BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040801
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 49/279 (17%)
Query: 25 NLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------ 72
N N N N++ H L+ E+C ++R+LKQ H M+RT F DP
Sbjct: 17 NFSNPNQPTTNNERSRHISLI--ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAAL 74
Query: 73 ---CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMF 128
+ + R VF +I P + N+++R Y + + + +M+ + P+++ F
Sbjct: 75 SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTF 134
Query: 129 PSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------- 175
P L K+ A++ + + LH A+K + SD F+ N+LI+ Y SC LD
Sbjct: 135 PFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 194
Query: 176 ------------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV 217
PD+A+++F +ME E+VK + VT+V VL+A A+ R+L ++V
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++E+ ++ L ++D Y KC + A LF M
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 41/197 (20%)
Query: 49 KCSTMRELKQIHAQMLRT-----SLFFDPCA---DYHV-RLVFSQISNPTIYTCNSIVRG 99
KC ++ + K++ M + D A DY R V + + I N+++
Sbjct: 279 KCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISA 338
Query: 100 YTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLAS 155
Y +EA + +HE+ +Q + ++ S +CA + + + +HS K G+
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398
Query: 156 DSFLHNTLINMYSSCWCLDQP----------------------------DEAIKIFYRME 187
+ + + LI+MYS C L++ +EA+ +FY+M+
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458
Query: 188 IENVKPNAVTLVNVLTA 204
NVKPN VT NV A
Sbjct: 459 EANVKPNGVTFTNVFCA 475
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHK 219
N LI+ Y +P+EA+ +F+ ++++ N+K N +TLV+ L+A A+ L + +H
Sbjct: 333 NALISAYEQN---GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ + G + + + L+ Y KC + ++ ++F
Sbjct: 390 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 46/258 (17%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL--------FFDPCADY-------HVRLVFSQISNPTIY 91
+ KC+++REL QI A +++ + + C + + R +F +S P I
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIV 95
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
NS+ RGY+ E F + E++ G++PD + FPSL K+CA + +QLH +
Sbjct: 96 IFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLS 155
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEAI 180
+K GL + ++ TLINMY+ C +D +P+EA+
Sbjct: 156 MKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEAL 215
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+F M+ + +KPN +TL++VL++ A L K +HK + F +V++ T L+D +
Sbjct: 216 SLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMF 275
Query: 241 CKCKFVSRAWDLFVKMLF 258
KC + A +F KM +
Sbjct: 276 AKCGSLDDAVSIFEKMRY 293
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYH-VRLVFSQISNPTIYTCNSIVR 98
+ E +Q+H ++ L + C D R VF +I P + N+++
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLAS 155
GY +N +EA + EM + L P+ S+ SCA + + K +H A K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263
Query: 156 DSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRME 187
++ LI+M++ C LD + ++++ +F RM
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323
Query: 188 IENVKPNAVTLVNVLTA 204
ENV+P+ +T + +L A
Sbjct: 324 SENVQPDEITFLGLLNA 340
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 128/240 (53%), Gaps = 27/240 (11%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADYHVRL-VFSQISNPTI 90
L L KC+ + ++KQ+HAQ++R +L D C ++ + VF+Q+ P +
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ CNS++R + + ++AF + EM GL D F +P L K+C+ + V K +H+
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207
K GL+SD ++ N LI+ YS C L D A+K+F +M + + V+ ++L +
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRD-AMKLFEKMS----ERDTVSWNSMLGGLVK 197
Query: 208 ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
A +LR +R+ + + S T++D Y +C+ +S+A++LF KM P N W+
Sbjct: 198 AGELRDARRLFDEMPQRDLISW----NTMLDGYARCREMSKAFELFEKM--PERNTVSWS 251
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +F ++ + + N+++ GY +AF + +M + + M + D+
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMG-YSKAGDM 263
Query: 139 YVEKQLHSQAIKFGLASDSFLHNTLI-NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ + + K L + + + T+I Y+ L + D ++ +M +K +A
Sbjct: 264 EMARVMFD---KMPLPAKNVVTWTIIIAGYAEKGLLKEAD---RLVDQMVASGLKFDAAA 317
Query: 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF---- 253
++++L A + L R+H + S S+ + L+D Y KC + +A+D+F
Sbjct: 318 VISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIP 377
Query: 254 VKMLFPWN 261
K L WN
Sbjct: 378 KKDLVSWN 385
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 133/297 (44%), Gaps = 58/297 (19%)
Query: 8 HHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSL-EKCSTMRELKQIHAQMLRT 66
H Q RT +L IN N + H L+SL EKC + LKQI AQM+
Sbjct: 26 HSQRRTRSLPHHRDKPINW------NSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIIN 79
Query: 67 SLFFDP---------CA-------DYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110
L DP CA DY V+ + I NP I++ N +RG++ E+F
Sbjct: 80 GLILDPFASSRLIAFCALSESRYLDYSVK-ILKGIENPNIFSWNVTIRGFSESENPKESF 138
Query: 111 LFYHEMIVQGLI---PDRFMFPSLFKSCADIYVEKQLH---SQAIKFGLASDSFLHNTLI 164
L Y +M+ G PD F +P LFK CAD+ + H +K L S +HN I
Sbjct: 139 LLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASI 198
Query: 165 NMYSSC--------------------W-CL-------DQPDEAIKIFYRMEIENVKPNAV 196
+M++SC W CL + ++AI ++ ME E VKP+ V
Sbjct: 199 HMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDV 258
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
T++ ++++ + DL K ++ V E+G + L LMD + KC + A +F
Sbjct: 259 TMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 101/279 (36%), Gaps = 67/279 (24%)
Query: 69 FFDPCADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
F C D + R VF + + + N ++ GY +A Y M +G+ PD
Sbjct: 200 MFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVT 259
Query: 128 FPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINM------------------ 166
L SC D+ K+ + + GL L N L++M
Sbjct: 260 MIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE 319
Query: 167 -------------YSSCWCLD----------------------------QPDEAIKIFYR 185
Y+ C LD + +A+ +F
Sbjct: 320 KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQE 379
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M+ N KP+ +T+++ L+A ++ L +H+ +++ +V L T+L+D Y KC
Sbjct: 380 MQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGN 439
Query: 246 VSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+S A +F + +A +G L G STA
Sbjct: 440 ISEALSVFHGI----QTRNSLTYTAIIGGLALHGDASTA 474
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 20/269 (7%)
Query: 49 KCSTMRELKQIHAQMLRTSLF--------FDPCADYHV-RLVFSQISNPTIYTCNSIVRG 99
KC + E ++I + + ++ + C V R +F + + N+++ G
Sbjct: 304 KCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGG 363
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASD 156
+A + EM PD +C+ + V +H K+ L+ +
Sbjct: 364 SVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLN 423
Query: 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
L +L++MY+ C + EA+ +F+ ++ N++T ++ A D T
Sbjct: 424 VALGTSLVDMYAKCGNI---SEALSVFHGIQTR----NSLTYTAIIGGLALHGDASTAIS 476
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQ 275
+ ++G L+ A C + D F +M +N Q S V
Sbjct: 477 YFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLL 536
Query: 276 GLVGRHSTAHQISGPCPKKAHKLFFFSML 304
G G A ++ P +A + ++L
Sbjct: 537 GRAGLLEEADRLMESMPMEADAAVWGALL 565
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 116/257 (45%), Gaps = 50/257 (19%)
Query: 55 ELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQISNPTIYTCNSIVRGYT 101
+LKQIHA++L L F D R VF + P I+ N+I+RGY+
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGLASDSF 158
N +A L Y M + + PD F FP L K+C+ + + + +H+Q + G +D F
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 159 LHNTLINMYSSCWCLD------------------------------QPDEAIKIFYRMEI 188
+ N LI +Y+ C L +P EA++IF +M
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+VKP+ V LV+VL A +DL+ + +H V + G +L +L Y KC V+
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 249 AWDLFVKMLFP----WN 261
A LF KM P WN
Sbjct: 276 AKILFDKMKSPNLILWN 292
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 44/196 (22%)
Query: 53 MRELKQIHAQMLRTSLFFDP------------CADYH-VRLVFSQISNPTIYTCNSIVRG 99
+++ + IHA +++ L +P C +++F ++ +P + N+++ G
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA---SD 156
Y EA +HEMI + + PD S +CA + +Q S G + D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357
Query: 157 SFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEI 188
F+ + LI+M++ C ++ + EAI ++ ME
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417
Query: 189 ENVKPNAVTLVNVLTA 204
V PN VT + +L A
Sbjct: 418 GGVHPNDVTFLGLLMA 433
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 61/291 (20%)
Query: 47 LEKCSTMRELKQ---IHAQMLRTSLFFDPCADYHV-----------------RLVFSQIS 86
L+ CS + L+ +HAQ+ R L FD AD V R VF +
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFR--LGFD--ADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 87 NP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVE 141
P TI + +IV Y EA + +M + PD S+ F D+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------------- 177
+ +H+ +K GL + L +L MY+ C + P+
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233
EAI +F+ M ++V+P+ +++ + ++A A+ L + +++ V S + V +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS 361
Query: 234 TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ L+D + KC V A +F + L + SA + GL GR A
Sbjct: 362 SALIDMFAKCGSVEGARLVFDRTL----DRDVVVWSAMIVGYGLHGRAREA 408
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 45/195 (23%)
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159
YTN +H ++F + SL S KQ+H++ + GL FL
Sbjct: 13 YTNSGIHSDSF-----------------YASLIDSATHKAQLKQIHARLLVLGLQFSGFL 55
Query: 160 HNTLINMYSSCWCL--------DQP--------------------DEAIKIFYRMEIENV 191
LI+ SS + D P +A+ ++ M++ V
Sbjct: 56 ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P++ T ++L A + L+ + VH V GF + V ++ L+ Y KC+ + A
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSART 175
Query: 252 LFVKMLFPWNNYGQW 266
+F + P W
Sbjct: 176 VFEGLPLPERTIVSW 190
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 124/278 (44%), Gaps = 59/278 (21%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY----HVRLVFSQISN 87
L LE C ++ EL Q+H M+++S+ F C + + R VF I
Sbjct: 10 LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQL 144
P++Y NS++RGY+N +A +FY EM+ +G PD F FP + K+C+ DI +
Sbjct: 70 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC---------------WCL-------------DQP 176
H +K G + ++ L++MY C W + ++
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189
Query: 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF--------WS 228
+AI+ F M+ VK N +V++L A R +D+ T K H + GF
Sbjct: 190 SDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGF 249
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
+V L T+L+D Y KC + A LF M L WN+
Sbjct: 250 NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNS 287
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 63 MLRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119
+L TSL + C D R +F + T+ + NSI+ GY+ EA + +M+
Sbjct: 252 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 311
Query: 120 GLIPDRFMF-----PSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS----- 169
G+ PD+ F S+ + C+ + + +H+ K G D+ + L+NMY+
Sbjct: 312 GIAPDKVTFLSVIRASMIQGCSQL--GQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAE 369
Query: 170 ---------------CWCL--------DQPDEAIKIFYRM-EIENVKPNAVTLVNVLTA 204
W + +EA+ IF RM E N P+ +T + VL A
Sbjct: 370 SAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYA 428
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 49/257 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLR----------TSLFFDPCA-DYHVRLVFSQ--ISNPTIY- 91
SL+ C T+ ELK H + + T L C L F++ N Y
Sbjct: 38 SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97
Query: 92 TC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLH 145
TC NS++RGY + L +EA L + M+ G+ PD++ FP +CA + Q+H
Sbjct: 98 TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------------------------PD 177
+K G A D F+ N+L++ Y+ C LD
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217
Query: 178 EAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
+A+ +F+RM E V PN+VT+V V++A A+ DL T ++V+ + SG + + + L
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSAL 277
Query: 237 MDAYCKCKFVSRAWDLF 253
+D Y KC + A LF
Sbjct: 278 VDMYMKCNAIDVAKRLF 294
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRF 126
F+ C + R VF ++S + + S++ GY ++ +A LF+ + + + P+
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 127 MFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------ 177
+ +CA D+ +++++ G+ + + + L++MY C +D
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297
Query: 178 ----------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
EA+ +F M V+P+ +++++ +++ ++ R++ K
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
H V +GF S + L+D Y KC A+ +F +M + WN+
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 58/228 (25%)
