Query 040801
Match_columns 323
No_of_seqs 198 out of 2462
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.7E-47 8E-52 374.7 17.5 294 26-322 426-764 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.9E-47 1.5E-51 372.7 17.2 286 34-322 504-857 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-44 4.4E-49 357.6 22.5 247 13-259 128-453 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.3E-44 5.1E-49 349.7 19.7 285 34-322 120-472 (697)
5 PLN03081 pentatricopeptide (PP 100.0 3.1E-44 6.8E-49 348.8 16.7 282 4-292 156-489 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-42 2.3E-47 345.3 20.7 312 4-322 220-635 (857)
7 PRK11788 tetratricopeptide rep 99.7 4.1E-14 8.8E-19 128.9 22.7 257 37-313 69-354 (389)
8 PF13041 PPR_2: PPR repeat fam 99.6 3.5E-15 7.6E-20 94.0 5.7 50 88-137 1-50 (50)
9 KOG4422 Uncharacterized conser 99.6 2.9E-13 6.3E-18 117.7 17.9 219 39-259 118-385 (625)
10 PF13041 PPR_2: PPR repeat fam 99.6 1.5E-14 3.3E-19 91.1 6.7 50 155-207 1-50 (50)
11 KOG4422 Uncharacterized conser 99.5 1.2E-12 2.5E-17 114.0 17.9 192 34-225 204-463 (625)
12 PRK11788 tetratricopeptide rep 99.5 2.1E-12 4.6E-17 117.6 19.7 232 45-285 43-302 (389)
13 TIGR02917 PEP_TPR_lipo putativ 99.4 6E-11 1.3E-15 118.6 22.4 212 38-259 568-799 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.3 3.9E-10 8.5E-15 112.8 22.9 238 36-287 600-859 (899)
15 KOG4318 Bicoid mRNA stability 99.1 7.1E-10 1.5E-14 104.5 11.8 208 87-319 22-278 (1088)
16 PF12854 PPR_1: PPR repeat 99.1 1.7E-10 3.7E-15 65.7 4.1 34 224-257 1-34 (34)
17 KOG4318 Bicoid mRNA stability 99.1 1.9E-09 4.1E-14 101.6 12.3 209 58-280 11-286 (1088)
18 PF13429 TPR_15: Tetratricopep 99.0 2.2E-09 4.7E-14 93.4 10.4 227 43-278 14-264 (280)
19 PF12854 PPR_1: PPR repeat 98.9 8.7E-10 1.9E-14 62.7 3.6 32 152-186 2-33 (34)
20 PRK15174 Vi polysaccharide exp 98.9 4.3E-07 9.4E-12 88.2 22.2 154 100-259 187-347 (656)
21 PRK15174 Vi polysaccharide exp 98.9 5.5E-07 1.2E-11 87.4 22.6 235 39-285 78-338 (656)
22 TIGR02521 type_IV_pilW type IV 98.9 1.7E-06 3.6E-11 72.1 22.2 196 38-258 32-231 (234)
23 PF13429 TPR_15: Tetratricopep 98.7 1.1E-07 2.5E-12 82.6 11.7 211 41-258 48-276 (280)
24 TIGR00756 PPR pentatricopeptid 98.7 2.6E-08 5.7E-13 57.1 4.6 35 91-125 1-35 (35)
25 TIGR02521 type_IV_pilW type IV 98.7 4.1E-06 8.9E-11 69.7 18.4 165 89-259 30-198 (234)
26 TIGR00990 3a0801s09 mitochondr 98.6 1.2E-05 2.5E-10 78.0 22.0 232 48-287 305-564 (615)
27 PF13812 PPR_3: Pentatricopept 98.6 9E-08 2E-12 54.5 4.3 34 90-123 1-34 (34)
28 PRK09782 bacteriophage N4 rece 98.5 4.5E-05 9.7E-10 76.8 22.8 209 39-259 479-706 (987)
29 TIGR00990 3a0801s09 mitochondr 98.5 4.7E-05 1E-09 73.8 22.5 211 38-258 332-570 (615)
30 PRK10747 putative protoheme IX 98.5 3.9E-05 8.4E-10 70.2 20.5 227 48-286 129-382 (398)
31 PRK09782 bacteriophage N4 rece 98.5 6.9E-05 1.5E-09 75.5 23.5 192 77-278 494-693 (987)
32 TIGR00756 PPR pentatricopeptid 98.4 3.2E-07 6.9E-12 52.4 3.8 33 159-194 2-34 (35)
33 PRK11447 cellulose synthase su 98.4 4.8E-05 1E-09 79.0 21.8 205 42-259 466-700 (1157)
34 PF01535 PPR: PPR repeat; Int 98.4 3.6E-07 7.9E-12 50.7 3.6 31 91-121 1-31 (31)
35 PF13812 PPR_3: Pentatricopept 98.4 6.9E-07 1.5E-11 50.7 4.2 32 197-228 3-34 (34)
36 TIGR00540 hemY_coli hemY prote 98.3 0.00014 3E-09 66.9 20.3 234 44-287 125-392 (409)
37 PRK14574 hmsH outer membrane p 98.3 0.00013 2.9E-09 72.0 20.9 85 175-259 307-396 (822)
38 PF08579 RPM2: Mitochondrial r 98.3 4.8E-06 1E-10 60.1 8.0 76 94-169 29-116 (120)
39 PRK11447 cellulose synthase su 98.3 0.00019 4.2E-09 74.5 22.5 209 38-258 496-739 (1157)
40 PRK10049 pgaA outer membrane p 98.2 0.00048 1E-08 68.5 22.9 199 47-272 247-470 (765)
41 PF06239 ECSIT: Evolutionarily 98.2 2.2E-05 4.7E-10 63.7 10.4 118 87-223 44-167 (228)
42 PRK12370 invasion protein regu 98.2 0.00036 7.8E-09 66.7 20.2 173 77-259 279-470 (553)
43 PF01535 PPR: PPR repeat; Int 98.2 2.5E-06 5.3E-11 47.2 3.3 20 201-220 6-25 (31)
44 COG2956 Predicted N-acetylgluc 98.2 0.00015 3.1E-09 62.1 15.1 158 96-259 113-278 (389)
45 KOG1840 Kinesin light chain [C 98.1 0.00022 4.7E-09 66.3 17.0 234 40-288 202-473 (508)
46 PRK10747 putative protoheme IX 98.1 0.0008 1.7E-08 61.6 20.3 233 42-283 87-349 (398)
47 PRK10049 pgaA outer membrane p 98.1 0.0014 3E-08 65.2 22.5 216 39-259 17-301 (765)
48 PRK12370 invasion protein regu 98.0 0.00064 1.4E-08 65.0 19.2 171 77-259 322-502 (553)
49 KOG1126 DNA-binding cell divis 98.0 0.00012 2.6E-09 68.1 12.8 224 47-284 363-610 (638)
50 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3.1E-09 52.6 10.5 79 162-243 30-117 (120)
51 COG3071 HemY Uncharacterized e 98.0 0.0036 7.9E-08 55.2 20.4 201 49-259 130-357 (400)
52 COG2956 Predicted N-acetylgluc 98.0 0.0012 2.6E-08 56.6 17.0 199 77-285 53-269 (389)
53 PF06239 ECSIT: Evolutionarily 97.9 5.4E-05 1.2E-09 61.5 7.7 114 122-257 44-166 (228)
54 PF10037 MRP-S27: Mitochondria 97.9 0.00013 2.7E-09 66.3 10.8 119 87-208 63-186 (429)
55 PRK14574 hmsH outer membrane p 97.8 0.0044 9.4E-08 61.6 21.1 194 42-259 297-513 (822)
56 KOG1840 Kinesin light chain [C 97.8 0.0013 2.8E-08 61.3 16.2 202 42-257 246-477 (508)
57 TIGR00540 hemY_coli hemY prote 97.8 0.0056 1.2E-07 56.3 20.5 235 41-281 86-354 (409)
58 PF10037 MRP-S27: Mitochondria 97.8 0.00051 1.1E-08 62.4 13.1 129 112-243 50-186 (429)
59 KOG1129 TPR repeat-containing 97.8 0.00073 1.6E-08 58.1 12.6 176 77-259 241-424 (478)
60 KOG4626 O-linked N-acetylgluco 97.7 0.00078 1.7E-08 62.6 12.5 231 37-279 116-371 (966)
61 KOG4626 O-linked N-acetylgluco 97.7 0.018 3.9E-07 53.9 21.1 204 42-258 257-484 (966)
62 COG3071 HemY Uncharacterized e 97.7 0.02 4.3E-07 50.7 20.4 173 87-264 115-297 (400)
63 KOG1126 DNA-binding cell divis 97.7 0.0013 2.7E-08 61.5 13.6 172 77-258 337-517 (638)
64 KOG1070 rRNA processing protei 97.6 0.0091 2E-07 60.5 19.3 204 33-259 1454-1663(1710)
65 PF12569 NARP1: NMDA receptor- 97.6 0.02 4.2E-07 53.9 20.8 34 34-67 34-68 (517)
66 TIGR03302 OM_YfiO outer membra 97.5 0.015 3.2E-07 49.0 17.8 164 89-259 32-232 (235)
67 KOG1155 Anaphase-promoting com 97.5 0.023 5.1E-07 51.3 18.9 245 49-305 274-552 (559)
68 PF04733 Coatomer_E: Coatomer 97.5 0.005 1.1E-07 53.7 14.8 95 157-258 131-229 (290)
69 PRK11189 lipoprotein NlpI; Pro 97.5 0.036 7.8E-07 48.6 19.5 161 87-259 95-265 (296)
70 PF04733 Coatomer_E: Coatomer 97.4 0.0058 1.3E-07 53.2 14.0 150 98-259 110-265 (290)
71 PRK15359 type III secretion sy 97.4 0.0046 1E-07 47.9 12.1 117 141-266 12-129 (144)
72 COG3063 PilF Tfp pilus assembl 97.3 0.038 8.3E-07 45.5 16.3 183 94-284 39-226 (250)
73 KOG1155 Anaphase-promoting com 97.3 0.014 3E-07 52.7 14.8 131 141-277 349-481 (559)
74 KOG1070 rRNA processing protei 97.3 0.04 8.7E-07 56.1 19.1 187 87-281 1454-1653(1710)
75 KOG1914 mRNA cleavage and poly 97.3 0.042 9.2E-07 50.6 17.8 148 106-259 347-501 (656)
76 KOG2003 TPR repeat-containing 97.2 0.049 1.1E-06 49.2 17.5 161 101-268 535-699 (840)
77 COG4783 Putative Zn-dependent 97.2 0.16 3.4E-06 46.4 21.5 216 42-266 207-444 (484)
78 cd05804 StaR_like StaR_like; a 97.2 0.023 5E-07 50.9 16.3 153 98-259 51-215 (355)
79 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.017 3.7E-07 52.4 14.8 108 141-258 188-296 (395)
80 KOG1129 TPR repeat-containing 97.2 0.014 2.9E-07 50.5 13.0 207 47-259 233-458 (478)
81 KOG3941 Intermediate in Toll s 97.2 0.0044 9.5E-08 52.4 9.8 95 77-171 52-172 (406)
82 KOG2076 RNA polymerase III tra 97.1 0.059 1.3E-06 52.5 18.2 166 88-258 314-511 (895)
83 cd00189 TPR Tetratricopeptide 97.1 0.009 1.9E-07 41.1 10.1 94 160-258 3-96 (100)
84 TIGR02552 LcrH_SycD type III s 97.1 0.016 3.5E-07 44.0 12.0 98 157-259 17-114 (135)
85 PF05843 Suf: Suppressor of fo 97.1 0.0054 1.2E-07 53.3 10.0 111 141-257 20-134 (280)
86 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.023 5.1E-07 51.5 14.0 120 93-222 172-295 (395)
87 PF09976 TPR_21: Tetratricopep 97.0 0.033 7.1E-07 43.1 13.1 108 141-255 30-143 (145)
88 PRK10370 formate-dependent nit 97.0 0.13 2.8E-06 42.2 16.8 146 96-259 22-173 (198)
89 KOG2003 TPR repeat-containing 97.0 0.043 9.3E-07 49.5 14.6 187 49-245 502-709 (840)
90 TIGR03302 OM_YfiO outer membra 96.9 0.2 4.3E-06 42.1 18.8 162 39-224 35-232 (235)
91 KOG1914 mRNA cleavage and poly 96.9 0.24 5.3E-06 45.9 18.9 109 196-305 367-480 (656)
92 PF12895 Apc3: Anaphase-promot 96.9 0.0037 8.1E-08 43.4 6.1 78 175-255 4-83 (84)
93 KOG3081 Vesicle coat complex C 96.8 0.042 9E-07 46.3 12.5 152 97-258 115-270 (299)
94 PRK11189 lipoprotein NlpI; Pro 96.8 0.33 7.2E-06 42.5 19.3 125 91-223 65-193 (296)
95 PF05843 Suf: Suppressor of fo 96.8 0.023 5E-07 49.4 11.3 143 91-240 2-150 (280)
96 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.06 1.3E-06 39.5 12.1 98 159-259 4-105 (119)
97 KOG3941 Intermediate in Toll s 96.6 0.01 2.2E-07 50.3 7.7 82 141-222 91-186 (406)
98 COG5010 TadD Flp pilus assembl 96.6 0.21 4.7E-06 41.9 15.3 155 129-289 70-226 (257)
99 PF12569 NARP1: NMDA receptor- 96.6 0.21 4.5E-06 47.2 17.1 96 159-260 196-292 (517)
100 KOG2076 RNA polymerase III tra 96.6 0.42 9E-06 46.9 19.0 239 36-279 206-500 (895)
101 KOG3081 Vesicle coat complex C 96.6 0.11 2.4E-06 43.8 13.3 148 109-266 92-244 (299)
102 KOG2002 TPR-containing nuclear 96.6 0.083 1.8E-06 52.0 14.3 210 43-259 502-745 (1018)
103 KOG1915 Cell cycle control pro 96.5 0.41 8.9E-06 43.8 17.6 54 77-132 159-214 (677)
104 KOG0547 Translocase of outer m 96.5 0.18 3.8E-06 46.2 15.3 160 89-256 393-563 (606)
105 KOG3785 Uncharacterized conser 96.5 0.028 6.1E-07 49.2 9.8 172 77-259 272-457 (557)
106 PF13170 DUF4003: Protein of u 96.5 0.076 1.6E-06 46.4 12.6 193 52-259 34-250 (297)
107 PRK10370 formate-dependent nit 96.4 0.21 4.5E-06 41.0 14.3 32 87-118 70-101 (198)
108 KOG1128 Uncharacterized conser 96.4 0.08 1.7E-06 50.5 12.9 202 41-258 402-615 (777)
109 PF12921 ATP13: Mitochondrial 96.4 0.019 4.1E-07 43.3 7.3 46 193-238 50-96 (126)
110 KOG0495 HAT repeat protein [RN 96.4 0.66 1.4E-05 44.2 18.4 211 40-259 519-748 (913)
111 KOG2053 Mitochondrial inherita 96.3 1.1 2.4E-05 44.1 20.1 206 49-263 21-259 (932)
112 TIGR02552 LcrH_SycD type III s 96.3 0.18 4E-06 38.1 12.7 93 91-188 18-113 (135)
113 PRK15359 type III secretion sy 96.3 0.15 3.3E-06 39.4 12.2 63 157-223 58-120 (144)
114 PF12921 ATP13: Mitochondrial 96.2 0.027 5.8E-07 42.5 7.3 66 194-259 1-81 (126)
115 KOG4340 Uncharacterized conser 96.2 0.12 2.5E-06 44.4 11.5 206 46-257 87-337 (459)
116 PF14559 TPR_19: Tetratricopep 96.2 0.025 5.5E-07 37.2 6.3 53 206-259 2-54 (68)
117 KOG0547 Translocase of outer m 96.2 0.31 6.7E-06 44.7 14.7 149 102-258 338-490 (606)
118 COG4783 Putative Zn-dependent 96.1 0.28 6.1E-06 44.8 14.4 142 91-259 308-454 (484)
119 PRK15179 Vi polysaccharide bio 96.1 0.4 8.7E-06 47.1 16.6 158 87-259 83-245 (694)
120 KOG2047 mRNA splicing factor [ 96.0 1.4 3.1E-05 41.9 18.8 107 77-188 156-276 (835)
121 PF09976 TPR_21: Tetratricopep 96.0 0.33 7.1E-06 37.5 12.9 116 157-276 12-132 (145)
122 cd05804 StaR_like StaR_like; a 96.0 1.1 2.4E-05 40.0 22.4 27 91-117 149-175 (355)
123 COG5010 TadD Flp pilus assembl 95.9 0.49 1.1E-05 39.8 13.9 159 94-259 70-231 (257)
124 PRK02603 photosystem I assembl 95.9 0.43 9.4E-06 38.0 13.5 99 157-259 35-149 (172)
125 PRK15179 Vi polysaccharide bio 95.9 0.54 1.2E-05 46.2 16.2 96 156-258 85-182 (694)
126 PF14559 TPR_19: Tetratricopep 95.7 0.048 1E-06 35.8 6.2 63 169-237 3-65 (68)
127 KOG2047 mRNA splicing factor [ 95.7 2.1 4.4E-05 40.9 20.4 215 40-258 172-453 (835)
128 PF03704 BTAD: Bacterial trans 95.7 0.051 1.1E-06 42.0 7.1 73 157-233 62-139 (146)
129 KOG1173 Anaphase-promoting com 95.6 1.8 3.8E-05 40.6 17.4 208 41-258 282-517 (611)
130 KOG0495 HAT repeat protein [RN 95.6 2.2 4.8E-05 40.8 21.6 127 157-287 719-876 (913)
131 PRK14720 transcript cleavage f 95.6 0.61 1.3E-05 46.8 15.5 129 87-224 28-178 (906)
132 PLN03088 SGT1, suppressor of 95.5 0.19 4.1E-06 45.3 10.9 83 175-259 17-99 (356)
133 KOG1173 Anaphase-promoting com 95.5 2.2 4.8E-05 40.0 17.9 253 40-305 247-534 (611)
134 cd00189 TPR Tetratricopeptide 95.5 0.27 6E-06 33.3 9.8 27 93-119 3-29 (100)
135 PF03704 BTAD: Bacterial trans 95.5 0.14 3.1E-06 39.5 8.9 70 196-266 63-137 (146)
136 PF13170 DUF4003: Protein of u 95.4 1.1 2.3E-05 39.3 15.0 157 53-222 78-248 (297)
137 KOG2002 TPR-containing nuclear 95.4 2.6 5.7E-05 42.0 18.4 217 36-259 269-525 (1018)
138 CHL00033 ycf3 photosystem I as 95.2 0.66 1.4E-05 36.7 12.3 102 150-255 28-138 (168)
139 KOG3616 Selective LIM binding 95.2 0.65 1.4E-05 44.9 13.5 110 175-297 747-858 (1636)
140 TIGR02795 tol_pal_ybgF tol-pal 95.1 0.87 1.9E-05 33.1 12.2 28 92-119 4-31 (119)
141 PRK10153 DNA-binding transcrip 94.9 2.4 5.1E-05 40.3 16.6 137 119-259 331-482 (517)
142 PRK14720 transcript cleavage f 94.8 3.7 8E-05 41.4 18.1 242 37-293 31-289 (906)
143 KOG0985 Vesicle coat protein c 94.8 5 0.00011 40.6 18.4 188 41-253 988-1189(1666)
144 PLN02789 farnesyltranstransfer 94.7 2.8 6.1E-05 37.1 19.3 197 40-242 40-267 (320)
145 KOG4162 Predicted calmodulin-b 94.7 4.7 0.0001 39.3 18.2 202 36-258 322-541 (799)
146 KOG1915 Cell cycle control pro 94.6 3.7 8E-05 37.9 19.2 210 37-266 322-543 (677)
147 PF13432 TPR_16: Tetratricopep 94.5 0.14 3.1E-06 33.2 5.5 54 203-257 5-58 (65)
148 smart00299 CLH Clathrin heavy 94.4 1.7 3.6E-05 33.2 13.8 87 92-186 9-95 (140)
149 PF13424 TPR_12: Tetratricopep 94.4 0.15 3.4E-06 34.4 5.8 62 196-257 6-73 (78)
150 COG5107 RNA14 Pre-mRNA 3'-end 94.4 0.58 1.2E-05 42.6 10.5 128 125-259 397-531 (660)
151 KOG1128 Uncharacterized conser 94.4 0.77 1.7E-05 44.2 11.8 153 92-259 426-582 (777)
152 PF04840 Vps16_C: Vps16, C-ter 94.2 3.7 8.1E-05 36.3 15.5 87 159-258 179-265 (319)
153 PF13414 TPR_11: TPR repeat; P 94.2 0.29 6.3E-06 32.1 6.6 61 195-256 3-64 (69)
154 KOG2796 Uncharacterized conser 94.1 1.2 2.7E-05 37.7 11.2 151 96-259 155-315 (366)
155 PF09205 DUF1955: Domain of un 93.8 2 4.3E-05 32.5 10.8 138 100-262 12-152 (161)
156 PRK15363 pathogenicity island 93.6 1.5 3.2E-05 34.3 10.3 89 165-259 43-132 (157)
157 COG4700 Uncharacterized protei 93.6 2.7 5.8E-05 33.9 11.7 103 152-259 84-189 (251)
158 COG3063 PilF Tfp pilus assembl 93.5 3.8 8.2E-05 34.1 19.4 192 42-259 40-236 (250)
159 KOG2376 Signal recognition par 93.4 3.6 7.8E-05 38.9 14.0 119 97-225 19-140 (652)
160 PLN03088 SGT1, suppressor of 93.4 1.6 3.4E-05 39.4 11.8 99 98-203 10-111 (356)
161 CHL00033 ycf3 photosystem I as 93.2 1.6 3.6E-05 34.4 10.6 97 91-221 36-139 (168)
162 PF13414 TPR_11: TPR repeat; P 93.1 0.73 1.6E-05 30.1 7.2 65 156-224 2-67 (69)
163 COG5107 RNA14 Pre-mRNA 3'-end 93.1 6.4 0.00014 36.2 14.6 145 90-243 397-548 (660)
164 KOG1125 TPR repeat-containing 93.0 5.6 0.00012 37.4 14.6 199 47-256 295-524 (579)
165 PF12895 Apc3: Anaphase-promot 93.0 0.3 6.5E-06 33.6 5.3 75 141-220 8-83 (84)
166 PF13432 TPR_16: Tetratricopep 93.0 0.73 1.6E-05 29.7 6.9 57 164-224 4-60 (65)
167 KOG3060 Uncharacterized conser 92.9 5.1 0.00011 33.9 15.3 79 177-257 103-181 (289)
168 PF13371 TPR_9: Tetratricopept 92.9 0.44 9.5E-06 31.6 5.9 56 203-259 3-58 (73)
169 PF12688 TPR_5: Tetratrico pep 92.8 3.1 6.6E-05 31.0 10.9 87 166-257 10-102 (120)
170 PRK10153 DNA-binding transcrip 92.8 7.4 0.00016 37.1 15.8 138 87-233 334-489 (517)
171 PRK10803 tol-pal system protei 92.7 2 4.3E-05 36.9 10.9 98 157-259 143-246 (263)
172 PF13929 mRNA_stabil: mRNA sta 92.6 2.8 6E-05 36.2 11.4 127 128-255 134-263 (292)
173 KOG3617 WD40 and TPR repeat-co 92.6 12 0.00026 37.2 17.8 75 194-280 911-985 (1416)
174 KOG2376 Signal recognition par 92.6 9.6 0.00021 36.2 18.2 49 207-257 470-518 (652)
175 smart00299 CLH Clathrin heavy 92.5 3.7 8E-05 31.2 11.8 114 129-266 11-128 (140)
176 PF13762 MNE1: Mitochondrial s 92.5 3.4 7.3E-05 31.8 10.7 102 143-247 23-132 (145)
177 PF04840 Vps16_C: Vps16, C-ter 92.1 1.3 2.9E-05 39.1 9.4 52 197-252 179-230 (319)
178 KOG3616 Selective LIM binding 92.0 2 4.3E-05 41.7 10.6 143 99-257 741-909 (1636)
179 PF13371 TPR_9: Tetratricopept 92.0 1.7 3.8E-05 28.6 7.9 62 165-232 3-64 (73)
180 PF12688 TPR_5: Tetratrico pep 91.9 0.95 2.1E-05 33.7 7.0 59 201-259 7-67 (120)
181 PF13929 mRNA_stabil: mRNA sta 91.9 7.7 0.00017 33.5 14.1 102 177-278 145-254 (292)
182 PRK04841 transcriptional regul 91.8 17 0.00037 37.2 19.0 163 93-258 576-759 (903)
183 KOG3617 WD40 and TPR repeat-co 91.4 3.8 8.3E-05 40.4 11.9 67 175-256 927-993 (1416)
184 PF13424 TPR_12: Tetratricopep 91.4 0.61 1.3E-05 31.4 5.2 64 157-223 5-74 (78)
185 PLN02789 farnesyltranstransfer 91.3 10 0.00022 33.7 18.6 129 141-273 91-227 (320)
186 KOG1174 Anaphase-promoting com 91.2 11 0.00025 34.2 16.2 160 87-255 229-393 (564)
187 KOG0985 Vesicle coat protein c 91.1 11 0.00025 38.2 14.9 82 175-256 658-750 (1666)
188 KOG1174 Anaphase-promoting com 91.0 12 0.00027 34.1 15.6 208 41-258 236-499 (564)
189 KOG0553 TPR repeat-containing 90.4 3.5 7.6E-05 35.6 9.7 82 175-259 96-178 (304)
190 PF13428 TPR_14: Tetratricopep 90.2 0.62 1.3E-05 27.6 3.8 35 232-266 3-38 (44)
191 KOG2053 Mitochondrial inherita 89.8 5.7 0.00012 39.4 11.6 116 149-274 37-156 (932)
192 PLN03098 LPA1 LOW PSII ACCUMUL 89.4 2.3 5E-05 39.1 8.3 95 156-259 74-174 (453)
193 KOG1125 TPR repeat-containing 89.3 20 0.00043 33.9 15.3 82 176-259 410-493 (579)
194 PRK04841 transcriptional regul 89.2 16 0.00035 37.3 15.5 156 99-257 461-639 (903)
195 PLN03098 LPA1 LOW PSII ACCUMUL 89.1 5.2 0.00011 36.8 10.4 96 123-227 73-177 (453)
196 KOG3785 Uncharacterized conser 89.0 16 0.00035 32.6 16.2 180 77-266 303-497 (557)
197 PRK02603 photosystem I assembl 88.9 10 0.00022 30.0 14.1 49 158-210 73-121 (172)
198 KOG4570 Uncharacterized conser 88.8 1.3 2.8E-05 38.5 6.0 48 175-222 115-162 (418)
199 KOG2796 Uncharacterized conser 88.5 15 0.00032 31.5 13.2 99 158-259 178-281 (366)
200 COG3629 DnrI DNA-binding trans 88.2 6.8 0.00015 33.9 10.0 78 158-239 154-236 (280)
201 KOG1156 N-terminal acetyltrans 88.0 26 0.00057 33.8 17.1 216 37-259 143-434 (700)
202 PF14938 SNAP: Soluble NSF att 87.5 18 0.00039 31.3 17.5 208 40-266 38-269 (282)
203 KOG1538 Uncharacterized conser 87.2 24 0.00052 34.2 13.5 207 41-259 602-846 (1081)
204 PRK10866 outer membrane biogen 87.1 18 0.00038 30.7 15.1 55 202-256 182-238 (243)
205 COG3629 DnrI DNA-binding trans 86.9 2.7 5.9E-05 36.3 6.9 71 195-266 153-228 (280)
206 KOG1156 N-terminal acetyltrans 86.9 31 0.00066 33.3 18.3 102 154-261 366-470 (700)
207 COG4235 Cytochrome c biogenesi 86.8 16 0.00036 31.6 11.5 28 89-116 155-182 (287)
208 KOG4570 Uncharacterized conser 86.8 6.2 0.00014 34.5 8.9 100 87-190 61-165 (418)
209 KOG3060 Uncharacterized conser 86.7 19 0.00041 30.7 19.3 187 51-259 26-220 (289)
210 PF13281 DUF4071: Domain of un 86.7 24 0.00052 31.9 16.1 168 95-266 146-339 (374)
211 PF13176 TPR_7: Tetratricopept 86.3 1.5 3.2E-05 24.7 3.5 25 232-256 1-25 (36)
212 PF13176 TPR_7: Tetratricopept 86.1 1.5 3.4E-05 24.6 3.6 26 92-117 1-26 (36)
213 PF10602 RPN7: 26S proteasome 86.0 15 0.00033 29.4 10.5 98 157-259 36-142 (177)
214 PF13762 MNE1: Mitochondrial s 85.8 10 0.00022 29.2 8.9 80 91-170 40-128 (145)
215 PF07035 Mic1: Colon cancer-as 85.8 16 0.00035 29.0 12.6 52 112-164 16-67 (167)
216 KOG4340 Uncharacterized conser 84.3 28 0.0006 30.5 14.8 209 40-259 13-270 (459)
217 PF00637 Clathrin: Region in C 83.4 1.1 2.3E-05 34.4 2.7 86 163-258 13-98 (143)
218 PF11207 DUF2989: Protein of u 83.2 15 0.00032 30.1 9.1 73 177-250 123-198 (203)
219 PF14938 SNAP: Soluble NSF att 83.1 28 0.0006 30.1 11.7 97 159-259 116-225 (282)
220 PF07035 Mic1: Colon cancer-as 82.6 22 0.00048 28.1 13.8 119 143-276 15-134 (167)
221 PRK10803 tol-pal system protei 82.5 6.1 0.00013 34.0 7.2 63 195-259 143-209 (263)
222 PF09205 DUF1955: Domain of un 82.5 7.9 0.00017 29.4 6.7 68 156-227 85-152 (161)
223 COG4700 Uncharacterized protei 81.7 27 0.00057 28.4 13.8 97 122-223 86-188 (251)
224 PF10602 RPN7: 26S proteasome 81.4 3.4 7.4E-05 33.1 5.0 92 91-187 37-140 (177)
225 PF07079 DUF1347: Protein of u 80.9 47 0.001 30.8 13.5 138 101-243 17-180 (549)
226 PF10300 DUF3808: Protein of u 80.7 46 0.001 31.3 12.9 158 94-257 192-374 (468)
227 PF02284 COX5A: Cytochrome c o 80.3 19 0.00042 25.9 9.6 60 178-238 28-87 (108)
228 KOG0553 TPR repeat-containing 80.2 8.2 0.00018 33.4 7.0 122 159-295 53-183 (304)
229 PF13374 TPR_10: Tetratricopep 79.7 4.9 0.00011 22.8 4.2 29 90-118 2-30 (42)
230 PF13428 TPR_14: Tetratricopep 78.7 5 0.00011 23.5 4.0 33 91-125 2-34 (44)
231 KOG1127 TPR repeat-containing 78.5 18 0.00039 36.7 9.5 123 156-287 525-652 (1238)
232 PF10300 DUF3808: Protein of u 78.1 46 0.001 31.3 12.0 113 158-273 230-349 (468)
233 PF00637 Clathrin: Region in C 77.8 2.7 5.8E-05 32.1 3.3 81 131-221 13-96 (143)
234 cd00923 Cyt_c_Oxidase_Va Cytoc 77.2 10 0.00022 27.0 5.5 34 189-222 36-69 (103)
235 PF02284 COX5A: Cytochrome c o 77.1 7 0.00015 28.1 4.8 62 198-259 11-74 (108)
236 PF07721 TPR_4: Tetratricopept 76.9 5.2 0.00011 20.5 3.2 22 233-254 4-25 (26)
237 PRK15363 pathogenicity island 76.3 35 0.00076 26.7 11.0 94 126-224 39-132 (157)
238 KOG2041 WD40 repeat protein [G 76.2 27 0.00059 34.1 9.7 144 103-257 747-905 (1189)
239 PF11207 DUF2989: Protein of u 74.7 46 0.00099 27.3 11.6 81 131-215 113-198 (203)
240 PF13374 TPR_10: Tetratricopep 74.6 7.9 0.00017 21.8 4.1 25 197-221 4-28 (42)
241 PRK15331 chaperone protein Sic 74.3 41 0.00089 26.6 9.0 83 175-259 52-134 (165)
242 COG1729 Uncharacterized protei 74.2 41 0.00089 28.8 9.5 96 158-259 143-244 (262)
243 COG4235 Cytochrome c biogenesi 73.6 61 0.0013 28.2 12.6 129 122-266 132-263 (287)
244 PF13281 DUF4071: Domain of un 73.6 72 0.0016 29.0 16.8 125 98-224 187-334 (374)
245 KOG1127 TPR repeat-containing 73.3 1.2E+02 0.0025 31.4 13.8 172 77-257 510-698 (1238)
246 PF11848 DUF3368: Domain of un 72.7 12 0.00025 22.7 4.4 32 207-238 14-45 (48)
247 PF11848 DUF3368: Domain of un 72.2 12 0.00025 22.7 4.4 38 97-134 9-46 (48)
248 KOG0548 Molecular co-chaperone 72.2 90 0.0019 29.5 13.8 215 41-277 228-471 (539)
249 PF11846 DUF3366: Domain of un 71.2 22 0.00047 28.8 7.2 60 200-259 113-173 (193)
250 PF04184 ST7: ST7 protein; In 70.9 79 0.0017 29.8 11.1 76 161-239 263-340 (539)
251 TIGR03504 FimV_Cterm FimV C-te 70.5 5.8 0.00012 23.6 2.6 26 236-261 5-30 (44)
252 KOG2610 Uncharacterized conser 70.3 81 0.0017 28.2 11.5 147 102-254 115-271 (491)
253 PF13512 TPR_18: Tetratricopep 68.6 52 0.0011 25.3 10.3 88 155-246 9-98 (142)
254 PF04184 ST7: ST7 protein; In 67.9 70 0.0015 30.1 10.1 81 200-280 264-346 (539)
255 KOG0548 Molecular co-chaperone 67.8 1.1E+02 0.0024 28.9 13.3 160 93-259 227-421 (539)
256 TIGR01228 hutU urocanate hydra 67.7 48 0.0011 31.0 9.0 67 104-182 208-278 (545)
257 PF11663 Toxin_YhaV: Toxin wit 67.6 5.9 0.00013 30.0 2.8 34 100-135 105-138 (140)
258 smart00638 LPD_N Lipoprotein N 67.4 1.2E+02 0.0027 29.2 14.9 116 87-209 307-432 (574)
259 PRK05414 urocanate hydratase; 66.8 53 0.0012 30.9 9.1 68 104-183 217-288 (556)
260 PF00515 TPR_1: Tetratricopept 66.8 18 0.00038 19.4 4.1 28 91-118 2-29 (34)
261 PF08631 SPO22: Meiosis protei 66.5 86 0.0019 27.1 15.0 154 101-257 4-184 (278)
262 PF10366 Vps39_1: Vacuolar sor 65.8 26 0.00057 25.5 5.9 28 231-258 40-67 (108)
263 COG5187 RPN7 26S proteasome re 65.8 65 0.0014 28.1 8.9 100 153-259 111-221 (412)
264 cd00923 Cyt_c_Oxidase_Va Cytoc 65.4 47 0.001 23.7 9.0 48 210-257 22-69 (103)
265 PRK10564 maltose regulon perip 65.1 12 0.00027 32.5 4.6 42 192-233 253-295 (303)
266 KOG2280 Vacuolar assembly/sort 63.5 1.5E+02 0.0034 29.4 11.8 28 91-118 547-574 (829)
267 PF13431 TPR_17: Tetratricopep 63.2 11 0.00024 20.7 2.8 22 229-250 12-33 (34)
268 KOG1538 Uncharacterized conser 62.2 1.6E+02 0.0034 29.0 11.4 93 193-294 745-846 (1081)
269 PF14689 SPOB_a: Sensor_kinase 61.7 14 0.0003 23.8 3.4 31 88-118 21-51 (62)
270 PF02847 MA3: MA3 domain; Int 61.1 30 0.00066 25.0 5.7 26 93-118 5-30 (113)
271 TIGR03504 FimV_Cterm FimV C-te 60.8 19 0.0004 21.5 3.5 26 96-121 5-30 (44)
272 PHA02875 ankyrin repeat protei 59.9 1.3E+02 0.0027 27.5 10.8 50 202-255 106-157 (413)
273 PF09613 HrpB1_HrpK: Bacterial 59.5 85 0.0019 24.7 11.7 61 160-224 10-73 (160)
274 KOG2280 Vacuolar assembly/sort 59.3 91 0.002 30.9 9.5 84 162-258 689-772 (829)
275 PF14689 SPOB_a: Sensor_kinase 58.8 31 0.00068 22.1 4.7 47 210-258 5-51 (62)
276 COG0735 Fur Fe2+/Zn2+ uptake r 58.8 60 0.0013 25.0 7.1 65 182-247 8-72 (145)
277 COG3898 Uncharacterized membra 58.8 1.5E+02 0.0032 27.2 16.4 166 89-266 117-299 (531)
278 PF11663 Toxin_YhaV: Toxin wit 57.7 6 0.00013 29.9 1.3 25 242-266 107-131 (140)
279 PF13181 TPR_8: Tetratricopept 57.4 25 0.00055 18.7 3.7 27 232-258 3-29 (34)
280 KOG2114 Vacuolar assembly/sort 57.3 2.2E+02 0.0048 28.8 14.8 138 100-258 378-518 (933)
281 PRK10564 maltose regulon perip 56.7 17 0.00038 31.6 4.1 44 88-131 254-298 (303)
282 KOG1920 IkappaB kinase complex 56.7 2.6E+02 0.0057 29.5 14.4 114 122-258 932-1054(1265)
283 COG1747 Uncharacterized N-term 56.1 1.9E+02 0.0041 27.6 15.1 171 87-267 63-241 (711)
284 PF09613 HrpB1_HrpK: Bacterial 56.0 99 0.0021 24.3 10.3 97 206-306 21-122 (160)
285 cd04439 DEP_1_P-Rex DEP (Dishe 54.9 23 0.0005 24.2 3.7 38 154-191 25-62 (81)
286 PF04053 Coatomer_WDAD: Coatom 54.4 1.1E+02 0.0025 28.5 9.3 125 40-185 298-427 (443)
287 KOG4077 Cytochrome c oxidase, 54.1 93 0.002 23.5 7.0 34 189-222 78-111 (149)
288 PF13525 YfiO: Outer membrane 53.9 1.2E+02 0.0026 24.7 15.0 53 99-151 14-71 (203)
289 PF10366 Vps39_1: Vacuolar sor 53.8 56 0.0012 23.7 5.9 27 92-118 41-67 (108)
290 KOG0543 FKBP-type peptidyl-pro 53.7 77 0.0017 28.8 7.7 65 194-259 256-320 (397)
291 TIGR02561 HrpB1_HrpK type III 53.6 1E+02 0.0023 23.9 7.9 46 175-224 25-73 (153)
292 PF10579 Rapsyn_N: Rapsyn N-te 53.4 40 0.00087 23.0 4.6 46 207-252 18-65 (80)
293 PRK11639 zinc uptake transcrip 53.3 95 0.0021 24.6 7.6 63 186-249 17-79 (169)
294 cd04443 DEP_GPR155 DEP (Dishev 53.1 34 0.00075 23.5 4.4 40 152-191 25-64 (83)
295 PF07719 TPR_2: Tetratricopept 53.1 31 0.00068 18.2 3.6 27 232-258 3-29 (34)
296 PF11846 DUF3366: Domain of un 51.1 1.3E+02 0.0028 24.2 8.4 35 190-224 139-173 (193)
297 PF04053 Coatomer_WDAD: Coatom 51.1 2.1E+02 0.0046 26.7 11.6 133 92-257 297-429 (443)
298 COG1747 Uncharacterized N-term 51.1 2.3E+02 0.0049 27.1 15.2 159 121-289 62-229 (711)
299 KOG4648 Uncharacterized conser 50.5 73 0.0016 28.5 6.9 95 99-204 106-207 (536)
300 PF14669 Asp_Glu_race_2: Putat 50.1 44 0.00096 27.2 5.1 59 197-255 134-206 (233)
301 KOG2396 HAT (Half-A-TPR) repea 50.1 2.3E+02 0.005 26.9 15.2 85 191-277 455-545 (568)
302 TIGR02561 HrpB1_HrpK type III 49.7 1.2E+02 0.0027 23.6 10.4 59 141-207 29-88 (153)
303 PF13174 TPR_6: Tetratricopept 49.7 20 0.00044 18.8 2.4 24 96-119 6-29 (33)
304 cd04441 DEP_2_DEP6 DEP (Dishev 49.6 26 0.00057 24.2 3.4 38 154-191 29-66 (85)
305 PF02631 RecX: RecX family; I 49.4 1E+02 0.0022 22.6 11.1 104 141-253 11-116 (121)
306 PF02607 B12-binding_2: B12 bi 48.7 24 0.00051 23.7 3.1 40 101-140 12-51 (79)
307 smart00638 LPD_N Lipoprotein N 48.3 2.6E+02 0.0057 27.0 16.5 179 77-257 327-523 (574)
308 KOG4077 Cytochrome c oxidase, 48.0 51 0.0011 24.9 4.7 66 194-259 46-113 (149)
309 PF12796 Ank_2: Ankyrin repeat 48.0 49 0.0011 22.4 4.8 83 99-195 3-87 (89)
310 KOG4162 Predicted calmodulin-b 48.0 3E+02 0.0065 27.5 18.2 80 141-225 463-544 (799)
311 cd04448 DEP_PIKfyve DEP (Dishe 47.2 43 0.00094 22.9 4.1 38 154-191 25-62 (81)
312 KOG4334 Uncharacterized conser 46.6 12 0.00025 34.6 1.5 93 77-170 465-573 (650)
313 PF08311 Mad3_BUB1_I: Mad3/BUB 46.3 1.2E+02 0.0027 22.6 8.3 43 213-255 81-124 (126)
314 smart00544 MA3 Domain in DAP-5 46.1 1.1E+02 0.0024 22.0 9.9 26 93-118 5-30 (113)
315 cd04440 DEP_2_P-Rex DEP (Dishe 45.4 47 0.001 23.4 4.1 39 153-191 33-71 (93)
316 PHA02798 ankyrin-like protein; 44.4 2.8E+02 0.006 26.1 13.5 117 108-229 87-213 (489)
317 COG5108 RPO41 Mitochondrial DN 44.2 1.5E+02 0.0032 29.2 8.3 120 130-257 33-160 (1117)
318 PHA03100 ankyrin repeat protei 44.1 2.7E+02 0.0058 25.9 11.7 27 42-72 37-63 (480)
319 PF13525 YfiO: Outer membrane 44.1 1.7E+02 0.0038 23.7 9.2 50 175-224 20-71 (203)
320 PRK08691 DNA polymerase III su 43.8 3.1E+02 0.0068 27.4 10.7 88 176-266 180-281 (709)
321 PF12926 MOZART2: Mitotic-spin 43.7 1.1E+02 0.0024 21.3 7.5 63 194-258 9-71 (88)
322 PRK09857 putative transposase; 43.2 2.2E+02 0.0048 24.9 8.9 68 196-264 207-274 (292)
323 COG3118 Thioredoxin domain-con 42.4 2.4E+02 0.0051 24.8 8.8 112 141-259 153-265 (304)
324 cd00280 TRFH Telomeric Repeat 42.3 1.9E+02 0.004 23.5 7.6 49 175-223 84-139 (200)
325 cd04449 DEP_DEPDC5-like DEP (D 41.5 55 0.0012 22.4 4.0 41 151-191 23-64 (83)
326 KOG4648 Uncharacterized conser 41.0 86 0.0019 28.1 5.9 78 166-256 106-184 (536)
327 smart00028 TPR Tetratricopepti 40.3 41 0.00088 16.4 2.7 27 232-258 3-29 (34)
328 KOG2297 Predicted translation 40.3 2.6E+02 0.0057 24.7 10.3 148 77-250 185-341 (412)
329 PHA03100 ankyrin repeat protei 40.2 1.3E+02 0.0028 28.0 7.7 17 237-253 180-196 (480)
330 COG2137 OraA Uncharacterized p 40.0 1.9E+02 0.0042 23.1 12.6 111 141-258 54-166 (174)
331 cd04442 DEP_1_DEP6 DEP (Dishev 39.6 52 0.0011 22.6 3.6 38 154-191 25-62 (82)
332 COG5108 RPO41 Mitochondrial DN 39.4 1.1E+02 0.0024 30.1 6.7 22 95-116 33-54 (1117)
333 PRK10866 outer membrane biogen 38.9 2.4E+02 0.0052 23.8 17.9 157 44-222 39-239 (243)
334 PF09454 Vps23_core: Vps23 cor 38.8 84 0.0018 20.5 4.3 50 154-207 5-54 (65)
335 PLN03192 Voltage-dependent pot 38.8 3.9E+02 0.0084 27.3 11.2 114 129-255 527-644 (823)
336 cd07153 Fur_like Ferric uptake 38.8 71 0.0015 23.1 4.6 49 200-248 5-53 (116)
337 COG2405 Predicted nucleic acid 38.4 60 0.0013 24.8 3.9 38 201-238 115-152 (157)
338 TIGR03581 EF_0839 conserved hy 38.0 1E+02 0.0023 25.5 5.6 83 175-257 136-235 (236)
339 PRK09462 fur ferric uptake reg 37.9 1.8E+02 0.004 22.2 7.3 63 185-248 7-70 (148)
340 PHA02989 ankyrin repeat protei 37.7 2.3E+02 0.005 26.7 8.9 19 141-159 87-105 (494)
341 PF09797 NatB_MDM20: N-acetylt 37.3 2.4E+02 0.0052 25.4 8.6 108 141-254 202-310 (365)
342 KOG4567 GTPase-activating prot 37.2 1.9E+02 0.0041 25.6 7.2 58 179-241 262-319 (370)
343 PF13934 ELYS: Nuclear pore co 37.0 2.5E+02 0.0054 23.5 12.4 146 149-309 71-217 (226)
344 PF11817 Foie-gras_1: Foie gra 36.8 2.1E+02 0.0046 24.2 7.7 57 200-256 183-244 (247)
345 KOG4555 TPR repeat-containing 36.6 1.9E+02 0.0042 22.1 9.5 91 166-260 52-145 (175)
346 KOG1920 IkappaB kinase complex 36.4 5.5E+02 0.012 27.3 14.4 23 235-257 1004-1026(1265)
347 PHA02989 ankyrin repeat protei 36.3 3.4E+02 0.0073 25.6 9.8 129 108-241 86-226 (494)
348 KOG4567 GTPase-activating prot 36.2 2E+02 0.0044 25.4 7.2 59 141-207 262-320 (370)
349 COG4455 ImpE Protein of avirul 36.0 2.4E+02 0.0052 23.8 7.3 24 157-183 35-58 (273)
350 PF09454 Vps23_core: Vps23 cor 35.4 71 0.0015 20.8 3.5 52 191-243 4-55 (65)
351 PF09868 DUF2095: Uncharacteri 35.3 1.3E+02 0.0028 22.2 5.0 20 206-225 72-91 (128)
352 COG3947 Response regulator con 35.1 2.9E+02 0.0063 24.3 8.0 61 196-257 280-340 (361)
353 PF04097 Nic96: Nup93/Nic96; 34.5 2.6E+02 0.0055 27.5 8.8 160 95-258 263-442 (613)
354 PF03745 DUF309: Domain of unk 34.4 1.1E+02 0.0024 19.7 4.3 49 205-253 9-62 (62)
355 cd08819 CARD_MDA5_2 Caspase ac 34.2 1.6E+02 0.0035 20.5 7.1 37 207-248 48-84 (88)
356 KOG0687 26S proteasome regulat 34.0 3.5E+02 0.0075 24.2 11.6 99 156-259 103-210 (393)
357 PHA02875 ankyrin repeat protei 33.8 2E+02 0.0042 26.3 7.7 102 142-254 15-123 (413)
358 KOG2062 26S proteasome regulat 33.6 2.6E+02 0.0057 28.0 8.2 151 98-259 67-239 (929)
359 PF01475 FUR: Ferric uptake re 33.3 71 0.0015 23.4 3.8 49 200-248 12-60 (120)
360 PF08311 Mad3_BUB1_I: Mad3/BUB 33.1 1.5E+02 0.0032 22.2 5.5 44 177-220 80-124 (126)
361 KOG2908 26S proteasome regulat 33.1 2.4E+02 0.0053 25.2 7.4 96 37-147 75-179 (380)
362 PF02847 MA3: MA3 domain; Int 32.9 1.2E+02 0.0026 21.7 5.0 60 161-225 6-67 (113)
363 PF13934 ELYS: Nuclear pore co 32.7 2.9E+02 0.0064 23.0 9.1 103 190-304 74-179 (226)
364 COG4105 ComL DNA uptake lipopr 32.3 3.2E+02 0.007 23.3 16.1 164 92-258 37-232 (254)
365 PF07079 DUF1347: Protein of u 31.1 4.6E+02 0.0099 24.7 12.0 142 47-208 16-180 (549)
366 cd04438 DEP_dishevelled DEP (D 30.8 1E+02 0.0022 21.2 4.0 38 154-191 26-64 (84)
367 cd04450 DEP_RGS7-like DEP (Dis 30.5 95 0.0021 21.5 3.8 39 153-191 24-62 (88)
368 smart00049 DEP Domain found in 30.2 89 0.0019 20.7 3.6 39 153-191 16-54 (77)
369 COG0735 Fur Fe2+/Zn2+ uptake r 29.9 2.6E+02 0.0056 21.5 7.4 63 143-209 7-69 (145)
370 PF08564 CDC37_C: Cdc37 C term 29.3 95 0.0021 22.2 3.6 39 271-309 27-65 (99)
371 KOG2063 Vacuolar assembly/sort 29.1 3.7E+02 0.008 27.6 8.8 114 92-208 506-639 (877)
372 TIGR02677 conserved hypothetic 29.1 5.1E+02 0.011 24.7 10.1 59 82-140 3-65 (494)
373 KOG1550 Extracellular protein 28.7 5.4E+02 0.012 24.8 13.9 152 100-260 259-427 (552)
374 PF12862 Apc5: Anaphase-promot 28.7 2E+02 0.0044 19.9 5.7 21 237-257 48-68 (94)
375 PF13512 TPR_18: Tetratricopep 28.1 2.8E+02 0.0061 21.3 8.6 76 49-140 22-97 (142)
376 PRK07003 DNA polymerase III su 28.1 6.6E+02 0.014 25.6 10.3 86 176-264 180-279 (830)
377 PF11491 DUF3213: Protein of u 28.0 51 0.0011 22.5 1.9 34 119-152 18-60 (88)
378 COG1466 HolA DNA polymerase II 27.9 3.6E+02 0.0078 24.0 8.0 92 216-310 148-241 (334)
379 COG5159 RPN6 26S proteasome re 27.8 4.2E+02 0.0092 23.3 10.3 124 96-221 9-151 (421)
380 PHA02859 ankyrin repeat protei 27.8 2.2E+02 0.0047 23.2 6.2 139 97-249 25-175 (209)
381 PRK14951 DNA polymerase III su 27.3 6.1E+02 0.013 25.0 10.8 88 176-266 185-286 (618)
382 COG3947 Response regulator con 27.2 4.4E+02 0.0095 23.3 14.5 46 232-277 281-328 (361)
383 cd04371 DEP DEP domain, named 27.2 1E+02 0.0022 20.5 3.6 38 154-191 25-62 (81)
384 COG4003 Uncharacterized protei 26.9 1.9E+02 0.0041 19.9 4.4 25 236-260 37-61 (98)
385 PF11838 ERAP1_C: ERAP1-like C 26.6 4.3E+02 0.0092 22.9 18.7 169 77-255 58-262 (324)
386 PRK10304 ferritin; Provisional 26.6 3.2E+02 0.007 21.5 6.7 17 107-123 52-68 (165)
387 smart00804 TAP_C C-terminal do 26.4 1.3E+02 0.0028 19.5 3.6 23 171-194 37-60 (63)
388 PF12926 MOZART2: Mitotic-spin 26.2 2.3E+02 0.005 19.7 7.0 43 143-188 29-71 (88)
389 KOG4555 TPR repeat-containing 26.2 2.7E+02 0.0058 21.4 5.6 55 204-259 52-106 (175)
390 PF14162 YozD: YozD-like prote 26.2 71 0.0015 19.6 2.1 20 293-312 11-30 (57)
391 COG4455 ImpE Protein of avirul 26.1 2.9E+02 0.0063 23.3 6.3 77 159-239 3-81 (273)
392 PF04090 RNA_pol_I_TF: RNA pol 26.0 2.9E+02 0.0062 22.7 6.3 59 197-256 43-102 (199)
393 COG4003 Uncharacterized protei 26.0 84 0.0018 21.5 2.7 27 42-68 36-62 (98)
394 cd07153 Fur_like Ferric uptake 25.8 1E+02 0.0023 22.2 3.6 25 97-121 7-31 (116)
395 PF14669 Asp_Glu_race_2: Putat 25.7 1.9E+02 0.0042 23.6 5.1 58 160-220 135-206 (233)
396 TIGR00321 dhys deoxyhypusine s 25.5 53 0.0011 28.8 2.2 28 231-258 11-42 (301)
397 KOG3636 Uncharacterized conser 25.5 5.6E+02 0.012 24.0 8.5 37 223-259 176-212 (669)
398 PRK02492 deoxyhypusine synthas 25.3 73 0.0016 28.6 3.0 29 230-258 23-55 (347)
399 cd00280 TRFH Telomeric Repeat 25.0 1.6E+02 0.0035 23.9 4.6 61 77-140 87-158 (200)
400 PF07575 Nucleopor_Nup85: Nup8 25.0 2.1E+02 0.0046 27.7 6.4 65 193-259 403-467 (566)
401 PF07443 HARP: HepA-related pr 24.7 23 0.0005 22.2 -0.1 31 176-206 8-38 (55)
402 PF09868 DUF2095: Uncharacteri 24.5 85 0.0018 23.1 2.7 26 42-67 66-91 (128)
403 KOG0037 Ca2+-binding protein, 24.5 4.2E+02 0.009 22.1 13.1 76 87-171 90-173 (221)
404 PF14853 Fis1_TPR_C: Fis1 C-te 24.3 1.7E+02 0.0036 18.1 3.7 33 98-132 9-41 (53)
405 KOG0624 dsRNA-activated protei 24.3 5.4E+02 0.012 23.3 16.4 207 47-259 116-370 (504)
406 smart00164 TBC Domain in Tre-2 24.1 2.3E+02 0.005 22.6 5.7 36 189-224 161-196 (199)
407 PF10345 Cohesin_load: Cohesin 24.0 6.9E+02 0.015 24.4 11.9 127 94-222 104-252 (608)
408 PRK06305 DNA polymerase III su 23.9 6.1E+02 0.013 23.8 11.2 87 176-266 182-283 (451)
409 KOG0543 FKBP-type peptidyl-pro 23.6 5.8E+02 0.013 23.4 10.2 137 99-259 217-355 (397)
410 PLN03192 Voltage-dependent pot 23.5 6.2E+02 0.014 25.8 9.7 145 94-255 527-677 (823)
411 cd08315 Death_TRAILR_DR4_DR5 D 23.4 2.8E+02 0.006 19.6 5.4 31 195-225 64-94 (96)
412 cd07229 Pat_TGL3_like Triacylg 23.3 5.2E+02 0.011 23.8 8.1 102 143-252 100-208 (391)
413 PF02631 RecX: RecX family; I 23.0 3.1E+02 0.0067 20.0 9.9 96 106-209 8-106 (121)
414 KOG1550 Extracellular protein 22.7 7E+02 0.015 24.1 12.9 118 141-263 231-361 (552)
415 PRK15180 Vi polysaccharide bio 22.6 6.5E+02 0.014 24.0 8.4 110 141-257 309-418 (831)
416 PF02607 B12-binding_2: B12 bi 22.3 96 0.0021 20.6 2.6 30 209-238 15-44 (79)
417 TIGR02508 type_III_yscG type I 22.0 3.2E+02 0.0069 19.8 8.3 62 203-271 47-108 (115)
418 PLN03025 replication factor C 22.0 5.5E+02 0.012 22.6 11.3 77 149-231 172-260 (319)
419 KOG0989 Replication factor C, 22.0 5.7E+02 0.012 22.8 8.5 48 189-238 204-251 (346)
420 COG5210 GTPase-activating prot 21.7 2.5E+02 0.0055 26.6 6.1 45 216-260 363-407 (496)
421 PRK14136 recX recombination re 21.6 5.7E+02 0.012 22.6 12.1 142 88-256 160-302 (309)
422 PRK14135 recX recombination re 21.4 5.1E+02 0.011 22.0 13.9 111 141-257 91-203 (263)
423 KOG0159 Cytochrome P450 CYP11/ 21.4 7.3E+02 0.016 23.8 8.8 47 175-223 313-359 (519)
424 PRK14951 DNA polymerase III su 21.3 8E+02 0.017 24.2 9.9 75 149-229 197-284 (618)
425 PF08631 SPO22: Meiosis protei 21.0 5.4E+02 0.012 22.1 17.7 161 91-255 85-271 (278)
426 PF07575 Nucleopor_Nup85: Nup8 20.9 1E+02 0.0022 29.9 3.3 40 77-116 392-431 (566)
427 COG4865 Glutamate mutase epsil 20.9 5.3E+02 0.012 23.2 7.2 83 167-259 24-117 (485)
428 PRK07764 DNA polymerase III su 20.7 7.2E+02 0.016 25.5 9.3 28 200-228 253-280 (824)
429 PRK07764 DNA polymerase III su 20.5 8.5E+02 0.018 25.0 9.7 85 176-263 181-280 (824)
430 COG0819 TenA Putative transcri 20.4 5.1E+02 0.011 21.6 7.8 25 147-171 99-123 (218)
431 PRK07914 hypothetical protein; 20.4 5.9E+02 0.013 22.4 8.5 32 187-220 142-173 (320)
432 KOG2908 26S proteasome regulat 20.3 6.4E+02 0.014 22.7 9.7 85 163-250 81-177 (380)
433 PF07163 Pex26: Pex26 protein; 20.2 5.9E+02 0.013 22.3 9.7 10 209-218 172-181 (309)
434 PF14744 WASH-7_mid: WASH comp 20.1 1.9E+02 0.0042 25.9 4.5 129 96-226 162-330 (350)
435 cd08787 CARD_NOD2_1_CARD15 Cas 20.1 1.4E+02 0.0031 20.4 2.9 30 41-70 6-35 (87)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-47 Score=374.66 Aligned_cols=294 Identities=12% Similarity=0.117 Sum_probs=238.8
Q ss_pred cccCCCCCcccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---------ccch----hHHHhcccCC----CC
Q 040801 26 LDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQIS----NP 88 (323)
Q Consensus 26 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---------y~~~----~a~~lf~~m~----~~ 88 (323)
+..+..+..|+..+|+.++.+|++.|+++.|.++|++|.+.|+.|+. |+++ .|.++|++|. .|
T Consensus 426 l~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 426 FRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 33344455588888999999999999999999999999999888887 5555 8888888887 68
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHH--cCCCCchHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK--FGLASDSFLHNTL 163 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~--~g~~~~~~~~~~l 163 (323)
|..+||+||.+|++.|++++|+++|++|++.|+.||..||+.||.+|++.|+ |.+++++|.+ .|+.||.++|++|
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 8888999999999999999999999999888888998899999999888888 8888888875 5788888888888
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 243 (323)
|++|++.| ++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||++|++.
