W + +
Sbjct: 291 SGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWN 350
Query: 178 -------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
E+I +F +M NVKP+ +T V VL A
Sbjct: 351 SIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAA 390
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL 153
++++ G+ + A + E V+ L+ M + + D+ ++L A
Sbjct: 185 SAMISGFARRGDIGAARELFDESPVKDLVSWNVMITA-YAKLGDMAPARELFDGAPD--- 240
Query: 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213
D N +I+ Y C Q A+++F +M+ KP+ VT++++L+A A + DL
Sbjct: 241 -RDVVSWNAMISGYVRCGSRKQ---AMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDA 296
Query: 214 VKRVHKCVDESGFWSHV----ELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+R+H + SG +S + L L+D Y KC ++ A ++F M + WN+
Sbjct: 297 GRRLHGFL--SGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNS 351
>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 51/260 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPCADYHVRLV--FSQISNP------------- 88
L+ C R L +QIHAQ+++ F +LV +++ NP
Sbjct: 17 LQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLK 76
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLH 145
+++ +++ K + EA L + EM GL+PD F+ P++ K+C I + K +H
Sbjct: 77 NVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGKVVH 136
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------DEAIKIFYR 185
GL S ++ P +EAI++FY
Sbjct: 137 ------GLVSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYE 190
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M E V+P VTL + L+A A L+ K+ H G L ++L++ Y K
Sbjct: 191 MREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGL 250
Query: 246 VSRAWDLFVKML----FPWN 261
+ A +F +ML WN
Sbjct: 251 IEDAESVFSRMLEKDVVTWN 270
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150
NS++ GY L+ EA ++EM +G+ P + S + A++ KQ H+ A+
Sbjct: 169 NSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVI 228
Query: 151 FGLASDSFLHNTLINMYSSC--------------------WCL--------DQPDEAIKI 182
G+ + L ++LIN YS W L + D+A+ +
Sbjct: 229 CGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNM 288
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
+ M +EN++ ++VTL +++A A R+L+ K H + S V + ++++D Y K
Sbjct: 289 CHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAK 348
Query: 243 CKFVSRAWDLF----VKMLFPWN 261
C+ + A +F K L WN
Sbjct: 349 CEKIGCARRVFNSSITKDLILWN 371
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 6/178 (3%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSC 135
R VF+ + N+++ + EA +++M ++ + P+ + SL F +
Sbjct: 356 RRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNS 415
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ K + Q G+ + TLI+ + EAI F RM+ VKPN
Sbjct: 416 GQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARS---GFGYEAILTFQRMQEAGVKPNV 472
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
V+++ VL A L+ + +H + + + + T+L+D Y KC +A +F
Sbjct: 473 VSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVF 530
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 31/148 (20%)
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQL 144
P + T +++ G +EA L + M G+ P+ + +C A + + + L
Sbjct: 435 PNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRAL 494
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------------------- 177
H I+ L + +L++MY+ C DQ PD
Sbjct: 495 HGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQA 554
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ ++ ++ E +KP+ +T N L A
Sbjct: 555 VEALALYRCLKEEGLKPDNITFTNALYA 582
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD--- 137
VFS++ + T N ++ GY +A H M ++ L D +L + AD
Sbjct: 257 VFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRN 316
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------WC----- 172
+ + K+ H I+ L SD + +++++MY+ C W
Sbjct: 317 LKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAA 376
Query: 173 ---LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
L EA+ +FY+M++E+V PN ++ +++ + + K + + G +
Sbjct: 377 FAELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPN 436
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ TTL+ + F A F +M
Sbjct: 437 LVTWTTLISGLARSGFGYEAILTFQRM 463
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 41/220 (18%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA- 136
R VF + + ++ N+++ Y+ L+ E + EMI L+PD F +P + K+CA
Sbjct: 140 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199
Query: 137 --DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS-CWCLDQ------------------ 175