Query: 44 LVSLEKCSTMREL---KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISN 87
L ++ CS +R + K H +LR + D +++ +F ++SN
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400
Query: 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHS- 146
T+ T NSIV GY A+ + M P EK + S
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETM------------P-----------EKNIVSW 437
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTAR 205
I GL S +EAI++F M+ E V + VT++++ +A
Sbjct: 438 NTIISGLVQGSLF-----------------EEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K ++ ++++G V L TTL+D + +C A +F
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIF 528
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 108 EAFLFYHEMIVQGLIPDRFMFPSLF-KSCA-----DIYVEKQLHSQAIKFGLASDSFLHN 161
E +F+ + QGL D L +SC + K++ + +G F++N
Sbjct: 47 ELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTC---FMYN 103
Query: 162 TLINMY-SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
+LI Y SS C +EAI +F RM + P+ T L+A A++R ++H
Sbjct: 104 SLIRGYASSGLC----NEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + G+ + ++ +L+ Y +C + A +F +M
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 51/274 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL----------FFDPCADY----- 76
NN + Q CL L++C + E KQ+HA+ ++ SL CA
Sbjct: 24 NNFGGKEQE--CLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENS 81
Query: 77 --HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134
+ +F I +P + N+++RGY N EA FY+EM+ +G PD F +P L K+
Sbjct: 82 MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141
Query: 135 CA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
C I KQ+H Q K GL +D F+ N+LINMY C ++
Sbjct: 142 CTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASW 201
Query: 177 -------------DEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
E + +F M E N+K +V+ L A A L +H +
Sbjct: 202 SSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLL 261
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ ++ ++T+L+D Y KC + +A +F KM
Sbjct: 262 RNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM 295
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 82/296 (27%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFD--------------PCADYHVRLVFSQISNPTIYTCN 94
+CSTMRELKQIHA +++T L D P + LVF++I++ + N
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWN 93
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
+I+RG++ + A + +M+ + P R +PS+FK+ + + QLH I
Sbjct: 94 TIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVI 153
Query: 150 KFGLASDSFLHNTLINMY-------------------------------SSCWCLDQPD- 177
K GL DSF+ NT+++MY + C +DQ
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQN 213
Query: 178 ---------------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
+A+ +F M+ ++VKP+ T+V++L A A
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGA 273
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWNN 262
+ +H+ + + F + + T L+D YCKC + ++F K L WN+
Sbjct: 274 SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNS 329
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL 153
NS++ G N A + E+ GL PD F + +CA ++H F L
Sbjct: 328 NSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAH---SGEVHRADEFFRL 384
Query: 154 ASDSFL------HNTL-INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206
+ ++ H TL +N+ L++ + IK M +E + V ++L+A
Sbjct: 385 MKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIK---NMPVEE---DTVIWSSLLSACR 438
Query: 207 RARDLRTVKRVHKCV 221
+ ++ KR KC+
Sbjct: 439 KIGNVEMAKRAAKCL 453
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD- 137
R VF +++ + + NSI+ GY + L + + +M+V G+ D S+F CAD
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309
Query: 138 --IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ-------------------- 175
I + + +HS +K + + NTL++MYS C LD
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369
Query: 176 --------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
EA+K+F ME E + P+ T+ VL AR R L KRVH+ + E+
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + LMD Y KC + A +F VK + WN
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 49/256 (19%)
Query: 69 FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM 127
+ C D + VF ++S+ ++ + S++ GY + L EA + EM +G+ PD +
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 128 FPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
++ CA + K++H + L D F+ N L++MY+ C + EA +F
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ---EAELVFS 456
Query: 185 RMEIENV---------------KPNAVTLVNVLTARAR-ARDLRTV-------------- 214
M ++++ A++L N+L R + D RTV
Sbjct: 457 EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFD 516
Query: 215 --KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAM 268
+ +H + +G++S + +L+D Y KC + A LF K L W M
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT-----VM 571
Query: 269 SATVGPQGLVGRHSTA 284
A G G G+ + A
Sbjct: 572 IAGYGMHGF-GKEAIA 586
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 50/257 (19%)
Query: 51 STMRELKQIHAQMLRTS------------LFF-----DPCADYHVRLVFSQISNP-TIYT 92
S++ +L+QIHA +R +F+ P + VFS+I P ++
Sbjct: 28 SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSC---ADIYVEKQLHSQA 148
N+++RGY AF Y EM V GL+ PD +P L K+ AD+ + + +HS
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 149 IKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDEAI 180
I+ G S ++ N+L+++Y++C + +P+EA+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207
Query: 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
++ M + +KP+ T+V++L+A A+ L KRVH + + G ++ L+D Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267
Query: 241 CKCKFVSRAWDLFVKML 257
+C V A LF +M+
Sbjct: 268 ARCGRVEEAKTLFDEMV 284
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 51/273 (18%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQML----------RTSLFFDPCA------D 75
+I++ Y ++ + C T + KQ+H+Q + + LF C+
Sbjct: 28 ESISNDYSRFISILGV--CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS 85
Query: 76 YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP----SL 131
Y +L F +I P + N++++G++ + E Y M+ +G+ PD FP L
Sbjct: 86 YAYKL-FVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGL 144
Query: 132 FKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------- 174
+ + K+LH +KFGL S+ ++ N L+ MYS C +D
Sbjct: 145 KRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSW 204
Query: 175 -----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
+ +E+I++ ME V P +VTL+ VL+A ++ +D KRVH+ V E
Sbjct: 205 NLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE 264
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ L+ L++AY C + A +F M
Sbjct: 265 CKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R F Q+ + ++ GY +E+ + EM G+IPD F S+ +CA
Sbjct: 322 RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL 381
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC----------LDQPD-------- 177
+ + + + + K + +D + N LI+MY C C +DQ D
Sbjct: 382 GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMV 441
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAIK+F++M+ +++P+ +T + VL+A
Sbjct: 442 VGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215
D +I+ Y C + E+++IF M+ + P+ T+V+VLTA A L +
Sbjct: 332 DRISWTIMIDGYLRAGCFN---ESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGE 388
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ +D++ + V + L+D Y KC +A +F M
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDM 429
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF + +++ N ++ GY + E+ EM + P + +C+ +
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKV 249
Query: 139 YVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+ K++H + L N L+N Y++C + D A++IF M+ +V
Sbjct: 250 KDKDLCKRVHEYVSECKTEPSLRLENALVNAYAAC---GEMDIAVRIFRSMKARDV 302
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL----FFDPCA----DY-HVRLVFSQISNPTIYTCN 94
L L+KC ++ +L+QI AQML S+ F P A D+ + +FS P Y+ N
Sbjct: 41 LFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFN 100
Query: 95 SIVRGYTNK-NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
++RG TN N H A Y M GL PD+F + +F +CA +I V + +HS K
Sbjct: 101 YMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFK 160
Query: 151 FGLASDSFLHNTLINMYSSCW-------CLDQPDE---------------------AIKI 182
GL D ++++LI MY+ C D+ E A+ +
Sbjct: 161 VGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDL 220
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F +ME E +P+ TLV++L A + DLRT + + + L + L+ Y K
Sbjct: 221 FRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 280
Query: 243 CKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQI 287
C + A +F +M+ + W TV Q G+ S A ++
Sbjct: 281 CGDLDSARRVFNQMI--KKDRVAWTAMITVYSQN--GKSSEAFKL 321
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 110/285 (38%), Gaps = 47/285 (16%)
Query: 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL------------FFDPCADY-HVRLVFS 83
++ +F ++ K + + +H+ + + L + C + R +F
Sbjct: 132 KFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFD 191
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYV 140
+I+ + NS++ GY+ +A + +M +G PD S+ +C D+
Sbjct: 192 EITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT 251
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------------------- 174
+ L AI + +FL + LI+MY C LD
Sbjct: 252 GRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 311
Query: 175 --QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ EA K+F+ ME V P+A TL VL+A L K++ E ++ +
Sbjct: 312 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 371
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
T L+D Y KC V A +F M P N W AM QG
Sbjct: 372 ATGLVDMYGKCGRVEEALRVFEAM--PVKNEATWNAMITAYAHQG 414
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 63/273 (23%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFDPCA-----------------DYHVRLVFSQISNPTI 90
E CS M +LKQ+HA LRT+ +P +Y R VF I N +
Sbjct: 56 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR-VFDSIENHSS 114
Query: 91 YTCNSIVRGYTNK-NLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIY---VEKQLH 145
+ N+++R + + EAF+ Y +M+ +G PD+ FP + K+CA I+ KQ+H
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 174
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPD 177
Q +K G D +++N LI++Y SC CLD + D
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 234
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-----KCVDESGFWSHVEL 232
A+++F M+ + +P+ T+ +VL+A A L H KC + V +
Sbjct: 235 SALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC--DVDVAMDVLV 291
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
K +L++ YCKC + A +F M L WN
Sbjct: 292 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 324
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F+Q+ I + ++++GY+ + EA +++M+ +G+IPD ++ +CA + V
Sbjct: 243 LFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGV 302
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
K++H ++ G D ++ + L++MYS C L++
Sbjct: 303 LEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEG 362
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWS 228
EA+K+F +ME+E+VKPNAVT V+V TA A + +R+++ +D+ S
Sbjct: 363 LAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVS 422
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
+VE ++ + K + A +L M F N
Sbjct: 423 NVEHYGGMVHLFSKAGLIYEALELIGNMEFEPN 455
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI +FY+M E + P+ VT+ V++A A L K VH ++GF V + + L+
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 238 DAYCKCKFVSRAWDLFV----KMLFPWNN 262
D Y KC + RA +F K LF WN+
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNS 358
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 33/234 (14%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPCADYHVRL-----VFSQISNPTIYT 92
+++CST + L+ A M++TSL F C + RL +Q+ P ++
Sbjct: 35 IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFK-RLDLAVSTMTQMQEPNVFV 93
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK--SCADIYVEKQLHSQAIK 150
N++ +G+ + + Y M+ + P + + SL K S A + E L + K
Sbjct: 94 YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGE-SLQAHIWK 152
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
FG + TLI+ YS+ + EA K+F M + + + +++A R D
Sbjct: 153 FGFGFHVKIQTTLIDFYSAT---GRIREARKVFDEMP----ERDDIAWTTMVSAYRRVLD 205
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPW 260
+ + + + E + L++ Y + +A LF VK + W
Sbjct: 206 MDSANSLANQMSE----KNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISW 255
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--AD 137
LVF + ++ NSI+ G EA + +M ++ + P+ F S+F +C A
Sbjct: 343 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAG 402
Query: 138 IYVE-KQLHSQAI-KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195
+ E ++++ I + + S+ + +++++S + EA+++ ME E PNA
Sbjct: 403 LVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLI---YEALELIGNMEFE---PNA 456
Query: 196 V 196
V
Sbjct: 457 V 457
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 47/269 (17%)
Query: 53 MRELKQIHAQM----------LRTSLFFDPC---ADYHVRLVFSQISNPTIYTCNSIVRG 99
+++L+Q+HA + L T L C A + L+F + P + NS+++
