Query 040801
Match_columns 323
No_of_seqs 198 out of 2462
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.5E-35 5E-40 275.8 18.7 183 90-275 26-220 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.5E-34 5.1E-39 269.0 22.6 186 38-244 27-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 6.6E-23 2.3E-27 197.7 8.5 148 90-244 127-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 5.9E-22 2E-26 191.1 7.2 130 124-256 126-262 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 1.1E-18 3.7E-23 165.5 24.2 241 34-284 197-494 (597)
6 2xpi_A Anaphase-promoting comp 99.8 9.6E-18 3.3E-22 159.0 24.1 236 35-276 303-564 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.5 3.8E-12 1.3E-16 114.1 23.9 212 39-259 103-334 (388)
8 2y4t_A DNAJ homolog subfamily 99.4 5.4E-12 1.8E-16 115.0 19.4 213 35-258 24-285 (450)
9 1w3b_A UDP-N-acetylglucosamine 99.4 3.5E-11 1.2E-15 107.7 21.2 237 37-285 67-325 (388)
10 2y4t_A DNAJ homolog subfamily 99.4 1.6E-11 5.5E-16 111.8 17.7 235 36-284 59-348 (450)
11 1fch_A Peroxisomal targeting s 99.3 1.4E-10 4.8E-15 102.6 19.9 215 37-259 64-314 (368)
12 2ho1_A Type 4 fimbrial biogene 99.3 3.4E-10 1.1E-14 94.8 21.0 198 37-259 37-238 (252)
13 4eqf_A PEX5-related protein; a 99.3 7.5E-11 2.6E-15 104.6 17.4 217 35-258 63-309 (365)
14 3cv0_A Peroxisome targeting si 99.3 5.7E-10 1.9E-14 96.7 22.1 245 36-290 20-311 (327)
15 3mkr_A Coatomer subunit epsilo 99.3 5.5E-10 1.9E-14 96.5 20.4 188 78-277 53-249 (291)
16 3hym_B Cell division cycle pro 99.3 5.3E-10 1.8E-14 97.0 20.4 242 37-287 22-292 (330)
17 2vq2_A PILW, putative fimbrial 99.3 3.6E-09 1.2E-13 86.4 23.2 198 37-258 8-210 (225)
18 2q7f_A YRRB protein; TPR, prot 99.2 6.9E-10 2.4E-14 92.1 17.0 197 37-259 23-222 (243)
19 3hym_B Cell division cycle pro 99.2 7.2E-09 2.5E-13 89.8 23.5 220 39-266 58-307 (330)
20 1b89_A Protein (clathrin heavy 99.2 6.9E-11 2.4E-15 106.3 10.0 220 38-287 33-265 (449)
21 1b89_A Protein (clathrin heavy 99.2 1.5E-11 5E-16 110.7 4.9 208 46-287 12-229 (449)
22 3mkr_A Coatomer subunit epsilo 99.2 5.3E-09 1.8E-13 90.2 20.4 190 39-259 67-264 (291)
23 2pl2_A Hypothetical conserved 99.1 1E-08 3.5E-13 84.3 20.3 190 39-256 7-211 (217)
24 2ho1_A Type 4 fimbrial biogene 99.1 8.6E-09 2.9E-13 86.1 17.7 164 90-259 37-204 (252)
25 2gw1_A Mitochondrial precursor 99.1 6.3E-09 2.2E-13 96.0 18.4 237 39-286 8-359 (514)
26 2vq2_A PILW, putative fimbrial 99.1 3.2E-08 1.1E-12 80.6 20.5 166 88-259 6-176 (225)
27 4eqf_A PEX5-related protein; a 99.0 1.9E-09 6.4E-14 95.5 13.1 193 77-276 83-295 (365)
28 2pl2_A Hypothetical conserved 99.0 1.2E-08 4.2E-13 83.8 17.0 190 88-288 3-208 (217)
29 3cv0_A Peroxisome targeting si 99.0 5.5E-09 1.9E-13 90.4 15.0 215 36-258 54-314 (327)
30 3uq3_A Heat shock protein STI1 99.0 4.4E-08 1.5E-12 81.6 19.9 204 39-259 7-236 (258)
31 3ieg_A DNAJ homolog subfamily 99.0 4.3E-08 1.5E-12 85.7 20.6 194 39-259 5-217 (359)
32 1fch_A Peroxisomal targeting s 99.0 8.4E-09 2.9E-13 91.1 15.7 213 36-255 97-355 (368)
33 3nf1_A KLC 1, kinesin light ch 99.0 1.7E-08 5.7E-13 86.7 17.1 208 36-257 26-305 (311)
34 2gw1_A Mitochondrial precursor 99.0 4.7E-08 1.6E-12 90.1 20.0 217 37-259 237-478 (514)
35 1xnf_A Lipoprotein NLPI; TPR, 99.0 2E-08 6.9E-13 84.7 16.1 165 87-259 74-244 (275)
36 3uq3_A Heat shock protein STI1 98.9 2.1E-08 7.2E-13 83.6 15.0 180 91-276 6-221 (258)
37 3ieg_A DNAJ homolog subfamily 98.9 1.7E-07 5.8E-12 81.8 21.4 236 37-285 37-326 (359)
38 1ouv_A Conserved hypothetical 98.9 6.7E-07 2.3E-11 75.7 23.5 213 38-287 7-244 (273)
39 3as5_A MAMA; tetratricopeptide 98.9 1.2E-07 4.3E-12 74.4 17.4 162 91-259 9-173 (186)
40 2q7f_A YRRB protein; TPR, prot 98.9 1.6E-08 5.6E-13 83.6 12.7 183 87-276 20-207 (243)
41 2ond_A Cleavage stimulation fa 98.9 1.1E-06 3.7E-11 76.1 23.1 166 87-259 96-270 (308)
42 3fp2_A TPR repeat-containing p 98.8 7.1E-07 2.4E-11 82.7 22.6 158 93-258 246-406 (537)
43 3vtx_A MAMA; tetratricopeptide 98.8 8E-07 2.8E-11 70.3 18.7 164 89-259 4-170 (184)
44 3fp2_A TPR repeat-containing p 98.8 5E-07 1.7E-11 83.8 20.0 214 40-259 246-491 (537)
45 1xnf_A Lipoprotein NLPI; TPR, 98.8 4.1E-07 1.4E-11 76.5 17.6 189 47-259 15-206 (275)
46 4abn_A Tetratricopeptide repea 98.7 8.9E-07 3E-11 81.6 19.9 193 39-257 104-319 (474)
47 3edt_B KLC 2, kinesin light ch 98.7 1.5E-07 5E-12 79.3 13.1 196 49-258 13-280 (283)
48 4abn_A Tetratricopeptide repea 98.7 1.3E-07 4.5E-12 87.2 12.9 217 77-303 86-330 (474)
49 3u4t_A TPR repeat-containing p 98.7 1.9E-06 6.5E-11 72.4 18.7 191 41-258 7-207 (272)
50 3nf1_A KLC 1, kinesin light ch 98.7 1.2E-07 4E-12 81.3 11.2 167 89-258 26-223 (311)
51 2ond_A Cleavage stimulation fa 98.7 1E-05 3.4E-10 69.9 23.4 197 54-277 33-256 (308)
52 1ouv_A Conserved hypothetical 98.7 5.6E-06 1.9E-10 69.9 21.1 183 89-287 5-208 (273)
53 3vtx_A MAMA; tetratricopeptide 98.6 5.8E-06 2E-10 65.3 19.1 163 37-224 5-170 (184)
54 3as5_A MAMA; tetratricopeptide 98.6 1.6E-06 5.4E-11 68.0 15.5 161 39-224 10-173 (186)
55 2fo7_A Synthetic consensus TPR 98.6 2.4E-06 8.3E-11 62.9 15.4 129 92-258 3-131 (136)
56 2fo7_A Synthetic consensus TPR 98.6 4.1E-06 1.4E-10 61.7 15.8 123 158-288 2-126 (136)
57 2h6f_A Protein farnesyltransfe 98.5 2.7E-05 9.2E-10 69.6 22.3 190 39-256 99-302 (382)
58 2ooe_A Cleavage stimulation fa 98.5 1.8E-05 6.3E-10 73.7 21.7 166 87-259 318-492 (530)
59 3u4t_A TPR repeat-containing p 98.5 7.3E-06 2.5E-10 68.8 17.3 163 91-259 4-171 (272)
60 2h6f_A Protein farnesyltransfe 98.4 2.6E-05 9E-10 69.7 19.8 202 38-266 132-356 (382)
61 4gyw_A UDP-N-acetylglucosamine 98.4 9.6E-06 3.3E-10 78.5 17.7 160 89-258 8-173 (723)
62 2ooe_A Cleavage stimulation fa 98.4 2.3E-05 8E-10 72.9 19.5 185 87-278 269-479 (530)
63 4i17_A Hypothetical protein; T 98.4 2.2E-05 7.5E-10 64.3 16.3 152 88-246 5-169 (228)
64 3edt_B KLC 2, kinesin light ch 98.3 2.3E-06 7.7E-11 71.9 9.0 156 100-258 11-197 (283)
65 4a1s_A PINS, partner of inscut 98.3 3.6E-06 1.2E-10 75.3 10.6 245 40-289 51-367 (411)
66 3mv2_B Coatomer subunit epsilo 98.2 5.7E-05 1.9E-09 65.0 16.4 141 109-257 85-238 (310)
67 4gyw_A UDP-N-acetylglucosamine 98.2 7.6E-05 2.6E-09 72.2 18.2 161 37-223 9-173 (723)
68 2xm6_A Protein corresponding t 98.2 0.00034 1.2E-08 64.3 21.6 196 50-260 56-289 (490)
69 2xm6_A Protein corresponding t 98.2 0.00018 6.2E-09 66.2 19.6 198 50-260 92-326 (490)
70 3ro2_A PINS homolog, G-protein 98.1 3.3E-05 1.1E-09 66.2 12.0 200 41-257 9-250 (338)
71 3sf4_A G-protein-signaling mod 98.1 1.7E-05 5.8E-10 70.3 10.5 95 159-256 189-293 (406)
72 3sf4_A G-protein-signaling mod 98.1 3.2E-05 1.1E-09 68.5 12.0 198 39-258 11-255 (406)
73 3u3w_A Transcriptional activat 98.1 0.00057 1.9E-08 58.3 19.4 161 94-257 79-264 (293)
74 3mv2_B Coatomer subunit epsilo 98.1 0.00014 4.9E-09 62.5 15.3 175 78-259 85-282 (310)
75 3ulq_A Response regulator aspa 98.1 9.9E-05 3.4E-09 65.5 15.0 194 46-256 112-332 (383)
76 1qqe_A Vesicular transport pro 98.1 9.7E-05 3.3E-09 63.2 14.2 193 93-289 40-264 (292)
77 3ro2_A PINS homolog, G-protein 98.0 1.6E-05 5.5E-10 68.2 9.2 204 38-257 44-290 (338)
78 4a1s_A PINS, partner of inscut 98.0 1.5E-05 5.1E-10 71.2 9.1 217 39-258 88-371 (411)
79 2r5s_A Uncharacterized protein 98.0 0.00014 4.7E-09 57.0 13.5 58 42-118 11-68 (176)
80 3qky_A Outer membrane assembly 98.0 0.00028 9.5E-09 58.9 16.2 166 87-259 12-224 (261)
81 1na0_A Designed protein CTPR3; 98.0 0.00014 4.9E-09 52.4 12.7 98 157-259 9-106 (125)
82 1qqe_A Vesicular transport pro 98.0 0.00032 1.1E-08 59.9 16.6 200 40-259 40-269 (292)
83 1xi4_A Clathrin heavy chain; a 98.0 0.00022 7.6E-09 72.3 17.3 186 43-257 1055-1248(1630)
84 2pzi_A Probable serine/threoni 98.0 0.00014 4.8E-09 70.0 15.8 152 101-259 402-563 (681)
85 2vsy_A XCC0866; transferase, g 98.0 0.00018 6.2E-09 67.5 15.4 142 77-224 7-157 (568)
86 4i17_A Hypothetical protein; T 97.9 0.0012 4.1E-08 53.6 18.3 187 38-259 8-209 (228)
87 3qou_A Protein YBBN; thioredox 97.9 0.00022 7.6E-09 60.8 13.7 169 80-256 107-281 (287)
88 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00056 1.9E-08 54.8 15.4 125 92-224 8-150 (213)
89 1hz4_A MALT regulatory protein 97.9 0.0011 3.6E-08 58.4 18.3 25 41-65 57-81 (373)
90 3q15_A PSP28, response regulat 97.9 0.00028 9.6E-09 62.5 14.6 192 47-255 111-328 (378)
91 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.0013 4.4E-08 53.6 17.6 160 91-259 5-213 (225)
92 3ulq_A Response regulator aspa 97.9 0.00021 7.2E-09 63.4 13.4 164 92-258 105-292 (383)
93 1xi4_A Clathrin heavy chain; a 97.9 0.00069 2.4E-08 68.8 17.9 213 49-285 1088-1336(1630)
94 3qky_A Outer membrane assembly 97.8 0.0009 3.1E-08 55.8 16.2 168 38-230 16-228 (261)
95 2pzi_A Probable serine/threoni 97.8 0.00029 1E-08 67.8 14.8 190 48-258 402-604 (681)
96 4g1t_A Interferon-induced prot 97.8 0.0028 9.6E-08 57.4 20.6 208 37-259 51-276 (472)
97 3e4b_A ALGK; tetratricopeptide 97.8 0.0029 9.9E-08 57.6 20.5 210 43-260 9-281 (452)
98 2r5s_A Uncharacterized protein 97.8 0.00017 5.8E-09 56.5 10.6 158 92-257 8-171 (176)
99 2qfc_A PLCR protein; TPR, HTH, 97.8 0.0015 5.1E-08 55.6 17.3 164 91-257 76-264 (293)
100 3rjv_A Putative SEL1 repeat pr 97.8 0.0013 4.5E-08 53.2 16.1 165 88-261 16-199 (212)
101 2vsy_A XCC0866; transferase, g 97.8 0.00062 2.1E-08 63.8 16.0 147 104-258 3-156 (568)
102 1hz4_A MALT regulatory protein 97.8 0.0029 9.8E-08 55.5 19.5 193 46-259 23-244 (373)
103 4g1t_A Interferon-induced prot 97.8 0.0016 5.5E-08 59.0 18.1 215 37-259 94-363 (472)
104 1elw_A TPR1-domain of HOP; HOP 97.8 0.0012 4.2E-08 46.8 14.0 99 156-259 3-101 (118)
105 3qou_A Protein YBBN; thioredox 97.8 0.00084 2.9E-08 57.2 15.0 156 42-223 122-283 (287)
106 2lni_A Stress-induced-phosphop 97.7 0.00097 3.3E-08 48.6 13.1 100 155-259 14-113 (133)
107 2vyi_A SGTA protein; chaperone 97.7 0.00081 2.8E-08 48.7 12.5 99 156-259 11-109 (131)
108 3gw4_A Uncharacterized protein 97.7 0.00036 1.2E-08 55.3 11.4 154 101-258 3-175 (203)
109 3gyz_A Chaperone protein IPGC; 97.7 0.00099 3.4E-08 51.0 12.8 98 157-259 36-133 (151)
110 1a17_A Serine/threonine protei 97.7 0.00043 1.5E-08 52.9 10.8 97 158-259 14-110 (166)
111 3urz_A Uncharacterized protein 97.7 0.0017 5.8E-08 52.3 14.8 24 96-119 10-33 (208)
112 1na0_A Designed protein CTPR3; 97.7 0.0018 6.1E-08 46.3 13.7 114 90-241 9-122 (125)
113 2ifu_A Gamma-SNAP; membrane fu 97.7 0.00062 2.1E-08 58.5 12.9 162 92-257 38-222 (307)
114 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.0025 8.5E-08 51.0 15.8 118 134-259 15-150 (213)
115 4gco_A Protein STI-1; structur 97.7 0.00091 3.1E-08 49.3 12.0 102 153-259 8-110 (126)
116 2kck_A TPR repeat; tetratricop 97.7 0.00053 1.8E-08 48.3 10.4 99 156-259 5-106 (112)
117 4e6h_A MRNA 3'-END-processing 97.7 0.0011 3.7E-08 63.6 15.2 178 77-259 361-570 (679)
118 3q15_A PSP28, response regulat 97.6 0.00068 2.3E-08 59.9 13.1 163 93-258 104-289 (378)
119 2vgx_A Chaperone SYCD; alterna 97.6 0.0015 5.3E-08 49.5 12.9 99 156-259 20-118 (148)
120 1elr_A TPR2A-domain of HOP; HO 97.6 0.0011 3.7E-08 48.1 11.6 99 157-259 4-108 (131)
121 3q49_B STIP1 homology and U bo 97.6 0.0022 7.4E-08 47.2 13.4 100 155-259 7-106 (137)
122 3upv_A Heat shock protein STI1 97.6 0.0021 7.2E-08 46.8 12.8 98 157-259 4-101 (126)
123 2xcb_A PCRH, regulatory protei 97.6 0.002 6.8E-08 48.3 12.9 98 157-259 18-115 (142)
124 1a17_A Serine/threonine protei 97.5 0.003 1E-07 48.0 14.0 129 91-257 14-144 (166)
125 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0029 9.9E-08 54.3 15.1 190 40-252 39-254 (307)
126 2e2e_A Formate-dependent nitri 97.5 0.0022 7.7E-08 49.7 13.0 113 141-259 29-144 (177)
127 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0022 7.6E-08 49.2 12.8 99 156-259 10-108 (164)
128 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.022 7.4E-07 46.2 18.9 161 40-225 7-214 (225)
129 3urz_A Uncharacterized protein 97.4 0.0018 6.2E-08 52.1 11.8 68 45-118 12-82 (208)
130 2lni_A Stress-induced-phosphop 97.4 0.0047 1.6E-07 44.8 13.0 120 87-244 13-132 (133)
131 4e6h_A MRNA 3'-END-processing 97.4 0.0039 1.3E-07 59.7 15.5 202 87-294 340-574 (679)
132 2vyi_A SGTA protein; chaperone 97.4 0.0037 1.2E-07 45.1 12.3 120 89-246 11-130 (131)
133 2dba_A Smooth muscle cell asso 97.4 0.0043 1.5E-07 46.0 12.9 98 156-259 27-128 (148)
134 4ga2_A E3 SUMO-protein ligase 97.4 0.001 3.5E-08 50.6 9.3 102 159-266 33-137 (150)
135 3e4b_A ALGK; tetratricopeptide 97.3 0.059 2E-06 48.9 21.3 226 52-287 89-344 (452)
136 3rjv_A Putative SEL1 repeat pr 97.3 0.011 3.8E-07 47.6 14.6 172 108-288 4-191 (212)
137 2e2e_A Formate-dependent nitri 97.2 0.0027 9.1E-08 49.3 10.4 117 102-224 22-144 (177)
138 1p5q_A FKBP52, FK506-binding p 97.2 0.0074 2.5E-07 52.6 14.1 146 89-258 146-293 (336)
139 1hxi_A PEX5, peroxisome target 97.2 0.0041 1.4E-07 45.3 10.5 95 160-259 20-114 (121)
140 4gcn_A Protein STI-1; structur 97.2 0.0069 2.4E-07 44.5 11.7 99 157-259 8-112 (127)
141 2kck_A TPR repeat; tetratricop 97.2 0.012 4.2E-07 40.9 12.8 99 89-224 5-106 (112)
142 1p5q_A FKBP52, FK506-binding p 97.2 0.0045 1.6E-07 53.9 12.1 100 156-259 146-259 (336)
143 3u3w_A Transcriptional activat 97.1 0.01 3.5E-07 50.3 13.9 160 44-223 82-265 (293)
144 4ga2_A E3 SUMO-protein ligase 97.1 0.0065 2.2E-07 46.0 10.8 134 102-244 9-148 (150)
145 4b4t_Q 26S proteasome regulato 97.1 0.044 1.5E-06 48.8 18.0 203 45-257 12-243 (434)
146 3gw4_A Uncharacterized protein 97.1 0.0037 1.3E-07 49.3 9.7 135 87-224 23-176 (203)
147 3k9i_A BH0479 protein; putativ 97.0 0.00084 2.9E-08 48.5 5.2 97 175-272 5-104 (117)
148 2xev_A YBGF; tetratricopeptide 97.0 0.019 6.6E-07 41.4 12.7 90 163-259 8-105 (129)
149 3dra_A Protein farnesyltransfe 96.9 0.11 3.8E-06 44.5 18.4 224 41-269 36-299 (306)
150 1elr_A TPR2A-domain of HOP; HO 96.9 0.0083 2.8E-07 43.2 9.5 110 91-238 5-120 (131)
151 1elw_A TPR1-domain of HOP; HOP 96.9 0.042 1.4E-06 38.4 13.2 98 90-224 4-101 (118)
152 2qfc_A PLCR protein; TPR, HTH, 96.8 0.083 2.9E-06 44.5 16.6 128 93-223 118-265 (293)
153 2c2l_A CHIP, carboxy terminus 96.8 0.011 3.7E-07 50.0 10.7 187 39-259 6-199 (281)
154 4f3v_A ESX-1 secretion system 96.7 0.023 7.9E-07 48.0 12.4 113 141-259 121-237 (282)
155 3sz7_A HSC70 cochaperone (SGT) 96.7 0.064 2.2E-06 40.7 14.2 99 89-224 10-108 (164)
156 2c2l_A CHIP, carboxy terminus 96.7 0.023 8E-07 47.9 12.6 92 128-224 7-101 (281)
157 3ro3_A PINS homolog, G-protein 96.7 0.01 3.5E-07 44.3 9.3 137 91-257 10-156 (164)
158 3ro3_A PINS homolog, G-protein 96.7 0.011 3.8E-07 44.1 9.4 129 157-288 9-152 (164)
159 2dba_A Smooth muscle cell asso 96.7 0.07 2.4E-06 39.2 13.8 104 87-224 25-128 (148)
160 4gco_A Protein STI-1; structur 96.6 0.048 1.6E-06 39.8 12.2 96 92-224 15-110 (126)
161 4b4t_Q 26S proteasome regulato 96.6 0.085 2.9E-06 46.9 16.2 184 98-284 12-235 (434)
162 2fbn_A 70 kDa peptidylprolyl i 96.6 0.051 1.7E-06 42.8 13.1 98 158-259 39-151 (198)
163 3rkv_A Putative peptidylprolyl 96.6 0.029 9.8E-07 42.7 11.2 99 157-259 11-126 (162)
164 2fbn_A 70 kDa peptidylprolyl i 96.6 0.037 1.3E-06 43.6 12.1 148 90-259 38-186 (198)
165 2kat_A Uncharacterized protein 96.6 0.016 5.5E-07 41.2 9.0 79 178-258 3-81 (115)
166 2l6j_A TPR repeat-containing p 96.5 0.0032 1.1E-07 44.3 5.0 62 158-223 5-66 (111)
167 1wao_1 Serine/threonine protei 96.5 0.0048 1.6E-07 56.6 6.8 117 135-257 16-137 (477)
168 2uy1_A Cleavage stimulation fa 96.5 0.26 9E-06 45.2 18.5 176 87-278 210-400 (493)
169 1kt0_A FKBP51, 51 kDa FK506-bi 96.4 0.03 1E-06 50.9 11.6 99 157-259 268-380 (457)
170 1wao_1 Serine/threonine protei 96.3 0.021 7.1E-07 52.4 10.4 116 98-220 14-135 (477)
171 3q49_B STIP1 homology and U bo 96.3 0.071 2.4E-06 38.7 11.7 101 87-224 6-106 (137)
172 3gyz_A Chaperone protein IPGC; 96.3 0.043 1.5E-06 41.7 10.5 66 156-225 69-134 (151)
173 3upv_A Heat shock protein STI1 96.3 0.078 2.7E-06 38.1 11.7 97 91-224 5-101 (126)
174 3n71_A Histone lysine methyltr 96.2 0.017 5.7E-07 53.1 9.0 100 157-259 351-464 (490)
175 2xcb_A PCRH, regulatory protei 96.2 0.072 2.5E-06 39.4 11.0 97 91-224 19-115 (142)
176 2vgx_A Chaperone SYCD; alterna 96.2 0.058 2E-06 40.6 10.5 99 89-224 20-118 (148)
177 2if4_A ATFKBP42; FKBP-like, al 96.1 0.039 1.3E-06 48.0 10.6 96 158-259 180-293 (338)
178 1na3_A Designed protein CTPR2; 96.1 0.1 3.5E-06 34.7 10.7 63 158-224 10-72 (91)
179 1kt0_A FKBP51, 51 kDa FK506-bi 96.1 0.073 2.5E-06 48.3 12.6 147 89-259 267-415 (457)
180 3k9i_A BH0479 protein; putativ 96.1 0.033 1.1E-06 39.8 8.4 80 141-224 9-90 (117)
181 2l6j_A TPR repeat-containing p 96.1 0.017 5.7E-07 40.4 6.6 66 193-259 2-67 (111)
182 3n71_A Histone lysine methyltr 96.0 0.02 7E-07 52.6 8.5 134 47-224 319-464 (490)
183 4f3v_A ESX-1 secretion system 96.0 0.088 3E-06 44.5 11.5 134 93-236 105-247 (282)
184 2hr2_A Hypothetical protein; a 95.8 0.2 6.7E-06 38.4 11.8 97 157-258 11-130 (159)
185 3ma5_A Tetratricopeptide repea 95.7 0.068 2.3E-06 37.0 8.5 62 195-257 7-68 (100)
186 1klx_A Cysteine rich protein B 95.6 0.24 8.2E-06 36.6 11.8 80 175-260 40-127 (138)
187 2kat_A Uncharacterized protein 95.6 0.18 6.2E-06 35.5 10.6 79 141-224 4-82 (115)
188 2xev_A YBGF; tetratricopeptide 95.5 0.41 1.4E-05 34.0 13.3 94 96-224 8-105 (129)
189 1ihg_A Cyclophilin 40; ppiase 95.4 0.12 4E-06 45.6 10.7 98 158-259 224-336 (370)
190 3ma5_A Tetratricopeptide repea 95.3 0.14 4.7E-06 35.4 9.0 65 156-224 6-70 (100)
191 1hxi_A PEX5, peroxisome target 95.1 0.23 8E-06 35.6 9.8 63 157-223 51-113 (121)
192 2if4_A ATFKBP42; FKBP-like, al 95.0 0.15 5E-06 44.3 10.0 148 90-259 179-328 (338)