D+ + +H +K GL D F+ N L++ Y + + D
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 259
Query: 176 ---------PDEAIKIFYRMEIENVK----PNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+E+ + M EN P+ TLV VL AR R++ K VH
Sbjct: 260 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 319
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN 262
+ + L LMD Y KC ++ A +M+F NN
Sbjct: 320 KLRLDKELVLNNALMDMYSKCGCITNA-----QMIFKMNN 354
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 48/236 (20%)
Query: 17 SSDNSPLINLDNINNNNINSQYQAHFCLVSL-EKCSTMREL---KQIHAQMLRTSLFFDP 72
+ N P ++LD I+ F + SL CS ++ L K++H ++R L D
Sbjct: 472 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 531
Query: 73 ------------CADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
C + V+ +F + + ++ + N+++ GY A + +M++
Sbjct: 532 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 591
Query: 120 GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176
G+ +F +C+ + + ++ H+ A+K L D+F+ +LI+MY+ + Q
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 651
Query: 177 D----------------------------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F M+ P+ +T + VLTA
Sbjct: 652 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 31/212 (14%)
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135
+H VF+++ +++ N +V GY EA Y+ M+ G+ PD + FP + ++C
Sbjct: 148 WHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTC 207
Query: 136 ADI---YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------------CLD-- 174
I + +++H+ ++FG + + N L+ MY+ C C+
Sbjct: 208 GGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWN 267
Query: 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
+ + +++F M V+PN +T+ +V A ++ K +H +
Sbjct: 268 AMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKR 327
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
GF V +L+ Y + A +F +M
Sbjct: 328 GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRM 359
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 44/244 (18%)
Query: 54 RELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNSIVRGY 100
R +++HA +LR + C D R VF ++ + N+++ G+
Sbjct: 214 RMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGH 273
Query: 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDS 157
+ + M+ + P+ S+ + ++ K++H A+K G A D
Sbjct: 274 FENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDV 333
Query: 158 FLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIE 189
N+LI MY+S + PD+A++++ ME+
Sbjct: 334 AFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELH 393
Query: 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
NV P+ VT+ + L A A L ++H+ GF +V + L++ Y K K + +A
Sbjct: 394 NVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKA 453
Query: 250 WDLF 253
++F
Sbjct: 454 IEVF 457
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 34/215 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+FS++ + +++ GY +A Y M + + PD S +C
Sbjct: 355 IFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGR 414
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI--------------- 182
+ V +LH A G + N L+ MY+ +D+ E K
Sbjct: 415 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474
Query: 183 ------------FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230
++R + +VKPN+VT + L+A A LR+ K +H V G S
Sbjct: 475 FCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG 534
Query: 231 ELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+D Y KC S AW F K + WN
Sbjct: 535 YVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 569
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 110/240 (45%), Gaps = 45/240 (18%)
Query: 58 QIHAQMLRTSLFFDP-------------CADYHVRLVFSQISNPTIYTCNSIVRGYTNKN 104
QIHA ++ L D C+ ++ +F ++ + + + +I+ G+
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHN 161
H A + E+ ++G+ D M S+ +C+ I K++HS I+ GL SD L N
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQN 558
Query: 162 TLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKP 193
++++Y C +D +EA+++F+ M+ V+P
Sbjct: 559 GIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP 618
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
++++LV++L+A A L+ K +H + GF L +TL+D Y +C + ++ ++F
Sbjct: 619 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 678
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 125/313 (39%), Gaps = 62/313 (19%)
Query: 11 TRTPAL------SSDNSPLINLDNINNNNINSQYQAHFCLVS-LEKCSTMREL---KQIH 60