T Consensus 586 I~ay~k~G---~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 586 MKACANAG---QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHCC---CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 88888888 557888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHhccCCCCchhhhHHHhhhccCCCCCcchhhhhhhCCCC------c-----------------hhHHHHH
Q 040801 244 KFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCP------K-----------------KAHKLFF 300 (323)
Q Consensus 244 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~------~-----------------~~~~~~~ 300 (323)
|++++|.++|++|.+.|..|+..+|...+..+++.|+.++|..++..+. + +.+..+|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888887777777777777777777777777766654331 1 1356667
Q ss_pred HHHHhccCCCCeeeeecccccc
Q 040801 301 FSMLKKVHVPGVLIQVHVPDVL 322 (323)
Q Consensus 301 ~~M~~~g~~p~~~t~~~li~~l 322 (323)
++|.+.|+.||..||+++|.++
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888888877543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-47 Score=372.72 Aligned_cols=286 Identities=11% Similarity=0.120 Sum_probs=193.1
Q ss_pred cccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---------ccch----hHHHhcccCC------CCChhhHH
Q 040801 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQIS------NPTIYTCN 94 (323)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---------y~~~----~a~~lf~~m~------~~~~~~~~ 94 (323)
.|+..+|+++|.+|++.|++++|..+|++|.+.|+.|+. |++. .|.++|++|. .||..+|+
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyn 583 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 456666666666666666666666666666666666665 3333 6666666663 46666677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
+||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|+ |.++|++|.+.|+.||..+|++||++|++.|
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 7777777777777777777777666777777777777777777666 6677777777777777777777777777766
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHH
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
+.++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+
T Consensus 664 ---~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 664 ---DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhccCCCCchhhhHHHhhhccCCCCCcchhhhhhhCCCCc--------------------------------------
Q 040801 252 LFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK-------------------------------------- 293 (323)
Q Consensus 252 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~-------------------------------------- 293 (323)
+|++|.+.|..|+..+|...+..+++.|+.++|.++++.+..
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 777777666677776666666666666666666544222110
Q ss_pred --------hhHHHHHHHHHhccCCCCeeeeecccccc
Q 040801 294 --------KAHKLFFFSMLKKVHVPGVLIQVHVPDVL 322 (323)
Q Consensus 294 --------~~~~~~~~~M~~~g~~p~~~t~~~li~~l 322 (323)
..+..+|++|+++|+.||..||+.+|.++
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 12345667777778778877777777543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-44 Score=357.58 Aligned_cols=247 Identities=22% Similarity=0.329 Sum_probs=224.0
Q ss_pred cccccCCCCCccccccCCCCCcccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------------------
Q 040801 13 TPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------------------- 72 (323)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-------------------- 72 (323)
+......+....++..+..+..|+..+|+++|.++++.|++++|..+|++|.+.|+.|+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 333344455555667777788888899999999999999999999999999888888773
Q ss_pred ------------------------ccch----hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 040801 73 ------------------------CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD 124 (323)
Q Consensus 73 ------------------------y~~~----~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 124 (323)
|+++ .|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 4444 899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC---------------------------
Q 040801 125 RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------------------------- 174 (323)
Q Consensus 125 ~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------------------------- 174 (323)
..||+.+|.+|++.|+ +.+++..|.+.|+.||..+||+||++|+++|+++
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 9999999999999999 9999999999999999999999999999988765
Q ss_pred -ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 175 -QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 175 -~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCC
Q 040801 254 VKMLFP 259 (323)
Q Consensus 254 ~~m~~~ 259 (323)
++|.++
T Consensus 448 ~~m~~~ 453 (857)
T PLN03077 448 HNIPEK 453 (857)
T ss_pred HhCCCC
Confidence 999876
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=349.66 Aligned_cols=285 Identities=21% Similarity=0.288 Sum_probs=235.1
Q ss_pred cccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---------ccch----hHHHhcccCCCCChhhHHHHHHHH
Q 040801 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQISNPTIYTCNSIVRGY 100 (323)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---------y~~~----~a~~lf~~m~~~~~~~~~~li~~~ 100 (323)
.|+..+|++++.+|++.++++.+.+++..|.+.|+.|+. |+++ .|.++|++|+.||.++||++|.+|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 568889999999999999999999999999999999988 6666 999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC---
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--- 174 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--- 174 (323)
++.|++++|+++|++|.+.|+.||..||+.++++|++.|. +.+++..+.+.|+.||..+||+||++|+++|+++
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999988888888887777776 7777777777777666666666666666666543
Q ss_pred -------------------------ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 175 -------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 175 -------------------------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
+.++|+++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 6788999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCCCCCcchhhhhhhCCCCc----------------
Q 040801 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK---------------- 293 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~---------------- 293 (323)
..+|++||++|+++|++++|.++|++|.++ +...| ...+..+++.|+.++|..+++.+..
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d~~t~--n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPRK--NLISW--NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCCC--CeeeH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999864 34444 4444445555566666655443321
Q ss_pred -------hhHHHHHHHHHh-ccCCCCeeeeecccccc
Q 040801 294 -------KAHKLFFFSMLK-KVHVPGVLIQVHVPDVL 322 (323)
Q Consensus 294 -------~~~~~~~~~M~~-~g~~p~~~t~~~li~~l 322 (323)
+.+..+|++|.+ .|+.|+..+|+.+|++|
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 136667788875 47778888888887765
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=348.77 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=257.5
Q ss_pred CCCCCcccccccccCCCCCccccccCCCCCcccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-----------
Q 040801 4 PLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------- 72 (323)
Q Consensus 4 p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------- 72 (323)
|++..++..+......+....+...+..+..|+..+|++++.++++.|++++|..+|++|.+.|..|+.
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 455556666666666777777788888888899999999999999999999999999999988877763
Q ss_pred ---------------------------------ccch----hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 040801 73 ---------------------------------CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115 (323)
Q Consensus 73 ---------------------------------y~~~----~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 115 (323)
|+++ +|.++|++|+++|+++||+||.+|++.|++++|+++|++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555 899999999999999999999999999999999999999
Q ss_pred HHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC
Q 040801 116 MIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192 (323)
Q Consensus 116 m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~ 192 (323)
|.+.|+.||..||++++.+|++.|+ |.++++.|.+.|+.||..+||+||++|+++| ++++|.++|++|. +
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G---~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG---RMEDARNVFDRMP----R 388 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC---CHHHHHHHHHhCC----C
Confidence 9999999999999999999999999 9999999999999999999999999999999 6699999999995 5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC-CCCchhhhHHHhh
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF-PWNNYGQWAMSAT 271 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~~ 271 (323)
||.+|||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.|+..+|...
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 899999999999999999999999999999999999999999999999999999999999999986 4888988899999
Q ss_pred hccCCCCCcchhhhhhhCCCC
Q 040801 272 VGPQGLVGRHSTAHQISGPCP 292 (323)
Q Consensus 272 ~~~~~~~~~~~~a~~l~~~~~ 292 (323)
+..+++.|+.++|..++..++
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCC
Confidence 999999999999887766554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-42 Score=345.31 Aligned_cols=312 Identities=23% Similarity=0.258 Sum_probs=237.1
Q ss_pred CCCCCcccccccccCCCCCccccccCCCCCcccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-----------
Q 040801 4 PLPLHHQTRTPALSSDNSPLINLDNINNNNINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------- 72 (323)
Q Consensus 4 p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------- 72 (323)
|.+..++..+......+....+...+..+..++..+|+++|.++++.|++++|..+|++|.+.|+.|+.
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 334444455555555555555666666667777777777777777777777777777777777776663
Q ss_pred ---------------------------------ccch----hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 040801 73 ---------------------------------CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115 (323)
Q Consensus 73 ---------------------------------y~~~----~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 115 (323)
|+++ .|.++|++|..||.++||++|.+|++.|++++|+++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444 899999999999999999999999999999999999999
Q ss_pred HHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC------------------
Q 040801 116 MIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD------------------ 174 (323)
Q Consensus 116 m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~------------------ 174 (323)
|.+.|+.||..||+.+|.+|++.|+ +.++++.|.+.|+.|+..+||+||++|+++|+++
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 9999999999999999999999999 9999999999999999999999999999999653
Q ss_pred ----------ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 175 ----------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 175 ----------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
+.++|+++|++|.. ++.||.+||+++|.+|++.|+++.+.+++..+.+.|+.+|..++++||++|+|+|
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 34555555666653 5789999999999999999999999999999999998888888888888888888
Q ss_pred CHHHHHHHHHhccCCCCchhhh-HHHhhhccCCCCCcchhhhhhhCCCC------c-----------------hhHHHHH
Q 040801 245 FVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHSTAHQISGPCP------K-----------------KAHKLFF 300 (323)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~l~~~~~------~-----------------~~~~~~~ 300 (323)
++++|.++|++| .+ +...| +++.++. +.|+.++|..+++.+. + +.+..+|
T Consensus 539 ~~~~A~~~f~~~-~~--d~~s~n~lI~~~~---~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 539 RMNYAWNQFNSH-EK--DVVSWNILLTGYV---AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CHHHHHHHHHhc-CC--ChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 888888888887 22 44444 4444444 4444444433322111 1 1245556
Q ss_pred HHHH-hccCCCCeeeeecccccc
Q 040801 301 FSML-KKVHVPGVLIQVHVPDVL 322 (323)
Q Consensus 301 ~~M~-~~g~~p~~~t~~~li~~l 322 (323)
++|+ +.|+.|+..+|+.+++.|
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHH
Confidence 6666 456666666666666543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=4.1e-14 Score=128.91 Aligned_cols=257 Identities=11% Similarity=-0.010 Sum_probs=185.6
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC------------ccch----hHHHhcccCC---CCChhhHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADY----HVRLVFSQIS---NPTIYTCNSIV 97 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~------------y~~~----~a~~lf~~m~---~~~~~~~~~li 97 (323)
...+..+...+...|+++.|..+++.+...+..+.. |.+. .|.++|+++. ..+..+++.+.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 148 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345677888888899999999999988875432211 2222 7888888876 45678899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDR----FMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..+.+.|++++|.+.++.+.+.+-.++. ..|..+...+.+.|+ |...++.+.+.. ..+...+..+...|.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC
Confidence 9999999999999999999876533322 134455555666666 888888887754 22456778888999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 250 (323)
| ++++|.++|+++...+......+++.+..+|+..|+.++|...++.+.+. .|+...+..+...|.+.|++++|.
T Consensus 228 g---~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 228 G---DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred C---CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHH
Confidence 9 66999999999987543333567888999999999999999999998876 467777788999999999999999
Q ss_pred HHHHhccCCCCchhhhHH---HhhhccCCCCCcchhhhhhhCCCCchhHHHHHHHHHhccCCCCee
Q 040801 251 DLFVKMLFPWNNYGQWAM---SATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVL 313 (323)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~M~~~g~~p~~~ 313 (323)
.+++++.+. .|+...+ ..........|+ ..++ ...|++|.++++.|++.
T Consensus 303 ~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~-----------~~~a-~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 303 ALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR-----------AKES-LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc-----------chhH-HHHHHHHHHHHHhCCCC
Confidence 999988776 3333322 222221221223 2233 34458899888876554
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=3.5e-15 Score=93.96 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=48.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD 137 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~ 137 (323)
||+++||++|++|++.|++++|+++|++|.++|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999986
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.9e-13 Score=117.66 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=173.8
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC------------ccch---------------------------hHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------------CADY---------------------------HVR 79 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~------------y~~~---------------------------~a~ 79 (323)
+-+.|+.. -+.|...++.-+++.|...|..-+. |... ...
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44555554 4567788899999999988875555 1111 344
Q ss_pred HhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH
Q 040801 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL 159 (323)
Q Consensus 80 ~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~ 159 (323)
+++.+..+.+..+|.+||.|+|+-...++|.++|++-.....+.+..+||.+|.+-+-.. ..++..+|....+.||..|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-GKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-cHHHHHHHHHhhcCCchHh
Confidence 477777778889999999999999999999999999999999999999999987754332 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHH-HHHHHHHHH----HhCCcc----C
Q 040801 160 HNTLINMYSSCWCLD-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT-VKRVHKCVD----ESGFWS----H 229 (323)
Q Consensus 160 ~~~li~~~~~~g~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~----~~g~~p----~ 229 (323)
+|+++++.++.|.+. ....|.+++.||++-|++|...+|--+|..+++.++..+ +..+..++. -+.++| |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 999999999999553 234568899999999999999999999999999998755 444444443 233444 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...|..-++.|.+..+.+-|..+..-+...
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 556777888888999999999988776543
No 10
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=1.5e-14 Score=91.05 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 207 (323)
||+++||+||++|++.| ++++|+++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~---~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAG---KFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777766 446777777777766777777777777766664
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.2e-12 Score=114.01 Aligned_cols=192 Identities=15% Similarity=0.165 Sum_probs=138.1
Q ss_pred cccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--ccch-------hHHHhcccCC----CCChhhHHHHHHHH
Q 040801 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--CADY-------HVRLVFSQIS----NPTIYTCNSIVRGY 100 (323)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--y~~~-------~a~~lf~~m~----~~~~~~~~~li~~~ 100 (323)
.+..-++.++|.++|+....+.|.+++.+-......-+. +... .-.++..+|. .||..++|+++++.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 345568899999999999999999999988765543333 1111 2345555554 78888888888888
Q ss_pred HhCCChHH----HHHHHHHHHHCCCCCCcccHHHHHHHhcchhh----HHHHHHHH----HHcCCCC----chHHHHHHH
Q 040801 101 TNKNLHHE----AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV----EKQLHSQA----IKFGLAS----DSFLHNTLI 164 (323)
Q Consensus 101 ~~~g~~~~----A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~----a~~~~~~m----~~~g~~~----~~~~~~~li 164 (323)
.+.|+++. |++++.+|++-|+.|...+|..+|+.+++.++ +..+..++ -...++| |...|-+-|
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 88887664 46677888888888888888888888888877 33333333 3333444 334455555
Q ss_pred HHHHhcCCCC---------------------------------------ChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 040801 165 NMYSSCWCLD---------------------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205 (323)
Q Consensus 165 ~~~~~~g~~~---------------------------------------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 205 (323)
+.|.+..+.. ..+..++.++.|.-.-+-|+..+..-++++.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 5555444333 4566677777777666778999999999999
Q ss_pred hccCChHHHHHHHHHHHHhC
Q 040801 206 ARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g 225 (323)
...|.++-.-++|.+++..|
T Consensus 444 ~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhcCcchhHHHHHHHHHHhh
Confidence 99999999999999888777
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.51 E-value=2.1e-12 Score=117.64 Aligned_cols=232 Identities=10% Similarity=0.025 Sum_probs=173.1
Q ss_pred HHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC-CCC------hhhHHHHHHHHHhC
Q 040801 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS-NPT------IYTCNSIVRGYTNK 103 (323)
Q Consensus 45 ~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~-~~~------~~~~~~li~~~~~~ 103 (323)
......|+++.|...|+.+.+.+ |+. |.+. .|.++++.+. .++ ...+..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456789999999999999863 444 2221 7888887765 222 25678889999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCCCCh
Q 040801 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD----SFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~~ 176 (323)
|++++|.++|+++.+. -+++..++..+...+.+.|+ |.+.++.+.+.+-.+. ...|..+...+.+.| ++
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~ 196 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG---DL 196 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC---CH
Confidence 9999999999999875 33567889999999999998 8999999887664332 224566777888888 66
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
++|.+.|+++.... ..+...+..+...+.+.|++++|..+++++.+.+-.....+++.+..+|++.|+.++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998754 33466888888999999999999999999987643333567889999999999999999999998
Q ss_pred cCCCCchhhhHHHhhhccCCCCCcchhhh
Q 040801 257 LFPWNNYGQWAMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 285 (323)
.+.. |+...+......+.+.|+.++|.
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHH
Confidence 8752 22222223333334445555443
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.39 E-value=6e-11 Score=118.64 Aligned_cols=212 Identities=9% Similarity=-0.012 Sum_probs=128.3
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVRGY 100 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~ 100 (323)
..+..+...+.+.|+++.|..+++.+.+.. |+. |... .|.+.|+++. +.+...|..+...+
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 344556666677777777777777766532 222 1111 5666665543 33455666666777
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChH
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD 177 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 177 (323)
.+.|++++|.+.|+++.+.. +.+..++..+...+...|+ |.++++.+.+.+ ..+...+..+...+.+.| +++
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g---~~~ 720 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK---DYP 720 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC---CHH
Confidence 77777777777776665531 2335566666666666666 666666666554 334555666666666666 456
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+|.+.|+++...+ |+..++..+...+.+.|+.++|...++.+.+.. +.+...+..+...|.+.|+.++|.+.|+++.
T Consensus 721 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7777776666543 444556666666666677777666666665542 3345566666666666677777776666665
Q ss_pred CC
Q 040801 258 FP 259 (323)
Q Consensus 258 ~~ 259 (323)
+.
T Consensus 798 ~~ 799 (899)
T TIGR02917 798 KK 799 (899)
T ss_pred Hh
Confidence 44
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=3.9e-10 Score=112.81 Aligned_cols=238 Identities=12% Similarity=-0.058 Sum_probs=176.4
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVR 98 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~ 98 (323)
+...+..+...+...|+++.|...++.+.+.. |+. |.+. .|.++|+++. +.+...|..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45578888889999999999999999998764 333 2111 7888887654 456788899999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCC
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 175 (323)
.+...|++++|.++++.+.+.+ +.+...+..+...+.+.|+ |.+.++.+.+.+ |+..++..+..++.+.| +
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g---~ 751 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG---N 751 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC---C
Confidence 9999999999999999988764 4566777777777877777 888888877765 55567777888888888 5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+++|.+.++++.... ..+...+..+...|...|+.++|...++++.+.. +.+...++.+...|.+.|+ ++|...+++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 688888888887654 4567788888888888888888888888887764 4467778888888888888 778888887
Q ss_pred ccCC-CCchhhh-HHHhhhccCCCCCcchhhhhh
Q 040801 256 MLFP-WNNYGQW-AMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 256 m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~~l 287 (323)
..+. +..+..+ .+...+ ...|+.++|...
T Consensus 829 ~~~~~~~~~~~~~~~~~~~---~~~g~~~~A~~~ 859 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLL---VEKGEADRALPL 859 (899)
T ss_pred HHhhCCCCcHHHHHHHHHH---HHcCCHHHHHHH
Confidence 7654 3344444 333333 334556666443
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.11 E-value=7.1e-10 Score=104.47 Aligned_cols=208 Identities=15% Similarity=0.043 Sum_probs=150.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
.||.++|..+|.-||..|+.+.|- +|.-|+-+....+...|+.++.+....++++. .. .|...+|+.|..+
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~En-------pk-ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAEN-------PK-EPLADTYTNLLKA 92 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccC-------CC-CCchhHHHHHHHH
Confidence 788899999999999999999998 99999888888899999999999998887221 11 7899999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHH----cCCC-----------------CChHH----------HHHHHHHHh------ccC
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEI----ENVK-----------------PNAVT----------LVNVLTARA------RAR 209 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~----~g~~-----------------p~~~t----------~~~li~~~~------~~~ 209 (323)
|...|++..++.+.+.+..... .|+. ||..+ |..++.-+. ..+
T Consensus 93 yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 93 YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 9999999888888775555532 2332 22221 111111110 000
Q ss_pred -----------ChHHHHHHHHHHHHhCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCCC
Q 040801 210 -----------DLRTVKRVHKCVDESGF-WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGL 277 (323)
Q Consensus 210 -----------~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 277 (323)
+..-.+++.+..+. +. .|+..+|.+++++-..+|+++.|..++.+|+++|..+..+.+...+...+
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~- 250 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGIN- 250 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCc-
Confidence 11112233333322 22 49999999999999999999999999999999987777665555554422
Q ss_pred CCcchhhhhhhCCCCchhHHHHHHHHHhccCCCCeeeeeccc
Q 040801 278 VGRHSTAHQISGPCPKKAHKLFFFSMLKKVHVPGVLIQVHVP 319 (323)
Q Consensus 278 ~~~~~~a~~l~~~~~~~~~~~~~~~M~~~g~~p~~~t~~~li 319 (323)
...+++.+...|.+.|+.|+..||...+
T Consensus 251 --------------~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 251 --------------AAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred --------------cchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 2345677778999999999999987544
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.7e-10 Score=65.69 Aligned_cols=34 Identities=38% Similarity=0.570 Sum_probs=26.1
Q ss_pred hCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 224 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+|+.||..||++||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677778888888888888888888888877774
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=1.9e-09 Score=101.65 Aligned_cols=209 Identities=15% Similarity=0.029 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCCCCC--ccch----------hHHHhcccCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 58 QIHAQMLRTSLFFDP--CADY----------HVRLVFSQIS----NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 58 ~i~~~m~~~~~~~~~--y~~~----------~a~~lf~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
..+..+...|+.|+. |.+. .|..+|.-|. ..+...|+.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 356678889999998 3333 4555888887 456788999999999999988877
Q ss_pred CCCcccHHHHHHHhcchhh--HHHHHHH-HHH-------cCC-----------------CCchH----------HHHHHH
Q 040801 122 IPDRFMFPSLFKSCADIYV--EKQLHSQ-AIK-------FGL-----------------ASDSF----------LHNTLI 164 (323)
Q Consensus 122 ~p~~~ty~~ll~~~~~~~~--a~~~~~~-m~~-------~g~-----------------~~~~~----------~~~~li 164 (323)
.|...||+.|+.+|...|| ..+..+. |+. .|+ -||.. .|..++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999 2222222 221 121 12221 122233
Q ss_pred HHHHhcCCCC--------------ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh
Q 040801 165 NMYSSCWCLD--------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 165 ~~~~~~g~~~--------------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
....+.-... +.....++....+...-.|++.+|..++.+-..+|+++.|..++.+|++.|+..+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3332111110 22233333333222111599999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCCCCCc
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGR 280 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 280 (323)
+-|-.|+-+ .|+..-++.+++-|.+.|..|++.|+...+..+.+++.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 988888776 89999999999999999999999887777766666444
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.01 E-value=2.2e-09 Score=93.43 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=103.8
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCC------ccch--------hHHHhcccCC---CCChhhHHHHHHHHHhCCC
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP------CADY--------HVRLVFSQIS---NPTIYTCNSIVRGYTNKNL 105 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~------y~~~--------~a~~lf~~m~---~~~~~~~~~li~~~~~~g~ 105 (323)
+...+.+.|+++.|++++..-......|+. ++.. .|.+.++++. +.+...+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 455566677888888888655444322333 2211 5666666655 3355667777777 79999
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCCCChHHHHH
Q 040801 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQPDEAIK 181 (323)
Q Consensus 106 ~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~~a~~ 181 (323)
+++|.++++...+.. ++...+..++..+.+.++ +.++++.+.+.. ...+...|..+-..+.+.| +.++|++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~ 167 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG---DPDKALR 167 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC---HHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Confidence 999999998875543 556667777777777777 777777776433 4567888999999999999 7799999
Q ss_pred HHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-
Q 040801 182 IFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP- 259 (323)
Q Consensus 182 ~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 259 (323)
.+++..... | |....+.++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+.
T Consensus 168 ~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998754 5 57788899999999999999999999987765 667788899999999999999999999998764
Q ss_pred CCchhhh-HHHhhhccCCCC
Q 040801 260 WNNYGQW-AMSATVGPQGLV 278 (323)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~~~ 278 (323)
+.+|... .+..++...|+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp TT-HHHHHHHHHHHT-----
T ss_pred cccccccccccccccccccc
Confidence 3445444 677777666653
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.95 E-value=8.7e-10 Score=62.73 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 040801 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186 (323)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m 186 (323)
|+.||.++||+||++||+.| +.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G---~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAG---RVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCC---CHHHHHHHHHhC
Confidence 45555555555555555555 335555555554
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.89 E-value=4.3e-07 Score=88.16 Aligned_cols=154 Identities=13% Similarity=-0.025 Sum_probs=89.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCCh
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 176 (323)
+...|++++|.++++.+.+..-.++...+..+...+.+.|+ |...++...+.. ..+...+..+-..|...|+.
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~--- 262 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRS--- 262 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCc---
Confidence 44445555555555554433222222333333344444444 555555555443 22345556666667776743
Q ss_pred HH----HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 177 DE----AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 177 ~~----a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
++ |...|++..... ..+...+..+-..+...|++++|...+++..+.. +-+...+..+..+|.+.|++++|...
T Consensus 263 ~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 43 677777666532 2245577777777777778888877777776653 12344566667777778888888888
Q ss_pred HHhccCC
Q 040801 253 FVKMLFP 259 (323)
Q Consensus 253 ~~~m~~~ 259 (323)
++++.+.
T Consensus 341 l~~al~~ 347 (656)
T PRK15174 341 FVQLARE 347 (656)
T ss_pred HHHHHHh
Confidence 8777654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.88 E-value=5.5e-07 Score=87.43 Aligned_cols=235 Identities=12% Similarity=-0.032 Sum_probs=162.1
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYT 101 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~ 101 (323)
....+..+....|+++.|...++.+.+. .|+. |... .|.+.+++.. +.+...+..+...+.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~ 155 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV 155 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555666667789999999999998876 3444 1111 6777777654 446677888889999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHH
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
..|++++|...++.+.... |+.......+..+...|+ |..+++.+.+..-.++...+..+...+...| ++++
T Consensus 156 ~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g---~~~e 230 (656)
T PRK15174 156 LMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVG---KYQE 230 (656)
T ss_pred HCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCC---CHHH
Confidence 9999999999998876543 332222222233555666 8888888766543344455556677888888 6689
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHH----HHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT----VKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
|++.|++..... ..+...+..+-..+...|+.++ |...++...+.. +-+...+..+...+.+.|+.++|...++
T Consensus 231 A~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999988754 3356777888888999999885 788888887753 2356678888899999999999999999
Q ss_pred hccCC-CCchhhh-HHHhhhccCCCCCcchhhh
Q 040801 255 KMLFP-WNNYGQW-AMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 255 ~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~ 285 (323)
+..+. +..+..+ .+...+. ..|+.++|.
T Consensus 309 ~al~l~P~~~~a~~~La~~l~---~~G~~~eA~ 338 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALR---QVGQYTAAS 338 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHH---HCCCHHHHH
Confidence 88765 2333333 3333333 345555554
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=1.7e-06 Score=72.14 Aligned_cols=196 Identities=9% Similarity=-0.104 Sum_probs=145.2
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+..+...+...|+++.|...+++..+.. +.+...+..+-..+...|++++|.+.+++..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-------------------PDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666777788889999999998887663 3456677888888999999999999998887
Q ss_pred HCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 118 VQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLA-SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
+.. +.+...+..+-..+...|+ |.+.++...+.... .....+..+-..+...| ++++|.+.|++..... ..
T Consensus 93 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~ 167 (234)
T TIGR02521 93 TLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG---DFDKAEKYLTRALQID-PQ 167 (234)
T ss_pred hhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-cC
Confidence 653 2234556666666666666 78888887764322 23455666777788888 6689999998877643 22
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+...+..+...+...|++++|...+++..+. .+.+...+..+...+.+.|+.++|..+.+.+..
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567778888888899999999999988776 344566677788888888999999888877654
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.75 E-value=1.1e-07 Score=82.61 Aligned_cols=211 Identities=10% Similarity=-0.080 Sum_probs=107.6
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCC-CCCccch----------hHHHhcccCC--CCChhhHHHHHHHHHhCCChH
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLF-FDPCADY----------HVRLVFSQIS--NPTIYTCNSIVRGYTNKNLHH 107 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~-~~~y~~~----------~a~~lf~~m~--~~~~~~~~~li~~~~~~g~~~ 107 (323)
..+.......++++.|...++.+...+-. |..|.+. .|.+++.+.- .++...+..++..+.+.++++
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHhHHH
Confidence 34444555678999999999999877643 2221111 6666665442 566777889999999999999
Q ss_pred HHHHHHHHHHHCC-CCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHHHHHH
Q 040801 108 EAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDEAIKI 182 (323)
Q Consensus 108 ~A~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~ 182 (323)
++.++++...+.. ...+...|..+-..+.+.|+ |.+.++...+.. | |....+.++..+...| +.+++.++
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~---~~~~~~~~ 202 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMG---DYDEAREA 202 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCC---ChHHHHHH
Confidence 9999999987543 45677778888888888888 999999888865 6 4778899999999988 66888888
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 183 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
++...... ..|...+..+-.++...|+.++|...++...+.. +.|......+.+++...|+.++|.++.++.-+
T Consensus 203 l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 203 LKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 88877654 5677788899999999999999999999988753 34788888999999999999999999887643
No 24
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.72 E-value=2.6e-08 Score=57.08 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 125 (323)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.66 E-value=4.1e-06 Score=69.75 Aligned_cols=165 Identities=11% Similarity=0.025 Sum_probs=131.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLIN 165 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~ 165 (323)
....+..+-..+...|++++|.+.+++..+.. +-+...+..+-..+...|+ |.+.++...+.. ..+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567888899999999999999999987652 2335666777777777777 888888887765 234567888888
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
.|...| ++++|.+.|++...... ......+..+-..+...|+.++|...+++..+.. +.+...+..+...+.+.|
T Consensus 108 ~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQG---KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcc---cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 999999 66999999999886432 2244567778888999999999999999988763 224667888999999999
Q ss_pred CHHHHHHHHHhccCC
Q 040801 245 FVSRAWDLFVKMLFP 259 (323)
Q Consensus 245 ~~~~a~~~~~~m~~~ 259 (323)
+.++|...+++..+.
T Consensus 184 ~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 184 QYKDARAYLERYQQT 198 (234)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.61 E-value=1.2e-05 Score=77.99 Aligned_cols=232 Identities=9% Similarity=-0.125 Sum_probs=144.6
Q ss_pred hcCCCchHHHHHHHHHHHhc-CCCCC----------cc-ch---hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHH
Q 040801 48 EKCSTMRELKQIHAQMLRTS-LFFDP----------CA-DY---HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEA 109 (323)
Q Consensus 48 ~~~~~~~~a~~i~~~m~~~~-~~~~~----------y~-~~---~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A 109 (323)
...+++++|...|+...+.+ ..|.. |. .. .|.+.|++.. +.+...|..+-..+...|++++|
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 44567888888888887765 23333 11 11 6666666543 33455777777788888888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 040801 110 FLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186 (323)
Q Consensus 110 ~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m 186 (323)
.+.|++..+.. +-+..+|..+-..+...|+ |...++...+.. ..+...+..+-..+.+.| ++++|+..|++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g---~~~eA~~~~~~a 459 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG---SIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 88888876642 2234666666666777777 777777776654 224566777777788888 568888888887
Q ss_pred HHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh------hHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 040801 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE------LKTTLMDAYCKCKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 187 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 260 (323)
.... .-+...|+.+-..+...|++++|...++...+..-..+.. .++.....|...|++++|.+++++..+.
T Consensus 460 l~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l- 537 (615)
T TIGR00990 460 KKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII- 537 (615)
T ss_pred HHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Confidence 6532 2346677778888888888888888888877643111111 1222222344468888888888886543
Q ss_pred Cchhhh-HHHhhhccCCCCCcchhhhhh
Q 040801 261 NNYGQW-AMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~~~~a~~l 287 (323)
+|... .+...-..+...|+.++|...
T Consensus 538 -~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 538 -DPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred -CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 22222 233333333444555555433
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.59 E-value=9e-08 Score=54.50 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP 123 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 123 (323)
+.+||.+|++|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.48 E-value=4.5e-05 Score=76.81 Aligned_cols=209 Identities=7% Similarity=-0.109 Sum_probs=145.8
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-------cc---c--h-hHHHhcccCC--CCChhhHHHHHHHHHhC
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------CA---D--Y-HVRLVFSQIS--NPTIYTCNSIVRGYTNK 103 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-------y~---~--~-~a~~lf~~m~--~~~~~~~~~li~~~~~~ 103 (323)
.+..+-..+.. +++++|...+....... |+. +. . . .|...|+++. .++...+..+-..+.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 44555555555 78888999888777653 444 11 1 1 6777776554 34445566667778888
Q ss_pred CChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHH
Q 040801 104 NLHHEAFLFYHEMIVQGLIPDR-FMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a 179 (323)
|++++|.+.|++..+.. |+. ..+..+.......|+ |...++...+.. |+...|..+-..+.+.| +.++|
T Consensus 556 Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG---~~deA 628 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRH---NVPAA 628 (987)
T ss_pred CCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCC---CHHHH
Confidence 99999999998887653 333 222222233322244 888888777654 66778888888888988 66899
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
++.|++..... .-+...++.+-..+...|+.++|...++...+.. +-+...+..+-.+|.+.|++++|...+++..+.
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99998887754 2345667777778888999999999988887753 224667788888899999999999999887654
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.48 E-value=4.7e-05 Score=73.77 Aligned_cols=211 Identities=11% Similarity=-0.114 Sum_probs=155.0
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVRGY 100 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~ 100 (323)
..+..+-..+...|+++.|...++...+. .|+. |... .|.+.|++.. +.+...|..+-..+
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34566666677889999999999998865 3443 1111 6777777553 45678899999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCCh
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 176 (323)
...|++++|.+.|++..+. .| +...+..+-..+.+.|+ |...++...+.. ..+...|+.+-..+...| ++
T Consensus 410 ~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g---~~ 483 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN---KF 483 (615)
T ss_pred HHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc---CH
Confidence 9999999999999998764 34 34556666666666776 888888877643 234678889999999999 67
Q ss_pred HHHHHHHHHHHHcCCCC-----ChH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHH
Q 040801 177 DEAIKIFYRMEIENVKP-----NAV-TLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p-----~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a 249 (323)
++|++.|++-....-.. +.. .++..+..+-..|++++|..++++..+.. |+ ...+..+...|.+.|++++|
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999977643111 111 12222223334699999999999987764 43 45688999999999999999
Q ss_pred HHHHHhccC
Q 040801 250 WDLFVKMLF 258 (323)
Q Consensus 250 ~~~~~~m~~ 258 (323)
.+.|++..+
T Consensus 562 i~~~e~A~~ 570 (615)
T TIGR00990 562 LKLFERAAE 570 (615)
T ss_pred HHHHHHHHH
Confidence 999998754
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.47 E-value=3.9e-05 Score=70.21 Aligned_cols=227 Identities=10% Similarity=-0.045 Sum_probs=149.6
Q ss_pred hcCCCchHHHHHHHHHHHhcCCCCCc---------cch----hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHH
Q 040801 48 EKCSTMRELKQIHAQMLRTSLFFDPC---------ADY----HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFL 111 (323)
Q Consensus 48 ~~~~~~~~a~~i~~~m~~~~~~~~~y---------~~~----~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 111 (323)
.+.|+++.|...+.++.+..-.+..+ -.. .|.+.++++. +.+......+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 66788888988888887643222211 111 6667766655 5567778888999999999999999
Q ss_pred HHHHHHHCCCCCCc-------ccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHH
Q 040801 112 FYHEMIVQGLIPDR-------FMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181 (323)
Q Consensus 112 ~~~~m~~~g~~p~~-------~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~ 181 (323)
++..+.+.+..++. .+|..++....+..+ ..++++.+.+. ...+......+...+...| +.++|.+
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g---~~~~A~~ 284 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECD---DHDTAQQ 284 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 99999887655322 123333333222222 44444444221 2446777888999999999 6699999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCC
Q 040801 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261 (323)
Q Consensus 182 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 261 (323)
++++.... .||... .++.+.+..++.+++....+...+.. +-|.....++-..+.+.|++++|.+.|+...+...
T Consensus 285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99888763 444422 24455556689999999998887652 23455677888999999999999999999987632
Q ss_pred chhh-hHHHhhhccCCCCCcchhhhh
Q 040801 262 NYGQ-WAMSATVGPQGLVGRHSTAHQ 286 (323)
Q Consensus 262 ~~~~-~~~~~~~~~~~~~~~~~~a~~ 286 (323)
+... ..+...+.. .|+.++|..
T Consensus 360 ~~~~~~~La~~~~~---~g~~~~A~~ 382 (398)
T PRK10747 360 DAYDYAWLADALDR---LHKPEEAAA 382 (398)
T ss_pred CHHHHHHHHHHHHH---cCCHHHHHH
Confidence 2222 244444444 445555543
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.46 E-value=6.9e-05 Score=75.49 Aligned_cols=192 Identities=10% Similarity=-0.024 Sum_probs=136.3
Q ss_pred hHHHhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHc
Q 040801 77 HVRLVFSQIS--NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF 151 (323)
Q Consensus 77 ~a~~lf~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~ 151 (323)
+|...|.+-. .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+ |...++...+.
T Consensus 494 eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666554433 455433333344446899999999999997554 4555556566666777777 88888888876
Q ss_pred CCCCch-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh
Q 040801 152 GLASDS-FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 152 g~~~~~-~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
+ |+. ..+..+...+.+.| ++++|...+++..+ ..|+...|..+-..+.+.|+.++|...++...+.. +-+.
T Consensus 572 ~--P~~~~l~~~La~~l~~~G---r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~ 643 (987)
T PRK09782 572 G--LGDNALYWWLHAQRYIPG---QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNS 643 (987)
T ss_pred C--CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5 433 33333333444557 67999999999876 45788899999999999999999999999998873 2245
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLV 278 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~ 278 (323)
..++.+-..+...|+.++|...+++..+. +..+..+ ....++...|+.
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 66777778999999999999999988764 4444444 555566555543
No 32
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=3.2e-07 Score=52.42 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 194 (323)
+||++|++|++.| ++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~---~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAG---RVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCC
Confidence 4555555555555 33555555555555555554
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.41 E-value=4.8e-05 Score=78.95 Aligned_cols=205 Identities=9% Similarity=-0.003 Sum_probs=134.9
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHHHHHhCC
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYTNKN 104 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~~~g 104 (323)
.+...+...|++++|.+.+++..+.. |+. |.+. +|.+.|++.. +.+...+-.+-..+...+
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence 34455667899999999999988763 443 2111 6666666543 223333433444556677
Q ss_pred ChHHHHHHHHHHHHCCCCCCccc---------HHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 040801 105 LHHEAFLFYHEMIVQGLIPDRFM---------FPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 105 ~~~~A~~~~~~m~~~g~~p~~~t---------y~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 172 (323)
+.++|++.++.+......++... +..+...+...|+ |.++++ . ...+...+..+-..|.+.|
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g- 617 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRG- 617 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcC-
Confidence 78888777776543322222111 1122334444555 444444 1 2344556777888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHH
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
+.++|++.|++..... ..+...+..+...+...|+.++|...++.+.+. .| +...+..+..++.+.|+.++|.+
T Consensus 618 --~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 618 --DYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred --CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 6689999999888754 336778888999999999999999999977654 34 34556667778889999999999
Q ss_pred HHHhccCC
Q 040801 252 LFVKMLFP 259 (323)
Q Consensus 252 ~~~~m~~~ 259 (323)
+++++...
T Consensus 693 ~~~~al~~ 700 (1157)
T PRK11447 693 TFNRLIPQ 700 (1157)
T ss_pred HHHHHhhh
Confidence 99988764
No 34
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.41 E-value=3.6e-07 Score=50.70 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 35
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.37 E-value=6.9e-07 Score=50.74 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 197 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
||+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=0.00014 Score=66.90 Aligned_cols=234 Identities=11% Similarity=-0.026 Sum_probs=149.9
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhcCCCCC-----ccch--------hHHHhcccCC---CCChhhHHHHHHHHHhCCChH
Q 040801 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDP-----CADY--------HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHH 107 (323)
Q Consensus 44 i~~~~~~~~~~~a~~i~~~m~~~~~~~~~-----y~~~--------~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~ 107 (323)
..+....|+++.|...+....+..-.+.. +++. .|.+.++++. +.+......+...+...|+++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 34455668999999999988765422221 2221 6777777765 456778889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHh---cchhh---HHHHHHHHHHcC---CCCchHHHHHHHHHHHhcCCCCChHH
Q 040801 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSC---ADIYV---EKQLHSQAIKFG---LASDSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 108 ~A~~~~~~m~~~g~~p~~~ty~~ll~~~---~~~~~---a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
+|.+++....+.++.+....-..-..++ ...+. +.+.+..+.+.. ...+...+-.+...+...| +.++
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g---~~~~ 281 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD---DHDS 281 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC---ChHH
Confidence 9999999999987643332212222222 11111 223333433332 1137788899999999999 6699
Q ss_pred HHHHHHHHHHcCCCCChHH---HHHHHHHHhccCChHHHHHHHHHHHHhCCccCh---hhHHHHHHHHHhcCCHHHHHHH
Q 040801 179 AIKIFYRMEIENVKPNAVT---LVNVLTARARARDLRTVKRVHKCVDESGFWSHV---ELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~ 252 (323)
|.+++++..... ||... .....-.....++.+.+...++...+. .|+. ....++-..+.+.|++++|.+.
T Consensus 282 A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 282 AQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 999999988754 44432 122222234457888888888887654 4544 4556788889999999999999
Q ss_pred HHh--ccCC-CCchhhhHHHhhhccCCCCCcchhhhhh
Q 040801 253 FVK--MLFP-WNNYGQWAMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 253 ~~~--m~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~l 287 (323)
|+. ..+. +...+...+...+...| +.++|..+
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g---~~~~A~~~ 392 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAG---DKAEAAAM 392 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 994 4333 32333335555555544 45555443
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.30 E-value=0.00013 Score=72.04 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CccChhhHHHHHHHHHhcCCHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-----FWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
++.++++.|+.+...|.+.-..+--.+..+|...++.++|+.++..+.... ..++......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 678999999999988866455577789999999999999999999986542 223444467899999999999999
Q ss_pred HHHHHhccCC
Q 040801 250 WDLFVKMLFP 259 (323)
Q Consensus 250 ~~~~~~m~~~ 259 (323)
..+++++.+.
T Consensus 387 ~~~l~~~~~~ 396 (822)
T PRK14574 387 YQFAVNYSEQ 396 (822)
T ss_pred HHHHHHHHhc
Confidence 9999999873
No 38
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.30 E-value=4.8e-06 Score=60.06 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHhcchhh-----------HHHHHHHHHHcCCCCchHHHH
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYV-----------EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~~~-----------a~~~~~~m~~~g~~~~~~~~~ 161 (323)
...|..+...+++.....+|..++++|+ .|+..+|+.+|++.++..- ...++++|...+++|+..+||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 8999999999998886543 666777777777777777777
Q ss_pred HHHHHHHh
Q 040801 162 TLINMYSS 169 (323)
Q Consensus 162 ~li~~~~~ 169 (323)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776655
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.28 E-value=0.00019 Score=74.52 Aligned_cols=209 Identities=8% Similarity=-0.035 Sum_probs=154.9
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----ccch----------hHHHhcccCCCC----Ch---------
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----CADY----------HVRLVFSQISNP----TI--------- 90 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----y~~~----------~a~~lf~~m~~~----~~--------- 90 (323)
..+..+...+.+.|+++.|...++...+. .|+. |... +|.+.++.++.. +.
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 34566778889999999999999998864 3433 2211 788888877621 11
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
..+..+...+...|+.++|.++++. .+.+...+..+-..+.+.|+ |.+.++...+.. ..+...+..+...|
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1123456678899999999999872 34455566667777777777 889999888764 23578899999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc--c---ChhhHHHHHHHHHh
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW--S---HVELKTTLMDAYCK 242 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p---~~~~~~~li~~~~~ 242 (323)
...| +.++|.+.++...... ..+..++..+-.++...|+.++|.++++.+.+..-. | +...+..+...+.+
T Consensus 648 ~~~g---~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 648 IAQG---DLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred HHCC---CHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence 9999 6699999999776532 234456667778888999999999999999875322 2 22456666788999
Q ss_pred cCCHHHHHHHHHhccC
Q 040801 243 CKFVSRAWDLFVKMLF 258 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~ 258 (323)
.|+.++|...|++...
T Consensus 724 ~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 724 TGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999998753
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.21 E-value=0.00048 Score=68.49 Aligned_cols=199 Identities=9% Similarity=-0.039 Sum_probs=141.3
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD- 124 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 124 (323)
+...++++.|.+.|+.+.+.+-. .|+ ...+ +-..|...|++++|...|++..+.. |.
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~-----------------~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~--p~~ 305 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQI-----------------IPPWAQRW--VASAYLKLHQPEKAQSILTELFYHP--ETI 305 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCC-----------------CCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcC--CCC
Confidence 34556777777777777665420 122 2222 4568889999999999999987542 22
Q ss_pred ----cccHHHHHHHhcchhh---HHHHHHHHHHcC-----------CCCc---hHHHHHHHHHHHhcCCCCChHHHHHHH
Q 040801 125 ----RFMFPSLFKSCADIYV---EKQLHSQAIKFG-----------LASD---SFLHNTLINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 125 ----~~ty~~ll~~~~~~~~---a~~~~~~m~~~g-----------~~~~---~~~~~~li~~~~~~g~~~~~~~a~~~~ 183 (323)
...+..+..++.+.++ |..+++.+.+.. -.|+ ...+..+...+...| +.++|++++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g---~~~eA~~~l 382 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN---DLPQAEMRA 382 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 2345566667777777 888888877652 1223 234566777888888 669999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CC
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WN 261 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~ 261 (323)
+++.... +-+...+..+...+...|+.++|+..+++..+.. |+ ...+..+...+.+.|++++|+.+++++.+. +.
T Consensus 383 ~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 383 RELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9997653 4467788888999999999999999999988764 65 566777777899999999999999999876 33
Q ss_pred chhhhHHHhhh
Q 040801 262 NYGQWAMSATV 272 (323)
Q Consensus 262 ~~~~~~~~~~~ 272 (323)
++....+-...