193 1ihg_A Cyclophilin 40; ppiase 94.9 0.21 7E-06 44.0 10.9 137 92-251 225-362 (370)
194 4gcn_A Protein STI-1; structur 94.8 0.44 1.5E-05 34.4 10.9 104 92-233 10-119 (127)
195 3qww_A SET and MYND domain-con 94.8 0.27 9.4E-06 44.3 11.5 91 168-258 306-410 (433)
196 1klx_A Cysteine rich protein B 94.7 0.42 1.5E-05 35.2 10.7 113 103-226 8-128 (138)
197 1na3_A Designed protein CTPR2; 94.7 0.19 6.6E-06 33.2 8.0 65 194-259 8-72 (91)
198 3ly7_A Transcriptional activat 94.5 1.5 5.2E-05 38.3 14.8 134 121-259 190-339 (372)
199 2uy1_A Cleavage stimulation fa 94.0 0.8 2.7E-05 41.9 12.9 76 176-257 336-411 (493)
200 3qwp_A SET and MYND domain-con 94.0 0.36 1.2E-05 43.5 10.3 92 164-258 294-399 (429)
201 2kc7_A BFR218_protein; tetratr 93.6 0.47 1.6E-05 32.0 8.3 56 165-224 8-64 (99)
202 3dra_A Protein farnesyltransfe 93.4 3.3 0.00011 35.2 21.1 196 52-258 31-249 (306)
203 3bee_A Putative YFRE protein; 92.3 1.2 4.3E-05 30.3 8.9 65 193-259 4-72 (93)
204 3ly7_A Transcriptional activat 92.2 5.5 0.00019 34.8 14.8 139 87-234 191-347 (372)
205 1zu2_A Mitochondrial import re 92.1 0.38 1.3E-05 36.7 6.5 93 175-272 17-131 (158)
206 3q7a_A Farnesyltransferase alp 92.1 5.5 0.00019 34.5 21.9 218 47-269 64-343 (349)
207 3mkq_A Coatomer beta'-subunit; 92.0 1.7 5.7E-05 42.0 12.6 86 155-258 679-764 (814)
208 1pc2_A Mitochondria fission pr 92.0 1.6 5.5E-05 32.9 9.7 81 177-259 15-100 (152)
209 3rkv_A Putative peptidylprolyl 91.7 3.1 0.00011 30.9 16.7 109 91-224 12-126 (162)
210 1wy6_A Hypothetical protein ST 91.6 3.2 0.00011 30.8 12.3 141 100-262 17-157 (172)
211 3qww_A SET and MYND domain-con 91.1 0.76 2.6E-05 41.4 8.4 69 91-188 341-410 (433)
212 1dce_A Protein (RAB geranylger 90.8 10 0.00035 35.2 16.6 130 141-274 92-237 (567)
213 2kc7_A BFR218_protein; tetratr 90.7 0.98 3.3E-05 30.3 7.1 58 201-259 6-64 (99)
214 2v5f_A Prolyl 4-hydroxylase su 89.2 2.4 8.3E-05 29.2 8.2 65 194-258 4-74 (104)
215 1pc2_A Mitochondria fission pr 88.0 6.2 0.00021 29.7 10.0 85 141-229 17-103 (152)
216 3qwp_A SET and MYND domain-con 87.5 2 6.7E-05 38.6 8.3 89 96-187 293-398 (429)
217 4gns_B Protein CSD3, chitin bi 85.2 8.3 0.00028 37.2 11.6 114 141-257 268-398 (754)
218 2ff4_A Probable regulatory pro 84.6 6.2 0.00021 34.7 9.9 130 89-236 111-251 (388)
219 2ff4_A Probable regulatory pro 84.5 2.7 9.1E-05 37.1 7.5 68 198-266 174-246 (388)
220 2hr2_A Hypothetical protein; a 84.3 11 0.00039 28.4 10.7 108 93-224 14-131 (159)
221 1wdy_A 2-5A-dependent ribonucl 82.7 11 0.00038 30.5 10.4 143 99-255 78-241 (285)
222 1zu2_A Mitochondrial import re 81.6 14 0.00047 27.9 9.4 59 176-238 62-132 (158)
223 3dss_A Geranylgeranyl transfer 80.8 26 0.00089 30.0 17.8 170 101-276 40-240 (331)
224 2v5f_A Prolyl 4-hydroxylase su 80.6 11 0.00038 25.6 8.9 70 156-230 4-79 (104)
225 3q7a_A Farnesyltransferase alp 80.2 28 0.00096 30.0 16.9 96 177-274 142-253 (349)
226 3u64_A Protein TP_0956; tetrat 79.7 26 0.00091 29.4 12.3 93 141-238 182-285 (301)
227 3u64_A Protein TP_0956; tetrat 79.6 15 0.0005 31.0 9.7 104 157-262 154-272 (301)
228 1k1a_A B-cell lymphoma 3-encod 79.6 15 0.00051 28.9 9.9 150 96-255 12-172 (241)
229 1nzn_A CGI-135 protein, fissio 79.5 15 0.00052 26.5 8.8 82 177-259 18-103 (126)
230 1wdy_A 2-5A-dependent ribonucl 78.7 14 0.00049 29.8 9.7 144 95-255 7-170 (285)
231 1v54_E Cytochrome C oxidase po 78.2 13 0.00044 25.8 7.3 46 178-223 28-73 (109)
232 3dss_A Geranylgeranyl transfer 77.8 32 0.0011 29.4 17.4 156 106-268 90-275 (331)
233 3mkq_A Coatomer beta'-subunit; 77.5 6.6 0.00023 37.7 8.2 106 166-289 661-773 (814)
234 1v54_E Cytochrome C oxidase po 77.2 16 0.00054 25.4 9.9 47 212-258 27-73 (109)
235 1us7_B HSP90 CO-chaperone CDC3 76.4 28 0.00095 28.6 10.2 47 267-313 187-234 (265)
236 3bee_A Putative YFRE protein; 73.9 17 0.00059 24.3 10.6 70 155-225 4-73 (93)
237 3eiq_C Programmed cell death p 73.7 20 0.00067 31.2 9.2 26 93-118 57-82 (358)
238 2y69_E Cytochrome C oxidase su 72.5 26 0.00089 25.7 9.9 59 179-238 72-130 (152)
239 1nzn_A CGI-135 protein, fissio 72.0 12 0.00042 27.0 6.4 81 142-224 21-103 (126)
240 4gns_B Protein CSD3, chitin bi 71.7 70 0.0024 30.8 13.3 122 95-221 253-397 (754)
241 1dce_A Protein (RAB geranylger 70.3 68 0.0023 29.6 16.6 94 176-271 89-186 (567)
242 3mkq_B Coatomer subunit alpha; 70.0 35 0.0012 26.2 11.6 41 175-221 20-60 (177)
243 2y69_E Cytochrome C oxidase su 69.1 25 0.00086 25.8 7.3 50 210-259 68-117 (152)
244 1k1a_A B-cell lymphoma 3-encod 68.3 38 0.0013 26.5 9.6 181 41-254 10-204 (241)
245 1y8m_A FIS1; mitochondria, unk 66.2 35 0.0012 25.2 7.8 68 192-259 36-106 (144)
246 2zu6_B Programmed cell death p 65.9 22 0.00074 30.2 7.7 56 93-150 6-66 (307)
247 3aji_A 26S proteasome non-ATPa 65.4 27 0.00091 27.3 8.0 146 96-254 9-160 (231)
248 4h7y_A Dual specificity protei 65.0 42 0.0014 25.2 9.7 103 157-264 13-128 (161)
249 1wy6_A Hypothetical protein ST 64.7 40 0.0014 25.0 13.0 119 90-227 39-157 (172)
250 4b4t_P 26S proteasome regulato 62.6 58 0.002 29.0 10.4 165 89-258 55-246 (445)
251 3esl_A Checkpoint serine/threo 62.2 51 0.0017 25.9 8.6 58 208-265 92-150 (202)
252 3o48_A Mitochondria fission 1 61.9 25 0.00084 25.7 6.3 70 190-259 35-107 (134)
253 1ug3_A EIF4GI, eukaryotic prot 59.0 28 0.00095 29.9 7.3 60 93-153 14-77 (339)
254 3jxi_A Vanilloid receptor-rela 58.9 23 0.00078 28.4 6.6 195 43-257 8-249 (260)
255 2d2s_A Exocyst complex compone 58.6 54 0.0019 26.4 8.6 90 162-257 23-118 (235)
256 3eu9_A Huntingtin-interacting 58.1 62 0.0021 25.0 9.3 54 201-258 180-235 (240)
257 1bd8_A P19INK4D CDK4/6 inhibit 56.6 25 0.00084 25.5 5.9 144 96-255 5-155 (156)
258 2fu4_A Ferric uptake regulatio 56.4 37 0.0013 21.8 6.5 61 185-246 7-68 (83)
259 4b4t_R RPN7, 26S proteasome re 54.6 87 0.003 27.7 10.1 96 157-257 131-235 (429)
260 2xig_A Ferric uptake regulatio 53.2 50 0.0017 24.4 7.0 64 184-248 16-79 (150)
261 1fsh_A Dishevelled-1; three-he 53.1 41 0.0014 23.3 6.1 37 155-191 48-85 (105)
262 2fe3_A Peroxide operon regulat 52.7 48 0.0016 24.3 6.8 64 184-248 11-74 (145)
263 2keb_A DNA polymerase subunit 51.6 55 0.0019 22.4 6.5 56 141-201 28-88 (101)
264 1mzb_A Ferric uptake regulatio 51.5 43 0.0015 24.2 6.3 63 185-248 8-71 (136)
265 2d2s_A Exocyst complex compone 51.4 94 0.0032 25.0 9.7 87 95-187 23-118 (235)
266 2w57_A Ferric uptake regulatio 50.4 51 0.0017 24.3 6.7 64 184-248 6-70 (150)
267 3ljn_A Hypothetical protein; a 50.2 1.1E+02 0.0039 25.6 12.3 156 87-257 15-197 (364)
268 2nsz_A Programmed cell death p 49.3 38 0.0013 24.4 5.6 26 92-117 9-34 (129)
269 4ets_A Ferric uptake regulatio 49.1 74 0.0025 23.8 7.5 71 177-248 14-87 (162)
270 3aji_A 26S proteasome non-ATPa 48.6 66 0.0023 24.8 7.7 177 43-255 9-194 (231)
271 3kea_A K1L; tropism, ANK repea 48.1 35 0.0012 28.0 6.1 151 88-255 27-183 (285)
272 3esl_A Checkpoint serine/threo 46.0 70 0.0024 25.1 7.0 54 176-229 95-149 (202)
273 3t8k_A Uncharacterized protein 46.0 32 0.0011 26.3 5.1 149 99-253 12-174 (186)
274 2rfa_A Transient receptor pote 45.8 1E+02 0.0035 23.8 8.7 150 97-256 41-220 (232)
275 4fhn_B Nucleoporin NUP120; pro 45.7 1.7E+02 0.0058 29.6 11.6 110 98-213 850-989 (1139)
276 2ion_A PDCD4, programmed cell 44.9 46 0.0016 24.8 5.6 26 92-117 11-36 (152)
277 1v3f_A Pleckstrin 2; three-hel 44.0 33 0.0011 24.5 4.4 37 155-191 35-71 (120)
278 4g8k_A 2-5A-dependent ribonucl 43.8 96 0.0033 25.8 8.4 99 141-253 218-321 (337)
279 4a1g_A Mitotic checkpoint seri 43.5 99 0.0034 23.0 7.7 46 214-259 84-130 (152)
280 3o48_A Mitochondria fission 1 43.0 94 0.0032 22.6 9.3 76 152-229 35-110 (134)
281 2dzn_A Probable 26S proteasome 42.5 95 0.0033 23.8 7.7 146 97-255 6-162 (228)
282 4h7y_A Dual specificity protei 42.3 1.1E+02 0.0036 23.0 10.1 120 87-238 10-136 (161)
283 3t8k_A Uncharacterized protein 42.1 37 0.0013 25.9 5.0 131 96-228 41-184 (186)
284 4a1g_A Mitotic checkpoint seri 41.9 57 0.002 24.3 5.6 53 177-229 82-135 (152)
285 3kea_A K1L; tropism, ANK repea 41.3 50 0.0017 27.0 6.0 151 95-266 64-224 (285)
286 3eyy_A Putative iron uptake re 41.2 50 0.0017 24.2 5.3 62 185-248 9-70 (145)
287 2wvi_A Mitotic checkpoint seri 41.0 64 0.0022 24.4 5.9 50 179-228 79-129 (164)
288 3d9h_A CDNA FLJ77766, highly s 40.2 1.5E+02 0.005 24.0 9.2 27 36-62 11-37 (285)
289 3ltm_A Alpha-REP4; protein eng 40.1 1.2E+02 0.0041 23.0 12.8 91 155-257 93-183 (211)
290 2f8y_A Notch homolog 1, transl 39.5 87 0.003 23.9 7.0 142 96-255 28-180 (223)
291 2qq8_A TBC1 domain family memb 39.2 68 0.0023 27.3 6.6 79 181-259 214-295 (334)
292 2etb_A Transient receptor pote 39.1 5.7 0.00019 32.1 -0.3 140 96-247 5-188 (256)
293 2etb_A Transient receptor pote 38.8 1E+02 0.0036 24.2 7.5 194 43-256 5-244 (256)
294 2pnn_A Transient receptor pote 38.5 84 0.0029 25.2 6.9 195 42-257 15-257 (273)
295 3hra_A Ankyrin repeat family p 37.7 1E+02 0.0035 23.0 7.0 36 215-250 158-195 (201)
296 2ko4_A Mediator of RNA polymer 37.1 47 0.0016 21.6 3.8 38 79-116 23-62 (81)
297 3ljn_A Hypothetical protein; a 36.6 1.2E+02 0.0041 25.5 7.9 198 41-255 21-266 (364)
298 2uwj_G Type III export protein 36.5 1E+02 0.0036 21.2 6.5 87 176-271 22-108 (115)
299 3qye_A TBC1 domain family memb 36.4 1.4E+02 0.0047 25.2 8.2 78 181-258 209-290 (331)
300 2wvi_A Mitotic checkpoint seri 36.1 86 0.003 23.7 5.9 54 213-266 78-132 (164)
301 2ijq_A Hypothetical protein; s 35.9 1.2E+02 0.0042 22.7 6.7 60 198-258 36-103 (161)
302 4b93_B Ankyrin repeat domain-c 35.6 72 0.0025 25.9 6.0 66 185-254 137-206 (269)
303 2p58_C Putative type III secre 35.4 1.1E+02 0.0038 21.2 7.1 89 175-272 22-110 (116)
304 2uwj_G Type III export protein 35.0 1.1E+02 0.0038 21.1 7.8 74 141-225 25-98 (115)
305 2p58_C Putative type III secre 34.3 1.2E+02 0.0039 21.1 9.2 18 240-257 50-67 (116)
306 2rg8_A Programmed cell death p 33.7 25 0.00086 26.6 2.6 26 93-118 13-38 (165)
307 3mkq_B Coatomer subunit alpha; 33.2 1.6E+02 0.0055 22.5 12.1 83 157-257 34-116 (177)
308 3bge_A Predicted ATPase; struc 33.1 1.7E+02 0.006 22.8 7.7 53 101-153 18-78 (201)
309 4aez_C MAD3, mitotic spindle c 33.0 94 0.0032 24.8 5.9 51 178-228 132-183 (223)
310 3ygs_P Procaspase 9; apoptosis 32.7 48 0.0016 22.4 3.7 52 59-110 26-88 (97)
311 2b7e_A PRE-mRNA processing pro 32.7 40 0.0014 20.7 2.8 32 107-138 3-35 (59)
312 1wty_A Hypothetical protein TT 32.5 1.3E+02 0.0044 21.1 6.8 59 155-221 19-78 (119)
313 2ysr_A DEP domain-containing p 30.8 1.2E+02 0.004 20.9 5.5 37 155-191 38-81 (105)
314 2nsz_A Programmed cell death p 30.6 1.5E+02 0.005 21.2 6.9 64 160-227 10-75 (129)
315 3l6a_A Eukaryotic translation 30.4 2.6E+02 0.009 24.0 12.5 60 92-155 14-81 (364)
316 2qfz_A TBC1 domain family memb 30.2 1.1E+02 0.0036 26.1 6.4 44 217-260 231-274 (345)
317 2r9g_A AAA ATPase, central reg 30.2 2E+02 0.0068 22.5 9.5 51 102-153 26-84 (204)
318 3r88_A Anthranilate phosphorib 29.7 2E+02 0.0067 25.0 8.0 68 156-225 22-89 (377)
319 2ion_A PDCD4, programmed cell 29.3 1.3E+02 0.0043 22.3 5.8 67 159-229 11-79 (152)
320 1uhw_A Pleckstrin; three-helix 29.2 37 0.0013 23.7 2.6 51 141-191 8-71 (109)
321 3mwm_A ZUR, putative metal upt 28.5 73 0.0025 23.1 4.4 62 186-248 5-66 (139)
322 2yru_A Steroid receptor RNA ac 27.0 1.1E+02 0.0036 21.7 4.7 40 184-223 50-89 (118)
323 1y8m_A FIS1; mitochondria, unk 26.9 1.9E+02 0.0065 21.3 12.3 76 152-229 34-109 (144)
324 2o03_A Probable zinc uptake re 26.7 80 0.0027 22.5 4.3 49 200-248 15-63 (131)
325 3twr_A Tankyrase-2; ankyrin re 26.0 91 0.0031 22.5 4.7 15 99-113 14-28 (165)
326 3hra_A Ankyrin repeat family p 25.9 94 0.0032 23.2 4.9 73 97-171 9-83 (201)
327 3dfg_A Xcrecx, regulatory prot 25.6 2.1E+02 0.0071 21.3 9.9 128 91-245 18-147 (162)
328 1wgl_A TOLL-interacting protei 25.1 1.1E+02 0.0037 18.6 3.9 47 176-229 9-57 (59)
329 3pvs_A Replication-associated 25.0 3.2E+02 0.011 24.2 8.7 26 241-266 266-291 (447)
330 3ctd_A Putative ATPase, AAA fa 24.8 2.6E+02 0.0088 22.1 9.1 59 96-154 38-107 (213)
331 3v30_A DNA-binding protein rfx 24.8 1E+02 0.0035 22.4 4.8 147 97-256 6-158 (172)
332 3hzj_A Rabgap1L, RAB GTPase-ac 24.7 1.9E+02 0.0065 24.0 6.9 73 181-254 175-251 (310)
333 2fu4_A Ferric uptake regulatio 24.2 1.4E+02 0.0048 18.9 7.2 55 116-171 8-66 (83)
334 3ltj_A Alpharep-4; protein eng 24.1 2.3E+02 0.0077 21.2 12.6 91 155-257 88-178 (201)
335 3c1d_A Protein ORAA, regulator 23.8 2.2E+02 0.0076 21.0 10.9 49 141-194 49-97 (159)
336 1zbp_A Hypothetical protein VP 23.3 3.1E+02 0.011 22.5 7.8 90 155-257 29-127 (273)
337 3ygs_P Procaspase 9; apoptosis 23.2 1.2E+02 0.0041 20.4 4.4 37 209-249 51-87 (97)
338 3v31_A Ankyrin repeat family A 23.2 2.1E+02 0.0071 20.5 7.4 143 97-256 7-158 (167)
339 3jxi_A Vanilloid receptor-rela 23.2 84 0.0029 24.9 4.3 40 96-135 8-54 (260)
340 2cso_A Pleckstrin; DEP domain, 22.9 56 0.0019 23.5 2.7 51 141-191 18-81 (127)
341 4aez_C MAD3, mitotic spindle c 22.7 2.9E+02 0.01 21.9 7.4 52 140-194 132-184 (223)
342 1zbp_A Hypothetical protein VP 22.6 2.4E+02 0.0083 23.2 6.7 70 165-238 5-76 (273)
343 4fke_A Aminopeptidase N; zinc 22.1 5.7E+02 0.019 25.1 12.8 115 130-254 691-817 (909)
344 1lsh_A Lipovitellin (LV-1N, LV 21.9 6.1E+02 0.021 25.4 12.8 154 91-257 311-480 (1056)
345 2zu6_B Programmed cell death p 21.8 1.4E+02 0.0049 25.0 5.4 25 93-117 169-193 (307)
346 3eiq_C Programmed cell death p 21.7 1.5E+02 0.0051 25.6 5.6 25 93-117 220-244 (358)
347 3e3v_A Regulatory protein RECX 21.5 2.7E+02 0.0091 21.0 10.7 112 141-258 52-165 (177)
348 2fe3_A Peroxide operon regulat 21.5 2.3E+02 0.008 20.4 7.5 64 144-211 9-72 (145)
349 1jog_A Hypothetical protein HI 21.4 2.4E+02 0.0083 20.5 6.6 94 157-258 40-141 (146)
350 2p1h_A APAF-1, apoptotic prote 21.3 1.8E+02 0.0062 19.1 6.8 61 181-249 26-86 (94)
351 1oai_A Nuclear RNA export fact 20.6 1.2E+02 0.0042 18.3 3.5 22 173-195 34-56 (59)
352 2wpv_A GET4, UPF0363 protein Y 20.5 3.8E+02 0.013 22.5 16.8 151 92-257 35-215 (312)
353 4b4t_R RPN7, 26S proteasome re 20.4 4.3E+02 0.015 23.1 10.2 210 92-308 133-376 (429)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-35 Score=275.84 Aligned_cols=183 Identities=12% Similarity=0.061 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh------------HHHHHHHHHHcCCCCch
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV------------EKQLHSQAIKFGLASDS 157 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~------------a~~~~~~m~~~g~~~~~ 157 (323)
...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. |.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346899999999999999999999999999999999999999999987542 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
+|||+||++|++.| ++++|.++|++|...|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++||
T Consensus 106 ~tyn~lI~~~~~~g---~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 106 ATFTNGARLAVAKD---DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999 669999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccC
Q 040801 238 DAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 275 (323)
++|++.|++++|.++|++|++.+..|+..|+......+
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999999999988888887766655443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-34 Score=269.02 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=179.0
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCC---------hHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNL---------HHE 108 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~---------~~~ 108 (323)
..++.+|.+|++.|++++|.++|++|.+.|+ .||..+||+||.+|++.+. +++
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv------------------~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGV------------------QLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC------------------CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------------CCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3578899999999999999999999999999 9999999999999998765 689
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 040801 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185 (323)
Q Consensus 109 A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~ 185 (323)
|+++|++|.+.|+.||..||++||.+|++.|+ |.+++++|.+.|+.||..+||+||.+|++.| +.++|.++|++
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g---~~~~A~~l~~~ 165 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG---DADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC---CHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999 66999999999
Q ss_pred HHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 186 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|+.|+..||+.+++.|++.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999998743
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=6.6e-23 Score=197.69 Aligned_cols=148 Identities=14% Similarity=0.015 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHH---HCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHH
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMI---VQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTL 163 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~l 163 (323)
..+||+||++||+.|++++|.++|++|. ..|+.||..|||+||.+||+.|+ |.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999998876 45899999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC------hhhHHHHH
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH------VELKTTLM 237 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li 237 (323)
|+++|+.|+. .++|.++|++|.+.|+.||.+||+.+|.++.+.+-++. .+++ ..++.|+ ..+...|.