TP+L S N +L ++ N SQ+ S LE C + + L +Q+H
Sbjct: 78 VETPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVH 137
Query: 61 AQMLRTSLFFDPCADYHVRLVF---------------SQISNPTIYTCNSIVRGYTNKNL 105
A M+ ++ F+ RLVF + + TI+T N+++ Y
Sbjct: 138 AHMITSNALFNSVF-LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGE 196
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNT 162
+ Y EM V G+ D FP + K+C D ++H AIK G S F+ N+
Sbjct: 197 PLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANS 256
Query: 163 LINMYSSCWCLD-----------------------------QPDEAIKIFYRMEIENVKP 193
++ MY+ C L+ Q EA+++F M+ ++ P
Sbjct: 257 IVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAP 316
Query: 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
N T V L A + ++ +H V +S ++ +V + L+ Y + + A ++F
Sbjct: 317 NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 376
Query: 254 VKM----LFPWNN 262
M WN+
Sbjct: 377 YNMDDWDTISWNS 389
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 48/257 (18%)
Query: 44 LVSLEKCSTMRELKQ---IHAQMLRTSLFFD-----PCADYHVRL--------VFSQISN 87
+ +L+ C +KQ IHA +L++S + + + R +F + +
Sbjct: 322 VAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 381
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
+ NS++ G+ L+HEA FYHEM G PD S+ + A + Q+
Sbjct: 382 WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI 441
Query: 145 HSQAIKFGLASDSFLHNTLINMYS--------SCWCLDQPDE------------------ 178
H+ A+K GL SD + N+L++MY+ C PD+
Sbjct: 442 HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 501
Query: 179 --AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
A+++F +++E + + + + ++L A + + + +VK +H + G S + L+ +
Sbjct: 502 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGI 560
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y +C V A +F
Sbjct: 561 VDVYGECGNVDYAARMF 577
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 48/205 (23%)
Query: 47 LEKCSTMR---ELKQIHAQMLRTSL-----------FFDPCA--DYHVRLVFSQISNPTI 90
L CS ++ +K+IH+ ++R L + C DY R+ F I +
Sbjct: 527 LLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARM-FELIEFKDV 585
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ S++ Y + L +EA +H M G+ PD S+ + A + K ++H
Sbjct: 586 VSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGF 645
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDE----------------------------A 179
I+ G + L +TL++MY+ C L++ A
Sbjct: 646 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAA 705
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTA 204
I +F RME E++ P+ + V VL A
Sbjct: 706 IDLFRRMEDESIAPDHIAFVAVLYA 730
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L+ C R L +Q+H ++L + L + C H R +F + +
Sbjct: 69 LQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNV 128
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQ 147
+ N ++R Y H A Y M+ G+ PD F +P K+CA + +++H +
Sbjct: 129 FLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHER 188
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
+ D F+ L++MY+ C C+D +P EA
Sbjct: 189 VLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEA 248
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ + M V P TLV+ ++A A A L + +H GF +LKT+L+D
Sbjct: 249 LSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDM 308
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
Y K +V A LF ++ L WN
Sbjct: 309 YAKSGWVQVARVLFEQLMKRELVSWN 334
>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
Length = 703
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 54/280 (19%)
Query: 53 MRELKQIHAQMLRTSLFFD------------PCADYHVRL-VFSQISNPTIYTCNSIVRG 99
+R+ + HA ++R SL +D D+ + +F +++ + T + +++G
Sbjct: 216 VRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKG 275
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASD 156
Y HE Y EM+ + P+ S+ ++CA D K++H A+ G +
Sbjct: 276 YVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELE 335
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+ L++MY C C ++ P E++ +F M +
Sbjct: 336 VGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLL 395
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++ P+A+T+V VL A + R +H + +GF ++ + L+D Y KC +
Sbjct: 396 DDHVPDAITMVKVLAACSEFGGTRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDS 455
Query: 249 AWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
A +F K + W + M A G GL G+ + A
Sbjct: 456 AVRVFEGTTEKDIVVWGS-----MIAGYGAHGL-GQEAVA 489
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 109/269 (40%), Gaps = 48/269 (17%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV-QGLIPDRFMFPSLFKSCADI-Y 139