T Consensus 460 ~~~~~~~~~~~ 470 (765)
T PRK10049 460 DPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHH
Confidence 34333333333
No 41
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.19 E-value=2.2e-05 Score=63.70 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHH
Q 040801 87 NPTIYTCNSIVRGYTNK-----NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 161 (323)
..|-.+|..+|+.|.+. |.++=...-++.|.+-|+.-|..+|+.||..+-+ |. +.|... +-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~------------fvp~n~-fQ 109 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK------------FVPRNF-FQ 109 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC------------cccccH-HH
Confidence 66777888888888765 5566667778888999999999999999888875 22 223222 22
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD-LRTVKRVHKCVDE 223 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~ 223 (323)
++.--|-+ +-+-|++++++|...|+-||..|+..|++.+++.+. +.+..++.-.|-+
T Consensus 110 ~~F~hyp~-----Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 110 AEFMHYPR-----QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHhccCcH-----HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 22223444 337788899999989999999999999999988775 3445555555544
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=98.16 E-value=0.00036 Score=66.71 Aligned_cols=173 Identities=11% Similarity=-0.077 Sum_probs=114.7
Q ss_pred hHHHhcccCC--CC-ChhhHHHHHHHHH---------hCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---
Q 040801 77 HVRLVFSQIS--NP-TIYTCNSIVRGYT---------NKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV--- 140 (323)
Q Consensus 77 ~a~~lf~~m~--~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~--- 140 (323)
.|.++|++.. .| +...|..+-.++. ..+++++|.+.+++..+. .| +...+..+-..+...|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHH
Confidence 5666665544 33 3344544433333 234578899888887764 34 33455555445555555
Q ss_pred HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhccCChHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA-VTLVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~ 218 (323)
|...++...+.. |+ ...|..+-..|...| ++++|...+++..+.. |+. ..+..+...+...|+.++|...+
T Consensus 357 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G---~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 357 GSLLFKQANLLS--PISADIKYYYGWNLFMAG---QLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 888888887765 43 556777788888888 5689999998887744 432 23334455566788899999988
Q ss_pred HHHHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 219 KCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 219 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+++.+.. .| +...+..+-.+|...|+.++|...++++...
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 8876653 34 3445666777888899999999999887655
No 43
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.16 E-value=2.5e-06 Score=47.24 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=7.0
Q ss_pred HHHHHhccCChHHHHHHHHH
Q 040801 201 VLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~ 220 (323)
+|++|++.|++++|.++|++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33333333333333333333
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00015 Score=62.14 Aligned_cols=158 Identities=12% Similarity=0.089 Sum_probs=103.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCch----HHHHHHHHHHH
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS----FLHNTLINMYS 168 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~----~~~~~li~~~~ 168 (323)
|=+-|.+.|-+|+|.++|..+.+.|. .-....-.|+..|-...+ |.++-..+.+.|-.+.. ..|..|-..+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 44566777888888888887776442 122445666777766666 77777777666644432 22344444444
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHH-HHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL-TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
... +.+.|..++++-.+.+ |+.+-=++++ +.....|++.+|.+.++.+.+.+..--..+...|..+|...|+.+
T Consensus 192 ~~~---~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 192 ASS---DVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhh---hHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 444 5577788877766543 3333333333 455677888888888888887766556677788888888888888
Q ss_pred HHHHHHHhccCC
Q 040801 248 RAWDLFVKMLFP 259 (323)
Q Consensus 248 ~a~~~~~~m~~~ 259 (323)
+....+.++.+.
T Consensus 267 ~~~~fL~~~~~~ 278 (389)
T COG2956 267 EGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHc
Confidence 888888877665
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.12 E-value=0.00022 Score=66.25 Aligned_cols=234 Identities=13% Similarity=0.024 Sum_probs=149.6
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhh-HHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYT-CNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
..-+...|...|+++.|..++.+..+.=. +.+. +.-+.+.+ -+.+=..|...+++++|..+|+++..
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~-----------k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILE-----------KTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH-----------HccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34478889999999999999998876610 0000 11222222 23455678888999999999998843
Q ss_pred ---CCCCCCcccH----HHHHHHhcchhh---HHHHHHHHH-----HcCC-CCch-HHHHHHHHHHHhcCCCCChHHHHH
Q 040801 119 ---QGLIPDRFMF----PSLFKSCADIYV---EKQLHSQAI-----KFGL-ASDS-FLHNTLINMYSSCWCLDQPDEAIK 181 (323)
Q Consensus 119 ---~g~~p~~~ty----~~ll~~~~~~~~---a~~~~~~m~-----~~g~-~~~~-~~~~~li~~~~~~g~~~~~~~a~~ 181 (323)
...-++.... +.|-.+|.+.|+ |...++... ..|. .|.+ ..++.+...++..+ .+++|..
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~---~~Eea~~ 346 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN---EYEEAKK 346 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc---chhHHHH
Confidence 3344555444 444445778887 333333221 1222 2333 33566667777777 5588888
Q ss_pred HHHHHHH---cCCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHhC----Cc--c-ChhhHHHHHHHHHhcCCHH
Q 040801 182 IFYRMEI---ENVKPN----AVTLVNVLTARARARDLRTVKRVHKCVDESG----FW--S-HVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 182 ~~~~m~~---~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~--p-~~~~~~~li~~~~~~g~~~ 247 (323)
+++.-.. .-..++ ..+++.|-..|-..|++++|+.+++...+.. -. + .-..++.|-..|.+.++.+
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 8876543 112232 2589999999999999999999999986431 11 1 2445778888899999999
Q ss_pred HHHHHHHhcc----CCC-Cchhhh-HHHhhhccCCCCCcchhhhhhh
Q 040801 248 RAWDLFVKML----FPW-NNYGQW-AMSATVGPQGLVGRHSTAHQIS 288 (323)
Q Consensus 248 ~a~~~~~~m~----~~~-~~~~~~-~~~~~~~~~~~~~~~~~a~~l~ 288 (323)
+|.++|.+-. ..| ..|+.. +|......+...|+.++|..+.
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999988743 222 233443 7777777777777777776553
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.10 E-value=0.0008 Score=61.62 Aligned_cols=233 Identities=7% Similarity=-0.073 Sum_probs=140.0
Q ss_pred hhHHHhhc--CCCchHHHHHHHHHHHhcCCCCC-c--------cch---hHHHhcccCC--CCChhhHH--HHHHHHHhC
Q 040801 42 FCLVSLEK--CSTMRELKQIHAQMLRTSLFFDP-C--------ADY---HVRLVFSQIS--NPTIYTCN--SIVRGYTNK 103 (323)
Q Consensus 42 ~li~~~~~--~~~~~~a~~i~~~m~~~~~~~~~-y--------~~~---~a~~lf~~m~--~~~~~~~~--~li~~~~~~ 103 (323)
.+..++.. .|+++.|.+......+.+-.|.. | ... .|.+.|.++. .|+...+- ..-..+...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 34444333 37888888777765554322333 1 111 6777776665 34433332 224577778
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCC
Q 040801 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS-------FLHNTLINMYSSCWCL 173 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~ 173 (323)
|++++|.+.+++..+.. +-+...+..+...+.+.|+ +.+++..+.+.+..++. .+|..++.......
T Consensus 167 g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-- 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-- 243 (398)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 88888888888887653 2345667777777888887 77778888877654322 12333333333322
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
+.+...+++++.-.. .+.+......+...+...|+.++|..++++..+. .||.. -.++.+.+..|+.+++.+..
T Consensus 244 -~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 244 -GSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred -CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHH
Confidence 334445555444222 3456777778888888889999999888888774 34432 12334445568888888888
Q ss_pred HhccCC-CCchhhh-HHHhhhccCCCCCcchh
Q 040801 254 VKMLFP-WNNYGQW-AMSATVGPQGLVGRHST 283 (323)
Q Consensus 254 ~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (323)
++..++ +.++... ++...+...++.++..+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 887765 4455544 55666655555444433
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.05 E-value=0.0014 Score=65.20 Aligned_cols=216 Identities=11% Similarity=0.050 Sum_probs=120.2
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------ccch----hHHHhcccCC---CCChhhHHHHHHHHHhC
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYTNK 103 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~~~ 103 (323)
...-++....-.|+.+.|.+++.......-.+.. |... .|.++|++.. +.+...+..+...+...
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4455666677777777777777776652211111 1111 6666666632 44455566677777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCC-----
Q 040801 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLD----- 174 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~----- 174 (323)
|++++|...+++..+. .|+...+..+-..+...|+ |...++...+.. |+ ...+..+...+...|..+
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 7777777777777654 3332225555555555555 666666666543 32 233333444444443210
Q ss_pred -----------------------------------Ch---HHHHHHHHHHHHc-CCCCChH-HHH----HHHHHHhccCC
Q 040801 175 -----------------------------------QP---DEAIKIFYRMEIE-NVKPNAV-TLV----NVLTARARARD 210 (323)
Q Consensus 175 -----------------------------------~~---~~a~~~~~~m~~~-g~~p~~~-t~~----~li~~~~~~~~ 210 (323)
.+ ++|++.++.+... .-.|+.. .+. ..+.++...|+
T Consensus 173 l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 173 IDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 01 3455555555532 1223221 111 11344556788
Q ss_pred hHHHHHHHHHHHHhCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 211 LRTVKRVHKCVDESGFW-SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 211 ~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.++|...|+.+.+.+-. |+- .-..+..+|...|++++|..+|+++.+.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 88888888888776521 321 1122466788888899998888887654
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=98.04 E-value=0.00064 Score=65.02 Aligned_cols=171 Identities=10% Similarity=-0.037 Sum_probs=120.1
Q ss_pred hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHhcchhh---HHHHHHHHH
Q 040801 77 HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAI 149 (323)
Q Consensus 77 ~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~ 149 (323)
.|.+.+++.. +.+...|..+=..+...|++++|...|++..+. .|+ ...+..+-..+...|+ |...++...
T Consensus 322 ~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 322 KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555433 456677888877888999999999999998875 354 4456666667777777 888888887
Q ss_pred HcCCCCch-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc
Q 040801 150 KFGLASDS-FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227 (323)
Q Consensus 150 ~~g~~~~~-~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 227 (323)
+.. |+. ..+..+...+...| ++++|.+.+++..... .|+ ...+..+-..+...|+.++|...+.++... .
T Consensus 400 ~l~--P~~~~~~~~~~~~~~~~g---~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 400 KLD--PTRAAAGITKLWITYYHT---GIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred hcC--CCChhhHHHHHHHHHhcc---CHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 765 442 22333444566677 5699999999987643 343 445666777888999999999999887554 3
Q ss_pred cC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 228 SH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 228 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
|+ ....+.+...|++.| ++|...++++.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 43 334455666778888 4888877777653
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.00012 Score=68.11 Aligned_cols=224 Identities=10% Similarity=-0.031 Sum_probs=144.1
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCC-CC---ccch------------hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHH
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFF-DP---CADY------------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~-~~---y~~~------------~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~ 110 (323)
+..-++++.|+++|+...+..-.. +. |+.. .|.++.+.. +-...+|.++=.+|.-.++++.|+
T Consensus 363 yFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Ai 441 (638)
T KOG1126|consen 363 YFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAI 441 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHH
Confidence 333356777788887776653211 11 4333 333333332 345678999999999999999999
Q ss_pred HHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHH---HHHHHHhcCCCCChHHHHHHH
Q 040801 111 LFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNT---LINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 111 ~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~~~~~~a~~~~ 183 (323)
+.|++-.+ +.| ..++|+.+=+-+....+ |..-|+. .+..|...||+ |--.|.|.+ +++.|+-.|
T Consensus 442 k~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~----Al~~~~rhYnAwYGlG~vy~Kqe---k~e~Ae~~f 512 (638)
T KOG1126|consen 442 KCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRK----ALGVDPRHYNAWYGLGTVYLKQE---KLEFAEFHF 512 (638)
T ss_pred HHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHh----hhcCCchhhHHHHhhhhheeccc---hhhHHHHHH
Confidence 99988765 445 55666665433333333 5554443 34466666665 455678888 668999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCch
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY 263 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 263 (323)
+.-.+-+ .-|.+....+-..+-+.|+.++|.+++++.....-+ |+..--.-...+...++.++|.+.++++++- .|
T Consensus 513 qkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP 588 (638)
T KOG1126|consen 513 QKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VP 588 (638)
T ss_pred HhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Cc
Confidence 8776533 236677777778888999999999999998765422 3333334456677889999999999999875 34
Q ss_pred hhh-HHHhhhccCCCCCcchhh
Q 040801 264 GQW-AMSATVGPQGLVGRHSTA 284 (323)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~a 284 (323)
... .+...-..+.+.|+.+.|
T Consensus 589 ~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred chHHHHHHHHHHHHHHccchHH
Confidence 333 222222233344444444
No 50
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=0.00014 Score=52.61 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCccChhh
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARAR--------DLRTVKRVHKCVDESGFWSHVEL 232 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~ 232 (323)
..|..+...+ ++.....+|+..++.|+ -|++.+|+.++.+.++.. .+-....++..|...+++|+..+
T Consensus 30 ~~I~~~~~~~---d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 30 DNINSCFENE---DYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHhhc---chHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3444444446 55788888888888888 888888888888887653 24456778888888888888888
Q ss_pred HHHHHHHHHhc
Q 040801 233 KTTLMDAYCKC 243 (323)
Q Consensus 233 ~~~li~~~~~~ 243 (323)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 88888877653
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.96 E-value=0.0036 Score=55.16 Aligned_cols=201 Identities=14% Similarity=0.031 Sum_probs=122.2
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCC---cc-------ch---hHHHhcc---cCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDP---CA-------DY---HVRLVFS---QISNPTIYTCNSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~---y~-------~~---~a~~lf~---~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 112 (323)
.-||.+.+-..+.+..+..-.+.. -. +. .|++-.+ +|.+.+...-....+.|.+.|++.+...+
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence 335677777777666655222222 01 01 3333333 34477888899999999999999999999
Q ss_pred HHHHHHCCCCCCc-------ccHHHHHHHhcchhhHHH---HHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHH
Q 040801 113 YHEMIVQGLIPDR-------FMFPSLFKSCADIYVEKQ---LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182 (323)
Q Consensus 113 ~~~m~~~g~~p~~-------~ty~~ll~~~~~~~~a~~---~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~ 182 (323)
...|.+.|+--|. .+|..++.=....+.++. .|+..-. ..+-+...-.+++.-+..+| +.++|.++
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~---~~~~A~~~ 285 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLG---DHDEAQEI 285 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcC---ChHHHHHH
Confidence 9999999876555 577777777777666333 4444422 23445556677888888888 66899998
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH-HhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 183 FYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 183 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.++-..++..|+..+ +-.+.+.++.+.-.+..+.-. +.+-.| -.+.+|=..|.+.+.+.+|.+.|+...+.
T Consensus 286 i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 286 IEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 888877776655222 123334444444444444332 222222 44444555555555555555555544443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0012 Score=56.65 Aligned_cols=199 Identities=11% Similarity=0.057 Sum_probs=136.6
Q ss_pred hHHHhcccCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-------hcchhh---HHH
Q 040801 77 HVRLVFSQISNPTIYTC---NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-------CADIYV---EKQ 143 (323)
Q Consensus 77 ~a~~lf~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~-------~~~~~~---a~~ 143 (323)
.|..+|-+|.+.|..+| -+|=+-|-+.|..|+|+++-..+.++ ||. |+.-=+.+ |...|- |++
T Consensus 53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45555555544444444 34556788899999999999888765 543 44444333 333443 999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHhccCChHHHHHHHH
Q 040801 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA----VTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 144 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
+|..+.+.|. .-...--.|+..|-... ++++|+++-++....|-.+.. ..|.-+...+....+++.|..++.
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~tr---eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATR---EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999887552 22445677899999988 779999999988876544433 356666667777889999999999
Q ss_pred HHHHhCCccChhhHH-HHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCCCCCcchhhh
Q 040801 220 CVDESGFWSHVELKT-TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 220 ~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 285 (323)
+..+.. |+.+=-+ .+=+.+...|++++|.+.++...+...+..+......+..+...|+.++..
T Consensus 205 kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 205 KALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 987763 4433333 344578899999999999999998855555555555555555555555543
No 53
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.91 E-value=5.4e-05 Score=61.46 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=74.1
Q ss_pred CCCcccHHHHHHHhcchhh--------HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 122 IPDRFMFPSLFKSCADIYV--------EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 122 ~p~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
.-|..+|..++..+.+... ....+..|.+.|+.-|..+|+.|++.+=+ |.+ .--.+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f----vp~n~fQ~~F------ 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF----VPRNFFQAEF------ 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc----ccccHHHHHh------
Confidence 3455566666666554421 55556677777777777777777777665 322 1112222221
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC-HHHHHHHHHhcc
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF-VSRAWDLFVKML 257 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 257 (323)
. -...+-+-|..++++|...|+.||..|+..|++.|++.+. +.+..++.--|.
T Consensus 113 --------~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 --------M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred --------c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 1334677899999999999999999999999999998886 344444444443
No 54
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00013 Score=66.30 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=97.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ--GLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~ 161 (323)
..+......++..+.+.-+++++.+++...+.. ....-..|..++++.|.+.|. +..++..=...|+-||.+++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445666777888888888899999998888765 333344566799999999887 777777778889999999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 208 (323)
.||+.+.+.| ++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~---~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKG---NYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcc---cHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999 6699999999999888778888888888887766
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.83 E-value=0.0044 Score=61.57 Aligned_cols=194 Identities=11% Similarity=-0.032 Sum_probs=132.4
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG- 120 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 120 (323)
-.+.++.+.++++++.+-++.+...+. +.-..+=-.+-++|...+.+++|..+|+......
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~------------------~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGY------------------KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCC------------------CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 345566666777777777777777665 2122234566777888888888888888775432
Q ss_pred ----CCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCC-----------CC--ch-HHHHHHHHHHHhcCCCCChHHH
Q 040801 121 ----LIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGL-----------AS--DS-FLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 121 ----~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~-----------~~--~~-~~~~~li~~~~~~g~~~~~~~a 179 (323)
..++......|.-++...++ |..+++.+.+.-- .| |- ..+..++..+...| +..+|
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g---dl~~A 435 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN---DLPTA 435 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC---CHHHH
Confidence 22233335667777777777 7777777766210 11 11 22344566677778 55899
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
++.++++.... +-|......+-..+...|....|+..++..... .| +..+......++...|++++|..+.++..+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99998886654 457778888888888889999999988666554 44 456677788888888999999888877765
Q ss_pred C
Q 040801 259 P 259 (323)
Q Consensus 259 ~ 259 (323)
.
T Consensus 513 ~ 513 (822)
T PRK14574 513 R 513 (822)
T ss_pred h
Confidence 4
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.82 E-value=0.0013 Score=61.27 Aligned_cols=202 Identities=14% Similarity=0.093 Sum_probs=135.4
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH---
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV--- 118 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 118 (323)
.+-..+...+++++|..+|+.+..-- .++|.++.+.-..+++.|=..|++.|++++|..++++-.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~-----------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIR-----------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 35556666677777777777776432 1233343344456677777889999999999988877432
Q ss_pred C--C-CCCCcc-cHHHHHHHhcchhh---HHHHHHHHHHc---CCCC----chHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 040801 119 Q--G-LIPDRF-MFPSLFKSCADIYV---EKQLHSQAIKF---GLAS----DSFLHNTLINMYSSCWCLDQPDEAIKIFY 184 (323)
Q Consensus 119 ~--g-~~p~~~-ty~~ll~~~~~~~~---a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~~~~a~~~~~ 184 (323)
. | ..|.+. -++.+...++..++ |..+++...+. -..+ -.-+++.|-..|-+.| ++++|.++|+
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k 391 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG---KYKEAEELYK 391 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc---chhHHHHHHH
Confidence 2 1 122222 23333444444444 55555544322 1122 2467899999999999 5699999999
Q ss_pred HHHHc-----C-CCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHH----hCCc-c-ChhhHHHHHHHHHhcCCHHHHHH
Q 040801 185 RMEIE-----N-VKPN-AVTLVNVLTARARARDLRTVKRVHKCVDE----SGFW-S-HVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 185 ~m~~~-----g-~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~-p-~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
+.... | ..+. -..++.+-..|.+.+....|.++|.+... .|.. | ...+|..|...|-+.|++++|.+
T Consensus 392 ~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 392 KAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 88642 1 1222 45677788899999999999999888753 3322 2 25679999999999999999999
Q ss_pred HHHhcc
Q 040801 252 LFVKML 257 (323)
Q Consensus 252 ~~~~m~ 257 (323)
+.+...
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 988775
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.81 E-value=0.0056 Score=56.32 Aligned_cols=235 Identities=9% Similarity=-0.116 Sum_probs=141.7
Q ss_pred hhhHHHhhc--CCCchHHHHHHHHHHHhcCCCCC---------ccch---hHHHhcccCC--CCCh--hhHHHHHHHHHh
Q 040801 41 HFCLVSLEK--CSTMRELKQIHAQMLRTSLFFDP---------CADY---HVRLVFSQIS--NPTI--YTCNSIVRGYTN 102 (323)
Q Consensus 41 ~~li~~~~~--~~~~~~a~~i~~~m~~~~~~~~~---------y~~~---~a~~lf~~m~--~~~~--~~~~~li~~~~~ 102 (323)
..+..++.. .|+++.|.+.+....+..-.|.. .... .|.+.+.+.. .|+. ..--.....+..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 334444433 47899999999876665322222 1111 6777776643 2333 233334777888
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHH---HhcCCCCCh
Q 040801 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMY---SSCWCLDQP 176 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~~ 176 (323)
.|++++|.+.++++.+.. +-+...+..+...+...|+ +.+++..+.+.+..+....-..-..++ ...+ ..
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~---~~ 241 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA---MA 241 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HH
Confidence 999999999999998864 2244577788888888888 888899998887543332211111111 2222 11
Q ss_pred HHHHHHHHHHHHcC---CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH-HHHHH--HHHhcCCHHHHH
Q 040801 177 DEAIKIFYRMEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK-TTLMD--AYCKCKFVSRAW 250 (323)
Q Consensus 177 ~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~--~~~~~g~~~~a~ 250 (323)
+++.+.+.++.... .+.+...+..+...+...|+.++|..++++..+.. ||.... ..++. .....++.+++.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHH
Confidence 23334454444432 12377888888899999999999999999988864 333310 01223 234457888888
Q ss_pred HHHHhccCC-CCch--hhh-HHHhhhccCCCCCcc
Q 040801 251 DLFVKMLFP-WNNY--GQW-AMSATVGPQGLVGRH 281 (323)
Q Consensus 251 ~~~~~m~~~-~~~~--~~~-~~~~~~~~~~~~~~~ 281 (323)
+.+++..+. +.++ ... ++...+...++.++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 888877654 4455 332 555555454443333
No 58
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.00051 Score=62.39 Aligned_cols=129 Identities=7% Similarity=0.004 Sum_probs=104.1
Q ss_pred HHHHHHH---CCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCCCChHHHHHHH
Q 040801 112 FYHEMIV---QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF--GLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 112 ~~~~m~~---~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~ 183 (323)
++.+|.+ ++.+.+......+++.+....+ +..++...+.. ....-..|..++|..|.+.| ..+++++++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~---~~~~~l~~L 126 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELG---AEDELLELL 126 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcC---CHHHHHHHH
Confidence 5555533 4566778888899999888888 66666666544 33333455679999999999 669999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 243 (323)
+.-..-|+-||..|||.||..+.+.|++..|.+|..+|...+...+..|+..-+.+|.+.
T Consensus 127 ~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877777888888777777776
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00073 Score=58.09 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=109.9
Q ss_pred hHHHhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHH-Hhcchhh---HHHHHHHHHH
Q 040801 77 HVRLVFSQIS--NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFK-SCADIYV---EKQLHSQAIK 150 (323)
Q Consensus 77 ~a~~lf~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~-~~~~~~~---a~~~~~~m~~ 150 (323)
+|.+.|+.-. .|-+.+|-.|-++|.+..+++.|+.+|.+-.+. .|..+||-.=+- .+-..++ +.++++...+
T Consensus 241 ~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 6666665433 566677777777777777777777777766543 455555543221 1111111 6666766665
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-
Q 040801 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH- 229 (323)
Q Consensus 151 ~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~- 229 (323)
.. ..++....++-.+|.-.+ ++|-|++.++.+.+.|+. +...|+.+=-+|...++++.+..-|.+....--.|+
T Consensus 319 ~~-~~nvEaiAcia~~yfY~~---~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 319 LH-PINVEAIACIAVGYFYDN---NPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred cC-CccceeeeeeeeccccCC---ChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence 43 223444455555565555 667788888877777754 667777777777777777777777777765443343
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 230 -VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 230 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..+|-.|=...+..|++.-|.+.|+-....
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 234555555666777777777777766654
No 60
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.69 E-value=0.00078 Score=62.58 Aligned_cols=231 Identities=17% Similarity=0.048 Sum_probs=141.1
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC--CCChhhHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS--NPTIYTCNSIVRGY 100 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~--~~~~~~~~~li~~~ 100 (323)
.-+|.-+-+.+...|++++|...++.+++.. |+- +.+. .|...|.+-. .|+.....+-+..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 3456778889999999999999999998763 222 1111 4444444333 34333333333333
Q ss_pred Hh-CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCCC
Q 040801 101 TN-KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLDQ 175 (323)
Q Consensus 101 ~~-~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 175 (323)
.+ .|++++|...|.+-.+..- --...|+.|=..+-..|+ |.+.|++..+ +.|+ ...|-.|=..|...+ .
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~---~ 267 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEAR---I 267 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHh---c
Confidence 33 4667777777666544311 112344444444445555 5555555444 3344 234555555666666 4
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 176 PDEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
+++|+.-+.+-.. .+|+ .+.|..+--.|-..|+++.|...+++..+. .|+ ...|+.|-.++-..|++.+|+..+
T Consensus 268 ~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 4677766655443 4454 467777777777888899988888887765 454 567888999999999999999999
Q ss_pred HhccCC-CCchhhh-HHHhhhccCCCCC
Q 040801 254 VKMLFP-WNNYGQW-AMSATVGPQGLVG 279 (323)
Q Consensus 254 ~~m~~~-~~~~~~~-~~~~~~~~~~~~~ 279 (323)
++...- ++.++.. .+..+++..++.+
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 887654 4444444 5555555555433
No 61
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.69 E-value=0.018 Score=53.91 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=124.8
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-----------ccch---hHHHhcccCC--CCC-hhhHHHHHHHHHhCC
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-----------CADY---HVRLVFSQIS--NPT-IYTCNSIVRGYTNKN 104 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-----------y~~~---~a~~lf~~m~--~~~-~~~~~~li~~~~~~g 104 (323)
-|=..+...+.++.|...+..... ..|+. |... .|-.-+++-. +|+ ...||.|-.++-..|
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG 334 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence 333445555566666666655433 23443 2222 3444443322 333 356777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCCChHHH
Q 040801 105 LHHEAFLFYHEMIVQGLIPDR-FMFPSLFKSCADIYV---EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 105 ~~~~A~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~a 179 (323)
++.+|.+.|+.-... -|+. .+.+.|-..+...|. |..+|....+. .|+ ...+|.|-..|-..| +.++|
T Consensus 335 ~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqg---nl~~A 407 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQG---NLDDA 407 (966)
T ss_pred chHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcc---cHHHH
Confidence 777777777766543 2322 445556566665555 66655555443 333 455677777777777 44777
Q ss_pred HHHHHHHHHcCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 180 IKIFYRMEIENVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+.-+++..+ +.|+- ..|+.+=..|-..|+++.|.+.+.+.... .|. ....+.|-..|-..|++.+|..-+++..
T Consensus 408 i~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 408 IMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 777777655 66664 56777777777777888887777776664 343 4456677777778888888888887765
Q ss_pred C
Q 040801 258 F 258 (323)
Q Consensus 258 ~ 258 (323)
+
T Consensus 484 k 484 (966)
T KOG4626|consen 484 K 484 (966)
T ss_pred c
Confidence 4
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.68 E-value=0.02 Score=50.65 Aligned_cols=173 Identities=7% Similarity=-0.048 Sum_probs=130.5
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTL 163 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~l 163 (323)
+.....|..-..+--..|+.++|-+++.+..+.--.++...+-+.-+.....|+ |..-...+.+.+- .+..+-...
T Consensus 115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa 193 (400)
T COG3071 115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLA 193 (400)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHH
Confidence 445566777778888889999999999998775334555555556666777776 6666677766653 346678899
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCC-------hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPN-------AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
..+|.+.| ++.....+..+|...|.--| ..+|+.+++-....++.+.-...|+....+ .+-++..-.++
T Consensus 194 ~r~y~~~g---~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~ 269 (400)
T COG3071 194 LRAYIRLG---AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAY 269 (400)
T ss_pred HHHHHHhc---cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHH
Confidence 99999999 66899999999998886443 348888888888888877777777776443 34567777888
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCchh
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFPWNNYG 264 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~~~~~~ 264 (323)
+.-+.++|+.++|.++..+-.++.-++.
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 8899999999999999988877654555
No 63
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.0013 Score=61.50 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=106.9
Q ss_pred hHHHhcccCC--CCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHhcchhhHHHHHHHHHHc
Q 040801 77 HVRLVFSQIS--NPTIY-TCNSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVEKQLHSQAIKF 151 (323)
Q Consensus 77 ~a~~lf~~m~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~ 151 (323)
+|...|..++ .+|+. .-.-+=++|...+++++|.++|+..++.. ..-+...|.+.|-.+-+.-.---+-+++.+.
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~ 416 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT 416 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 7888887766 44554 22345568888999999999999987642 3457788888877766554411222333332
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh
Q 040801 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
. .-...+|-++=++|+-.+ +.+.|++.|++-.+ +.| ...+|+.+=.-+.....+|+|...|+... ..|+
T Consensus 417 ~-~~sPesWca~GNcfSLQk---dh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~ 486 (638)
T KOG1126|consen 417 D-PNSPESWCALGNCFSLQK---DHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDP 486 (638)
T ss_pred C-CCCcHHHHHhcchhhhhh---HHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCc
Confidence 2 234577888888888887 66888888877665 344 44566555455555556666666665533 2345
Q ss_pred hhHHHHHH---HHHhcCCHHHHHHHHHhccC
Q 040801 231 ELKTTLMD---AYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 231 ~~~~~li~---~~~~~g~~~~a~~~~~~m~~ 258 (323)
..|+++-. .|.|.++++.|+-.|++..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 55554433 46666666666666666554
No 64
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.61 E-value=0.0091 Score=60.49 Aligned_cols=204 Identities=10% Similarity=0.013 Sum_probs=97.7
Q ss_pred CcccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 040801 33 NINSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 33 ~~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 112 (323)
..++...|-.+++..-..++.+.|++++++.... +.+.. + +--.-.|.++++--.-.|.-+...++
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~RE-----------e--eEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFRE-----------E--EEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcch-----------h--HHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3345556666777777778888888888877654 21111 0 01112344444444444455555555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 040801 113 YHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189 (323)
Q Consensus 113 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 189 (323)
|++..+..- -...|..|..-|.+.+. |.++++.|.+. +.-...+|-...+.+.+.. +-+.|.+++.+-...
T Consensus 1520 FeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~n---e~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1520 FERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQN---EAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhccc---HHHHHHHHHHHHHhh
Confidence 555544311 11334444444444444 55555555432 1133444555555555544 224445555443321
Q ss_pred CCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 190 NVKPN---AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 190 g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-|- +....-.+..=.+.||.+.+..+|+.....- +--.-.|+..|++=.+.|+.+.+..+|++....
T Consensus 1594 --lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1594 --LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred --cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 121 2222222333335555555555555554431 112445555555555555555555555555444
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.60 E-value=0.02 Score=53.94 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=20.3
Q ss_pred cccchhh-hhhHHHhhcCCCchHHHHHHHHHHHhc
Q 040801 34 INSQYQA-HFCLVSLEKCSTMRELKQIHAQMLRTS 67 (323)
Q Consensus 34 ~~~~~~~-~~li~~~~~~~~~~~a~~i~~~m~~~~ 67 (323)
+.|..++ ......+.+.|+.++|..++..+.+++
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444433 344455666677777777777777764
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.54 E-value=0.015 Score=48.99 Aligned_cols=164 Identities=13% Similarity=-0.022 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHhcchhh---HHHHHHHHHHcCCC-Cch-HH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR----FMFPSLFKSCADIYV---EKQLHSQAIKFGLA-SDS-FL 159 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~-~~~-~~ 159 (323)
....+-.+...+.+.|++++|...|++.... .|+. .++..+-.++...|+ |...++.+.+..-. +.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445556666777788888888888777553 2332 234445555555566 77777777654311 111 12
Q ss_pred HHHHHHHHHhc--------CCCCChHHHHHHHHHHHHcCCCCChH-HH-----------------HHHHHHHhccCChHH
Q 040801 160 HNTLINMYSSC--------WCLDQPDEAIKIFYRMEIENVKPNAV-TL-----------------VNVLTARARARDLRT 213 (323)
Q Consensus 160 ~~~li~~~~~~--------g~~~~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~~~~~~ 213 (323)
+..+-.++... | +.++|.+.|++..... |+.. .+ -.+-..+.+.|+..+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQT---AAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHhcccccCCHH---HHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 33333333322 3 5578888888887643 3321 11 134456778899999
Q ss_pred HHHHHHHHHHhC--CccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 214 VKRVHKCVDESG--FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 214 a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
|...++...+.. -+.....+..+..+|.+.|+.++|...++.+..+
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999987652 1223567888999999999999999999888765
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.023 Score=51.32 Aligned_cols=245 Identities=13% Similarity=0.049 Sum_probs=165.2
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCC-----------ccch-------hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHH
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDP-----------CADY-------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~-----------y~~~-------~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~ 110 (323)
..+|+|.|..+|+++.+.. |-. |.+. .|..+++ +.+--..|+.++-.-|.-.++.++|.
T Consensus 274 ~~rDfD~a~s~Feei~knD--PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv 350 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKND--PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAV 350 (559)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHH
Confidence 3468999999999999873 222 3333 3444432 23444567777778888889999999
Q ss_pred HHHHHHHHCCCCCC-cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 040801 111 LFYHEMIVQGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186 (323)
Q Consensus 111 ~~~~~m~~~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m 186 (323)
.+|+.-.+- -|. ...|+.+=+-|....+ |.+-+....+.. ..|-..|-.|=.+|.-.+ .+.=|+-.|++-
T Consensus 351 ~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~---Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 351 MYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK---MHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc---chHHHHHHHHHH
Confidence 999887663 233 3456666566666655 666666666644 346778888888888877 446777777776
Q ss_pred HHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC----C-
Q 040801 187 EIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----W- 260 (323)
Q Consensus 187 ~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~- 260 (323)
.. ++| |...|.+|=++|.+.++.++|.+.|......| ..+...+..|-+.|-+.++..+|...|++..+. |
T Consensus 425 ~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 425 LE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred Hh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 55 445 67899999999999999999999999998876 224578899999999999999999998887653 2
Q ss_pred Cchhhh-HHHhhhccCCCCCcchhhhh----hh-CCCCchhHHHHHHHHHh
Q 040801 261 NNYGQW-AMSATVGPQGLVGRHSTAHQ----IS-GPCPKKAHKLFFFSMLK 305 (323)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~~~~a~~----l~-~~~~~~~~~~~~~~M~~ 305 (323)
.++... +..-.-.-+.+.++.++|.. .. +....++++.++.+..+
T Consensus 502 ~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 222222 22223333445666666632 22 22223445555555544
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.52 E-value=0.005 Score=53.67 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhh
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVEL 232 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~ 232 (323)
.-.....|..|.+.+ +++.|.+.++.|.+- ..| .+...+..+++. ...+..|..+|+++.+. +.+++.+
T Consensus 131 lE~~al~Vqi~L~~~---R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ 203 (290)
T PF04733_consen 131 LELLALAVQILLKMN---RPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKL 203 (290)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHH
T ss_pred ccHHHHHHHHHHHcC---CHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHH
Confidence 334444555555555 335555555555432 222 222233333332 12355555556555432 3445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 233 KTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 233 ~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.+.+..++...|++++|.+++++..+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555556666666665555443
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.45 E-value=0.036 Score=48.58 Aligned_cols=161 Identities=10% Similarity=-0.033 Sum_probs=102.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNT 162 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~ 162 (323)
+.+...|+.+=..+...|++++|.+.|+...+ +.|+ ..+|..+-..+...|+ |.+.++...+.. |+......
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~ 170 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRAL 170 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 45678899999999999999999999999876 3454 3455555555555666 777777776654 54332222
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh---C--Ccc-ChhhHHHH
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES---G--FWS-HVELKTTL 236 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g--~~p-~~~~~~~l 236 (323)
....+...+ +.++|.+.|.+..... .|+...+ .+ .....|+...+ ..+..+.+. . +.| ....|..+
T Consensus 171 ~~~l~~~~~---~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~L 242 (296)
T PRK11189 171 WLYLAESKL---DPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYL 242 (296)
T ss_pred HHHHHHccC---CHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 121222334 6789999997755332 3333222 22 22235555554 355555431 1 111 24578888
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-..|.+.|+.++|...|++..+.
T Consensus 243 g~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 243 AKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 88999999999999999998765
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.42 E-value=0.0058 Score=53.25 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=107.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh--cCC
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS--CWC 172 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~ 172 (323)
..+...|++++|++++..- .+.......+..+.+.++ |.+.++.|.+.. .|.. -..|..++.. .|.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCc
Confidence 3566679999999888642 455677777888888888 999999998754 4443 3344444443 232
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCH-HHHHH
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV-SRAWD 251 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~ 251 (323)
+.+++|..+|+++.+. ..++..+.|.+..++...|++++|+.++.+..+.+ +-+..+...+|-...-.|+. +.+.+
T Consensus 181 -e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 181 -EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp -TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred -hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 2679999999998654 56889999999999999999999999999976543 22455666677777777777 78889
Q ss_pred HHHhccCC
Q 040801 252 LFVKMLFP 259 (323)
Q Consensus 252 ~~~~m~~~ 259 (323)
.+.+++..
T Consensus 258 ~l~qL~~~ 265 (290)
T PF04733_consen 258 YLSQLKQS 265 (290)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHh
Confidence 99998864
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.42 E-value=0.0046 Score=47.92 Aligned_cols=117 Identities=8% Similarity=-0.122 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
-+.+++...+.. |+. +..+-..+...| ++++|.+.|+...... ..+...|..+-..+...|++++|...|+.
T Consensus 12 ~~~~~~~al~~~--p~~--~~~~g~~~~~~g---~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 12 PEDILKQLLSVD--PET--VYASGYASWQEG---DYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHHcC--HHH--HHHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555555543 553 445666778888 6699999999988754 34778889999999999999999999999
Q ss_pred HHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh
Q 040801 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW 266 (323)
Q Consensus 221 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~ 266 (323)
..+.. +.+...+..+-.++.+.|+.++|...|+...+. +.++..|
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99764 346788888999999999999999999998764 3444444
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.31 E-value=0.038 Score=45.51 Aligned_cols=183 Identities=12% Similarity=-0.002 Sum_probs=139.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
.-|=-+|...|+...|..-+++-.+. .| +..++..+-..|-+.|+ |.+-|+...+.. .-+..+.|..=-.+|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 33445899999999999999998775 34 44677888888888888 888888877654 2245566777777889
Q ss_pred cCCCCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.| .+++|...|++-...- +.--..||..+--+-.+.|+.+.|+..+++..+..-. ...+.-.+.+...+.|+.-.
T Consensus 116 qg---~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 116 QG---RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred CC---ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 99 6699999998887642 3334568888888888999999999999999886421 35567788889999999999
Q ss_pred HHHHHHhccCCCCchhhhHHHhhhccCCCCCcchhh
Q 040801 249 AWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTA 284 (323)
Q Consensus 249 a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a 284 (323)
|...++....++. +...++...++.-...|+...+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHH
Confidence 9999999998864 5555666666666666665443
No 73
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.014 Score=52.67 Aligned_cols=131 Identities=11% Similarity=-0.041 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
|...|+...+.+ .-....|+-+=+-|..-. +...|.+-++.-.+-+ +-|-..|=.|=++|.-.+...-|...|.+
T Consensus 349 Av~YFkRALkLN-p~~~~aWTLmGHEyvEmK---Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 349 AVMYFKRALKLN-PKYLSAWTLMGHEYVEMK---NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHhcC-cchhHHHHHhhHHHHHhc---ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 555555555544 122455666666666655 4466666666655432 33556666677777777777777777777
Q ss_pred HHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCc--hhhhHHHhhhccCCC
Q 040801 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN--YGQWAMSATVGPQGL 277 (323)
Q Consensus 221 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~~~~~~~ 277 (323)
..+.. +-|...|.+|=+.|.+.+++++|.+.|.....-+.. ...|.....+..+++
T Consensus 424 A~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 424 ALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred HHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 66642 347999999999999999999999999988765422 222344444444443
No 74
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.27 E-value=0.04 Score=56.12 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=140.9
Q ss_pred CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCC---cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchH
Q 040801 87 NPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIPD---RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSF 158 (323)
Q Consensus 87 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~ 158 (323)
.|| ...|-..|......++.++|.+++++-... ++.-. ...|.++++.-.-.|. ..++|+..-+.. ---.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 444 467999999999999999999999997653 11111 1345555554444443 788888877653 3356
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC---hhhHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH---VELKTT 235 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ 235 (323)
+|..|...|.+.+ .+++|.++++.|..+ +.-....|...+..+.+..+-+.|..++.+..+. -|. .....-
T Consensus 1532 V~~~L~~iy~k~e---k~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSE---KNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISK 1605 (1710)
T ss_pred HHHHHHHHHHHhh---cchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHH
Confidence 7999999999999 669999999999864 2356789999999999999999999999998765 333 445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcc
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRH 281 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~ 281 (323)
.+..=.++|+.+++..+|+..... +-..+.| .|+.+-..++....+
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 677778999999999999988764 5567889 788887777754333
No 75
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.27 E-value=0.042 Score=50.63 Aligned_cols=148 Identities=10% Similarity=0.092 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHCC-CCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHHHH
Q 040801 106 HHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDEAI 180 (323)
Q Consensus 106 ~~~A~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~a~ 180 (323)
.+...+.+++....- +.| ..+|..+|+..-+... |..+|....+.+..+ ++++++++|.-||.. +.+-|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk----D~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK----DKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC----ChhHHH
Confidence 556666777765543 444 4567777776666544 999999999998877 899999999999986 557899
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC--hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH--VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
++|+-=... ..-+..--...+.-+...++-..+..+|++..+.++.|| ...|..+|+-=...|++..+.++-+++..
T Consensus 422 rIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 422 RIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999654332 233334445677888889999999999999998877765 57899999999999999999998887654
Q ss_pred C
Q 040801 259 P 259 (323)
Q Consensus 259 ~ 259 (323)
.
T Consensus 501 a 501 (656)
T KOG1914|consen 501 A 501 (656)
T ss_pred h
Confidence 3
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.049 Score=49.19 Aligned_cols=161 Identities=9% Similarity=0.017 Sum_probs=99.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHH
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
-..|++++|++.|-.+..- +.-+....-.+-..|-...+ +..+--.|....+.| |..+.+.|-+.|-+.| +-..
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqeg---dksq 610 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG---DKSQ 610 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccc---chhh
Confidence 3445566666665544321 11122223333333333333 222222233444444 6777888888888888 4467
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHH-hcCCHHHHHHHHHhcc
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC-KCKFVSRAWDLFVKML 257 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 257 (323)
|++..-+--+ =+.-|..|...|-.-|....-.+++...|++..- +.|+..-|..+|..|. +.|++.+|.+++++..
T Consensus 611 afq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7766544322 2445777888888888888888888888887543 5799999999888655 5899999999999998
Q ss_pred CC-CCchhhhHH
Q 040801 258 FP-WNNYGQWAM 268 (323)
Q Consensus 258 ~~-~~~~~~~~~ 268 (323)
++ +-+.....+
T Consensus 688 rkfpedldclkf 699 (840)
T KOG2003|consen 688 RKFPEDLDCLKF 699 (840)
T ss_pred HhCccchHHHHH
Confidence 76 334444433
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.16 Score=46.44 Aligned_cols=216 Identities=11% Similarity=-0.003 Sum_probs=138.5
Q ss_pred hhHHHhhcCC-CchHHHHHHHHHH---HhcCCCCCccch---------hHHHhcccCC------CCChhhHHHHHHHHHh
Q 040801 42 FCLVSLEKCS-TMRELKQIHAQML---RTSLFFDPCADY---------HVRLVFSQIS------NPTIYTCNSIVRGYTN 102 (323)
Q Consensus 42 ~li~~~~~~~-~~~~a~~i~~~m~---~~~~~~~~y~~~---------~a~~lf~~m~------~~~~~~~~~li~~~~~ 102 (323)
.=+..+.+.| ++....+.|+.+. ..+-.|+.|-.. ++++.-++++ .++...+...+.+...
T Consensus 207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 3355566666 5667778888877 344444443333 5666666776 5566667777776665
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHH
Q 040801 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~ 180 (323)
...-..+-.++.+-.+.+ -...-|..-+..+-...- |+..+..+.+.- .-|.+.+....+.+.+.+ +.++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~--~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~n---k~~~A~ 360 (484)
T COG4783 287 ALPNQQAADLLAKRSKRG--GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEAN---KAKEAI 360 (484)
T ss_pred cccccchHHHHHHHhCcc--chHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---ChHHHH
Confidence 555444444443332211 122334444444322211 888888876643 335566667778888888 558899
Q ss_pred HHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 181 KIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 181 ~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.++.+... .|+ ....-++-+++.+.|+..+|.++++...... +-|+..|..|-.+|...|+..++.....++...
T Consensus 361 e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 361 ERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 989888764 455 4555567788888999998888888876542 457888999999999999988888888777654
Q ss_pred CCchhhh
Q 040801 260 WNNYGQW 266 (323)
Q Consensus 260 ~~~~~~~ 266 (323)
-.....|
T Consensus 438 ~G~~~~A 444 (484)
T COG4783 438 AGRLEQA 444 (484)
T ss_pred CCCHHHH
Confidence 3234444
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.24 E-value=0.023 Score=50.93 Aligned_cols=153 Identities=11% Similarity=-0.048 Sum_probs=102.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHhcch----hh---HHHHHHHHHHcCCCCch-HHHHHHHHHHH
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRF-MFPSLFKSCADI----YV---EKQLHSQAIKFGLASDS-FLHNTLINMYS 168 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-ty~~ll~~~~~~----~~---a~~~~~~m~~~g~~~~~-~~~~~li~~~~ 168 (323)
..+...|++++|.+++++..+. .|+.. .+.. ...+... +. +.+.+.. .....|+. .....+-..+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3556789999999999998765 34332 3331 1112122 22 3333333 22233433 34445566778
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-ccCh--hhHHHHHHHHHhcCC
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF-WSHV--ELKTTLMDAYCKCKF 245 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~ 245 (323)
..| ++++|.+.+++..... +.+...+..+-..+...|++++|...++...+..- .|+. ..|..+...+...|+
T Consensus 126 ~~G---~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 126 EAG---QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HcC---CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 888 6699999999998754 33466777888889999999999999998876421 2232 345678889999999
Q ss_pred HHHHHHHHHhccCC
Q 040801 246 VSRAWDLFVKMLFP 259 (323)
Q Consensus 246 ~~~a~~~~~~m~~~ 259 (323)
.++|..++++....
T Consensus 202 ~~~A~~~~~~~~~~ 215 (355)
T cd05804 202 YEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997543
No 79
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.20 E-value=0.017 Score=52.35 Aligned_cols=108 Identities=14% Similarity=0.012 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
|..+++.+.+.. |+.. ..|...+...+ +-.+|++++++..... +-|......-.+.|.+.++.+.|..+.++
T Consensus 188 ai~lle~L~~~~--pev~--~~LA~v~l~~~---~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 188 AIELLEKLRERD--PEVA--VLLARVYLLMN---EEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred HHHHHHHHHhcC--CcHH--HHHHHHHHhcC---cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888999988776 6543 34777777666 5589999998888643 33566666666778899999999999999
Q ss_pred HHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 221 VDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 221 m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+.+. .|+ ..+|..|..+|.+.|++++|...++.+..
T Consensus 260 av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 260 AVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9886 454 56999999999999999999999998863
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.014 Score=50.54 Aligned_cols=207 Identities=14% Similarity=-0.012 Sum_probs=148.6
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCC-------ccch----hHHHhcccCC--CCChhhH-HHHHHHHHhCCChHHHHHH
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDP-------CADY----HVRLVFSQIS--NPTIYTC-NSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~-------y~~~----~a~~lf~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~~ 112 (323)
+-+-|-+.+|.+-++.-.++--.|++ |.+. .|+.+|.+-. -|-.++| .-+-+.+-..++.++|.++
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 33446678888888877777667777 6666 8999998765 4444444 4456677778999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 040801 113 YHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189 (323)
Q Consensus 113 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 189 (323)
|++..+. ..-+++...++-.+|.-.++ |...+..+.+.|+. +...|+.+--+|.-.+ ++|-++--|..-...
T Consensus 313 Yk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq---Q~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 313 YKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ---QIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc---chhhhHHHHHHHHhh
Confidence 9987654 23355555555555554444 99999999999964 4555666666666666 557787777766553
Q ss_pred CCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 190 NVKPN--AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 190 g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
--.|+ ...|-.|=...+..||+..|.+.|......+-. ....+|.|--.-.+.|++++|..+++.....
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 32233 345666777778899999999999998876422 3567888888888999999999999987764
No 81
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.18 E-value=0.0044 Score=52.41 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred hHHHhcccCC--CCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---------
Q 040801 77 HVRLVFSQIS--NPTIYTCNSIVRGYTNK-----NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--------- 140 (323)
Q Consensus 77 ~a~~lf~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--------- 140 (323)
..++.|...+ ++|-.+|-+.+..|... +.++=...-++.|++.|+.-|..+|+.||+.+-+-.-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 5667777776 78888888888888654 4566666677889999999999999999888765332
Q ss_pred ----------HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 141 ----------EKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 141 ----------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
+.+++++|+..|+.||.-+-..||+++++.+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 6667777777777777777777777776665
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.14 E-value=0.059 Score=52.47 Aligned_cols=166 Identities=10% Similarity=0.056 Sum_probs=108.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----------------------cccHHH----HHHHhcchhh-
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----------------------RFMFPS----LFKSCADIYV- 140 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------~~ty~~----ll~~~~~~~~- 140 (323)
-+...+|++...|.+...++.|......+......+| ...|.. +.-++.+...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 3445677777888888888888887777766222222 122211 1111222222
Q ss_pred --HHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHH
Q 040801 141 --EKQLHSQAIKFG--LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKR 216 (323)
Q Consensus 141 --a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 216 (323)
.+-+...+.+.. ..-+.-.|.-+.++|...| .+.+|+++|......-.--+...|-.+-++|-..|..+.|.+
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~---~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG---KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc---cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 555555555655 3345667888888888888 558888888888775444467788888888888888888888
Q ss_pred HHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 217 VHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 217 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.++..... .|+ .-.--.|-..|-+.|+.++|.++++.|..
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 88888765 233 33334556677788888888888888753
No 83
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.12 E-value=0.009 Score=41.13 Aligned_cols=94 Identities=19% Similarity=0.049 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHH
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 239 (323)
+..+...+...| ++++|.++|++..... ..+...+..+...+...+++++|...++...+.. ..+...+..+...
T Consensus 3 ~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLG---DYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHh---cHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHH
Confidence 455667777888 6699999999987653 2344677788888889999999999999987754 3344678888899
Q ss_pred HHhcCCHHHHHHHHHhccC
Q 040801 240 YCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 240 ~~~~g~~~~a~~~~~~m~~ 258 (323)
+...|+.++|...+++..+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 9999999999999988754
No 84
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.10 E-value=0.016 Score=44.00 Aligned_cols=98 Identities=8% Similarity=-0.106 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
......+...+...| ++++|.+.|+.....+ ..+...+..+-..+...|++++|..+++...+.+ +.+...+..+
T Consensus 17 ~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 17 LEQIYALAYNLYQQG---RYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 344666777788888 6699999999887755 3467788888888889999999999999887764 3456777778
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-..|...|+.++|...|+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999988765
No 85
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.0054 Score=53.29 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHH
Q 040801 141 EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 141 a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
+..+|...++.+ +..++++..++|.-++.. +.+.|.++|+..... +.-+...|..-+.-+.+.++.+.|..+|+
T Consensus 20 aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~----d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 20 ARKVFKRARKDKRCTYHVYVAYALMEYYCNK----DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-----HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 444444444332 233444444444333221 223355555444432 23344444444455555555555555555
Q ss_pred HHHHhCCcc---ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 220 CVDESGFWS---HVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 220 ~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+.... +.+ ....|...++-=.+.|+++.+..+.+++.