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQAIKFGLASD 156
+ L +Y M+ + P + F S+ KSCAD + + K +H A+ G D
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141
Query: 157 SFLHNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEI 188
+++ L+ YS C ++ DEAI++FY+M
Sbjct: 142 TYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 201
Query: 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
+P++ T V++L+A A+ + VH+ + G +V+L T L++ Y +C V +
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 261
Query: 249 AWDLFVKMLFPWNNYGQW-AMSATVGPQG 276
A ++F KM N W AM + G G
Sbjct: 262 AREVFDKM--KETNVAAWTAMISAYGTHG 288
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKS 134
VR VF + + + N+I+ GY ++ +A EM L PD F S +F
Sbjct: 195 VRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSE 254
Query: 135 CADIYVEKQLHSQAIKFGLASDSFLHNTLINMY-------------SSCWCLD------- 174
D+ K++H I+ G+ SD ++ ++L++MY S +C D
Sbjct: 255 YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSL 314
Query: 175 --------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF 226
+ +EA+++F +M VKP AV +V+ A A L K++H V GF
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S++ + + L+D Y KC + A +F +M
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRM 404
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 55 ELKQIHAQMLRT------------SLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN 102
+ KQ+HAQ +RT S++ + + L+F + +P + S++R +T+
Sbjct: 23 QAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFL 159
++L +A + EM G PD +FPS+ KSC D+ + +H ++ G+ D +
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRM 186
N L+NMY+ + +F M
Sbjct: 143 GNALMNMYAKLLGMGSKISVGNVFDEM 169
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
N++ +GYT ++AF Y M + G+ PD + ++CA D ++ Q IK
Sbjct: 471 NALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIK 530
Query: 151 FGLASDSFLHNTLINMYSSCWCL-----------------------------DQPDEAIK 181
G S+ + + LINM++ C L Q +EA+
Sbjct: 531 HGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVA 590
Query: 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241
F +M++E +PNAVT VN++ A A LR VH + + GF S + +L+D Y
Sbjct: 591 TFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYA 650
Query: 242 KCKFVSRAWDLFV----KMLFPWNN 262
KC + + F+ K + WN
Sbjct: 651 KCGMIESSEKCFIEISNKYIVSWNT 675
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLRTSL-----FFDPCADYH----VRLVFSQISNPTIYTCN 94
L+ L +C R L Q+H ++ + L + + + R++F + +P + N
Sbjct: 9 LLMLRECKNFRCLLQVHGSLIVSGLKPHNQLINAYSLFQRQDLSRVIFDSVRDPGVVLWN 68
Query: 95 SIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++RGYT LH EA F+ M + G+ PD++ F K+CA D ++H +
Sbjct: 69 SMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAE 128
Query: 151 FGLASDSFLHNTLINMY-------SSCWCLDQ---------------------PDEAIKI 182
GL SD ++ L+ MY S+ D+ A+ +
Sbjct: 129 MGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLL 188
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242
F+ M V + V+L N++ A ++ + +H V + GF + L+D YC
Sbjct: 189 FHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFI--FAFSSGLIDMYCN 246
Query: 243 CKFVSRAWDLF 253
C + A +F
Sbjct: 247 CADLYAAESVF 257
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
D+ +H A++ GL D + +L++MYS C L+
Sbjct: 314 GDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMI 373
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
Q DEAI +F M ++KPNAVTL +VL A R K +H ++
Sbjct: 374 ASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIE 433
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
S +E T ++ Y KC S A F ++
Sbjct: 434 SELETATAVISMYAKCGRFSPALKAFERL 462
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 39/235 (16%)
Query: 66 TSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122
TSL + C + + +F I + + + ++++ Y H EA + +M+ +
Sbjct: 339 TSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIK 398
Query: 123 PDRFMFPSLFKSCADIYVE---KQLHSQAIKFGLASDSFLHNTLINMYSSCW-------- 171
P+ S+ + CA + K +H AIK + S+ +I+MY+ C
Sbjct: 399 PNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKA 458
Query: 172 --------------------CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
+ ++A ++ M++ V P++ T+V +L A D
Sbjct: 459 FERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDY 518
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF-----PWN 261
V+ + + GF S + L++ + KC ++ A LF K F WN
Sbjct: 519 ARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWN 573
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 178 EAIKIF-YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+ F Y E + + P+ + L A A + D + R+H + E G S V + T L
Sbjct: 82 EALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTAL 141
Query: 237 MDAYCKCKFVSRAWDLFVKM----LFPWNN 262
++ YCK + + A +F KM + WN
Sbjct: 142 VEMYCKARDLVSARQVFDKMHVKDVVTWNT 171
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 37/237 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R VF ++ + T N++V G A L +H+M + D +L + + +
Sbjct: 155 RQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214
Query: 139 Y---VEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------------WCLDQP------ 176
V + LH IK G + LI+MY +C W D+
Sbjct: 215 EKSDVCRCLHGLVIKKGFIFA--FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMM 272
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+E +++F M +V+ N V + L A A DL +H + G
Sbjct: 273 AAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLI 332
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
V + T+LM Y KC + A LF+ + + W SA + G+H A
Sbjct: 333 GDVSVATSLMSMYSKCGELEIAEQLFINI--EDRDVVSW--SAMIASYEQAGQHDEA 385
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 69 FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+F+ R +F ++ + + +++ GY + N + A+ +HEM+ QG P+ F
Sbjct: 55 YFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTL 114
Query: 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------- 170
S+ KSC ++ V +H +K G+ ++ N ++NMY++C
Sbjct: 115 SSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIK 174
Query: 171 ------WC--------LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
W L +K++ +M +EN + + + A A + T K+
Sbjct: 175 VKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQ 234
Query: 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
+H V + GF S++ + +++D YC+C ++S A F +M L WN
Sbjct: 235 IHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWN 283
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI- 138
L+F I T +++ G+T+ Y +M+++ + ++ A I
Sbjct: 168 LIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASID 227
Query: 139 --YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP-------------------- 176
KQ+H+ IK G S+ + N+++++Y C L +
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
EA+ +F R E + PN T +++ A A L +++H + GF +
Sbjct: 288 ELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKN 347
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276
VEL L+D Y KC + + +F +++ N +M G G
Sbjct: 348 VELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHG 394
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 100/250 (40%), Gaps = 51/250 (20%)
Query: 57 KQIHAQMLRTSL-----FFDPCADYHVRL--------VFSQISNPTIYTCNSIVRGYTNK 103
KQIHA +++ + D + R F ++ + + T N+++
Sbjct: 233 KQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERS 292
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160
+ EA L + QG +P+ + F SL +CA+I +QLH + + G + L
Sbjct: 293 D-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELA 351
Query: 161 NTLINMYSSCWCLDQPD-------------------------------EAIKIFYRMEIE 189
N LI+MY+ C + PD EA+++F +M
Sbjct: 352 NALIDMYAKCGNI--PDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSS 409
Query: 190 NVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248
++P+ + + VL+A R + +K + E G ++ ++D + +
Sbjct: 410 GIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGE 469
Query: 249 AWDLFVKMLF 258
A++L +M F
Sbjct: 470 AYELVERMPF 479
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 115/270 (42%), Gaps = 54/270 (20%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFDPC-----ADYHVRL--------VFSQISNPTI 90
L CS + L KQIHA +LR L D D +V+ +F+ + N I
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ +++ GY LH EA + M GL PD + S+ SCA ++ Q+H+
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------------------ 177
IK L +DS++ N+LI+MY+ C CL
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWEL 435
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236
EA+ IF M ++P+ +T V++L A A L K++H + + G + + L
Sbjct: 436 HEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSAL 495
Query: 237 MDAYCKCKFVSRAWDLF----VKMLFPWNN 262
+D Y C + + +F VK L WN+
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMKVKDLVIWNS 525
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 50/251 (19%)
Query: 43 CLVSLEKCSTMRELK---QIHAQMLRTSLFFDPCADYHV-------------RLVFSQIS 86
C L C+++ L Q+HA ++ +L D + R VF +
Sbjct: 353 CSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFA 412
Query: 87 NPTIYTCNSIVRGYTNKNLH---HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---V 140
+ N+++ GY+ HEA + +M + + P F SL ++ A + +
Sbjct: 413 AADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGL 472
Query: 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL--------------------------- 173
KQ+H K+GL D F + LI++YS+C+CL
Sbjct: 473 SKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQ 532
Query: 174 -DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
+ +EA+ +F +++ +P+ T N++TA ++ + H + + G + +
Sbjct: 533 QSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYI 592
Query: 233 KTTLMDAYCKC 243
L+D Y KC
Sbjct: 593 TNALLDMYAKC 603
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 44/192 (22%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
KQIH M + L D A + RLVF ++ + NS+ GY +
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQ 533
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLH 160
+ + EA + E+ + PD F F ++ + A + + ++ H Q +K GL + ++
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT 593
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N L++MY+ C + + +A+++ +M E ++
Sbjct: 594 NALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIE 653
Query: 193 PNAVTLVNVLTA 204
PN +T V VL+A
Sbjct: 654 PNYITFVGVLSA 665
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 36/224 (16%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSC 135
+ R VF ++ + + +++V + ++ E+ + + E + P+ ++ S ++C
Sbjct: 97 YARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQAC 156
Query: 136 ADI-----YVEKQLHSQAIKFGLASDSFLHNTLINMY----------------------- 167
+ + ++ QL S +K G D ++ LI+ Y
Sbjct: 157 SGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVT 216
Query: 168 -----SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
S C + + ++++FY++ +NV P+ L VL+A + L K++H +
Sbjct: 217 WTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266
G L L+D+Y KC V A LF M P N W
Sbjct: 277 RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGM--PNKNIISW 318
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
++ + +H Q I +GL D++L N LIN+YS + A K+F +M N+
Sbjct: 60 LHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVY---ARKVFEKMPERNL 110
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 69/260 (26%)
Query: 29 INNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CAD---- 75
++N +N+ H L L+ CS+ +LK IH +LRT L D C D
Sbjct: 1 MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTF 60
Query: 76 -------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
+ +FSQI NP ++ N ++R ++ +AF FY +M+ + PD F
Sbjct: 61 NKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITF 120
Query: 129 PSLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185
P L K+ ++ + V +Q HSQ ++FG +D ++ N+L++MY++C + A +IF +
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAA---AGRIFGQ 177
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M +V W T+++ YCKC
Sbjct: 178 MGFRDVVS---------------------------------W------TSMVAGYCKCGM 198
Query: 246 VSRAWDLFVKM----LFPWN 261
V A ++F +M LF W+
Sbjct: 199 VENAREMFDEMPHRNLFTWS 218
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+ R +F ++ + ++T + ++ GY N +A + M +G++ + + S+ SCA
Sbjct: 201 NAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCA 260
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183
+ ++ + +K + + L L++M+ W ++AI +F
Sbjct: 261 HLGALEFGERAYEYVVKSHMTVNLILGTALVDMF---WRCGDIEKAIHVF 307
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 121/283 (42%), Gaps = 56/283 (19%)
Query: 32 NNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--------------PCADYH 77
N I + H + LE+CS+++EL+QI + + L+ + D
Sbjct: 29 NYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEA 88
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137
R VF I + +++++G+ + +A F+ M + P + F L K C D
Sbjct: 89 AR-VFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD 147
Query: 138 ---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-------- 186
+ V K++H +K G + D F L NMY+ C Q +EA K+F RM
Sbjct: 148 EAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC---RQVNEARKVFDRMPERDLVSW 204
Query: 187 -----------------EI------ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