+ + P I S+V GY + EA F+ +V QG++ S + A + +
Sbjct: 156 YGVLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGH 215
Query: 140 VEK--QLHSQAIKFGLASDSFLHNTLINMYSS--------------------CW-CL--- 173
V K H+ ++ L D L NT+++ Y W C+
Sbjct: 216 VRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKG 275
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
E ++++ M V+PN+VTLV+VL A A D KRVH+ G
Sbjct: 276 YVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELE 335
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289
V + T L+D Y KC A LF +M P + WA A +G GL T +++ G
Sbjct: 336 VGVATALVDMYMKCSCHEEAMCLFHRM--PKKDVVAWA--AVIG--GL-----TQNELPG 384
Query: 290 PCPKKAHKLFFFSMLKKVHVPGVLIQVHV 318
+ H F ML HVP + V V
Sbjct: 385 ---ESLH--VFKCMLLDDHVPDAITMVKV 408
>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
Length = 677
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 118/268 (44%), Gaps = 47/268 (17%)
Query: 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
F L + K ++ + + +H Q+++T D AD +++L VF ++ +
Sbjct: 98 FLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHR 157
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQA 148
+ + N + G++ EA + ++ + P+ S+ +CA + ++ Q+H A
Sbjct: 158 NLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLA 217
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL-------DQ---------------------PDEAI 180
IK G+ SD ++ ++ MYS+C L DQ P
Sbjct: 218 IKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVF 277
Query: 181 KIFYR-MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+F +E PN+VTLV++L+A ++ +R +++H V + + T L+D
Sbjct: 278 DVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDM 337
Query: 240 YCKCKFVSRAWDLFVKM-----LFPWNN 262
Y KC A+ +F+++ L WN+
Sbjct: 338 YSKCGCWHWAYGIFIELSGSRNLVTWNS 365
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 66 TSLFFDPCADYHVRLVFSQIS----NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121
+ + +D V L F Q+ P T N+++ G++ + EAF F+H+M G+
Sbjct: 368 AGMMLNGQSDIAVEL-FEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGV 426
Query: 122 IPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC-------- 170
I SL ++C+ + K++H I+ + +D F+ LI+MY C
Sbjct: 427 IASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARR 486
Query: 171 -WCLDQ--PDE-------------------AIKIFYRMEIENVKPNAVTLVNVLT 203
+C Q PD+ A +IF +M+ E V+PN+ TLV++L+
Sbjct: 487 VFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILS 541
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+DI VE L Q GL DS NT+I+ +S Q EA K F++M+ V +
Sbjct: 376 SDIAVE--LFEQLEPEGLEPDSATWNTMISGFSQ---QGQVVEAFKFFHKMQSAGVIASL 430
Query: 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
++ ++L A + L++ K +H + + + T L+D Y KC A +F +
Sbjct: 431 KSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQ 490
Query: 256 MLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
++ W +A + G G++ +A +I
Sbjct: 491 FQIKPDDPAFW--NAMISGYGRNGKYQSAFEI 520
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 40/215 (18%)
Query: 49 KCSTMRELKQIHAQMLRTSL--------FFDPCADYH-VRLVFSQISNPTIYTCNSIVRG 99
KC ++ E +Q+ ++M ++ + C D VFS++ + + N ++ G
Sbjct: 411 KCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAG 470
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASD 156
Y + F M +G PDR ++ ++C A + K +H++A+K GL SD
Sbjct: 471 YAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESD 530
Query: 157 SFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRMEI 188
+ + +LI MYS C + + EA+ +F RM
Sbjct: 531 TVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK 590
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
E V PN +TL V++A +RA ++ + + + + E
Sbjct: 591 ERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 51/278 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF +++ + T +S++ Y N +AF + M + P+R F S+ K+C + +
Sbjct: 113 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSI 172
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------- 174
+++H+ G+ +D + LI MYS C +
Sbjct: 173 LEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA 232
Query: 175 -----QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+ +EA +++ +M + PNAVT V++L + L +R+H + E G +
Sbjct: 233 NAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD 292
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGLVGRHSTAH 285
+ + L+ YCKC V A ++F +M + W+ AM A G + S
Sbjct: 293 MIVANALITMYCKCNSVQEAREIFDRMSKRDVISWS-----AMIAGYAQSGYKDKESIDE 347