T Consensus 207 I~glcK~G~~--~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~----Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQD--AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA----VHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCC--HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH----HGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCc--HHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH----HHHh-CcccCCCCCCcccccchHHHH
Confidence 9999999943 37899999999999999999999999976665433333 2222 3456655 56677888
Q ss_pred HHHHhcC
Q 040801 238 DAYCKCK 244 (323)
Q Consensus 238 ~~~~~~g 244 (323)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 8888776
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=5.9e-22 Score=191.12 Aligned_cols=130 Identities=10% Similarity=0.113 Sum_probs=115.5
Q ss_pred CcccHHHHHHHhcchhh---HHHHHHHHH---HcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHH
Q 040801 124 DRFMFPSLFKSCADIYV---EKQLHSQAI---KFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197 (323)
Q Consensus 124 ~~~ty~~ll~~~~~~~~---a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t 197 (323)
-..||++||.+||+.|+ |.++|++|. +.|+.||++|||+||++||+.| +.++|.++|++|.+.|+.||.+|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G---~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG---AFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCcHHH
Confidence 34689999999999999 999998876 4589999999999999999999 66999999999999999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 198 LVNVLTARARARDL-RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 198 ~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
||+||.++|+.|+. +.|.++|++|.+.|+.||..+|++++.++.+.+-++.+.++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999985 789999999999999999999999998887775555554443333
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.1e-18 Score=165.49 Aligned_cols=241 Identities=7% Similarity=-0.121 Sum_probs=200.0
Q ss_pred cccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCC------------------------------------------
Q 040801 34 INSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFD------------------------------------------ 71 (323)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~------------------------------------------ 71 (323)
..+..+++.+..++.+.|++++|..+|++|.+.+....
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 34577899999999999999999999999988652210
Q ss_pred ----Cccch----hHHHhcccCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-
Q 040801 72 ----PCADY----HVRLVFSQISN--PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV- 140 (323)
Q Consensus 72 ----~y~~~----~a~~lf~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~- 140 (323)
.|.+. +|.++|+++.. ++..+|+.++..|.+.|++++|.++|++|.+.+ +.+..++..++.++.+.|+
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 03333 89999999984 899999999999999999999999999998765 3478899999999999999
Q ss_pred --HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHH
Q 040801 141 --EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 141 --a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 218 (323)
|.++++.+.+.. ..+..+|+.+..+|.+.| ++++|.++|+++.... ..+..+|+.++.++.+.|++++|..+|
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN---KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998654 457889999999999999 6799999999998754 346789999999999999999999999
Q ss_pred HHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhh
Q 040801 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTA 284 (323)
Q Consensus 219 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a 284 (323)
+++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+. +.++..| .+...+.. .|+.++|
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A 494 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN---KSDMQTA 494 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hCCHHHH
Confidence 9998764 447899999999999999999999999999764 3344444 44444444 4454444
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.80 E-value=9.6e-18 Score=158.95 Aligned_cols=236 Identities=12% Similarity=-0.075 Sum_probs=196.3
Q ss_pred ccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------ccch----hHHHhcccCC---CCChhhHHHHHHH
Q 040801 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------CADY----HVRLVFSQIS---NPTIYTCNSIVRG 99 (323)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--------y~~~----~a~~lf~~m~---~~~~~~~~~li~~ 99 (323)
++..++..++..+.+.|++++|..+|+.+.+.+-.... |.+. +|.++|+++. +.+..+|+.+...
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 56778999999999999999999999999987532111 2222 8888888775 5678899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCCh
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 176 (323)
|.+.|++++|.++|+++.+.. +.+..+|+.+..++.+.|+ |.++++.+.+.+ ..+..+|+.+..+|.+.| ++
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~ 457 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG---NI 457 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT---CH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC---CH
Confidence 999999999999999998742 2356799999999999999 999999998765 347889999999999999 67
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccC--hhhHHHHHHHHHhcCCHHHHH
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWSH--VELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~a~ 250 (323)
++|.++|+++.... ..+..+|+.+...|.+.|++++|..+|+++.+. +..|+ ..+|..+..+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998765 347899999999999999999999999999876 77887 789999999999999999999
Q ss_pred HHHHhccCC-CCchhhh-HHHhhhccCC
Q 040801 251 DLFVKMLFP-WNNYGQW-AMSATVGPQG 276 (323)
Q Consensus 251 ~~~~~m~~~-~~~~~~~-~~~~~~~~~~ 276 (323)
++++++.+. +.++..| .+...+...|
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 999998764 2344444 4555554444
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=3.8e-12 Score=114.08 Aligned_cols=212 Identities=11% Similarity=0.004 Sum_probs=149.1
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYT 101 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~ 101 (323)
.+..+...+.+.|+++.|...++.+.+.. |+. |... +|.+.|+++. +.+..+|+.+-..+.
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555556666666666666666665542 333 1111 6666666554 334566777777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHH
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
+.|++++|.+.|+++.+.. +-+...|..+-..+...|+ |...++...+.. ..+..++..+...|.+.| ++++
T Consensus 181 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g---~~~~ 255 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQG---LIDL 255 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcC---CHHH
Confidence 7777777777777776532 1223455555566666666 666666666543 124677888888899988 6689
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
|.+.|+++...+ +.+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 256 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 256 AIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988754 2356788889999999999999999999988763 45678889999999999999999999999877
Q ss_pred C
Q 040801 259 P 259 (323)
Q Consensus 259 ~ 259 (323)
.
T Consensus 334 ~ 334 (388)
T 1w3b_A 334 V 334 (388)
T ss_dssp S
T ss_pred c
Confidence 5
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=5.4e-12 Score=115.02 Aligned_cols=213 Identities=8% Similarity=-0.095 Sum_probs=153.9
Q ss_pred ccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHH
Q 040801 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIV 97 (323)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li 97 (323)
.+...+..+...+.+.|+++.|..+|+.+.+. .|+. |... .|.+.|+++. +.+...|..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34556788888999999999999999999876 3443 2222 7888887765 45678889999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHH------------hcchhh---HHHHHHHHHHcCCCCchH
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDR----FMFPSLFKS------------CADIYV---EKQLHSQAIKFGLASDSF 158 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~ll~~------------~~~~~~---a~~~~~~m~~~g~~~~~~ 158 (323)
..|.+.|++++|.+.|+++.+. .|+. .++..+... +.+.|+ |...++.+.+.. ..+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999998764 3443 444444333 555555 888888877654 33567
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC-hhhHHHH-
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH-VELKTTL- 236 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l- 236 (323)
++..+..+|.+.| ++++|.+.|+++.... ..+..+|..+...+...|++++|...++.+.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 252 (450)
T 2y4t_A 179 LRELRAECFIKEG---EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHTT---CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 7888888888888 5578888888877643 345677888888888888888888888887754 333 3333333
Q ss_pred -----------HHHHHhcCCHHHHHHHHHhccC
Q 040801 237 -----------MDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 237 -----------i~~~~~~g~~~~a~~~~~~m~~ 258 (323)
...|.+.|++++|...|+++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777888888888877754
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=3.5e-11 Score=107.69 Aligned_cols=237 Identities=12% Similarity=-0.066 Sum_probs=161.5
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC--CC-ChhhHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS--NP-TIYTCNSIVRG 99 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~--~~-~~~~~~~li~~ 99 (323)
...+..+...+.+.|++++|...|+.+.+. .|+. |.+. .|.+.|.++. .| +...+..+-..
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345667777777777888888887777764 3443 1111 6666666554 33 34456666667
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCCh
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQP 176 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 176 (323)
+...|++++|.++|+++.+.. +-+..+|..+-..+.+.|+ |...++.+.+.+ ..+...|..+-..+...| ++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~---~~ 219 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR---IF 219 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT---CT
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC---CH
Confidence 777788888888887776542 2234667777777777777 777777777654 223566777777777777 45
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
++|.+.|++..... +-+..++..+...+.+.|++++|...++++.+.. +-+..+|..+...|.+.|++++|.+.++++
T Consensus 220 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78888887776643 2357788889999999999999999999988763 224678889999999999999999999988
Q ss_pred cCC-CCchhhh-HHHhhhccCCCCCcchhhh
Q 040801 257 LFP-WNNYGQW-AMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 257 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~ 285 (323)
.+. +..+..| .....+ ...|+.++|.
T Consensus 298 l~~~p~~~~~~~~l~~~~---~~~g~~~~A~ 325 (388)
T 1w3b_A 298 LRLCPTHADSLNNLANIK---REQGNIEEAV 325 (388)
T ss_dssp HHHCTTCHHHHHHHHHHH---HTTTCHHHHH
T ss_pred HhhCcccHHHHHHHHHHH---HHcCCHHHHH
Confidence 754 2333444 333333 3445555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.38 E-value=1.6e-11 Score=111.82 Aligned_cols=235 Identities=8% Similarity=-0.038 Sum_probs=176.7
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC--CC-Ch---hhHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS--NP-TI---YTCNS 95 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~--~~-~~---~~~~~ 95 (323)
+...+..+...+...|+++.|...++.+.+.+ |+. |.+. .|.+.|+++. .| +. ..|..
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 45567788888999999999999999998874 443 2222 8888888775 33 33 56666
Q ss_pred HHHH------------HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHH
Q 040801 96 IVRG------------YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160 (323)
Q Consensus 96 li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~ 160 (323)
+... +.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|+ |.+.++.+.+.. ..+..+|
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 214 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 6444 889999999999999997642 3466778888888888888 888888887764 3467889
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC-hHHHHHH------------HHHHhccCChHHHHHHHHHHHHhCCc
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN-AVTLVNV------------LTARARARDLRTVKRVHKCVDESGFW 227 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~ 227 (323)
..+...|...| ++++|++.|+++... .|+ ...+..+ ...+.+.|++++|...++.+.+. .
T Consensus 215 ~~l~~~~~~~g---~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~ 287 (450)
T 2y4t_A 215 YKISTLYYQLG---DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--E 287 (450)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 99999999999 679999999999864 343 3444444 78888999999999999999875 3
Q ss_pred cC-----hhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhh
Q 040801 228 SH-----VELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTA 284 (323)
Q Consensus 228 p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a 284 (323)
|+ ...|..+...|.+.|++++|...++++.+. +..+..| .....+... |+.++|
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---~~~~~A 348 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE---EMYDEA 348 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---cCHHHH
Confidence 44 447888899999999999999999987643 3344444 444445444 445544
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.33 E-value=1.4e-10 Score=102.60 Aligned_cols=215 Identities=10% Similarity=-0.008 Sum_probs=169.1
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVRG 99 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~~ 99 (323)
...+..+-..+...|+++.|...++.+.+. .|+. |... .|.+.|++.. +.+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445667788889999999999999999876 3444 2222 7888887654 5678899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHH---------------HHHHhcchhh---HHHHHHHHHHcCCCC-chHHH
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPS---------------LFKSCADIYV---EKQLHSQAIKFGLAS-DSFLH 160 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~---------------ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~ 160 (323)
|...|++++|.+.|+++.+..-. +...+.. .+..+...|+ |...++.+.+..-.. +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999875321 1111111 1223335555 889999888765321 57889
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHH
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY 240 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 240 (323)
..+...|.+.| ++++|.+.|++..... +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 221 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 221 CGLGVLFNLSG---EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 99999999999 7799999999988754 3467899999999999999999999999998763 33577899999999
Q ss_pred HhcCCHHHHHHHHHhccCC
Q 040801 241 CKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.|++++|...|++..+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=3.4e-10 Score=94.77 Aligned_cols=198 Identities=8% Similarity=-0.083 Sum_probs=164.8
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
...+..+...+...|+++.|...++...+.. +.+...|..+...|...|++++|.+.|++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------------------PSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456777788889999999999999998874 456778999999999999999999999998
Q ss_pred HHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC
Q 040801 117 IVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192 (323)
Q Consensus 117 ~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~ 192 (323)
.+.. +.+...+..+...+...|+ |.+.++.+.+.+..| +...+..+...|...| ++++|.+.|++..... .
T Consensus 98 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~ 172 (252)
T 2ho1_A 98 LASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK---KPAQAKEYFEKSLRLN-R 172 (252)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-S
T ss_pred HHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-c
Confidence 7653 2356777788888888888 888888887744445 5677888999999999 6799999999988754 3
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+...+..+...+...|+.++|...++.+.+.. +.+...+..+...|.+.|+.++|.+.++++.+.
T Consensus 173 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999987753 345677888999999999999999999998764
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.31 E-value=7.5e-11 Score=104.57 Aligned_cols=217 Identities=13% Similarity=-0.036 Sum_probs=167.9
Q ss_pred ccchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHH
Q 040801 35 NSQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIV 97 (323)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li 97 (323)
.+...+..+...+.+.|+++.|..+|+.+.+.. |+. |... .|.+.|++.. +.+...|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 345567788888999999999999999999874 444 2222 7888887765 55688899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCC---------CCcccHHHHHHHhcchhh---HHHHHHHHHHcCCC-CchHHHHHHH
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLI---------PDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLA-SDSFLHNTLI 164 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~---------p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~-~~~~~~~~li 164 (323)
..|...|++++|.+.|++..+..-. .....+..+...+.+.|+ |...++.+.+..-. .+..+|..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998764210 012233445677777888 99999998877522 2688999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
..|.+.| ++++|.+.|++..... +.+..+|..+...+...|++++|...++++.+.. +.+...|..+...|.+.|
T Consensus 221 ~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 221 VLFHLSG---EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 9999999 7799999999998764 3467899999999999999999999999998863 234788999999999999
Q ss_pred CHHHHHHHHHhccC
Q 040801 245 FVSRAWDLFVKMLF 258 (323)
Q Consensus 245 ~~~~a~~~~~~m~~ 258 (323)
++++|...|++..+
T Consensus 296 ~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 296 AYREAVSNFLTALS 309 (365)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998865
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.30 E-value=5.7e-10 Score=96.71 Aligned_cols=245 Identities=11% Similarity=-0.003 Sum_probs=180.8
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSIVR 98 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~li~ 98 (323)
+...+......+...|++++|..+++.+.+.. |+. |... .|.+.|++.. +.+...|..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 33455667778888999999999999998863 434 1111 7788887664 557788999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCc-ccHHHH--------------HH-Hhcchhh---HHHHHHHHHHcCCCCchHH
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDR-FMFPSL--------------FK-SCADIYV---EKQLHSQAIKFGLASDSFL 159 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~l--------------l~-~~~~~~~---a~~~~~~m~~~g~~~~~~~ 159 (323)
.|...|++++|.+.|++..+.. |+. ..+..+ -. .+...|+ |.+.++.+.+.. ..+..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999998752 332 333332 11 2666666 888888888765 236788
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHH
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 239 (323)
+..+...|.+.| ++++|.+.+++..... ..+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 175 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 175 HASLGVLYNLSN---NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 999999999999 7799999999998764 3467889999999999999999999999998764 3357789999999
Q ss_pred HHhcCCHHHHHHHHHhccCCCCch-----------hhhHHHhhhccCCCCCcchhhhhhhCC
Q 040801 240 YCKCKFVSRAWDLFVKMLFPWNNY-----------GQWAMSATVGPQGLVGRHSTAHQISGP 290 (323)
Q Consensus 240 ~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~l~~~ 290 (323)
|.+.|++++|.+.+++..+..... ....+......+...|+.++|..+...
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999886541110 122333333334445666666666553
No 15
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=5.5e-10 Score=96.49 Aligned_cols=188 Identities=9% Similarity=-0.061 Sum_probs=142.3
Q ss_pred HHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHH-HHHhcchhh---HHHHHHHHHHcCC
Q 040801 78 VRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSL-FKSCADIYV---EKQLHSQAIKFGL 153 (323)
Q Consensus 78 a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~~~---a~~~~~~m~~~g~ 153 (323)
|..-++....|+..++..+...+.+.|+.++|++.++++...+..|+...+..+ -..+...|+ |.+.++.
T Consensus 53 al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------ 126 (291)
T 3mkr_A 53 VLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------ 126 (291)
T ss_dssp HHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------
T ss_pred HHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------
Confidence 333333333667788999999999999999999999999988877776555444 477777787 6665554
Q ss_pred CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHH---HHHHHHHhccCChHHHHHHHHHHHHhCCccCh
Q 040801 154 ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTL---VNVLTARARARDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
..+...+..+...|.+.| ++++|.+.|+++.... |+.... ...+..+...|++++|..+|+++.+. .+.+.
T Consensus 127 ~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~ 200 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLD---RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTL 200 (291)
T ss_dssp CCSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcH
Confidence 467788999999999999 6699999999998864 654322 12334444568999999999999887 45678
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGL 277 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~ 277 (323)
..++.+..+|.+.|++++|...|++..+. +.++..+ .....+...|+
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999997653 5566666 44445545443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.28 E-value=5.3e-10 Score=97.02 Aligned_cols=242 Identities=10% Similarity=-0.071 Sum_probs=183.4
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----ccch--------hHHHhcccCC---CCChhhHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----CADY--------HVRLVFSQIS---NPTIYTCNSIVRGYT 101 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----y~~~--------~a~~lf~~m~---~~~~~~~~~li~~~~ 101 (323)
...+..+...+...|+++.|..+++.+.+..-.... ++.+ .|.++|+++. +.+...|..+-..+.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 345566777788889999999999999876432222 1111 7777777665 557788999999999
Q ss_pred hCC-ChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChH
Q 040801 102 NKN-LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD 177 (323)
Q Consensus 102 ~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 177 (323)
..| ++++|.+.|++..+.. +.+...|..+-..+...|+ |...++...+..- .+...+..+...|...| +++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~---~~~ 176 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN---NSK 176 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT---CHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh---hHH
Confidence 999 9999999999988653 2346778888888888888 8888888887652 24566777999999999 779
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC--------CccChhhHHHHHHHHHhcCCHHHH
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--------FWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
+|.+.|++..... +.+..++..+...+...|++++|...++.+.+.. .......+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988754 4467889999999999999999999999997642 133467899999999999999999
Q ss_pred HHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhhhhh
Q 040801 250 WDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 250 ~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~~l 287 (323)
...+++..+. +..+..| .+...+.. .|+.++|...
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 292 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSL---MGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHH---HTCHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHH---hccHHHHHHH
Confidence 9999998754 2333444 34444433 4555555433
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.25 E-value=3.6e-09 Score=86.37 Aligned_cols=198 Identities=6% Similarity=-0.143 Sum_probs=159.0
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
...+..+...+...|+++.|...++...+.. +.+...|..+...|...|++++|.+.|++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-------------------PKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------------------ccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4456777788888999999999999988874 445778888999999999999999999998
Q ss_pred HHCCCCCCcccHHHHHHHhcch-hh---HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 117 IVQGLIPDRFMFPSLFKSCADI-YV---EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 117 ~~~g~~p~~~ty~~ll~~~~~~-~~---a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
.+.. +.+..++..+...+... |+ |...++.+.+.+..|+ ...+..+...|...| ++++|.+.|++.....
T Consensus 69 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~- 143 (225)
T 2vq2_A 69 LSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG---QFGLAEAYLKRSLAAQ- 143 (225)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-
T ss_pred HHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-
Confidence 7642 23566778888888888 77 8888888877433343 577888888999988 6799999999988754
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 192 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
..+...+..+...+...|++++|...++.+.+..-..+...+..+...+.+.|+.++|..+++.+.+
T Consensus 144 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3357888889999999999999999999987764224667788888888999999999999998864
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.21 E-value=6.9e-10 Score=92.06 Aligned_cols=197 Identities=11% Similarity=0.033 Sum_probs=150.1
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
...+..+-..+...|+++.|...++...+.. +.+...|..+-..|.+.|++++|.+.|++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 83 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------------------KEDAIPYINFANLLSSVNELERALAFYDKA 83 (243)
T ss_dssp -------------------CCTTHHHHHTTC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456666777888899999999999988753 456788899999999999999999999998
Q ss_pred HHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 117 IVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 117 ~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
.+.. +.+..++..+...+...|+ |.+.++...+.. ..+...+..+...|.+.| ++++|.+.+++..... ..
T Consensus 84 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~~ 157 (243)
T 2q7f_A 84 LELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE---QPKLALPYLQRAVELN-EN 157 (243)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHC-TT
T ss_pred HHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhC-Cc
Confidence 7652 2356777778888888887 888898888765 346778899999999999 7799999999988754 34
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|+.++|.+.+++..+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 67889999999999999999999999998764 335778999999999999999999999998764
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.20 E-value=7.2e-09 Score=89.78 Aligned_cols=220 Identities=11% Similarity=-0.035 Sum_probs=175.7
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-------------cc-ch-hHHHhcccCC---CCChhhHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------------CA-DY-HVRLVFSQIS---NPTIYTCNSIVRGY 100 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-------------y~-~~-~a~~lf~~m~---~~~~~~~~~li~~~ 100 (323)
.+..+...+...|+++.|..+++.+.+.. |+. -+ .. .|.+.|++.. +.+...|..+-..+
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 135 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF 135 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44556778888899999999999998864 333 11 12 6888887654 45678899999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChH
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD 177 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 177 (323)
...|++++|.+.|++..+.. +.+...+..+-..+...|+ |.+.++...+.. ..+..++..+...|...| +++
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~---~~~ 210 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNG---EWK 210 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT---CHH
T ss_pred HHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc---cHH
Confidence 99999999999999987753 2345667778788888887 888888887764 345788999999999999 779
Q ss_pred HHHHHHHHHHHcC--------CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 178 EAIKIFYRMEIEN--------VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 178 ~a~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
+|.+.|++..... ...+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|+.++|
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHH
Confidence 9999999987632 13446799999999999999999999999998864 33678899999999999999999
Q ss_pred HHHHHhccCC-CCchhhh
Q 040801 250 WDLFVKMLFP-WNNYGQW 266 (323)
Q Consensus 250 ~~~~~~m~~~-~~~~~~~ 266 (323)
.+.+++..+. +..+..+
T Consensus 290 ~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHHHHTTTTTCSCCHHHH
T ss_pred HHHHHHHHccCCCchHHH
Confidence 9999999875 3344444
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.18 E-value=6.9e-11 Score=106.33 Aligned_cols=220 Identities=10% Similarity=0.021 Sum_probs=103.7
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---ccch----hHHHhcccCC--CCChhhHHHHHHHHHhCCChHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---CADY----HVRLVFSQIS--NPTIYTCNSIVRGYTNKNLHHE 108 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---y~~~----~a~~lf~~m~--~~~~~~~~~li~~~~~~g~~~~ 108 (323)
..|..+..++.+.|++++|...|.........-.. +... +|.+.++... .++..+.+.++.+|.+.|++++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e 112 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 112 (449)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHH
Confidence 48889999999999999999999654221111111 2222 6666555444 4556789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 040801 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYR 185 (323)
Q Consensus 109 A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~ 185 (323)
+.++++ .|+..+|..+-..|...|. |...|..+ ..|..|.+++++.| ++++|++.+++
T Consensus 113 ~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg---~yq~AVea~~K 173 (449)
T 1b89_A 113 LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG---EYQAAVDGARK 173 (449)
T ss_dssp HTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 998885 3788899999999999999 88888866 47999999999999 67999999998
Q ss_pred HHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchh
Q 040801 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYG 264 (323)
Q Consensus 186 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~ 264 (323)
+ -++.||..++.+|+..|+++.|...... +...+.-...++..|.+.|++++|..+++....- +....
T Consensus 174 A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 174 A------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp H------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred c------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 7 3789999999999999999999554443 2223334557999999999999999999987643 33445
Q ss_pred hhHHHhhhccCCCCCcchhhhhh
Q 040801 265 QWAMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~l 287 (323)
.|+-+..+-..-+-++..+.+++
T Consensus 243 ~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 243 MFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Confidence 56544444444445555555444
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.17 E-value=1.5e-11 Score=110.70 Aligned_cols=208 Identities=5% Similarity=-0.035 Sum_probs=58.0
Q ss_pred HhhcCCCchHHHHHHHHHHHhcCCCCC---ccch----hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 46 SLEKCSTMRELKQIHAQMLRTSLFFDP---CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 46 ~~~~~~~~~~a~~i~~~m~~~~~~~~~---y~~~----~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.+.++|++++|.+.++.+....++... |.+. +|.+.|.. .+|...|..++.++...|++++|.++++..++
T Consensus 12 ll~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345667778888888777443322222 2222 55555543 45555677777777777777777775544444
Q ss_pred CCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh
Q 040801 119 QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195 (323)
Q Consensus 119 ~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~ 195 (323)
. .++..+.+.++.+|.+.|+ +.++++ .|+..+|+.+-+.|...| .+++|...|..+
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g---~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEK---MYDAAKLLYNNV--------- 148 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC-------------------CTTTHHHHHHHT---------
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHh---------
Confidence 2 3446667777777777766 332221 255667777777777777 446777777655
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccC
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQ 275 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 275 (323)
..|..+..++++.|+++.|.+.+.++ .++.+|..++.+|+..|+++.|......+.. .|... ..++..+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~---~ad~l--~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADEL--EELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT---CHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh---CHhhH--HHHHHHH
Confidence 36677777777777777777777765 2567777777777777777777555544332 22221 1222333
Q ss_pred CCCCcchhhhhh
Q 040801 276 GLVGRHSTAHQI 287 (323)
Q Consensus 276 ~~~~~~~~a~~l 287 (323)
.+.|+.+++..+
T Consensus 218 ek~G~~eEai~l 229 (449)
T 1b89_A 218 QDRGYFEELITM 229 (449)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHCCCHHHHHHH
Confidence 445556666444
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.16 E-value=5.3e-09 Score=90.24 Aligned_cols=190 Identities=9% Similarity=-0.018 Sum_probs=137.2
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
+...+...+...++.+.|.+.++.+...+. .| +...+..+-..+...|++++|++.+++
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~------------------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSV------------------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCC------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhccc------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 334444444444455555555555444432 34 444555566889999999999999987
Q ss_pred HCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHH---HHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 118 VQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH---NTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
+.+...+..+...+.+.|+ |.+.++.+.+.. |+.... ..++..+...| ++++|..+|+++....