E+ EN+KP+ +T+V+VL A + R + K +H
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML----FPWNN 262
SGF S V + T L+D Y KC + A LF ML WN+
Sbjct: 265 SGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 307
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 51/266 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L+ C EL K+IH ++++ D C + R VF ++ +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQLHSQ 147
+ N+IV GY+ + A M + L P S+ + + I V K++H
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLD----------------------------QPDEA 179
A++ G S + L++MY+ C L+ P EA
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ IF +M E VKP V+++ L A A DL + +HK E G +V + +L+
Sbjct: 322 MLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381
Query: 240 YCKCKFVSRAWDLFVKM----LFPWN 261
YCKCK V A +F K+ L WN
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWN 407
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 48/253 (18%)
Query: 57 KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNK 103
K+IH +R+ + C R +F + + + NS++ Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY-VEKQ--LHSQAIKFGLASDSFLH 160
EA L + +M+ +G+ P +CAD+ +E+ +H +++ GL + +
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375
Query: 161 NTLINMYSSCWCLD----------------------------QPDEAIKIFYRMEIENVK 192
N+LI+MY C +D +P +A+ F +M VK
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435
Query: 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
P+ T V+V+TA A K +H V S +V + T L+D Y KC + A +
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLI 495
Query: 253 FVKM----LFPWN 261
F M + WN
Sbjct: 496 FDMMSERHVTTWN 508
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI----YTCNSIVRGYTNKN 104
KC + E ++IH++ FF ++ N + + NSI+ GY K
Sbjct: 529 KCGMIEEAEKIHSR------FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKE 582
Query: 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFLHN 161
+A + + M+ G+ PD+F + ++ +CA++ + KQ+H+Q IK L SD ++ +
Sbjct: 583 QSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 642
Query: 162 TLINMYSSCWCL----------------------------DQPDEAIKIFYRMEIENVKP 193
TL++MYS C L + +EAI++F RM +EN+KP
Sbjct: 643 TLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKP 702
Query: 194 NAVTLVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252
N VT +++L A A + + ++ + + G + + ++D K V RA +L
Sbjct: 703 NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALEL 762
Query: 253 FVKMLFPWNN 262
+M F ++
Sbjct: 763 IREMPFEADD 772
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 56/254 (22%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDPCADYHVR-----------------LVFSQIS 86
L C+ + EL+ Q+HA L++ D AD VR ++F
Sbjct: 288 LRSCAALSELRLGGQLHAHALKS----DFAADGIVRTATLDMYAKCDNMQDAQILFDNSE 343
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
N + N+++ GY+ + +A L +H ++ GL D +F++CA + Q
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------------- 176
++ AIK L+ D + N I+MY C L +
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463
Query: 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
E + +F M ++P+ T ++L A L +H + +SG S+ + +
Sbjct: 464 GYETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCS 522
Query: 236 LMDAYCKCKFVSRA 249
L+D Y KC + A
Sbjct: 523 LIDMYSKCGMIEEA 536
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 67/276 (24%)
Query: 53 MRELKQIHAQMLRTSLFFDPC-ADYHVRL------------VFSQISNPTIYTCNSIVRG 99
+ E QI+ +++SL D C A+ + + VF ++ + N+I+
Sbjct: 398 LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAA 457
Query: 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--ADIYVEKQLHSQAIKFGLASDS 157
+ +E + M+ + PD F F S+ K+C + ++HS +K G+AS+S
Sbjct: 458 HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNS 517
Query: 158 FLHNTLINMYSSCWCL-------------------------------------------- 173
+ +LI+MYS C +
Sbjct: 518 SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISG 577
Query: 174 ----DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
+Q ++A +F RM + P+ T VL A K++H V + S
Sbjct: 578 YVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSD 637
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKML----FPWN 261
V + +TL+D Y KC + + +F K L WN
Sbjct: 638 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWN 673
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 102/279 (36%), Gaps = 41/279 (14%)
Query: 1 MAAPLPLHHQTR---------TPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCS 51
MA L L H TR T +S P + N +NS +F V ++C+
Sbjct: 1 MAESLRLLHMTRSVVSFNRCLTEKISYRRVPSFSYFTDFLNQVNSVSTTNFSFV-FKECA 59
Query: 52 TMREL---KQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHE 108
L KQ HA M+ + PT + N +++ YTN
Sbjct: 60 KQGALELGKQAHAHMIISGF------------------RPTTFVLNCLLQVYTNSRDFVS 101
Query: 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
A + + +M ++ ++ M KS + ++ ++ +S L L N
Sbjct: 102 ASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQN--- 158
Query: 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+ ++I++F M E ++ + T +L + D ++H V G +
Sbjct: 159 -----GESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDT 213
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
V + L+D Y K K + +F + P N W+
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGI--PEKNSVSWS 250
>sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730
OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
Length = 653
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 51/271 (18%)
Query: 43 CLVSLEKCSTMREL---KQIHAQMLRTSLFFDP-------------CADYHVRLVFSQIS 86
C+ +L++C+ ++ +QIH M+R D C ++ S
Sbjct: 63 CIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGGS 122
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVE--KQL 144
++ N+++ G+ +A Y EM G++PD++ FPSL K + + K++
Sbjct: 123 ERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELSDVKKV 182
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD------------------- 177
H A K G SD ++ + L+ YS ++ PD
Sbjct: 183 HGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFR 242
Query: 178 --EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
+A+ +F +M E V + T+ +VL+A + D+ + +H ++G S + +
Sbjct: 243 FEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNA 302
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
L+D Y K K++ A +F M LF WN+
Sbjct: 303 LIDMYGKSKWLEEANSIFEAMDERDLFTWNS 333
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 39/207 (18%)
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIYVEKQLHSQAIK 150
N++V GY+ +A L + +M +G+ R S+ F DI + +H A+K
Sbjct: 231 NALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVK 290
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEAIKI 182
G SD + N LI+MY L++ D + +
Sbjct: 291 TGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLAL 350
Query: 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW----SHVELKTTLMD 238
F RM ++P+ VTL VL R LR + +H + SG S+ + +LMD
Sbjct: 351 FERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMD 410
Query: 239 AYCKCKFVSRAWDLF----VKMLFPWN 261
Y KC + A +F VK WN
Sbjct: 411 MYVKCGDLRDARMVFDSMRVKDSASWN 437
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F + ++T NS++ + H + M+ G+ PD ++ +C A
Sbjct: 319 IFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLAS 378
Query: 138 IYVEKQLHSQAIKFGL----ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN 190
+ +++H I GL +S+ F+HN+L++MY C L +A +F M +++
Sbjct: 379 LRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDL---RDARMVFDSMRVKD 432
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 44/248 (17%)
Query: 56 LKQIHAQMLRT--------SLFFDP---CADY-HVRLVFSQISNPTIYTCNSIVRGYTNK 103
+K I A ML++ S D C D + R VF +S I T NS++
Sbjct: 84 IKTIQAHMLKSGFPAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKH 143
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQL---HSQAIKFGL-ASDSFL 159
EA Y MI ++PD + S+FK+ +D+ +EK+ H A+ GL S+ F+
Sbjct: 144 RRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFV 203
Query: 160 HNTLINMY-------SSCWCLDQPDE---------------------AIKIFYRMEIENV 191
+ L++MY + LD+ +E A+K F M +E V
Sbjct: 204 GSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKV 263
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
+PN T +VL + +D+ K +H + +SGF S + +T+L+ Y +C V +
Sbjct: 264 QPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLR 323
Query: 252 LFVKMLFP 259
+F + +P
Sbjct: 324 VFKCIEYP 331
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+LV ++ + +++ GY+ K EA + M+V+ + P+ + + S+ SC
Sbjct: 219 EAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCG 278
Query: 137 ---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPDE----- 178
DI K +H +K G S +L+ MY C C++ P++
Sbjct: 279 NLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTS 338
Query: 179 -------------AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
A+ F +M +++KPN+ TL + L + +++H V + G
Sbjct: 339 LISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYG 398
Query: 226 FWSHVELKTTLMDAYCKC 243
F + L+D Y KC
Sbjct: 399 FDRDKYAGSGLIDLYGKC 416
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF I P + S++ G A + + +M+ + P+ F S + C+++ +
Sbjct: 324 VFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAM 383
Query: 141 ---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+Q+H K+G D + + LI++Y C C D
Sbjct: 384 FEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYS 443
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F RM ++PN VT+++VL A
Sbjct: 444 YAQNGFGREALDLFERMINLGLQPNDVTVLSVLLA 478
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 32/229 (13%)
Query: 47 LEKCSTMRELKQIHAQMLRTSL---------FFDPC-----ADYHVRLVFSQISNPTIYT 92
L++ + E K+I+A ++ L D C DY RL F+Q+SNP ++
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRL-FNQVSNPNVFL 75
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQA 148
NSI+R YT+ +L+ + Y +++ + +PDRF FP +FKSCA + Y+ KQ+H
Sbjct: 76 YNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
KFG N LI+MY D +A K+F M +V ++ ++L+ AR
Sbjct: 136 CKFGPRFHVVTENALIDMYMK---FDDLVDAHKVFDEMYERDV----ISWNSLLSGYARL 188
Query: 209 RDLRTVKRV-HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
++ K + H +D++ + T ++ Y A D F +M
Sbjct: 189 GQMKKAKGLFHLMLDKT-----IVSWTAMISGYTGIGCYVEAMDFFREM 232
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F + + TI + +++ GYT + EA F+ EM + G+ PD S+ SCA
Sbjct: 197 LFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGS 256
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE------------------- 178
+ + K +H A + G + + N LI MYS C + Q +
Sbjct: 257 LELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISG 316
Query: 179 ---------AIKIFYRMEIENVKPNAVTLVNVLTA 204
AI+ F M+ VKPN +T + +L+A
Sbjct: 317 YAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221
+I+ Y+ C EA+ F M++ ++P+ ++L++VL + A+ L K +H
Sbjct: 211 AMISGYTGIGCYV---EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYA 267
Query: 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ GF + L++ Y KC +S+A LF +M
Sbjct: 268 ERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQM 302
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 78/285 (27%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA--------------DY--HVRLVFSQISNPTI 90
L++CS ELKQIHA+ML+T L D A D+ + ++VF P
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQ 147
+ N ++RG++ + + L Y M+ + + FPSL K+C+++ Q+H+Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 148 AIKFGLASDSFLHNTLINMYSSCWC----------LDQPDE------------------A 179
K G +D + N+LIN Y+ + +PD+ A
Sbjct: 141 ITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIA 200
Query: 180 IKIFYRM-----------------------------EIEN--VKPNAVTLVNVLTARARA 208
+ +F +M E++N V+P+ V+L N L+A A+
Sbjct: 201 LTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQL 260
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L K +H ++++ L L+D Y KC + A ++F
Sbjct: 261 GALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
+F +++ + +++ GY +++ EA +HEM + PD + +CA +
Sbjct: 203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 262
Query: 141 EKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
+Q +HS K + DS L LI+MY+ C +++
Sbjct: 263 LEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISG 322
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTA 204
EAI F M+ +KPN +T VLTA
Sbjct: 323 YAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 47/257 (18%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSLFFDP--CA---DYHVRL--------VFSQISNPTI 90
L+ C + +L+ QIH+Q+++T+ + C+ D + +L + + + +
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQ 147
+ +++ GYT N +A + +M+ +G+ D + +CA + K Q+H+Q
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616
Query: 148 AIKFGLASDSFLHNTLINMYSSCWCLDQP----------------------------DEA 179
A G +SD N L+ +YS C +++ +EA
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+++F RM E + N T + + A + +++ K+VH + ++G+ S E+ L+
Sbjct: 677 LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 736
Query: 240 YCKCKFVSRAWDLFVKM 256
Y KC +S A F+++
Sbjct: 737 YAKCGSISDAEKQFLEV 753
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 44 LVSLEKCSTMRELKQIHAQMLR-------------TSLFFDPCADYHVRLVFSQISNPTI 90
L + +K ++ +Q+H +L+ SL+F +FS +S
Sbjct: 295 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDA 354