Query: 286 --------QISGPCPKKAHKLFFFSMLKKVHVPGVLIQ 315
+ G P +K+ F S+L+ G L Q
Sbjct: 348 VFQLLERMRREGVFP---NKVTFMSILRACTAHGALEQ 382
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 69 FFDPCADYHVRL-VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C + V VF +++ + + +I++ +EAF Y +M+ G+ P+
Sbjct: 201 MYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVT 260
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------- 176
F SL SC + +++HS + GL +D + N LI MY C + +
Sbjct: 261 FVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS 320
Query: 177 -------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
DE ++ RM E V PN VT +++L A L
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGAL 380
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNNY 263
+++H + + GF L+T + + Y KC + A +F KM + W ++
Sbjct: 381 EQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSF 436
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 96/264 (36%), Gaps = 75/264 (28%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYT-----NKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131
R +F ++S + + ++++ GY +K E F M +G+ P++ F S+
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370
Query: 132 FKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE---------- 178
++C + +Q+H++ K G D L + NMY+ C + + ++
Sbjct: 371 LRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430
Query: 179 ------------------AIKIFYRMEIENV----------------------------- 191
A K+F M NV
Sbjct: 431 VAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAE 490
Query: 192 --KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249
+P+ VT++ +L A L K VH + G S + T+L+ Y KC V+ A
Sbjct: 491 GFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEA 550
Query: 250 WDLFVKM----LFPWN----NYGQ 265
+F KM WN YGQ
Sbjct: 551 RTVFDKMSNRDTVAWNAMLAGYGQ 574
>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
Length = 848
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 44/233 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F+ I + S++ G+ + EA FY+ M V G PD + S+ +C +
Sbjct: 414 IFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKN 473
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYS---------------------------SC 170
+ + +H AIK GL D F+ ++L++MYS SC
Sbjct: 474 VNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISC 533
Query: 171 WCLDQ-PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+C + PD +I +F +M + P++V++ +VL + + LR K VH + S
Sbjct: 534 YCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSD 593
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN-------NYGQW--AMS 269
++L+ L+D Y KC F+ A +F M L WN ++G W AMS
Sbjct: 594 LQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMS 646
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 35/217 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
VF Q+S N+++ Y ++ Y +M V + PD ++ SC
Sbjct: 313 VFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGS 372
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
+ +H++ +K + S+ L + L+ MYS C D +
Sbjct: 373 YDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISG 432
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA++ + M + KP++ + +V++A +++ +H +SG
Sbjct: 433 FCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQD 492
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
V + ++L+D Y K F + ++F M L WN+
Sbjct: 493 VFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNS 529
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 111/286 (38%), Gaps = 66/286 (23%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFF-DP------------CADYH------VRLVFSQ 84
L+ C + L K IH+ ++ F+ DP C + +L S+
Sbjct: 56 LKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESE 115
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK-SCADIYVEKQ 143
+S + NSIV GY E + M + G+ PD + L S + KQ
Sbjct: 116 VSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGHLGYAKQ 175
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI--------------- 188
+H +++ D FL + LI MY SC +P +A ++F +E
Sbjct: 176 IHGYSVRKVFYGDPFLESGLIYMYFSC---GRPLDAWRLFKELEDKGNVVAWNVMIGGFG 232
Query: 189 -----------------ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
ENVK + + + L+A + + +VH + + GF +
Sbjct: 233 ENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPY 292
Query: 232 LKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVG 273
+ T+L+ Y KCK V A ++F VK WN +SA VG
Sbjct: 293 VCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNA----MISAYVG 334