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~---~~~eA~~~~~~~l~~~- 196 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGE---KLQDAYYIFQEMADKC- 196 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHS-
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHhC-
Confidence 4667788888888888888 888888888775 654322 22334444446 6799999999998873
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH-HHHHHHhccCC
Q 040801 192 KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR-AWDLFVKMLFP 259 (323)
Q Consensus 192 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 259 (323)
+.+...++.+-.++.+.|++++|+..+++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5678889999999999999999999999988763 2367788889999999999876 57888887653
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.14 E-value=1e-08 Score=84.34 Aligned_cols=190 Identities=10% Similarity=-0.063 Sum_probs=105.6
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.+..+-..+.+.|++++|...++...+.. +.+...|..+-..+.+.|++++|.+.|++..+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-------------------PQDPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555556666777777777777766553 34556666777777777777777777777665
Q ss_pred CCCCCC-cccHHHHHHHhcch-----------hh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHH
Q 040801 119 QGLIPD-RFMFPSLFKSCADI-----------YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 119 ~g~~p~-~~ty~~ll~~~~~~-----------~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~ 183 (323)
. .|+ ...+..+-..+... |+ |...++...+.. .-+...|..+-..|...| ++++|++.|
T Consensus 68 ~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g---~~~~A~~~~ 141 (217)
T 2pl2_A 68 R--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLG---ERDKAEASL 141 (217)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC---ChHHHHHHH
Confidence 3 233 34555555555555 55 555555555543 113455555666666666 446666666
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
++..+.. .+...+..+-..+...|++++|...++...+.. +-+...+..+...|.+.|+.++|...+++.
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666555 455666666666666666666666666665542 223455556666666666666666665543
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.08 E-value=8.6e-09 Score=86.08 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=138.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
...|..+-..+...|++++|.+.|++..+.. +.+..++..+...+...|+ |.+.++...+.. ..+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5668888899999999999999999987753 3356778888888888888 889999888765 2367889999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 245 (323)
|...| ++++|.+.|++....+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus 115 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQK---RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTT---CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHh---HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 99999 7799999999998743445 56788888999999999999999999998764 3357888999999999999
Q ss_pred HHHHHHHHHhccCC
Q 040801 246 VSRAWDLFVKMLFP 259 (323)
Q Consensus 246 ~~~a~~~~~~m~~~ 259 (323)
.++|...+++..+.
T Consensus 191 ~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 191 YVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.3e-09 Score=96.00 Aligned_cols=237 Identities=7% Similarity=-0.134 Sum_probs=165.8
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---------ccch----hHHHhcccCC---CCChhhHHHHHHHHHh
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYTN 102 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~~ 102 (323)
.+...-..+.+.|+++.|...|+++.+.. |+. |.+. .|.+.|++.. +.+...|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34455567778899999999999998876 454 2211 7777777654 5567889999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccH------------------------------------------------------
Q 040801 103 KNLHHEAFLFYHEMIVQGLIPDRFMF------------------------------------------------------ 128 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g~~p~~~ty------------------------------------------------------ 128 (323)
.|++++|.+.|+++...+- ++....
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999876542 111111
Q ss_pred -----------------------HHHHHH--hc---chhh---HHHHHHHHHH-----cCCC--------CchHHHHHHH
Q 040801 129 -----------------------PSLFKS--CA---DIYV---EKQLHSQAIK-----FGLA--------SDSFLHNTLI 164 (323)
Q Consensus 129 -----------------------~~ll~~--~~---~~~~---a~~~~~~m~~-----~g~~--------~~~~~~~~li 164 (323)
..+..+ +. +.|+ |..+++.+.+ ..-. .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111111 11 2455 8888888877 3212 2356788888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
..|...| ++++|.+.|++..... |+..++..+...+...|++++|...++.+.+.. +.+...|..+...|.+.|
T Consensus 245 ~~~~~~~---~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 245 IFKFLKN---DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHSS---CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHCC---CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999 6799999999988765 338888888899999999999999999887753 335677888888999999
Q ss_pred CHHHHHHHHHhccCC-CCchhhhHHHhhhccCCCCCcchhhhh
Q 040801 245 FVSRAWDLFVKMLFP-WNNYGQWAMSATVGPQGLVGRHSTAHQ 286 (323)
Q Consensus 245 ~~~~a~~~~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (323)
++++|...+++..+. +..+..+ ......+...|+.++|..
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPY--IQLACLAYRENKFDDCET 359 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHH--HHHHHHTTTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHH--HHHHHHHHHcCCHHHHHH
Confidence 999999999988654 2223333 222333344556665543
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.07 E-value=3.2e-08 Score=80.62 Aligned_cols=166 Identities=10% Similarity=0.002 Sum_probs=138.1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+ |.+.++...+.. ..+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 355678889999999999999999999987742 2346678888888888888 888888888765 33677889999
Q ss_pred HHHHhc-CCCCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh
Q 040801 165 NMYSSC-WCLDQPDEAIKIFYRMEIENVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK 242 (323)
Q Consensus 165 ~~~~~~-g~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 242 (323)
..|... | ++++|.+.|++....+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|.+
T Consensus 84 ~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 84 WFLCGRLN---RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC---cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHH
Confidence 999999 9 7799999999998733334 36788889999999999999999999998764 2357788999999999
Q ss_pred cCCHHHHHHHHHhccCC
Q 040801 243 CKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~~ 259 (323)
.|++++|...+++..+.
T Consensus 160 ~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.05 E-value=1.9e-09 Score=95.49 Aligned_cols=193 Identities=7% Similarity=-0.081 Sum_probs=140.2
Q ss_pred hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHH
Q 040801 77 HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150 (323)
Q Consensus 77 ~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~ 150 (323)
.|.++|++.. +.+...|..+-..|.+.|++++|.+.|++..+.. +.+..+|..+...+...|+ |...++.+.+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 7777777664 5577888999999999999999999999887642 2346778888888888888 8888888776
Q ss_pred cCCCCc-----------hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHhccCChHHHHHHH
Q 040801 151 FGLASD-----------SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK-PNAVTLVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 151 ~g~~~~-----------~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~ 218 (323)
.. |+ ...+..+...|.+.| ++++|.+.|+++....-. ++..++..+...+...|++++|...+
T Consensus 162 ~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 162 QN--PKYKYLVKNKKGSPGLTRRMSKSPVDSS---VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp HC--HHHHCC-------------------CCH---HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hC--ccchHHHhhhccchHHHHHHHHHHhhhh---hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 53 22 233344577788888 668999999998875422 26889999999999999999999999
Q ss_pred HHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCC
Q 040801 219 KCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQG 276 (323)
Q Consensus 219 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~ 276 (323)
+++.+.. +.+..+|..+...|.+.|++++|...|++..+. +..+..| .+...+...|
T Consensus 237 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 237 NAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9998863 335788999999999999999999999998764 2334444 4444444444
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.04 E-value=1.2e-08 Score=83.85 Aligned_cols=190 Identities=11% Similarity=-0.016 Sum_probs=142.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
++...|..+-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|+ |...++...+.. ..+...+..+-
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456678888889999999999999999987642 2355677777777777777 888888888765 23467788888
Q ss_pred HHHHhc-----------CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH
Q 040801 165 NMYSSC-----------WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233 (323)
Q Consensus 165 ~~~~~~-----------g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 233 (323)
..|.+. | ++++|++.|++..+.. +-+...+..+-..+...|++++|...+++..+.. .+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKG---YLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHTCSSHHHHHH---HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHhhhhhhhhccccc---CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 889988 8 6799999999988754 2356788888899999999999999999999987 688899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhhhhhh
Q 040801 234 TTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTAHQIS 288 (323)
Q Consensus 234 ~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~~l~ 288 (323)
..+-..|...|++++|...|++..+. +..+..+ .+...+ ...|+.++|...+
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~---~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL---LLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH---TC-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HHccCHHHHHHHH
Confidence 99999999999999999999998764 3333333 333333 3445555554433
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.03 E-value=5.5e-09 Score=90.41 Aligned_cols=215 Identities=8% Similarity=-0.119 Sum_probs=165.0
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHHH--
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNSI-- 96 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~l-- 96 (323)
+...+..+...+...|+++.|...++...+.. |+. |... .|.+.|++.. +.+...+..+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence 34456677788889999999999999998873 443 2111 7777776654 2333334333
Q ss_pred ------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHH
Q 040801 97 ------------VR-GYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH 160 (323)
Q Consensus 97 ------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~ 160 (323)
-. .+...|++++|.+.+++..+.. +.+..++..+...+.+.|+ |.+.++...+.. ..+..+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 22 3778899999999999997753 2366788888888888888 888888887764 3357889
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-----------C
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-----------H 229 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~ 229 (323)
..+...|...| ++++|.+.|++..... ..+..++..+...+...|++++|...++.+.+..-.. +
T Consensus 210 ~~l~~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 210 NKLGATLANGN---RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence 99999999999 7799999999988754 3467889999999999999999999999997753221 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
...|..+..+|.+.|+.++|..++++..+
T Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999886554
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=4.4e-08 Score=81.58 Aligned_cols=204 Identities=10% Similarity=-0.061 Sum_probs=152.6
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---------ccch----hHHHhcccCC--CC----C----hhhHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---------CADY----HVRLVFSQIS--NP----T----IYTCNS 95 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---------y~~~----~a~~lf~~m~--~~----~----~~~~~~ 95 (323)
.+..+-..+...|+++.|...++...+.. .+. |... .|.+.|.+.. .| + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45667778888999999999999999887 333 1111 6666666543 11 1 577888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 172 (323)
+-..|.+.|++++|.+.|++..+. .|+.. .+.+.|+ +...++...+.. ..+...|..+...|...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS- 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc-
Confidence 888888999999999998888763 34422 2333344 777777776643 224567888888888988
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
++++|.+.|++..... +.+..+|..+...+...|++++|...++...+.. +.+...|..+...|.+.|+.++|.+.
T Consensus 154 --~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 --DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp --CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6699999999988754 3467888889999999999999999999988764 33477788888999999999999999
Q ss_pred HHhccCC
Q 040801 253 FVKMLFP 259 (323)
Q Consensus 253 ~~~m~~~ 259 (323)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
No 31
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.02 E-value=4.3e-08 Score=85.69 Aligned_cols=194 Identities=7% Similarity=-0.147 Sum_probs=156.8
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.+..+-..+...|+++.|...++...+.. +.+...|..+-..+...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 65 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-------------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44556677888999999999999999874 45677888899999999999999999999876
Q ss_pred CCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC----chHHHHHH------------HHHHHhcCCCCChHHH
Q 040801 119 QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS----DSFLHNTL------------INMYSSCWCLDQPDEA 179 (323)
Q Consensus 119 ~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~----~~~~~~~l------------i~~~~~~g~~~~~~~a 179 (323)
.. +-+...+..+-..+...|+ |...++...+.. | +...+..+ ...+...| ++++|
T Consensus 66 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~A 139 (359)
T 3ieg_A 66 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGA---DYTAA 139 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred hC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHH
Confidence 42 2245677777888888887 888888887654 4 34444444 47788888 77999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++..+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998764 3467888999999999999999999999998763 346788999999999999999999999988754
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.01 E-value=8.4e-09 Score=91.05 Aligned_cols=213 Identities=10% Similarity=-0.092 Sum_probs=164.6
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC---CCChhhHHH---
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS---NPTIYTCNS--- 95 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~---~~~~~~~~~--- 95 (323)
+...+..+...+...|+++.|...++...+.. |+. |... .|.+.|++.. +.+...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34466778888999999999999999998874 444 2222 7777777654 222222321
Q ss_pred ------------HHHHHHhCCChHHHHHHHHHHHHCCCC-CCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHH
Q 040801 96 ------------IVRGYTNKNLHHEAFLFYHEMIVQGLI-PDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFL 159 (323)
Q Consensus 96 ------------li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~ 159 (323)
.+..+...|++++|.+.|+++.+..-. ++..++..+-..+.+.|+ |...++...+.. ..+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 245555899999999999999774321 146788888888888888 888998888764 235788
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc----------C
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS----------H 229 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----------~ 229 (323)
|..+...|.+.| ++++|.+.|++..... +.+..++..+...+.+.|++++|...++.+.+..-.. .
T Consensus 254 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 254 WNKLGATLANGN---QSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 999999999999 7799999999998754 3467899999999999999999999999997642111 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 230 VELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
...|..+..+|.+.|+.++|..++++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 57899999999999999999998874
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=1.7e-08 Score=86.65 Aligned_cols=208 Identities=11% Similarity=-0.033 Sum_probs=150.7
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 115 (323)
....+..+...+...|+++.|..+++...+..- +....-.......+..+-..|...|++++|.+.|++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE-----------KTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445677888889999999999999998887411 000000033456788888999999999999999998
Q ss_pred HHHC------C-CCCCcccHHHHHHHhcchhh---HHHHHHHHHHc------CCCC-chHHHHHHHHHHHhcCCCCChHH
Q 040801 116 MIVQ------G-LIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF------GLAS-DSFLHNTLINMYSSCWCLDQPDE 178 (323)
Q Consensus 116 m~~~------g-~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~~~~ 178 (323)
..+. + ......++..+-..+...|+ |...++...+. +-.| ...++..+-..|...| ++++
T Consensus 95 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~ 171 (311)
T 3nf1_A 95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG---KYEE 171 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHH
Confidence 8653 1 12234667777778888887 77777777654 3223 4566888888999988 6799
Q ss_pred HHHHHHHHHHc------CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhC--------------------------
Q 040801 179 AIKIFYRMEIE------NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESG-------------------------- 225 (323)
Q Consensus 179 a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-------------------------- 225 (323)
|.+.|++.... +-.| ...++..+...+...|++++|...++++.+..
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999988764 2233 34578888899999999999999999987531
Q ss_pred ----------------------CccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 226 ----------------------FWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 226 ----------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
-..+..++..+...|.+.|++++|.+.+++..
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12234567777788888888888888887654
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.98 E-value=4.7e-08 Score=90.07 Aligned_cols=217 Identities=10% Similarity=-0.095 Sum_probs=166.0
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-------ccch----hHHHhcccCC---CCChhhHHHHHHHHHh
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYTN 102 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~~ 102 (323)
...+..+...+...|+++.|...++...+..-.+.. |... .|.+.|++.. +.+...|..+...|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 345566777888899999999999999887644111 1111 6666666543 4567788889999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHH
Q 040801 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a 179 (323)
.|++++|.+.|++..+.. +.+..++..+...+...|+ |...++.+.+.. ..+..+|..+...|.+.| ++++|
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~---~~~~A 391 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN---DFDKA 391 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT---CHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC---CHHHH
Confidence 999999999999987753 2356778888888888888 888888887654 235677888888999988 66899
Q ss_pred HHHHHHHHHcCC-CCC----hHHHHHHHHHHhc---cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHH
Q 040801 180 IKIFYRMEIENV-KPN----AVTLVNVLTARAR---ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 180 ~~~~~~m~~~g~-~p~----~~t~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
.+.|++...... .++ ..+|..+...+.. .|++++|...++.+.+.. +.+...+..+...|.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 999988876321 122 3488888889999 999999999999988763 3356778888899999999999999
Q ss_pred HHHhccCC
Q 040801 252 LFVKMLFP 259 (323)
Q Consensus 252 ~~~~m~~~ 259 (323)
.|++..+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.98 E-value=2e-08 Score=84.70 Aligned_cols=165 Identities=7% Similarity=-0.110 Sum_probs=108.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTL 163 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~l 163 (323)
+.+...|..+-..|...|++++|.+.|++..+.. +.+..++..+-..+.+.|+ |...++.+.+.. |+.......
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~ 150 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLW 150 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 4456777777778888888888888887776642 2245667777777777777 777777776643 444444444
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc--c-ChhhHHHHHHHH
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW--S-HVELKTTLMDAY 240 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~ 240 (323)
+..+...| ++++|.+.+++..... .++...+. +...+...++.++|...+....+.... | +...|..+...|
T Consensus 151 ~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 151 LYLAEQKL---DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHHHHHH---CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 44555556 5678888887666543 33444443 666666777777777777766443211 1 146677777888
Q ss_pred HhcCCHHHHHHHHHhccCC
Q 040801 241 CKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.|++++|...|++..+.
T Consensus 226 ~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhC
Confidence 8888888888888887765
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.1e-08 Score=83.58 Aligned_cols=180 Identities=12% Similarity=-0.033 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcC--CCCc----hHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG--LASD----SFLHN 161 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g--~~~~----~~~~~ 161 (323)
..|..+-..+...|++++|.++|++..+.. .+..+|..+-..+...|+ |.+.++...+.. ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456777778888888888888888887766 777788888888887777 777777766543 1112 57788
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcC------------------------CCC-ChHHHHHHHHHHhccCChHHHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIEN------------------------VKP-NAVTLVNVLTARARARDLRTVKR 216 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g------------------------~~p-~~~t~~~li~~~~~~~~~~~a~~ 216 (323)
.+...|...| ++++|.+.|++..... ..| +...+..+...+...|++++|..
T Consensus 84 ~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 84 RIGNAYHKLG---DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcc---cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888 6688888888877632 222 45678888889999999999999
Q ss_pred HHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCC
Q 040801 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQG 276 (323)
Q Consensus 217 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~ 276 (323)
.++.+.+.. +.+...|..+...|.+.|++++|...+++..+. +..+..| .....+...|
T Consensus 161 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 161 AYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999998764 336788999999999999999999999998754 2334444 3334443333
No 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.94 E-value=1.7e-07 Score=81.82 Aligned_cols=236 Identities=8% Similarity=-0.052 Sum_probs=171.2
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC----------ccch----hHHHhcccCC--CC----ChhhHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP----------CADY----HVRLVFSQIS--NP----TIYTCNSI 96 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~----------y~~~----~a~~lf~~m~--~~----~~~~~~~l 96 (323)
...+..+...+...|+++.|...++...+.. |+. |... .|.+.|++.. .| +...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 3466777788888999999999999998773 444 2111 7888887764 33 44555555
Q ss_pred ------------HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHH
Q 040801 97 ------------VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 97 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~ 161 (323)
...+...|++++|.++|++..+.. +.+...+..+-..+...|+ |...++...+.. ..+..++.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 192 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 478899999999999999987652 3456777788888888888 888888887754 34678889
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHH------------HHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN------------VLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
.+...|...| ++++|.+.|++..... ..+...+.. +...+.+.|++++|...++.+.+.. |+
T Consensus 193 ~la~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 266 (359)
T 3ieg_A 193 KISTLYYQLG---DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 266 (359)
T ss_dssp HHHHHHHHHT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence 9999999999 6799999999988754 223333332 2556889999999999999998764 33
Q ss_pred h-----hhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhhh
Q 040801 230 V-----ELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 230 ~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~ 285 (323)
. ..+..+...|.+.|++++|...+++..+. +..+..| .....+.. .|+.++|.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~ 326 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI---EEMYDEAI 326 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cCCHHHHH
Confidence 2 23556778999999999999999999874 3344444 34444433 45555553
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.92 E-value=6.7e-07 Score=75.67 Aligned_cols=213 Identities=13% Similarity=-0.047 Sum_probs=161.2
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHh----CCChHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN----KNLHHEAFLFY 113 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 113 (323)
..+..+-..+...+++++|...|+...+.+. ...+..+-..|.. .+++++|.+.|
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 65 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKE---------------------NSGCFNLGVLYYQGQGVEKNLKKAASFY 65 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---------------------HHHHHHHHHHHHcCCCcCCCHHHHHHHH
Confidence 3455566677788899999999998887542 3566777778888 99999999999
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcc----hhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCCCChHHHHHH
Q 040801 114 HEMIVQGLIPDRFMFPSLFKSCAD----IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS----CWCLDQPDEAIKI 182 (323)
Q Consensus 114 ~~m~~~g~~p~~~ty~~ll~~~~~----~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~~~~a~~~ 182 (323)
++-.+.+ +...+..+-..+.. .++ |.+.++...+.+ +...+..+-..|.. .| ++++|++.
T Consensus 66 ~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~---~~~~A~~~ 136 (273)
T 1ouv_A 66 AKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR---DFKKAVEY 136 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC---CHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc---CHHHHHHH
Confidence 9988876 56667777666665 566 888888888875 67788888888888 77 77999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 040801 183 FYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK----CKFVSRAWDLFV 254 (323)
Q Consensus 183 ~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 254 (323)
|++..+.+ +...+..+-..+.. .++.++|...+++..+.+ +...+..+-..|.+ .++.++|...|+
T Consensus 137 ~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 137 FTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 99988866 56677777777777 899999999999998875 46777888888999 999999999999
Q ss_pred hccCCCCchhhh-HHHhhhcc-CCCCCcchhhhhh
Q 040801 255 KMLFPWNNYGQW-AMSATVGP-QGLVGRHSTAHQI 287 (323)
Q Consensus 255 ~m~~~~~~~~~~-~~~~~~~~-~~~~~~~~~a~~l 287 (323)
+..+.+. +..+ .+...+.. .+..++.++|...
T Consensus 211 ~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 211 KACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9887654 3333 33333332 2334555555433
No 39
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.91 E-value=1.2e-07 Score=74.41 Aligned_cols=162 Identities=10% Similarity=-0.056 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
..|..+-..+...|++++|.+.|++..+.. +.+..++..+...+...|+ |.+.++...+.. ..+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 457778888999999999999998886542 2356677777778888877 888888887764 34577888899999
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
...| ++++|.+.|++..... ..+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|+.+
T Consensus 87 ~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQ---KYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhc---CHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 9999 7799999999988764 4577888899999999999999999999998764 345788999999999999999
Q ss_pred HHHHHHHhccCC
Q 040801 248 RAWDLFVKMLFP 259 (323)
Q Consensus 248 ~a~~~~~~m~~~ 259 (323)
+|...+++..+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999987653
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.91 E-value=1.6e-08 Score=83.59 Aligned_cols=183 Identities=10% Similarity=-0.020 Sum_probs=127.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTL 163 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~l 163 (323)
......|..+-..+...|++++|.++|++..+.. +.+...+..+...+...|+ |.+.++...+.. ..+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3455667888888999999999999999998742 3356777777788888887 888888888765 3467888999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC 243 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 243 (323)
...|...| ++++|.+.|++..... ..+...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.
T Consensus 98 a~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 98 GNVYVVKE---MYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 99999999 7799999999998765 3467889999999999999999999999998763 33677889999999999
Q ss_pred CCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCC
Q 040801 244 KFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQG 276 (323)
Q Consensus 244 g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~ 276 (323)
|++++|...+++..+. +..+..| .+...+...+
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 9999999999998754 2334444 4444444444
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.86 E-value=1.1e-06 Score=76.08 Aligned_cols=166 Identities=8% Similarity=-0.032 Sum_probs=132.0
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF--MFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~ 161 (323)
+.+...|..+...+.+.|++++|.++|++..+ +.|+.. .|..+...+.+.|+ |..+|+...+..- .+...|.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~ 172 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYV 172 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 44667899999999999999999999999987 456543 68888888887777 8889998887642 2344454
Q ss_pred HHHHHHH-hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC-Ccc--ChhhHHHHH
Q 040801 162 TLINMYS-SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-FWS--HVELKTTLM 237 (323)
Q Consensus 162 ~li~~~~-~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li 237 (323)
....... ..| +.++|.++|++..... .-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++
T Consensus 173 ~~a~~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 173 TAALMEYYCSK---DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHTSC---CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3333322 246 7799999999987753 2367889999999999999999999999999873 565 366899999
Q ss_pred HHHHhcCCHHHHHHHHHhccCC
Q 040801 238 DAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..+.+.|+.++|..+++++.+.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 42
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.84 E-value=7.1e-07 Score=82.75 Aligned_cols=158 Identities=12% Similarity=-0.073 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
|..+-..+...|++++|.+.|++..+. .|+..++..+-..+...|+ |...++...+.. ..+..+|..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 445556677777888888888877663 4556677777777777777 777777776654 2346677778888888
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
.| ++++|.+.|++..... ..+..+|..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 323 ~~---~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 323 LQ---DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp TT---CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred cC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 87 6688888888877654 2345677778888888888888888888887663 33456777788888888888888
Q ss_pred HHHHHhccC
Q 040801 250 WDLFVKMLF 258 (323)
Q Consensus 250 ~~~~~~m~~ 258 (323)
...+++..+
T Consensus 398 ~~~~~~a~~ 406 (537)
T 3fp2_A 398 IKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.80 E-value=8e-07 Score=70.35 Aligned_cols=164 Identities=13% Similarity=-0.048 Sum_probs=133.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLIN 165 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~ 165 (323)
+...|..+=..|.+.|++++|.+.|++..+.. +-+..++..+-..+.+.|+ +...+....+... -+...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 56678888899999999999999999987642 2245677777778888887 7777777766552 34566777777
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 245 (323)
.+...+ +++.+.+.+.+..... .-+...+..+-..+.+.|++++|...+++..+.. +-+...|..+-.+|.+.|+
T Consensus 82 ~~~~~~---~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFMID---EKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcC---CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 888888 7799999999887754 3467788888999999999999999999998864 3357789999999999999
Q ss_pred HHHHHHHHHhccCC
Q 040801 246 VSRAWDLFVKMLFP 259 (323)
Q Consensus 246 ~~~a~~~~~~m~~~ 259 (323)
.++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998765
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.79 E-value=5e-07 Score=83.80 Aligned_cols=214 Identities=10% Similarity=-0.052 Sum_probs=157.4
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC-------ccch----hHHHhcccCC---CCChhhHHHHHHHHHhCCC
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP-------CADY----HVRLVFSQIS---NPTIYTCNSIVRGYTNKNL 105 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-------y~~~----~a~~lf~~m~---~~~~~~~~~li~~~~~~g~ 105 (323)
+..+-..+...|+++.|...++...+..-.+.. |... .|.+.|.+.. +.+...|..+-..+...|+
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 445556777789999999999999887533222 2222 7777777654 4567788888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHH
Q 040801 106 HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKI 182 (323)
Q Consensus 106 ~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~ 182 (323)
+++|.+.|++..+.. +-+..++..+-..+...|+ |...++...+.. ..+...+..+-..|...| ++++|.+.