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
T N+++ G + +A + M + GL PD SL +C ++ +QLH+
Sbjct: 355 VTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY 414
Query: 148 AIKFGLASDSFLHNTLINMYSSC--------------------W--------CLDQPDEA 179
K G AS++ + L+N+Y+ C W LD +
Sbjct: 415 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+IF +M+IE + PN T ++L R DL +++H + ++ F + + + L+D
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM 534
Query: 240 YCKCKFVSRAWDLFVK 255
Y K + AWD+ ++
Sbjct: 535 YAKLGKLDTAWDILIR 550
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 110/264 (41%), Gaps = 51/264 (19%)
Query: 26 LDNINNNNINSQYQAHFCLVSLEKC----STMRELKQIHAQMLRTSLFFDPCAD------ 75
+D++ N I +Q L LE C ++ E +++H+Q+L+ L + C
Sbjct: 72 IDSVENRGIRPNHQTLKWL--LEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF 129
Query: 76 -------YHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128
Y VF ++ TI+T N +++ ++NL E F + M+ + + P+ F
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189
Query: 129 PSLFKSCADIYVE----KQLHSQAIKFGLASDSFLHNTLINMYS---------------- 168
+ ++C V +Q+H++ + GL + + N LI++YS
Sbjct: 190 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 249
Query: 169 ----SCWCL--------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216
S W + EAI++F M + + P +VL+A + L ++
Sbjct: 250 LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 309
Query: 217 VHKCVDESGFWSHVELKTTLMDAY 240
+H V + GF S + L+ Y
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLY 333
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 44/197 (22%)
Query: 52 TMRELKQIHAQMLRTSL------------FFDPCADYHVR-LVFSQISNPTIYTCNSIVR 98
++E +QIHAQ + + C L F Q N++V
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 665
Query: 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQAIKFGLAS 155
G+ + EA + M +G+ + F F S K+ A++ KQ+H+ K G S
Sbjct: 666 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725
Query: 156 DSFLHNTLINMYSSCWCLDQPD----------------------------EAIKIFYRME 187
++ + N LI+MY+ C + + EA+ F +M
Sbjct: 726 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 785
Query: 188 IENVKPNAVTLVNVLTA 204
NV+PN VTLV VL+A
Sbjct: 786 HSNVRPNHVTLVGVLSA 802
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 33/168 (19%)
Query: 119 QGLIPD----RFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLIN-------MY 167
+G+ P+ +++ K+ + ++LHSQ +K GL S+ L L + +Y
Sbjct: 78 RGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLY 137
Query: 168 SSCWCLDQ-PD--------------------EAIKIFYRMEIENVKPNAVTLVNVLTA-R 205
+ D+ P+ E +F RM ENV PN T VL A R
Sbjct: 138 GAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 197
Query: 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ V+++H + G + L+D Y + FV A +F
Sbjct: 198 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 245
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 85/198 (42%), Gaps = 27/198 (13%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRT-------------SLFF 70
+N + I+NNN + + + + + M++ KQ+HA + +T S++
Sbjct: 683 MNREGIDNNN----FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYA 738
Query: 71 DPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
+ F ++S + N+I+ Y+ EA + +MI + P+
Sbjct: 739 KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 798
Query: 131 LFKSCADI-YVEKQL---HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186
+ +C+ I V+K + S ++GL+ + +++M + L + E I+ M
Sbjct: 799 VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ---EM 855
Query: 187 EIENVKPNAVTLVNVLTA 204
I KP+A+ +L+A
Sbjct: 856 PI---KPDALVWRTLLSA 870
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 71/295 (24%)
Query: 44 LVSLEKCSTMR-ELKQIHAQMLRTSLFFDPCADYHV--RL--------------VFSQIS 86
L+SL ST + L+QIHA +LRTSL + +H RL VFSQ
Sbjct: 14 LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73
Query: 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYVEK 142
NPT+ CN+++R ++ E F + + +P + S C D+
Sbjct: 74 NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133
Query: 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM---------------- 186
Q+H + G SDS L TL+++YS+C + +A K+F +
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTC---ENSTDACKVFDEIPKRDTVSWNVLFSCYL 190
Query: 187 -------------EIEN-----VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
+++N VKP+ VT + L A A L K+VH +DE+G
Sbjct: 191 RNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSG 250
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPW---------NNYGQWAMSA 270
+ L TL+ Y +C + +A+ +F M + W N +G+ A+ A
Sbjct: 251 ALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEA 305
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 34/237 (14%)
Query: 48 EKCSTMRELKQIHAQMLRTSLFFD----------------PCADYHVRLVFSQISNPTIY 91
E+ ++ E++Q HA ML+T LF D P + + ++I +P +
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
T NS++R Y N + A + EM++ + PD++ F + K+CA +Q+H
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208
IK GL +D F+ NTL+N+Y + A K+ RM + +AV+ ++L+A
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEI---ARKVLDRMPVR----DAVSWNSLLSAYLEK 219
Query: 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWN 261
+ + + ++E +VE ++ Y V A ++F V+ + WN
Sbjct: 220 GLVDEARALFDEMEE----RNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWN 272
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 26/271 (9%)
Query: 1 MAAPLPLHHQTRTPALSSDNSPLINLDNINNNNIN----SQYQAHFCLVSLEKCSTMREL 56
+ +P H + A ++ ++P + L + +Y F L + E
Sbjct: 100 IGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEG 159
Query: 57 KQIHAQMLRTSLFFD-----PCADYHVRLVFSQISNPTI--------YTCNSIVRGYTNK 103
+QIH +++ L D + + R + +I+ + + NS++ Y K
Sbjct: 160 RQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEK 219
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163
L EA + EM + + FM + ++ S ++ D N +
Sbjct: 220 GLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVR-----DVVSWNAM 274
Query: 164 INMYSSCWCLDQPDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
+ Y+ C + E +++F +M + KP+ TLV+VL+A A L + VH +D
Sbjct: 275 VTAYAHVGCYN---EVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYID 331
Query: 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
+ G L T L+D Y KC + +A ++F
Sbjct: 332 KHGIEIEGFLATALVDMYSKCGKIDKALEVF 362
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 32/160 (20%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSC 135
+ VF + + + N++V Y + ++E +++M+ PD F S+ +C
Sbjct: 255 EAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314
Query: 136 ADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE-------------- 178
A + Q +H K G+ + FL L++MYS C +D+ E
Sbjct: 315 ASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWN 374
Query: 179 --------------AIKIFYRMEIENVKPNAVTLVNVLTA 204
A++IF M E KPN +T + VL+A
Sbjct: 375 SIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSA 414
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 123/305 (40%), Gaps = 82/305 (26%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSL---------FFDPCA--------DYHVRLVFS 83
H L L C T++ L+ IHAQM++ L + C Y + VF
Sbjct: 34 HPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAIS-VFK 92
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK- 142
I P + N++ RG+ + A Y MI GL+P+ + FP + KSCA K
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE 152
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------------ 176
Q+H +K G D ++H +LI+MY L+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 177 ----DEAIKIFYRMEIENV-------------------------------KPNAVTLVNV 201
+ A K+F + +++V +P+ T+V V
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 202 LTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261
++A A++ + ++VH +D+ GF S++++ L+D Y KC + A LF ++ P+
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL--PYK 330
Query: 262 NYGQW 266
+ W
Sbjct: 331 DVISW 335
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 37/218 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
+F +I + + N+++ GY + EA + +M+ + PD ++ +CA
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------------- 176
I + +Q+H G S+ + N LI++YS C L+
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341
Query: 177 -------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE--SGFW 227
EA+ +F M PN VT++++L A A + + +H +D+ G
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFV----KMLFPWN 261
+ L+T+L+D Y KC + A +F K L WN
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 45/163 (27%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---- 136
+F ++ + + N+++ GYT+ NL+ EA L + EM+ G P+ S+ +CA
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 137 -------DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------- 174
+Y++K+L G+ + S L +LI+MY+ C ++
Sbjct: 383 IDIGRWIHVYIDKRLK------GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436
Query: 175 -------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
+ D + +F RM ++P+ +T V +L+A
Sbjct: 437 SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 54 RELKQI-HAQMLRTSLF--FDPCADYHV-RLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
+ LK + +A LRTSL + C D VF+ I + ++ + N+++ G+ +
Sbjct: 395 KRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAS 454
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCA 136
F + M G+ PD F L +C+
Sbjct: 455 FDLFSRMRKIGIQPDDITFVGLLSACS 481
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 112/283 (39%), Gaps = 80/283 (28%)
Query: 51 STMRELKQIHAQMLRTSL---------FFDPCADY-HVRLVFSQISN---PTIYTCNSIV 97
+ ++ LKQ H M+ T L F + C++ H+R +S ++ P Y N+++
Sbjct: 26 NNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMI 85
Query: 98 RGYT---NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK---SCADIYVEKQLHSQAIKF 151
R + N H A Y ++ PD F FP + K +D++ +Q+H Q + F
Sbjct: 86 RALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVF 145
Query: 152 GLASDSFLHNTLINMYSS------------------------------------------ 169
G S + LI MY S
Sbjct: 146 GFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLL 205
Query: 170 ----CWCLDQ---------------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210
CW ++ EAI++F RM +ENV+P+ VTL+ VL+A A
Sbjct: 206 EMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGS 265
Query: 211 LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253
L +R+ VD G V L ++D Y K +++A D+F
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVF 308
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 116 MIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175
MI+ GL D ++C++ + +S +++LHNT+I S LD+
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYS-VFTHQPCPNTYLHNTMIRALS---LLDE 93
Query: 176 PDE---AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
P+ AI ++ ++ KP+ T VL R D+ +++H V GF S V +
Sbjct: 94 PNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHV 153
Query: 233 KTTLMDAYCKCKFVSRAWDLFVKMLFP----WN----NYGQ 265
T L+ Y C + A +F +ML WN YG+
Sbjct: 154 VTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGK 194
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 33/151 (21%)
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVE 141
+ N +TC ++ GY EA + M+++ + PD ++ +CAD + +
Sbjct: 212 VRNEVSWTC--VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG 269
Query: 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCW----------CLDQPD-------------- 177
+++ S G+ L+N +I+MY+ C+++ +
Sbjct: 270 ERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATH 329
Query: 178 ----EAIKIFYRMEIENVKPNAVTLVNVLTA 204
EA+ +F RM V+PN VT + +L+A
Sbjct: 330 GHGAEALAMFNRMVKAGVRPNDVTFIAILSA 360
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY 139
LV I +PTIY+ +S++ T L ++ + M GLIPD + P+LFK CA++
Sbjct: 71 LVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELS 130
Query: 140 ---VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
V KQ+H + GL D+F+ ++ +MY C + +A K+F RM ++V V
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRC---GRMGDARKVFDRMSDKDV----V 183
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T +L A AR L V R+ ++ SG +++ ++ + + + A +F K+
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 32/212 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
L Q + + SI+ G EA + EM V G+ P+ PS+ +C +I
Sbjct: 342 ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNI 401
Query: 139 YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ H A++ L + + + LI+MY+ C ++
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV-DESGF 226
+ E + IF + +KP+ ++ ++L+A + + K + +E G
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGI 521
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258
+E + +++ + + A+DL +M F
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF 553
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 73 CADYHVRLVFSQISN---PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP 129
C + VR++ S+ I + N I+ G+ H EA + + ++ G PD+
Sbjct: 197 CLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVS 256
Query: 130 SLFKSCAD---IYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168
S+ S D + + + +H IK GL D + + +I+MY
Sbjct: 257 SVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EA+++F M++ VKPN VT+ ++L A L + H +V + + L+
