BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040801
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OMB|A Chain A, Crystal Structure Of Extracellular Solute-Binding Protein
From Bifidobacterium Longum Subsp. Infantis
Length = 535
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL 144
+S Y N +V+ + + + E +YH++I +GLIP + AD + +
Sbjct: 243 VSEYGFYAKNGVVKSFLTSDEYKEVIKYYHKLISEGLIPAEWATKDDDAYNADQISDGKT 302
Query: 145 HSQAIKFGLA-SDSF 158
+ FG + SD+F
Sbjct: 303 AKTGVVFGWSPSDNF 317
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 121 LIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180
+P+R FPS K+ AD +H++ +K G+ SD+ M S LD ++ +
Sbjct: 65 FVPNRQTFPSGIKALADY-----VHAKGLKLGIYSDAGSQTCSNKMPGS---LDHEEQDV 116
Query: 181 KIFYRMEIENVK 192
K F ++ +K
Sbjct: 117 KTFASWGVDYLK 128
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 140 VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE 178
+EKQLH Q + G DSF +TL ++C Q D+
Sbjct: 218 LEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDK 256
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+ +S IY CNS VR YT YHE ++ GL + + +F C
Sbjct: 108 FAYDNVSAVYIYNCNSWVREYTK----------YHERLLTGLKGSKRL---VFIDCPGKL 154
Query: 140 VEKQLHSQ----AIKFGLASD-SFLHNTL 163
E H Q A L D HN L
Sbjct: 155 AEHIEHEQQKLPAATLALEEDLKVFHNAL 183
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+ +S IY CNS VR YT YHE ++ GL + + +F C
Sbjct: 109 FAYDNVSAVYIYNCNSWVREYTK----------YHERLLTGLKGSKRL---VFIDCPGKL 155
Query: 140 VEKQLHSQ----AIKFGLASD-SFLHNTL 163
E H Q A L D HN L
Sbjct: 156 AEHIEHEQQKLPAATLALEEDLKVFHNAL 184
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+ +S IY CNS VR YT YHE ++ GL + + +F C
Sbjct: 89 FAYDNVSAVYIYNCNSWVREYTK----------YHERLLTGLKGSKRL---VFIDCPGKL 135
Query: 140 VEKQLHSQ----AIKFGLASD-SFLHNTL 163
E H Q A L D HN L
Sbjct: 136 AEHIEHEQQKLPAATLALEEDLKVFHNAL 164
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+ +S IY CNS VR YT YHE ++ GL + + +F C
Sbjct: 89 FAYDNVSAVYIYNCNSWVREYTK----------YHERLLTGLKGSKRL---VFIDCPGKL 135
Query: 140 VEKQLHSQ----AIKFGLASD-SFLHNTL 163
E H Q A L D HN L
Sbjct: 136 AEHIEHEQQKLPAATLALEEDLKVFHNAL 164
>pdb|3PEG|B Chain B, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
pdb|3PEG|A Chain A, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
Length = 290
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
+ +S IY CNS VR YT YHE ++ GL + + +F C
Sbjct: 108 FAYDNVSAVYIYNCNSWVREYTK----------YHERLLTGLKGSKRL---VFIDCPGKL 154
Query: 140 VEKQLHSQ 147
E H Q
Sbjct: 155 AEHIEHEQ 162
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 51 STMRE--LKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPT--IYTCNSIVRG-YTNKNL 105
+T R+ LK I Q L T++F D +D H + + I+ P + N I G Y N +
Sbjct: 181 ATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVI 240
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSL-FKSCADI 138
H A+ + IV G++ +L +K DI
Sbjct: 241 HKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDI 274
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 51 STMRE--LKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPT--IYTCNSIVRG-YTNKNL 105
+T R+ LK I Q L T++F D +D H + + I+ P + N I G Y N +
Sbjct: 182 ATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVI 241
Query: 106 HHEAFLFYHEMIVQGLIPDRFMFPSL-FKSCADI 138
H A+ + IV G++ +L +K DI
Sbjct: 242 HKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDI 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,682,928
Number of Sequences: 62578
Number of extensions: 310962
Number of successful extensions: 573
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 10
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)