T Consensus 95 r~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 95 RAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54432 111 12345555555555555555555554443
No 86
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.03 E-value=0.023 Score=51.47 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=91.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
-..|++.+...++++.|.++|+++.+.. |+ ....+.+.+...++ |.+++.+..+.. .-+......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456667777799999999999999875 54 44456666655555 777777776432 3356666666777888
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNA-VTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
.+ +.+.|+++.++... ..|+. .+|..|..+|...|+++.|...++-+-
T Consensus 247 k~---~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KK---KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cC---CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88 66999999999987 45665 599999999999999999999888764
No 87
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.02 E-value=0.033 Score=43.12 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhccCChHHH
Q 040801 141 EKQLHSQAIKFGLASDS----FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA--VTLVNVLTARARARDLRTV 214 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a 214 (323)
+...++.+.+.. |+. ...-.+-..+...| ++++|...|+........|+. ...-.+...+...|++++|
T Consensus 30 ~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g---~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 30 AEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQG---DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred HHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 555666666543 222 22333456777778 668999999998886633332 2444466778888999999
Q ss_pred HHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 215 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
...++......+ ....+...=+.|.+.|+.++|...|++
T Consensus 105 l~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 105 LATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999877544333 344566777789999999999998875
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.97 E-value=0.13 Score=42.18 Aligned_cols=146 Identities=15% Similarity=0.022 Sum_probs=102.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 172 (323)
-+-.|...|+++.+..-.+.+.. |. ..|+ ..++ +...++...+.. ..|...|..|-..|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~~~~-------~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g- 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-HQFA-------SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN- 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-cccc-------CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC-
Confidence 34578899998886433322211 11 1111 1222 333344444433 356788999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH-hccCC--hHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR-ARARD--LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
++++|...|++..... .-+...+..+-.++ ...|+ .++|..++++..+.+- -+...+..+-..+.+.|++++|
T Consensus 88 --~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 88 --DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred --CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHH
Confidence 6699999999887754 23667777777764 67677 5999999999988752 2567888888899999999999
Q ss_pred HHHHHhccCC
Q 040801 250 WDLFVKMLFP 259 (323)
Q Consensus 250 ~~~~~~m~~~ 259 (323)
...|+++.+.
T Consensus 164 i~~~~~aL~l 173 (198)
T PRK10370 164 IELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhh
Confidence 9999999775
No 89
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.043 Score=49.51 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=130.5
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCC-----------ccch-hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHH
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDP-----------CADY-HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFY 113 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~-----------y~~~-~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 113 (323)
..|++++|...+.+......+-.. .++. +|++.|-.+. .-+..+.-.+-..|-...++.+|.+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 457888888888877655432211 1222 7777776665 556666666777888888999999887
Q ss_pred HHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 040801 114 HEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 114 ~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~ 188 (323)
-+ ...+.| |....+.|-..|-+.|+ |.+.+-+ ....-| +..+..=|-.-|.... -+++++..|+.-.-
T Consensus 582 ~q--~~slip~dp~ilskl~dlydqegdksqafq~~yd--syryfp~nie~iewl~ayyidtq---f~ekai~y~ekaal 654 (840)
T KOG2003|consen 582 MQ--ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYD--SYRYFPCNIETIEWLAAYYIDTQ---FSEKAINYFEKAAL 654 (840)
T ss_pred HH--hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhh--cccccCcchHHHHHHHHHHHhhH---HHHHHHHHHHHHHh
Confidence 44 444445 56777888888888888 4444333 333334 4444444555566655 55899999987543
Q ss_pred cCCCCChHHHHHHHHHHh-ccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC
Q 040801 189 ENVKPNAVTLVNVLTARA-RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245 (323)
Q Consensus 189 ~g~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 245 (323)
+.|+.+-|..+|..|. +.|++.+|..+++...++ ++-|.....-|++.+...|.
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 7899999999998887 579999999999998765 56677777888887777663
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.92 E-value=0.2 Score=42.07 Aligned_cols=162 Identities=10% Similarity=-0.062 Sum_probs=109.2
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
.+..+...+...|+++.|...+++.....- + .+ ....+..+-..+.+.|++++|.+.|++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p--~---------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYP--F---------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455566677788889999998888876531 0 11 12456777788899999999999999997
Q ss_pred HCCCCCCcc----cHHHHHHHhcch--------hh---HHHHHHHHHHcCCCCchH-HH-----------------HHHH
Q 040801 118 VQGLIPDRF----MFPSLFKSCADI--------YV---EKQLHSQAIKFGLASDSF-LH-----------------NTLI 164 (323)
Q Consensus 118 ~~g~~p~~~----ty~~ll~~~~~~--------~~---a~~~~~~m~~~g~~~~~~-~~-----------------~~li 164 (323)
+. .|+.. ++..+-.++.+. |+ |.+.++.+.+.. |+.. .+ -.+-
T Consensus 98 ~~--~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 98 RL--HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred HH--CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 23322 222222222221 33 777777776653 3321 11 1344
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
..|.+.| ++++|...+++..... -......+..+..++...|+.++|...++.+...
T Consensus 174 ~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRG---AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcC---ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888 6699999999988753 1224578889999999999999999998887654
No 91
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.88 E-value=0.24 Score=45.87 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHh-ccCCCCchhhh-HHHhhh
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLFVK-MLFPWNNYGQW-AMSATV 272 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~-~~~~~~ 272 (323)
.+|...++.--+..-+..|..+|.++.+.+..+ ++.+++++|.-||. ++.+-|.++|+- |+.-|+.|..- .|+..+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 456677777778888999999999998887777 88899999998876 567888999985 44446666555 777777
Q ss_pred ccCCCCCcchhh-hhhhCC-CCchhHHHHHHHHHh
Q 040801 273 GPQGLVGRHSTA-HQISGP-CPKKAHKLFFFSMLK 305 (323)
Q Consensus 273 ~~~~~~~~~~~a-~~l~~~-~~~~~~~~~~~~M~~ 305 (323)
...++-.++... +.++.. .+-....++++.|++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 777765554322 333322 222233455566654
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.88 E-value=0.0037 Score=43.42 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
++++|+.+|+++....- .++...+-.+-.++.+.|++++|..+++. .+ ..++ ....-.+-.+|.+.|++++|.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67899999999988653 23455566688999999999999999988 32 2332 23344557789999999999999
Q ss_pred HHh
Q 040801 253 FVK 255 (323)
Q Consensus 253 ~~~ 255 (323)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
No 93
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.042 Score=46.27 Aligned_cols=152 Identities=9% Similarity=-0.013 Sum_probs=87.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHHHHHHHHHHHhc--CCC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFLHNTLINMYSSC--WCL 173 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~ 173 (323)
...|+..|++++|++.... |-..+....+.-|..-...-+ |++.++.|.+.. +-.|.+.|-.++.+. |..
T Consensus 115 a~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 3467778888888877655 222233333333332222233 777777776643 445555555555442 111
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH-HHHHHHHHhcCCHHHHHHH
Q 040801 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK-TTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~ 252 (323)
...+|+-+|++|-+ ...|+..+.+-...++...|++++|+.++++...+.-+ ++.+. |.++.+.-...+.+-..+.
T Consensus 188 -k~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 188 -KIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred -hhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 45788888888754 25678888888888888888888888888888765433 23333 3333333333344444555
Q ss_pred HHhccC
Q 040801 253 FVKMLF 258 (323)
Q Consensus 253 ~~~m~~ 258 (323)
+..++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 555544
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.77 E-value=0.33 Score=42.52 Aligned_cols=125 Identities=10% Similarity=-0.136 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC-chHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFLHNTLINM 166 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~~~li~~ 166 (323)
..|..+=..|.+.|+.++|...|++..+.. +-+...|+.+-..+...|+ |...++...+.. | +...|..+-..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 456666678889999999999999987752 2345778888888888888 888888877654 5 35677788888
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
+...| ++++|.+.|+.-... .|+..........+...++.++|...++....
T Consensus 142 l~~~g---~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 142 LYYGG---RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHCC---CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888 669999999998764 35443222222234466789999999977654
No 95
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.76 E-value=0.023 Score=49.36 Aligned_cols=143 Identities=12% Similarity=0.098 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCcccHHHHHHHhc-chhh-HHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCA-DIYV-EKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~ll~~~~-~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
.+|-.+|+..-+.+..+.|..+|++-++.+ +..+.....++|..++ +..+ |.++|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 468899999999999999999999998653 5566777777786664 4444 99999998765 456778899999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIENVKPNA---VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 240 (323)
.+.| +.+.|..+|++.... +.++. ..|...|+-=.+.|+++.+..+.+++.+. .|+......+++-|
T Consensus 81 ~~~~---d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLN---DINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT----HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhC---cHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9998 669999999998754 33322 59999999889999999999999999875 45555555555544
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.73 E-value=0.06 Score=39.50 Aligned_cols=98 Identities=7% Similarity=-0.154 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC--CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc--cChhhHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV--KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW--SHVELKT 234 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~ 234 (323)
++-.+...+.+.| ++++|.+.|++.....- ......+..+...+.+.|+++.|...++.+.+..-. .....+.
T Consensus 4 ~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAG---DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4566677788888 67999999999986431 112346667888999999999999999999875311 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+..+|.+.|+.++|...++++.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7888899999999999999998876
No 97
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.62 E-value=0.01 Score=50.28 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC-------------ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-------------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 207 (323)
....+..|.+.|++.|..+|+.||+.+=|..-.. +-+-+++++++|...|+.||..+--.|++++++
T Consensus 91 Iy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 91 IYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 4455678899999999999999999887654333 445678889999989999999998899999888
Q ss_pred cCCh-HHHHHHHHHHH
Q 040801 208 ARDL-RTVKRVHKCVD 222 (323)
Q Consensus 208 ~~~~-~~a~~~~~~m~ 222 (323)
.+-. .+..++.-.|-
T Consensus 171 ~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 171 WNFPTKKVKRMLYWMP 186 (406)
T ss_pred ccccHHHHHHHHHhhh
Confidence 7643 33444444443
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.61 E-value=0.21 Score=41.89 Aligned_cols=155 Identities=12% Similarity=-0.068 Sum_probs=105.5
Q ss_pred HHHHHHhcchhhHHHHHHHHHHcCCC--CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHh
Q 040801 129 PSLFKSCADIYVEKQLHSQAIKFGLA--SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206 (323)
Q Consensus 129 ~~ll~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 206 (323)
..+-+.+.-.|++..-...+.+..+. -|...-+.+.....+.| ++.+|+..|++..... .+|..+|+-+=-+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG---NFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc---chHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 33444445555533333334343333 34456666888889999 6689999998876543 678899999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCCCCCcchhhhh
Q 040801 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQ 286 (323)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (323)
+.|+++.|..-+.+..+... -+...+|.|--.|.-.|+.++|..++......+. .+.-.-.......+..|+..+|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999998877532 2456677777778888999999999998876532 122223333334555677777877
Q ss_pred hhC
Q 040801 287 ISG 289 (323)
Q Consensus 287 l~~ 289 (323)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 654
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.61 E-value=0.21 Score=47.21 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
++.-|-..|-..| +.++|++++++-.+. .|+ +..|.+--+.+-+.|++.+|...++...+... -|...-+--+
T Consensus 196 ~~~~lAqhyd~~g---~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLG---DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHH
Confidence 3355566677777 668888888877764 455 56777777888888888888888888877652 3666777777
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC
Q 040801 238 DAYCKCKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~~~~ 260 (323)
..+.|+|++++|.+++....+.+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCC
Confidence 88888888888888888887664
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.59 E-value=0.42 Score=46.87 Aligned_cols=239 Identities=8% Similarity=-0.032 Sum_probs=139.3
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC----CCChh----hH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS----NPTIY----TC 93 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~----~~~~~----~~ 93 (323)
+..-|-.+-....+.|.++.|.-+|...++.. |+. |.+. .|.+-|.++- +.|.. .-
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 34455666666666666777777777666652 333 2222 5555555543 22222 22
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHH---------
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIV-QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH--------- 160 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~--------- 160 (323)
-.+++.|...++-+.|++.++.-.. .+-..+...++++...+.+... +......+.....++|..-|
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 3345667777777888888877655 2334455556666665555554 43333333332112221111
Q ss_pred -------------H----HHHHHHHhcCCCCChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q 040801 161 -------------N----TLINMYSSCWCLDQPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 161 -------------~----~li~~~~~~g~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
+ -++-++.... ..+...-+..-..... +.-+...|.-+.+++...|.++.|..++..+
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~---~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLK---ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhccc---ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 1222222222 1222333333333344 4446678888889999999999999999998
Q ss_pred HHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCC
Q 040801 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVG 279 (323)
Q Consensus 222 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~ 279 (323)
......-+...|--+-.+|-..|..++|.+.+++.... +...+.- ++...+...|+..
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 87655556788888899999999999999999988765 3333333 6666666665533
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.11 Score=43.76 Aligned_cols=148 Identities=11% Similarity=-0.096 Sum_probs=97.1
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 040801 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 109 A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~ 188 (323)
--++++++...-..-+......-...|++.++-.+.++.... |-..+....|.-| +.+.. ..+-|.+.++.|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI--~lk~~---r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQI--LLKMH---RFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHc
Confidence 344556665554444434444445556777773333333333 3334444444333 23333 45889999999985
Q ss_pred cCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCch
Q 040801 189 ENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNY 263 (323)
Q Consensus 189 ~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~ 263 (323)
--+..|.+-|.+++.+ .+.+..|..+|++|.++ ..|+..+-+....++...|++++|+.++++...+ ..+|
T Consensus 166 ---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 166 ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred ---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 3466777777776654 45688999999999874 5789999999999999999999999999998876 3344
Q ss_pred hhh
Q 040801 264 GQW 266 (323)
Q Consensus 264 ~~~ 266 (323)
...
T Consensus 242 etL 244 (299)
T KOG3081|consen 242 ETL 244 (299)
T ss_pred HHH
Confidence 443
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.083 Score=51.97 Aligned_cols=210 Identities=10% Similarity=0.011 Sum_probs=147.0
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCC---ccch-----------hHHHhcccCC---CCChhhHHHHHHHHHhCCC
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP---CADY-----------HVRLVFSQIS---NPTIYTCNSIVRGYTNKNL 105 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---y~~~-----------~a~~lf~~m~---~~~~~~~~~li~~~~~~g~ 105 (323)
+-..+-.-++++.|.+++....+. .|+- |-+. +|-..+++.. ..|...++.+=..+.+...
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 444444556888899999888765 3333 2222 5666666554 4455555555557888888
Q ss_pred hHHHHHHHHHHHHCC-CCCCcccHHHHHHHhcc-------hhh--------HHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 106 HHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCAD-------IYV--------EKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 106 ~~~A~~~~~~m~~~g-~~p~~~ty~~ll~~~~~-------~~~--------a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
+.-|.+-|+...+.- ..+|.++.-.|=+.|.. .+. |.++|....+.. .-|.+.-|-+=-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888777765432 22454444444332221 111 777777776654 3466777777777888
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCccChhhHHHHHHHHHhcCCHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE-SGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
+| ++.+|.++|.+..+... -+..+|-.+-+.|...|++..|.++|+...+ .+-.-+..+.++|-+++-++|.+.+
T Consensus 659 kg---~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 659 KG---RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred cc---CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 88 55899999999988664 3667888999999999999999999998865 4444568888999999999999999
Q ss_pred HHHHHHhccCC
Q 040801 249 AWDLFVKMLFP 259 (323)
Q Consensus 249 a~~~~~~m~~~ 259 (323)
|.+.+-.....
T Consensus 735 ak~~ll~a~~~ 745 (1018)
T KOG2002|consen 735 AKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh
Confidence 99988776544
No 103
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.41 Score=43.80 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=43.2
Q ss_pred hHHHhccc-CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 040801 77 HVRLVFSQ-IS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132 (323)
Q Consensus 77 ~a~~lf~~-m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll 132 (323)
.|+++|.. |. +|+...|++.|+.=.+-+.++.|..+|+...- +.|++.+|--..
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikya 214 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYA 214 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHH
Confidence 78888865 44 99999999999999999999999999988754 347666655443
No 104
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.18 Score=46.19 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=71.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
|..+|-+==+.+.-.+++++|..=|++-++ +.| +...|..+--+.-+.+. ++..|++.++. +.-.+-+||-.-
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 344444444444444555555555554443 122 12223222222223333 55555555432 333344555555
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcC-----CC--CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIEN-----VK--PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g-----~~--p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
..+...+ ++++|++-|+.-.+.. +- +....--.++-.= -.+++..|..+++...+..- -....|.+|-
T Consensus 470 eiLtDqq---qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dp-kce~A~~tla 544 (606)
T KOG0547|consen 470 EILTDQQ---QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDP-KCEQAYETLA 544 (606)
T ss_pred HHHhhHH---hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCc-hHHHHHHHHH
Confidence 5555555 4456666665554311 10 1111111111111 22556666666665554421 1234556666
Q ss_pred HHHHhcCCHHHHHHHHHhc
Q 040801 238 DAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m 256 (323)
..-...|++++|.++|++-
T Consensus 545 q~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 6666666666666666654
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.028 Score=49.16 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=103.5
Q ss_pred hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcch--hh----------HHHH
Q 040801 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YV----------EKQL 144 (323)
Q Consensus 77 ~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~--~~----------a~~~ 144 (323)
.|++++-.+-+.=+..--.|+--|.+.+++.+|..+.+++.- ..| |.-++++.... |. |.+.
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP----~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP----YEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CCh----HHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 455555433322223334566678899999999998877642 223 55555554332 22 7777
Q ss_pred HHHHHHcCCCCchHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 145 HSQAIKFGLASDSFLHNTLINM-YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 145 ~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
|+..-+.+.+-|+..-..-+.+ +.-.- ++|+++-.++....-=..-|.+-|| +.++.+..|...+|+++|-.+..
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~---qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSF---QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC
Confidence 7776666665554433222222 22222 4577777777776544444555554 67788888888888888877655
Q ss_pred hCCccChhhHH-HHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 224 SGFWSHVELKT-TLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 224 ~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..++ |..+|. .|.++|.++++.+-|++++-++...
T Consensus 422 ~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~ 457 (557)
T KOG3785|consen 422 PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP 457 (557)
T ss_pred hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc
Confidence 4443 445554 4556788888888888877776543
No 106
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.48 E-value=0.076 Score=46.38 Aligned_cols=193 Identities=10% Similarity=0.140 Sum_probs=118.7
Q ss_pred CchHHHHHHHHHHH-hcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCcccH
Q 040801 52 TMRELKQIHAQMLR-TSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN--KNLHHEAFLFYHEMIVQGLIPDRFMF 128 (323)
Q Consensus 52 ~~~~a~~i~~~m~~-~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~ty 128 (323)
+.+.-..+-+.+++ .|+ |+........++.+++..-.. ...+++.+++++.|++.|++-+..+|
T Consensus 34 d~~~~~~~~~~IK~~t~~-------------fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~ 100 (297)
T PF13170_consen 34 DAERFKEISKYIKKNTGW-------------FSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLY 100 (297)
T ss_pred CHHHHHHHHHHHHHcccc-------------cccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHH
Confidence 45555555555555 232 333333344445555544333 12266778899999999999999888
Q ss_pred HHHHHHhcc--hhh-------HHHHHHHHHHcCC---CCchHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHcCCCCCh
Q 040801 129 PSLFKSCAD--IYV-------EKQLHSQAIKFGL---ASDSFLHNTLINMYSSCWCLD-QPDEAIKIFYRMEIENVKPNA 195 (323)
Q Consensus 129 ~~ll~~~~~--~~~-------a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~-~~~~a~~~~~~m~~~g~~p~~ 195 (323)
-+..-.... ..+ +..+++.|++... .++-+++..|+.. ...+.+ -.+.+.+.|+.+...|+..+-
T Consensus 101 laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn 178 (297)
T PF13170_consen 101 LAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGN 178 (297)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 874444433 122 9999999998753 4667888888766 333222 346778888888887876533
Q ss_pred -HHHHHHHHHHhcc-CC--hHHHHHHHHHHHHhCCccChhhHHHH-HHHHHhcCC---HHHHHHHHHhccCC
Q 040801 196 -VTLVNVLTARARA-RD--LRTVKRVHKCVDESGFWSHVELKTTL-MDAYCKCKF---VSRAWDLFVKMLFP 259 (323)
Q Consensus 196 -~t~~~li~~~~~~-~~--~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~---~~~a~~~~~~m~~~ 259 (323)
.-+.+-|-+++.. .+ +..+..+++.+.+.|+++....|..+ +-++...+. +++..++.+.+.+.
T Consensus 179 ~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 179 DLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 2333333344433 22 44678889999999999988877644 223344444 55556666666554
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.42 E-value=0.21 Score=40.98 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=20.4
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
+.|...|..+-..|...|++++|.+.|++-.+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666665544
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.41 E-value=0.08 Score=50.52 Aligned_cols=202 Identities=11% Similarity=0.014 Sum_probs=123.1
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--ccch----hHHHhcc-cCC-CCChhhHHHHHHHHHhCCChHHHHHH
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--CADY----HVRLVFS-QIS-NPTIYTCNSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--y~~~----~a~~lf~-~m~-~~~~~~~~~li~~~~~~g~~~~A~~~ 112 (323)
..+...+.++|-..+|..|++..-.-. |-. |... .|.++.. ++. +||...|..+-+......-+++|+++
T Consensus 402 ~~laell~slGitksAl~I~Erlemw~--~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEMWD--PVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHHHH--HHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHH
Confidence 456667888888899998888653221 111 2222 3333332 223 55666666666666665666666666
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 040801 113 YHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189 (323)
Q Consensus 113 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 189 (323)
.+....+. ...++.++ .+.++ +.+.++.-.+.. .....+|-.+=.+.-+.+ +++.|.+-|..-..
T Consensus 480 sn~~sarA----~r~~~~~~---~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle---k~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 480 SNYISARA----QRSLALLI---LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE---KEQAAVKAFHRCVT- 547 (777)
T ss_pred hhhhhHHH----HHhhcccc---ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh---hhHHHHHHHHHHhh-
Confidence 65543220 00001000 11222 333333322221 012233333333344444 66888888877664
Q ss_pred CCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 190 NVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 190 g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
..|| ...||++-.+|.+.++-.+|...+.+..+.. .-+-..|...+..-.+.|.+++|.+.++.+..
T Consensus 548 -L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 -LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 3454 5789999999999999999999999999887 44577888888899999999999999998754
No 109
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.40 E-value=0.019 Score=43.29 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCccChhhHHHHHH
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDE-SGFWSHVELKTTLMD 238 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~ 238 (323)
|+..+..+++.+|+..+++..|.++.+...+ -+++.+..+|..|++
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555555555555555555555554432 234444444444444
No 110
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.38 E-value=0.66 Score=44.23 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=104.9
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-----------ccch-hHHHhcccCC---CCChhhHHHHHHHHHhCC
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-----------CADY-HVRLVFSQIS---NPTIYTCNSIVRGYTNKN 104 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-----------y~~~-~a~~lf~~m~---~~~~~~~~~li~~~~~~g 104 (323)
|..-...|.+.+-++-|+.||....+--....+ |++. ....+|++.. +.....|-...+.+-..|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 333444555555667777777766654221111 3333 3444444432 334455666666666777
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHH
Q 040801 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIK 181 (323)
Q Consensus 105 ~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~ 181 (323)
++-.|..++...-+..- -+...|-.-++.-..+.. |..++...... .|+..+|.--++.--..+ +.++|.+
T Consensus 599 dv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld---~~eeA~r 672 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD---NVEEALR 672 (913)
T ss_pred CcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh---hHHHHHH
Confidence 77777777766655321 133445555555554444 66666665553 355555544444333333 4467777
Q ss_pred HHHHHHHcCCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 182 IFYRMEIENVKPNAV-TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 182 ~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
++++-.. .-|+-. .|..+=+.+-+.++++.|...|..=.+ .++-.+..|-.|.+.=-+.|.+-+|..++++-+-+
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 7755543 223332 232222333334444444433332111 12223445555555555566666666666655543
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.31 E-value=1.1 Score=44.06 Aligned_cols=206 Identities=11% Similarity=0.071 Sum_probs=132.9
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCC-ccch-------------hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHH
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDP-CADY-------------HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFL 111 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~-y~~~-------------~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 111 (323)
..+++..|.+-.+.+.++ .|+. |++. +|.++++... ..|..+-..+-.+|.+.|+.++|..
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 345667777777766655 4444 3333 6777776654 5588889999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcchhh-------HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC-------ChH
Q 040801 112 FYHEMIVQGLIPDRFMFPSLFKSCADIYV-------EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD-------QPD 177 (323)
Q Consensus 112 ~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-------~~~ 177 (323)
+|+...+. -|+..-...+..+|.+.+. |.+++. .+.-+.+.+=++|+.+...-.-. -.-
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99988764 5778888899999999888 444444 22233444445555554432111 112
Q ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHHHhccCChHHHHHHHHH-HHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 178 EAIKIFYRMEIEN-VKPNAVTLVNVLTARARARDLRTVKRVHKC-VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 178 ~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
-|.+.++.+..++ -.-+..-.-.-+..+-..|..++|..++.. ..+.-..-+...-+--++.+.+.+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3444555555443 222333333333444567789999998843 33443333455556677888999999999999888
Q ss_pred ccCCCCch
Q 040801 256 MLFPWNNY 263 (323)
Q Consensus 256 m~~~~~~~ 263 (323)
+..++++.
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 88886554
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.30 E-value=0.18 Score=38.07 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
.....+...+...|++++|.+.|+.....+ +.+...+..+-..+.+.|+ |...++...+.+ ..+...+..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344455566666777777777776665532 1233344444444444444 444444444332 12233344444444
Q ss_pred HhcCCCCChHHHHHHHHHHHH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~ 188 (323)
...| +.++|++.|++..+
T Consensus 96 ~~~g---~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALG---EPESALKALDLAIE 113 (135)
T ss_pred HHcC---CHHHHHHHHHHHHH
Confidence 4444 33555555544443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.30 E-value=0.15 Score=39.41 Aligned_cols=63 Identities=6% Similarity=-0.033 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
...|..+-..+.+.| ++++|...|+...... ..+...+..+-.++...|+.++|...++...+
T Consensus 58 ~~a~~~lg~~~~~~g---~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 58 WRAHIALAGTWMMLK---EYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444 3345555555544422 22344444444455555555555555555444
No 114
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.21 E-value=0.027 Score=42.47 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHH---------------HhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVD---------------ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
|..++.++|.++++.|+++....+.+..- .....|+..+..+++.+|+.+|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45677778888888888887777776552 123568899999999999999999999999999877
Q ss_pred C
Q 040801 259 P 259 (323)
Q Consensus 259 ~ 259 (323)
.
T Consensus 81 ~ 81 (126)
T PF12921_consen 81 K 81 (126)
T ss_pred H
Confidence 6
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.12 Score=44.44 Aligned_cols=206 Identities=14% Similarity=0.095 Sum_probs=124.5
Q ss_pred HhhcCCCchHHHHHHHHHHHhc-CCCCC--------ccch---hHHHhcccCC-CCChhhHHHHHHHHHhCCChHHHHHH
Q 040801 46 SLEKCSTMRELKQIHAQMLRTS-LFFDP--------CADY---HVRLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 46 ~~~~~~~~~~a~~i~~~m~~~~-~~~~~--------y~~~---~a~~lf~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~ 112 (323)
++-+.+.+.+|+.+...|.+.. +.... |+.. .++.+.++.+ +-+..+-+..=--..+.|+++.|++-
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 4445566666766666655421 10000 5544 5666677766 33444333333344578999999999
Q ss_pred HHHHHH-CCCCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCCCC-------------ch--------HHHHHHHHHH-
Q 040801 113 YHEMIV-QGLIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGLAS-------------DS--------FLHNTLINMY- 167 (323)
Q Consensus 113 ~~~m~~-~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~-------------~~--------~~~~~li~~~- 167 (323)
|.+-.+ .|..| ...|+..+-.|.+... |.++..++.++|++- |+ ..-+.++.++
T Consensus 167 FqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 988766 55655 5789988888877666 889999988887632 21 1123344333
Q ss_pred ------HhcCCCCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHH
Q 040801 168 ------SSCWCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240 (323)
Q Consensus 168 ------~~~g~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 240 (323)
-+.| +++.|.+-+.+|--+ .-+.|.+|...+.-.=. .+++....+=+..+.+..- .-..||..++-.|
T Consensus 246 LKaAIeyq~~---n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 246 LKAAIEYQLR---NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhcc---cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 3334 667777777777432 23457777665543322 2334444444444444432 3467888888889
Q ss_pred HhcCCHHHHHHHHHhcc
Q 040801 241 CKCKFVSRAWDLFVKML 257 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~ 257 (323)
||+.-++-|-.++.+=.
T Consensus 321 CKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENA 337 (459)
T ss_pred hhhHHHhHHHHHHhhCc
Confidence 99999998888877644
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.16 E-value=0.025 Score=37.17 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=36.7
Q ss_pred hccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...|++++|..+++.+.+.. +-+...+-.+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34677777888877776653 225666667777888888888888888877765
No 117
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.31 Score=44.68 Aligned_cols=149 Identities=14% Similarity=0.069 Sum_probs=108.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCCCChH
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQPD 177 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~ 177 (323)
-.|+...|.+-|+..+...-.++.. |--+-..|....+ .++.|+...+.. -.||++....-|..... +++
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~-----q~e 411 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ-----QYE 411 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-----HHH
Confidence 3588889999999988765444332 5555556666666 777777776655 34566555555555444 779
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+|..=|++-.... .-+...|.-+--+.-+.+.++.++..|++.+++ ++-.+.+|+-.-..+...+++++|.+-|+...
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999998887633 224456655555556888999999999998775 56668999999999999999999999999765
Q ss_pred C
Q 040801 258 F 258 (323)
Q Consensus 258 ~ 258 (323)
+
T Consensus 490 ~ 490 (606)
T KOG0547|consen 490 E 490 (606)
T ss_pred h
Confidence 4
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.14 E-value=0.28 Score=44.84 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHH-HHHhcchhh---HHHHHHHHHHcCCCCc-hHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL-FKSCADIYV---EKQLHSQAIKFGLASD-SFLHNTLIN 165 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~~~---a~~~~~~m~~~g~~~~-~~~~~~li~ 165 (323)
.-|..-+..| ..|++++|+..+..+... .||...|..+ ...+.+.++ |.+.++.+... .|+ ....-.+-.
T Consensus 308 a~YG~A~~~~-~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTY-LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHH-HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHH
Confidence 3355555544 789999999999998765 4555555444 555666666 66767666654 466 566677888
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 245 (323)
+|.+.| ++.+|+++++...... +-|...|..|-++|...|+..++..... ++|...|+
T Consensus 383 all~~g---~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~ 440 (484)
T COG4783 383 ALLKGG---KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGR 440 (484)
T ss_pred HHHhcC---ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCC
Confidence 899999 6689999999987654 6689999999999999999998865544 45677899
Q ss_pred HHHHHHHHHhccCC
Q 040801 246 VSRAWDLFVKMLFP 259 (323)
Q Consensus 246 ~~~a~~~~~~m~~~ 259 (323)
++.|...+...+++
T Consensus 441 ~~~A~~~l~~A~~~ 454 (484)
T COG4783 441 LEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887765
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.12 E-value=0.4 Score=47.07 Aligned_cols=158 Identities=11% Similarity=-0.008 Sum_probs=117.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCccc-HHHHHHHhcchhh---HHHHHHHHHHcCCCCc-hHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM-FPSLFKSCADIYV---EKQLHSQAIKFGLASD-SFLHN 161 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-y~~ll~~~~~~~~---a~~~~~~m~~~g~~~~-~~~~~ 161 (323)
..++..+-.|-....+.|.+++|.++++...+ +.||... ...+...+.+.++ |....+...+.. |+ ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 34577788888899999999999999999887 4676643 4445555666666 777777776654 54 55567
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 241 (323)
.+-.++.+.| ++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.- .+...-|+.++
T Consensus 159 ~~a~~l~~~g---~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~---- 229 (694)
T PRK15179 159 LEAKSWDEIG---QSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL---- 229 (694)
T ss_pred HHHHHHHHhc---chHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH----
Confidence 7778888888 6699999999998743 2347888889999999999999999999997652 34445666544
Q ss_pred hcCCHHHHHHHHHhccCC
Q 040801 242 KCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~~ 259 (323)
+++..-..+++++.-.
T Consensus 230 --~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 230 --VDLNADLAALRRLGVE 245 (694)
T ss_pred --HHHHHHHHHHHHcCcc
Confidence 4556667777777544
No 120
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.04 E-value=1.4 Score=41.91 Aligned_cols=107 Identities=11% Similarity=0.034 Sum_probs=75.6
Q ss_pred hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCcccHHHHHHHhcchhh------HHHH
Q 040801 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ------GLIPDRFMFPSLFKSCADIYV------EKQL 144 (323)
Q Consensus 77 ~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~ty~~ll~~~~~~~~------a~~~ 144 (323)
.+.+++..-.+.++..-+-.|..+++.+++++|-+.++..... .-+-+...|..+....++..+ +..+
T Consensus 156 ts~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 156 TSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH
Confidence 5566666555666666788899999999999999998877542 244566677777777776666 4554
Q ss_pred HHHHHHcCCCCc--hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 040801 145 HSQAIKFGLASD--SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 145 ~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~ 188 (323)
+..+... -+| ...|++|-+-|.+.| .+++|.++|++-.+
T Consensus 236 iR~gi~r--ftDq~g~Lw~SLAdYYIr~g---~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 236 IRGGIRR--FTDQLGFLWCSLADYYIRSG---LFEKARDVYEEAIQ 276 (835)
T ss_pred HHhhccc--CcHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Confidence 4444332 234 467999999999999 45788888877654
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.01 E-value=0.33 Score=37.47 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC--hhh
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP--NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH--VEL 232 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~ 232 (323)
...|..++..+. .+ +...+.+.++.+....-.- .....-.+-..+...|++++|...|+.+.+..-.|+ ...
T Consensus 12 ~~~y~~~~~~~~-~~---~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 12 SALYEQALQALQ-AG---DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 456777777775 55 5688888898888754221 123333455788899999999999999998763332 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh-HHHhhhccCC
Q 040801 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQG 276 (323)
Q Consensus 233 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~~~ 276 (323)
.-.|...+...|++++|...++........+..+ ....++...|
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCC
Confidence 4567788999999999999998866554444444 4444444444
No 122
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.96 E-value=1.1 Score=39.98 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+..+-..|...|++++|.+++++..
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 334444444445555555555544443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.92 E-value=0.49 Score=39.79 Aligned_cols=159 Identities=12% Similarity=-0.020 Sum_probs=101.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
.-+=..+--.|+-+.+..+....... -.-|........+...+.|+ |...+.+..... .+|...||.+=-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555566666666554443211 12233344446677777777 666666665533 56777888888888888
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 250 (323)
| ++++|..-|.+-.+-. .-+...+|.+--.+.-.|+.+.|+.++......+ .-|...-..|.-+....|++++|+
T Consensus 148 G---r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 G---RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred c---ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence 8 4477777777666532 1244566777777777788888888888777654 225666677777788888888888
Q ss_pred HHHHhccCC
Q 040801 251 DLFVKMLFP 259 (323)
Q Consensus 251 ~~~~~m~~~ 259 (323)
.+...-...
T Consensus 223 ~i~~~e~~~ 231 (257)
T COG5010 223 DIAVQELLS 231 (257)
T ss_pred hhccccccc
Confidence 877655543
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.88 E-value=0.43 Score=37.98 Aligned_cols=99 Identities=12% Similarity=-0.039 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN--AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
...+..+-..|...| ++++|...|++....+..+. ...+..+-..+.+.|+.++|...+.+..+.. +-+...+.
T Consensus 35 a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADG---EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 455677777788888 66899999988876432222 4677788888889999999999988887752 12355566
Q ss_pred HHHHHHHhcCC--------------HHHHHHHHHhccCC
Q 040801 235 TLMDAYCKCKF--------------VSRAWDLFVKMLFP 259 (323)
Q Consensus 235 ~li~~~~~~g~--------------~~~a~~~~~~m~~~ 259 (323)
.+...|...|+ +++|.+++++....
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 66667777776 45566666555543
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.86 E-value=0.54 Score=46.17 Aligned_cols=96 Identities=8% Similarity=0.054 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELK 233 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 233 (323)
++..+--|-......|+ .++|..+++...+ ..||. .....+...+.+.+.+++|....+...+. .|+ ....
T Consensus 85 ~~~~~~~La~i~~~~g~---~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHR---SDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCC---cHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 34445555555555552 2555555555544 23332 34444555555555555555555555544 233 2233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 234 TTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 234 ~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
..+-.++.+.|+.++|..+|++...
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3444455555555555555555554
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.74 E-value=0.048 Score=35.82 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=48.0
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
+.| ++++|+++|++.....- -|...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 3 ~~~---~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQG---DYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTT---HHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hcc---CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 456 67999999999987652 26777778999999999999999999998876 46645555443
No 127
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.69 E-value=2.1 Score=40.94 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=128.0
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccch----------------------hHHHhcccCC--CCCh--hhH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADY----------------------HVRLVFSQIS--NPTI--YTC 93 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~----------------------~a~~lf~~m~--~~~~--~~~ 93 (323)
-.-+|..+++.+++++|.+.+...+...--.+.+++. ....++..+. -+|. ..|
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHH
Confidence 4667788888888888888887765333211112222 3334444433 2233 459
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--HHHHHHHHH--HcCCCCchH-------HHHH
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQAI--KFGLASDSF-------LHNT 162 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~--~~g~~~~~~-------~~~~ 162 (323)
++|-+-|.+.|.+++|.++|++-.+. ..++.-|+.+..+|+.-.. .....+ +. +.|-.-+.. .+..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHH
Confidence 99999999999999999999997765 3455667888888776554 111111 11 112111111 1222
Q ss_pred HHHH-------HHhcCCCC--------------ChHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHhccCChHHHH
Q 040801 163 LINM-------YSSCWCLD--------------QPDEAIKIFYRMEIENVKP------NAVTLVNVLTARARARDLRTVK 215 (323)
Q Consensus 163 li~~-------~~~~g~~~--------------~~~~a~~~~~~m~~~g~~p------~~~t~~~li~~~~~~~~~~~a~ 215 (323)
||+. -+-..+.. +..+...++.+.... +.| -...|..+-.-|-..|+++.|.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 2211 11111010 345556666665432 222 2346777778888899999999
Q ss_pred HHHHHHHHhCCccC---hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 216 RVHKCVDESGFWSH---VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 216 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.+|+...+-.++-- ..+|...-++=.+..+++.|.++.++...
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 99998876544332 34566666666677788888888887643
No 128
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.67 E-value=0.051 Score=42.01 Aligned_cols=73 Identities=15% Similarity=0.038 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH-----HhCCccChh
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-----ESGFWSHVE 231 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~ 231 (323)
..+...++..+...| ++++|.++.+...... +.|...|..+|.++...|+...|.++|+.+. +.|+.|+..
T Consensus 62 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 62 LDALERLAEALLEAG---DYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445555666666666 5577777777766644 3466677777777777777777777776663 346666655
Q ss_pred hH
Q 040801 232 LK 233 (323)
Q Consensus 232 ~~ 233 (323)
+-
T Consensus 138 ~~ 139 (146)
T PF03704_consen 138 TR 139 (146)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 129
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=1.8 Score=40.60 Aligned_cols=208 Identities=15% Similarity=0.090 Sum_probs=123.1
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----ccch----------hHHHhcccCCCC---ChhhHHHHHHHHHhC
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----CADY----------HVRLVFSQISNP---TIYTCNSIVRGYTNK 103 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----y~~~----------~a~~lf~~m~~~---~~~~~~~li~~~~~~ 103 (323)
-.-|..+...|+..+..-+=..|++. .|+. |+-. +|++.|+.-... =...|-.+=..|+-.
T Consensus 282 ~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 282 PLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 33455666667766666666666655 3333 1111 788888765522 225677777788888
Q ss_pred CChHHHHHHHHHHHH--CC-CCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHH
Q 040801 104 NLHHEAFLFYHEMIV--QG-LIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 104 g~~~~A~~~~~~m~~--~g-~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
|..|+|+..|..--+ .| ..| ..|..+=-+..+.-+ |+++|.+... +.| |+.+.+-+=-..-..+ .+.+
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP--~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~---~y~~ 432 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLP--SLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYE---EYPE 432 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcch--HHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHh---hhHH
Confidence 888888877765433 12 233 223222222222222 7776665543 344 4555555444344344 4567
Q ss_pred HHHHHHHHHH--cCC----CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 179 AIKIFYRMEI--ENV----KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 179 a~~~~~~m~~--~g~----~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
|..+|+.-.. +.+ ..-..+++.|=.+|.+.+..++|...+++..... +-+..+|.++--.|...|+++.|.+.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 7777766552 111 1234456777777778888888888888776642 34667777777777888888888888
Q ss_pred HHhccC
Q 040801 253 FVKMLF 258 (323)
Q Consensus 253 ~~~m~~ 258 (323)
|++-..
T Consensus 512 fhKaL~ 517 (611)
T KOG1173|consen 512 FHKALA 517 (611)
T ss_pred HHHHHh
Confidence 887654
No 130
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.62 E-value=2.2 Score=40.84 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----------
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG----------- 225 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g----------- 225 (323)
.-.|-.|...=-+.| .+-.|..+|+.-..++ .-|...|-..|+.=.+.|+.+.|+.++.+..+..
T Consensus 719 ipLWllLakleEk~~---~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDG---QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhc---chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 344555655556666 4578888888877666 4478899999999999999999998888776531
Q ss_pred ------------------CccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCC-Cchhhh-HHHhhhccCCCCCcchhhh
Q 040801 226 ------------------FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW-NNYGQW-AMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 226 ------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~-~~~~~~~~~~~~~~~~~a~ 285 (323)
++.|.++.-++-..|-...++++|.+.|++..+.. ..-+.| -+......+|...+-.+..
T Consensus 795 ~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 34455555566666666777888888888877652 223455 3344444555444444443
Q ss_pred hh
Q 040801 286 QI 287 (323)
Q Consensus 286 ~l 287 (323)
..
T Consensus 875 ~~ 876 (913)
T KOG0495|consen 875 KK 876 (913)
T ss_pred HH
Confidence 33
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.60 E-value=0.61 Score=46.78 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=90.4
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-hcchhh---------------------HHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS-CADIYV---------------------EKQL 144 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~-~~~~~~---------------------a~~~ 144 (323)
..+...|-.||..+-+.+++++|.++.++-.+ ..|+...+-.+.-. +...++ ++.+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 56778899999999999999999999986544 34554433322222 111111 2222
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 145 HSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 145 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
...|...+ -+...+-.|-.+|-+.| +.+++..++++..+-. .-|....|.+-..+... ++++|.+++....+.
T Consensus 106 ~~~i~~~~--~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYG--ENKLALRTLAEAYAKLN---ENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhh--hhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 33333322 23356667788888888 6699999999999876 45788999999999988 999999998888765
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.49 E-value=0.19 Score=45.34 Aligned_cols=83 Identities=12% Similarity=-0.107 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
++++|++.|++..... .-+...|..+-.+|...|++++|...++.+.+.. +.+...|..+-.+|...|++++|...|+
T Consensus 17 ~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 17 DFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5567777777766543 2245566666666777777777777777766543 1234556666666777777777777777
Q ss_pred hccCC
Q 040801 255 KMLFP 259 (323)
Q Consensus 255 ~m~~~ 259 (323)
+..+.
T Consensus 95 ~al~l 99 (356)
T PLN03088 95 KGASL 99 (356)
T ss_pred HHHHh
Confidence 66543
No 133
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=2.2 Score=39.96 Aligned_cols=253 Identities=13% Similarity=0.035 Sum_probs=148.3
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhc-CCCCC--------ccch-------hHHHhcccCCCCChhhHHHHHHHHHhC
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTS-LFFDP--------CADY-------HVRLVFSQISNPTIYTCNSIVRGYTNK 103 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~-~~~~~--------y~~~-------~a~~lf~~m~~~~~~~~~~li~~~~~~ 103 (323)
......-+....++....++.+...+.. +.++- |-.. .++++.+.- +....+|=++=--|...
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 3445556667789999999999887653 33333 1111 333333332 33556777777777888
Q ss_pred CChHHHHHHHHHH--HHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHc--C-CCCchHHHHHHHHHHHhcCCCCC
Q 040801 104 NLHHEAFLFYHEM--IVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF--G-LASDSFLHNTLINMYSSCWCLDQ 175 (323)
Q Consensus 104 g~~~~A~~~~~~m--~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~g~~~~ 175 (323)
|+..+|.+.|.+- ......|-...|. ++++-.+. |...+...-+. | ..|. .|-.+= |.+.+ +
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fg---hsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlgme--y~~t~---n 395 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFG---HSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLGME--YMRTN---N 395 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHh---HHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHHHH--HHHhc---c
Confidence 9999999999774 3344555444444 44444444 44444433222 2 2343 343333 44555 5
Q ss_pred hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCcc----ChhhHHHHHHHHHhcCCHHH
Q 040801 176 PDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDES--GFWS----HVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~ 248 (323)
.+-|.++|.+-.. +.| |....+-+=-.....+.+.+|...|....+. ...+ -..+++.|=++|-+.++.++
T Consensus 396 ~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 6899999987654 555 4455555544444578888998888887621 1111 23457788889999999999
Q ss_pred HHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhh-hhhhCCCCch-hHHHHHHHHHh
Q 040801 249 AWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTA-HQISGPCPKK-AHKLFFFSMLK 305 (323)
Q Consensus 249 a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a-~~l~~~~~~~-~~~~~~~~M~~ 305 (323)
|...+++-... +.++..+ +....+...|+.+.+.+. .+-+..-+++ -+..++..+++
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999987654 3444444 444445555555444333 3444455554 33344444443
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.47 E-value=0.27 Score=33.29 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
|..+...+...|++++|.+++++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 29 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL 29 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 445566677778888888887777653
No 135
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.46 E-value=0.14 Score=39.50 Aligned_cols=70 Identities=14% Similarity=-0.066 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-----CCchhhh
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-----WNNYGQW 266 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~ 266 (323)
.+...++..+...|+.+.|..+...+.... +.|...|..+|.+|.+.|+..+|.++|+++.+. |..|...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 355667777888889999999988888764 447778889999999999999999998887543 6666654
No 136
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.43 E-value=1.1 Score=39.32 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCcccHH
Q 040801 53 MRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG---LIPDRFMFP 129 (323)
Q Consensus 53 ~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~ty~ 129 (323)
++....+++.|++.|+..+.|.-..|.-+..+.++.+. . -...+|.++|+.|++.- -.++..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~---~---------~~~~ra~~iy~~mKk~H~fLTs~~D~~~a 145 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDY---D---------EIIQRAKEIYKEMKKKHPFLTSPEDYPFA 145 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccH---H---------HHHHHHHHHHHHHHHhCccccCccchhHH
Confidence 56778999999999994444332222222222111110 0 12468999999998753 357788888
Q ss_pred HHHHHhcchhh-----HHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 040801 130 SLFKSCADIYV-----EKQLHSQAIKFGLASDSF-LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203 (323)
Q Consensus 130 ~ll~~~~~~~~-----a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 203 (323)
.+|..-.+.-+ ++..++.+.+.|+..+-. -+-+-|-+++....-+...++.++++.+.++|+++....|. +|.
T Consensus 146 ~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp-~lG 224 (297)
T PF13170_consen 146 ALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP-TLG 224 (297)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc-HHH
Confidence 88777444333 889999999989766433 34444444444332212357899999999999998888876 444
Q ss_pred HHhccCC-----hHHHHHHHHHHH
Q 040801 204 ARARARD-----LRTVKRVHKCVD 222 (323)
Q Consensus 204 ~~~~~~~-----~~~a~~~~~~m~ 222 (323)
.++-.++ ++....+.+.+.
T Consensus 225 lLall~~~~~~~~~~i~ev~~~L~ 248 (297)
T PF13170_consen 225 LLALLEDPEEKIVEEIKEVIDELK 248 (297)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHh
Confidence 4443333 334445555554
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.35 E-value=2.6 Score=42.03 Aligned_cols=217 Identities=9% Similarity=-0.006 Sum_probs=132.8
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-------ccch--------hHHHhcccCC--CCC--hhhHHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------CADY--------HVRLVFSQIS--NPT--IYTCNSI 96 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-------y~~~--------~a~~lf~~m~--~~~--~~~~~~l 96 (323)
++...+.|.+-+.--|+++.++.+..++......-.. ++|+ .|...|.+-. .+| +-.+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3445677888888889999999999988877632222 3333 5666665443 233 2334557
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-------HHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-------EKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
-+.|.+.|+++++...|+..... .+-+..|.-+|=..|...+. |..+.....+.- ..|...|-.+-..|-.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 88889999999999999888654 23344556555555555532 444444433322 2345555555555544
Q ss_pred cCCCCChHHHHHHHH----HHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCccChh-------hHHH
Q 040801 170 CWCLDQPDEAIKIFY----RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES---GFWSHVE-------LKTT 235 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~----~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~-------~~~~ 235 (323)
. ++..++..|. .+...+..+-....|.+-.-....|++.+|...|...... ...+|.. -||
T Consensus 427 ~----d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN- 501 (1018)
T KOG2002|consen 427 T----DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN- 501 (1018)
T ss_pred c----ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-
Confidence 3 3334455443 3334555577788888888888888888888888887654 2334432 222
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+-..+-..++.+.|.+.+..+.+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333444556777788888777765
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.25 E-value=0.66 Score=36.71 Aligned_cols=102 Identities=11% Similarity=-0.082 Sum_probs=71.4
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc
Q 040801 150 KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP--NAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227 (323)
Q Consensus 150 ~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 227 (323)
..+..-....|..+...+...| ++++|+..|++.......| ...+|..+-..+...|+.++|...++...+.. +
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~ 103 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEG---EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-P 103 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 3333334667778888888888 6799999999887643222 23578888889999999999999999987652 2
Q ss_pred cChhhHHHHHHHHH-------hcCCHHHHHHHHHh
Q 040801 228 SHVELKTTLMDAYC-------KCKFVSRAWDLFVK 255 (323)
Q Consensus 228 p~~~~~~~li~~~~-------~~g~~~~a~~~~~~ 255 (323)
.....+..+...|. +.|++++|...+++
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 23445666666666 77787755555543
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.21 E-value=0.65 Score=44.85 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
.+.+|+.+++.+++... -+--|..+...|+..|+++.|+++|.+. ..++--|++|.++|+++.|.++-.
T Consensus 747 ew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH
Confidence 66888888888876543 3445778889999999999999999763 346677899999999999999988
Q ss_pred hccCCCCchhhhHHHhhhccCCCCCcchhhhhhh--CCCCchhHH
Q 040801 255 KMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQIS--GPCPKKAHK 297 (323)
Q Consensus 255 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~--~~~~~~~~~ 297 (323)
+...+ ......|+.-.......|++.+|+++- =..|+++++
T Consensus 816 e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiq 858 (1636)
T KOG3616|consen 816 ECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQ 858 (1636)
T ss_pred HhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHH
Confidence 87754 555556776666777778888887663 234555443
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.12 E-value=0.87 Score=33.11 Aligned_cols=28 Identities=4% Similarity=-0.045 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
++-.+...+.+.|++++|.+.|+.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 31 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK 31 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566677778888888888777653
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.85 E-value=2.4 Score=40.33 Aligned_cols=137 Identities=8% Similarity=-0.090 Sum_probs=91.0
Q ss_pred CCCCCCcccHHHHHHHhcchhh--------HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCC-----ChHHHHHHHH
Q 040801 119 QGLIPDRFMFPSLFKSCADIYV--------EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLD-----QPDEAIKIFY 184 (323)
Q Consensus 119 ~g~~p~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~-----~~~~a~~~~~ 184 (323)
.+.+.|...|...+++...... |..+|++..+.. |+ ...|..+..+|.....+. +...+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4456677888888888654322 777777777654 54 344554444443332221 1123333333
Q ss_pred HHHHc-CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 185 RMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 185 ~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..... ....+...|..+--.....|++++|...+++..+.. |+...|..+-..|...|+.++|.+.+++..+-
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32221 123455777777666667799999999999998875 68888999999999999999999999987654
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.78 E-value=3.7 Score=41.44 Aligned_cols=242 Identities=10% Similarity=0.013 Sum_probs=122.7
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----ccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 112 (323)
.-.+..|+..+...+++++|.++.+.-.+ ..|+. |. .+. ++.+..+.+-..--.++.......++.-...+
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~--~G~-l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYI--SGI-LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHH--HHH-HHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 34567899999999999999999995444 35555 11 111 22222211111111444444444445333333
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 040801 113 YHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE 189 (323)
Q Consensus 113 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~ 189 (323)
+..|...+- +...+-.+-.+|-+.|+ +..+++.+.+.. .-|..+.|.+-..|+.. + .++|.+++..-...