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 69/190 (36%), Gaps = 39/190 (20%)
Query: 125 RFMFPSLFKSCA---DIYVEKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQP---- 176
RF +PSL K+C ++ K +HS I G SD ++ +LIN Y C
Sbjct: 49 RFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVF 108
Query: 177 -----------------------------DEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
E I F RM++ V+P+A +L +L A
Sbjct: 109 DKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLG--AS 166
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
L K++H F+ L++ L+ Y C AW LF ++ N
Sbjct: 167 DGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNV 226
Query: 268 MSATVGPQGL 277
M G GL
Sbjct: 227 MIGGFGENGL 236
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 39/210 (18%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIK 150
++++ GY+N + F EM++ G PD S+ SC+ I + + +H AIK
Sbjct: 380 STMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIK 439
Query: 151 FGLASDSFLHNTLINMY------SSCWCL----DQPD------------------EAIKI 182
+ + + N+L++MY ++ W + Q D EAI +
Sbjct: 440 NSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIIL 499
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +M E V PN VT + VL+A A L +++H+ + E+GF S++ ++T L+D Y K
Sbjct: 500 FDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAK 559
Query: 243 CKFVSRAWDLF----VKMLFPWN----NYG 264
C + + LF + + WN NYG
Sbjct: 560 CGELETSRKLFNSTEERDVILWNVMISNYG 589
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 42/221 (19%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F I + I+ NSI++ + + + AF FY +M +P++F P + +CA++ +
Sbjct: 64 LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 123
Query: 141 ---EKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+H K GL +S + ++ I MYS C + A +F + +++V
Sbjct: 124 FNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKC---GHVESASIMFSEITVKDVVTWTA 180
Query: 197 TLVNVLTARARARDLRTVKRVHK----------------CVD---------------ESG 225
+V + R L+ + +H+ CVD ++G
Sbjct: 181 LIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNG 240
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
F +K+T++ Y +C A+ F K+ L W +
Sbjct: 241 FLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTS 281
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 82 FSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADI 138
F ++ + + SI+ ++ L E + EM +IPD + + F + I
Sbjct: 268 FCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRI 327
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLINMY-------------------SSCWC------- 172
+ K H++ +K A HN L++MY S W
Sbjct: 328 FEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSEDWSTMILGYS 387
Query: 173 -LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231
+ Q ++ I M + +P+ +LV+V+++ ++ + + +H ++ +V
Sbjct: 388 NMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVS 447
Query: 232 LKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
+ +LMD Y K V+ W +F + L WN
Sbjct: 448 VANSLMDMYGKSGHVTATWRIFHRTLQRDVISWN 481
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 92/232 (39%), Gaps = 51/232 (21%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
++FS+I+ + T +++ GY N EM G P+ S F++C D+
Sbjct: 165 IMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLD 224
Query: 139 -YVE-KQLHSQAIKFGLASDSFLHNTLINMYS---------SCWC-LDQPD--------- 177
VE K LH A+K G + +T+++MYS C+C LDQ D
Sbjct: 225 ALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIA 284
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KCVDE 223
E + +F+ M+ + P+ + + +L + + K H +C
Sbjct: 285 VHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCAL 344
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLF----------VKMLFPWNNYGQ 265
SG +H L+ YCK + A +F M+ ++N GQ
Sbjct: 345 SGI-TH----NALLSMYCKFGHLGTANKIFHSFHKSSEDWSTMILGYSNMGQ 391
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,893,292,286
Number of Sequences: 23463169
Number of extensions: 190505173
Number of successful extensions: 586910
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3413
Number of HSP's successfully gapped in prelim test: 3750
Number of HSP's that attempted gapping in prelim test: 538291
Number of HSP's gapped (non-prelim): 37823
length of query: 323
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 181
effective length of database: 9,027,425,369
effective search space: 1633963991789
effective search space used: 1633963991789
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 77 (34.3 bits)