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~ 400 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG---DFDTAIKQ 400 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC---CHHHHHHH
Confidence 999999999887642 2245677777788877777 888888887764 334667888888888888 66899999
Q ss_pred HHHHHHcC-----CCCChHHHHHHHHHHhcc----------CChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 183 FYRMEIEN-----VKPNAVTLVNVLTARARA----------RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 183 ~~~m~~~g-----~~p~~~t~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
|++..... .......+......+... |++++|...++.+.+.. +.+...+..+...|.+.|+.+
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 98876532 111222344445566666 89999999999988763 235677888889999999999
Q ss_pred HHHHHHHhccCC
Q 040801 248 RAWDLFVKMLFP 259 (323)
Q Consensus 248 ~a~~~~~~m~~~ 259 (323)
+|.+.|++..+.
T Consensus 480 ~A~~~~~~al~~ 491 (537)
T 3fp2_A 480 EAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.79 E-value=4.1e-07 Score=76.51 Aligned_cols=189 Identities=10% Similarity=-0.091 Sum_probs=149.1
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcc
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF 126 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 126 (323)
....++++.|...++++.+..... ++.+...|..+-..+...|++++|.+.|++..+.. +.+..
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPE 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred cCccchHHHHHHHHHHHHhccccc---------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHH
Confidence 445578899999999888763200 02246778899999999999999999999998752 23567
Q ss_pred cHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 040801 127 MFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203 (323)
Q Consensus 127 ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 203 (323)
+|..+-..+...|+ |.+.++...+.. ..+..++..+...|.+.| ++++|.+.|++.... .|+.......+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 152 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGG---RDKLAQDDLLAFYQD--DPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhc---cHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 88888888888888 999999988764 235788999999999999 779999999999874 466656666666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+...|+.++|...++...+.. +++...+ .+...+...++.++|...+++..+.
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 7778899999999998887753 3344444 4778888999999999999998876
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.75 E-value=8.9e-07 Score=81.65 Aligned_cols=193 Identities=11% Similarity=-0.004 Sum_probs=133.5
Q ss_pred hhhhhHHHhhcCCCc-hHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTM-RELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 39 ~~~~li~~~~~~~~~-~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
.+..+-..+...|++ +.|...++...+.. +.+...|..+-..|.+.|++++|.+.|++..
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555556666 66666666666553 3456777888888888888888888888877
Q ss_pred HCCCCCCcccHHHHHHHhcch---------hh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc--------CCCCChH
Q 040801 118 VQGLIPDRFMFPSLFKSCADI---------YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC--------WCLDQPD 177 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~---------~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~~~ 177 (323)
+. .|+...+..+-..+... |+ |.+.++...+.. .-+...|..+-.+|... | +++
T Consensus 165 ~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g---~~~ 238 (474)
T 4abn_A 165 TH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK---ISQ 238 (474)
T ss_dssp TT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH---HHH
T ss_pred hh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc---hHH
Confidence 64 36667777777777777 66 777777776654 22466777777777776 6 567
Q ss_pred HHHHHHHHHHHcCCC--CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 178 EAIKIFYRMEIENVK--PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+|++.|++.....-. -+...|..+-..+...|++++|...|++..+.. +-+...+..+-..+...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888877764310 366777778888888888888888888877653 22355677777778888888888776665
Q ss_pred cc
Q 040801 256 ML 257 (323)
Q Consensus 256 m~ 257 (323)
+.
T Consensus 318 ~~ 319 (474)
T 4abn_A 318 TK 319 (474)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.73 E-value=1.5e-07 Score=79.33 Aligned_cols=196 Identities=12% Similarity=-0.044 Sum_probs=136.1
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC-
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ------GL- 121 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~- 121 (323)
..|+++.|...+++..+.-- ++...-.+.....|..+-..|...|++++|.+.|++..+. +-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLE-----------KTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHH-----------HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34566677766666554310 1111111234567888999999999999999999988653 11
Q ss_pred CCCcccHHHHHHHhcchhh---HHHHHHHHHHc------CCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc--
Q 040801 122 IPDRFMFPSLFKSCADIYV---EKQLHSQAIKF------GLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-- 189 (323)
Q Consensus 122 ~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~-- 189 (323)
.....++..+-..+...|+ |...++...+. .-.| ...++..+-..|...| ++++|.+.|++....
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG---KAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 2234677778888888888 77777776654 1123 4677888999999999 679999999988764
Q ss_pred ----CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------------------
Q 040801 190 ----NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESG--------------------------------------- 225 (323)
Q Consensus 190 ----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------------------------------- 225 (323)
+-.| ...++..+-..+...|++++|...+++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1123 35688888999999999999999999987531
Q ss_pred ---------CccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 226 ---------FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 226 ---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.......+..+...|.+.|++++|...+++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111234566777777777888888777776543
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.70 E-value=1.3e-07 Score=87.19 Aligned_cols=217 Identities=7% Similarity=-0.119 Sum_probs=163.7
Q ss_pred hHHHhcccCC---CCChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHH
Q 040801 77 HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLH-HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAI 149 (323)
Q Consensus 77 ~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~ 149 (323)
.+.+.+++.. +.+...|..+=..|...|++ ++|.+.|++..+.. +-+...|..+-..+.+.|+ |.+.++...
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445554433 45778888888999999999 99999999987642 2246788888888888888 888888887
Q ss_pred HcCCCCchHHHHHHHHHHHhc---------CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc--------CChH
Q 040801 150 KFGLASDSFLHNTLINMYSSC---------WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA--------RDLR 212 (323)
Q Consensus 150 ~~g~~~~~~~~~~li~~~~~~---------g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------~~~~ 212 (323)
+.. |+...+..+-..|... | ++++|++.|++..+.. .-+...|..+-.++... |+++
T Consensus 165 ~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 165 THC--KNKVSLQNLSMVLRQLQTDSGDEHSR---HVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp TTC--CCHHHHHHHHHHHTTCCCSCHHHHHH---HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhC--CCHHHHHHHHHHHHHhccCChhhhhh---hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 764 7778899999999988 8 6799999999998764 33678899999999988 9999
Q ss_pred HHHHHHHHHHHhCCc--cChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh-HHHhhhccCCCCCcchhhhhhh
Q 040801 213 TVKRVHKCVDESGFW--SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW-AMSATVGPQGLVGRHSTAHQIS 288 (323)
Q Consensus 213 ~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~~l~ 288 (323)
+|...+++..+..-. -+...|..+-.+|.+.|++++|.+.|++..+. +..+..| .....+ ...++.++|....
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~---~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL---EFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 999999999886311 37888999999999999999999999998654 3333333 233333 3345667776666
Q ss_pred CCCCchhHHHHHHHH
Q 040801 289 GPCPKKAHKLFFFSM 303 (323)
Q Consensus 289 ~~~~~~~~~~~~~~M 303 (323)
+....+....+...+
T Consensus 316 ~~~~~~~l~~~~~~l 330 (474)
T 4abn_A 316 GKTKPKKLQSMLGSL 330 (474)
T ss_dssp TTCCHHHHHHHHHTC
T ss_pred ccccCccHHHHHHhc
Confidence 655555444444443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.69 E-value=1.9e-06 Score=72.42 Aligned_cols=191 Identities=10% Similarity=-0.121 Sum_probs=147.2
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG 120 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 120 (323)
...-..+...|+++.|...++...+.. +.+...|..+-..|...|++++|.+.|++..+.+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 344566778899999999999998764 3456688889999999999999999999998844
Q ss_pred CCCCccc----HHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 121 LIPDRFM----FPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 121 ~~p~~~t----y~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
++... |..+-..+...|+ |.+.++...+.. ..+..+|..+-..|...| ++++|.+.|++..... ..
T Consensus 68 --~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~~ 140 (272)
T 3u4t_A 68 --NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPT-TT 140 (272)
T ss_dssp --CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSS-CC
T ss_pred --CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcC-CC
Confidence 33333 6777777887777 888888888765 235678999999999999 7799999999887652 33
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC---HHHHHHHHHhccC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF---VSRAWDLFVKMLF 258 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 258 (323)
+...|..+-..+...+++++|...++.+.+.. +.+...+..+...+...|+ .++|...+++..+
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 45566666525555669999999999998863 2236677778888888888 7778877777654
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.2e-07 Score=81.28 Aligned_cols=167 Identities=17% Similarity=0.053 Sum_probs=130.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCcccHHHHHHHhcchhh---HHHHHHHHHHc------C
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ-------GLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF------G 152 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~------g 152 (323)
+...|..+-..+...|++++|.++|++..+. .......++..+-..+...|+ |...++...+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998762 223344667777777777777 77777777654 2
Q ss_pred CCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc------CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 153 LAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE------NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 153 ~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
-.| ...++..+...|...| ++++|.+.|++.... +-.| ....+..+-..+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 223 4677889999999999 779999999988764 2223 4567888889999999999999999999764
Q ss_pred ------CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 225 ------GFWS-HVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 225 ------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+-.| ...++..+...|.+.|++++|.+.+++..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2223 355788899999999999999999998874
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.68 E-value=1e-05 Score=69.92 Aligned_cols=197 Identities=10% Similarity=0.001 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHH-------hCCCh-------HHHHHHHHHHHHC
Q 040801 54 RELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYT-------NKNLH-------HEAFLFYHEMIVQ 119 (323)
Q Consensus 54 ~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~ 119 (323)
+.|..+|++..+.. +.+...|..+...+. +.|++ ++|.++|++-.+.
T Consensus 33 ~~a~~~~~~al~~~-------------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc-------------------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 56677777777653 556777887777765 45886 9999999998874
Q ss_pred CCCCCc-ccHHHHHHHhcchhh---HHHHHHHHHHcCCCCch-H-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 120 GLIPDR-FMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS-F-LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 120 g~~p~~-~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~-~-~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
+.|+. ..|..+...+.+.|+ |.++|+...+. .|+. . +|..+...+.+.| ++++|.++|++....+ .+
T Consensus 94 -~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-p~ 166 (308)
T 2ond_A 94 -LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDA-RT 166 (308)
T ss_dssp -TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHH---CHHHHHHHHHHHHTST-TC
T ss_pred -hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-CC
Confidence 34544 477788877777777 99999998874 4543 3 8999999999999 6699999999988754 23
Q ss_pred ChHHHHHHHHHHh-ccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCC-Cc----hhhh-
Q 040801 194 NAVTLVNVLTARA-RARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW-NN----YGQW- 266 (323)
Q Consensus 194 ~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~----~~~~- 266 (323)
+...|........ ..|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..+.. .+ ...|
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4455544433322 3699999999999998752 2357889999999999999999999999998742 23 3345
Q ss_pred HHHhhhccCCC
Q 040801 267 AMSATVGPQGL 277 (323)
Q Consensus 267 ~~~~~~~~~~~ 277 (323)
.+.......|+
T Consensus 246 ~~~~~~~~~g~ 256 (308)
T 2ond_A 246 RFLAFESNIGD 256 (308)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHcCC
Confidence 45555555443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=5.6e-06 Score=69.91 Aligned_cols=183 Identities=11% Similarity=-0.059 Sum_probs=141.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcc----hhh---HHHHHHHHHHcCCCCchHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCAD----IYV---EKQLHSQAIKFGLASDSFLHN 161 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~~~---a~~~~~~m~~~g~~~~~~~~~ 161 (323)
+...+..+=..|...|++++|.+.|++..+.+ +..++..+-..+.. .++ |...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667778888999999999999999988733 34556666666665 565 889999988876 677888
Q ss_pred HHHHHHHh----cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhH
Q 040801 162 TLINMYSS----CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELK 233 (323)
Q Consensus 162 ~li~~~~~----~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~ 233 (323)
.+-..|.. .+ ++++|++.|++....+ +...+..+-..+.. .++.++|...+++..+.+ +...+
T Consensus 79 ~lg~~~~~g~~~~~---~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQ---NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHTSSSCC---CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHhCCCCccc---CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 88888888 77 7799999999998865 77888888888888 999999999999999876 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhccCCCCchhhh-HHHhhhcc-CCCCCcchhhhhh
Q 040801 234 TTLMDAYCK----CKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGP-QGLVGRHSTAHQI 287 (323)
Q Consensus 234 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~-~~~~~~~~~a~~l 287 (323)
..+-..|.+ .++.++|...|++..+.+. +..+ .+...+.. .+..++.++|...
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLKD-SPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 788888888 9999999999999887653 3333 33333322 2335666666443
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.64 E-value=5.8e-06 Score=65.28 Aligned_cols=163 Identities=12% Similarity=-0.042 Sum_probs=130.2
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
...|..+=..+.+.|++++|...|+...+.. +.+...|..+-..|.+.|++++|.+.+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------------------PNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456677778888999999999999998875 557788999999999999999999999998
Q ss_pred HHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 117 IVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 117 ~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
..... -+...+..+-..+...++ +...+....+.. .-+...+..+-..|.+.| ++++|++.|++..+.. +-
T Consensus 66 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~l~~~-p~ 139 (184)
T 3vtx_A 66 VVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMG---EHDKAIEAYEKTISIK-PG 139 (184)
T ss_dssp HHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TT
T ss_pred HhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhC---CchhHHHHHHHHHHhc-ch
Confidence 76422 233444444455555555 777777776654 335778888999999999 7799999999988754 34
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+..+|..+-..+.+.|+.++|...|++..+.
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6788999999999999999999999998875
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.63 E-value=1.6e-06 Score=67.95 Aligned_cols=161 Identities=9% Similarity=-0.073 Sum_probs=128.5
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.+..+...+...|+++.|...++.+.+.. +.+...|..+...+...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 70 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-------------------AFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455556666777777777776655432 45677889999999999999999999999876
Q ss_pred CCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh
Q 040801 119 QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195 (323)
Q Consensus 119 ~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~ 195 (323)
.. +.+...+..+...+...|+ |.+.++...+.. ..+...+..+...|...| ++++|.+.+++..... ..+.
T Consensus 71 ~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~~~~ 144 (186)
T 3as5_A 71 DA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLG---RFDEAIDSFKIALGLR-PNEG 144 (186)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCH
T ss_pred cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcC-ccch
Confidence 52 3356677777778887777 888888887764 346778889999999999 7799999999988765 3467
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.++..+...+...|+.++|...++.+.+.
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88999999999999999999999998765
No 55
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.62 E-value=2.4e-06 Score=62.91 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
.|..+...+...|++++|.++|+++.+.. | .+...+..+...+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-------------------------------~~~~~~~~~a~~~~~~~ 49 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------------------------RSAEAWYNLGNAYYKQG 49 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-------------------------------TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--C-------------------------------cchhHHHHHHHHHHHhc
Confidence 46677778888888888888888776531 1 12334555566666666
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHH
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
++++|.+.|+++...+ ..+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|+.++|..
T Consensus 50 ---~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 50 ---DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp ---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHH
Confidence 5577777777776544 3345666677777777777777777777776653 2245666777777777777777777
Q ss_pred HHHhccC
Q 040801 252 LFVKMLF 258 (323)
Q Consensus 252 ~~~~m~~ 258 (323)
.++++.+
T Consensus 125 ~~~~~~~ 131 (136)
T 2fo7_A 125 YYQKALE 131 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776643
No 56
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.58 E-value=4.1e-06 Score=61.65 Aligned_cols=123 Identities=19% Similarity=0.045 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
..|..+...|...| ++++|.++|+++...+ ..+...+..+...+...|++++|...++++.+.+ +.+...+..+.
T Consensus 2 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 76 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG---DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHHT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHcC---cHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 35778888999999 7799999999998765 3467888889999999999999999999998764 33567888999
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC-Cchhhh-HHHhhhccCCCCCcchhhhhhh
Q 040801 238 DAYCKCKFVSRAWDLFVKMLFPW-NNYGQW-AMSATVGPQGLVGRHSTAHQIS 288 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~-~~~~~~~~~~~~~~~~~a~~l~ 288 (323)
..|.+.|++++|...++++.+.. ..+..+ .+...+ ...|+.++|...+
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY---YKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---HTTTCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HHHccHHHHHHHH
Confidence 99999999999999999987642 233333 333333 3456677765544
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.53 E-value=2.7e-05 Score=69.60 Aligned_cols=190 Identities=6% Similarity=-0.056 Sum_probs=154.1
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCC-hHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNL-HHEAFLFYHEMI 117 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 117 (323)
.+..+-..+.+.|+++.|...++...+.. +.+...|+.+-..+.+.|+ +++|++.|++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-------------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-------------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 35556667777889999999999998874 5577889999999999997 999999999998
Q ss_pred HCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 118 VQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 118 ~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
+. .| +...|..+-..+...|+ |...++...+.. .-+...|..+-.++.+.| ++++|++.|++...... -
T Consensus 160 ~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g---~~~eAl~~~~~al~l~P-~ 232 (382)
T 2h6f_A 160 EE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDV-R 232 (382)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCT-T
T ss_pred HH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCC-C
Confidence 74 34 45677777777777777 999999998865 236788999999999999 45899999999998653 3
Q ss_pred ChHHHHHHHHHHhc-cCChHHH-----HHHHHHHHHhCCcc-ChhhHHHHHHHHHhcC--CHHHHHHHHHhc
Q 040801 194 NAVTLVNVLTARAR-ARDLRTV-----KRVHKCVDESGFWS-HVELKTTLMDAYCKCK--FVSRAWDLFVKM 256 (323)
Q Consensus 194 ~~~t~~~li~~~~~-~~~~~~a-----~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m 256 (323)
+...|+.+-..+.. .|..++| ...+++..+. .| +...|..+-..|.+.| +.++|.+.++++
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77899999899988 6665777 4777777765 34 4678888888899988 699999999998
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.51 E-value=1.8e-05 Score=73.67 Aligned_cols=166 Identities=8% Similarity=0.027 Sum_probs=127.0
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHhcchhh---HHHHHHHHHHcCC-CCchHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR--FMFPSLFKSCADIYV---EKQLHSQAIKFGL-ASDSFLH 160 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~ll~~~~~~~~---a~~~~~~m~~~g~-~~~~~~~ 160 (323)
+.+...|..+...+.+.|++++|.++|++..+ +.|+. ..|..+...+.+.|+ |.++++...+..- .+.....
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 44678899999999999999999999999987 45654 367777777777777 8888888876531 1112222
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CccC--hhhHHHHH
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-FWSH--VELKTTLM 237 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li 237 (323)
..++. +...| +.++|.++|++..... .-+...|..++..+.+.|+.+.|..+|++..+.+ ..|+ ...|...+
T Consensus 396 ~a~~~-~~~~~---~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 396 AALME-YYCSK---DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHH-HHHTC---CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHH-HHHcC---ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 22332 33567 6799999999887643 2357889999999999999999999999998863 2332 44788889
Q ss_pred HHHHhcCCHHHHHHHHHhccCC
Q 040801 238 DAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
....+.|+.+.+..+++++.+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9888999999999999988764
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.51 E-value=7.3e-06 Score=68.76 Aligned_cols=163 Identities=10% Similarity=-0.070 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc--hHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD--SFLHNTLIN 165 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~--~~~~~~li~ 165 (323)
..+-..-..+...|++++|.+.|++..+.. +-+...+..+-..+...|+ |.+.++...+..-.++ ...|..+-.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556678899999999999999998752 2244588888888888888 8888988887443332 334888999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF 245 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 245 (323)
.|...| ++++|.+.|++..... +.+..+|..+-..+...|++++|...+++..+.. +-+...|..+-..+...++
T Consensus 83 ~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 83 ILMKKG---QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcc---cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 999999 7799999999998754 3366889999999999999999999999987762 2345666666624444569
Q ss_pred HHHHHHHHHhccCC
Q 040801 246 VSRAWDLFVKMLFP 259 (323)
Q Consensus 246 ~~~a~~~~~~m~~~ 259 (323)
+++|.+.|++..+.
T Consensus 158 ~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 158 YVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.44 E-value=2.6e-05 Score=69.66 Aligned_cols=202 Identities=12% Similarity=0.016 Sum_probs=154.7
Q ss_pred hhhhhhHHHhhcCCC-chHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCST-MRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 38 ~~~~~li~~~~~~~~-~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
..|+.+-..+...|+ ++.|...++...+.. +.+...|+.+=..+.+.|++++|+..|++.
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345566667777786 999999999888875 567888999999999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCCCChHHH-----HHHHHHHH
Q 040801 117 IVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS-CWCLDQPDEA-----IKIFYRME 187 (323)
Q Consensus 117 ~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~~~~a-----~~~~~~m~ 187 (323)
.+.. +-+...|..+-.++.+.|+ |...++.+.+..- -+...|+.+-..|.+ .|. .++| ++.|++..
T Consensus 193 l~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~---~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 193 LNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY---NDRAVLEREVQYTLEMI 267 (382)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS---CSHHHHHHHHHHHHHHH
T ss_pred HHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc---chHHHHHHHHHHHHHHH
Confidence 8742 2355677777777777777 9999999988762 357889999999998 553 2566 57888877
Q ss_pred HcCCCCChHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC---------CHHHHHHHHHhc
Q 040801 188 IENVKPNAVTLVNVLTARARAR--DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK---------FVSRAWDLFVKM 256 (323)
Q Consensus 188 ~~g~~p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m 256 (323)
... .-+...|+.+-..+...| +.++|...+.++ +. -..+...+..+.+.|.+.| .+++|.++++++
T Consensus 268 ~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 268 KLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 644 235678888888888888 688998888887 22 2335678889999999874 369999999999
Q ss_pred -cCC-CCchhhh
Q 040801 257 -LFP-WNNYGQW 266 (323)
Q Consensus 257 -~~~-~~~~~~~ 266 (323)
.+. +.....|
T Consensus 345 ~~~~DP~r~~~w 356 (382)
T 2h6f_A 345 AKEKDTIRKEYW 356 (382)
T ss_dssp HHTTCGGGHHHH
T ss_pred HHHhCchhHHHH
Confidence 443 4555666
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.42 E-value=9.6e-06 Score=78.45 Aligned_cols=160 Identities=10% Similarity=-0.016 Sum_probs=135.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHhcchhh---HHHHHHHHHHcCCCC-chHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS-DSFLHNTL 163 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~-~~~~~~~l 163 (323)
+...|+.|=..|.+.|++++|++.|++-.+. .|+ ..+|..+-..+.+.|+ |.+.++...+.. | +...|+.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4567899999999999999999999998764 454 5678888888888888 888898888764 4 47789999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHh
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCK 242 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 242 (323)
-..|.+.| ++++|++.|++..+.. .-+...|+.+-..+...|++++|...+++..+. .| +...|..|...|..
T Consensus 84 g~~l~~~g---~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 84 GNTLKEMQ---DVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHh
Confidence 99999999 6799999999988754 235689999999999999999999999999886 35 47789999999999
Q ss_pred cCCHHHHHHHHHhccC
Q 040801 243 CKFVSRAWDLFVKMLF 258 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~ 258 (323)
.|++++|.+.+++..+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999887653
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.40 E-value=2.3e-05 Score=72.95 Aligned_cols=185 Identities=10% Similarity=-0.002 Sum_probs=135.5
Q ss_pred CCChhhHHHHHHHHHh-------CCChH-------HHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTN-------KNLHH-------EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAI 149 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~ 149 (323)
+.+...|..+...+.+ .|+++ +|.++|++-.+.-.+-+...|..+...+.+.|+ |..+++...
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4567788888888775 79987 899999988763233346677777777777777 999999998
Q ss_pred HcCCCCc--hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-HhccCChHHHHHHHHHHHHhCC
Q 040801 150 KFGLASD--SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA-RARARDLRTVKRVHKCVDESGF 226 (323)
Q Consensus 150 ~~g~~~~--~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~~~~~~a~~~~~~m~~~g~ 226 (323)
+. .|+ ...|..+...+.+.| +.++|.++|++-.... ..+...|...... +...|+.++|..+|+...+..