T Consensus 106 ~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHH
Confidence 344443221 22345555555545454 666666666655 33555666666666665 3 35666666555432
Q ss_pred CC---CCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCch
Q 040801 190 NV---KPN--AVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNY 263 (323)
Q Consensus 190 g~---~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 263 (323)
-+ +++ ...|..++. +..-+++.-.++.+.+... |..--..++--|-..|-+..+++++..+++.+.+.- .-
T Consensus 179 ~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~ 255 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NK 255 (906)
T ss_pred HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Cc
Confidence 11 000 001111111 1112233333344444322 444445566667777888888888888888887652 11
Q ss_pred hhh----HHHhhhccCCCCCcchhhhhhhCCCCc
Q 040801 264 GQW----AMSATVGPQGLVGRHSTAHQISGPCPK 293 (323)
Q Consensus 264 ~~~----~~~~~~~~~~~~~~~~~a~~l~~~~~~ 293 (323)
+.| .....-..++.....++++.+.+.-..
T Consensus 256 n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 256 NNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred chhhHHHHHHHHHHHccCcchHHHHHHHhccccC
Confidence 222 222222455556666777777664433
No 143
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=5 Score=40.58 Aligned_cols=188 Identities=11% Similarity=0.141 Sum_probs=112.4
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------------ccchhHHHhcccCCCCChhhHHHHHHHHHhCCCh
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLH 106 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--------------y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~ 106 (323)
..-+.++...+-+.+..++++..+-..-..+. +.+....+..+++..-|. -.+-..+..++-+
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa---~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA---PDIAEIAIENQLY 1064 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc---hhHHHHHhhhhHH
Confidence 44455566666666666666665532211111 111144555555442222 1223445567778
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 040801 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186 (323)
Q Consensus 107 ~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m 186 (323)
++|+.+|+..- .+......||.-.....+|.++-+.. -...+|+.+-.+-...|.+ .+|++-|-+
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v---~dAieSyik- 1129 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLV---KDAIESYIK- 1129 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCch---HHHHHHHHh-
Confidence 99999987653 34455666666555444433332222 2245688888888887744 667665532
Q ss_pred HHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 187 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
.-|...|..+|+...+.|.+++-.+.+-...++..+|... +.||-+|++.|++.+.++++
T Consensus 1130 -----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1130 -----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred -----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 2466778888888888888888888777777776666544 46778888888887776654
No 144
>PLN02789 farnesyltranstransferase
Probab=94.74 E-value=2.8 Score=37.13 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=88.2
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCcc----ch-----------hHHHhcccCC---CCChhhHHHHHHHHH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCA----DY-----------HVRLVFSQIS---NPTIYTCNSIVRGYT 101 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~----~~-----------~a~~lf~~m~---~~~~~~~~~li~~~~ 101 (323)
+..+-..+.+.++.+.|+.+.++.++.. |+.|. |. ++.+.++++. +.+...|+.---.+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 3455556666778889999888887653 33310 00 3333333332 334444554333333
Q ss_pred hCCCh--HHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---C
Q 040801 102 NKNLH--HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC---L 173 (323)
Q Consensus 102 ~~g~~--~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~ 173 (323)
+.|+. ++++++++.+.+..- -|..+|+..--.+.+.|+ +.+.+..+.+.+. -+...|+..--.+.+.|. .
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccc
Confidence 34432 445555555554321 233444443333333333 5555555555442 223334443333333211 1
Q ss_pred C-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc----CChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh
Q 040801 174 D-QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA----RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242 (323)
Q Consensus 174 ~-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 242 (323)
. ..++.++..++..... .-|...|+-+-..+... +...+|.....+..+.+ ..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 0 1133444444444332 22445555555444442 22233444544443322 1234455555666654
No 145
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.67 E-value=4.7 Score=39.30 Aligned_cols=202 Identities=12% Similarity=-0.011 Sum_probs=90.7
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 115 (323)
+...|+.|.-++..+|+++.+-+.|++....-+. ....|+.+=..|...|.-..|..+.++
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-------------------~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-------------------EHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------------------hHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 5556777777777888888777777777655442 223455555555555555555555544
Q ss_pred HHHCCCCC-CcccHHHHHHHhcchhh--------HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC--------ChHH
Q 040801 116 MIVQGLIP-DRFMFPSLFKSCADIYV--------EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD--------QPDE 178 (323)
Q Consensus 116 m~~~g~~p-~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~~~~ 178 (323)
-....-.| |...+-..-+.|.+.-. |.++........-......|-.+=-+|...-.-. ...+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 32221112 22222222222222221 2222221100000111112222222222111000 1234
Q ss_pred HHHHHHHHHHc-CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 179 AIKIFYRMEIE-NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 179 a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+++.+++-.+. +-.|++.-|-++-. +..++++.|.....+..+.+-.-+...|..|.-.+...+++.+|+.+++...
T Consensus 463 slqale~av~~d~~dp~~if~lalq~--A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQY--AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH--HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44444444442 23444444443332 2344566666666555555444455556666666666666666666655443
Q ss_pred C
Q 040801 258 F 258 (323)
Q Consensus 258 ~ 258 (323)
+
T Consensus 541 ~ 541 (799)
T KOG4162|consen 541 E 541 (799)
T ss_pred H
Confidence 3
No 146
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=3.7 Score=37.90 Aligned_cols=210 Identities=11% Similarity=0.062 Sum_probs=150.7
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---ccchhHHHhcccCCCCChhhH-HHHHHHHHhCCChHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---CADYHVRLVFSQISNPTIYTC-NSIVRGYTNKNLHHEAFLF 112 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---y~~~~a~~lf~~m~~~~~~~~-~~li~~~~~~g~~~~A~~~ 112 (323)
--+|-.++......|+.+...++++..+.. ++|-. |=+- -+..| |-.+-.=....+++.+.++
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R------------YIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR------------YIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH------------HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 335566777888889999999999988765 33322 0000 00000 1122222345678899999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhcchhh-------HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 040801 113 YHEMIVQGLIPDRFMFPSLFKSCADIYV-------EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185 (323)
Q Consensus 113 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~ 185 (323)
|..-.. =|+-...||.-+=-.|++-.- |.+++... -|..|-..+|-..|..=.+.+ ++|.+.++++.
T Consensus 389 yq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~---efDRcRkLYEk 462 (677)
T KOG1915|consen 389 YQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLR---EFDRCRKLYEK 462 (677)
T ss_pred HHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 988877 355567888877555554221 66666654 366799999999999888888 66999999999
Q ss_pred HHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchh
Q 040801 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264 (323)
Q Consensus 186 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 264 (323)
-..-+ +-|..+|...-.-=-..|+.+.|..+|+...+. .+..-...|.+.|+-=...|.+++|..+++.+.++....-
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 88765 347788888887778899999999999999764 3444567788888888899999999999999988754455
Q ss_pred hh
Q 040801 265 QW 266 (323)
Q Consensus 265 ~~ 266 (323)
.|
T Consensus 542 vW 543 (677)
T KOG1915|consen 542 VW 543 (677)
T ss_pred HH
Confidence 77
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.47 E-value=0.14 Score=33.20 Aligned_cols=54 Identities=11% Similarity=-0.053 Sum_probs=31.3
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
..+...|++++|...|+.+.+.. +-+...+..+-..+.+.|++++|...|++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666553 2245555555566666666666666666654
No 148
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.42 E-value=1.7 Score=33.15 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
.-..+|..+.+.+.++....+++.+...+. .+...++.++..+++... .++.+.+.. ..+.+....++..|.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---ccccCCHHHHHHHHHHcC
Confidence 345567777777777777777777766653 555666666666665443 111122221 122333334555555544
Q ss_pred CCCChHHHHHHHHHH
Q 040801 172 CLDQPDEAIKIFYRM 186 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m 186 (323)
.++++.-++..+
T Consensus 84 ---l~~~~~~l~~k~ 95 (140)
T smart00299 84 ---LYEEAVELYKKD 95 (140)
T ss_pred ---cHHHHHHHHHhh
Confidence 335555555444
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.39 E-value=0.15 Score=34.43 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-ccC-hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDES----GF-WSH-VELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.+|+.+-..|...|++++|...+++..+. |- .|+ ..++..+-..|.+.|+.++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888888888888888888643 11 122 5567788888999999999999888653
No 150
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.37 E-value=0.58 Score=42.62 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=95.1
Q ss_pred cccHHHHHHHhcchhh---HHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHH-H
Q 040801 125 RFMFPSLFKSCADIYV---EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTL-V 199 (323)
Q Consensus 125 ~~ty~~ll~~~~~~~~---a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~-~ 199 (323)
...|...|+...+... |..+|-...+.| +.+++++++++|.-+|.. ++.-|.++|+-=... -||+..| +
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~----d~~ta~~ifelGl~~--f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG----DRATAYNIFELGLLK--FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC----CcchHHHHHHHHHHh--CCCchHHHH
Confidence 3456666666655444 999999999999 788999999999999875 456899999654332 3444433 4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCccC--hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESGFWSH--VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-.+.-+.+.++-..|..+|+...++ +.-+ ...|..+|+-=...|++..+..+=+.|.+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5677788899999999999966542 1222 567999999989999999988887777654
No 151
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.36 E-value=0.77 Score=44.16 Aligned_cols=153 Identities=17% Similarity=-0.000 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
.|..+|.+|+..|+.++|.++..+-.+ -+||...|..+....-...- |+++.+..-.. -...++-++ .
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar----A~r~~~~~~---~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR----AQRSLALLI---L 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH----HHHhhcccc---c
Confidence 455566666666666666665555544 24555555555444333222 44443332211 001111111 1
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHH
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 247 (323)
+.+ +++++.+.|+.-..-+ .....||=..=.+..+.+++..+.+.|...... .|| ...||.+-.+|.+.|+..
T Consensus 497 ~~~---~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 497 SNK---DFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred cch---hHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhH
Confidence 123 5566666665544321 112233333323334667888888888887764 454 678999999999999999
Q ss_pred HHHHHHHhccCC
Q 040801 248 RAWDLFVKMLFP 259 (323)
Q Consensus 248 ~a~~~~~~m~~~ 259 (323)
+|...+.+..+-
T Consensus 571 ra~~~l~EAlKc 582 (777)
T KOG1128|consen 571 RAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhc
Confidence 999999998765
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.21 E-value=3.7 Score=36.34 Aligned_cols=87 Identities=16% Similarity=0.024 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
+.+.-|.-+...| +...|.++-++-+ -|+..-|-.-|.+++..+++++.+++-. + +-.+.-|.-+++
T Consensus 179 Sl~~Ti~~li~~~---~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~---s---kKsPIGyepFv~ 245 (319)
T PF04840_consen 179 SLNDTIRKLIEMG---QEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAK---S---KKSPIGYEPFVE 245 (319)
T ss_pred CHHHHHHHHHHCC---CHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHh---C---CCCCCChHHHHH
Confidence 3444455666667 4477777766553 4788888888999999999888766532 2 224577888899
Q ss_pred HHHhcCCHHHHHHHHHhccC
Q 040801 239 AYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 239 ~~~~~g~~~~a~~~~~~m~~ 258 (323)
++.+.|+..+|...+.++..
T Consensus 246 ~~~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKIPD 265 (319)
T ss_pred HHHHCCCHHHHHHHHHhCCh
Confidence 99999999999988888654
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.17 E-value=0.29 Score=32.08 Aligned_cols=61 Identities=20% Similarity=-0.004 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC-CHHHHHHHHHhc
Q 040801 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK-FVSRAWDLFVKM 256 (323)
Q Consensus 195 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 256 (323)
..+|..+=..+...|++++|...|++..+.. +-+...|..+-.+|.+.| +.++|.+.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3455555556666666666666666666543 223445555555666666 466666666554
No 154
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=1.2 Score=37.73 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=99.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 172 (323)
+|..+-.....+.-+++|++-... ..++++..+-..++ ..+++..+.+..-+.+....+.|...-...|
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~~-------Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G- 226 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLGR-------VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG- 226 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHH-------HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-
Confidence 444454445557778888765442 23444444444444 7777888888776778888888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHH-----HHhccCChHHHHHHHHHHHHhCCccChhhHH--HHHHHHHhcCC
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLT-----ARARARDLRTVKRVHKCVDESGFWSHVELKT--TLMDAYCKCKF 245 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~ 245 (323)
|.+.|...|++.....-..|..+++.+.. .+.-.+++..|...+.++.... .-|+...| +|+..| .|+
T Consensus 227 --D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~ 301 (366)
T KOG2796|consen 227 --DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGK 301 (366)
T ss_pred --cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHH
Confidence 55888888887766544556666655543 4455677777877787776543 12233333 444444 488
Q ss_pred HHHHHHHHHhccCC
Q 040801 246 VSRAWDLFVKMLFP 259 (323)
Q Consensus 246 ~~~a~~~~~~m~~~ 259 (323)
..+|.+..+.|...
T Consensus 302 l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999876
No 155
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.84 E-value=2 Score=32.48 Aligned_cols=138 Identities=9% Similarity=-0.039 Sum_probs=81.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHH---HHHHHHHHhcCCCCCh
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLH---NTLINMYSSCWCLDQP 176 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~~ 176 (323)
+.-.|.+++..++..+...+ -+..-||.+|-.....-+..-+++.+..-|--.|.... -.+|.+|++.|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n----- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN----- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----
Confidence 34468888888888887653 23345666666555555566677777766644444332 23455555544
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
-+..-+...+..+...|.-++-.++..++.+.+ ++++...-.+-.+|.+.|+..++.+++.+.
T Consensus 84 ----------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 84 ----------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 233344556777778888888888888776532 566777777788888888888888888877
Q ss_pred cCCCCc
Q 040801 257 LFPWNN 262 (323)
Q Consensus 257 ~~~~~~ 262 (323)
-++|..
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 766643
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.62 E-value=1.5 Score=34.30 Aligned_cols=89 Identities=8% Similarity=-0.007 Sum_probs=67.8
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV-TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 243 (323)
.-+...| ++++|.++|+-... +.|... -|-.|=-.|-..|++++|...+........ -|+..+-.+-.+|.+.
T Consensus 43 ~~ly~~G---~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 43 MQLMEVK---EFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHCC---CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3345667 66999999988876 345444 444455555577999999999999988763 4677888888899999
Q ss_pred CCHHHHHHHHHhccCC
Q 040801 244 KFVSRAWDLFVKMLFP 259 (323)
Q Consensus 244 g~~~~a~~~~~~m~~~ 259 (323)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876653
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.58 E-value=2.7 Score=33.90 Aligned_cols=103 Identities=11% Similarity=-0.007 Sum_probs=59.2
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC---Ccc
Q 040801 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG---FWS 228 (323)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p 228 (323)
.+.|++..--.|-.+....| +..+|...|.+-...-+.-|....-.+.++....+++..|...++.+-+.. -.|
T Consensus 84 ~~ApTvqnr~rLa~al~elG---r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 84 AIAPTVQNRYRLANALAELG---RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhchhHHHHHHHHHHHHHhh---hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 44555555556666666666 446666666665443344455566666666666666666666666665432 122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
| +--.+-+.|...|+...|+..|+....-
T Consensus 161 d--~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 D--GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred C--chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 2 2334445666666666666666665543
No 158
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.54 E-value=3.8 Score=34.12 Aligned_cols=192 Identities=10% Similarity=-0.074 Sum_probs=140.3
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
-|--.+-..|++..|+.-++...+.. +-+..+|..+-..|-+.|..+.|.+-|+.-.+.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-------------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-- 98 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-------------------PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-- 98 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-------------------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--
Confidence 44456777788888888888888774 456678999999999999999999999987653
Q ss_pred CCCc-ccHHHHHHHhcchhh---HHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH
Q 040801 122 IPDR-FMFPSLFKSCADIYV---EKQLHSQAIKF-GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV 196 (323)
Q Consensus 122 ~p~~-~ty~~ll~~~~~~~~---a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~ 196 (323)
.|+. ...|..=.-+|..|+ +...|+..... ..---..+|..+.-+-.+.| +++.|.+.|++-.+.. +-...
T Consensus 99 ~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g---q~~~A~~~l~raL~~d-p~~~~ 174 (250)
T COG3063 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG---QFDQAEEYLKRALELD-PQFPP 174 (250)
T ss_pred CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC---CchhHHHHHHHHHHhC-cCCCh
Confidence 3332 223333333455555 66666665543 22223567777777788888 6689999999887754 22445
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 197 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.-.+.+.....|+...|...++.....+- ++....-..|+.--+.|+-+.+.+.=..+.+.
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777888889999999999999999887765 78887778888888889988888776666554
No 159
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=3.6 Score=38.87 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=69.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHH--HHHHHHhcCCCC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNT--LINMYSSCWCLD 174 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~ 174 (323)
|+-+.+.|++++|......+...+ +-|...+..=+-++...+.-.+.+...+..+. ..+++. +=.+||.-. ++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yr-ln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYR-LN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHH-cc
Confidence 455666777888888888877665 33445555556666666663344444444442 112222 356666554 22
Q ss_pred ChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040801 175 QPDEAIKIFYRMEIENVKPNAV-TLVNVLTARARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g 225 (323)
..|+|+..++ |..++.. +.-.=-..|-+.+++++|..++..+.+.+
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5677777666 3333332 44444456667788888888888776553
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.39 E-value=1.6 Score=39.42 Aligned_cols=99 Identities=8% Similarity=-0.044 Sum_probs=59.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD 174 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 174 (323)
..+...|++++|+++|++..+..- -+...|..+-.++.+.|+ |...++...+.. ..+...|..+-.+|...|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg--- 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE--- 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC---
Confidence 345677888888888888876421 233445555555555666 666666665543 124555666666777777
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLT 203 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 203 (323)
++++|...|++... +.|+.......+.
T Consensus 85 ~~~eA~~~~~~al~--l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGAS--LAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 55777777777665 3355444444443
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.20 E-value=1.6 Score=34.40 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..|..+...+...|++++|+..|++..... |+.. ....+|..+-..|...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~----------------------------~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPY----------------------------DRSYILYNIGLIHTSN 85 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccch----------------------------hhHHHHHHHHHHHHHc
Confidence 445666666666777777777776665431 1110 0123566666667777
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHh-------ccCChHHHHHHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA-------RARDLRTVKRVHKCV 221 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-------~~~~~~~a~~~~~~m 221 (323)
| ++++|++.+++..... +....++..+...+. ..|+++.|...+++.
T Consensus 86 g---~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 86 G---EHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred C---CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7 5577887777766532 223344555555555 666777666555544
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.13 E-value=0.73 Score=30.09 Aligned_cols=65 Identities=17% Similarity=0.033 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccC-ChHHHHHHHHHHHHh
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR-DLRTVKRVHKCVDES 224 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~ 224 (323)
++.+|..+=..+...| ++++|+..|++..+.. .-+...|..+-.++...| +.++|...++...+.
T Consensus 2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567888888899999 7799999999998865 336778888889999999 799999999988764
No 163
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.09 E-value=6.4 Score=36.19 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCcccHHHHHHHhcchhh--HHHHHHH-HHHcCCCCchHHH-HHHH
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRFMFPSLFKSCADIYV--EKQLHSQ-AIKFGLASDSFLH-NTLI 164 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~~~--a~~~~~~-m~~~g~~~~~~~~-~~li 164 (323)
..+|...|..-.+..-++.|..+|-+.+..| +.+++..++++|.-++.... |..+|+. |+.. ||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 3568889999999999999999999999999 78999999999999998777 8888876 3333 444333 4556
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPN--AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 242 (323)
.-+.+-+ +-+.|..+|+.-..+ +.-+ ...|..+|.-=..-|++..+..+-++|.+. .|-..+...+...|+-
T Consensus 474 ~fLi~in---de~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRIN---DEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhC---cHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 6667766 558899999855432 2223 568999999889999999988888877664 4555566666666554
Q ss_pred c
Q 040801 243 C 243 (323)
Q Consensus 243 ~ 243 (323)
.
T Consensus 548 k 548 (660)
T COG5107 548 K 548 (660)
T ss_pred h
Confidence 3
No 164
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.02 E-value=5.6 Score=37.44 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=131.7
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCC---ccch-----------hHHHhcc---cCCCCChhhHHHHHHHHHhCCChHHH
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDP---CADY-----------HVRLVFS---QISNPTIYTCNSIVRGYTNKNLHHEA 109 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~---y~~~-----------~a~~lf~---~m~~~~~~~~~~li~~~~~~g~~~~A 109 (323)
+-+.|++..|.-.|+..++.. |.. ..+. .|..-+. ++.+.|....-.|--.|...|.=.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 456688888888888877763 333 1111 2222222 22255777788888899999999999
Q ss_pred HHHHHHHHHCCC-----CC---CcccHHHHHHHhcchhh---HHHHHHH-HHHcCCCCchHHHHHHHHHHHhcCCCCChH
Q 040801 110 FLFYHEMIVQGL-----IP---DRFMFPSLFKSCADIYV---EKQLHSQ-AIKFGLASDSFLHNTLINMYSSCWCLDQPD 177 (323)
Q Consensus 110 ~~~~~~m~~~g~-----~p---~~~ty~~ll~~~~~~~~---a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 177 (323)
++.++.-..... .+ +..+=+. +.+..... ..++|-+ ..+.+.++|..++..|=-.|--.| +++
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~---efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG---EFD 447 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch---HHH
Confidence 999988755321 11 1111100 12222222 4444444 456675566666666666677777 669
Q ss_pred HHHHHHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 178 EAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+|++-|+.... ++| |...||-|=..++...+.++|...+.+..+. +|+ +...-.|--+|...|.+++|.+.|=.
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999998876 455 6689999999999999999999999999876 454 34444455568999999999888765
Q ss_pred c
Q 040801 256 M 256 (323)
Q Consensus 256 m 256 (323)
.
T Consensus 524 A 524 (579)
T KOG1125|consen 524 A 524 (579)
T ss_pred H
Confidence 3
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.95 E-value=0.3 Score=33.62 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHH
Q 040801 141 EKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 141 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
|..+++.+.+..- .++...+-.+-.+|.+.| ++++|+++++. ...+. .+....-.+-.+|.+.|+.++|..+++
T Consensus 8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5555555554442 124444555778888888 66888888877 22111 122333344677778888888888876
Q ss_pred H
Q 040801 220 C 220 (323)
Q Consensus 220 ~ 220 (323)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 5
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.95 E-value=0.73 Score=29.74 Aligned_cols=57 Identities=12% Similarity=-0.084 Sum_probs=46.2
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
-..+.+.| ++++|.+.|++..... .-+...+..+-..+...|++++|..+++++.+.
T Consensus 4 a~~~~~~g---~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQG---DYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCT---HHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34577778 7799999999998766 236678888888999999999999999998765
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=5.1 Score=33.90 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
++|+++++...+.+ +.|.++|--=+...-..|.--+|.+-+....+. +.-|...|.-|-+.|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 45555555555444 334444443333333333333333333333222 3345555555555555555555555555554
Q ss_pred c
Q 040801 257 L 257 (323)
Q Consensus 257 ~ 257 (323)
.
T Consensus 181 l 181 (289)
T KOG3060|consen 181 L 181 (289)
T ss_pred H
Confidence 4
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.91 E-value=0.44 Score=31.59 Aligned_cols=56 Identities=13% Similarity=-0.066 Sum_probs=34.3
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..+.+.++++.|..+++.+.+.+ +.+...|...-..|.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666653 224555555666666667777776666666544
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.83 E-value=3.1 Score=31.03 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC----hhhHHHHHHH
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPN--AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH----VELKTTLMDA 239 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 239 (323)
++-..| +.++|+.+|++-...|.... ...+-.+-..+-..|+.++|..+++...... |+ ......+.-+
T Consensus 10 a~d~~G---~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 10 AHDSLG---REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 344455 56888888888877775544 2355556667777888888888888776542 33 1222223346
Q ss_pred HHhcCCHHHHHHHHHhcc
Q 040801 240 YCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 240 ~~~~g~~~~a~~~~~~m~ 257 (323)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 677788888887775543
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.83 E-value=7.4 Score=37.05 Aligned_cols=138 Identities=10% Similarity=-0.111 Sum_probs=91.6
Q ss_pred CCChhhHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHhcch--------hhHHHHHHHHHH--
Q 040801 87 NPTIYTCNSIVRGYTNKN-----LHHEAFLFYHEMIVQGLIPDR-FMFPSLFKSCADI--------YVEKQLHSQAIK-- 150 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~--------~~a~~~~~~m~~-- 150 (323)
..|...|...+++..... ..++|.++|++-.+. .||- ..|..+..++... .+.....+...+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 457788999999865433 277999999998774 5654 3333332222111 111222232222
Q ss_pred -c-CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 151 -F-GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 151 -~-g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
. ....+...|..+--.....| ++++|...+++..+.+ |+...|..+-..+...|+.++|...+++.... .|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g---~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKG---KTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 1 12334566776655555567 7799999999998855 78899999999999999999999999998765 45
Q ss_pred ChhhH
Q 040801 229 HVELK 233 (323)
Q Consensus 229 ~~~~~ 233 (323)
...+|
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 54444
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.74 E-value=2 Score=36.92 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHhCC--ccCh
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA----VTLVNVLTARARARDLRTVKRVHKCVDESGF--WSHV 230 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~ 230 (323)
...|..-+..+.+.| ++++|...|+.....- |+. ..+-.+-..+...|+.+.|...|+.+.+.-- ....
T Consensus 143 ~~~Y~~A~~l~~~~~---~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 143 NTDYNAAIALVQDKS---RQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 445777666666667 6799999999998753 443 4566788889999999999999999986521 1123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..+-.+...|.+.|+.++|..++++..+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344456677899999999999998765
No 172
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.61 E-value=2.8 Score=36.17 Aligned_cols=127 Identities=7% Similarity=-0.063 Sum_probs=86.0
Q ss_pred HHHHHHHhcchhhHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHH
Q 040801 128 FPSLFKSCADIYVEKQLHSQAIK-FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNAVTLVNVLTAR 205 (323)
Q Consensus 128 y~~ll~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~ 205 (323)
|..|++.-.-.-+|.++++.... ..+--|..+...|++......+. ....-.++.+-+... |-.++..+..++|+.+
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L 212 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-KLNALYEVVDFLVSTFSKSLTRNVIISILEIL 212 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-chhhHHHHHHHHHhccccCCChhHHHHHHHHH
Confidence 66665432222224444443221 23556777777777777773222 333444555555443 4578888888999999
Q ss_pred hccCChHHHHHHHHHHHHh-CCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 206 ARARDLRTVKRVHKCVDES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+..+++.+-.++|+..... +..-|...|..+|+.....|+..-...+.++
T Consensus 213 ~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 213 AESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999999999988887654 6667888999999999999998888888775
No 173
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.60 E-value=12 Score=37.24 Aligned_cols=75 Identities=5% Similarity=-0.059 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhc
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVG 273 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 273 (323)
|...|...-.-+-..|+.+.|..+++..+ .|-++++..|-.|+.++|-++-++-. .....+.+...|.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYE 978 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhh
Confidence 44455555555556677777777776643 36677777788888888887766543 3445555555555
Q ss_pred cCCCCCc
Q 040801 274 PQGLVGR 280 (323)
Q Consensus 274 ~~~~~~~ 280 (323)
..|+.++
T Consensus 979 n~g~v~~ 985 (1416)
T KOG3617|consen 979 NDGDVVK 985 (1416)
T ss_pred hhHHHHH
Confidence 5554433
No 174
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=9.6 Score=36.16 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=30.9
Q ss_pred ccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+.|+.++|..+++++.+.. ++|..+...++.+|++. ++++|..+-..+.
T Consensus 470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 5567777777777766643 45666666777777665 4566666655553
No 175
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.52 E-value=3.7 Score=31.22 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=69.2
Q ss_pred HHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 040801 129 PSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205 (323)
Q Consensus 129 ~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 205 (323)
..++..+...+. ...+++.+.+.+ ..+...+|.+|..|++.. .++.++.++. ..+......+++.|
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~----~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD----PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC----HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 344555543333 556666666665 367778888888888763 3555666553 23444555577888
Q ss_pred hccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc-CCHHHHHHHHHhccCCCCchhhh
Q 040801 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC-KFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
-+.+-++++..++.++.. |...++.+... ++++.|.+.+.+-. ++..|
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~----~~~lw 128 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN----NPELW 128 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC----CHHHH
Confidence 888877777777766432 33334444444 77787877777622 45555
No 176
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.49 E-value=3.4 Score=31.83 Aligned_cols=102 Identities=9% Similarity=0.031 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCCCch--HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-----CCCChHHHHHHHHHHhccCC-hHHH
Q 040801 143 QLHSQAIKFGLASDS--FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN-----VKPNAVTLVNVLTARARARD-LRTV 214 (323)
Q Consensus 143 ~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~~~-~~~a 214 (323)
+....|++.+..++. ...|+++.-....+ ++...+.+++.+..-. -.-+..+|.+++.+.++..- --.+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~---nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~ 99 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQ---NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTS 99 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHH
Confidence 444666777777765 44688888888777 5578888888874321 13467789999999987776 5557
Q ss_pred HHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 215 KRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 215 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
..+|+.|++.+.+++...|..||.+..+....+
T Consensus 100 ~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 100 LTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 788999999999999999999999888764443
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.14 E-value=1.3 Score=39.12 Aligned_cols=52 Identities=8% Similarity=-0.031 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 197 TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 197 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
+.+..|.-|...|+...|.++-.+ .+ .||..-|-.-|.+|+..|++++-+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~---Fk-v~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE---FK-VPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH---cC-CcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344444455555555554444332 22 24555555555555555555555544
No 178
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.01 E-value=2 Score=41.74 Aligned_cols=143 Identities=9% Similarity=0.054 Sum_probs=91.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCC
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 175 (323)
+......+.+|+.+++.+..+... ..-|..+-..|+..|+ |+++|-+ .| .++--|.+|.+.| .
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~---k 806 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAG---K 806 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccc---c
Confidence 444556777888888888766442 3458888889999988 6666643 23 3677789999999 6
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH----------HhCCc-----------cC--hhh
Q 040801 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD----------ESGFW-----------SH--VEL 232 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~----------~~g~~-----------p~--~~~ 232 (323)
+++|.++-.+. .|-+..++.|.+-.+-+-+.|.+.+|++++-.+. +.|.. |+ ..|
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt 884 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDT 884 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence 68998876554 4555566777777777777777777766542211 11111 11 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 233 KTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 233 ~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
-..+-.-|-..|++..|++-|-+..
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh
Confidence 3445555666677777777665543
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.95 E-value=1.7 Score=28.58 Aligned_cols=62 Identities=8% Similarity=-0.057 Sum_probs=49.2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 232 (323)
..|.+.+ ++++|.++++.+...+ +.+...+...-..+.+.|++++|...++...+.+ |+...
T Consensus 3 ~~~~~~~---~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQE---DYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD 64 (73)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence 4577777 7799999999998865 3366777778888899999999999999998764 44443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.92 E-value=0.95 Score=33.73 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=49.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCccC--hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 201 VLTARARARDLRTVKRVHKCVDESGFWSH--VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+-.++-..|+.++|..+++...+.|.... ...+-.+-..|-..|++++|..++++....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566688999999999999999987765 445667777899999999999999998765
No 181
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.89 E-value=7.7 Score=33.51 Aligned_cols=102 Identities=10% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHH-cCCCCChHHHHHHHHHHhc-cC-ChHHHHHHHHHHH-HhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 177 DEAIKIFYRMEI-ENVKPNAVTLVNVLTARAR-AR-DLRTVKRVHKCVD-ESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 177 ~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~-~~-~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
.+|+++|+.... +.+--|..+...+++.... .+ ....-.++.+.+. +.|-.++..+....|+.+++.+++.+-.++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Confidence 578888874333 3456677777777777766 22 3334445555554 345678888899999999999999999999
Q ss_pred HHhccCC---CCchhhh-HHHhhhccCCCC
Q 040801 253 FVKMLFP---WNNYGQW-AMSATVGPQGLV 278 (323)
Q Consensus 253 ~~~m~~~---~~~~~~~-~~~~~~~~~~~~ 278 (323)
++..... +.++-+| .++..+...|+.
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 9877544 5677888 777777776653
No 182
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.75 E-value=17 Score=37.17 Aligned_cols=163 Identities=10% Similarity=-0.063 Sum_probs=86.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC--cccHHHHHHHhcchhh---HHHHHHHHHHcCCC-CchHHH----
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQ--GLIPD--RFMFPSLFKSCADIYV---EKQLHSQAIKFGLA-SDSFLH---- 160 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~-~~~~~~---- 160 (323)
+..+-..+...|++++|.+.+.+.... ...+. ..++..+-......|+ |.+.++......-. .....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 333444556668888888777765432 11121 1222223333344444 55555555332100 011111
Q ss_pred -HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccC-hh
Q 040801 161 -NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA---VTLVNVLTARARARDLRTVKRVHKCVDES----GFWSH-VE 231 (323)
Q Consensus 161 -~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ 231 (323)
...+..+...| +.+.|.+++.+.......... ..+..+..++...|+.++|...++...+. |..++ ..
T Consensus 656 ~~~~~~~~~~~g---~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 656 DKVRLIYWQMTG---DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11123344455 557777776554432111111 11345666778889999998888887543 33332 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+...+-.+|.+.|+.++|...+.+..+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666788899999999888887754
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.45 E-value=3.8 Score=40.43 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
++|.|+.++..-++ |=++.+..|-.|++++|-++-++ .| |....-.|-+.|-..|++.+|..+|-
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44666666654432 33456666677777777666554 22 44555566666666666666666665
Q ss_pred hc
Q 040801 255 KM 256 (323)
Q Consensus 255 ~m 256 (323)
+.
T Consensus 992 rA 993 (1416)
T KOG3617|consen 992 RA 993 (1416)
T ss_pred HH
Confidence 54
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.40 E-value=0.61 Score=31.41 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc--CCC---CC-hHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE--NVK---PN-AVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~--g~~---p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
..+|+.+-..|...| ++++|++.|++..+- ... |+ ..++..+-..+...|+.++|...+++..+
T Consensus 5 a~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELG---RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357888999999999 779999999888752 122 33 56888888999999999999999998754
No 185
>PLN02789 farnesyltranstransferase
Probab=91.27 E-value=10 Score=33.66 Aligned_cols=129 Identities=5% Similarity=-0.111 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+...++.+.+..- -+..+|+.---.+.+.|.. ..++++.+++++.+.. .-|..+|+---..+...|+++++...+++
T Consensus 91 eL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~-~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 91 ELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD-AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch-hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5555555544431 1223344332223333321 1245677777776654 23667777777777777788888888888
Q ss_pred HHHhCCccChhhHHHHHHHHHhc---CCH----HHHHHHHHh-ccCCCCchhhhHHHhhhc
Q 040801 221 VDESGFWSHVELKTTLMDAYCKC---KFV----SRAWDLFVK-MLFPWNNYGQWAMSATVG 273 (323)
Q Consensus 221 m~~~g~~p~~~~~~~li~~~~~~---g~~----~~a~~~~~~-m~~~~~~~~~~~~~~~~~ 273 (323)
+.+.+.. +...|+..-..+.+. |.. ++..+...+ +...+.+...|.|...+-
T Consensus 168 ~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 168 LLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF 227 (320)
T ss_pred HHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 8776532 345555544444333 222 345555533 444466777785555443
No 186
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=11 Score=34.21 Aligned_cols=160 Identities=9% Similarity=-0.025 Sum_probs=87.9
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHhcchhhHHHHHHHHHHcC-CCCchHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR----FMFPSLFKSCADIYVEKQLHSQAIKFG-LASDSFLHN 161 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~ 161 (323)
.-|+.....+-+.+...|+.++|...|+.-+.- .|+. ..|..|+.-=++..+...+...+.... .....+.-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 557777888888889999999999888876542 2322 234444433333333333333332221 112122112
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 241 (323)
.-+..+.| +++.|+.+-++-.+.. .-++..|-.==+.+...+++++|.--|+...... +-+...|..|++.|.
T Consensus 307 ~~~l~~~K-----~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 307 AQLLYDEK-----KFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhh-----hHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence 22222233 5567777666555422 1122222111144556777777777777765542 235677888888888
Q ss_pred hcCCHHHHHHHHHh
Q 040801 242 KCKFVSRAWDLFVK 255 (323)
Q Consensus 242 ~~g~~~~a~~~~~~ 255 (323)
..|++.+|...-++
T Consensus 380 A~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 380 AQKRFKEANALANW 393 (564)
T ss_pred hhchHHHHHHHHHH
Confidence 88888887765544
No 187
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=11 Score=38.25 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh-C----------CccChhhHHHHHHHHHhc
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-G----------FWSHVELKTTLMDAYCKC 243 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g----------~~p~~~~~~~li~~~~~~ 243 (323)
.++++++.++.|...+++-|..+.-.+..-|+..=..+...++|+..+.. | +.-|+.+.--.|.+-|+.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 67899999999999999989888888888887776667777777766542 2 445666667789999999
Q ss_pred CCHHHHHHHHHhc
Q 040801 244 KFVSRAWDLFVKM 256 (323)
Q Consensus 244 g~~~~a~~~~~~m 256 (323)
|++.+.+++-++-
T Consensus 738 ~QikEvERicres 750 (1666)
T KOG0985|consen 738 GQIKEVERICRES 750 (1666)
T ss_pred ccHHHHHHHHhcc
Confidence 9999999987764
No 188
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=12 Score=34.05 Aligned_cols=208 Identities=13% Similarity=-0.017 Sum_probs=105.3
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC------ccch------------hHHHhcccCCCCChhhHHHHHHHHHh
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP------CADY------------HVRLVFSQISNPTIYTCNSIVRGYTN 102 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~------y~~~------------~a~~lf~~m~~~~~~~~~~li~~~~~ 102 (323)
..+-..+...|+.+.|.-.|+...- +.|.. |+-. ....+|..- +.....|-.-......
T Consensus 236 ~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 236 MALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhh
Confidence 4455555566788888877776543 33433 2222 233333321 2233344444455556
Q ss_pred CCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCCCChHHH
Q 040801 103 KNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA-SDSFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~~~a 179 (323)
..+++.|+.+-++-++.. ..|-...=..++....+...|.-.|..... +. -+..+|-.|+++|...|.. .+|
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~---kEA 387 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF---KEA 387 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH---HHH
Confidence 677777777776655421 111111111222222222224444444333 33 3567888888888888844 454
Q ss_pred HHHHHHHHHc----------------------------------CCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 180 IKIFYRMEIE----------------------------------NVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 180 ~~~~~~m~~~----------------------------------g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.-+-++-... .++|+- -..+.+.+-|...|..+.+..+++.-...
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 4333222110 123332 23344445555556666666666554443
Q ss_pred CCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 225 GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 225 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.||....+.|-+.+...+.+.+|.+-|....+
T Consensus 468 --~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 468 --FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred --ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46666666666666666666666666665544
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.36 E-value=3.5 Score=35.61 Aligned_cols=82 Identities=16% Similarity=0.012 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
++++|++.|.+-..-. .-|.+-|..=-.+|++.|..+.|.+--+...+. .| ....|..|=.+|...|++++|.+.|
T Consensus 96 ~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 6678888887776633 236677777788888888887776655554443 23 3566777777888888888888888
Q ss_pred HhccCC
Q 040801 254 VKMLFP 259 (323)
Q Consensus 254 ~~m~~~ 259 (323)
++-.+-
T Consensus 173 kKaLel 178 (304)
T KOG0553|consen 173 KKALEL 178 (304)
T ss_pred Hhhhcc
Confidence 776653
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.16 E-value=0.62 Score=27.59 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW 266 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~ 266 (323)
++..+-..|.+.|++++|.++|++..+. +.++..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 4566677777777777777777777654 3344444
No 191
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.77 E-value=5.7 Score=39.43 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 149 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
++.+-.+.+.++.+|+. .+.| ..++|..+++.....+.. |..|..++-..|-..++.+++..+|++..+. .|
T Consensus 37 kk~Pn~~~a~vLkaLsl--~r~g---k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P 108 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSL--FRLG---KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YP 108 (932)
T ss_pred HHCCCcHHHHHHHHHHH--HHhc---CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CC
Confidence 44444444555555542 3444 447888888777665544 7788888888888888888888888887765 46
Q ss_pred ChhhHHHHHHHHHhcCCHHH----HHHHHHhccCCCCchhhhHHHhhhcc
Q 040801 229 HVELKTTLMDAYCKCKFVSR----AWDLFVKMLFPWNNYGQWAMSATVGP 274 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~~~~ 274 (323)
+......+.-+|+|.+.+.+ |.+++....++ ..-.|++...+-.
T Consensus 109 ~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~--~yyfWsV~Slilq 156 (932)
T KOG2053|consen 109 SEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR--AYYFWSVISLILQ 156 (932)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--cchHHHHHHHHHH
Confidence 67777777778888877655 44444444443 4455655544433
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.39 E-value=2.3 Score=39.09 Aligned_cols=95 Identities=11% Similarity=-0.063 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA----VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 231 (323)
+...|+.+-.+|.+.| ++++|+..|++-.+ +.|+. .+|..+-.+|...|+.++|...+++..+.+ .+
T Consensus 74 ~a~a~~NLG~AL~~lG---ryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~--- 144 (453)
T PLN03098 74 TAEDAVNLGLSLFSKG---RVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL--- 144 (453)
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence 4667888888898888 66899999988766 35664 358888889999999999999999988762 11
Q ss_pred hHHHHHH--HHHhcCCHHHHHHHHHhccCC
Q 040801 232 LKTTLMD--AYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 232 ~~~~li~--~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.|..+.. .+....+.++..+++++..+-
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 2322221 122333445667777766554
No 193
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.27 E-value=20 Score=33.94 Aligned_cols=82 Identities=7% Similarity=-0.055 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHH-cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 176 PDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 176 ~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
..+..++|-++.. .+.++|....+.|=--|--.|++++|...|+...+. +| |..+||-|=-.++...+.++|...|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3455566666654 342344444444444455678888888888888765 44 6778888888888888999999999
Q ss_pred HhccCC
Q 040801 254 VKMLFP 259 (323)
Q Consensus 254 ~~m~~~ 259 (323)
++..+-
T Consensus 488 ~rALqL 493 (579)
T KOG1125|consen 488 NRALQL 493 (579)
T ss_pred HHHHhc
Confidence 888764
No 194
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.20 E-value=16 Score=37.32 Aligned_cols=156 Identities=8% Similarity=-0.115 Sum_probs=95.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHhcchhh---HHHHHHHHHHc----CC-CCchHHHHHHHHH
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDR----FMFPSLFKSCADIYV---EKQLHSQAIKF----GL-ASDSFLHNTLINM 166 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~-~~~~~~~~~li~~ 166 (323)
.+...|++++|...+++-.+.--..+. .+.+.+-..+...|+ +...++..... |- .....++..+-..
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 456789999999999887653111111 122333333444555 66666665432 21 1123445556667
Q ss_pred HHhcCCCCChHHHHHHHHHHHH----cCCC--C-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCcc--ChhhHHH
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEI----ENVK--P-NAVTLVNVLTARARARDLRTVKRVHKCVDES--GFWS--HVELKTT 235 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~----~g~~--p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~ 235 (323)
+...| ++++|.+.+++... .|.. + ....+..+-..+...|++++|...+.+.... ...+ ....+..
T Consensus 541 ~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 541 LFAQG---FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHCC---CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 78888 66899998877654 2211 1 2234445556677789999999998887543 1112 2334445
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc
Q 040801 236 LMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+...+...|+.++|.+.+++..
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6667889999999999888763
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.10 E-value=5.2 Score=36.84 Aligned_cols=96 Identities=9% Similarity=-0.103 Sum_probs=63.3
Q ss_pred CCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh
Q 040801 123 PDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS----FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195 (323)
Q Consensus 123 p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~ 195 (323)
.+...++.+-.+|.+.|+ |...++...+. .|+. .+|..+-.+|.+.| +.++|++.+++..+.+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LG---r~dEAla~LrrALels-n~-- 144 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYRE---EGKKAADCLRTALRDY-NL-- 144 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-ch--
Confidence 345677777778888888 77777777775 4764 46999999999999 6699999999988742 11
Q ss_pred HHHHHHHH--HHhccCChHHHHHHHHHHHHhCCc
Q 040801 196 VTLVNVLT--ARARARDLRTVKRVHKCVDESGFW 227 (323)
Q Consensus 196 ~t~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~ 227 (323)
-|..+.. .+...++.....++++.+.+.|..
T Consensus 145 -~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 145 -KFSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred -hHHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 2322221 111223444666677777666643
No 196
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=16 Score=32.59 Aligned_cols=180 Identities=16% Similarity=0.091 Sum_probs=106.9
Q ss_pred hHHHhcccCCCCChhhHHHHHHH--HHhCCC-------hHHHHHHHHHHHHCCCC----CCcccHHHHHHHhcchhhHHH
Q 040801 77 HVRLVFSQISNPTIYTCNSIVRG--YTNKNL-------HHEAFLFYHEMIVQGLI----PDRFMFPSLFKSCADIYVEKQ 143 (323)
Q Consensus 77 ~a~~lf~~m~~~~~~~~~~li~~--~~~~g~-------~~~A~~~~~~m~~~g~~----p~~~ty~~ll~~~~~~~~a~~ 143 (323)
+|..+.++..+.++.-| ++++ ++..|+ ..-|.++|.-.-+++.. |...+..+.+-.+-+-.++.-
T Consensus 303 eA~~L~Kdl~PttP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 303 EAISLCKDLDPTTPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHhhcCCCChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 77777777765444333 3332 223332 55667777555455543 333333333333333333444
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHH-HHHhccCChHHHHHHHHHHH
Q 040801 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL-TARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 144 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~a~~~~~~m~ 222 (323)
.+...+..=..-|.+.|| +-.+++..| ++.+|.++|-......++ |..+|.+++ ++|.+.+....|+.++=.+
T Consensus 381 YlnSi~sYF~NdD~Fn~N-~AQAk~atg---ny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~- 454 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNLN-LAQAKLATG---NYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT- 454 (557)
T ss_pred HHHHHHHHhcCcchhhhH-HHHHHHHhc---ChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc-
Confidence 444444433344455444 678888888 668999999776544444 667777665 6777888888876665444
Q ss_pred HhCCccChhhHHHH-HHHHHhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 223 ESGFWSHVELKTTL-MDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 223 ~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
.-..+....-.+ ..-|-++|.+=-|-+.|+++......|..|
T Consensus 455 --~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 455 --NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 323344444444 446888999988888998887764456666
No 197
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.90 E-value=10 Score=30.02 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 210 (323)
..+..+-..|.+.| ++++|.+.+++..... .-+...+..+-..+...|+
T Consensus 73 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNG---EHDKALEYYHQALELN-PKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC
Confidence 45666666777777 5577777777766532 1134445455555555444
No 198
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.78 E-value=1.3 Score=38.52 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
++++++-++..-.+-|+-||-+|++.+|+.+.+.+++..|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544443
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=15 Score=31.47 Aligned_cols=99 Identities=8% Similarity=-0.030 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
.+.++++..+.-.| .+.-.+..+++.....-+-+..-...|.+.-.+.||++.|...|++..+..=+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~k---Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 178 RVMYSMANCLLGMK---EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHhcch---hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 45566666666666 345677777777776656677788888888888889888888888876544445555555544
Q ss_pred H-----HHHhcCCHHHHHHHHHhccCC
Q 040801 238 D-----AYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 238 ~-----~~~~~g~~~~a~~~~~~m~~~ 259 (323)
. .|...++..+|...+.++.++
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhcccc
Confidence 3 366677888888888887765
No 200
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.22 E-value=6.8 Score=33.85 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH-----hCCccChhh
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE-----SGFWSHVEL 232 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 232 (323)
.++..++..+..+| +.+.+.+.+++..... .-|...|..+|.+|.+.|+...|.+.++.+.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~---~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACG---RADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcc---cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 44566666666666 4466666666666544 34666777777777777777777766666643 466666665
Q ss_pred HHHHHHH
Q 040801 233 KTTLMDA 239 (323)
Q Consensus 233 ~~~li~~ 239 (323)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 5544444
No 201
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=88.03 E-value=26 Score=33.76 Aligned_cols=216 Identities=8% Similarity=-0.037 Sum_probs=116.0
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcC-CCCC--ccch-----------------hHHHhcccCC--CCChhhH-
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSL-FFDP--CADY-----------------HVRLVFSQIS--NPTIYTC- 93 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~-~~~~--y~~~-----------------~a~~lf~~m~--~~~~~~~- 93 (323)
...|-.+..+..-.|+...|..+.++..+... .|+. |.+. .|.+-+.... ..|-..|
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~ 222 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh
Confidence 44666777777778999999999999998764 3333 2222 3444333332 1222222
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhc-chhh---HH-HHHHHHHHc---CCCCc---------
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCA-DIYV---EK-QLHSQAIKF---GLASD--------- 156 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~-~~~~---a~-~~~~~m~~~---g~~~~--------- 156 (323)
.+--.-+.+.+++++|..+|..+... .||..-|...+..+. +..+ +. .+++...+. .-.|-
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc
Confidence 23344667889999999999998775 477766666554444 3333 22 334433322 11111
Q ss_pred -------------------hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--cCC------------CCChHHHH--HH
Q 040801 157 -------------------SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI--ENV------------KPNAVTLV--NV 201 (323)
Q Consensus 157 -------------------~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~--~g~------------~p~~~t~~--~l 201 (323)
..++..+.+-|-.-. ..+-..++.-++.. .|- .|+...|+ -+
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~---k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE---KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh---HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 112222222222111 00111111111111 111 34444333 35
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 202 LTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+..+-+.|+++.|+..++....+ .|+ +..|-.=-+.+.-+|++++|..++++..+-
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 56667778888888888876665 333 223334446777888888888888877654
No 202
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=87.48 E-value=18 Score=31.30 Aligned_cols=208 Identities=11% Similarity=0.078 Sum_probs=118.1
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---ccch--hHHHhcccCC-CCChhhHHHHHHHHHhCCChHHHHHHH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---CADY--HVRLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFY 113 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---y~~~--~a~~lf~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 113 (323)
|.---..+...++++.|...|....+.-...+. -++. .|..++.+.. ..-+..|.-.+..|...|++..|-+++
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444555666677888888888877654432222 1111 5666666653 112355777888888888888888777
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHH----HcCCCC--chHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 040801 114 HEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAI----KFGLAS--DSFLHNTLINMYSSCWCLDQPDEAIKIFYRME 187 (323)
Q Consensus 114 ~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~----~~g~~~--~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~ 187 (323)
.++-+-=. ....-+.. |.+.|+... ..| .+ -..++..+...+.+.| ++++|.++|++..
T Consensus 118 ~~lA~~ye-~~~~d~e~----------Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~---~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 118 KELAEIYE-EQLGDYEK----------AIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG---RYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHC-CTT--HHH----------HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCHHH----------HHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 77633100 00011222 444444332 223 22 2455677888899988 7799999999987
Q ss_pred HcCC-----CCChH-HHHHHHHHHhccCChHHHHHHHHHHHHh--CCccC--hhhHHHHHHHHHhc--CCHHHHHHHHHh
Q 040801 188 IENV-----KPNAV-TLVNVLTARARARDLRTVKRVHKCVDES--GFWSH--VELKTTLMDAYCKC--KFVSRAWDLFVK 255 (323)
Q Consensus 188 ~~g~-----~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~li~~~~~~--g~~~~a~~~~~~ 255 (323)
.... +.+.. .|-..+-.+...||...|...+++..+. ++..+ ..+...||++|-.. ..+.+|..-|+.
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 6432 22332 2333344556678999999999998754 44433 34566777776543 345566665655
Q ss_pred ccCCCCchhhh
Q 040801 256 MLFPWNNYGQW 266 (323)
Q Consensus 256 m~~~~~~~~~~ 266 (323)
+. ..+.|
T Consensus 263 ~~----~ld~w 269 (282)
T PF14938_consen 263 IS----RLDNW 269 (282)
T ss_dssp SS-------HH
T ss_pred cC----ccHHH
Confidence 55 45667
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.25 E-value=24 Score=34.19 Aligned_cols=207 Identities=10% Similarity=0.035 Sum_probs=105.5
Q ss_pred hhhHHHhhcCCCchHHHHHH--HHHHHhcCCCCC--------ccch--hHHHhcccCCCC--ChhhHHH-----HHHHHH
Q 040801 41 HFCLVSLEKCSTMRELKQIH--AQMLRTSLFFDP--------CADY--HVRLVFSQISNP--TIYTCNS-----IVRGYT 101 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~--~~m~~~~~~~~~--------y~~~--~a~~lf~~m~~~--~~~~~~~-----li~~~~ 101 (323)
++-=.++.+.++....+-|. ++|+++|-.|+. |..- +|.++|.+-... -...|+- ..+-|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHh
Confidence 44445666666655444443 467788888887 5444 888888765422 1122221 123333
Q ss_pred hCCChHHHHHHHHHHHH--CCCCCCcccHHHHHHHhcchhhH-----HH-HHHHHHHcCCCCchHHHHHHHHHHHhcCCC
Q 040801 102 NKNLHHEAFLFYHEMIV--QGLIPDRFMFPSLFKSCADIYVE-----KQ-LHSQAIKFGLASDSFLHNTLINMYSSCWCL 173 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~--~g~~p~~~ty~~ll~~~~~~~~a-----~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 173 (323)
..|..++-..+.++--+ ..++-- ..-..++-..+...+| .. ..+.+.+-+.+.|..--.+|...-.....+
T Consensus 682 ~~g~~~eKKmL~RKRA~WAr~~keP-kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADWARNIKEP-KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKL 760 (1081)
T ss_pred hcCChHHHHHHHHHHHHHhhhcCCc-HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhc
Confidence 44444333333322111 111111 1111122111211111 11 112223333334433333333222222222
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh-----------hHHHHHHHHHh
Q 040801 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE-----------LKTTLMDAYCK 242 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~li~~~~~ 242 (323)
+.+.-|-++|..|-+. .++.+.....+++++|..+-+..-+. .||+. -|.---.+|.|
T Consensus 761 ~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 2456788888887542 25677788889999988877665432 33332 24455578999
Q ss_pred cCCHHHHHHHHHhccCC
Q 040801 243 CKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~~ 259 (323)
+|+-.+|..+++++...