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALI 430
Query: 238 DAYCKCKFVSRAWDLF----VKMLFPWNN 262
D Y KC ++ + +F K L WN+
Sbjct: 431 DMYAKCGRINLSQIVFNMMPTKNLVCWNS 459
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 47/254 (18%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSLFFD------------PCADYH-VRLVFSQISNPTI 90
L C + +L K++H ++R D C D RL+F ++ I
Sbjct: 203 LRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDI 262
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYVEKQLHSQ 147
+ N+++ GY + HE + M + PD S+ +C D + + +H+
Sbjct: 263 ISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322
Query: 148 AIKFGLASDSFLHNTLINMY--SSCWCLDQ--------------------------PDEA 179
I G A D + N+L MY + W + PD+A
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
I + M+ ++VKP+ +T+ VL+A A DL T +HK ++ S+V + L++
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 240 YCKCKFVSRAWDLF 253
Y KCK + +A D+F
Sbjct: 443 YSKCKCIDKALDIF 456
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCA--- 136
VF ++S +++ N +V GY + EA YH M+ V G+ PD + FP + ++C
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD------------------- 177
D+ K++H +++G D + N LI MY C +
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228
E +++F+ M +V P+ +TL +V++A D R + +H V +GF
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + +L Y A LF +M
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRM 358
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 39/232 (16%)
Query: 66 TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125
T ++ + + +FS++ I + +++ GY L +A Y M + PD
Sbjct: 339 TQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDE 398
Query: 126 FMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182
++ +CA D+ +LH AIK L S + N LINMYS C C+D+ A+ I
Sbjct: 399 ITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDK---ALDI 455
Query: 183 FYRMEIENV------------------------------KPNAVTLVNVLTARARARDLR 212
F+ + +NV +PNA+TL L A AR L
Sbjct: 456 FHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALM 515
Query: 213 TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF---VKMLFPWN 261
K +H V +G L L+D Y +C ++ AW F K + WN
Sbjct: 516 CGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWN 567
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 177 DEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
DEA+ +++RM + VKP+ T VL DL K VH V G+ +++
Sbjct: 177 DEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNA 236
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPWN 261
L+ Y KC V A LF +M + WN
Sbjct: 237 LITMYVKCGDVKSARLLFDRMPRRDIISWN 266
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 116/276 (42%), Gaps = 52/276 (18%)
Query: 52 TMRELKQIHAQM---------------LRTSLFFDPCADYHVRLVFSQISNPTIYTCNSI 96
T+ LKQIH + L+ +LFF + L+FS P I+ NS+
Sbjct: 25 TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTK--YSYLLFSHTQFPNIFLYNSL 82
Query: 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAIKFGL 153
+ G+ N +L HE + + GL F FP + K+C K LHS +K G
Sbjct: 83 INGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGF 142
Query: 154 ASDSFLHNTLINMYSSCWCLDQ--------PD--------------------EAIKIFYR 185
D +L+++YS L+ PD EAI +F +
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
M VKP++ +V VL+A DL + + + K ++E + ++TTL++ Y KC
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 246 VSRAWDLFVKM----LFPWNNYGQWAMSATVGPQGL 277
+ +A +F M + W+ Q S + +G+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F +I + ++ T ++ GYT H EA + +M+ G+ PD + + +C D
Sbjct: 168 LFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGD 227
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ---------------------- 175
+ + + + + +SF+ TL+N+Y+ C +++
Sbjct: 228 LDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQG 287
Query: 176 ------PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229
P E I++F +M EN+KP+ ++V L++ A L + +D F ++
Sbjct: 288 YASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTN 347
Query: 230 VELKTTLMDAYCKCKFVSRAWDLFVKM 256
+ + L+D Y KC ++R +++F +M
Sbjct: 348 LFMANALIDMYAKCGAMARGFEVFKEM 374
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 53 MRELKQIHAQMLRTSL--FFDPCADYH-VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEA 109
M E++ +RT+L + C R VF + I T +++++GY + + E
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEG 297
Query: 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI----KFGLASDSFLHNTLIN 165
+ +M+ + L PD+F SCA + L I + ++ F+ N LI+
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLGA-LDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 166 MYSSCWCLDQPDEAIK 181
MY+ C + + E K
Sbjct: 357 MYAKCGAMARGFEVFK 372
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CA-------DYHVRLVFSQ 84
H CL L C +R L QIH ++ + D CA Y RL+
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC- 64
Query: 85 ISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYVEK- 142
P + N++VRGY+ + H + + EM+ +G + PD F F + K+ + +
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 143 --QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN 200
Q+H QA+K GL S F+ TLI MY C C++ A K+F M +PN V
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEF---ARKVFDEMH----QPNLVAWNA 177
Query: 201 VLTARARARDLRTVKRV 217
V+TA R D+ + +
Sbjct: 178 VITACFRGNDVAGAREI 194
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 41/170 (24%)
Query: 130 SLFKSCADIYVEKQLHSQAIKFGLASDS-------------------------------- 157
SL SC ++ Q+H IK+G+ +DS
Sbjct: 10 SLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPD 69
Query: 158 -FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVK 215
F+ NTL+ YS D+P ++ +F M + V P++ + V+ A R LRT
Sbjct: 70 AFMFNTLVRGYSES---DEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126
Query: 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN 261
++H + G SH+ + TTL+ Y C V A +F +M L WN
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWN 176
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 45/221 (20%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC-- 135
+ +FS++ + + ++++ G + +E+FL++ E+ G+ P+ + +C
Sbjct: 222 AKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQ 281
Query: 136 -ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW----------------CL----- 173
K LH K G + ++N LI+MYS C C+
Sbjct: 282 SGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTS 341
Query: 174 --------DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR-------TVKRVH 218
Q +EA+++F M V P+ ++ +++L A + A + +KRV+
Sbjct: 342 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 401
Query: 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259
E +E ++D Y + + +A+D +M P
Sbjct: 402 HIEPE------IEHYGCMVDLYGRSGKLQKAYDFICQMPIP 436
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 53/268 (19%)
Query: 47 LEKCSTMREL---KQIHAQMLRTS--------------LFFDPCADYHV-RLVFSQISNP 88
L+ C R+L KQIHA++L+ +F+ C + ++FS++
Sbjct: 77 LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVR 136
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLH 145
+++ +I+ L A + + EM+ + PD F+ P++ K+C + + +H
Sbjct: 137 NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVH 196
Query: 146 SQAIKFGLASDSFLHNTLINMYSSCWCLDQ--------PD-------------------- 177
+K GL F+ ++L +MY C LD PD
Sbjct: 197 GYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNE 256
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237
EAI++F M + V+P VT+ L+A A + K+ H +G L T+L+
Sbjct: 257 EAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLL 316
Query: 238 DAYCKCKFVSRAWDLFVKM----LFPWN 261
+ YCK + A +F +M + WN
Sbjct: 317 NFYCKVGLIEYAEMVFDRMFEKDVVTWN 344
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 110/266 (41%), Gaps = 40/266 (15%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY- 139
VF +I + N+++ GY + EA + +M QG+ P R + + A++
Sbjct: 230 VFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGG 289
Query: 140 VE--KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD-------------------- 177
VE KQ H+ AI G+ D+ L +L+N Y ++ +
Sbjct: 290 VEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISG 349
Query: 178 --------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH-KCVDESGFWS 228
+AI + M +E +K + VTL +++A AR +L+ K V C+ S F S
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHS-FES 408
Query: 229 HVELKTTLMDAYCKCKFVSRAWDLF----VKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284
+ L +T+MD Y KC + A +F K L WN A A G G R
Sbjct: 409 DIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTL--LAAYAESGLSGEALRLFYG 466
Query: 285 HQISGPCPKKAH-KLFFFSMLKKVHV 309
Q+ G P L S+L+ V
Sbjct: 467 MQLEGVPPNVITWNLIILSLLRNGQV 492
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 44/241 (18%)
Query: 43 CLVSLEKCSTMRELKQIHA----------QMLRTSLFFDPCA---DYHVRLVFSQISNPT 89
CL + + E KQ HA +L TSL C + +VF ++
Sbjct: 280 CLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKD 339
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHS 146
+ T N I+ GY + L +A M ++ L D +L + A ++ + K++
Sbjct: 340 VVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 399
Query: 147 QAIKFGLASDSFLHNTLINMYSSCWCL----------------------------DQPDE 178
I+ SD L +T+++MY+ C + E
Sbjct: 400 YCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGE 459
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
A+++FY M++E V PN +T ++ + R + K + + SG ++ TT+M+
Sbjct: 460 ALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMN 519
Query: 239 A 239
Sbjct: 520 G 520
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 9/183 (4%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLFKSCA 136
VF + N+++ Y L EA ++ M ++G+ P+ + SL ++
Sbjct: 432 VFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRN-G 490
Query: 137 DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
+ K + Q G+ + T++N C +EAI +M+ ++PNA
Sbjct: 491 QVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGC---SEEAILFLRKMQESGLRPNAF 547
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255
++ L+A A L + +H + + S V ++T+L+D Y KC +++A +F
Sbjct: 548 SITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGS 607
Query: 256 MLF 258
L+
Sbjct: 608 KLY 610
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 71 DPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS 130
D D +++ S I P + + +++ G EA LF +M GL P+ F
Sbjct: 493 DEAKDMFLQMQSSGII-PNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITV 551
Query: 131 LFKSCA---DIYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCWCLDQPD--------- 177
+CA +++ + +H I+ +S + +L++MY+ C +++ +
Sbjct: 552 ALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYS 611
Query: 178 -------------------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211
EAI ++ +E +KP+ +T+ NVL+A A D+
Sbjct: 612 ELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDI 664
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-FWSHVE-LKTT 235
EA+ + M+ N++ +L RDL T K++H + ++G F++ E ++T
Sbjct: 53 EALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETK 112
Query: 236 LMDAYCKCKFVSRAWDLFVKM----LFPW 260
L+ Y KC + A LF K+ +F W
Sbjct: 113 LVIFYAKCDALEIAEVLFSKLRVRNVFSW 141
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI 138
R +FS I P++ N+++ GY+N + EA + +M Q L PD+ + SCA +
Sbjct: 370 RRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARL 429
Query: 139 -YVE--KQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD------- 177
++E KQ+H I+ ++ +S + + LI +YS C C+++ D
Sbjct: 430 RFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSM 489
Query: 178 -----------EAIKIFYRMEIENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
+A+ +F RM V PN + VL++ +R L ++ H V +SG
Sbjct: 490 ISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSG 549
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
+ S ++T L D YCKC + A F +L
Sbjct: 550 YVSDSFVETALTDMYCKCGEIDSARQFFDAVL 581
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 49/234 (20%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---D 137
VF + + + N+++ K +A + Y M+ G +P RF S+ +C+ D
Sbjct: 94 VFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLD 153
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW-----------CLDQPD--------- 177
+ H A+K GL + F+ N L++MY+ C L QP+
Sbjct: 154 GVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 213
Query: 178 ---------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTV---------KRVHK 219
EA+++F M + V+ ++V L N+L+ A ++ K++H
Sbjct: 214 GLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHC 273
Query: 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWN----NYGQ 265
GF + L +L++ Y K K ++ A +F +M + WN +GQ
Sbjct: 274 LALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQ 327
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSL------------FFDPCADYHV-RLVFSQISNP 88
V L C+ +R L KQIH ++RT + + C + +F N
Sbjct: 421 VILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINE 480
Query: 89 TIYTC-NSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCA---DIYVEKQ 143
C NS++ G+ + L +A + + M L P+ F ++ SC+ + +Q
Sbjct: 481 LDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQ 540
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLD----------------------------Q 175
H +K G SDSF+ L +MY C +D +