T Consensus 349 ~~--~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 349 AI--EDIDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HS--SSSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred Cc--cccCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 85 454 358999999999988 6699999999987643 1223333332222 335899999999999998753
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchh----hh-HHHhhhccCCCC
Q 040801 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYG----QW-AMSATVGPQGLV 278 (323)
Q Consensus 227 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~----~~-~~~~~~~~~~~~ 278 (323)
+-+...|..+++.+.+.|+.++|..+|++.... +.+|. .| .+......+|+.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 235788999999999999999999999998765 23343 56 556665555543
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.37 E-value=2.2e-05 Score=64.26 Aligned_cols=152 Identities=13% Similarity=-0.067 Sum_probs=114.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
.|...|...=..+.+.|++++|.+.|++..+..-.++...+..+-..+...|+ |.+.++...+.. .-+...|..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35567777788899999999999999998876443666667667777777777 888888877654 22567788888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC---hhhHH
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNA-------VTLVNVLTARARARDLRTVKRVHKCVDESGFWSH---VELKT 234 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~ 234 (323)
..|...| ++++|++.|++..... +-+. ..|..+=..+...|++++|...++...+. .|+ ...|.
T Consensus 84 ~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 157 (228)
T 4i17_A 84 AAYRDMK---NNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALY 157 (228)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHH
T ss_pred HHHHHcc---cHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHH
Confidence 8999988 6799999998887743 1233 45666667778889999999999988765 444 45667
Q ss_pred HHHHHHHhcCCH
Q 040801 235 TLMDAYCKCKFV 246 (323)
Q Consensus 235 ~li~~~~~~g~~ 246 (323)
.+-..|...|+.
T Consensus 158 ~l~~~~~~~~~~ 169 (228)
T 4i17_A 158 SLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776665
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.30 E-value=2.3e-06 Score=71.90 Aligned_cols=156 Identities=15% Similarity=-0.003 Sum_probs=116.2
Q ss_pred HHhCCChHHHHHHHHHHHH-------CCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHc------CCCC-chHHHHH
Q 040801 100 YTNKNLHHEAFLFYHEMIV-------QGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKF------GLAS-DSFLHNT 162 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~------g~~~-~~~~~~~ 162 (323)
....|++++|.++|++-.+ ...+....++..+-..+...|+ |...++...+. +-.| ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3456777777777766544 1222345667777777777777 88888777654 3233 4667899
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHc------CC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCcc-
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIE------NV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDES------GFWS- 228 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p- 228 (323)
+-..|...| ++++|.+.|++.... .- .....++..+-..+...|++++|...++++.+. +-.|
T Consensus 91 l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 91 LAVLYGKRG---KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999 779999999988764 11 234678888999999999999999999999765 1122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 229 HVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
...++..+...|.+.|++++|...+++..+
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788899999999999999999998764
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=3.6e-06 Score=75.29 Aligned_cols=245 Identities=10% Similarity=-0.042 Sum_probs=127.8
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC--------------ccch----hHHHhccc-------CC--CCChhh
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP--------------CADY----HVRLVFSQ-------IS--NPTIYT 92 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~--------------y~~~----~a~~lf~~-------m~--~~~~~~ 92 (323)
+..+-..+...|+++.|...++...+.+ |+. |... .|.+.|++ .. ......
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445556778899999999999999874 222 1111 33333332 22 123345
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCcccHHHHHHHhcchhh--------------------HHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQ----GLI-PDRFMFPSLFKSCADIYV--------------------EKQLHSQ 147 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~ty~~ll~~~~~~~~--------------------a~~~~~~ 147 (323)
|..+-..|...|++++|.+.|++..+. +-. ....++..+-..+...|+ |.+.++.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 666666677777777777777665432 100 112233333333333322 4444444
Q ss_pred HHHc----CCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-CCC----hHHHHHHHHHHhccCChHHHHHH
Q 040801 148 AIKF----GLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV-KPN----AVTLVNVLTARARARDLRTVKRV 217 (323)
Q Consensus 148 m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~ 217 (323)
..+. +-.+ ...++..+-..|...| ++++|.+.|++.....- .++ ..++..+...+...|++++|...
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLG---DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3322 1111 2235666666666666 55677777766654210 011 12566666667777777777777
Q ss_pred HHHHHHhCCc-----cChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCC----chhhh-HHHhhhccCCCCCcchhhhhh
Q 040801 218 HKCVDESGFW-----SHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN----NYGQW-AMSATVGPQGLVGRHSTAHQI 287 (323)
Q Consensus 218 ~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~-~~~~~~~~~~~~~~~~~a~~l 287 (323)
+++..+..-. ....++..+...|.+.|++++|...+++..+... ..... .+...-..+...|+.++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7666542111 1134566666677777777777777777665411 11111 333333444445555555444
Q ss_pred hC
Q 040801 288 SG 289 (323)
Q Consensus 288 ~~ 289 (323)
+.
T Consensus 366 ~~ 367 (411)
T 4a1s_A 366 AE 367 (411)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 66
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.24 E-value=5.7e-05 Score=64.98 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=64.0
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 040801 109 AFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGL-ASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184 (323)
Q Consensus 109 A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~ 184 (323)
|...|++..+.+ .++..++..+-.++...|+ |.+++....+.|- .-+...+..++..|.+.| +.+.|.+.++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~l~ 160 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN---NVSTASTIFD 160 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 444555444433 2333333344444444444 4444444333331 123444555555555555 3455666665
Q ss_pred HHHHcCCCC-----ChHHHHHHHHHHh--ccC--ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 185 RMEIENVKP-----NAVTLVNVLTARA--RAR--DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 185 ~m~~~g~~p-----~~~t~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
+|.+. .| +..+...+..+++ ..| +...|..+|+++.+. .|+..+-..|+.++.+.|++++|++.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55442 34 2344444444422 122 555555555555433 23322223333355555666666665554
Q ss_pred cc
Q 040801 256 ML 257 (323)
Q Consensus 256 m~ 257 (323)
+.
T Consensus 237 l~ 238 (310)
T 3mv2_B 237 LL 238 (310)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.20 E-value=7.6e-05 Score=72.18 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=135.3
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
...++.|-..+.+.|++++|.+.|++..+.. +.+...|+.+=..|.+.|++++|++.|++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-------------------PEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4467788889999999999999999998874 456788999999999999999999999998
Q ss_pred HHCCCCCC-cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC
Q 040801 117 IVQGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK 192 (323)
Q Consensus 117 ~~~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~ 192 (323)
.+. .|+ ...|..+-..+.+.|+ |.+.++...+.. .-+...|+.+-..|.+.| ++++|++.|++..+.. .
T Consensus 70 l~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~-P 142 (723)
T 4gyw_A 70 IRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSG---NIPEAIASYRTALKLK-P 142 (723)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-S
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C
Confidence 763 454 5678888888888888 888888887764 224778999999999999 6799999999988754 2
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
-+...|..+...+...|++++|.+.++++.+
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 2568899999999999999999999888764
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.18 E-value=0.00034 Score=64.35 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=130.4
Q ss_pred CCCchHHHHHHHHHHHhcCCCCC------ccc----h----hHHHhcccCC-CCChhhHHHHHHHHHh----CCChHHHH
Q 040801 50 CSTMRELKQIHAQMLRTSLFFDP------CAD----Y----HVRLVFSQIS-NPTIYTCNSIVRGYTN----KNLHHEAF 110 (323)
Q Consensus 50 ~~~~~~a~~i~~~m~~~~~~~~~------y~~----~----~a~~lf~~m~-~~~~~~~~~li~~~~~----~g~~~~A~ 110 (323)
.++++.|...|+...+.|...-. |.. . .|.+.|.+.. .-+...+..|=..|.. .+++++|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 67888999999888876532111 322 1 6777776544 4466666667677777 77888999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcc----hhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCCCChHHH
Q 040801 111 LFYHEMIVQGLIPDRFMFPSLFKSCAD----IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSS----CWCLDQPDEA 179 (323)
Q Consensus 111 ~~~~~m~~~g~~p~~~ty~~ll~~~~~----~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~~~~a 179 (323)
+.|++-.+.| +...+..|-..|.. .++ |.+.++...+.| +...+..|-..|.. .+ +.++|
T Consensus 136 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~---~~~~A 206 (490)
T 2xm6_A 136 KWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER---NDAIS 206 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC---CHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc---CHHHH
Confidence 8888887765 33444444444433 233 777777777765 46666667667766 44 67888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh----cCCHHHHHH
Q 040801 180 IKIFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK----CKFVSRAWD 251 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 251 (323)
.+.|++-.+.| +...+..+-..+.. .++.++|...++...+.| +...+..|-..|.. .++.++|.+
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 88888777654 44556666666654 678888888888877665 34455555566666 778888888
Q ss_pred HHHhccCCC
Q 040801 252 LFVKMLFPW 260 (323)
Q Consensus 252 ~~~~m~~~~ 260 (323)
.|++..+.+
T Consensus 281 ~~~~a~~~~ 289 (490)
T 2xm6_A 281 WYRKSAEQG 289 (490)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHcC
Confidence 888777664
No 69
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.17 E-value=0.00018 Score=66.19 Aligned_cols=198 Identities=13% Similarity=0.009 Sum_probs=111.6
Q ss_pred CCCchHHHHHHHHHHHhcCCCCC-------ccc------h--hHHHhcccCC-CCChhhHHHHHHHHHh----CCChHHH
Q 040801 50 CSTMRELKQIHAQMLRTSLFFDP-------CAD------Y--HVRLVFSQIS-NPTIYTCNSIVRGYTN----KNLHHEA 109 (323)
Q Consensus 50 ~~~~~~a~~i~~~m~~~~~~~~~-------y~~------~--~a~~lf~~m~-~~~~~~~~~li~~~~~----~g~~~~A 109 (323)
.++++.|...|+...+.|. +.. |.. . .|.+.|++.. .-+...+..|=..|.. .+++++|
T Consensus 92 ~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGL-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 5677888888877776652 111 222 1 5666665543 3455556666666665 6777788
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcc----hhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCCCChHHHHH
Q 040801 110 FLFYHEMIVQGLIPDRFMFPSLFKSCAD----IYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC-WCLDQPDEAIK 181 (323)
Q Consensus 110 ~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~~~~a~~ 181 (323)
.+.|++..+.| +...+..+-..+.. .++ |.++++...+.| +...+..|-..|... |...+.++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 87777776654 34444444444433 333 666666666654 344555555555541 11125667777
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc-----CCHHHHHHH
Q 040801 182 IFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC-----KFVSRAWDL 252 (323)
Q Consensus 182 ~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~ 252 (323)
+|++..+.| +...+..+-..+.. .++.++|...++...+.| +...+..|-..|... ++.++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 776665543 23344444444444 566666766666666554 334455555555555 666666666
Q ss_pred HHhccCCC
Q 040801 253 FVKMLFPW 260 (323)
Q Consensus 253 ~~~m~~~~ 260 (323)
+++..+.+
T Consensus 319 ~~~a~~~~ 326 (490)
T 2xm6_A 319 YTKSAEQG 326 (490)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 66665543
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.09 E-value=3.3e-05 Score=66.24 Aligned_cols=200 Identities=11% Similarity=-0.035 Sum_probs=95.3
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPT--IYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
...-..+...|+++.|...+++..+..- +. +. ...|..+-..|...|++++|.+.+++..+
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGT--ED---------------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--SC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCc--cc---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344566778999999999999988742 11 00 23455555555556666666655555422
Q ss_pred C----CCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCC-CCc----hHHHHHHHHHHHhcCCCC-----------
Q 040801 119 Q----GLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGL-ASD----SFLHNTLINMYSSCWCLD----------- 174 (323)
Q Consensus 119 ~----g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~----------- 174 (323)
. +-.| ...++..+-..+...|+ |...++...+..- .++ ..++..+-..|...|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 1 1111 12333444444444444 4444444332210 011 224555555555555200
Q ss_pred ------ChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc-c----ChhhHHHHHH
Q 040801 175 ------QPDEAIKIFYRMEIE----NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-S----HVELKTTLMD 238 (323)
Q Consensus 175 ------~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p----~~~~~~~li~ 238 (323)
.+++|.+.+++.... +-.+ ...++..+-..+...|++++|...+++..+..-. + ....+..+..
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 045555555444321 1111 1234555555555556666666555555432100 0 1224555555
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 040801 239 AYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 239 ~~~~~g~~~~a~~~~~~m~ 257 (323)
.|...|++++|...+++..
T Consensus 232 ~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5556666666665555543
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.09 E-value=1.7e-05 Score=70.34 Aligned_cols=95 Identities=13% Similarity=-0.077 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-CC----ChHHHHHHHHHHhccCChHHHHHHHHHHHHhC----Ccc-
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV-KP----NAVTLVNVLTARARARDLRTVKRVHKCVDESG----FWS- 228 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p- 228 (323)
++..+-..|...| ++++|.+.|++.....- .+ ...++..+-..+...|++++|...+++..+.. -.+
T Consensus 189 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 189 AFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHT---BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 4555555555555 44555555555543100 01 12255555555555566666555555554321 000
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 229 HVELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
...++..+-..|.+.|++++|...+++.
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0334455555555556655555555554
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.07 E-value=3.2e-05 Score=68.53 Aligned_cols=198 Identities=11% Similarity=-0.024 Sum_probs=142.6
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCC----hhhHHHHHHHHHhCCChHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPT----IYTCNSIVRGYTNKNLHHEAFLFYH 114 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 114 (323)
.+...-..+...|+++.|...++...+.+- .+ ...|..+-..|...|++++|.+.|+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 71 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-------------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-------------------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444556677888999999999999988742 22 3568888899999999999999998
Q ss_pred HHHHC----CCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCCCC------
Q 040801 115 EMIVQ----GLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS-DSFLHNTLINMYSSCWCLDQ------ 175 (323)
Q Consensus 115 ~m~~~----g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~------ 175 (323)
+.... +-.| ...++..+-..+...|+ |...++...+. +-.+ ...++..+-..|...| +
T Consensus 72 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~ 148 (406)
T 3sf4_A 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG---KSFGCPG 148 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH---HTCC---
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC---Ccccccc
Confidence 86432 2122 13456666666777777 66666665443 2111 2457888888899988 5
Q ss_pred --------------hHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc-cC----hh
Q 040801 176 --------------PDEAIKIFYRMEIE----NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-SH----VE 231 (323)
Q Consensus 176 --------------~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~ 231 (323)
+++|.+.+++.... +-.| ...++..+-..+...|++++|...+++..+..-. ++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 68899888876542 2112 2357888888999999999999999998653111 11 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.+..+...|...|++++|...+++..+
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 788889999999999999999998753
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.07 E-value=0.00057 Score=58.25 Aligned_cols=161 Identities=11% Similarity=-0.038 Sum_probs=116.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCcc----cHHHHHHHhcchhh---HHHHHHHHHHcCCC-Cc----hHHH
Q 040801 94 NSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPDRF----MFPSLFKSCADIYV---EKQLHSQAIKFGLA-SD----SFLH 160 (323)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----ty~~ll~~~~~~~~---a~~~~~~m~~~g~~-~~----~~~~ 160 (323)
...+..+.+.|++++|.+++++..... ..|+.. .|..+...+...++ |...++...+.... ++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334778999999999999999987642 223321 22334445555554 88888888874322 23 3368
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHH----c-CCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccC-
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEI----E-NVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDES----GFWSH- 229 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~----~-g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~- 229 (323)
+.+-..|...| ++++|++.|++... . +..+.. .+|..+-..|.+.|++++|...+++..+. +-.+.
T Consensus 159 ~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 159 NAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999 77999999999874 1 222223 48888999999999999999999988653 22222
Q ss_pred hhhHHHHHHHHHhcCC-HHHHHHHHHhcc
Q 040801 230 VELKTTLMDAYCKCKF-VSRAWDLFVKML 257 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 257 (323)
...|..+-.+|.+.|+ .++|.+.+++..
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5678888889999994 699998888765
No 74
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.06 E-value=0.00014 Score=62.47 Aligned_cols=175 Identities=7% Similarity=-0.050 Sum_probs=125.7
Q ss_pred HHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHhcchhh---HHHHHHHHHH
Q 040801 78 VRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL-IPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150 (323)
Q Consensus 78 a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~ 150 (323)
|.+.|++.. .++..++..+-..+...|++++|++++.+-...|- .-+...+..++..+.+.|+ |.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 35555566777899999999999999998766543 2356778888888999888 9999999987
Q ss_pred cCCCC-----chHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 151 FGLAS-----DSFLHNTLINMYSS--CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 151 ~g~~~-----~~~~~~~li~~~~~--~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
. .| +..+...|..+++. .|. ++.++|+.+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 36 35566666666333 231 1569999999998654 36645555666689999999999999997765
Q ss_pred h-----CC---cc-ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 224 S-----GF---WS-HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 224 ~-----g~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
. .. .| |..+.-.+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 11 23 45666455555555676 889999999875
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.06 E-value=9.9e-05 Score=65.49 Aligned_cols=194 Identities=8% Similarity=-0.091 Sum_probs=97.2
Q ss_pred HhhcCCCchHHHHHHHHHHHhcC-CCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC
Q 040801 46 SLEKCSTMRELKQIHAQMLRTSL-FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIP 123 (323)
Q Consensus 46 ~~~~~~~~~~a~~i~~~m~~~~~-~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 123 (323)
.+...|+++.|...++...+.-- .++. ......|..+=..|...|++++|.+.+++-.+-- -.+
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDR--------------IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCH--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 45567899999999988775421 0111 0022345555555666666666666665543310 001
Q ss_pred C-----cccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-
Q 040801 124 D-----RFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE- 189 (323)
Q Consensus 124 ~-----~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~- 189 (323)
+ ..+++.+-..+...|+ |.+.++...+. +-.+ ...++..+-..|...| ++++|.+.|++....
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS---QYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
Confidence 1 2344444445555554 44444444322 1111 1234555556666666 446666666555441
Q ss_pred ---CC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccChhhHHHHHHHHHhcCC---HHHHHHHHHhc
Q 040801 190 ---NV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWSHVELKTTLMDAYCKCKF---VSRAWDLFVKM 256 (323)
Q Consensus 190 ---g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m 256 (323)
+. .....++..+-..+.+.|+.++|...+++..+. +-......+..+-..|.+.|+ +++|..++++.
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 22 223455666666666666666666666655432 111112224445555556666 55555555555
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.05 E-value=9.7e-05 Score=63.18 Aligned_cols=193 Identities=9% Similarity=-0.088 Sum_probs=121.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-cccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC-chHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIV----QGLIPD-RFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS-DSFL 159 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~-~~~~ 159 (323)
|+-....|...|++++|.+.|.+-.+ .|-.++ ..+|+.+-..+.+.|+ |...++...+. |-.. -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444556666777777777765533 121111 3456666666666655 55555544332 2111 1456
Q ss_pred HHHHHHHHHhc-CCCCChHHHHHHHHHHHHcC--C-CC-C-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh--
Q 040801 160 HNTLINMYSSC-WCLDQPDEAIKIFYRMEIEN--V-KP-N-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE-- 231 (323)
Q Consensus 160 ~~~li~~~~~~-g~~~~~~~a~~~~~~m~~~g--~-~p-~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-- 231 (323)
++.+-..|... | ++++|++.|++..... . .+ . ..+|+.+-..+.+.|++++|...+++..+........
T Consensus 120 ~~~lg~~~~~~lg---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 120 KFELGEILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 88888889886 8 6799999998876521 1 11 1 3578889999999999999999999998864333221
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHhccCC-CCchhhh---H---HHhhhccCCCCCcchhhhhhhC
Q 040801 232 ----LKTTLMDAYCKCKFVSRAWDLFVKMLFP-WNNYGQW---A---MSATVGPQGLVGRHSTAHQISG 289 (323)
Q Consensus 232 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~---~---~~~~~~~~~~~~~~~~a~~l~~ 289 (323)
.|..+..+|...|++++|...|++..+- +...... . +...+ ..++.+++.+|.....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSEHCKEFD 264 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc
Confidence 5677788899999999999999998764 1111111 1 22222 2345677777766554
No 77
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.04 E-value=1.6e-05 Score=68.18 Aligned_cols=204 Identities=10% Similarity=-0.071 Sum_probs=97.6
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+..+...+...|+++.|...++...+..-..+. .......+..+-..|...|++++|.+.+++..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35667777888889999999999887644210000 01112345555555556666666666655543
Q ss_pred HCCC-CCC----cccHHHHHHHhcchhh-----------------------HHHHHHHHHH----cCCCC-chHHHHHHH
Q 040801 118 VQGL-IPD----RFMFPSLFKSCADIYV-----------------------EKQLHSQAIK----FGLAS-DSFLHNTLI 164 (323)
Q Consensus 118 ~~g~-~p~----~~ty~~ll~~~~~~~~-----------------------a~~~~~~m~~----~g~~~-~~~~~~~li 164 (323)
+..- .++ ..++..+-..+...|+ |.+.++...+ .+..+ ...++..+-
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 111 DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2110 011 1133333333332221 3333322221 11111 123455555
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCC----cc-ChhhHH
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIE----NV-KPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF----WS-HVELKT 234 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p-~~~~~~ 234 (323)
..|...| ++++|.+.+++.... +. .....++..+...+...|++++|...+++..+..- .+ ...++.
T Consensus 191 ~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 191 NTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 5555555 445666555554321 11 11234555555556666666666666555543210 00 133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.+...|.+.|++++|...+++..
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555666666666666655543
No 78
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.03 E-value=1.5e-05 Score=71.18 Aligned_cols=217 Identities=12% Similarity=-0.047 Sum_probs=151.0
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhc--C--CCCC----------ccch----hHHHhcccCC---------CCChh
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTS--L--FFDP----------CADY----HVRLVFSQIS---------NPTIY 91 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~--~--~~~~----------y~~~----~a~~lf~~m~---------~~~~~ 91 (323)
.+..+-..+...|+++.|...+++..+.. . .+.. |... .|.+.|.+.. .....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 45666677778899999999999887542 1 1111 1111 4555544432 12345
Q ss_pred hHHHHHHHHHhCCC-----------------hHHHHHHHHHHHHC----CCCC-CcccHHHHHHHhcchhh---HHHHHH
Q 040801 92 TCNSIVRGYTNKNL-----------------HHEAFLFYHEMIVQ----GLIP-DRFMFPSLFKSCADIYV---EKQLHS 146 (323)
Q Consensus 92 ~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~~~---a~~~~~ 146 (323)
.|..+-..|...|+ +++|.+.+++..+. +-.+ ...++..+-..+...|+ |...++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 78888889999999 99999999886432 1111 22466666677777777 777777
Q ss_pred HHHHcCCC-Cc----hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC--CC---CChHHHHHHHHHHhccCChHHHHH
Q 040801 147 QAIKFGLA-SD----SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN--VK---PNAVTLVNVLTARARARDLRTVKR 216 (323)
Q Consensus 147 ~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g--~~---p~~~t~~~li~~~~~~~~~~~a~~ 216 (323)
...+..-. .+ ..++..+-..|...| ++++|.+.|++..... .. ....++..+-..+...|++++|..
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLG---QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76543211 11 347888999999999 7799999998876532 11 125678888899999999999999
Q ss_pred HHHHHHHhC----Cc-cChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 217 VHKCVDESG----FW-SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 217 ~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.+++..+.. -. .....+..+...|.+.|+.++|.+.+++..+
T Consensus 325 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999986531 11 1245788899999999999999999998765
No 79
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.02 E-value=0.00014 Score=57.02 Aligned_cols=58 Identities=3% Similarity=-0.153 Sum_probs=37.0
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.....+.+.|+++.|...++...+.. +.+...|..+-..+.+.|++++|.+.|+...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-------------------QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 33445556666777766666655543 34556677777777777777777777766543
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.02 E-value=0.00028 Score=58.94 Aligned_cols=166 Identities=12% Similarity=0.005 Sum_probs=121.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----cccHHHHHHHhcchhh---HHHHHHHHHHcCC-CC-ch
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLFKSCADIYV---EKQLHSQAIKFGL-AS-DS 157 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~-~~-~~ 157 (323)
+.+...+-.+-..+.+.|++++|.+.|++..+.. |+ ...+..+-.++.+.|+ |...++...+..- .| ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4455666667778889999999999999998753 43 3456666677777777 8898998887631 12 24
Q ss_pred HHHHHHHHHHHh--------cCCCCChHHHHHHHHHHHHcCCCCC-hHHH-----------------HHHHHHHhccCCh
Q 040801 158 FLHNTLINMYSS--------CWCLDQPDEAIKIFYRMEIENVKPN-AVTL-----------------VNVLTARARARDL 211 (323)
Q Consensus 158 ~~~~~li~~~~~--------~g~~~~~~~a~~~~~~m~~~g~~p~-~~t~-----------------~~li~~~~~~~~~ 211 (323)
..+..+-.+|.. .| ++++|.+.|++..... |+ .... ..+-..+.+.|++
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQT---DTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCH---HHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccccccch---hHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 556667777777 77 7799999999998754 32 2333 3456778899999
Q ss_pred HHHHHHHHHHHHhCCcc--ChhhHHHHHHHHHhc----------CCHHHHHHHHHhccCC
Q 040801 212 RTVKRVHKCVDESGFWS--HVELKTTLMDAYCKC----------KFVSRAWDLFVKMLFP 259 (323)
Q Consensus 212 ~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 259 (323)
++|...++.+.+..-.. ....+..+..+|.+. |++++|...+++..+.