T Consensus 830 AGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hcchHHHHHHHHHhhhh
Confidence 99999999999998654
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.07 E-value=18 Score=30.71 Aligned_cols=55 Identities=7% Similarity=-0.040 Sum_probs=32.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHh--CCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 202 LTARARARDLRTVKRVHKCVDES--GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
.+-|.+.|.+..|..=++.+.+. +-+......-.++++|.+.|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33455666666666666666653 22233444556666777777777776665544
No 205
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.93 E-value=2.7 Score=36.25 Aligned_cols=71 Identities=14% Similarity=-0.069 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-----CCchhhh
Q 040801 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-----WNNYGQW 266 (323)
Q Consensus 195 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~ 266 (323)
..++..+++.+...|+.+.+...++++.+.. +-+...|..+|.+|.+.|+...|...++.+.+. |+.|..-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 4567788889999999999999999998864 458899999999999999999999999988652 5555443
No 206
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=86.90 E-value=31 Score=33.33 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=76.8
Q ss_pred CCchHHHH--HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh
Q 040801 154 ASDSFLHN--TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV-TLVNVLTARARARDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 154 ~~~~~~~~--~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
.|.+..|. .++..|=+.| +++.|...++.-.+ -.|+.+ -|.+=-+.+...|+++.|...+++..+.. .+|.
T Consensus 366 ~PttllWt~y~laqh~D~~g---~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR 439 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLG---DYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADR 439 (700)
T ss_pred CchHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhH
Confidence 45555554 5777788888 67999999988765 356553 55556688999999999999999998765 3555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCCCC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN 261 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 261 (323)
..-.-=..-..+++++++|.++.....+.|.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5544555667789999999999998887753
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=16 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
|...|-.|=..|...|+++.|..-|.+-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A 182 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNA 182 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4455555555555555555555555444
No 208
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=6.2 Score=34.49 Aligned_cols=100 Identities=9% Similarity=0.115 Sum_probs=72.6
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCCCCchHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG---LIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~~~ 161 (323)
.....+-..++..-....+++.+..++-.++.+- ..|+...|. +++.|-+... +.-++..=.+.|+-||.++++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irlllky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHHHccChHHHHHHHhCcchhccccchhhHH
Confidence 4455555666776667788999999888887642 445554443 3444444333 666777777899999999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIEN 190 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g 190 (323)
.+|+.+.+.+ +..+|.++..+|....
T Consensus 140 ~l~D~flk~~---n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKE---NYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcc---cHHHHHHHHHHHHHHH
Confidence 9999999999 6688888888877654
No 209
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=19 Score=30.65 Aligned_cols=187 Identities=9% Similarity=-0.026 Sum_probs=128.2
Q ss_pred CCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc----
Q 040801 51 STMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI-YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR---- 125 (323)
Q Consensus 51 ~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 125 (323)
++++...+++.++....-.- ...++. ..|--++-+....|+.+.|...++.+..+- |.+
T Consensus 26 rnseevv~l~~~~~~~~k~~--------------~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~ 89 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--------------ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVG 89 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--------------ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHH
Confidence 35677777777776322100 003333 346667778889999999999999998763 544
Q ss_pred ccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 040801 126 FMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205 (323)
Q Consensus 126 ~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 205 (323)
..+..++.+-..-++|.++++.+.+.. .-|.++|--=+...-..| ..-+|++-+.+..+. +.-|...|--+-+.|
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G---K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG---KNLEAIKELNEYLDK-FMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC---CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 334556677666666999999998877 456777765555555556 335788877777654 467999999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC---CHHHHHHHHHhccCC
Q 040801 206 ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK---FVSRAWDLFVKMLFP 259 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 259 (323)
...|++++|...++++.-.. +.+..-+..+-+.+--.| +++-|.+.+..-.+-
T Consensus 165 ~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999997652 223444455555443333 566677777766553
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.69 E-value=24 Score=31.93 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=99.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-C-CCC-cccHHHHHHHhcc---hhh---HHHHHHHHHHcCCCCchHHHHHHHH
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEMIVQG-L-IPD-RFMFPSLFKSCAD---IYV---EKQLHSQAIKFGLASDSFLHNTLIN 165 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~-~~ty~~ll~~~~~---~~~---a~~~~~~m~~~g~~~~~~~~~~li~ 165 (323)
.++-+|....+++...++++.|..-- + .++ ...--...-++.+ .|+ |.+++..+....-.++..+|..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44446889999999999999997641 1 111 1111112223333 455 8888888666666677777766555
Q ss_pred HHH----hcCC--CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC----hHHHHHHH----HHHHHhCCc---c
Q 040801 166 MYS----SCWC--LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD----LRTVKRVH----KCVDESGFW---S 228 (323)
Q Consensus 166 ~~~----~~g~--~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~----~~~a~~~~----~~m~~~g~~---p 228 (323)
.|- ..+. ....++|.+.|++--+ +.||..+--.+..-+...|. -.+..++- ....++|.. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 552 2221 1145677777765543 33555443333333333332 22233333 222234432 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
|-..+.++.++..-.|+.++|.+..++|.+. .|..|
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 5556789999999999999999999999976 56677
No 211
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.29 E-value=1.5 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
+|+.|-+.|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888999999999999999874
No 212
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.12 E-value=1.5 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
+|+.|=..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999999843
No 213
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.97 E-value=15 Score=29.41 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHHh---CCccC--
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA--VTLVNVLTARARARDLRTVKRVHKCVDES---GFWSH-- 229 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~-- 229 (323)
...+..+.+-|++.| +.++|++.|.++.+....+.. ..+-.+|+.....+++..+.....+.... |-.++
T Consensus 36 r~~~~~l~~~~~~~G---d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIG---DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 466889999999999 669999999999887655544 56778999999999999999998888643 22222
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 230 --VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 230 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...|..|. +...|++.+|-+.|-+....
T Consensus 113 nrlk~~~gL~--~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLA--NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHH--HHHhchHHHHHHHHHccCcC
Confidence 22333333 33468999999988887654
No 214
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.82 E-value=10 Score=29.22 Aligned_cols=80 Identities=14% Similarity=0.029 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCC---C--CCCcccHHHHHHHhcchhh----HHHHHHHHHHcCCCCchHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQG---L--IPDRFMFPSLFKSCADIYV----EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~ty~~ll~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~ 161 (323)
...|.++.-....+.+...+++++.+..-. + .-+..+|.+++++.++..- +..+|..|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346888888888899999888888883311 1 2456778888888866555 777788887777778888888
Q ss_pred HHHHHHHhc
Q 040801 162 TLINMYSSC 170 (323)
Q Consensus 162 ~li~~~~~~ 170 (323)
.||.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888776654
No 215
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.76 E-value=16 Score=28.97 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=24.3
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHH
Q 040801 112 FYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 112 ~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
+..-+.+.|+.|+...|..++..+.+.|. ...+..+.+.++-+|.......+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~-~~~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQ-FSQLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHhhcccCCcHHHHHHH
Confidence 33444445555555555555555555554 22223334444444444444443
No 216
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=28 Score=30.45 Aligned_cols=209 Identities=12% Similarity=0.035 Sum_probs=119.8
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------ccch----hHHHhcccCC--CCChhhHHH-HHHHHHhCC
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------CADY----HVRLVFSQIS--NPTIYTCNS-IVRGYTNKN 104 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--------y~~~----~a~~lf~~m~--~~~~~~~~~-li~~~~~~g 104 (323)
+.+.+..+-+-.++++|.+++..--++.-..-. |-+. .|..-++++. .|...-|.. --+.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445566666777888888887766554321111 1111 4555555554 333333332 234556677
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcch--hh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHH
Q 040801 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADI--YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 105 ~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~--~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a 179 (323)
.+..|+++...|..+ |+...=..=+.+..+- ++ +..+.++....| +..+.+..-...-+.| +.+.|
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg---qyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG---QYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc---cHHHH
Confidence 777777777766543 2222222223332221 22 444444443222 2222222222334556 77999
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc-------------cChh--------hHHHHH
Q 040801 180 IKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-------------SHVE--------LKTTLM 237 (323)
Q Consensus 180 ~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~--------~~~~li 237 (323)
++-|.+-.+ .|..| ...||..+ +..+.|+.+.|.+...++.++|++ ||+. .-+.++
T Consensus 164 vqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999988877 56654 56787655 445678999999999999888754 2211 234555
Q ss_pred HH-------HHhcCCHHHHHHHHHhccCC
Q 040801 238 DA-------YCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 238 ~~-------~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+ +.+.|+.+.|.+.+-+|.-+
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 54 45779999999999999754
No 217
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.37 E-value=1.1 Score=34.36 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=56.0
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 242 (323)
+|+.+.+.+ .++...++++.....+..-+....+.++..|++.++.++...+++ ..+..-...+++.+-+
T Consensus 13 vi~~~~~~~---~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~ 82 (143)
T PF00637_consen 13 VISAFEERN---QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEK 82 (143)
T ss_dssp CHHHCTTTT----GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHT
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHh
Confidence 455555555 446777777777766655667777888888888877677666665 1222444566677777
Q ss_pred cCCHHHHHHHHHhccC
Q 040801 243 CKFVSRAWDLFVKMLF 258 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~ 258 (323)
.|.+++|.-++.++..
T Consensus 83 ~~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGN 98 (143)
T ss_dssp TTSHHHHHHHHHCCTT
T ss_pred cchHHHHHHHHHHccc
Confidence 7777777777777654
No 218
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.17 E-value=15 Score=30.09 Aligned_cols=73 Identities=21% Similarity=0.154 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH---hCCccChhhHHHHHHHHHhcCCHHHHH
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE---SGFWSHVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~ 250 (323)
++|.+.|-.+...+.- +....-.-+..|-...|.+++.+++....+ .+-.+|+..+..|...|-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4666666666555533 333333334444445566666666666543 222556666666666666666666664
No 219
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.14 E-value=28 Score=30.15 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhc-CCCCChHHHHHHHHHHHH----cCCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc----
Q 040801 159 LHNTLINMYSSC-WCLDQPDEAIKIFYRMEI----ENVKP--NAVTLVNVLTARARARDLRTVKRVHKCVDESGFW---- 227 (323)
Q Consensus 159 ~~~~li~~~~~~-g~~~~~~~a~~~~~~m~~----~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---- 227 (323)
++..+-..|-.. | ++++|++.|++-.+ .| .+ -..++..+...+.+.|++++|..+|++....-..
T Consensus 116 ~~~~lA~~ye~~~~---d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 116 CLKELAEIYEEQLG---DYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 444455555555 5 56788887776643 23 22 2346677778888999999999999988764332
Q ss_pred -cChh-hHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 228 -SHVE-LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 228 -p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.. .|-..+-++...|++..|...+++....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2222 2233344566678999999999987654
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.59 E-value=22 Score=28.15 Aligned_cols=119 Identities=8% Similarity=0.001 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 143 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
+...-+.+.|+.|+...|..+|+.+.+.|. ...+..+...++-+|+......+-.+.. ....+.++=-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~-------~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQ-------FSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHH
Confidence 555666788999999999999999999883 3456667778888888887766655443 3344555544443
Q ss_pred Hh-CCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCC
Q 040801 223 ES-GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQG 276 (323)
Q Consensus 223 ~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 276 (323)
++ | ..+..+++.+...|++-+|.++.+..... .++....+..+....+
T Consensus 86 kRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~ 134 (167)
T PF07035_consen 86 KRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSN 134 (167)
T ss_pred HHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcC
Confidence 32 2 24788889999999999999999886432 2334444554444433
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.50 E-value=6.1 Score=33.96 Aligned_cols=63 Identities=5% Similarity=-0.102 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh----hhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV----ELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 195 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...|...+.-..+.|++++|...|+.+.+. .|+. ..+--+-..|...|++++|...|+.+.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456766666666779999999999999886 3443 45667778899999999999999999865
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.47 E-value=7.9 Score=29.40 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 227 (323)
+.-....-++.+.+.| .-|.-.++..+....+ +++....-.+-.+|.+.|+..++..++.+..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~---kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQG---KKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT----HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444566677777777 4466666666665422 566666667777777777777777777777777654
No 223
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=81.71 E-value=27 Score=28.40 Aligned_cols=97 Identities=12% Similarity=-0.039 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC---CCCCh
Q 040801 122 IPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN---VKPNA 195 (323)
Q Consensus 122 ~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g---~~p~~ 195 (323)
.|+..---.|-.++.+.|+ |...|++....=+.-|....-.+-.+....+ ++..|..++++..+.. -.||
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~---~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ---EFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhcCCccCCCC-
Confidence 3444444444444444444 4445554444334444444444444444444 3345555555544422 1222
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
+--.+-+.+...|....|+.-|+....
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 222333444455555555555555444
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.39 E-value=3.4 Score=33.13 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHhcchhh---HHHHHHHHHHc---CCCCc----hH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR--FMFPSLFKSCADIYV---EKQLHSQAIKF---GLASD----SF 158 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~ll~~~~~~~~---a~~~~~~m~~~---g~~~~----~~ 158 (323)
..+..+-.-|++.|+.++|++.|.+++.....+.. ..+-.+|+.....++ +.......... |-..+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45788999999999999999999999887555543 334555666666666 33333333222 21121 23
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRME 187 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~ 187 (323)
+|..|.....+ ++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r-----~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQR-----DFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhc-----hHHHHHHHHHccC
Confidence 34444433332 6788888776654
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=80.95 E-value=47 Score=30.81 Aligned_cols=138 Identities=6% Similarity=-0.010 Sum_probs=74.9
Q ss_pred HhCCChHHHHHHHHHHHHCC-CCC---C-cccHHHHHHHhcchhh--HHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCC
Q 040801 101 TNKNLHHEAFLFYHEMIVQG-LIP---D-RFMFPSLFKSCADIYV--EKQLHSQAIK-FGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g-~~p---~-~~ty~~ll~~~~~~~~--a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~ 172 (323)
-+.+++.+|.++|.+.-++. -.| . .+--+.+|++|--.+- .+.....+++ .|-.+-...+-.|+. -+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~k- 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQK- 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHhh-
Confidence 35677888888887764431 111 1 2334456666665544 4444444433 333332222333221 1223
Q ss_pred CCChHHHHHHHHHHHHc--CCCC------------ChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccChhhHH
Q 040801 173 LDQPDEAIKIFYRMEIE--NVKP------------NAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWSHVELKT 234 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~ 234 (323)
.+++|++.+..-... +..| |..-=+..++++...|.+.++..+++++... .+..+..+|+
T Consensus 94 --~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 94 --EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred --hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 556777776655543 3222 2233345566777888888888887777653 3447788888
Q ss_pred HHHHHHHhc
Q 040801 235 TLMDAYCKC 243 (323)
Q Consensus 235 ~li~~~~~~ 243 (323)
.++-.+++.
T Consensus 172 ~~vlmlsrS 180 (549)
T PF07079_consen 172 RAVLMLSRS 180 (549)
T ss_pred HHHHHHhHH
Confidence 777666654
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=80.71 E-value=46 Score=31.32 Aligned_cols=158 Identities=12% Similarity=0.005 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC-CCCC-----CcccHHHHHHHhcch--hh-----HHHHHHHHHHcCCCCchHHH
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQ-GLIP-----DRFMFPSLFKSCADI--YV-----EKQLHSQAIKFGLASDSFLH 160 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-----~~~ty~~ll~~~~~~--~~-----a~~~~~~m~~~g~~~~~~~~ 160 (323)
..++...+=.||-+.+++++.+-.+. ++.- -..+|..++..++.. .+ ++++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 45666666778888888888765442 2322 224566666666665 33 88888887764 3777666
Q ss_pred HHHHHH-HHhcCCCCChHHHHHHHHHHHHcC---CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 161 NTLINM-YSSCWCLDQPDEAIKIFYRMEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 161 ~~li~~-~~~~g~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
.-.-.- +...| +.++|++.|++..... -+.....+=-+.-.+....++++|...|..+.+..-. +..+|.-+
T Consensus 270 l~~~gR~~~~~g---~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~ 345 (468)
T PF10300_consen 270 LFFEGRLERLKG---NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHH
Confidence 543322 34445 6799999998755311 1122333334555677788999999999999775422 34444433
Q ss_pred HH-HHHhcCCH-------HHHHHHHHhcc
Q 040801 237 MD-AYCKCKFV-------SRAWDLFVKML 257 (323)
Q Consensus 237 i~-~~~~~g~~-------~~a~~~~~~m~ 257 (323)
.. +|...|+. ++|.++|.+..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 45567777 88888888764
No 227
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.32 E-value=19 Score=25.89 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
+..+-++.+....+-|+.....+.|++|-+.+|+..|.++++-++.+- ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 444444444445566777777777777777777777777777765431 222336665554
No 228
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.24 E-value=8.2 Score=33.43 Aligned_cols=122 Identities=14% Similarity=-0.018 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 159 LHNTLINMYSSCWC----LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 159 ~~~~li~~~~~~g~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
..+.+++++-...+ ....++...+-++++.+| | -..+.+++.+|...|.+.++.. +-|.+-|.
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eG--------N----~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyyc 119 (304)
T KOG0553|consen 53 EGTTLLDSFESAERHPVEILTPEEDKALAESLKNEG--------N----KLMKNKDYQEAVDKYTEAIELD-PTNAVYYC 119 (304)
T ss_pred ccccHHHHHHHhccCcccccChHhHHHHHHHHHHHH--------H----HHHHhhhHHHHHHHHHHHHhcC-CCcchHHH
Confidence 34556666555554 112224666667777666 2 2346789999999999998863 23567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCchhhh-HHHhhhccCCCCCcchhhhhh----hCCCCchh
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHSTAHQI----SGPCPKKA 295 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~l----~~~~~~~~ 295 (323)
.=-.+|++.|..+.|++--+.... ++|..| +|...=..+-..|+.++|..- ++..|+++
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 778899999999999987777665 377777 444433333334455555433 77777764
No 229
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.66 E-value=4.9 Score=22.76 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
..+++.|-..|...|++++|.+++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998743
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.66 E-value=5 Score=23.55 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR 125 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 125 (323)
..|..+-..|...|++++|.++|++..+. .|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 35677888999999999999999999875 4543
No 231
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=78.48 E-value=18 Score=36.72 Aligned_cols=123 Identities=17% Similarity=0.038 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH--HhccCChHHHHHHHHHHHHhCCcc-Chhh
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA--RARARDLRTVKRVHKCVDESGFWS-HVEL 232 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p-~~~~ 232 (323)
+...+..+.+.|+... +++.|..+.-.-.+ .-.--...+|.+-.+ +...++...+..-|.-.... .| |...
T Consensus 525 daeaaaa~adtyae~~---~we~a~~I~l~~~q-ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~ 598 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEES---TWEEAFEICLRAAQ-KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNL 598 (1238)
T ss_pred hhhhHHHHHHHhhccc---cHHHHHHHHHHHhh-hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHH
Confidence 4455667777777766 55777776222111 111222344444433 23445555555444444333 33 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh--HHHhhhccCCCCCcchhhhhh
Q 040801 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW--AMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 233 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~l 287 (323)
|..|..+|.+.|++..|.++|.+...- +|..| .|-.+. ..+..|+.+++...
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~-~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAV-MECDNGKYKEALDA 652 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHH-HHHHhhhHHHHHHH
Confidence 889999999999999999999888765 56665 232222 23345666666443
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=78.06 E-value=46 Score=31.30 Aligned_cols=113 Identities=13% Similarity=0.001 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHcCCCCChHHHHHHH-HHHhccCChHHHHHHHHHHHH--hCCc-cChh
Q 040801 158 FLHNTLINMYSSC--WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL-TARARARDLRTVKRVHKCVDE--SGFW-SHVE 231 (323)
Q Consensus 158 ~~~~~li~~~~~~--g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~a~~~~~~m~~--~g~~-p~~~ 231 (323)
-.|..++..++.. +.. +.+.|.++++++... -|+...|...- +.+...|++++|.+.+++... ..++ ....
T Consensus 230 L~y~~~~~~~~~~~~~~~-~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 230 LWYHLVVPSFLGIDGEDV-PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred HHHHHHHHHHcCCcccCC-CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 3466666666665 334 778999999999763 58888886555 344567999999999997653 2211 2233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCC-CchhhhHHHhhhc
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFPW-NNYGQWAMSATVG 273 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~~~ 273 (323)
.+--+.-.+.-.+++++|.+.|..+.+.. -....++|..+++
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44455666888999999999999998751 1233335555543
No 233
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.81 E-value=2.7 Score=32.09 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=47.8
Q ss_pred HHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc
Q 040801 131 LFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207 (323)
Q Consensus 131 ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 207 (323)
+++.+.+.+. ...+++.+.+.+...+....+.++..|++.++ .++..++++. .+..-...+++.|-+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~---~~~l~~~L~~-------~~~yd~~~~~~~c~~ 82 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDP---YEKLLEFLKT-------SNNYDLDKALRLCEK 82 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTT---CCHHHHTTTS-------SSSS-CTHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCC---chHHHHHccc-------ccccCHHHHHHHHHh
Confidence 3444444333 44556666666655667778888888888763 2566666651 122333466777777
Q ss_pred cCChHHHHHHHHHH
Q 040801 208 ARDLRTVKRVHKCV 221 (323)
Q Consensus 208 ~~~~~~a~~~~~~m 221 (323)
.|.++.+..++.++
T Consensus 83 ~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 83 HGLYEEAVYLYSKL 96 (143)
T ss_dssp TTSHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHc
Confidence 77777766666654
No 234
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.23 E-value=10 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=16.8
Q ss_pred cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 189 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
..+-|+.....+.+++|-+.+|+..|.++++-.+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344555555555555555555555555554443
No 235
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.15 E-value=7 Score=28.05 Aligned_cols=62 Identities=6% Similarity=-0.085 Sum_probs=43.8
Q ss_pred HHHHHHHHhccCC--hHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 198 LVNVLTARARARD--LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 198 ~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
|+.=-..+....+ .-+..+-++.+....+.|++....+.+.++-|.+++..|.++|+-++.+
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333344444333 3356677777778889999999999999999999999999999999865
No 236
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.95 E-value=5.2 Score=20.50 Aligned_cols=22 Identities=18% Similarity=-0.022 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 040801 233 KTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 233 ~~~li~~~~~~g~~~~a~~~~~ 254 (323)
...+-.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455667777777777777665
No 237
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=76.30 E-value=35 Score=26.72 Aligned_cols=94 Identities=9% Similarity=-0.044 Sum_probs=67.0
Q ss_pred ccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 040801 126 FMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTAR 205 (323)
Q Consensus 126 ~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 205 (323)
++|...+.-..+..+|.++|+.+..... -+..-|-.|=-++-..| ++++|++.|......+. -|...+-.+=.++
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g---~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQK---HWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 4455555555555558888888877652 23344555666667777 66899999988877663 4667777788888
Q ss_pred hccCChHHHHHHHHHHHHh
Q 040801 206 ARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~ 224 (323)
...|+.+.|+..|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888664
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.23 E-value=27 Score=34.13 Aligned_cols=144 Identities=9% Similarity=0.020 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHHHHCCCC----CCcccHHHHHHHhcch----hh--HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 040801 103 KNLHHEAFLFYHEMIVQGLI----PDRFMFPSLFKSCADI----YV--EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g~~----p~~~ty~~ll~~~~~~----~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 172 (323)
-|++++|.++|-+|-++.+. ....-|-.++..+-.- .+ -++.+..+-+. ..+...|..-...|.++|+
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc
Confidence 37888898888888665432 1122222222222111 11 22222222221 1334556667777777775
Q ss_pred CCChHHH---HHHHHHHHH--cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 173 LDQPDEA---IKIFYRMEI--ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 173 ~~~~~~a---~~~~~~m~~--~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
.++.-++ ++.|.++.. ....-|....-.+-+++.+.|.-++|.+.+-+. +. | .+-++.|...+++.
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHH
Confidence 5422222 223333322 224445666666777777777777776655432 11 1 23455666667777
Q ss_pred HHHHHHHhcc
Q 040801 248 RAWDLFVKML 257 (323)
Q Consensus 248 ~a~~~~~~m~ 257 (323)
+|.++-+...
T Consensus 896 ~avelaq~~~ 905 (1189)
T KOG2041|consen 896 EAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHhcc
Confidence 7777766554
No 239
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.68 E-value=46 Score=27.27 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=67.3
Q ss_pred HHHHhcchhh--HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc---CCCCChHHHHHHHHHH
Q 040801 131 LFKSCADIYV--EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE---NVKPNAVTLVNVLTAR 205 (323)
Q Consensus 131 ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~ 205 (323)
+.-.+.+.|+ |.+.|-.++..+.--++..--.|-.-|.+. |.+++.+++....+. +-.+|...+.+|...+
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr----D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKR----DPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 3445677788 999999999988777888888888888875 779999999888762 3478999999999999
Q ss_pred hccCChHHHH
Q 040801 206 ARARDLRTVK 215 (323)
Q Consensus 206 ~~~~~~~~a~ 215 (323)
-+.|+.+.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999874
No 240
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.62 E-value=7.9 Score=21.85 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=11.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHH
Q 040801 197 TLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 197 t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444444
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=74.27 E-value=41 Score=26.56 Aligned_cols=83 Identities=10% Similarity=-0.082 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
++++|..+|+-...-+. -|..-|..|-..|-..+++++|...+...-..+. -|+..+-..-.+|...|+.++|...|+
T Consensus 52 k~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 52 RLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 66999999998877442 1333344555555567899999999998866543 244445555678899999999999999
Q ss_pred hccCC
Q 040801 255 KMLFP 259 (323)
Q Consensus 255 ~m~~~ 259 (323)
...++
T Consensus 130 ~a~~~ 134 (165)
T PRK15331 130 LVNER 134 (165)
T ss_pred HHHhC
Confidence 88775
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.19 E-value=41 Score=28.80 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC----CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCcc-Chh
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN----VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-GFWS-HVE 231 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~ 231 (323)
..|+.-++.|- .| ++.+|..-|..-.... +.||..- .|-+++...|+.+.|..+|..+.+. +-.| -+.
T Consensus 143 ~~Y~~A~~~~k-sg---dy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 143 KLYNAALDLYK-SG---DYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHH-cC---CHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 36888887654 45 5689999999988753 3444444 5889999999999999999999764 2122 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..--|-....+.|+.++|..+|++..++
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5566667788999999999999999876
No 243
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.59 E-value=61 Score=28.18 Aligned_cols=129 Identities=10% Similarity=-0.045 Sum_probs=88.7
Q ss_pred CCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 040801 122 IPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV 201 (323)
Q Consensus 122 ~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 201 (323)
.|+..+...++..+- ..+.+. .-|...|--|=..|...| +.+.|..-|..-.+.- .+|...+..+
T Consensus 132 ~~~~~~~~~l~a~Le---------~~L~~n--P~d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL~-g~n~~~~~g~ 196 (287)
T COG4235 132 PPAEQEMEALIARLE---------THLQQN--PGDAEGWDLLGRAYMALG---RASDALLAYRNALRLA-GDNPEILLGL 196 (287)
T ss_pred CCCcccHHHHHHHHH---------HHHHhC--CCCchhHHHHHHHHHHhc---chhHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 366666666654332 333332 346788999999999999 5588988888776632 2455555555
Q ss_pred HHHHhc---cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 202 LTARAR---ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 202 i~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
-+++.. ..+..++..+++++.+.. .-|+..-.-|--.+...|++.+|...|+.|.+....-+.|
T Consensus 197 aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 197 AEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 555543 345677899999998763 2245566666678999999999999999998874444445
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=73.56 E-value=72 Score=28.99 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=77.3
Q ss_pred HHHHh---CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh------------HHHHHHHHHHcCCCCchHHHHH
Q 040801 98 RGYTN---KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV------------EKQLHSQAIKFGLASDSFLHNT 162 (323)
Q Consensus 98 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~------------a~~~~~~m~~~g~~~~~~~~~~ 162 (323)
-++-+ .|+.++|++++.......-.++..||..+-+.|...-. |...|. +...+.||.+.-=.
T Consensus 187 fALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~--kgFe~~~~~Y~GIN 264 (374)
T PF13281_consen 187 FALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYR--KGFEIEPDYYSGIN 264 (374)
T ss_pred HHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHH--HHHcCCccccchHH
Confidence 34455 79999999999997777777888899888665543211 333332 22234455444322
Q ss_pred HHHHHHhcCC-CCChHHHHHHH---HH-HHHcC---CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 163 LINMYSSCWC-LDQPDEAIKIF---YR-MEIEN---VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 163 li~~~~~~g~-~~~~~~a~~~~---~~-m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+...+...|. ...-.+..++- .. ..++| -..|-.-+.++++++.-.|+.++|.+..+.|.+.
T Consensus 265 ~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 265 AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3333333442 11222333333 22 22233 3457778899999999999999999999999876
No 245
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=73.33 E-value=1.2e+02 Score=31.36 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=100.7
Q ss_pred hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHH--hcchhh---HHHHHHH
Q 040801 77 HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKS--CADIYV---EKQLHSQ 147 (323)
Q Consensus 77 ~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~--~~~~~~---a~~~~~~ 147 (323)
.|.+-|+.-. .-|...+....+.|++..+++.|..+. .......| -...++.+-++ +.+.++ +..-|+.
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 7777776554 556788999999999999999999883 22221112 12223333222 223333 4444444
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHH--HHHhccCChHHHHHHHHHHHHh-
Q 040801 148 AIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL--TARARARDLRTVKRVHKCVDES- 224 (323)
Q Consensus 148 m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li--~~~~~~~~~~~a~~~~~~m~~~- 224 (323)
..+.. .-|...|..|..+|..+|+. ..|+++|.+... ++|+.. |...- ..-|..|...++...+......
T Consensus 588 ALR~d-PkD~n~W~gLGeAY~~sGry---~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 588 ALRTD-PKDYNLWLGLGEAYPESGRY---SHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HhcCC-chhHHHHHHHHHHHHhcCce---ehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44333 23678899999999999955 899999987654 456542 22222 2335667777777777766432
Q ss_pred -----CCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 225 -----GFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 225 -----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
+-.--..++-.+...+.-.|-..+|...+++-.
T Consensus 661 s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 661 SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 111123334444444445555555666555543
No 246
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.67 E-value=12 Score=22.74 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=18.6
Q ss_pred ccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
+.|-++++..+++.|.+.|+..+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555556666666666666666666555543
No 247
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.24 E-value=12 Score=22.75 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKS 134 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~ 134 (323)
+...-+.|-.+++..++++|.+.|+..+...|..+++-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34445778888888899999889988888888777764
No 248
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.23 E-value=90 Score=29.53 Aligned_cols=215 Identities=12% Similarity=-0.025 Sum_probs=121.7
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------------ccch-----hHHHhcccCCCCChhhHHHH----H
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADY-----HVRLVFSQISNPTIYTCNSI----V 97 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--------------y~~~-----~a~~lf~~m~~~~~~~~~~l----i 97 (323)
-.+-++..+..+++.|.+-+....... .--. |..| .|.+.-.+.. .-|+.+ .
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r----ad~klIak~~~ 302 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR----ADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH----HHHHHHHHHHH
Confidence 345566666677888888777776655 2222 2222 3333322222 112222 2
Q ss_pred ---HHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCC
Q 040801 98 ---RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDS--FLHNTLINMYSSCWC 172 (323)
Q Consensus 98 ---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~ 172 (323)
.+|.+.++.+.|...|.+-...--.|| +++.+.....+.+..+...- +.|.. -.-.. =..+.+.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~k-Gne~Fk~g- 372 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPD------LLSKLKEAEKALKEAERKAY--INPEKAEEEREK-GNEAFKKG- 372 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHH------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHH-HHHHHhcc-
Confidence 266667888999999988544333332 22222222212222222222 22332 11111 33455666
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHH
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~ 251 (323)
++..|++.+.++.... +-|...|+.---+|.+.|.+..|..--+...+. .|+ ..-|.-=-.++--..++++|.+
T Consensus 373 --dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 373 --DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred --CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999998876 558899999999999999999988776665555 232 1112221223333447888888
Q ss_pred HHHhccCCCCchhhhHHHhhhccCCC
Q 040801 252 LFVKMLFPWNNYGQWAMSATVGPQGL 277 (323)
Q Consensus 252 ~~~~m~~~~~~~~~~~~~~~~~~~~~ 277 (323)
.|++-.+. +|..--++..+..+..
T Consensus 448 ay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 448 AYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888776 5655555555555444
No 249
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.20 E-value=22 Score=28.76 Aligned_cols=60 Identities=7% Similarity=-0.106 Sum_probs=42.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH-hCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 200 NVLTARARARDLRTVKRVHKCVDE-SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..+......++.+......+.+.+ ....|+..+|..++.++...|+.++|.++.+++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333466666666666666543 456788889999999999999999998888887653
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=70.92 E-value=79 Score=29.79 Aligned_cols=76 Identities=18% Similarity=0.045 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc-cChhhHHHHHH
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-SHVELKTTLMD 238 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~ 238 (323)
.-|-.+.-+.| ..++|++.|++|.+..-. -+.-..-.||+++...+...++..++.+-.+...+ .-...|+..+-
T Consensus 263 rRLAmCarklG---r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 263 RRLAMCARKLG---RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHhC---ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 34555666778 558999999999865322 23446778999999999999999999987544332 23556776554
Q ss_pred H
Q 040801 239 A 239 (323)
Q Consensus 239 ~ 239 (323)
.
T Consensus 340 k 340 (539)
T PF04184_consen 340 K 340 (539)
T ss_pred H
Confidence 3
No 251
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.47 E-value=5.8 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFPWN 261 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~~~ 261 (323)
|..+|...|+.+.|.+++++....+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 56778888888888888888876543
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=81 Score=28.22 Aligned_cols=147 Identities=11% Similarity=-0.045 Sum_probs=66.9
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHH----HHHHHHHhcCCCC
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHN----TLINMYSSCWCLD 174 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~ 174 (323)
.+|++.+|-..|+++.+. .+-|...+.-.=.+|.-.|+ ....++.+.. ...+|...|+ .+--++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~g--- 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEECG--- 189 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHhc---
Confidence 345666666666666544 34455555555555555555 3333333322 1233333332 2222334455
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH---hCCccChhhHHHHHHHHHhcCCHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE---SGFWSHVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
.+++|.+.-++-.+-+ +.|.-.-.++-..+--.|++.++.+...+-.. .+...-...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 3356666555444322 23444444444555555566665554433211 1111112223333334445566666666
Q ss_pred HHH
Q 040801 252 LFV 254 (323)
Q Consensus 252 ~~~ 254 (323)
+|+
T Consensus 269 IyD 271 (491)
T KOG2610|consen 269 IYD 271 (491)
T ss_pred HHH
Confidence 665
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=68.63 E-value=52 Score=25.32 Aligned_cols=88 Identities=10% Similarity=-0.104 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 232 (323)
|....|+.-...+-+ | ++++|.+.|+.+...= -+-....--.|+.++.+.+++++|...+++..+..=..-..-
T Consensus 9 ~~~~ly~~a~~~l~~-~---~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 9 SPQELYQEAQEALQK-G---NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 334556665555544 4 6799999999887641 133446667789999999999999999999988653333456
Q ss_pred HHHHHHHHHhcCCH
Q 040801 233 KTTLMDAYCKCKFV 246 (323)
Q Consensus 233 ~~~li~~~~~~g~~ 246 (323)
|...+.+++.....
T Consensus 85 Ya~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 85 YAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777776655443
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=67.94 E-value=70 Score=30.11 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=58.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC-CccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCC-chhhhHHHhhhccCCC
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN-NYGQWAMSATVGPQGL 277 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~~~~~~ 277 (323)
.+-.++-+.|+.++|.+.+.+|.+.- ..-.......||+++...+...++..++.+..+-.. .-..|.|..++-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 35555668899999999999997642 222455778999999999999999999999865322 2344577777755544
Q ss_pred CCc
Q 040801 278 VGR 280 (323)
Q Consensus 278 ~~~ 280 (323)
.++
T Consensus 344 v~d 346 (539)
T PF04184_consen 344 VGD 346 (539)
T ss_pred hcc
Confidence 443
No 255
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=1.1e+02 Score=28.91 Aligned_cols=160 Identities=12% Similarity=0.021 Sum_probs=94.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHH---
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINM--- 166 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~--- 166 (323)
...+-+...+..+++.|.+-|..-.+.. -+..-++..-.++...|. +...-..-.+.|.+ ...-|+.|-.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4556666667777777777777666543 333334444444555555 22222223333321 12223333333
Q ss_pred ----HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHH-------------------------HHHHhccCChHHHHHH
Q 040801 167 ----YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNV-------------------------LTARARARDLRTVKRV 217 (323)
Q Consensus 167 ----~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-------------------------i~~~~~~~~~~~a~~~ 217 (323)
|.+.+ +.+.++..|.+-......||..+=... =..+.+.|++..|..-
T Consensus 304 ~g~a~~k~~---~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 304 LGNAYTKRE---DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhhhhhhHH---hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 33333 556677766665544444433322211 1256678999999999
Q ss_pred HHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 218 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.++++.. +-|...|..---+|.+.|.+..|..=-+...+.
T Consensus 381 YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 381 YTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99988875 447888999999999999999988866655544
No 256
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=67.66 E-value=48 Score=30.99 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH----HHHHHHHHHhcCCCCChHHH
Q 040801 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL----HNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~~~~~a 179 (323)
.++++|++..++-++.+-..+. .-.|++.+++.++.+.|+.||..| ....+.+|+=.| + .++++
T Consensus 208 ~~ldeal~~~~~a~~~~~~~SI----------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g-~-t~ee~ 275 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPISI----------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEG-Y-TVEDA 275 (545)
T ss_pred CCHHHHHHHHHHHHHcCCceEE----------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCC-C-CHHHH
Confidence 4678888888887777653322 224558888999999998887544 334555677777 3 44555
Q ss_pred HHH
Q 040801 180 IKI 182 (323)
Q Consensus 180 ~~~ 182 (323)
.++
T Consensus 276 ~~l 278 (545)
T TIGR01228 276 DKL 278 (545)
T ss_pred HHH
Confidence 543
No 257
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.64 E-value=5.9 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=26.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHh
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC 135 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~ 135 (323)
.-+.|.-..|..+|+.|..+|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556677889999999999998864 77777654
No 258
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=67.36 E-value=1.2e+02 Score=29.22 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=54.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
.+....|+.|++.+. .=+.+.-.++++++... + ...+..++.+....|. +..+..+..+.+-.++...-..+.
T Consensus 307 ~~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~ 381 (574)
T smart00638 307 EPAAAKFLRLVRLLR-TLSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLA 381 (574)
T ss_pred cchHHHHHHHHHHHH-hCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 444455666666553 33445555566665431 1 4566666777766666 555555555544333322222222
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHc-CCCCCh-------HHHHHHHHHHhccC
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNA-------VTLVNVLTARARAR 209 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~-g~~p~~-------~t~~~li~~~~~~~ 209 (323)
......... ..+.++.+.++... .+.+.. .+|.++++-+|...
T Consensus 382 ~~~~~~~~P--t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 382 VLPHTARYP--TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHHhhhcC--CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 222221112 14555555555442 334332 45555555444443
No 259
>PRK05414 urocanate hydratase; Provisional
Probab=66.85 E-value=53 Score=30.88 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH----HHHHHHHHHhcCCCCChHHH
Q 040801 104 NLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL----HNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~~~~~a 179 (323)
.++++|++..++-++.+-..+. +-.|++.+++.++.+.|+.||..| ....+.+|+=.| + .++++
T Consensus 217 ~~Ldeal~~~~~a~~~~~~~SI----------g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G-~-t~ee~ 284 (556)
T PRK05414 217 DDLDEALALAEEAKAAGEPLSI----------GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVG-W-TLEEA 284 (556)
T ss_pred CCHHHHHHHHHHHHHcCCceEE----------EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCC-C-CHHHH
Confidence 4678888888888777643322 224558899999999999997654 333444887777 3 44555
Q ss_pred HHHH
Q 040801 180 IKIF 183 (323)
Q Consensus 180 ~~~~ 183 (323)
.++.
T Consensus 285 ~~lr 288 (556)
T PRK05414 285 AELR 288 (556)
T ss_pred HHHH
Confidence 5543
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=66.77 E-value=18 Score=19.42 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
..|..+=..|...|++++|++.|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888899999999999999998765
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.47 E-value=86 Score=27.07 Aligned_cols=154 Identities=12% Similarity=-0.032 Sum_probs=93.6
Q ss_pred HhCCChHHHHHHHHHHHHCC--CCCCc------ccHHHHHHHhcch-hh--HHHHHHHHHHc--------CCCCc-----
Q 040801 101 TNKNLHHEAFLFYHEMIVQG--LIPDR------FMFPSLFKSCADI-YV--EKQLHSQAIKF--------GLASD----- 156 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~ty~~ll~~~~~~-~~--a~~~~~~m~~~--------g~~~~----- 156 (323)
.+.|+++.|.-++.+..... ..|+. ..|+.-...+.+. .- |..++++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998876532 33332 3444445555554 22 33333332221 22233
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
..+...|+.+|...+..+..++|.++++.+..+... ....|-.-|+.+.+.++.+.+.+++..|...- ......+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 456778899999988877788899999888655322 24555566777777999999999999998752 2123344444
Q ss_pred HHHH---HhcCCHHHHHHHHHhcc
Q 040801 237 MDAY---CKCKFVSRAWDLFVKML 257 (323)
Q Consensus 237 i~~~---~~~g~~~~a~~~~~~m~ 257 (323)
++.+ .....- .|...++.+.
T Consensus 162 l~~i~~l~~~~~~-~a~~~ld~~l 184 (278)
T PF08631_consen 162 LHHIKQLAEKSPE-LAAFCLDYLL 184 (278)
T ss_pred HHHHHHHHhhCcH-HHHHHHHHHH
Confidence 4443 554443 4444444443
No 262
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.83 E-value=26 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
..|..|+.-|-..|..++|.+++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4599999999999999999999999887
No 263
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.80 E-value=65 Score=28.11 Aligned_cols=100 Identities=10% Similarity=0.020 Sum_probs=52.6
Q ss_pred CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCCCChHHHHHHHH-HHh--ccCChHHHHHHHHHHHHhC
Q 040801 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI----ENVKPNAVTLVNVLT-ARA--RARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~----~g~~p~~~t~~~li~-~~~--~~~~~~~a~~~~~~m~~~g 225 (323)
-.-....+-.+-.-||..+ +.+.+.++.++..+ .|.+-|+.. +.|+ ++. ...-+++-.++.+.|.++|
T Consensus 111 E~e~~ea~~n~aeyY~qi~---D~~ng~~~~~~~~~~a~stg~KiDv~l--~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIM---DIQNGFEWMRRLMRDAMSTGLKIDVFL--CKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred chHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhcccchhhHH--HHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 3444566777777788877 44677666655543 354444432 2222 222 2233555666667777777
Q ss_pred CccChh----hHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 226 FWSHVE----LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 226 ~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...+.. +|..+-.+ ...++.+|-.++-+....
T Consensus 186 gDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 186 GDWERRNRYKVYKGIFKM--MRRNFKEAAILLSDILPT 221 (412)
T ss_pred CCHHhhhhHHHHHHHHHH--HHHhhHHHHHHHHHHhcc
Confidence 655432 33333222 234566666666555543
No 264
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.36 E-value=47 Score=23.70 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 210 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
|.-++.+-++.+....+.|++....+-++++-|.+++.-|.++|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333445555555555556666666666666666666666666666554
No 265
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.08 E-value=12 Score=32.50 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=24.4
Q ss_pred CCChH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH
Q 040801 192 KPNAV-TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233 (323)
Q Consensus 192 ~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 233 (323)
.||.. =|+.-|+.-.+.||+++|.+++++.++.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34443 3456666666666666666666666666655444433
No 266
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=1.5e+02 Score=29.38 Aligned_cols=28 Identities=0% Similarity=-0.152 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.-+..-+..+...|+.+-...++-+|..
T Consensus 547 ~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 547 KDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3456677777788887777777766654
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=63.19 E-value=11 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=15.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 040801 229 HVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~a~ 250 (323)
+...|+.|-..|...|+.++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4666777777777777777764
No 268
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.21 E-value=1.6e+02 Score=28.95 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCc----hhhh--
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNN----YGQW-- 266 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~-- 266 (323)
.+..+...+-.-+-+...+..|.++|..|-. ...+++.....+++++|..+-+...+--.+ ...|
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 3445555555666666777777777777643 246778889999999999998887764111 1222
Q ss_pred ---HHHhhhccCCCCCcchhhhhhhCCCCch
Q 040801 267 ---AMSATVGPQGLVGRHSTAHQISGPCPKK 294 (323)
Q Consensus 267 ---~~~~~~~~~~~~~~~~~a~~l~~~~~~~ 294 (323)
.+..+-.++-+.|+..+|.++++.....
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2455555666677777777666655444
No 269
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.68 E-value=14 Score=23.80 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.|...--.+|.+|...|++++|.++.+++.+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445689999999999999999988864
No 270
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=61.13 E-value=30 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
-..+|..|...|+.++|.+.+.++..
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 35677888899999999999988743
No 271
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.78 E-value=19 Score=21.46 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
+-.+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 56789999999999999999886543
No 272
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.94 E-value=1.3e+02 Score=27.54 Aligned_cols=50 Identities=12% Similarity=-0.034 Sum_probs=23.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHHhcCCHHHHHHHHHh
Q 040801 202 LTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+...+..|+.+ +++.+.+.|..|+... -.+.++..++.|+.+-+..+++.
T Consensus 106 L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 106 LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 33344445543 3344444565554322 12344445556666655555543
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.45 E-value=85 Score=24.68 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV---TLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.+.||......-..++.+++..++..+.. .+|... ++...| +.+.|++.+|.++++++.+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 34444444332222255677777776655 344443 333333 34667777777777776554
No 274
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.30 E-value=91 Score=30.88 Aligned_cols=84 Identities=13% Similarity=-0.021 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 241 (323)
--|.-+...| +..+|.++-.+-+ -||...|=.=+.+++..+++++-+++-..++ .+.=|.-++.+|.
T Consensus 689 dTv~~li~~g---~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 689 DTVTTLILIG---QNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred HHHHHHHHcc---chHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 3333344444 3355555544443 4566666556666666666555443332211 1333555556666
Q ss_pred hcCCHHHHHHHHHhccC
Q 040801 242 KCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~ 258 (323)
+.|+.++|...+.+...
T Consensus 756 ~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG 772 (829)
T ss_pred hcccHHHHhhhhhccCC
Confidence 66666666666655543
No 275
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.80 E-value=31 Score=22.14 Aligned_cols=47 Identities=4% Similarity=-0.013 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 210 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.++....+.+.+... ..|-.---.+|.+|...|++++|.+.++++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555433 23444455778888888888888888887764
No 276
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.80 E-value=60 Score=25.00 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 182 IFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 182 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
+.+.+++.|++++..=- .+++.+...++.-.|+.+++++.+.+...+..|.---++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 34455667777666554 467777777777888888888888776666666555556666666543
No 277
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.79 E-value=1.5e+02 Score=27.23 Aligned_cols=166 Identities=8% Similarity=-0.027 Sum_probs=93.4
Q ss_pred ChhhHHHHHHH--HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHh----cchhh---HHHHHHHHHHcCCCCc-hH
Q 040801 89 TIYTCNSIVRG--YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSC----ADIYV---EKQLHSQAIKFGLASD-SF 158 (323)
Q Consensus 89 ~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~----~~~~~---a~~~~~~m~~~g~~~~-~~ 158 (323)
|....-.++.+ -.-.|+.+.|.+-|+.|... .+|--.=|+++ -+.|. +...-+..-+ ..|. ..
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~W 189 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPW 189 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCch
Confidence 33333344433 33469999999999999863 33333333333 23343 4443333332 2333 56
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCCCChH--HHHHHHHHHhcc---CChHHHHHHHHHHHHhCCccChhh
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNAV--TLVNVLTARARA---RDLRTVKRVHKCVDESGFWSHVEL 232 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~-g~~p~~~--t~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~ 232 (323)
.+.+.+...|..| +++.|+++++.-+.. -+++|+. .=..|+.+-... .|...|...-.+ ..++.||..-
T Consensus 190 A~~AtLe~r~~~g---dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvP 264 (531)
T COG3898 190 AARATLEARCAAG---DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVP 264 (531)
T ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccch
Confidence 7889999999999 679999999887663 3555553 223344332211 233333332222 2344555332
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 233 K-TTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 233 ~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
- ..--.+|.+.|++.++-.+++.+=+....|..|
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 2 223357788888888888888776653344444
No 278
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.67 E-value=6 Score=29.91 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=17.2
Q ss_pred hcCCHHHHHHHHHhccCCCCchhhh
Q 040801 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
+.|.-.+|..+|++|.++|+.|+.|
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPddW 131 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDDW 131 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCccH
Confidence 3455566777777777777777777
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.35 E-value=25 Score=18.69 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+|..+-..|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788899999999999987653
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.31 E-value=2.2e+02 Score=28.78 Aligned_cols=138 Identities=16% Similarity=0.100 Sum_probs=87.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCCh
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 176 (323)
+.+.|++++|..-|-+-... +.| ..+|+-+.+..+ -..+++.+.+.|+ .+...-+.|+.+|.+.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~--- 447 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV--- 447 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch---
Confidence 44669999999888765432 233 345666666655 5566677778786 3455668899999999844
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
++-.++.+.-. .|.. ..-..+.+..|-+.+-.++|+.+-..... .......+++ ..|++++|.+.+..|
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 55555443322 3322 22345677777777777777766554333 2344444444 678899999988887
Q ss_pred cC
Q 040801 257 LF 258 (323)
Q Consensus 257 ~~ 258 (323)
.-
T Consensus 517 p~ 518 (933)
T KOG2114|consen 517 PI 518 (933)
T ss_pred CH
Confidence 54
No 281
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.74 E-value=17 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=35.6
Q ss_pred CChhh-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 040801 88 PTIYT-CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL 131 (323)
Q Consensus 88 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 131 (323)
+|..+ ||.-|+...+.||+++|+++++|-.+.|+.--..||-.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 44444 799999999999999999999999999987655555433
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=56.66 E-value=2.6e+02 Score=29.47 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=67.3
Q ss_pred CCCcccHHHHHHHhcchhhHHHHHHHHHHcCC-CCchHHH------HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC
Q 040801 122 IPDRFMFPSLFKSCADIYVEKQLHSQAIKFGL-ASDSFLH------NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194 (323)
Q Consensus 122 ~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~-~~~~~~~------~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 194 (323)
+||...+..+..+|+ +.+.+.+. .+-..+| ..-+.+|-.+| ++++|+.+-.+|.. .-|
T Consensus 932 ~~~~e~~k~i~~~ya---------~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~---dWr~~l~~a~ql~~---~~d 996 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYA---------DHLREELMSDEAALMYERCGKLEKALKAYKECG---DWREALSLAAQLSE---GKD 996 (1265)
T ss_pred ccCHHHHHHHHHHHH---------HHHHHhccccHHHHHHHHhccHHHHHHHHHHhc---cHHHHHHHHHhhcC---CHH
Confidence 577777777766666 33333332 2222222 23456666666 55777776666542 112
Q ss_pred hHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 195 AVT--LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 195 ~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
... =-.|..-+...++.-+|-++..+-.+. +...+..||++-.+++|..+-..-.+
T Consensus 997 e~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 997 ELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 222 145777777788888877777665433 45566777888888888877766553
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.07 E-value=1.9e+02 Score=27.60 Aligned_cols=171 Identities=11% Similarity=0.107 Sum_probs=121.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
..|....-++|.-+..+.+..-..-+-.+|..-|- +...|-.++..|...+. -..+|+.+.+..+ -|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKENGNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhcCchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 34555567788888888888888888888887654 56788888999988877 7888888888765 3455556666
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCC-----CChHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCccChhhHHHHHH
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVK-----PNAVTLVNVLTARARARDLRTVKRVHKCVDE-SGFWSHVELKTTLMD 238 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~-----p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~ 238 (323)
.-|-+ + +.+.+..+|......=+. .=...|.-|+.-. ..+.+...++...+.+ .|...-.+.+.-+-.