Sbjct: 541 FHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGR 600
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTA 204
DEA+ ++ +M KP+ +T V+VLTA
Sbjct: 601 GDEAVGLYRKMISSGEKPDGITFVSVLTA 629
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 50/261 (19%)
Query: 52 TMRELKQIHAQMLRTSLFFD------------PCADY-HVRLVFSQIS-NPTIYTCNSIV 97
++R +K +H ++L L D C D+ R VF +Y NS++
Sbjct: 19 SLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLM 78
Query: 98 RGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADI---YVEKQLHSQAIKFGL 153
GY+ ++ H+ + ++ + +PD F FP++ K+ + ++ + +H+ +K G
Sbjct: 79 SGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGY 138
Query: 154 ASDSFLHNTLINMYS--------------------SCW-----CLDQPDEA---IKIFYR 185
D + ++L+ MY+ + W C Q EA +++F R
Sbjct: 139 VCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGR 198
Query: 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245
ME +PN+V+L ++A +R L K +H+ + GF + + L+D Y KC
Sbjct: 199 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDC 258
Query: 246 VSRAWDLFVKM----LFPWNN 262
+ A ++F KM L WN+
Sbjct: 259 LEVAREVFQKMPRKSLVAWNS 279
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 34/230 (14%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
R VF ++ ++ NS+++GY K + MI++G P + S+ +C+
Sbjct: 263 REVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 322
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC---------WCLDQPD--------- 177
++ K +H I+ + +D +++ +LI++Y C + Q D
Sbjct: 323 RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMI 382
Query: 178 ----------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227
+A++++ +M VKP+ VT +VL A ++ L K++H + ES
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 442
Query: 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA-MSATVGPQG 276
+ L + L+D Y KC A+ +F + P + W M + G G
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSI--PKKDVVSWTVMISAYGSHG 490
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 109/263 (41%), Gaps = 57/263 (21%)
Query: 56 LKQIHAQMLRTSLFFDP------------CAD----YHVRLVFSQISNPTIYTCNSIVRG 99
LKQIH +L + +F+ C + R + Q+ +I +S++
Sbjct: 17 LKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGH 76
Query: 100 YT-----NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK--QLHSQAIKFG 152
++ N+ L +FL Y M G+IP R FP L K+ + Q H+ +KFG
Sbjct: 77 FSGGITLNRRL---SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFG 133
Query: 153 LASDSFLHNTLINMYSSCWCLD----------------------------QPDEAIKIFY 184
L SD F+ N+LI+ YSS D EA+ F
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFV 193
Query: 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKC 243
M+ V N +T+V+VL A + D+R + VH E+G V + ++L+D Y KC
Sbjct: 194 EMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253
Query: 244 KFVSRAWDLFVKMLFPWNNYGQW 266
A +F +M P N W
Sbjct: 254 SCYDDAQKVFDEM--PSRNVVTW 274
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 47/245 (19%)
Query: 58 QIHAQMLRTSLFFDPCA--------------DYHVRLVFSQISNPTIYTCNSIVRGYTNK 103
Q HA +++ L DP D+ RL F + + T +++ G+
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRL-FDGAEDKDVVTWTAMIDGFVRN 182
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFG-LASDSFL 159
EA +++ EM G+ + S+ K+ D+ + +H ++ G + D F+
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFI 242
Query: 160 HNTLINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENV 191
++L++MY C C D D+ + +F M +V
Sbjct: 243 GSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV 302
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
PN TL +VL+A A L +RVH + ++ + TTL+D Y KC + A
Sbjct: 303 APNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAIL 362
Query: 252 LFVKM 256
+F ++
Sbjct: 363 VFERL 367
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-- 138
VF ++ + + T +++ GY + L + EM+ + P+ S+ +CA +
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321
Query: 139 -YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
+ +++H IK + ++ TLI++Y C CL +EAI +F R+ +NV
Sbjct: 322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCL---EEAILVFERLHEKNVY-TWTA 377
Query: 198 LVNVLTARARARD 210
++N A ARD
Sbjct: 378 MINGFAAHGYARD 390
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 57 KQIHAQMLRTSLFFDPCA-----DYHVR--------LVFSQISNPTIYTCNSIVRGYTNK 103
+++H M++ S+ + A D +V+ LVF ++ +YT +++ G+
Sbjct: 326 RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAH 385
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
+AF ++ M+ + P+ F ++ +CA
Sbjct: 386 GYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPCA-----------DYHVR------LVFSQISNPT 89
+ C T+R+L QIHA +++ D A D H R +F+Q+
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 90 IYTCNSIVRGYTNKNLHHEAF---LFYHEMIVQGLIPDRFMFPSLFKSCAD---IYVEKQ 143
++ N+I+RG++ + LFY M + + P+RF FPS+ K+CA I KQ
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189
+H A+K+G D F+ + L+ MY C + +A +FY+ IE
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFM---KDARVLFYKNIIE 192
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220
NT+I+ YS +A+++F M+ +++PN VTLV+VL A +R L + +H
Sbjct: 243 NTMISGYSLNGFFK---DAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLY 299
Query: 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267
++SG L + L+D Y KC + +A +F ++ P N W+
Sbjct: 300 AEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL--PRENVITWS 344
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 32/210 (15%)
Query: 79 RLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC--- 135
R++F ++ ++ + N+++ GY+ +A + EM + P+ S+ +
Sbjct: 228 RMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRL 287
Query: 136 ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------- 174
+ + + LH A G+ D L + LI+MYS C ++
Sbjct: 288 GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMI 347
Query: 175 -------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR-VHKCVDESGF 226
Q +AI F +M V+P+ V +N+LTA + + +R + V G
Sbjct: 348 NGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGL 407
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E ++D + + A + + M
Sbjct: 408 EPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 61/273 (22%)
Query: 47 LEKCSTMREL---KQIHAQMLRTSL-------------FFDPCADYHV-RLVFSQISNPT 89
LE C R L + IH +L+ SL + C + + R VF +I +P
Sbjct: 6 LETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPR 65
Query: 90 I--YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQL 144
I + ++R Y + + +A Y++M+ G+ P ++ +P + K+CA + K +
Sbjct: 66 INPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLI 125
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM------------------ 186
HS A+D ++ L++ Y+ C L+ AIK+F M
Sbjct: 126 HSHVNCSDFATDMYVCTALVDFYAKCGELEM---AIKVFDEMPKRDMVAWNAMISGFSLH 182
Query: 187 --------------EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232
I+ + PN T+V + A RA LR K VH GF + + +
Sbjct: 183 CCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVV 242
Query: 233 KTTLMDAYCKCK---FVSRAWDL-FVKMLFPWN 261
KT ++D Y K K + R +DL F K W+
Sbjct: 243 KTGILDVYAKSKCIIYARRVFDLDFKKNEVTWS 275
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIY-------------- 91
+L + +RE K +H R D + V+++ S IY
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAK-SKCIIYARRVFDLDFKKNEV 272
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP--DRFMFPSLFKSCA---DIYVEKQLHS 146
T ++++ GY + EA + +M+V + + CA D+ + +H
Sbjct: 273 TWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHC 332
Query: 147 QAIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQPDE 178
A+K G D + NT+I+ Y + C +P+E
Sbjct: 333 YAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEE 392
Query: 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238
+ ++F+ M ++P+ TL+ VLTA + L H G+ + + LMD
Sbjct: 393 SFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMD 452
Query: 239 AYCKCKFVSRAWDLFVKM----LFPWNN 262
Y KC + A +F M + WN
Sbjct: 453 MYTKCGKLDVAKRVFDTMHKRDIVSWNT 480
>sp|Q9FFN1|PP363_ARATH Pentatricopeptide repeat-containing protein At5g03800
OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1
Length = 896
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 15/217 (6%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM-IVQGLIPDRFMFPSLFKSCADIY 139
+F +I + + N++V + H+AF ++EM V+G D F +L SC D
Sbjct: 240 LFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSS 299
Query: 140 V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196
V ++LH +AI+ GL + ++N LI YS W + + ++ Y M + +AV
Sbjct: 300 VLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKK----VESLYEMMMAQ---DAV 352
Query: 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
T ++TA + + + V E ++ LM +C+ +A LF M
Sbjct: 353 TFTEMITAYMSFGMVDSAVEIFANVTEKNTITY----NALMAGFCRNGHGLKALKLFTDM 408
Query: 257 LFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK 293
L +++++ V GLV + QI G C K
Sbjct: 409 LQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIK 445
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADI 138
LVF +S+PT+ + +++ G++ NL EA + M GL+ P+ + F ++ +C +
Sbjct: 135 LVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRV 194
Query: 139 ---YVEKQLHSQAIKFGLASDSFLHNTLINMY-----SSCWCLDQPDEAIKIF 183
+ Q+H +K G + F+ N+L+++Y SSC D+ +K+F
Sbjct: 195 SRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSC------DDVLKLF 241
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 94 NSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
SI+ GY L +A LF+ + Q L D + C + + Q+H A+
Sbjct: 489 TSIIGGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYAL 548
Query: 150 KFGLASDSFLHNTLINMYS---------------------------SCWCLDQ-PDEAIK 181
K G SD L N+LI+MY+ SC+ L + DEA+
Sbjct: 549 KAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALA 608
Query: 182 IFYRMEIENVKPNAVTLVNVLTA 204
++ RM + +KP+ +TL V++A
Sbjct: 609 LWSRMNEKEIKPDIITLTLVISA 631
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 42/222 (18%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC---AD 137
+F+ ++ T N+++ G+ +A + +M+ +G+ F S +C ++
Sbjct: 373 IFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSE 432
Query: 138 IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC-------WCLDQ--------------- 175
V +Q+H IKFG A + + L++M + C DQ
Sbjct: 433 KKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSII 492
Query: 176 --------PDEAIKIFYRMEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224
PD+A+ +F+R E + ++TL+ + R++ ++H ++
Sbjct: 493 GGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGY--QIHCYALKA 550
Query: 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM----LFPWNN 262
G++S + L +L+ Y KC A +F M + WN+
Sbjct: 551 GYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNS 592
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVH 218
+ LI+ +S L+ EA+K+F+RM V+PN T V +LTA R ++H
Sbjct: 148 YTALISGFSR---LNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGIQIH 204
Query: 219 KCVDESGFWSHVELKTTLMDAYCK 242
+ +SGF + V + +LM Y K
Sbjct: 205 GLIVKSGFLNSVFVSNSLMSLYDK 228
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 47 LEKCSTMRELKQIHAQMLRTSLFFDPC---------------ADYHVRLVFSQISNPTIY 91
+ +CS++R KQI Q++ L D A Y ++ S S + +
Sbjct: 13 ISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVLSSF 72
Query: 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQA 148
+ N+++ Y + Y + G PD F FP +FK+C I KQ+H
Sbjct: 73 SYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132
Query: 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE------------------- 189
K G D ++ N+L++ Y C + A K+F M +
Sbjct: 133 TKMGFYDDIYVQNSLVHFYGVC---GESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYK 189
Query: 190 ---------NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240
+V+PN T V VL + R L K +H + + +E L+D Y
Sbjct: 190 EALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMY 249
Query: 241 CKCKFVSRAWDLFVKM 256
KC+ +S A +F ++
Sbjct: 250 VKCEQLSDAMRVFGEL 265
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 109/262 (41%), Gaps = 52/262 (19%)
Query: 49 KCSTMRELKQIHAQMLRTSL------------FFDPCAD-YHVRLVFSQISNPTIYTCNS 95
K S +RE KQIH + + F+ C + + VF ++ + +
Sbjct: 118 KFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTG 177
Query: 96 IVRGYTNKNLHHEAFLFYHEMIVQ--------------------------GLIPDRFMFP 129
I+ G+T L+ EA + +M V+ GLI R
Sbjct: 178 IITGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLI 237
Query: 130 SLFKSCA--DIYVEKQLHSQAIK-FGL--ASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184
SL A D+YV+ + S A++ FG D N++I+ C ++ EAI +F
Sbjct: 238 SLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHC---ERSKEAIDLFS 294
Query: 185 RMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243
M+ +KP+ L +VL+A A + + VH+ + +G + T ++D Y KC
Sbjct: 295 LMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKC 354
Query: 244 KFVSRAWDLF----VKMLFPWN 261
++ A ++F K +F WN
Sbjct: 355 GYIETALEIFNGIRSKNVFTWN 376
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 49/267 (18%)
Query: 47 LEKCSTMRELK---QIHA----QMLRTSLF--------FDPCADY-HVRLVFSQISNPTI 90
L+ CS + L+ Q+H+ +M++T +F + C + R VF +SN
Sbjct: 291 LKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 350
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI---YVEKQLHSQ 147