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999998763111 234677777788866 8999999999998764
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.01 E-value=0.00014 Score=52.37 Aligned_cols=98 Identities=21% Similarity=0.060 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
...|..+...+...| ++++|.+.|++..... ..+..++..+...+...|++++|..+++++.+.. +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQG---DYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 567888888999999 7799999999998754 3467788899999999999999999999998764 3367788899
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...|.+.|++++|...++++.+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999988654
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.01 E-value=0.00032 Score=59.93 Aligned_cols=200 Identities=10% Similarity=-0.075 Sum_probs=133.6
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
|......+...|+++.|...|....+. +.+...+ ...+|+.+-..|.+.|++++|++.|++-.
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADY---------------QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444555666666666666655443 2222222 24678899999999999999999998865
Q ss_pred HC----CCCC-CcccHHHHHHHhcch-hh---HHHHHHHHHHcCC----CCc-hHHHHHHHHHHHhcCCCCChHHHHHHH
Q 040801 118 VQ----GLIP-DRFMFPSLFKSCADI-YV---EKQLHSQAIKFGL----ASD-SFLHNTLINMYSSCWCLDQPDEAIKIF 183 (323)
Q Consensus 118 ~~----g~~p-~~~ty~~ll~~~~~~-~~---a~~~~~~m~~~g~----~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~ 183 (323)
+- |-.. -..+|..+-..+... |+ |...++...+..- ... ..+++.+-..|.+.| ++++|++.|
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~ 181 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG---QYIEASDIY 181 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence 42 1110 124677777777764 66 7777777665321 111 456888999999999 779999999
Q ss_pred HHHHHcCCCCCh------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh------hhHHHHHHHHH--hcCCHHHH
Q 040801 184 YRMEIENVKPNA------VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV------ELKTTLMDAYC--KCKFVSRA 249 (323)
Q Consensus 184 ~~m~~~g~~p~~------~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~a 249 (323)
++.......... ..|..+-.++...|+.++|...+++..+. .|+. ..+..++.+|. ..+++++|
T Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A 259 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEH 259 (292)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999875433222 15677778888999999999999997653 2321 13455666665 45779999
Q ss_pred HHHHHhccCC
Q 040801 250 WDLFVKMLFP 259 (323)
Q Consensus 250 ~~~~~~m~~~ 259 (323)
...|+++..-
T Consensus 260 ~~~~~~~~~l 269 (292)
T 1qqe_A 260 CKEFDNFMRL 269 (292)
T ss_dssp HHHHTTSSCC
T ss_pred HHHhccCCcc
Confidence 9998887653
No 83
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.00 E-value=0.00022 Score=72.32 Aligned_cols=186 Identities=12% Similarity=-0.023 Sum_probs=115.8
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCC-ccch----hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP-CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~-y~~~----~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
+-..+...|.+++|..+|+......-..+. +... +|.++..+. .+..+|..+=.++.+.|++++|.+.|.+-
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 445566667888888888774211100000 1111 455555543 33556777777888888888888887442
Q ss_pred HCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC
Q 040801 118 VQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 194 (323)
-|...|.-+...+.+.|+ +.+.+...++.. ++....+.+..+|++.++ +++... | .. .|+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r---leele~-f---I~---~~n 1194 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR---LAELEE-F---IN---GPN 1194 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC---HHHHHH-H---Hh---CCC
Confidence 456677777888887777 556555555443 444444557777777763 343222 2 11 345
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 195 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
...|..+-..|...|++++|..+|... ..|..+...|++.|++++|.+.+++..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 566666777777777777777777774 367777777777777777777777664
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.00 E-value=0.00014 Score=70.04 Aligned_cols=152 Identities=8% Similarity=-0.193 Sum_probs=123.9
Q ss_pred HhCCChHHHHHHHHHHHH------CCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 101 TNKNLHHEAFLFYHEMIV------QGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~------~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
...|++++|++.+++..+ ....| +...+..+-..+...|+ |.+.++...+.. .-+...|..+-..|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 788999999999999872 12334 45667777777888888 888888887764 23567888888899999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 250 (323)
| ++++|.+.|++..+.. .-+...|..+-..+.+.|++++ ...+++..+.. +-+...|..+-.+|.+.|++++|.
T Consensus 481 g---~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 G---DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp T---CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C---CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9 7799999999988754 2356788889999999999999 99999998864 225678889999999999999999
Q ss_pred HHHHhccCC
Q 040801 251 DLFVKMLFP 259 (323)
Q Consensus 251 ~~~~~m~~~ 259 (323)
+.|++..+.
T Consensus 555 ~~~~~al~l 563 (681)
T 2pzi_A 555 RTLDEVPPT 563 (681)
T ss_dssp HHHHTSCTT
T ss_pred HHHHhhccc
Confidence 999999875
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.96 E-value=0.00018 Score=67.51 Aligned_cols=142 Identities=10% Similarity=-0.062 Sum_probs=73.6
Q ss_pred hHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHH
Q 040801 77 HVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK 150 (323)
Q Consensus 77 ~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~ 150 (323)
+|.+.|++.. +.+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+-..+...|+ |.+.++...+
T Consensus 7 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp --------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444454433 3345556666666666677777777776665531 1223445555555555555 5555555555
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc---CChHHHHHHHHHHHHh
Q 040801 151 FGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA---RDLRTVKRVHKCVDES 224 (323)
Q Consensus 151 ~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---~~~~~a~~~~~~m~~~ 224 (323)
.. ..+...+..+-..|.+.| ++++|.+.|++..+.. .-+...+..+...+... |+.++|...+++..+.
T Consensus 86 ~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 86 AA-PEHPGIALWLGHALEDAG---QAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 43 123455566666666666 4466666666655533 12345555566666666 6666666666666554
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.93 E-value=0.0012 Score=53.64 Aligned_cols=187 Identities=10% Similarity=-0.113 Sum_probs=132.9
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+...-..+...|+++.|...|+...+..- .++...|..+-.++...|++++|.+.|++..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 69 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN------------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAI 69 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC------------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 4555566677888999999999999998752 3677777778889999999999999999988
Q ss_pred HCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc-h-------HHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 040801 118 VQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD-S-------FLHNTLINMYSSCWCLDQPDEAIKIFYR 185 (323)
Q Consensus 118 ~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~-~-------~~~~~li~~~~~~g~~~~~~~a~~~~~~ 185 (323)
+. .| +...|..+-..+...|+ |...++...+.. |+ . ..|..+=..+...| ++++|++.|++
T Consensus 70 ~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~ 142 (228)
T 4i17_A 70 KK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAG---NIEKAEENYKH 142 (228)
T ss_dssp HT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred Hh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhc---cHHHHHHHHHH
Confidence 64 33 44567777777777777 888888887764 33 3 44667777778888 77999999999
Q ss_pred HHHcCCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 186 MEIENVKPN---AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 186 m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.... .|+ ...|..+-..+... +...++.+...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 143 al~~--~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 143 ATDV--TSKKWKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HTTS--SCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc--CCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 8764 565 45666666666543 334445554443 22334444433 23456688999999888654
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.90 E-value=0.00022 Score=60.81 Aligned_cols=169 Identities=5% Similarity=-0.096 Sum_probs=115.1
Q ss_pred HhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCC
Q 040801 80 LVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLAS 155 (323)
Q Consensus 80 ~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~ 155 (323)
+.+++..+.+...+..+-..+.+.|++++|.+.|++..+. .| +...+..+-..+...|+ |..+++...+.. |
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p 182 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--Q 182 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--C
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--c
Confidence 3333333445555666777788889999999999888663 34 34566667777777777 777777665443 4
Q ss_pred chHHHHHHH-HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc-cChhhH
Q 040801 156 DSFLHNTLI-NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW-SHVELK 233 (323)
Q Consensus 156 ~~~~~~~li-~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~ 233 (323)
+........ ..+...+ +.++|.+.|++..... ..+...+..+-..+...|+.++|...+.++.+..-. .+...+
T Consensus 183 ~~~~~~~~~~~~l~~~~---~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQA---ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp SHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred chHHHHHHHHHHHHhhc---ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 443322222 2244555 3367888888877654 346677888888888899999999999888876422 125678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 040801 234 TTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 234 ~~li~~~~~~g~~~~a~~~~~~m 256 (323)
..|...|...|+.++|...+++-
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 88888888889888888877753
No 88
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.89 E-value=0.00056 Score=54.83 Aligned_cols=125 Identities=10% Similarity=-0.063 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
.+..+-..+...|++++|.+.|++. +.|+...|..+-..+.+.|+ |.+.++...+.. ..+...|..+-.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445556677888888888888765 34455555555555555555 555555554433 223445555555555
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCC--------------C-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVK--------------P-NAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~--------------p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
..| ++++|.+.|++.....-. | +...+..+-..+...|+.++|...++...+.
T Consensus 83 ~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTE---KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTT---CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred Hcc---cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555 445566555555542210 1 1134444555555555555555555555443
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.89 E-value=0.0011 Score=58.37 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=15.4
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHH
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLR 65 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~ 65 (323)
..+-..+...|+++.|...+++..+
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3344455566777777777776654
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.89 E-value=0.00028 Score=62.49 Aligned_cols=192 Identities=9% Similarity=-0.075 Sum_probs=99.9
Q ss_pred hhcCCCchHHHHHHHHHHHhcC-CCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CC--
Q 040801 47 LEKCSTMRELKQIHAQMLRTSL-FFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ--GL-- 121 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~-~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 121 (323)
+...|+++.|...+++..+..- .++. ......+..+-..|...|++++|.+.+++-.+. ..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDD--------------IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCCh--------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 3466888888888888765421 0110 011234555555666666666666666654331 00
Q ss_pred -CC-CcccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH---
Q 040801 122 -IP-DRFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI--- 188 (323)
Q Consensus 122 -~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~--- 188 (323)
.+ ...+++.+-..+...|+ |.+.++...+. +-.+ ...+++.+-..|...| ++++|.+.|++...
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG---DDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Confidence 11 12344455555555555 55555444332 1111 1234555666666666 45666666666554
Q ss_pred -cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc----cChhhHHHHHHHHHhcCC---HHHHHHHHHh
Q 040801 189 -ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW----SHVELKTTLMDAYCKCKF---VSRAWDLFVK 255 (323)
Q Consensus 189 -~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~---~~~a~~~~~~ 255 (323)
.+......++..+-..+.+.|+.++|...+++..+..-. .....+..+-..|...|+ +++|...+++
T Consensus 254 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 022223556666666666666666666666666543211 112234444455555666 6666666665
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.88 E-value=0.0013 Score=53.65 Aligned_cols=160 Identities=9% Similarity=-0.032 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHhcchhh---HHHHHHHHHHcCCC-Cch-HHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR----FMFPSLFKSCADIYV---EKQLHSQAIKFGLA-SDS-FLHN 161 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~-~~~-~~~~ 161 (323)
..+-.+-..+.+.|++++|.+.|+++.+. .|+. ..+..+-.++.+.|+ |...++.+.+..-. +.. ..+-
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34444556678888999999999888764 2332 355566667777777 88888887765421 111 1233
Q ss_pred HHHHHHHh------------------cCCCCChHHHHHHHHHHHHcCCCCChH-HH-----------------HHHHHHH
Q 040801 162 TLINMYSS------------------CWCLDQPDEAIKIFYRMEIENVKPNAV-TL-----------------VNVLTAR 205 (323)
Q Consensus 162 ~li~~~~~------------------~g~~~~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~li~~~ 205 (323)
.+-.+|.. .| +.++|.+.|++..... |+.. .+ -.+-..+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~ 157 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQ---QARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYY 157 (225)
T ss_dssp HHHHHHHHHHC--------------CCH---HHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcH---HHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 34 6789999999988643 4332 22 2344567
Q ss_pred hccCChHHHHHHHHHHHHhCCccC----hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 206 ARARDLRTVKRVHKCVDESGFWSH----VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.|++++|...++.+.+.- |+ ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 158 ~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 158 TERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 88999999999999998763 43 256888899999999999999999988765
No 92
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.87 E-value=0.00021 Score=63.35 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=122.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----cccHHHHHHHhcchhh---HHHHHHHHHHc----CC-C-Cch
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPD----RFMFPSLFKSCADIYV---EKQLHSQAIKF----GL-A-SDS 157 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~-~-~~~ 157 (323)
.|-..=..+...|++++|.+.|++..+.- -.+| ..+|..+-..+...|+ |...+....+. +- . ...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 45555667789999999999999986631 1233 3567777777777777 66666665543 11 1 124
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-c
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE----NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDES----GF-W 227 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~ 227 (323)
.+++.+-..|...| ++++|.+.|++.... +-.+ ...++..+-..+...|++++|...+++..+. +- +
T Consensus 185 ~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 185 QCHSLFATNFLDLK---QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 67888889999999 779999999887653 1111 2258999999999999999999999998762 33 3
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 228 SHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 228 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
....++..+-..|.+.|++++|...+++..+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467788999999999999999999998754
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.86 E-value=0.00069 Score=68.84 Aligned_cols=213 Identities=7% Similarity=0.003 Sum_probs=136.8
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCC---ccch--------hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 49 KCSTMRELKQIHAQMLRTSLFFDP---CADY--------HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 49 ~~~~~~~a~~i~~~m~~~~~~~~~---y~~~--------~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+++++|.++.+... .|.. +++. +|.+-|.. ..|...|.-++.+|.+.|++++|.++|..-+
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiK--AdD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHh--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677888887777441 2222 3333 55555543 5777889999999999999999999997655
Q ss_pred HCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHH
Q 040801 118 VQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t 197 (323)
+.. ++....+.+..+|++.++-.+ ++...+ .++...|..+=+.|-..| ++++|..+|... ..
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rlee-le~fI~---~~n~ad~~~iGd~le~eg---~YeeA~~~Y~kA---------~n 1223 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAE-LEEFIN---GPNNAHIQQVGDRCYDEK---MYDAAKLLYNNV---------SN 1223 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHH-HHHHHh---CCCHHHHHHHHHHHHhcC---CHHHHHHHHHhh---------hH
Confidence 543 454445568888888877222 333332 345555666777777777 557777777663 36
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh----------------------C--CccChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 198 LVNVLTARARARDLRTVKRVHKCVDES----------------------G--FWSHVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------g--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
|..+...+++.|+++.|.+.+++.... | +.-+...+..++..|-+.|.+++|..++
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777777777666554221 1 2235566778899999999999999999
Q ss_pred HhccCC-CCchhhhHHHhhhccCCCCCcchhhh
Q 040801 254 VKMLFP-WNNYGQWAMSATVGPQGLVGRHSTAH 285 (323)
Q Consensus 254 ~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~ 285 (323)
+.-..- +.....|+....+...-+-+++.++.
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 876543 22333344333333333444444443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.84 E-value=0.0009 Score=55.76 Aligned_cols=168 Identities=8% Similarity=-0.092 Sum_probs=118.0
Q ss_pred hhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 38 YQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+..+-..+.+.|+++.|...|+...+..- +. ......+..+-.+|.+.|++++|.+.|++..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~--------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--TH--------------EWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--CS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CC--------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3445566677788999999999999987631 00 1115567778888999999999999999987
Q ss_pred HCCCCCC----cccHHHHHHHhcc--------hhh---HHHHHHHHHHcCCCCc-hHHH-----------------HHHH
Q 040801 118 VQGLIPD----RFMFPSLFKSCAD--------IYV---EKQLHSQAIKFGLASD-SFLH-----------------NTLI 164 (323)
Q Consensus 118 ~~g~~p~----~~ty~~ll~~~~~--------~~~---a~~~~~~m~~~g~~~~-~~~~-----------------~~li 164 (323)
+.. |+ ...+..+-.++.. .|+ |...++...+.. |+ .... ..+-
T Consensus 80 ~~~--p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 80 QIY--QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp HHC--TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHC--CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 742 32 2334444455544 566 888888887754 32 2233 4557
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHhcc----------CChHHHHHHHHHHHHhCCccCh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKP--NAVTLVNVLTARARA----------RDLRTVKRVHKCVDESGFWSHV 230 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~ 230 (323)
..|.+.| ++++|+..|++........ ....+..+..++... |++++|...++.+.+. .|+.
T Consensus 156 ~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 156 RLYERRE---LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHcc---CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 7788888 7799999999998753211 245677777778766 8899999999999876 3553
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.84 E-value=0.00029 Score=67.81 Aligned_cols=190 Identities=9% Similarity=-0.120 Sum_probs=137.0
Q ss_pred hcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-Ccc
Q 040801 48 EKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRF 126 (323)
Q Consensus 48 ~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 126 (323)
...+++++|.+.+++..+..+. .-.+..+.+...|..+-..|.+.|++++|.+.|++..+. .| +..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~-----------~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 468 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALD-----------ADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWR 468 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHH
T ss_pred ccccCHHHHHHHHHHhhhhccc-----------ccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHH
Confidence 5667788888888777621110 000001445677888889999999999999999998764 34 446
Q ss_pred cHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 040801 127 MFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLT 203 (323)
Q Consensus 127 ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 203 (323)
.|..+-..+...|+ |.+.|+...+.. .-+...|..+-.+|.+.|++ ++ ++.|++..+.+ .-+...|..+-.
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~---~~-~~~~~~al~~~-P~~~~a~~~lg~ 542 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNT---DE-HKFYQTVWSTN-DGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCC---CT-TCHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCh---HH-HHHHHHHHHhC-CchHHHHHHHHH
Confidence 67777677777777 888898888765 22567788999999999955 67 88898887754 336678999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCC--------HHHHHHHHHhccC
Q 040801 204 ARARARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKF--------VSRAWDLFVKMLF 258 (323)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~ 258 (323)
++.+.|+.++|...+++..+. .|+ ...|..+..+|...|+ +++|.+.++.+..
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 999999999999999987665 354 5667777777766554 6777777776653
No 96
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.0028 Score=57.41 Aligned_cols=208 Identities=8% Similarity=-0.097 Sum_probs=134.1
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhc-ccCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVF-SQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHE 115 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf-~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 115 (323)
...|+.+-..+...|+.++|.+.|++..+.-- +.. ++.......+|+.+-..|...|++++|...+++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~-----------~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQ-----------QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------hcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34567777788888999999999987654310 000 011134567899999999999999999999987
Q ss_pred HHHC----C--CCCC-cccHHHHHHHhcchh--h---HHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCCChHHHHHH
Q 040801 116 MIVQ----G--LIPD-RFMFPSLFKSCADIY--V---EKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLDQPDEAIKI 182 (323)
Q Consensus 116 m~~~----g--~~p~-~~ty~~ll~~~~~~~--~---a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~ 182 (323)
..+- . ..++ ..+|...-.++.+.| + |...|+...+.. |+ ...+..+...+.+.+..++.++|++.
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 6431 1 1111 234443333333322 2 888888887764 43 44455555554443333355788988
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 183 FYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 183 ~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+++..... +.+..++..+-..+.. .++.++|..++++..+.. +.+...+..+-..|.+.|+.++|.+.+++..+
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 88877643 2345556555544443 467888999999887764 33567788899999999999999999998765
Q ss_pred C
Q 040801 259 P 259 (323)
Q Consensus 259 ~ 259 (323)
.
T Consensus 276 ~ 276 (472)
T 4g1t_A 276 Y 276 (472)
T ss_dssp H
T ss_pred h
Confidence 4
No 97
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.82 E-value=0.0029 Score=57.62 Aligned_cols=210 Identities=14% Similarity=-0.002 Sum_probs=107.1
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCC------ccch-------hHHHhcccCCCCChhhHHHHHHHHHhCC-----
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDP------CADY-------HVRLVFSQISNPTIYTCNSIVRGYTNKN----- 104 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~------y~~~-------~a~~lf~~m~~~~~~~~~~li~~~~~~g----- 104 (323)
+-....+.|+++.|..+|+...+.|...-. |... +|.+.|.+....+...+..+=..+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 455566778999999999999888742222 2111 6777776655446666666666555655
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh------HHHHHHHHHHcCC-------------------------
Q 040801 105 LHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV------EKQLHSQAIKFGL------------------------- 153 (323)
Q Consensus 105 ~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~------a~~~~~~m~~~g~------------------------- 153 (323)
++++|++.|++-.+.|... .+..|-..|...+. +.+.+....+.|.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 7889999999887766432 33333222222111 2222222222221
Q ss_pred -------CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc----CChHHHHHHHHHHH
Q 040801 154 -------ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA----RDLRTVKRVHKCVD 222 (323)
Q Consensus 154 -------~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----~~~~~a~~~~~~m~ 222 (323)
..+...+..|-..|.+.|...+.++|++.|++-.+.| .++...+..+-..|... ++.++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2233355666666666663334567777777766665 33444434444444433 56666666666655
Q ss_pred HhCCccChhhHHHHHHH-H--HhcCCHHHHHHHHHhccCCC
Q 040801 223 ESGFWSHVELKTTLMDA-Y--CKCKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 223 ~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~ 260 (323)
.| +...+..|-.. | ...|+.++|.+.|++..+.|
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 22 33444444443 2 34566666666666665554
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.81 E-value=0.00017 Score=56.49 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHH-
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINM- 166 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~- 166 (323)
.+...-..+.+.|++++|...|++..+. .| +...+..+-..+...|+ |...++...+.. |+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 4555667888999999999999887552 23 44667777777777777 777776665443 333333222111
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhcCC
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDAYCKCKF 245 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 245 (323)
+...+ ...+|.+.|++..... +-+...+..+-..+...|++++|...++++.+..-.+ +...+..+...|...|+
T Consensus 84 ~~~~~---~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 84 LHQQA---AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHH---TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHhhc---ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 12222 1245788888877643 2257888888899999999999999999988764322 35678889999999999
Q ss_pred HHHHHHHHHhcc
Q 040801 246 VSRAWDLFVKML 257 (323)
Q Consensus 246 ~~~a~~~~~~m~ 257 (323)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999988653
No 99
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.80 E-value=0.0015 Score=55.56 Aligned_cols=164 Identities=9% Similarity=-0.070 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-c----ccHHHHHHHhcchhh---HHHHHHHHHHcCCC---Cc--h
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD-R----FMFPSLFKSCADIYV---EKQLHSQAIKFGLA---SD--S 157 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~---~~--~ 157 (323)
..+...+..+...|++++|.+.+++..+..-..+ . ..+..+-..+...|+ |...++...+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4456678889999999999999988776432111 1 112223333444445 77777776643211 11 4
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHH---c-CCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCC----c
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEI---E-NVKP--NAVTLVNVLTARARARDLRTVKRVHKCVDESGF----W 227 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~---~-g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~ 227 (323)
.+|+.+-..|...| ++++|.+.|++... . +-.+ ...+|..+-..|...|++++|...+++..+..- .
T Consensus 156 ~~~~~lg~~y~~~~---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 156 YIENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 58889999999999 77999999988763 1 1111 225888899999999999999999998865321 1
Q ss_pred c-ChhhHHHHHHHHHhcCCHHHH-HHHHHhcc
Q 040801 228 S-HVELKTTLMDAYCKCKFVSRA-WDLFVKML 257 (323)
Q Consensus 228 p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 257 (323)
. -..+|..+-..|.+.|+.++| ...+++..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 156778888899999999999 77676643
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.80 E-value=0.0013 Score=53.19 Aligned_cols=165 Identities=10% Similarity=-0.061 Sum_probs=119.3
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchh----h---HHHHHHHHHHcCCCCchHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIY----V---EKQLHSQAIKFGLASDSFLH 160 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~----~---a~~~~~~m~~~g~~~~~~~~ 160 (323)
-+...+..+=..|...+++++|++.|++-.+.| +...+..|=..+.. + + |.++++...+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456677777788888999999999999988876 44556666666666 4 3 888888887765 45566
Q ss_pred HHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 161 NTLINMYSS-CWCLDQPDEAIKIFYRMEIENVK-PNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 161 ~~li~~~~~-~g~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
..|-..|.. .|...++++|++.|++-.+.|.. -+...+..|=..|.. .++.++|...+++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 666666654 11122789999999988766521 126677777777777 78899999999999876 23455666
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHhccCCCC
Q 040801 235 TLMDAYCKC-K-----FVSRAWDLFVKMLFPWN 261 (323)
Q Consensus 235 ~li~~~~~~-g-----~~~~a~~~~~~m~~~~~ 261 (323)
.|-..|... | +.++|...|++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 677777654 3 89999999998877653
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.79 E-value=0.00062 Score=63.84 Aligned_cols=147 Identities=7% Similarity=-0.082 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHH
Q 040801 104 NLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 104 g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a 179 (323)
|++++|.+.|++..+. .| +...|..+-..+...|+ |.+.++...+.. ..+...|..+-..|...| ++++|
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g---~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQ---RHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC---CHHHH
Confidence 5667777777666543 23 34555555566666666 666666665543 123556666777777777 55777
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc---CCHHHHHHHHHhc
Q 040801 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC---KFVSRAWDLFVKM 256 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m 256 (323)
.+.|++..+.. .-+...+..+-..+.+.|+.++|...+++..+.. +-+...+..+...|.+. |+.++|.+.+++.