T Consensus 140 ~~yEk-i---k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 140 DKYEK-I---KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHH-h---chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 66666 4 447788888777543221 1223566655432 3467777777777754 566667788888888
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCchhhhH
Q 040801 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267 (323)
Q Consensus 239 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 267 (323)
-|....++.+|.+++..+.+. .+.+.|+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~-d~k~~~a 241 (711)
T COG1747 214 KYSENENWTEAIRILKHILEH-DEKDVWA 241 (711)
T ss_pred HhccccCHHHHHHHHHHHhhh-cchhhhH
Confidence 999999999999999988765 2455663
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.97 E-value=99 Score=24.33 Aligned_cols=97 Identities=9% Similarity=-0.113 Sum_probs=59.8
Q ss_pred hccCChHHHHHHHHHHHHhCCccC---hhhHHHHHHHHHhcCCHHHHHHHHHhccCCC-CchhhhHHHhhhccCCCCCcc
Q 040801 206 ARARDLRTVKRVHKCVDESGFWSH---VELKTTLMDAYCKCKFVSRAWDLFVKMLFPW-NNYGQWAMSATVGPQGLVGRH 281 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~ 281 (323)
.+.++.+.++.++.-+.-. .|. ..++... .+.+.|++.+|..+|+++.++. ..+..-.+...+-....-..+
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 4677999999999998764 343 3344443 4678999999999999998763 223222333333333322333
Q ss_pred -hhhhhhhCCCCchhHHHHHHHHHhc
Q 040801 282 -STAHQISGPCPKKAHKLFFFSMLKK 306 (323)
Q Consensus 282 -~~a~~l~~~~~~~~~~~~~~~M~~~ 306 (323)
..|.++++.+.+.....+...+...
T Consensus 97 r~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 97 RRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 2456677777665555555665443
No 285
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=54.85 E-value=23 Score=24.25 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
-|+.++-+.+++.+...+..++.++|+.+-+.+.+.|+
T Consensus 25 ~~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~ 62 (81)
T cd04439 25 FPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGI 62 (81)
T ss_pred cCceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 47778889999999999988777899999999998885
No 286
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=54.38 E-value=1.1e+02 Score=28.51 Aligned_cols=125 Identities=10% Similarity=-0.063 Sum_probs=72.5
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-ccch-hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-CADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-y~~~-~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
.+.++..+.+.|-++.|+++-..-..+ +.--. ++.. .|.++-++.. +...|..|=+...+.|+++-|.+.|.+..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r-FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR-FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH-HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH-hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 567777777777777776664432111 00000 2333 6666666644 56688888888889999998888887765
Q ss_pred HCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 040801 118 VQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~ 185 (323)
. |..|+-.|.-.|+ -.++.+...+.| -+|.-..++.-.| +.++..+++.+
T Consensus 375 d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lg---d~~~cv~lL~~ 427 (443)
T PF04053_consen 375 D---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLG---DVEECVDLLIE 427 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT----HHHHHHHHHH
T ss_pred C---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 4 4555544555555 444444444444 2555566666666 55777777644
No 287
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.09 E-value=93 Score=23.49 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=17.6
Q ss_pred cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 189 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
-.+-|+......-+++|-+-+|+..|.++|+-++
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 288
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=53.91 E-value=1.2e+02 Score=24.67 Aligned_cols=53 Identities=11% Similarity=-0.115 Sum_probs=28.2
Q ss_pred HHHhCCChHHHHHHHHHHHHCCC--CCCcccHHHHHHHhcchhh---HHHHHHHHHHc
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGL--IPDRFMFPSLFKSCADIYV---EKQLHSQAIKF 151 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~ 151 (323)
.+...|++++|.+.|+.+....- +--....-.+..++-+.|+ |...++.+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34467778888888877765411 1111233344555556666 66666665544
No 289
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.83 E-value=56 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
-|..|+.-|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 389999999999999999999999877
No 290
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=77 Score=28.84 Aligned_cols=65 Identities=15% Similarity=-0.014 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-..+++.|.-++.+.+++..|.+.-+...+.+ ++|+...--==.+|...|+++.|...|+++.+-
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34578888888999999999988888887764 233333333335788889999999999999875
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.62 E-value=1e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 175 QPDEAIKIFYRMEIENVKPN---AVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+++++..+++.|.. ++|+ ..+|-..| +...|++++|.++++++.+.
T Consensus 25 d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 25 DPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred CHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 44555555555543 2232 23333333 23555555555555555544
No 292
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.44 E-value=40 Score=22.99 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=29.6
Q ss_pred ccCChHHHHHHHHHHHHhCCccC--hhhHHHHHHHHHhcCCHHHHHHH
Q 040801 207 RARDLRTVKRVHKCVDESGFWSH--VELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
......+|...|....++-..+. -.+..+|+.+|+.-|+++++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777765543332 34567777788887877777654
No 293
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.33 E-value=95 Score=24.59 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=46.3
Q ss_pred HHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 186 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
++..|++.+..-. .+++.+....+.-.|.++++.+.+.+...+..|.---|+.+.+.|-+.+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 4556777766655 46666666677778899999998888777777777777888888876543
No 294
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=53.15 E-value=34 Score=23.53 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=34.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
..-|+.++-+.+++.+...|.....++|..+-+.+.+.|+
T Consensus 25 ~~y~~cF~GselVdWL~~~~~~~sR~eAv~lg~~Ll~~G~ 64 (83)
T cd04443 25 RTYKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGV 64 (83)
T ss_pred eeccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 3467888899999999998877788999999999999885
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.09 E-value=31 Score=18.19 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.|..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667788899999999999988654
No 296
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.11 E-value=1.3e+02 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=30.8
Q ss_pred CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 190 NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 190 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
...|+..+|..++.++...|+.++|.++..++...
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999888764
No 297
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=51.08 E-value=2.1e+02 Score=26.73 Aligned_cols=133 Identities=14% Similarity=0.028 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
..+.+++-+-+.|.++.|+++-.+-..+ |.. ..+.|+-...++. ..-..+...|..|-+...+.|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------FeL----Al~lg~L~~A~~~---a~~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHR--------FEL----ALQLGNLDIALEI---AKELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHH--------HHH----HHHCT-HHHHHHH---CCCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHH--------hHH----HHhcCCHHHHHHH---HHhcCcHHHHHHHHHHHHHcC
Confidence 3566666777777777777665443221 111 1222221111111 112235567777777777777
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHH
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
+.+-|.+-|.+.. -|..|+--|...|+.+...++.+...+.|- ++.-..++.-.|++++..+
T Consensus 362 ---~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 362 ---NIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp ---BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred ---CHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 5567776665543 244555556666677666666666655541 4445555555566666666
Q ss_pred HHHhcc
Q 040801 252 LFVKML 257 (323)
Q Consensus 252 ~~~~m~ 257 (323)
++.+-.
T Consensus 424 lL~~~~ 429 (443)
T PF04053_consen 424 LLIETG 429 (443)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 666544
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.08 E-value=2.3e+02 Score=27.07 Aligned_cols=159 Identities=12% Similarity=0.019 Sum_probs=114.4
Q ss_pred CCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHH
Q 040801 121 LIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197 (323)
Q Consensus 121 ~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t 197 (323)
-..|.....+++..++.+-. ++.+..+|...| -+...|-.+..+|...|+ ++-..+++++.+-.+ |.+.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n----~~l~~lWer~ve~df--nDvv 133 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN----EQLYSLWERLVEYDF--NDVV 133 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc----hhhHHHHHHHHHhcc--hhHH
Confidence 44677788889999988777 888889999887 677889999999999863 577888887777543 4444
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCc-----cChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhhHHHhh
Q 040801 198 LVNVLTARARARDLRTVKRVHKCVDESGFW-----SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQWAMSAT 271 (323)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~ 271 (323)
+.--+.-+...++...+...|..+...=++ .=...|.-|++.- ..+.+....+..++... |-......+...
T Consensus 134 ~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 134 IGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 444444445558888888888887654322 1234666666522 35778888888888765 444455577778
Q ss_pred hccCCCCCcchhhhhhhC
Q 040801 272 VGPQGLVGRHSTAHQISG 289 (323)
Q Consensus 272 ~~~~~~~~~~~~a~~l~~ 289 (323)
+..+....++.+|..+++
T Consensus 212 ~~~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 212 YKKYSENENWTEAIRILK 229 (711)
T ss_pred HHHhccccCHHHHHHHHH
Confidence 888888999999988876
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=50.50 E-value=73 Score=28.53 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=55.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCCh
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 176 (323)
.|.+.|++++|.+.|..-.. +.| |.++|..--.+|.+... | ..+..+..-...-...+.+|++.| .-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA------~AE~DC~~AiaLd~~Y~KAYSRR~---~A 174 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFA------QAEEDCEAAIALDKLYVKAYSRRM---QA 174 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHH------HHHHhHHHHHHhhHHHHHHHHHHH---HH
Confidence 57899999999999976543 346 78888887778887766 2 112222222233345677888876 22
Q ss_pred HHHHHHHHHHHH-----cCCCCChHHHHHHHHH
Q 040801 177 DEAIKIFYRMEI-----ENVKPNAVTLVNVLTA 204 (323)
Q Consensus 177 ~~a~~~~~~m~~-----~g~~p~~~t~~~li~~ 204 (323)
..++.-..+-+. ..++|+..-..-....
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 333333333322 1256775544444333
No 300
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=50.12 E-value=44 Score=27.19 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCC--------------ccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 197 TLVNVLTARARARDLRTVKRVHKCVDESGF--------------WSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 197 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+--+++-.|-+.-++.++.++++.|.+..+ .+.....|.-...|.+.|.+|.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 334677788888899999999999976543 24455678888999999999999999983
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.06 E-value=2.3e+02 Score=26.85 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCCChHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHH---HHhcCCHHHHHHHHHhccCC-CCchhh
Q 040801 191 VKPNAVTL-VNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA---YCKCKFVSRAWDLFVKMLFP-WNNYGQ 265 (323)
Q Consensus 191 ~~p~~~t~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~-~~~~~~ 265 (323)
..|+..|+ +.+++-+-+.|-.++|..++..+...- +|+...|-.+|.- ...+| +..+.+.++.|... |.++..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 35666555 345666667788888888888887652 4577778777763 44455 88889999988765 788999
Q ss_pred h-HHHhhhccCCC
Q 040801 266 W-AMSATVGPQGL 277 (323)
Q Consensus 266 ~-~~~~~~~~~~~ 277 (323)
| -|...-..+|.
T Consensus 533 w~~y~~~e~~~g~ 545 (568)
T KOG2396|consen 533 WMDYMKEELPLGR 545 (568)
T ss_pred HHHHHHhhccCCC
Confidence 9 66665555554
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.69 E-value=1.2e+02 Score=23.56 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc
Q 040801 141 EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207 (323)
Q Consensus 141 a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 207 (323)
++.+++-|.-.. -.+...++-..+ +...| ++++|.++|++..+.+. ...|..-+.++|-
T Consensus 29 ~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg---~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL 88 (153)
T TIGR02561 29 AQAMLDALRVLRPNLKELDMFDGWL--LIARG---NYDEAARILRELLSSAG---APPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHhCCCccccchhHHHH--HHHcC---CHHHHHHHHHhhhccCC---CchHHHHHHHHHH
Confidence 777777776543 234456666666 44555 66888888888876442 2245555555553
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.67 E-value=20 Score=18.79 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
+-.++.+.|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 345677789999999999998764
No 304
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=49.59 E-value=26 Score=24.24 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
-|+.++-+.+++.+...|.....++|.++...+.+.|+
T Consensus 29 y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gi 66 (85)
T cd04441 29 YERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGI 66 (85)
T ss_pred cCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 46777788999999999987789999999999999885
No 305
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=49.42 E-value=1e+02 Score=22.63 Aligned_cols=104 Identities=8% Similarity=0.019 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+..+++.+.+.|+--|..--...+....+.+. .....+-.++..+|+.++.. ...+. .....+.|..+...
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~----~G~~~I~~~L~~kGi~~~~i--~~~l~---~~~~~e~a~~~~~k 81 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRSRLRRKG----KGPRRIRQKLKQKGIDREII--EEALE---EYDEEEEALELAEK 81 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHTT--HHHH--HHHHT---CS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhccccc----ccHHHHHHHHHHHCCChHHH--HHHHH---HhhHHHHHHHHHHH
Confidence 66677777777776666666666766666221 35666667777777654322 22222 22223334444444
Q ss_pred HHHhC-CccChhhHHHHHHHHHhcCC-HHHHHHHH
Q 040801 221 VDESG-FWSHVELKTTLMDAYCKCKF-VSRAWDLF 253 (323)
Q Consensus 221 m~~~g-~~p~~~~~~~li~~~~~~g~-~~~a~~~~ 253 (323)
-.... -.++.....-++..+.+.|- .+.+..++
T Consensus 82 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi 116 (121)
T PF02631_consen 82 KYRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVI 116 (121)
T ss_dssp HHHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHC
T ss_pred HHhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 33322 23455666666666666663 33333333
No 306
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=48.69 E-value=24 Score=23.65 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=29.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~ 140 (323)
.-.|+.+++.+++++..+.|..|.......+..+.-+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888877887777777777777776665
No 307
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.34 E-value=2.6e+02 Score=26.98 Aligned_cols=179 Identities=8% Similarity=0.011 Sum_probs=93.7
Q ss_pred hHHHhcccCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHhcchhh-HHHHHHHHHH-c
Q 040801 77 HVRLVFSQISNPT-IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR--FMFPSLFKSCADIYV-EKQLHSQAIK-F 151 (323)
Q Consensus 77 ~a~~lf~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~ll~~~~~~~~-a~~~~~~m~~-~ 151 (323)
...+++.++.. . ...|..++++....|-.....-+.+.+....+.+.. ..+..++.....-.. ..+.+.++.+ .
T Consensus 327 ~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~ 405 (574)
T smart00638 327 QLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESP 405 (574)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCc
Confidence 44444444444 3 577899999999999877766666666665554321 223333322222222 4444444444 4
Q ss_pred CCCCch-------HHHHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 152 GLASDS-------FLHNTLINMYSSCWCLD---QPDEAIKIFYRMEIENV-KPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 152 g~~~~~-------~~~~~li~~~~~~g~~~---~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
...+.. .+|.+|++-+|....-. ..++..+.+.+...... +-|..--...|.+++..|.......+...
T Consensus 406 ~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~ 485 (574)
T smart00638 406 EVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPY 485 (574)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHh
Confidence 455554 45666777666654210 01344444444333221 12333345678888888886665544444
Q ss_pred HHHhCCccChhhHHHHHHHHHhc--CCHHHHHHHHHhcc
Q 040801 221 VDESGFWSHVELKTTLMDAYCKC--KFVSRAWDLFVKML 257 (323)
Q Consensus 221 m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~ 257 (323)
+. ..-......=...|.++-+. ...+++..++-.+-
T Consensus 486 l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 486 LE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred cC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 43 22233444555666666543 35556665555443
No 308
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.03 E-value=51 Score=24.86 Aligned_cols=66 Identities=8% Similarity=-0.054 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 194 NAVTLVNVLTARARAR--DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+..-|++=-.-|.... |--+..+.++.+..-.+.|++....+-++++-+.+++..|.++|+-++.+
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3334444333444322 33345667777788889999999999999999999999999999999876
No 309
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=47.99 E-value=49 Score=22.36 Aligned_cols=83 Identities=10% Similarity=-0.082 Sum_probs=39.7
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCCCCCh
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSF--LHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~~ 176 (323)
..++.|+++-.. .+.+.+...+. -.+ .+...+..|. .++++.+.+.|..++.. ...+.+...+..|
T Consensus 3 ~A~~~~~~~~~~----~ll~~~~~~~~-~~~-~l~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~----- 70 (89)
T PF12796_consen 3 IAAQNGNLEILK----FLLEKGADINL-GNT-ALHYAAENGN-LEIVKLLLENGADINSQDKNGNTALHYAAENG----- 70 (89)
T ss_dssp HHHHTTTHHHHH----HHHHTTSTTTS-SSB-HHHHHHHTTT-HHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTT-----
T ss_pred HHHHcCCHHHHH----HHHHCcCCCCC-CCC-HHHHHHHcCC-HHHHHHHHHhcccccccCCCCCCHHHHHHHcC-----
Confidence 345556654443 44445544444 112 3333333343 45666667777766553 2223333344444
Q ss_pred HHHHHHHHHHHHcCCCCCh
Q 040801 177 DEAIKIFYRMEIENVKPNA 195 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~ 195 (323)
-.++++-+.+.|..+|.
T Consensus 71 --~~~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 71 --NLEIVKLLLEHGADVNI 87 (89)
T ss_dssp --HHHHHHHHHHTTT-TTS
T ss_pred --CHHHHHHHHHcCCCCCC
Confidence 24455566666766654
No 310
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=47.95 E-value=3e+02 Score=27.54 Aligned_cols=80 Identities=15% Similarity=0.022 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHH
Q 040801 141 EKQLHSQAIKFG-LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 141 a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
+.+.++...+.+ -.|++..|-++-.+..+ +.+.|.+..++...-+-.-+...|.-+.-.+...+++..|+.+.+
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R-----~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQR-----QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHH-----hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 666666665554 67888888888877766 779999999999887667788999988888999999999999988
Q ss_pred HHH-HhC
Q 040801 220 CVD-ESG 225 (323)
Q Consensus 220 ~m~-~~g 225 (323)
... +.|
T Consensus 538 ~al~E~~ 544 (799)
T KOG4162|consen 538 AALEEFG 544 (799)
T ss_pred HHHHHhh
Confidence 875 344
No 311
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=47.20 E-value=43 Score=22.89 Aligned_cols=38 Identities=16% Similarity=-0.019 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
-|+.++-+.+++.+...+.....++|..+-..+.+.|+
T Consensus 25 y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~ 62 (81)
T cd04448 25 YTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGW 62 (81)
T ss_pred cCcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 46777888899999988876688999999999999885
No 312
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=46.58 E-value=12 Score=34.65 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=59.9
Q ss_pred hHHHhcccCC--CCCh----------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHH---HHHHhcchhh-
Q 040801 77 HVRLVFSQIS--NPTI----------YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---LFKSCADIYV- 140 (323)
Q Consensus 77 ~a~~lf~~m~--~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~---ll~~~~~~~~- 140 (323)
.-+++|+.+. .|.+ ..|++|..++.++-.+.+ ..+=.+|...|-..+.+++.. -.++.|+..+
T Consensus 465 ~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~ 543 (650)
T KOG4334|consen 465 GFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQ 543 (650)
T ss_pred hHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhH
Confidence 6678888876 3333 237888888888766643 223456666665555554432 1344555555
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
+.++..+-.-.-++|...+|.+|+..|++.
T Consensus 544 gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 544 GKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 666665555556789999999999999984
No 313
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.26 E-value=1.2e+02 Score=22.59 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 213 TVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 213 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
.+..+|..|..+|+--. ...|...-..+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888887776654 45677777778888888888888764
No 314
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=46.12 E-value=1.1e+02 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
...+|..|...|++++|.+-+.++..
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCC
Confidence 35678889999999999999998864
No 315
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=45.37 E-value=47 Score=23.44 Aligned_cols=39 Identities=8% Similarity=-0.060 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
.-|+.++-+.|++.+...|.....++|+.+-+.+.+.|+
T Consensus 33 ~y~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~gi 71 (93)
T cd04440 33 TYKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNNGF 71 (93)
T ss_pred EcccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 346778889999999999988899999999999998885
No 316
>PHA02798 ankyrin-like protein; Provisional
Probab=44.43 E-value=2.8e+02 Score=26.14 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCCCCcc---cHHHHHHHhcchhh--HHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCCCChHHHH
Q 040801 108 EAFLFYHEMIVQGLIPDRF---MFPSLFKSCADIYV--EKQLHSQAIKFGLASDSFL--HNTLINMYSSCWCLDQPDEAI 180 (323)
Q Consensus 108 ~A~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~~~~a~ 180 (323)
...++.+.+.+.|..+|.. -.+.|..++ ..+. -.++.+.+.+.|..++... ..+.+..+++.|.- .-.
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~-~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~----~~~ 161 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCLL-SNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHH----IDI 161 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHH-HcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCc----chH
Confidence 3467777777888766543 233343333 2222 4566777777786665432 23445556665521 123
Q ss_pred HHHHHHHHcCCCCChHH---HHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 181 KIFYRMEIENVKPNAVT---LVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
++.+-+.+.|..++... ..+.+..+.+.+--..-.++++.+.+.|..++
T Consensus 162 ~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~ 213 (489)
T PHA02798 162 EIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN 213 (489)
T ss_pred HHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc
Confidence 44455566676654431 11233333322111112346666677776554
No 317
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.15 E-value=1.5e+02 Score=29.23 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=72.2
Q ss_pred HHHHHhcchhh---HHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHH-HcCCCCChHHHHHHHH
Q 040801 130 SLFKSCADIYV---EKQLHSQAIKF--GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME-IENVKPNAVTLVNVLT 203 (323)
Q Consensus 130 ~ll~~~~~~~~---a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~-~~g~~p~~~t~~~li~ 203 (323)
+|+.+|...|+ +.++++.+... |-+.=...||..|....+.|.++ .-+...-.++.. ..-+.-|..||..+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~-l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE-LTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 78888888888 66666666543 33344567888888888888773 222322222222 2336668888888888
Q ss_pred HHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHH--HhcCCHHHHHHHHHhcc
Q 040801 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY--CKCKFVSRAWDLFVKML 257 (323)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~ 257 (323)
+-....+-....-++.+..... .|.+++.+ -..=-+++..-+.+++.
T Consensus 112 ~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd~l~ 160 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMDQLN 160 (1117)
T ss_pred hhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHHhcC
Confidence 8777656566666666655421 22233322 22334666666666654
No 318
>PHA03100 ankyrin repeat protein; Provisional
Probab=44.13 E-value=2.7e+02 Score=25.92 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=14.2
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCC
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDP 72 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~ 72 (323)
+.+...++.++.+ +.+.+.+.|..++.
T Consensus 37 t~L~~A~~~~~~~----ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 37 LPLYLAKEARNID----VVKILLDNGADINS 63 (480)
T ss_pred hhhhhhhccCCHH----HHHHHHHcCCCCCC
Confidence 3444445555543 44555566765554
No 319
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=44.07 E-value=1.7e+02 Score=23.70 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 175 QPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
++++|.+.|+++...- -+--....-.+..++.+.|+.+.|...++...+.
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6688888888887642 1222234446677778888888888888887654
No 320
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.82 E-value=3.1e+02 Score=27.36 Aligned_cols=88 Identities=9% Similarity=-0.067 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHH-cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-------------ccChhhHHHHHHHHH
Q 040801 176 PDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF-------------WSHVELKTTLMDAYC 241 (323)
Q Consensus 176 ~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~~~~~li~~~~ 241 (323)
.++..+.+..... +|+..+......|++.. .|++..+..+++.+...|- ..+......|++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4555555554443 57766777776666654 4777777777776654321 113334455666555
Q ss_pred hcCCHHHHHHHHHhccCCCCchhhh
Q 040801 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
+ ++..+++.+++++...|.++...
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFDNA 281 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHHHH
Confidence 5 88888899999888887766543
No 321
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.71 E-value=1.1e+02 Score=21.28 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+..+|..-++.-.....-+. ++|+-....|+..|+.+|..+++.+--+=-.+...++++.|..
T Consensus 9 ~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 34455544443333322222 5666667777777777777777766666667777777777654
No 322
>PRK09857 putative transposase; Provisional
Probab=43.17 E-value=2.2e+02 Score=24.88 Aligned_cols=68 Identities=15% Similarity=-0.009 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchh
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 264 (323)
.-+.+++.-..+.++.++...+++.+.+. .........++.+-+-..|.-+++.++..+|...|.+..
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33567777777788888788888887765 333444555677778788888888888888888876655
No 323
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.40 E-value=2.4e+02 Score=24.77 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+..++....+..-+ +...--.|..+|...| +.+.|..++..+-..--.........=|..+.+.........+-.+
T Consensus 153 a~~~~~~al~~~~~-~~~~~~~la~~~l~~g---~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~ 228 (304)
T COG3118 153 AAPLLKQALQAAPE-NSEAKLLLAECLLAAG---DVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRR 228 (304)
T ss_pred HHHHHHHHHHhCcc-cchHHHHHHHHHHHcC---ChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666665554422 2344556666777777 4467777776654322112222222223333333333333333333
Q ss_pred HHHhCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 221 VDESGFWS-HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 221 m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.-+ .| |...--.|-..|...|+.++|.+.+-.+.++
T Consensus 229 ~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 229 LAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 34 4445556666777777777777766665544
No 324
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.28 E-value=1.9e+02 Score=23.52 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHcCCCC--ChHHHHHH-----HHHHhccCChHHHHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKP--NAVTLVNV-----LTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p--~~~t~~~l-----i~~~~~~~~~~~a~~~~~~m~~ 223 (323)
-.+.|+.+++.+.++--.| -......+ +-.|.+.|.+++|.+++++..+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4566777776666543222 11111112 2245555555555555555544
No 325
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=41.53 E-value=55 Score=22.42 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=33.1
Q ss_pred cCCCCchHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHcCC
Q 040801 151 FGLASDSFLHNTLINMYSSCWC-LDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 151 ~g~~~~~~~~~~li~~~~~~g~-~~~~~~a~~~~~~m~~~g~ 191 (323)
.+.-|+.++-+.+++.+.+.+. ....++|.++.+.|.+.|+
T Consensus 23 ~~~~~~cF~G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~ 64 (83)
T cd04449 23 KGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGL 64 (83)
T ss_pred CccCCcceEhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Confidence 4566788888889998888754 5577899999999998885
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.04 E-value=86 Score=28.11 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=48.6
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
-|.+.| .+++|++-+..-.. +.| |.++|..-..+|.+...+..|+.=-+..... -...+.+|.|.|
T Consensus 106 ~yFKQg---Ky~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 106 TYFKQG---KYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhcc---chhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHH
Confidence 356667 56788887765443 456 8888888888888888888776554444332 223456666655
Q ss_pred CHHHHHHHHHhc
Q 040801 245 FVSRAWDLFVKM 256 (323)
Q Consensus 245 ~~~~a~~~~~~m 256 (323)
.-.+++.-..+.
T Consensus 173 ~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 173 QARESLGNNMEA 184 (536)
T ss_pred HHHHHHhhHHHH
Confidence 444444444333
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=40.34 E-value=41 Score=16.43 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.|..+-..|...|+.++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666777778888888888876654
No 328
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=40.31 E-value=2.6e+02 Score=24.73 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=73.0
Q ss_pred hHHHhcccCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCC
Q 040801 77 HVRLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGL 153 (323)
Q Consensus 77 ~a~~lf~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~ 153 (323)
.|.++|++.. +.|+ |.+|+.+.+.+.-++-+++ ++|+..+-..+-..+...|- -.+++..-...|
T Consensus 185 F~~~lFk~~~~Ek~i---~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~- 252 (412)
T KOG2297|consen 185 FAVKLFKEWLVEKDI---NDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEG- 252 (412)
T ss_pred HHHHHHHHHHhhccH---HHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHH-
Confidence 4555555433 3332 5556655555554444444 36777776666666666665 111111110000
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHHcCCCCCh----HHHHHHHHHHhccCChHHHHHH-HHHHHHhCCc
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIF-YRMEIENVKPNA----VTLVNVLTARARARDLRTVKRV-HKCVDESGFW 227 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~-~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~ 227 (323)
.-.-.-..|.+-..+.. .+++..... ++|++.++ |+. +.|+.++++---. +-+++ -+...++
T Consensus 253 -a~kElq~~L~~q~s~e~---p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWn----Kkeelva~qalrh--- 320 (412)
T KOG2297|consen 253 -ARKELQKELQEQVSEED---PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWN----KKEELVAEQALRH--- 320 (412)
T ss_pred -HHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhc----hHHHHHHHHHHHH---
Confidence 00111122333333333 345554444 56666664 444 3677776654332 22222 2222222
Q ss_pred cChhhHHHHHHHHHhcCCHHHHH
Q 040801 228 SHVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 228 p~~~~~~~li~~~~~~g~~~~a~ 250 (323)
..+|.-|+.++|..|+.+-+.
T Consensus 321 --lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 --LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred --HHhhhHHHHHHhcCChHHHHH
Confidence 456899999999999987654
No 329
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.21 E-value=1.3e+02 Score=28.04 Aligned_cols=17 Identities=6% Similarity=-0.130 Sum_probs=7.1
Q ss_pred HHHHHhcCCHHHHHHHH
Q 040801 237 MDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~ 253 (323)
+...++.|+.+-+..++
T Consensus 180 L~~A~~~~~~~iv~~Ll 196 (480)
T PHA03100 180 LHIAVEKGNIDVIKFLL 196 (480)
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344444444444333
No 330
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=40.05 E-value=1.9e+02 Score=23.08 Aligned_cols=111 Identities=6% Similarity=-0.021 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
..+++..+.+.|+--|..-=.+.|..-.+.| ..-..+..++.+.|+ +..+-...+...+.....+.|..++..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g-----~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG-----KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc-----cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3455555555555555544444555544444 234455555666663 455555666666666666666666555
Q ss_pred HHHh-CCccChhhHHHHHHHHHhcC-CHHHHHHHHHhccC
Q 040801 221 VDES-GFWSHVELKTTLMDAYCKCK-FVSRAWDLFVKMLF 258 (323)
Q Consensus 221 m~~~-g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 258 (323)
-... +..++.....-+...+.+.| ..+.+..++..+..
T Consensus 127 k~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~~ 166 (174)
T COG2137 127 KFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAEE 166 (174)
T ss_pred HhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 4333 34566566666666666666 45566666665543
No 331
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=39.62 E-value=52 Score=22.63 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
-|+.++-+.+++.+...+.....++|+.+-..+.+.|+
T Consensus 25 y~~cF~GselVdWL~~~~~~~sR~eAv~lgq~Ll~~gv 62 (82)
T cd04442 25 YPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDHSI 62 (82)
T ss_pred cCceeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 46677778899999988876678999999999998885
No 332
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.36 E-value=1.1e+02 Score=30.08 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=10.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m 116 (323)
+|+.+|..+|++.++.++++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~ 54 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSF 54 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 3444444444444444444444
No 333
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=38.92 E-value=2.4e+02 Score=23.81 Aligned_cols=157 Identities=8% Similarity=-0.037 Sum_probs=94.5
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHCC
Q 040801 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC---NSIVRGYTNKNLHHEAFLFYHEMIVQG 120 (323)
Q Consensus 44 i~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g 120 (323)
...+...|+++.|...|+.+...-- -+...- -.+..++.+.+++++|...|++..+.-
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP-------------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYP-------------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3334445677777777777766421 111111 235567788899999999998887643
Q ss_pred CCCCcccHHHHHHHhcc--h---------------hh------HHHHHHHHHHcC----CCCchHHH------------H
Q 040801 121 LIPDRFMFPSLFKSCAD--I---------------YV------EKQLHSQAIKFG----LASDSFLH------------N 161 (323)
Q Consensus 121 ~~p~~~ty~~ll~~~~~--~---------------~~------a~~~~~~m~~~g----~~~~~~~~------------~ 161 (323)
-.-...-|...+.+.+. . .+ |...++.+.+.= ..++.... -
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 22223445555555441 0 01 444455554431 11111111 1
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHc--CCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIE--NVKPNAVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
.+-.-|-+.| .+..|..-|+.+.+. +.+......-.++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~---~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRG---AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcC---chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3344577777 568899999998874 555566677788899999999999988877654
No 334
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.84 E-value=84 Score=20.48 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=28.1
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 207 (323)
.|....++.|++.+++-. -.++++..+.+....|. -+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~---AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDH---AIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345556666666666654 44666666666666663 355555555555554
No 335
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=38.84 E-value=3.9e+02 Score=27.32 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=59.8
Q ss_pred HHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH--HHHHHHHH
Q 040801 129 PSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV--TLVNVLTA 204 (323)
Q Consensus 129 ~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~ 204 (323)
..++.++ ..|+. ++.+.+.+.|..++... ..+.++..+..|. .++.++ +.+.|..+|.. .-++-+..
T Consensus 527 ~~L~~Aa-~~g~~-~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~----~~~v~~---Ll~~gadin~~d~~G~TpL~~ 597 (823)
T PLN03192 527 SNLLTVA-STGNA-ALLEELLKAKLDPDIGDSKGRTPLHIAASKGY----EDCVLV---LLKHACNVHIRDANGNTALWN 597 (823)
T ss_pred hHHHHHH-HcCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCh----HHHHHH---HHhcCCCCCCcCCCCCCHHHH
Confidence 3344443 44552 34566667787776543 2345555566662 233333 34455555442 12334444
Q ss_pred HhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
-+..|+.+-+..++ +.+-..+...-...+..-+..|+.+-+..+++.
T Consensus 598 A~~~g~~~iv~~L~----~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 598 AISAKHHKIFRILY----HFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHhCCHHHHHHHH----hcCcccCcccCchHHHHHHHhCCHHHHHHHHHC
Confidence 44556655555444 333333334444566777788888877777764
No 336
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.82 E-value=71 Score=23.12 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=36.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.+++.+...+..-.|.++++.+.+.+...+..|.---++.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3556666666777788889998888777777777777788888887664
No 337
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=38.36 E-value=60 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
++.-+-+.|-+.+...++++|.++|+..+...|+-++.
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34445566788888888888888888888888886665
No 338
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=38.01 E-value=1e+02 Score=25.51 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHcCC-------CCChHHHHHHHHHHhccC---------ChHHHHHHHHHHHHhCCcc-ChhhHHHHH
Q 040801 175 QPDEAIKIFYRMEIENV-------KPNAVTLVNVLTARARAR---------DLRTVKRVHKCVDESGFWS-HVELKTTLM 237 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~-------~p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~p-~~~~~~~li 237 (323)
..|.|+.++++|--..+ .-...-|..+..+|.+.| +.+.-+.+++...+.|++- -++.|+.+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 56788888888854432 236677888899998876 4566777888888888763 467899999
Q ss_pred HHHHhcCCHHHHHHHHHhcc
Q 040801 238 DAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~ 257 (323)
+.=...-++++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 88777888999999888765
No 339
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.86 E-value=1.8e+02 Score=22.22 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHcCCCCChHHHHHHHHHHhcc-CChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 185 RMEIENVKPNAVTLVNVLTARARA-RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 185 ~m~~~g~~p~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.+...|++++..-. .+++.+... +..-.|.++++.+.+.+...+..|.---++.+...|-+.+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34566777666554 455556554 4677888999999888877777777667777888876643
No 340
>PHA02989 ankyrin repeat protein; Provisional
Probab=37.73 E-value=2.3e+02 Score=26.74 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCCCchHH
Q 040801 141 EKQLHSQAIKFGLASDSFL 159 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~ 159 (323)
..++.+.+.+.|..++...
T Consensus 87 ~~~iv~~Ll~~Gadin~~d 105 (494)
T PHA02989 87 IKKIVKLLLKFGADINLKT 105 (494)
T ss_pred HHHHHHHHHHCCCCCCCCC
Confidence 3456666666666655543
No 341
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.26 E-value=2.4e+02 Score=25.42 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHH-HHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK-RVHK 219 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~-~~~~ 219 (323)
|.-+++...+.. ..+...---||..|...| -.+.|.+.|..+.-+.+.-|+..|. +..-+...|....+. ..++
T Consensus 202 Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG---~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r~~~~~~~~~~~~~~~~ 276 (365)
T PF09797_consen 202 AIALLEHALKKS-PHNYQLKLLLVRLYSLLG---AGSLALEHYESLDIKNIQLDTLGHL-ILDRLSTLGPFKSAPENLLE 276 (365)
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHcC---CHHHHHHHHHhcChHHHHHHHhHHH-HHHHHhccCcccccchHHHH
Confidence 555555544432 223333345778888888 5589999999888787777777775 334344444444433 3333
Q ss_pred HHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 220 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
...+.--.-...+-..++.+| +.|.+.+..++.+
T Consensus 277 ~~~~fy~~~~~~~~e~i~~af-~~gsysKi~ef~~ 310 (365)
T PF09797_consen 277 NALKFYDNSEKETPEFIIKAF-ENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHH
Confidence 332211011122333344444 4455555444433
No 342
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.24 E-value=1.9e+02 Score=25.61 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHH
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 241 (323)
-.++++.|...++.|.-..|..+.-.+.+.=.+..+.++|+.+.... .-|..|+..||
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCc 319 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICC 319 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHH
Confidence 35666677777777777777777777777777777777777775432 22555555554
No 343
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.96 E-value=2.5e+02 Score=23.46 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=84.3
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 149 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
...++.+ .|-..|.|+-.-.+. ++++|.+.+-+- .+.|+-. ..++.++...|+.+.|..++..+.-..-
T Consensus 71 ~~f~ip~---~~~~~~~g~W~LD~~-~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~-- 139 (226)
T PF13934_consen 71 RAFGIPP---KYIKFIQGFWLLDHG-DFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS-- 139 (226)
T ss_pred HHhCCCH---HHHHHHHHHHHhChH-hHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--
Confidence 3445543 356677777765543 677888777222 2222222 2488888889999998888877432211
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh-HHHhhhccCCCCCcchhhhhhhCCCCchhHHHHHHHHHhcc
Q 040801 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKV 307 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~M~~~g 307 (323)
+...-..++.. ..+|.+.+|+.+-+...+.. ....| .+...+-..+. +...+..+++..-++.-+.++.+....+
T Consensus 140 s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~-~~~l~e~l~~~~~~~~~--~~~~~~~Ll~LPl~~~EE~~l~~~L~~~ 215 (226)
T PF13934_consen 140 SPEALTLYFVA-LANGLVTEAFSFQRSYPDEL-RRRLFEQLLEHCLEECA--RSGRLDELLSLPLDEEEEQWLEKYLRES 215 (226)
T ss_pred CHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh-hHHHHHHHHHHHHHHhh--hhhHHHHHHhCCCChHHHHHHHHHHccC
Confidence 12222333334 77799999999988887742 12222 22222221111 2344667777777776677777766654
Q ss_pred CC
Q 040801 308 HV 309 (323)
Q Consensus 308 ~~ 309 (323)
-.
T Consensus 216 ~~ 217 (226)
T PF13934_consen 216 PG 217 (226)
T ss_pred CC
Confidence 33
No 344
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.80 E-value=2.1e+02 Score=24.17 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=31.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH----hCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 200 NVLTARARARDLRTVKRVHKCVDE----SGFW-SHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
-+-+-|.+.|++++|.++++.+.. .|+. +...+...+..++.+.|+.++...+-=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566666677776666666631 2322 33444555666666666666665554333
No 345
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=36.56 E-value=1.9e+02 Score=22.11 Aligned_cols=91 Identities=12% Similarity=-0.129 Sum_probs=64.5
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH---HHHh
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD---AYCK 242 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~---~~~~ 242 (323)
+++..| +.+.|++.|.+-..-- .-....||.=..++--.|+.++|..=+++..+..=.-+...+.+.+. .|-.
T Consensus 52 alaE~g---~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAG---DLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhcc---chHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 456777 4589999998776532 34678899999999999999999988888876422223333333333 4667
Q ss_pred cCCHHHHHHHHHhccCCC
Q 040801 243 CKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~~~ 260 (323)
.|+-++|..=|+...+-|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 888888888888766544
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.43 E-value=5.5e+02 Score=27.31 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.|+.-+...|+.-+|-++..+..
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh
Confidence 34444444444444444444443
No 347
>PHA02989 ankyrin repeat protein; Provisional
Probab=36.30 E-value=3.4e+02 Score=25.60 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHCCCCCCccc---HHHHHHHhcchh-hHHHHHHHHHHcCCCC-chHH--HHHHHHHHHhcCCCCChHHHH
Q 040801 108 EAFLFYHEMIVQGLIPDRFM---FPSLFKSCADIY-VEKQLHSQAIKFGLAS-DSFL--HNTLINMYSSCWCLDQPDEAI 180 (323)
Q Consensus 108 ~A~~~~~~m~~~g~~p~~~t---y~~ll~~~~~~~-~a~~~~~~m~~~g~~~-~~~~--~~~li~~~~~~g~~~~~~~a~ 180 (323)
...++.+.+.+.|..+|... .+.|..+..... .-.++.+.+.+.|..+ +... ..+.++.++..+.. -.
T Consensus 86 ~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~-----~~ 160 (494)
T PHA02989 86 KIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSV-----KK 160 (494)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccC-----CH
Confidence 34567777778887665433 333333222111 1346677777888777 3321 22344444433211 12
Q ss_pred HHHHHHHHcCCCCChH---HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHH
Q 040801 181 KIFYRMEIENVKPNAV---TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYC 241 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~ 241 (323)
++.+.+.+.|..++.. ...+-+..+++.+--..-.++.+.+.+.|..++... ..+++..+.
T Consensus 161 ~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~ 226 (494)
T PHA02989 161 DVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFL 226 (494)
T ss_pred HHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHH
Confidence 3444455667665542 112223333322211112345566666777665443 234444433
No 348
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.22 E-value=2e+02 Score=25.43 Aligned_cols=59 Identities=7% Similarity=0.090 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR 207 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 207 (323)
-.++|+.|++.+++|.-+.+.=+--.+...= .+.+++.+++..... ..-|..|+..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF---~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEF---PLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccC---CchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 6788999999999999888765555566655 558999999998753 3338888888885
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=35.99 E-value=2.4e+02 Score=23.76 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~ 183 (323)
.-+-..+++.||-.| ++++|..-+
T Consensus 35 a~~RhflfqLlcvaG---dw~kAl~Ql 58 (273)
T COG4455 35 AGGRHFLFQLLCVAG---DWEKALAQL 58 (273)
T ss_pred ccchhHHHHHHhhcc---hHHHHHHHH
Confidence 334444555555555 334444433
No 350
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.38 E-value=71 Score=20.82 Aligned_cols=52 Identities=6% Similarity=-0.052 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc
Q 040801 191 VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243 (323)
Q Consensus 191 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 243 (323)
+.|....++.+++.+++..-++.+...+.+..+.|. .+..+|---++.++|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777764 4555555555555553
No 351
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.34 E-value=1.3e+02 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=9.4
Q ss_pred hccCChHHHHHHHHHHHHhC
Q 040801 206 ARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g 225 (323)
-++...++|..|.+.|.++|
T Consensus 72 rRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 72 RRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHhCcHHHHHHHHHHHHHhC
Confidence 34444444555555554444
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.08 E-value=2.9e+02 Score=24.34 Aligned_cols=61 Identities=13% Similarity=-0.044 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.+++..-+.|..+|.+.+|.++..+..+.. +.+...|-.|+..|...|+--.|..-++.+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 355566677778888888888877776653 4567777788888888888666666666554
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=34.54 E-value=2.6e+02 Score=27.49 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCC
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 173 (323)
.....+.-.|.++.|.+++.+ ..+...|.+.+...+..+.-..- ...--..+....-.|...-+..||..|++.=..
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC---------------CccChhhHHHHHH
Q 040801 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG---------------FWSHVELKTTLMD 238 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------~~p~~~~~~~li~ 238 (323)
.++.+|++.|--+....-+.....+-..+.-++-..+ +-..++..+...| +..+......++.
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletr--ef~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETR--EFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH----HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccC--CHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Q ss_pred H----HHhcCCHHHHHHHHHhccC
Q 040801 239 A----YCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 239 ~----~~~~g~~~~a~~~~~~m~~ 258 (323)
. +-..|++++|..+|+-..+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhh
No 354
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.36 E-value=1.1e+02 Score=19.66 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=28.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHH-----HhcCCHHHHHHHH
Q 040801 205 RARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY-----CKCKFVSRAWDLF 253 (323)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~a~~~~ 253 (323)
+...|++-+|.++++.+-...-.+....+..||..- .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677778888887775432233555666666542 3557777666553
No 355
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.18 E-value=1.6e+02 Score=20.51 Aligned_cols=37 Identities=5% Similarity=-0.010 Sum_probs=17.6
Q ss_pred ccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 207 RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
..|+.+.|.+++..+. .| +.-|..+++++-..|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhh
Confidence 4455555555555554 32 2334555555555544433
No 356
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.95 E-value=3.5e+02 Score=24.24 Aligned_cols=99 Identities=13% Similarity=-0.052 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCCCChHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCccCh
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI----ENVKPNAVTLVNVLTARAR-ARDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~----~g~~p~~~t~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
-...+-..-.-||+.| |-+.|++.+++-.+ .|.+-|++.+.+=+.-+.. ..-+.+-....+.+.+.|-..+.
T Consensus 103 v~ea~~~kaeYycqig---Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIG---DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 3445566667788888 55777777665543 3666677666544433322 12233334444455566665543
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 231 ----ELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 231 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+|..+-.+ ...++.+|-.+|-+....
T Consensus 180 rNRlKvY~Gly~m--svR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 180 RNRLKVYQGLYCM--SVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhHHHHHHHHHH--HHHhHHHHHHHHHHHccc
Confidence 345544332 345677777777776654
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.83 E-value=2e+02 Score=26.28 Aligned_cols=102 Identities=11% Similarity=0.053 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhccCChHHHHHH
Q 040801 142 KQLHSQAIKFGLASDSFL--HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV--TLVNVLTARARARDLRTVKRV 217 (323)
Q Consensus 142 ~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~ 217 (323)
.++.+.+.+.|..|+... ..+.++..++.|+. + +.+-+.+.|..|+.. ...+.+...+..|+.+.+..+
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~----~---~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~L 87 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDS----E---AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEEL 87 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH----H---HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHH
Confidence 455677778887777644 44566666666632 2 333445556555432 123445555667777765555
Q ss_pred HHHHHHhCCccChh---hHHHHHHHHHhcCCHHHHHHHHH
Q 040801 218 HKCVDESGFWSHVE---LKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 218 ~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
++ .|...+.. .-.+.+..-+..|+.+-+..+++
T Consensus 88 l~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~ 123 (413)
T PHA02875 88 LD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA 123 (413)
T ss_pred HH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 43 33322111 11234444556677665555554
No 358
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=2.6e+02 Score=27.95 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=79.2
Q ss_pred HHHHhCCChHHHHHHHHHHH-HCCCCCCcccHHHHHHHhcchhh-------------------HHHHHHHHHHcCCCCch
Q 040801 98 RGYTNKNLHHEAFLFYHEMI-VQGLIPDRFMFPSLFKSCADIYV-------------------EKQLHSQAIKFGLASDS 157 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~~~-------------------a~~~~~~m~~~g~~~~~ 157 (323)
+.|.-.|++++|+++--.-. .-.+.++...+.+++.-|...-- -+.+++.|.+....-+
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~- 145 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDN- 145 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhh-
Confidence 47888899999987753332 33477888888888766654311 2333333333322111
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHH-HHHcCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCccChhhHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYR-MEIENVKPNAVTLVNVLTARARARD-LRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
-|-.+|...... ..++++++ .......++ ..+.+++.+....+ -+-..+++..+.+.=.+.....|-.
T Consensus 146 -e~~~aiGia~E~-------~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~ 215 (929)
T KOG2062|consen 146 -EYKQAIGIAFET-------RRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFS 215 (929)
T ss_pred -HHHHHHhHHhhh-------hhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeee
Confidence 122222222221 12333333 122222233 33334444433333 4445566666654322222233666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.++|.-..+.+.+.++++++.++
T Consensus 216 vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 216 VCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeEEcCCHHHHHHHHHHHHhc
Confidence 778888889999999999998875
No 359
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.27 E-value=71 Score=23.40 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=35.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.++..+...+..-.|.++++.+.+.|...+..|.---|+.+.+.|-+.+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 4666666777778888899999888877777776666777877776655
No 360
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.12 E-value=1.5e+02 Score=22.17 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 177 DEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+++.++|+.|..+|+.-. ...|..--..+...|++.+|..|+..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 588888988888876544 45677777777888899998888865
No 361
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.06 E-value=2.4e+02 Score=25.24 Aligned_cols=96 Identities=16% Similarity=0.078 Sum_probs=59.9
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhH--HHHHHHHHhCCChHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTC--NSIVRGYTNKNLHHEAFLFYH 114 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~~~ 114 (323)
......++....+++|.++|.+..+.+.+.=. +-..|+.+.| +.+.+.+...||..++.+.++
T Consensus 75 lslvei~l~~~~~~~D~~~al~~Le~i~~~~~---------------~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ld 139 (380)
T KOG2908|consen 75 LSLVEILLVVSEQISDKDEALEFLEKIIEKLK---------------EYKEPDAVIYILTEIARLKLEINDLKEIKKLLD 139 (380)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---------------hhccchhHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33455667777777788888888887765421 1125666665 445667778899999999998
Q ss_pred HHHH-----CCCCCCccc-HHHHH-HHhcchhhHHHHHHH
Q 040801 115 EMIV-----QGLIPDRFM-FPSLF-KSCADIYVEKQLHSQ 147 (323)
Q Consensus 115 ~m~~-----~g~~p~~~t-y~~ll-~~~~~~~~a~~~~~~ 147 (323)
+.++ .|+.|++++ |..+= ..|-+.|+-...|..
T Consensus 140 d~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 140 DLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHH
Confidence 8877 678775543 33332 223334443333333
No 362
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.88 E-value=1.2e+02 Score=21.74 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc--CChHHHHHHHHHHHHhC
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA--RDLRTVKRVHKCVDESG 225 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--~~~~~a~~~~~~m~~~g 225 (323)
..+|..|...| +.++|..-++++.... --......+|..+... ..-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~---d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSG---DVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT----HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 34555666667 5678888777764321 1122233344443333 22333445555555544
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.66 E-value=2.9e+02 Score=23.02 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCCCChHHHHHHHHHHhcc--CChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhH
Q 040801 190 NVKPNAVTLVNVLTARARA--RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWA 267 (323)
Q Consensus 190 g~~p~~~t~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 267 (323)
++.++ |...++++... ++++.|...+.. -.+.|+- -.-++.++.+.|+.+.|..+++...-....+....
T Consensus 74 ~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~ 145 (226)
T PF13934_consen 74 GIPPK---YIKFIQGFWLLDHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALT 145 (226)
T ss_pred CCCHH---HHHHHHHHHHhChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHH
Confidence 45443 45566776644 455555555522 2222222 23588888889999999999999876544443332
Q ss_pred -HHhhhccCCCCCcchhhhhhhCCCCchhHHHHHHHHH
Q 040801 268 -MSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSML 304 (323)
Q Consensus 268 -~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~M~ 304 (323)
+...+ ..+.+-+|.......+++.-...++.+.
T Consensus 146 ~~~~~L----a~~~v~EAf~~~R~~~~~~~~~l~e~l~ 179 (226)
T PF13934_consen 146 LYFVAL----ANGLVTEAFSFQRSYPDELRRRLFEQLL 179 (226)
T ss_pred HHHHHH----HcCCHHHHHHHHHhCchhhhHHHHHHHH
Confidence 23332 2356788888777666654333344443
No 364
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=32.27 E-value=3.2e+02 Score=23.35 Aligned_cols=164 Identities=11% Similarity=-0.006 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHhcchhh---HHHHHHHHH-HcCCCCchHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQG--LIPDRFMFPSLFKSCADIYV---EKQLHSQAI-KFGLASDSFLHNTLIN 165 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~-~~g~~~~~~~~~~li~ 165 (323)
-|+--+..+ +.|++++|.+.|+.+.++- -+-...+.-.++-++-+.++ |....++.. ..+-+||.. |-.-|.
T Consensus 37 LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 37 LYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 355555444 7788888888888887542 11123444445566666666 655555544 445555543 666666
Q ss_pred HHHhcCCCC----ChHHHHHHHHHH---HHc----CCCCChHHHHH------------HHHHHhccCChHHHHHHHHHHH
Q 040801 166 MYSSCWCLD----QPDEAIKIFYRM---EIE----NVKPNAVTLVN------------VLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 166 ~~~~~g~~~----~~~~a~~~~~~m---~~~----g~~p~~~t~~~------------li~~~~~~~~~~~a~~~~~~m~ 222 (323)
+++..-.++ |...+.+-|..+ ..+ ...||...=.. +-+-|.+.|....|..-+++|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 666554443 333333333333 321 23344432222 2234556677777777777776
Q ss_pred HhCCccChhh---HHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 223 ESGFWSHVEL---KTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 223 ~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+. .+-+..+ .-.|..+|-+.|..++|...-.-+..