T SI+ + + EA + M + LI + S+ ++C + + K+LH+Q
Sbjct: 351 VTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQ 410
Query: 148 AIKFGLASDSFLHNTLINMY----------------------------SSCWCLDQPDEA 179
IK + + ++ +TL+ +Y S C L EA
Sbjct: 411 IIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
Query: 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239
+ M E V+PN T + L A A + L + +H ++ S+V + + L+
Sbjct: 471 LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHM 530
Query: 240 YCKCKFVSRAWDLFVKMLFPWNNYGQW 266
Y KC FVS A+ +F M P N W
Sbjct: 531 YAKCGFVSEAFRVFDSM--PEKNLVSW 555
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 118/285 (41%), Gaps = 62/285 (21%)
Query: 27 DNINNNNINS--QYQAHFCLVS--LEKCSTMRELKQIHAQMLRTSLFFDPCADY------ 76
+N+N ++ +S + + L++ L+ + MR +K+IHA L+ FD Y
Sbjct: 68 ENVNQDDSSSFDSERVDYALLAEWLQSSNGMRLIKRIHAMALKC---FDDQVIYFGNNLI 124
Query: 77 ----------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDR 125
+ R VF + T +++ GY L EAF + + + G+ +
Sbjct: 125 SSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNE 184
Query: 126 FMFPSLFKSC---ADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182
MF L C A+ + +Q+H +K G+ + + ++L+ Y+ C + A++
Sbjct: 185 RMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQC---GELTSALRA 240
Query: 183 FYRMEIENV-------------------------------KPNAVTLVNVLTARARARDL 211
F ME ++V PN T+ ++L A + + L
Sbjct: 241 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKAL 300
Query: 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
R ++VH V + + V + T+LMD Y KC +S +F M
Sbjct: 301 RFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
VF + + + +++ GY EA + M +G D ++F ++ +C DI +
Sbjct: 543 VFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDIEL 602
Query: 141 EKQLHSQA 148
++ + S A
Sbjct: 603 DEAVESSA 610
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 35/230 (15%)
Query: 49 KCSTMRELKQIHAQMLR----------------TSLFFDPCADYHVRLVFSQISNPTIYT 92
+C +M EL +IH ++ ++L DY + + S++S+P Y
Sbjct: 17 QCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFL-SKLSDPPNYG 75
Query: 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEK---QLHSQAI 149
N ++RG++N ++ Y +M+ GL+PD +P L KS + + K LH +
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 135
Query: 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209
K GL D F+ NTLI+MY S DQ A K+F M +N+ VT ++L A A++
Sbjct: 136 KSGLEWDLFICNTLIHMYGS--FRDQA-SARKLFDEMPHKNL----VTWNSILDAYAKSG 188
Query: 210 DLRTVKRVHKCVDESGF--WSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
D+ + + V + E WS +++D Y K ++A ++F +M+
Sbjct: 189 DVVSARLVFDEMSERDVVTWS------SMIDGYVKRGEYNKALEIFDQMM 232
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 46/244 (18%)
Query: 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCA 136
RLVF ++S + T +S++ GY + +++A + +M+ G + S+ +CA
Sbjct: 193 ARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACA 252
Query: 137 DIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP----------------- 176
+ K +H + L L +LI+MY+ C +
Sbjct: 253 HLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMW 312
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
E++++F++M + P+ +T + +L A + ++ K + E
Sbjct: 313 NAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKE 372
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM------------LFPWNNYGQWAMSAT 271
SG E ++D + V A D +M L N+G ++ T
Sbjct: 373 SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAET 432
Query: 272 VGPQ 275
VG +
Sbjct: 433 VGKK 436
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 51/226 (22%)
Query: 45 VSLEKCSTMREL---KQIHAQMLRTSLFFD-----PCADYHVRL--------VFSQISNP 88
V L+ C+++ EL KQIHA + + L + P D++++ F +I P
Sbjct: 290 VVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREP 349
Query: 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSC---ADIYVEKQL 144
+ ++I+ GY + EA + + + I + F + S+F++C AD + Q+
Sbjct: 350 NDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQV 409
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQ----------PD----------------- 177
H+ AIK L + + LI MYS C CLD PD
Sbjct: 410 HADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNA 469
Query: 178 -EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222
EA+++F +M +KPN+VT + VLTA + A V++ C+D
Sbjct: 470 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHA---GLVEQGKHCLD 512
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 52/307 (16%)
Query: 57 KQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTCNSIVRGYTNK 103
+QIHA ++R L + + + + VF Q++ C ++ GYT
Sbjct: 204 RQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQA 263
Query: 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIKFGLASDSFLH 160
+A + +++ +G+ D F+F + K+CA ++ + KQ+H+ K GL S+ +
Sbjct: 264 GRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVG 323
Query: 161 NTLINMYSSC---------------------------WC-LDQPDEAIKIFYRMEIENVK 192
L++ Y C +C + Q +EA+K F + +N
Sbjct: 324 TPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAS 383
Query: 193 P-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
N+ T ++ A + D +VH + ++ L+ Y KC + A +
Sbjct: 384 ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANE 443
Query: 252 LFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG---PCPKKAHKLFFFSMLKKVH 308
+F M +N A +A + G S A ++ C K + + F ++L
Sbjct: 444 VFESM----DNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACS 499
Query: 309 VPGVLIQ 315
G++ Q
Sbjct: 500 HAGLVEQ 506
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS-FLHNT 162
+EAF F EM G+ + + LF++C ++ + LH + ++ G+ + S L N
Sbjct: 65 NEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDR-MRMGIENPSVLLQNC 123
Query: 163 LINMYSSCWCLDQP----------------------------DEAIKIFYRMEIENVKPN 194
++ MY C L+ D+A+ +F M KP
Sbjct: 124 VLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPP 183
Query: 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254
+ +L + R L +++H V +G S+ ++T +++ Y KC ++ A +F
Sbjct: 184 SSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFD 243
Query: 255 KM 256
+M
Sbjct: 244 QM 245
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 32/178 (17%)
Query: 24 INLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFS 83
++ D I + I SQY + KC + + + VF
Sbjct: 409 VHADAIKRSLIGSQYGESALITMYSKCGCLDDANE----------------------VFE 446
Query: 84 QISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQ 143
+ NP I + + G+ EA + +M+ G+ P+ F ++ +C+ + +Q
Sbjct: 447 SMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQ 506
Query: 144 ----LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197
L + K+ +A ++ +I++Y+ L DEA+K M E P+A++
Sbjct: 507 GKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLL---DEALKFMKNMPFE---PDAMS 558
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 52/261 (19%)
Query: 46 SLEKCSTMRE---LKQIHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPT 89
SL+ CS++ QIH +++ L + A + R VF QI P
Sbjct: 276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPD 335
Query: 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-----IYVEKQL 144
+ N I+ G N EA + +M G IPD SL CA + Q+
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTKPMALSQGMQI 393
Query: 145 HSQAIKFGLASDSFLHNTLINMYSSC---------------------W------CL--DQ 175
HS IK+G +D + N+L+ MY+ C W CL +Q
Sbjct: 394 HSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQ 453
Query: 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235
P E +++F M + +P+ +T+ N+L L+ +VH ++G +K
Sbjct: 454 PVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNG 513
Query: 236 LMDAYCKCKFVSRAWDLFVKM 256
L+D Y KC + +A +F M
Sbjct: 514 LIDMYAKCGSLGQARRIFDSM 534
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 22/161 (13%)
Query: 50 CSTMRELKQ---IHAQMLRTSLFFDPCADYHV-------------RLVFSQISNPTIYTC 93
CS+ R L Q IH +L ++ +D + H+ R VF + + +
Sbjct: 77 CSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSY 136
Query: 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA---DIYVEKQLHSQAIK 150
S++ GY+ EA Y +M+ + L+PD+F F S+ K+CA D+ + KQLH+Q IK
Sbjct: 137 TSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIK 196
Query: 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191
+S N LI MY +Q +A ++FY + ++++
Sbjct: 197 LESSSHLIAQNALIAMYVR---FNQMSDASRVFYGIPMKDL 234
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 107/242 (44%), Gaps = 45/242 (18%)
Query: 57 KQIHAQMLR---TSLFFDPCADYHVRLVFSQISNPT----------IYTCNSIVRGYTNK 103
KQ+HAQ+++ +S A + + F+Q+S+ + + + +SI+ G++
Sbjct: 188 KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQL 247
Query: 104 NLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIY---VEKQLHSQAIKFGLASDSFL 159
EA EM+ G+ P+ ++F S K+C+ + Q+H IK LA ++
Sbjct: 248 GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIA 307
Query: 160 HNTLINMYSSCWCLDQ----------------------------PDEAIKIFYRMEIENV 191
+L +MY+ C L+ DEA+ +F +M
Sbjct: 308 GCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGF 367
Query: 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251
P+A++L ++L A+ + L ++H + + GF + + + +L+ Y C + ++
Sbjct: 368 IPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFN 427
Query: 252 LF 253
LF
Sbjct: 428 LF 429
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 47 LEKCSTMRELK---QIHAQMLRTSL------------FFDPCADY-HVRLVFSQISNPTI 90
L C + LK Q+H L+T L + C R +F + N +
Sbjct: 480 LRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDV 539
Query: 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI-YVEKQL 144
+ ++++ GY EA + + EM G+ P+ F + +C+ + VE+ L
Sbjct: 540 VSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGL 594
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA 136
R VF ++ + T ++ GYT A M +G+ P+ SL C
Sbjct: 271 EARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCG 330
Query: 137 D---IYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC--------------------W-- 171
D + K LH A++ + SD + +LI+MY+ C W
Sbjct: 331 DALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSA 390
Query: 172 ----CLDQP--DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225
C+ +A+ +F RM E+V+PN TL ++L A A DLR +H + ++G
Sbjct: 391 IIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTG 450
Query: 226 FWSHVELKTTLMDAYCKCKFVSRAWDLF 253
F S ++ T L+ Y KC + A +F
Sbjct: 451 FMSSLDAATGLVHVYSKCGTLESAHKIF 478
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL--IPDRFMFPSLFKS 134
+ R +F ++ ++ + N ++R Y + L+H+A + M+ +G+ +PD + +P + K+
Sbjct: 67 YARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKA 126
Query: 135 CADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP--------------- 176
++ K +H + ++ D ++ N L+ MY + ++
Sbjct: 127 AGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISW 186
Query: 177 -------------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223
++A+ +F M E+V + T+V++L +DL + VHK V+E
Sbjct: 187 NTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEE 246
Query: 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256
+E+K L++ Y KC + A +F +M
Sbjct: 247 KRLGDKIEVKNALVNMYLKCGRMDEARFVFDRM 279
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 61/276 (22%)
Query: 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFD--PCADYHVRLV-FSQIS----------- 86
H LV LE C++ + KQ+ AQ++R +L D P + RL+ FS I+
Sbjct: 35 HQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMS----RLIFFSAITYPENLDLAKLL 90
Query: 87 ------NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140
NP ++ N+++ ++ +E F Y MI + PDR F L K+ + +
Sbjct: 91 FLNFTPNPNVFVYNTMISAVSSSK--NECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSE 148
Query: 141 EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWC----------LDQPD------------ 177
KQ+H I G L+ ++L N+L+ Y + PD
Sbjct: 149 VKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYA 208
Query: 178 ------EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--FWSH 229
EA+K++++M + ++P+ T++++L D+R K VH ++ G + S+
Sbjct: 209 KQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSN 268
Query: 230 VELKTTLMDAYCKCK---FVSRAWDLFVKM-LFPWN 261
+ L L+D Y KCK RA+D K + WN
Sbjct: 269 LILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWN 304
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 81 VFSQISNPTIYTCNSIVRGYTNKNLHHEAF--LFYHEMIVQGLIPDRFMFPSLFKSCA-- 136
VF Q+ + + NS++ GY+ K LFY IV+ + PDR SL A
Sbjct: 322 VFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANN 381
Query: 137 -DIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP------------------- 176
++ + +H I+ L D+FL + LI+MY C +++
Sbjct: 382 GELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMI 441
Query: 177 ---------DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGF 226
+A+++F RM+ E V PN VTL+ VLTA + + + V + D+ GF
Sbjct: 442 TGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGF 501
Query: 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257
E +L+D C+ V A D+ K +
Sbjct: 502 DPETEHYGSLVDLLCRAGRVEEAKDIVQKKM 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,722,063
Number of Sequences: 539616
Number of extensions: 4497333
Number of successful extensions: 17787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 15071
Number of HSP's gapped (non-prelim): 1904
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)