T Consensus 195 e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 195 EN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 65 3323333 33455677777777777776665554
No 365
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=31.15 E-value=4.6e+02 Score=24.74 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=78.5
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcc
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 126 (323)
+.+.+++..|..||....+..-... -+|+ ..+.-+-+|++|...+ .+.......+..+. .| ..
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~--------f~lk-----eEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s 78 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSP--------FLLK-----EEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KS 78 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcch--------HHHH-----HHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-Cc
Confidence 5566788888888887766532100 0111 0123355677776543 33333344444332 22 34
Q ss_pred cHHHHHHHhcchhh-----HHHHHHHHHHc--CCC------------CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 040801 127 MFPSLFKSCADIYV-----EKQLHSQAIKF--GLA------------SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRME 187 (323)
Q Consensus 127 ty~~ll~~~~~~~~-----a~~~~~~m~~~--g~~------------~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~ 187 (323)
.|-.|..++..-.+ |.+.+..-.+. +.+ +|-..=+..++++...|++ .++..++++|.
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f---~EgR~iLn~i~ 155 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRF---SEGRAILNRII 155 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCc---chHHHHHHHHH
Confidence 45555555443322 44444444333 222 2333346788889999955 78888888886
Q ss_pred Hc----CCCCChHHHHHHHHHHhcc
Q 040801 188 IE----NVKPNAVTLVNVLTARARA 208 (323)
Q Consensus 188 ~~----g~~p~~~t~~~li~~~~~~ 208 (323)
.. ...-|+.+|+-+.-.++++
T Consensus 156 ~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 156 ERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHhhhhhcccHHHHHHHHHHHhHH
Confidence 54 3447888998866655543
No 366
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=30.82 E-value=1e+02 Score=21.23 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHcCC
Q 040801 154 ASDSFLHNTLINMYSSCW-CLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g-~~~~~~~a~~~~~~m~~~g~ 191 (323)
-|+.++-+-+++.+.+.. ...+.++|.++-..+.+.|+
T Consensus 26 ~p~~F~GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~ 64 (84)
T cd04438 26 IPNSFIGSDLVDWLLSHVEGLTDRREARKYASSLLKLGY 64 (84)
T ss_pred CCccccchHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCc
Confidence 467778888999999966 35677899999999999885
No 367
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=30.49 E-value=95 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=33.4
Q ss_pred CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
..|+.++-..+++.++.+.+..+.++|.++-..+.+.|+
T Consensus 24 ~~~~~F~G~~~v~WL~~~~~~~~~~EA~~~~~~ll~~gl 62 (88)
T cd04450 24 TVPYAFTGKAIVQWLMDCTDVVDPSEALEIAALFVKYGL 62 (88)
T ss_pred EcCceeEhHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Confidence 346788889999999999886789999999999998884
No 368
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=30.24 E-value=89 Score=20.70 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=29.9
Q ss_pred CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 153 LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
..++.++...+++.+...+...+.++|.++-+.|.+.|+
T Consensus 16 ~~~~~F~G~e~v~wL~~~~~~~~r~eA~~l~~~ll~~g~ 54 (77)
T smart00049 16 TYPNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLDEGL 54 (77)
T ss_pred ECcceeEcHHHHHHHHHcCCcCCHHHHHHHHHHHHHCCC
Confidence 345667777788888877765577889999998888874
No 369
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.93 E-value=2.6e+02 Score=21.48 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccC
Q 040801 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR 209 (323)
Q Consensus 143 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 209 (323)
++.+.+++.|++++.. --.+++.+...+. .-.|.++++++.+.+..-+..|-=..|+.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~---~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADG---HLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCC---CCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4556667777766543 4556666666652 2468888888877765554444333444444443
No 370
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=29.26 E-value=95 Score=22.21 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=21.2
Q ss_pred hhccCCCCCcchhhhhhhCCCCchhHHHHHHHHHhccCC
Q 040801 271 TVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHV 309 (323)
Q Consensus 271 ~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~M~~~g~~ 309 (323)
.+......++.+...++++.++.+.++.+++.+.+.|+.
T Consensus 27 emq~Alet~~ld~vnkVl~~M~veeAE~~v~~~~esGi~ 65 (99)
T PF08564_consen 27 EMQKALETGDLDEVNKVLGKMPVEEAEYHVERCIESGIW 65 (99)
T ss_dssp T------------HHHHHT--SSSHHHHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhCCcc
Confidence 345555667788888889999988888888999998865
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.14 E-value=3.7e+02 Score=27.64 Aligned_cols=114 Identities=8% Similarity=0.067 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCCcccHHHHHHHhcchhh-----HHHHHHHHHHcCCCCchHHHHH-
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGL---IPDRFMFPSLFKSCADIYV-----EKQLHSQAIKFGLASDSFLHNT- 162 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~ty~~ll~~~~~~~~-----a~~~~~~m~~~g~~~~~~~~~~- 162 (323)
-|-.|+.-|...|+.++|+++|.+....-- .--..-+-.++.-+.+.+. +++.-....+..-.-...+++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 388999999999999999999999876320 0001112224444444443 3333333333321111122222
Q ss_pred -----------HHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc
Q 040801 163 -----------LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA 208 (323)
Q Consensus 163 -----------li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 208 (323)
-+-.|.+.. ..+-+...++.+....-.++..-.+.++.-|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~---~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSK---EPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhh---CcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 222333333 4467788888888776677888888888877754
No 372
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=29.06 E-value=5.1e+02 Score=24.68 Aligned_cols=59 Identities=10% Similarity=-0.046 Sum_probs=36.7
Q ss_pred cccCCCCChhhHHHHHHHHHhCCC----hHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh
Q 040801 82 FSQISNPTIYTCNSIVRGYTNKNL----HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140 (323)
Q Consensus 82 f~~m~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~ 140 (323)
|+-+..+|...|-.+|+.|..... .-...++++.+++.+..||......-|..+.+=|+
T Consensus 3 f~yl~a~na~~YraImR~F~~~~e~~~~~L~~~dV~~~L~~~~~~~dyt~l~~~L~qLv~WgN 65 (494)
T TIGR02677 3 FRHISAENADLYRAIMRSFYAAKERFRTYLRPDDVLAFLRQYLPVADLTELQQALDQLVKWGN 65 (494)
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhccC
Confidence 344456788889999998877543 22356677777777766665444444555544443
No 373
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.70 E-value=5.4e+02 Score=24.84 Aligned_cols=152 Identities=14% Similarity=-0.020 Sum_probs=82.4
Q ss_pred HHhCCChHHHHHHHHHHHH-------CCCCCCcccHHHHHHHhcc----hh-h---HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 100 YTNKNLHHEAFLFYHEMIV-------QGLIPDRFMFPSLFKSCAD----IY-V---EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~ty~~ll~~~~~----~~-~---a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
+....+++.|+.+|+...+ .|.. ....-+=..|.+ .. + |..++....+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 5567789999999988866 4422 233333333333 11 2 7777777777774 4444333332
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHh--ccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA--RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 242 (323)
.-.... -.+...|.++|..-...|. +...-+..+.-... ...+...|...+.+..++|......... .+..+..
T Consensus 335 ~~~g~~--~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~-~~~~~g~ 410 (552)
T KOG1550|consen 335 YETGTK--ERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLG-AFYEYGV 410 (552)
T ss_pred HHcCCc--cccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHH-HHHHHcc
Confidence 222220 1156788888888777773 33333333333333 4457777888888887777322222222 2233333
Q ss_pred cCCHHHHHHHHHhccCCC
Q 040801 243 CKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~~~ 260 (323)
++.+.+.-.+..+.+.+
T Consensus 411 -~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELG 427 (552)
T ss_pred -ccccHHHHHHHHHHHhh
Confidence 66666666665555443
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.68 E-value=2e+02 Score=19.91 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 040801 237 MDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~ 257 (323)
.......|+.++|...+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 344556677777777777654
No 375
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=28.09 E-value=2.8e+02 Score=21.34 Aligned_cols=76 Identities=9% Similarity=-0.002 Sum_probs=43.8
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccH
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF 128 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 128 (323)
+.|+++.|.+.|+.+..+ ++.+ +-....---++.+|.+.|++++|...+++.++..-.--..-|
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g---------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFG---------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCC---------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 345666666666666544 1111 122334455777888888888888888777664322223556
Q ss_pred HHHHHHhcchhh
Q 040801 129 PSLFKSCADIYV 140 (323)
Q Consensus 129 ~~ll~~~~~~~~ 140 (323)
...+.+++.-..
T Consensus 86 a~Y~~gL~~~~~ 97 (142)
T PF13512_consen 86 AYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHHHH
Confidence 666666664443
No 376
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.06 E-value=6.6e+02 Score=25.63 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHH-cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC---C----------ccChhhHHHHHHHHH
Q 040801 176 PDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG---F----------WSHVELKTTLMDAYC 241 (323)
Q Consensus 176 ~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~~~~~li~~~~ 241 (323)
.++..+.+++... +|+.-+......|.+. ..|++..+..+++.....+ + ..|...+..+++++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4555555555443 5666566655555443 3566777776666544322 0 123334455555443
Q ss_pred hcCCHHHHHHHHHhccCCCCchh
Q 040801 242 KCKFVSRAWDLFVKMLFPWNNYG 264 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~~~~~~~ 264 (323)
.|+.++++.+++++..+|.+..
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4788888888888877665543
No 377
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=27.97 E-value=51 Score=22.54 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=15.3
Q ss_pred CCCCCCcccHHHHHHHhcchhh---------HHHHHHHHHHcC
Q 040801 119 QGLIPDRFMFPSLFKSCADIYV---------EKQLHSQAIKFG 152 (323)
Q Consensus 119 ~g~~p~~~ty~~ll~~~~~~~~---------a~~~~~~m~~~g 152 (323)
..+..+..+|..+|++|++.|. -+++++.+.+.+
T Consensus 18 YeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 18 YELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp HTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred HHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 3455677888888888888887 566666666543
No 378
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=27.85 E-value=3.6e+02 Score=23.97 Aligned_cols=92 Identities=16% Similarity=0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC--CCchhhhHHHhhhccCCCCCcchhhhhhhCCCCc
Q 040801 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP--WNNYGQWAMSATVGPQGLVGRHSTAHQISGPCPK 293 (323)
Q Consensus 216 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~ 293 (323)
.+-.+..+.|+..+....+.|+..+. |++..+..-++++.-- +..++...+...+.......-.+-+..+++....
T Consensus 148 ~i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~ 225 (334)
T COG1466 148 WIKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVK 225 (334)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHH
Confidence 34444555666666666666655554 5555555555554321 1123333344444433333333334444444444
Q ss_pred hhHHHHHHHHHhccCCC
Q 040801 294 KAHKLFFFSMLKKVHVP 310 (323)
Q Consensus 294 ~~~~~~~~~M~~~g~~p 310 (323)
++...+ ..+...|..|
T Consensus 226 ~a~~~l-~~L~~~ge~p 241 (334)
T COG1466 226 KALRLL-RDLLLEGEEP 241 (334)
T ss_pred HHHHHH-HHHHHcCCcH
Confidence 444433 4444454443
No 379
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.81 E-value=4.2e+02 Score=23.30 Aligned_cols=124 Identities=11% Similarity=0.044 Sum_probs=71.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHH-------HHHHHhcchhh-------HHHHHHHHHHcCCCCchHHHH
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFP-------SLFKSCADIYV-------EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-------~ll~~~~~~~~-------a~~~~~~m~~~g~~~~~~~~~ 161 (323)
+-+...+.+++++|...|.+....|+..|..+.+ .+...|...|+ ....-+.|....-...+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4456678899999999999999999988875544 44555555555 222222333333223445566
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHhccCChHHHHHHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKP-----NAVTLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
+||..+....+ .+++.+++.....+--.+- -...=.-+|..+.+.|.+..|..+.+.+
T Consensus 89 tLiekf~~~~d--sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSD--SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 66666554432 4455555554443211111 1112235677777888888777654443
No 380
>PHA02859 ankyrin repeat protein; Provisional
Probab=27.78 E-value=2.2e+02 Score=23.24 Aligned_cols=139 Identities=9% Similarity=-0.101 Sum_probs=68.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHH----HHHHHHHHHhcC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFL----HNTLINMYSSCW 171 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g 171 (323)
+...++.|+.+.+..+.+. +-..|..-.+.|..++ ..+. -.++.+.+.+.|..++... ++.|..+....+
T Consensus 25 L~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~-~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~ 99 (209)
T PHA02859 25 LFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCL-EKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNK 99 (209)
T ss_pred HHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHH-HcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCc
Confidence 5556678888887777654 2234554445454443 3232 3566777778887776543 233433333221
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhc-cCChHHHHHHHHHHHHhCCccChhh--HHHHHHHH-HhcC
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAV---TLVNVLTARAR-ARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAY-CKCK 244 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~-~~~g 244 (323)
. .-.++.+-+.+.|..+|.. -.+.+..++.. .++. ++++.+.+.|..++... -++.+..+ ...|
T Consensus 100 ~-----~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~----~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~ 170 (209)
T PHA02859 100 N-----VEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRI----NVIKLLIDSGVSFLNKDFDNNNILYSYILFHS 170 (209)
T ss_pred c-----ccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCH----HHHHHHHHcCCCcccccCCCCcHHHHHHHhcC
Confidence 1 1133444445667666543 22333333322 2333 45555667777665432 23444433 3344
Q ss_pred CHHHH
Q 040801 245 FVSRA 249 (323)
Q Consensus 245 ~~~~a 249 (323)
+.+-.
T Consensus 171 ~~~iv 175 (209)
T PHA02859 171 DKKIF 175 (209)
T ss_pred CHHHH
Confidence 44333
No 381
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.29 E-value=6.1e+02 Score=24.99 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=54.6
Q ss_pred hHHHHHHHHHH-HHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc-------------cChhhHHHHHHHHH
Q 040801 176 PDEAIKIFYRM-EIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-------------SHVELKTTLMDAYC 241 (323)
Q Consensus 176 ~~~a~~~~~~m-~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~~~~~li~~~~ 241 (323)
.++..+.+.+. ..+|+..+......++.. ..|++..+..+++.....|-. .+......+++++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555443 346777777777666663 447888888777765443311 23334445556555
Q ss_pred hcCCHHHHHHHHHhccCCCCchhhh
Q 040801 242 KCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
. |+..++..+++++.+.|.++...
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 4 78889999999998877666543
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.24 E-value=4.4e+02 Score=23.29 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGL 277 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~ 277 (323)
+.+..-..|..+|.+.+|.++-+....- +.+-..| -+...+...|+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 4455556889999999999999887654 2333344 45555555554
No 383
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=27.23 E-value=1e+02 Score=20.50 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=29.0
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
.++.++-..+++.+.......+.++|.++-..|...|+
T Consensus 25 ~~~~F~G~e~v~WL~~~~~~~~r~ea~~~~~~ll~~g~ 62 (81)
T cd04371 25 YPNCFTGSELVDWLLDNLEAITREEAVELGQALLKHGL 62 (81)
T ss_pred CCceeEcHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 45666777788888877765578899999999888774
No 384
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.92 E-value=1.9e+02 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~~ 260 (323)
+++-+.+|.-.++|.++++-|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444445555555555555555443
No 385
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.63 E-value=4.3e+02 Score=22.95 Aligned_cols=169 Identities=11% Similarity=0.068 Sum_probs=92.4
Q ss_pred hHHHhcccC-C-CCChhhHHHHHHHHHhCC-----ChHHHH--------HHHHHH-HHCCCCCC--cccHH-----HHHH
Q 040801 77 HVRLVFSQI-S-NPTIYTCNSIVRGYTNKN-----LHHEAF--------LFYHEM-IVQGLIPD--RFMFP-----SLFK 133 (323)
Q Consensus 77 ~a~~lf~~m-~-~~~~~~~~~li~~~~~~g-----~~~~A~--------~~~~~m-~~~g~~p~--~~ty~-----~ll~ 133 (323)
.+.+++..+ + +.+...|..++..+.... ..+... +++... .+-|..++ ...-. .++.
T Consensus 58 ~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~ 137 (324)
T PF11838_consen 58 DFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLS 137 (324)
T ss_dssp HHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHH
Confidence 666777666 4 677777877776554443 111111 122222 23355554 32222 2244
Q ss_pred Hhcchhh------HHHHHHHHHHcCC----CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 040801 134 SCADIYV------EKQLHSQAIKFGL----ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203 (323)
Q Consensus 134 ~~~~~~~------a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 203 (323)
..| |+ +.+.++.....+. ..+......++....+.|. ++..+.+.++... .++...-..++.
T Consensus 138 ~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~----~~~~~~l~~~~~~--~~~~~~k~~~l~ 209 (324)
T PF11838_consen 138 LAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGD----EEEWDFLWELYKN--STSPEEKRRLLS 209 (324)
T ss_dssp HHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS------HHHHHHHHHHHHT--TSTHHHHHHHHH
T ss_pred Hhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhh----HhhHHHHHHHHhc--cCCHHHHHHHHH
Confidence 444 33 7788888776422 4466666777777777773 2334444444442 346778889999
Q ss_pred HHhccCChHHHHHHHHHHHHhC-CccChhhHHHHHHHHHhcCCH--HHHHHHHHh
Q 040801 204 ARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKCKFV--SRAWDLFVK 255 (323)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~ 255 (323)
+++...+.+...++++.....+ +.+. .. ..++.++...+.. +.+++.+.+
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVRSQ-DI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS-TT-TH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHcCCcccccH-HH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 9999999999999999998865 4433 33 4444555534443 666666553
No 386
>PRK10304 ferritin; Provisional
Probab=26.59 E-value=3.2e+02 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHCCCCC
Q 040801 107 HEAFLFYHEMIVQGLIP 123 (323)
Q Consensus 107 ~~A~~~~~~m~~~g~~p 123 (323)
+.|.++++.+...|..|
T Consensus 52 ~HA~kl~~~i~~rgg~~ 68 (165)
T PRK10304 52 THMQRLFDYLTDTGNLP 68 (165)
T ss_pred HHHHHHHHHHHHcCCCe
Confidence 34444444444444444
No 387
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=26.44 E-value=1.3e+02 Score=19.46 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHHHcC-CCCC
Q 040801 171 WCLDQPDEAIKIFYRMEIEN-VKPN 194 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g-~~p~ 194 (323)
..+ |++.|...|.+++..| +.|+
T Consensus 37 ~~W-d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 37 NNW-DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred cCC-CHHHHHHHHHHHHhcCCCChh
Confidence 346 8999999999999865 4444
No 388
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.25 E-value=2.3e+02 Score=19.74 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 040801 143 QLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 143 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~ 188 (323)
++|+..+..|+..|..+|..+++-+.-.= .++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nV---sP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNV---SPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCC---CHHHHHHHHHHHHc
Confidence 55555555666666666666555544432 34555566655543
No 389
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=26.25 E-value=2.7e+02 Score=21.38 Aligned_cols=55 Identities=18% Similarity=-0.107 Sum_probs=46.1
Q ss_pred HHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
++...|+++.|.+.|......- +-....||.=..+|--.|+.++|.+=+++..+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5678899999999999887652 336788999999999999999999988887653
No 390
>PF14162 YozD: YozD-like protein
Probab=26.20 E-value=71 Score=19.60 Aligned_cols=20 Identities=20% Similarity=0.487 Sum_probs=16.2
Q ss_pred chhHHHHHHHHHhccCCCCe
Q 040801 293 KKAHKLFFFSMLKKVHVPGV 312 (323)
Q Consensus 293 ~~~~~~~~~~M~~~g~~p~~ 312 (323)
.+-++.+|.++.++|+.|+.
T Consensus 11 EEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHHccCCCcH
Confidence 44577888999999999974
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=26.05 E-value=2.9e+02 Score=23.27 Aligned_cols=77 Identities=10% Similarity=-0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCccChhhHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES--GFWSHVELKTTL 236 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l 236 (323)
|.+.-|+.+.+.+ ..+++++..++=.+.+ ..|..+=..+++-+|-.|++++|..=++..-+. ...+...+|..+
T Consensus 3 Tl~~t~seLL~~~---sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDN---SLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhc---cHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 4456677888888 4589988887766554 345666677899999999999998777766543 334556778777
Q ss_pred HHH
Q 040801 237 MDA 239 (323)
Q Consensus 237 i~~ 239 (323)
|++
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 764
No 392
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.04 E-value=2.9e+02 Score=22.70 Aligned_cols=59 Identities=8% Similarity=-0.051 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhC-CccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 197 TLVNVLTARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 197 t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
..++++..|.-.||++.|.++|.-+.... +... ..|..=+.-+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHHHHH
Confidence 44556666666666666666666665432 2211 23555555555555444443444444
No 393
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.02 E-value=84 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcC
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSL 68 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~ 68 (323)
++++.+.+|.--++|+.|.+.|.++|=
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 578889999999999999999999983
No 394
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.82 E-value=1e+02 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=11.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
+..+...+.+-.|.++++++.+.+.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~ 31 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGP 31 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCC
Confidence 3334444444445555555554443
No 395
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.72 E-value=1.9e+02 Score=23.64 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC--------------CCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENV--------------KPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~--------------~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
--++|-.|.+.- ++.++.++++.|.+..+ .+--..-|.....|.++|.++.|..++++
T Consensus 135 GiS~m~~Yhk~~---qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTL---QWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345666777766 66888888888865432 35556888899999999999999999884
No 396
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=25.53 E-value=53 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhc----CCHHHHHHHHHhccC
Q 040801 231 ELKTTLMDAYCKC----KFVSRAWDLFVKMLF 258 (323)
Q Consensus 231 ~~~~~li~~~~~~----g~~~~a~~~~~~m~~ 258 (323)
.++..|++.|.+. +++.+|.+++++|.+
T Consensus 11 ~~v~~lv~~~~~~gF~a~~l~~A~~i~~~m~~ 42 (301)
T TIGR00321 11 ITVCELIDSMGRTGFQGRRIGEADKIWKEMCF 42 (301)
T ss_pred CcHHHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence 3677888888773 478888888888874
No 397
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.51 E-value=5.6e+02 Score=24.04 Aligned_cols=37 Identities=3% Similarity=-0.070 Sum_probs=19.3
Q ss_pred HhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 223 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.+.||..+.|=+-..|+..-..+-...+|+-..+.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq 212 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ 212 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555555554444
No 398
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=25.32 E-value=73 Score=28.60 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHhc----CCHHHHHHHHHhccC
Q 040801 230 VELKTTLMDAYCKC----KFVSRAWDLFVKMLF 258 (323)
Q Consensus 230 ~~~~~~li~~~~~~----g~~~~a~~~~~~m~~ 258 (323)
..++..|++.|.+. +++.+|.+++++|.+
T Consensus 23 ~~~v~~Lv~~~~~~gF~A~~L~~A~~i~~~Ml~ 55 (347)
T PRK02492 23 SFDAVPIIDAMGKMAFQSRDLARAADIYDMMLQ 55 (347)
T ss_pred CCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHh
Confidence 44788888888774 478888888888864
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.02 E-value=1.6e+02 Score=23.85 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=39.5
Q ss_pred hHHHhcccCC----CCC--hh-----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh
Q 040801 77 HVRLVFSQIS----NPT--IY-----TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV 140 (323)
Q Consensus 77 ~a~~lf~~m~----~~~--~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~ 140 (323)
.|.-+|+.+. .|. .. .=-..+-.|.+.|.+++|.+++++..+. |+......-|....+..+
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 6777777665 221 11 1233566899999999999999998873 666555555555544444
No 400
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.97 E-value=2.1e+02 Score=27.68 Aligned_cols=65 Identities=8% Similarity=-0.075 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+...-..+++.|.+.|-.+.+..+.+.+-.+-+. ..-|..-+.-+.++|+.+.+..+.+.+.+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45566678888899999988888888887554322 345677777788888888887777776643
No 401
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=24.70 E-value=23 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHh
Q 040801 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 206 (323)
.++.+.+|+.|-.+...|....||-.|+-|.
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 3688999999998888898888887776554
No 402
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.48 E-value=85 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=24.2
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhc
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTS 67 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~ 67 (323)
+.|+.+.+|..-+.|+.|.+.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 57888999999999999999999998
No 403
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=24.46 E-value=4.2e+02 Score=22.08 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCChhhHHHHHHHHHhCCC----hHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh----HHHHHHHHHHcCCCCchH
Q 040801 87 NPTIYTCNSIVRGYTNKNL----HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV----EKQLHSQAIKFGLASDSF 158 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~----a~~~~~~m~~~g~~~~~~ 158 (323)
.-+..|+..||..+-+... +.|-.+||+.+.+ |..+.+.+=+.+. ..++-+-+...|+..+..
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~---------Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ---------WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH---------HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHH
Confidence 4577888999998877754 7777888877765 5556666655544 778888888999999999
Q ss_pred HHHHHHHHHHhcC
Q 040801 159 LHNTLINMYSSCW 171 (323)
Q Consensus 159 ~~~~li~~~~~~g 171 (323)
.++.|++-|.+.+
T Consensus 161 ~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 161 FYNLLVRKYDRFG 173 (221)
T ss_pred HHHHHHHHhcccc
Confidence 9999999999763
No 404
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.29 E-value=1.7e+02 Score=18.14 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=24.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLF 132 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll 132 (323)
-++.+.|++++|.+..+.+.+ +.|+..-...|-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 478899999999999999887 467766655553
No 405
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=24.29 E-value=5.4e+02 Score=23.35 Aligned_cols=207 Identities=10% Similarity=-0.046 Sum_probs=107.6
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCC----ccch-----------------------hHHHhcccCC---CCChhhHHHH
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDP----CADY-----------------------HVRLVFSQIS---NPTIYTCNSI 96 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~----y~~~-----------------------~a~~lf~~m~---~~~~~~~~~l 96 (323)
+-+.|.++.|..=|+...+..-+.+. +++. .|.+....+. .-|...|-.-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 55667888888888888776543333 2222 2222222221 3455555555
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHH-cCCCCchHHH----HH-------HH
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIK-FGLASDSFLH----NT-------LI 164 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~-~g~~~~~~~~----~~-------li 164 (323)
-.+|...|++..|+.=++...+- -.-+..++--+-..+...|+++.-+.++++ ..+.||...+ -. |.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 66677777777766443333221 112333444444445555553333333332 1344543221 11 11
Q ss_pred HH--HHhcCCCCChHHHHHHHHHHHHcCCCCChHHH---HHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHH
Q 040801 165 NM--YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTL---VNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMD 238 (323)
Q Consensus 165 ~~--~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 238 (323)
++ ....+ ++-++++-.+......-+-..++| ..+=+++...+++.+|.+.-.+..+. .|| +.++.-=.+
T Consensus 275 s~e~~ie~~---~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 275 SAEQAIEEK---HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHhhh---hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 11 11112 334454444444433222122333 33344555667788888777776654 454 667777777
Q ss_pred HHHhcCCHHHHHHHHHhccCC
Q 040801 239 AYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 239 ~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+|.....+++|..=|+...+-
T Consensus 350 A~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc
Confidence 888888888888888877653
No 406
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=24.06 E-value=2.3e+02 Score=22.62 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=16.4
Q ss_pred cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 189 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.|+.|...++..++..+++.=.++.+.++|+.+...
T Consensus 161 ~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~e 196 (199)
T smart00164 161 LGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAE 196 (199)
T ss_pred cCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Confidence 344444444444444444444444444444444333
No 407
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=23.99 E-value=6.9e+02 Score=24.44 Aligned_cols=127 Identities=15% Similarity=0.120 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCcccHHHH-HHHhcchhh---HHHHHHHHHHcC---CCCchHHHHH
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQ----GLIPDRFMFPSL-FKSCADIYV---EKQLHSQAIKFG---LASDSFLHNT 162 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~ty~~l-l~~~~~~~~---a~~~~~~m~~~g---~~~~~~~~~~ 162 (323)
-.+++.+.+.+... |....++..+. +..+-...|..+ +..+...++ |.+.++.....- -.|-..++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 35667777777666 88888886553 233333444444 322322234 666666665432 4566677777
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCC---------CCChHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIENV---------KPNAVTLVNVLTARA--RARDLRTVKRVHKCVD 222 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~g~---------~p~~~t~~~li~~~~--~~~~~~~a~~~~~~m~ 222 (323)
++.+....... ..+++.+..+++..... .|-..+|..+++.++ ..|+++.+...++.+.
T Consensus 183 l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 183 LSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776655433 45788888887744322 457788888888776 5567667776666554
No 408
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=23.94 E-value=6.1e+02 Score=23.79 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHH-HcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh--------------CCccChhhHHHHHHHH
Q 040801 176 PDEAIKIFYRME-IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES--------------GFWSHVELKTTLMDAY 240 (323)
Q Consensus 176 ~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--------------g~~p~~~~~~~li~~~ 240 (323)
.++..+++.+.. ..|+.-+......++... .|++..|...++.+... +..+....| .|++ .
T Consensus 182 ~~el~~~L~~~~~~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf-~L~~-a 257 (451)
T PRK06305 182 EETIIDKLALIAKQEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLY-TLDE-A 257 (451)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHH-HHHH-H
Confidence 344444554442 346655665555555443 46677776666654321 111112222 3444 3
Q ss_pred HhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 241 CKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
.+.++.++|..+++++...|.++...
T Consensus 258 i~~~d~~~al~~l~~L~~~g~~~~~i 283 (451)
T PRK06305 258 ITTQNYAQALEPVTDAMNSGVAPAHF 283 (451)
T ss_pred HHcCCHHHHHHHHHHHHHcCcCHHHH
Confidence 45577888888888887666555433
No 409
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=5.8e+02 Score=23.44 Aligned_cols=137 Identities=13% Similarity=0.007 Sum_probs=85.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHH
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
.|.+.|++..|..-|+.-... -.....++ . ++..+.. ..-..+++.|.-+|.+.+ ++.+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~--l~~~~~~~----------~-----ee~~~~~-~~k~~~~lNlA~c~lKl~---~~~~ 275 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSF--LEYRRSFD----------E-----EEQKKAE-ALKLACHLNLAACYLKLK---EYKE 275 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHH--hhccccCC----------H-----HHHHHHH-HHHHHHhhHHHHHHHhhh---hHHH
Confidence 567888888888888775431 00000000 0 1111111 123566888888888887 6688
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh-hHHHHHHHHHhcCCH-HHHHHHHHhc
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE-LKTTLMDAYCKCKFV-SRAWDLFVKM 256 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~-~~a~~~~~~m 256 (323)
|++.=......+ .+|+...=-==++|...|+++.|+..|..+.+. .|+-. .-+.|+..--+..+. ++..++|..|
T Consensus 276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777655 456655444557888899999999999999886 56444 444555555554444 3447778887
Q ss_pred cCC
Q 040801 257 LFP 259 (323)
Q Consensus 257 ~~~ 259 (323)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 410
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=23.46 E-value=6.2e+02 Score=25.84 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=79.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccH--HHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHh
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMF--PSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSS 169 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty--~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~ 169 (323)
..++. .+..|+.+ +.+.+.+.|..||.... .+.|+..+..|. .++.+.+.+.|..++... .++-+..-+.
T Consensus 527 ~~L~~-Aa~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~-~~~v~~Ll~~gadin~~d~~G~TpL~~A~~ 600 (823)
T PLN03192 527 SNLLT-VASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGY-EDCVLVLLKHACNVHIRDANGNTALWNAIS 600 (823)
T ss_pred hHHHH-HHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCh-HHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence 34444 44677765 45556677877766432 233444444454 344556667777665432 2333444445
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH--HHHHHHHHhcCCHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK--TTLMDAYCKCKFVS 247 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~ 247 (323)
.|+ .+..+++- ..+-..+..+-.+.+...+..|+.+.++.++ +.|..++.... .+-++.-++.|+.+
T Consensus 601 ~g~----~~iv~~L~---~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll----~~Gadin~~d~~G~TpLh~A~~~g~~~ 669 (823)
T PLN03192 601 AKH----HKIFRILY---HFASISDPHAAGDLLCTAAKRNDLTAMKELL----KQGLNVDSEDHQGATALQVAMAEDHVD 669 (823)
T ss_pred hCC----HHHHHHHH---hcCcccCcccCchHHHHHHHhCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 553 34455443 2332233333445677778888887665554 56777654432 23445556778888
Q ss_pred HHHHHHHh
Q 040801 248 RAWDLFVK 255 (323)
Q Consensus 248 ~a~~~~~~ 255 (323)
-+.-+++.
T Consensus 670 iv~~Ll~~ 677 (823)
T PLN03192 670 MVRLLIMN 677 (823)
T ss_pred HHHHHHHc
Confidence 77777754
No 411
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.35 E-value=2.8e+02 Score=19.63 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040801 195 AVTLVNVLTARARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 195 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 225 (323)
..|+..|+.++...|.-..|+.+-+.+.+.|
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3445666666666666666666655555544
No 412
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.27 E-value=5.2e+02 Score=23.79 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCCchHH---HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHH--H--HHhccCChHHHH
Q 040801 143 QLHSQAIKFGLASDSFL---HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVL--T--ARARARDLRTVK 215 (323)
Q Consensus 143 ~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li--~--~~~~~~~~~~a~ 215 (323)
-+++.+.+.|+.|+..+ -.+++.++...+ ..++..+++.+- ..+...+...- . .....+......
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~---~~~e~~~~l~~~-----~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVH---TDEELLRFLDGD-----GIDLSAFNRLRGKKSLGYSGYGWLGTLG 171 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcC---CHHHHHHHHhcc-----chhhhhhhhhccccccccccccccchHH
Confidence 56777889999998755 456777777776 336777766542 11222221110 0 011111222233
Q ss_pred HHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 216 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
..+....+.|...|...+...++.+...-.+++|.+-
T Consensus 172 ~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~r 208 (391)
T cd07229 172 RRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYAR 208 (391)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHh
Confidence 4445555667777777777777777777777777643
No 413
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=23.01 E-value=3.1e+02 Score=20.04 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHhcc-hhh-HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHH
Q 040801 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD-IYV-EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 106 ~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~-~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~ 183 (323)
.+.+.++++.+.+.|..-|..--..++....+ .+. ...+-..+.+.|+.++. ....+. ..+..+.|.++.
T Consensus 8 ~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~--i~~~l~------~~~~~e~a~~~~ 79 (121)
T PF02631_consen 8 EEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREI--IEEALE------EYDEEEEALELA 79 (121)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHH--HHHHHT------CS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHH--HHHHHH------HhhHHHHHHHHH
Confidence 45667788999999998666666677787776 444 88888999999976543 233333 232345666666
Q ss_pred HHHHHcC-CCCChHHHHHHHHHHhccC
Q 040801 184 YRMEIEN-VKPNAVTLVNVLTARARAR 209 (323)
Q Consensus 184 ~~m~~~g-~~p~~~t~~~li~~~~~~~ 209 (323)
+.-.... -.++.....-++..+.+.|
T Consensus 80 ~kk~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 80 EKKYRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHHHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 5554433 3456666666666666655
No 414
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.72 E-value=7e+02 Score=24.08 Aligned_cols=118 Identities=9% Similarity=-0.001 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-------cCCCCChHHHHHHHHHHhccC----
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-------ENVKPNAVTLVNVLTARARAR---- 209 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~-------~g~~p~~~t~~~li~~~~~~~---- 209 (323)
+.++++...+.|. ......-.++...+..|...|.+.|+.+|+.... .| +.....-+=..|.+..
T Consensus 231 a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 231 AFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCcc
Confidence 5555555555552 2222233333333323333366777777766655 33 2223333333443322
Q ss_pred -ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh-cCCHHHHHHHHHhccCCCCch
Q 040801 210 -DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK-CKFVSRAWDLFVKMLFPWNNY 263 (323)
Q Consensus 210 -~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~ 263 (323)
+...|..++....+.|. |+....-..+..... ..+...|.+.|....+.|...
T Consensus 307 ~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~ 361 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL 361 (552)
T ss_pred ccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH
Confidence 45556666666666653 232222222222222 234566777776666665433
No 415
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.56 E-value=6.5e+02 Score=24.00 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
..+++..++...-.|+.+..-+.| +...| +++.++..+.... .-+.....+-..+++...+.|+++.|..+-+-
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i--~~~lg---~ye~~~~~~s~~~-~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVI--FSHLG---YYEQAYQDISDVE-KIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHH--HHHhh---hHHHHHHHhhchh-hhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 344555555554556655555555 33444 5577777665432 22445667777778888888888888777777
Q ss_pred HHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 221 VDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 221 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
|....++- +.....-...--..|-++++...|+...
T Consensus 383 ~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 383 MLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 76655542 2222222222233466777777776653
No 416
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.30 E-value=96 Score=20.57 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=12.3
Q ss_pred CChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 209 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
++.+.+.+++++..+.|+.|.....+.+..
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p 44 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMP 44 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444444444444444444333333333
No 417
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=22.04 E-value=3.2e+02 Score=19.84 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=38.0
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhh
Q 040801 203 TARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSAT 271 (323)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 271 (323)
..+...|+++.|.++.+.+ ..||...|-+|-. .|.|..+++..-+.+|..+| +|..-.+...
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faag 108 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVAG 108 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 4555677777777766654 4677777766544 46677777777776776654 3433333333
No 418
>PLN03025 replication factor C subunit; Provisional
Probab=22.01 E-value=5.5e+02 Score=22.56 Aligned_cols=77 Identities=8% Similarity=-0.062 Sum_probs=41.6
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-C-----------CCCChHHHHHHHHHHhccCChHHHHH
Q 040801 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-N-----------VKPNAVTLVNVLTARARARDLRTVKR 216 (323)
Q Consensus 149 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~-g-----------~~p~~~t~~~li~~~~~~~~~~~a~~ 216 (323)
.+.|+..+......++... .| ++..++..++..... + -.+.......++.++. .++++.|..
T Consensus 172 ~~egi~i~~~~l~~i~~~~--~g---DlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~~~~~~a~~ 245 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIFTA--DG---DMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-KGKFDDACD 245 (319)
T ss_pred HHcCCCCCHHHHHHHHHHc--CC---CHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 4456666666666665543 24 556666666533211 0 0122233334444443 467777777
Q ss_pred HHHHHHHhCCccChh
Q 040801 217 VHKCVDESGFWSHVE 231 (323)
Q Consensus 217 ~~~~m~~~g~~p~~~ 231 (323)
.+.++.+.|..|...
T Consensus 246 ~l~~ll~~g~~~~~I 260 (319)
T PLN03025 246 GLKQLYDLGYSPTDI 260 (319)
T ss_pred HHHHHHHcCCCHHHH
Confidence 777777777776533
No 419
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=21.95 E-value=5.7e+02 Score=22.78 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=26.9
Q ss_pred cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 189 ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 189 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
+|+.-|...+..++.. ..|++..|+..++.+...|-..+....+.++.
T Consensus 204 E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 204 EGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELA 251 (346)
T ss_pred hCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHh
Confidence 5666666666655543 45666666666666655554444444444444
No 420
>COG5210 GTPase-activating protein [General function prediction only]
Probab=21.65 E-value=2.5e+02 Score=26.60 Aligned_cols=45 Identities=4% Similarity=-0.043 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 040801 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 216 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 260 (323)
.+++.+.+.|+.+...++.-++..+.+.-.++.|.++++.+--.|
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 456666666666666666666666666666666666666665544
No 421
>PRK14136 recX recombination regulator RecX; Provisional
Probab=21.63 E-value=5.7e+02 Score=22.61 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=72.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
|-...|+..+..+...-.- + .+|.+.|.+.|+.++. +..+++.+.+.|+--|..--..++...
T Consensus 160 ~~~~lk~kAL~lLSrReRS-e-~ELr~KL~kkG~~ee~---------------IE~VIerLke~gYLDDeRFAesyVr~R 222 (309)
T PRK14136 160 PARSLKGRALGYLSRREYS-R-AELARKLAPYADESDS---------------VEPLLDALEREGWLSDARFAESLVHRR 222 (309)
T ss_pred cHHHHHHHHHHHhhccccc-H-HHHHHHHHHcCCCHHH---------------HHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 3344566666655443322 2 3566667666664421 557778888888777766556666543
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC-CH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK-FV 246 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~ 246 (323)
.+. ..-.+|-.++.++||.++.+- ..|..+ ....++.+..++++-.. ....+..-..-++..+.+.| ..
T Consensus 223 ~~k------kGp~rIrqELrQKGId~eLIE--qALeei-eEDE~E~A~~L~eKK~~-~~~~d~kek~K~iRfL~rRGFS~ 292 (309)
T PRK14136 223 ASR------VGSARIVSELKRHAVGDALVE--SVGAQL-RETEFERAQAVWRKKFG-ALPQTPAERAKQARFLAARGFSS 292 (309)
T ss_pred hhc------hhHHHHHHHHHHcCCCHHHHH--HHHHhc-cHhHHHHHHHHHHHHhc-ccCcCHHHHHHHHHHHHHCCCCH
Confidence 321 234567778888888644432 333322 22234444444443221 12222233344455555555 33
Q ss_pred HHHHHHHHhc
Q 040801 247 SRAWDLFVKM 256 (323)
Q Consensus 247 ~~a~~~~~~m 256 (323)
+....+++..
T Consensus 293 D~I~~vLk~~ 302 (309)
T PRK14136 293 ATIVKLLKVG 302 (309)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 422
>PRK14135 recX recombination regulator RecX; Provisional
Probab=21.44 E-value=5.1e+02 Score=21.99 Aligned_cols=111 Identities=5% Similarity=-0.014 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+..+++.+.+.|.--|...-...+..+.+.+. ..-.++-.++.+.|+.++.+ ...|..+...+.++.+..+.+.
T Consensus 91 Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~----~g~~~I~~kL~~kGi~~~~I--e~~l~~l~~~~~~d~a~~~~~k 164 (263)
T PRK14135 91 ISEVIDKLKEEKYIDDKEYAESYVRTNINTGD----KGPRVIKQKLLQKGIEDEII--EEALSEYTEEDQIEVAQKLAEK 164 (263)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc----cchHHHHHHHHHcCCCHHHH--HHHHHhCChhhHHHHHHHHHHH
Confidence 56777778888876665555556666655432 23456777788888755443 3455544344445555544443
Q ss_pred HHHh-CCccChhhHHHHHHHHHhcC-CHHHHHHHHHhcc
Q 040801 221 VDES-GFWSHVELKTTLMDAYCKCK-FVSRAWDLFVKML 257 (323)
Q Consensus 221 m~~~-g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 257 (323)
.... .-.+......-+...+.+.| ..+.+..+++++.
T Consensus 165 ~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~ 203 (263)
T PRK14135 165 LLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEELD 203 (263)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHcc
Confidence 3221 11122223344555555666 3455555666653
No 423
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.37 E-value=7.3e+02 Score=23.78 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
+.+.|...+-+|...|+..++.|...+|-.+++ +.+.=.++.++..+
T Consensus 313 ~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~Lar--nP~~Q~~L~~Ei~~ 359 (519)
T KOG0159|consen 313 SRKDAKANVMDLLAAGVDTTSNTLLWALYELAR--NPEVQQRLREEILA 359 (519)
T ss_pred CHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--ChHHHHHHHHHHHh
Confidence 556777777777777777777777777766555 44444556666654
No 424
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.28 E-value=8e+02 Score=24.21 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=47.2
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-------------CCChHHHHHHHHHHhccCChHHHH
Q 040801 149 IKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV-------------KPNAVTLVNVLTARARARDLRTVK 215 (323)
Q Consensus 149 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~~~~~~~a~ 215 (323)
.+.|+..+......++.. ..| ++..++.++++....|- .++....-.++.++.. |+...+.
T Consensus 197 ~~egi~ie~~AL~~La~~--s~G---slR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al 270 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARG---SMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVV 270 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCC---CHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHH
Confidence 455777666666666653 234 55777777765543221 1333444456666655 7888899
Q ss_pred HHHHHHHHhCCccC
Q 040801 216 RVHKCVDESGFWSH 229 (323)
Q Consensus 216 ~~~~~m~~~g~~p~ 229 (323)
.+++++.+.|..|.
T Consensus 271 ~~l~~l~~~G~~~~ 284 (618)
T PRK14951 271 ETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHcCCCHH
Confidence 99999988887764
No 425
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.98 E-value=5.4e+02 Score=22.09 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCC-cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHH---EAFLFYHEMIVQGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTL 163 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~l 163 (323)
.+...++.+|...+..+ +|.++.+.+... -|+ ...|-.-|+.+.+.++ +.+.+..|...-. -....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 45677888888888755 556666666433 233 3555556677766444 7777777766532 123445555
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHH-HH-HHH---HHHhccCC------hHHHHHHHHHHHH-hCCccChh
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT-LV-NVL---TARARARD------LRTVKRVHKCVDE-SGFWSHVE 231 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t-~~-~li---~~~~~~~~------~~~a~~~~~~m~~-~g~~p~~~ 231 (323)
++.+-...+. ....|...++.+....+.|.... .. .++ -...+.++ ++....+++...+ .+.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5555333322 44677788878777655655531 11 111 11222222 5555566665433 34444444
Q ss_pred hHHHHHH-------HHHhcCCHHHHHHHHHh
Q 040801 232 LKTTLMD-------AYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 232 ~~~~li~-------~~~~~g~~~~a~~~~~~ 255 (323)
+-.++.. ...+.+++++|.+.|+-
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4333332 35567889999888873
No 426
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=20.92 E-value=1e+02 Score=29.85 Aligned_cols=40 Identities=8% Similarity=0.048 Sum_probs=18.6
Q ss_pred hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 77 HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 77 ~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
...+++...+-.+...-.-++..|.+.|..+.|.++.+.+
T Consensus 392 ~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 392 RIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444455555666666666666665554
No 427
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=20.86 E-value=5.3e+02 Score=23.17 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccC-----------ChHHHHHHHHHHHHhCCccChhhHHH
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR-----------DLRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
|....++ +++.|+++-+. -|+..-|...|+--.+.| .+++-.++++.+.+.| ......+
T Consensus 24 w~~~~dv-Df~dAv~FH~S------LP~HKrF~~~lE~a~~~~k~l~Qpragv~lLdehielL~tl~eeG---qADlLp~ 93 (485)
T COG4865 24 WETGKDV-DFEDAVKFHQS------LPEHKRFSLALEKADKEGKTLSQPRAGVALLDEHIELLKTLQEEG---QADLLPS 93 (485)
T ss_pred hcccccc-cHHHHHHHHhc------CCchhhHHHHHHhhhhcCceecccccCcchHHHHHHHHHHHHHhc---cccccch
Confidence 3333334 56666665443 366666666665444322 2445555555555544 2334556
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.|+.|.|.+.+++|...+++-.+.
T Consensus 94 tIDSyTR~N~Ye~AavgL~~Sie~ 117 (485)
T COG4865 94 TIDSYTRLNRYEEAAVGLKKSIEA 117 (485)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhc
Confidence 678888888888888888776654
No 428
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.75 E-value=7.2e+02 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.085 Sum_probs=17.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
.+++++. .++...+..+++++.+.|..|
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 3444444 356677777777777666554
No 429
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.54 E-value=8.5e+02 Score=25.03 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHH-HcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh-C---Cc----------cChhhHHHHHHHH
Q 040801 176 PDEAIKIFYRME-IENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES-G---FW----------SHVELKTTLMDAY 240 (323)
Q Consensus 176 ~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g---~~----------p~~~~~~~li~~~ 240 (323)
.++..+++.++. .+|+..+......++..+ .|++..+..+++++... + +. .+......++++.
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL 258 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDAL 258 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 455555665553 357776766666665543 36777777777776531 1 10 1122233455555
Q ss_pred HhcCCHHHHHHHHHhccCCCCch
Q 040801 241 CKCKFVSRAWDLFVKMLFPWNNY 263 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~~~~~~~ 263 (323)
. .|+..++..+++++.+.|.++
T Consensus 259 ~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 259 A-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCH
Confidence 4 577888888888888766554
No 430
>COG0819 TenA Putative transcription activator [Transcription]
Probab=20.44 E-value=5.1e+02 Score=21.59 Aligned_cols=25 Identities=4% Similarity=-0.169 Sum_probs=15.0
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 147 QAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 147 ~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
++.+....|....|+..|...+..|
T Consensus 99 ~~~~~~~~~~~~aYt~ym~~~~~~g 123 (218)
T COG0819 99 ELLKTEPSPANKAYTRYLLDTAYSG 123 (218)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhcC
Confidence 3444445566666666666666666
No 431
>PRK07914 hypothetical protein; Reviewed
Probab=20.44 E-value=5.9e+02 Score=22.36 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=15.8
Q ss_pred HHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 187 EIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 187 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
...|+..+......|+..+. ++.....+-++.
T Consensus 142 ~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleK 173 (320)
T PRK07914 142 RSLRVKVDDDTVTALLDAVG--SDLRELASACSQ 173 (320)
T ss_pred HHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHH
Confidence 33566666666555555544 344444443333
No 432
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=6.4e+02 Score=22.73 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHc---CCCCChHHHHH--HHHHHhccCChHHHHHHHHHHHH-----hCCccChhh
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIE---NVKPNAVTLVN--VLTARARARDLRTVKRVHKCVDE-----SGFWSHVEL 232 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 232 (323)
++...-+.+ +.++|+++++++.+. --.|+.+.|.. +.+.+...||...+++.+++.++ .|+.|++.+
T Consensus 81 ~l~~~~~~~---D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 81 LLVVSEQIS---DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHhc---cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 333444444 668999999999763 34677776654 44555677999999999998877 677775543
Q ss_pred -HHHHHH-HHHhcCCHHHHH
Q 040801 233 -KTTLMD-AYCKCKFVSRAW 250 (323)
Q Consensus 233 -~~~li~-~~~~~g~~~~a~ 250 (323)
|..+-. -|-+.|++....
T Consensus 158 ~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHH
Confidence 433333 344456555443
No 433
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=20.21 E-value=5.9e+02 Score=22.29 Aligned_cols=10 Identities=0% Similarity=0.089 Sum_probs=4.8
Q ss_pred CChHHHHHHH
Q 040801 209 RDLRTVKRVH 218 (323)
Q Consensus 209 ~~~~~a~~~~ 218 (323)
|.+++|+.+.
T Consensus 172 G~~~eAeelv 181 (309)
T PF07163_consen 172 GHFSEAEELV 181 (309)
T ss_pred ccHHHHHHHH
Confidence 4555554444
No 434
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=20.13 E-value=1.9e+02 Score=25.88 Aligned_cols=129 Identities=6% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---------HHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---------EKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---------a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
+++.+.-....++-+++++-|+.=.+-...++||.=-..+..... ...+...++..|.-.=..|-|..-..
T Consensus 162 l~d~~LP~~tleQglDVL~ImrNI~~FVs~Y~YNln~Q~FvEr~S~sK~L~tI~i~hianSIRtHG~GImnTtVN~~Yqf 241 (350)
T PF14744_consen 162 LVDDHLPSQTLEQGLDVLEIMRNIHVFVSRYNYNLNNQIFVERSSNSKHLNTINIRHIANSIRTHGTGIMNTTVNFAYQF 241 (350)
T ss_pred cccccCCCcchhhhhHHHHHHhhhHHHHHhcccccccceEEEecCCCceeeEeeHHHHHHHHHhcCCchhhhHHHHHHHH
Q ss_pred HHhcCCCC-------------------------------ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHH
Q 040801 167 YSSCWCLD-------------------------------QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVK 215 (323)
Q Consensus 167 ~~~~g~~~-------------------------------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 215 (323)
+.+.=..= .++.|.++.++++..|+.+|..||--..+-+.. ++.-|.
T Consensus 242 LrkKf~~fSqFL~De~IksrL~kd~r~~~e~k~~~~~~Yp~erAekf~k~irkLG~~~dG~sylD~FR~LIt--qIGNA~ 319 (350)
T PF14744_consen 242 LRKKFQTFSQFLFDEHIKSRLLKDIRFFRENKESKDQKYPYERAEKFNKGIRKLGLSDDGQSYLDQFRQLIT--QIGNAM 319 (350)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH--HHhHHH
Q ss_pred HHHHHHHHhCC
Q 040801 216 RVHKCVDESGF 226 (323)
Q Consensus 216 ~~~~~m~~~g~ 226 (323)
...+.+...|.
T Consensus 320 gyVRmirsggl 330 (350)
T PF14744_consen 320 GYVRMIRSGGL 330 (350)
T ss_pred HHHHHHHHHhH
No 435
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=20.13 E-value=1.4e+02 Score=20.37 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=24.7
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCC
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFF 70 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~ 70 (323)
.-++..++..|..+....|++.+...++-.
T Consensus 6 s~Ll~vL~~~gs~e~~esvLD~LLs~evls 35 (87)
T cd08787 6 SELLEVLCSGGSLEPFESVLDWLLSQEVLS 35 (87)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHhHhh
Confidence 357788888999999999999998887633
Done!