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77777766543 2245666667777777777777777777776653 22355666677777777 7777777777766
Q ss_pred cC
Q 040801 257 LF 258 (323)
Q Consensus 257 ~~ 258 (323)
.+
T Consensus 155 l~ 156 (568)
T 2vsy_A 155 VA 156 (568)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.79 E-value=0.0029 Score=55.53 Aligned_cols=193 Identities=8% Similarity=-0.086 Sum_probs=115.2
Q ss_pred HhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 46 SLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI----YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 46 ~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
.+...|+++.|...+++.....- ..+. ..++.+-..+...|++++|.+.+++..+..-
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP------------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC------------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 44567899999999988776531 1111 2345555667778888888888877644210
Q ss_pred -CCCc----ccHHHHHHHhcchhh---HHHHHHHHHHc----CCC--C-chHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 040801 122 -IPDR----FMFPSLFKSCADIYV---EKQLHSQAIKF----GLA--S-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186 (323)
Q Consensus 122 -~p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m 186 (323)
.++. .++..+-..+...|+ |...++...+. +.. | ....+..+-..|...| ++++|.+.+++.
T Consensus 85 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a 161 (373)
T 1hz4_A 85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA---RLDEAEASARSG 161 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 1111 123334444555555 55555555432 222 2 2345566777777777 668888888777
Q ss_pred HHcCC--CC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh-hhHH-----HHHHHHHhcCCHHHHHHHHHhc
Q 040801 187 EIENV--KP--NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV-ELKT-----TLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 187 ~~~g~--~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m 256 (323)
....- .+ ...+|..+-..+...|++++|...+++..+..-.++. ..+. .....+...|+.++|...+++.
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 65321 11 2346667777778888888888888887654222211 1122 2334467888888888888887
Q ss_pred cCC
Q 040801 257 LFP 259 (323)
Q Consensus 257 ~~~ 259 (323)
...
T Consensus 242 ~~~ 244 (373)
T 1hz4_A 242 AKP 244 (373)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 103
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.78 E-value=0.0016 Score=59.01 Aligned_cols=215 Identities=12% Similarity=0.043 Sum_probs=140.1
Q ss_pred chhhhhhHHHhhcCCCchHHHHHHHHHHHhc--C-CC---CC-------------ccch---hHHHhcccCC--CC-Chh
Q 040801 37 QYQAHFCLVSLEKCSTMRELKQIHAQMLRTS--L-FF---DP-------------CADY---HVRLVFSQIS--NP-TIY 91 (323)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~i~~~m~~~~--~-~~---~~-------------y~~~---~a~~lf~~m~--~~-~~~ 91 (323)
..+|+-+-..+...|++++|...++...+.. + .+ .. +++. .|.+.|++.. .| +..
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 3456777778889999999999998776432 1 11 11 1111 7888887654 33 444
Q ss_pred hHHHHHHH---HHhCCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHhcchh----h---HHHHHHHHHHcCCCCchHHH
Q 040801 92 TCNSIVRG---YTNKNLHHEAFLFYHEMIVQGLIPD-RFMFPSLFKSCADIY----V---EKQLHSQAIKFGLASDSFLH 160 (323)
Q Consensus 92 ~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~~----~---a~~~~~~m~~~g~~~~~~~~ 160 (323)
.+..+-.. +...++.++|++.|++-.+. .|+ ..++..+-..+...+ + |.+.++...+.. ..+..++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 44444333 45567888899888877653 343 344444433333322 2 888888877654 3456778
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc-------------------cCChHHHHHHHHHH
Q 040801 161 NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR-------------------ARDLRTVKRVHKCV 221 (323)
Q Consensus 161 ~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-------------------~~~~~~a~~~~~~m 221 (323)
..+-..|.+.| ++++|.+.|++..... +-+..++..+-..|.. .+..+.|...++..
T Consensus 251 ~~lg~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 251 RSAAKFYRRKD---EPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---chHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88999999999 6799999999887643 2244555554443322 12345566666666
Q ss_pred HHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 222 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.. +.+...+..+-..|.+.|++++|.+.|++..+.
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6543 234667888999999999999999999987654
No 104
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=0.0012 Score=46.77 Aligned_cols=99 Identities=13% Similarity=-0.117 Sum_probs=83.6
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
....+..+...+...| ++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 77 (118)
T 1elw_A 3 QVNELKEKGNKALSVG---NIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3556778888888999 7799999999988754 3367888888999999999999999999998764 235778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+...|.+.|++++|.+.+++..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999999998765
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.76 E-value=0.00084 Score=57.17 Aligned_cols=156 Identities=12% Similarity=0.012 Sum_probs=114.7
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGL 121 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 121 (323)
.+-..+...|+++.|...++...+.. +.+...+..+-..+.+.|++++|.+.+++....
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-------------------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-------------------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-------------------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 34444556677777777777766653 456778899999999999999999999988654
Q ss_pred CCCcccHHHHHHH--hcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC-CCh
Q 040801 122 IPDRFMFPSLFKS--CADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVK-PNA 195 (323)
Q Consensus 122 ~p~~~ty~~ll~~--~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~-p~~ 195 (323)
.|+.. +..+..+ +...++ +...++...+.. ..+...+..+-..|...| ++++|++.|++.....-. .+.
T Consensus 181 ~p~~~-~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g---~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 DQDTR-YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVG---RNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GCSHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTGGGG
T ss_pred hcchH-HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcccccccc
Confidence 45543 2222222 333333 777777777654 235778899999999999 679999999999886422 236
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 196 VTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 196 ~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
..+..+...+...|+.+.|...+++...
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7899999999999999999888877643
No 106
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.73 E-value=0.00097 Score=48.63 Aligned_cols=100 Identities=13% Similarity=-0.023 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
.+...|..+-..+...| ++++|.+.|++..... ..+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKG---DYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 45677888899999999 5699999999987653 3367888899999999999999999999998763 23577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+...|.+.|++++|.+.|++..+.
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8999999999999999999988654
No 107
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.72 E-value=0.00081 Score=48.71 Aligned_cols=99 Identities=13% Similarity=-0.080 Sum_probs=81.7
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
+...+..+...+...| ++++|.+.|++..... ..+...+..+...+...|++++|...++...+.. +.+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVE---NFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 4566777888888888 6799999999987754 3467788888899999999999999999998763 234677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+...|.+.|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 888999999999999999987654
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.72 E-value=0.00036 Score=55.32 Aligned_cols=154 Identities=10% Similarity=-0.146 Sum_probs=99.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHH----cCCCC-chHHHHHHHHHHHhcCC
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIK----FGLAS-DSFLHNTLINMYSSCWC 172 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~ 172 (323)
...|++++|.+.++..... ......++..+-..+...|+ |...++...+ .|..+ ...++..+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g- 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG- 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-
Confidence 4567788888754444321 11233455555555666666 6666655543 22222 3466788888899999
Q ss_pred CCChHHHHHHHHHHHHc----CCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCcc-ChhhHHHHHHHHH
Q 040801 173 LDQPDEAIKIFYRMEIE----NVKP--NAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWS-HVELKTTLMDAYC 241 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~ 241 (323)
++++|.+.+++.... +-.| ....+..+-..+...|++++|...+++..+. +-.. -..++..+-..|.
T Consensus 81 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 81 --NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 679999999887653 2111 2456777888889999999999999988643 2111 1334677888899
Q ss_pred hcCCHHHHHHHHHhccC
Q 040801 242 KCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 242 ~~g~~~~a~~~~~~m~~ 258 (323)
+.|++++|...+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 99999999999887654
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.68 E-value=0.00099 Score=50.99 Aligned_cols=98 Identities=9% Similarity=-0.084 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
...+..+-..+.+.| ++++|.+.|++..... +-+...|..+-.++...|++++|...|++..+.. +-+...|..+
T Consensus 36 ~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKG---RIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 456777778888889 6799999999998764 3467888889999999999999999999998874 2357788899
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-.+|.+.|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.68 E-value=0.00043 Score=52.86 Aligned_cols=97 Identities=14% Similarity=-0.083 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLM 237 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 237 (323)
..+..+-..+...| ++++|.+.|++..... ..+..++..+...+...|++++|...++...+.. +.+...|..+-
T Consensus 14 ~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAK---DYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566666677777 6678888887776643 2356677777777778888888888888777653 23456677777
Q ss_pred HHHHhcCCHHHHHHHHHhccCC
Q 040801 238 DAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..|.+.|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 7788888888888888777653
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.68 E-value=0.0017 Score=52.29 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
.-..+.+.|++++|.+.|++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344677899999999999998763
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.67 E-value=0.0018 Score=46.34 Aligned_cols=114 Identities=19% Similarity=0.117 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
...|..+...+...|++++|.++|++..+.. | .+..++..+...|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-------------------------------~~~~~~~~la~~~~~ 55 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------------------------NNAEAWYNLGNAYYK 55 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-------------------------------CcHHHHHHHHHHHHH
Confidence 4567777888888888888888888776431 1 123456667777777
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYC 241 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 241 (323)
.| ++++|...|+++.... ..+..++..+...+...|++++|...++++.+.. +.+...+..+-..+.
T Consensus 56 ~~---~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 56 QG---DYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hC---CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 77 6688888888877654 3456777788888888888888888888887653 123344444444443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.67 E-value=0.00062 Score=58.54 Aligned_cols=162 Identities=7% Similarity=-0.052 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC-chH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQ----GLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS-DSF 158 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~-~~~ 158 (323)
.|+.....|...|++++|.+.|.+..+- |-.+ -..+|+.+-..+.+.|+ |...++...+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555667788889999999988876442 1111 12466666667766666 66666655433 2111 245
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccC
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIE----NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWSH 229 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~ 229 (323)
+++.+-..|.. | ++++|++.|++.... |-.+ ...+++.+-..+.+.|++++|...+++..+. +..+.
T Consensus 118 ~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 118 ALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 67778888877 7 679999999887642 1111 1467888889999999999999999998753 22222
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 230 -VELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 230 -~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
...+..+...+...|++++|...|++..
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2356677778888899999999999987
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.67 E-value=0.0025 Score=50.96 Aligned_cols=118 Identities=17% Similarity=-0.037 Sum_probs=94.0
Q ss_pred Hhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC
Q 040801 134 SCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD 210 (323)
Q Consensus 134 ~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 210 (323)
.+...|+ |...++.. +.|+...|..+-..|.+.| ++++|++.|++..... ..+...|..+-..+...|+
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILK---NMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3444455 55555544 4678889999999999999 7799999999988754 3467889999999999999
Q ss_pred hHHHHHHHHHHHHhC--------------Ccc-ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 211 LRTVKRVHKCVDESG--------------FWS-HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 211 ~~~a~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+++|...++...+.. ..| ....+..+-.+|.+.|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999998743 112 1267888888999999999999999998765
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.66 E-value=0.00091 Score=49.32 Aligned_cols=102 Identities=9% Similarity=-0.022 Sum_probs=84.4
Q ss_pred CCCc-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh
Q 040801 153 LASD-SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231 (323)
Q Consensus 153 ~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 231 (323)
+.|+ ...+...=..|.+.| ++++|++.|++..... +.+...|..+-.++.+.|++++|...++...+.. +.+..
T Consensus 8 inP~~a~~~~~~G~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 82 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKG---DYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIK 82 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhH
Confidence 3443 345666777888999 7799999999988754 3477899999999999999999999999998864 23577
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.|..+-.+|...|++++|.+.|++..+-
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999998764
No 116
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.66 E-value=0.00053 Score=48.30 Aligned_cols=99 Identities=8% Similarity=-0.172 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc--ChhhH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS--HVELK 233 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~ 233 (323)
+...|..+-..+...| ++++|...|++..... ..+...|..+-..+...|++++|...+++..+.. +. +...+
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAG---NYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp STTGGGGHHHHHHSSC---CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 3456777888888888 7799999999988754 3467788888899999999999999999998763 22 47788
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhccCC
Q 040801 234 TTLMDAYCKC-KFVSRAWDLFVKMLFP 259 (323)
Q Consensus 234 ~~li~~~~~~-g~~~~a~~~~~~m~~~ 259 (323)
..+...|.+. |+.++|.+.+++....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8899999999 9999999999998765
No 117
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.65 E-value=0.0011 Score=63.61 Aligned_cols=178 Identities=11% Similarity=-0.006 Sum_probs=128.9
Q ss_pred hHH-HhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---------CCCC------------cccHHHH
Q 040801 77 HVR-LVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG---------LIPD------------RFMFPSL 131 (323)
Q Consensus 77 ~a~-~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~ty~~l 131 (323)
.|. ++|+.-. +.+...|-..+...-+.|++++|.++|+...... -.|+ ...|...
T Consensus 361 ~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 361 TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 443 5554433 4566668888888899999999999999987631 0142 2346666
Q ss_pred HHHhcchhh---HHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHh
Q 040801 132 FKSCADIYV---EKQLHSQAIKF-G-LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARA 206 (323)
Q Consensus 132 l~~~~~~~~---a~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 206 (323)
++...+.|. |..+|....+. + ..+..++..+.+.-.+ .+ +.+.|.++|+...+. ..-+...+...+....
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~---d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SK---DTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TS---CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 666656665 99999998876 3 3445555555554332 23 458999999988875 3335566778888888
Q ss_pred ccCChHHHHHHHHHHHHhCCcc--ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 207 RARDLRTVKRVHKCVDESGFWS--HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..|+.+.|..+|++..+..-.+ ....|...++--.+.|+.+.+..+.+++.+.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999988765322 3568899999889999999999999999865
No 118
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.65 E-value=0.00068 Score=59.95 Aligned_cols=163 Identities=13% Similarity=-0.021 Sum_probs=120.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----cccHHHHHHHhcchhh---HHHHHHHHHHc----CC-CC-chH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQG-LIPD----RFMFPSLFKSCADIYV---EKQLHSQAIKF----GL-AS-DSF 158 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~-~~-~~~ 158 (323)
|-..=..+...|++++|.+.|++..+.. -.+| ..++..+-..+...|+ |...+....+. +- .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4444556788999999999999986532 1233 3566677777777777 66666665433 21 11 256
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCccC
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEI----ENVK-PNAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWSH 229 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~----~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~ 229 (323)
+++.+-..|...| ++++|.+.|++... .+-. ....++..+-..+...|+.++|...+++..+. +-+..
T Consensus 184 ~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 184 SLFVIAGNYDDFK---HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 7888899999999 77999999988765 2333 34568899999999999999999999998761 32333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
..++..+-..|.+.|+.++|...+++..+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999998643
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.61 E-value=0.0015 Score=49.55 Aligned_cols=99 Identities=5% Similarity=-0.119 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
+...+..+-..+.+.| ++++|...|++..... ..+...|..+-.++...|++++|...+++..+.. +-+...|..
T Consensus 20 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSG---XYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3456677788888999 7799999999988754 3477788888889999999999999999998864 235678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+-.+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999988653
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.60 E-value=0.0011 Score=48.06 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--ccC----h
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF--WSH----V 230 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~ 230 (323)
...|..+-..+...| ++++|...|++..... ..+...+..+...+...|++++|...++...+..- .++ .
T Consensus 4 ~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKK---DFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 356777888888988 7799999999988754 34678888899999999999999999999976531 122 6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..|..+...|.+.|++++|.+.|++..+.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67888899999999999999999988765
No 121
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.59 E-value=0.0022 Score=47.25 Aligned_cols=100 Identities=12% Similarity=-0.102 Sum_probs=85.0
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
.+...|..+-..+...| ++++|...|++..... ..+...|..+-..+...|++++|...++...+.. +-+...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGR---KYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 45678888889999999 7799999999988754 3467888999999999999999999999998864 23577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+-.+|.+.|++++|...|++..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.0021 Score=46.81 Aligned_cols=98 Identities=13% Similarity=-0.084 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
...|..+-..+.+.| ++++|++.|++..... ..+...|..+-.++.+.|++++|...++...+.. +-+...|..+
T Consensus 4 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKS---DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345667777888888 7799999999988754 3467889999999999999999999999998864 2347788889
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-.+|...|++++|...|++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.56 E-value=0.002 Score=48.27 Aligned_cols=98 Identities=10% Similarity=-0.114 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
...+..+-..+.+.| ++++|.+.|++..... +.+...|..+-.++...|++++|...++...+.. +-+...+..+
T Consensus 18 ~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAG---KWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHc---cHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 344556667788888 7799999999988754 3467788888889999999999999999998874 3356778888
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC
Q 040801 237 MDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
-.+|...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999988654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.55 E-value=0.003 Score=47.96 Aligned_cols=129 Identities=15% Similarity=-0.021 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..|..+-..+...|++++|.+.|++..+. .| .+..++..+-..|...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~-------------------------------~~~~~~~~~a~~~~~~ 60 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NP-------------------------------SNAIYYGNRSLAYLRT 60 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--ST-------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC-------------------------------CChHHHHHHHHHHHHc
Confidence 44666667777778888888777776542 12 1245566777778888
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH--HHHHHHHHhcCCHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK--TTLMDAYCKCKFVSR 248 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~ 248 (323)
| ++++|.+.|++..... ..+...|..+-..+...|++++|...+++..+..- -+...+ -.+...+.+.|++++
T Consensus 61 ~---~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 61 E---CYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp T---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6689999888887654 34567788888888899999999999988877631 233344 334444778889999
Q ss_pred HHHHHHhcc
Q 040801 249 AWDLFVKML 257 (323)
Q Consensus 249 a~~~~~~m~ 257 (323)
|.+.+++..
T Consensus 136 A~~~~~~~~ 144 (166)
T 1a17_A 136 AIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHcccchH
Confidence 988887654
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.53 E-value=0.0029 Score=54.28 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=124.3
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNP--TIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
|......+...|+++.|...|.+..+.. .+...+ -...|+.+-..|.+.|++++|.+.|++-.
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAH---------------ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444455566667777776666655432 222211 13568888889999999999999998764
Q ss_pred HC----CCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 040801 118 VQ----GLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFY 184 (323)
Q Consensus 118 ~~----g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~ 184 (323)
+- |-.. -..++..+-..+.. |+ |...++...+. |-.. ...+++.+-..|.+.| ++++|++.|+
T Consensus 104 ~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~ 179 (307)
T 2ifu_A 104 VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ---KFDEAAASLQ 179 (307)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 32 2111 12456666667766 77 77777766543 2111 1467888999999999 7799999999
Q ss_pred HHHHc----CCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh------hhHHHHHHHHHhcCCHHHHHHH
Q 040801 185 RMEIE----NVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV------ELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 185 ~m~~~----g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~ 252 (323)
+.... +..++. .++..+...+...|+.++|...+++.. . .|+. .....++.+| ..|+.+.+.++
T Consensus 180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 88752 222222 366667777778899999999999987 3 3421 2345566655 67888777774
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.51 E-value=0.0022 Score=49.74 Aligned_cols=113 Identities=12% Similarity=-0.021 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-HhccCCh--HHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA-RARARDL--RTVKRV 217 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~~~~--~~a~~~ 217 (323)
|...++...+.. ..+...|..+-..|...| ++++|.+.|++..... ..+...+..+-.. +...|+. ++|...
T Consensus 29 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 29 QLQALQDKIRAN-PQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp CCHHHHHHHHHC-CSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 566666665543 235677888888888988 6799999999887654 2356677777777 6688888 999999
Q ss_pred HHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 218 HKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 218 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
++.+.+.. +-+...+..+...|.+.|++++|...|++..+.
T Consensus 104 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 104 IDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99988763 224677888888999999999999999987654
No 127
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.50 E-value=0.0022 Score=49.22 Aligned_cols=99 Identities=12% Similarity=-0.074 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
+...|..+-..|.+.| ++++|++.|++..... .-+...|..+-.++.+.|++++|...+++..+.. +-+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARK---EYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4567788888899999 7799999999988754 3377888899999999999999999999998874 235778889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC
Q 040801 236 LMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+-.+|.+.|++++|...|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.46 E-value=0.022 Score=46.19 Aligned_cols=161 Identities=9% Similarity=-0.079 Sum_probs=111.5
Q ss_pred hhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 040801 40 AHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
+..+-..+.+.|+++.|...|+.+.+..- +. ......+..+-.+|.+.|++++|.+.|++..+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~--------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYP--FG--------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC--------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455567778999999999999988632 00 112345777788999999999999999998764
Q ss_pred CCCCCcc----cHHHHHHHhc------------------chhh---HHHHHHHHHHcCCCCch-HHH-------------
Q 040801 120 GLIPDRF----MFPSLFKSCA------------------DIYV---EKQLHSQAIKFGLASDS-FLH------------- 160 (323)
Q Consensus 120 g~~p~~~----ty~~ll~~~~------------------~~~~---a~~~~~~m~~~g~~~~~-~~~------------- 160 (323)
.|+.. .+-.+-.++. ..|+ |...++.+.+.- |+. ..+
T Consensus 71 --~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 71 --NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp --CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH
T ss_pred --CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH
Confidence 34432 2222222222 1334 778888877653 432 222
Q ss_pred ----HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040801 161 ----NTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN----AVTLVNVLTARARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 161 ----~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 225 (323)
-.+-..|.+.| ++++|+..|++..... |+ ...+..+..++.+.|+.++|...++.+...+
T Consensus 147 ~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERG---AWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23455678888 7799999999998753 33 2568888999999999999999999888764
No 129
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.0018 Score=52.09 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=38.6
Q ss_pred HHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 45 VSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS---NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 45 ~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
..+...|+++.|...|+...+..- +. ..+.-. ..+. ......++.+-..|.+.|++++|.+.|++..+
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p--~~---~~~~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNI--DR---TEMYYW-TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH--HH---HHHHHH-HHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CC---hHHHHH-hhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677999999999999887631 10 000000 0000 00011122266777788888888888877665
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.41 E-value=0.0047 Score=44.80 Aligned_cols=120 Identities=13% Similarity=-0.026 Sum_probs=76.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
..+...|..+-..+.+.|++++|.+.|++..+. .|+ +...+..+-..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~-------------------------------~~~~~~~la~~ 59 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK-------------------------------DAKLYSNRAAC 59 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT-------------------------------CHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-------------------------------cHHHHHHHHHH
Confidence 445567888888888999999999998887653 221 12344555555
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK 244 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 244 (323)
|...| ++++|.+.|++..... ..+...+..+-..+.+.|++++|...+++..+.. +-+...+..+...+.+.|
T Consensus 60 ~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 60 YTKLL---EFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHhc---cHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 66666 5577777776666543 2245666666667777777777777777766542 123445555555555544
No 131
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.41 E-value=0.0039 Score=59.73 Aligned_cols=202 Identities=11% Similarity=-0.040 Sum_probs=135.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcC---------C
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAF-LFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFG---------L 153 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g---------~ 153 (323)
..+...|-....-+-+.|+.++|. ++|++-... ++.+...|-..+...-+.|+ |.++++.+.+.. -
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446677777788888889999997 999988753 33343334444444445555 888888887641 0
Q ss_pred CC------------chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-C-CCCChHHHHHHHHHHhccCChHHHHHHHH
Q 040801 154 AS------------DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-N-VKPNAVTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 154 ~~------------~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~-g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
.| ...+|-..+....+.| +.+.|.++|...... + ..+......+.|.-.+ .++.+.|..+|+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~---~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife 494 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQ---GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLE 494 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 13 2346888888888888 569999999998775 2 2233333333444322 356999999999
Q ss_pred HHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCC----chhhh-HHHhhhccCCCCCcchhh-hhhhCCCCc
Q 040801 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWN----NYGQW-AMSATVGPQGLVGRHSTA-HQISGPCPK 293 (323)
Q Consensus 220 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~-~~~~~~~~~~~~~~~~~a-~~l~~~~~~ 293 (323)
...+. ++-+...|...++...+.|+.+.|..+|+....... ....| .+...-..+|....+... ......+|+
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99886 444667778999988999999999999999887632 23445 566666666655444333 233344444
Q ss_pred h
Q 040801 294 K 294 (323)
Q Consensus 294 ~ 294 (323)
+
T Consensus 574 ~ 574 (679)
T 4e6h_A 574 V 574 (679)
T ss_dssp C
T ss_pred C
Confidence 3
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.40 E-value=0.0037 Score=45.07 Aligned_cols=120 Identities=13% Similarity=-0.049 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
+...|..+-..+...|++++|.+.|++..+. .|+ +...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~~a~~~~ 57 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPA-------------------------------NAVYFCNRAAAYS 57 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC-------------------------------CHHHHHHHHHHHH
Confidence 3456777777888888888888888776643 121 2344556666677
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCH
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 246 (323)
..| ++++|.+.+++..... ..+...+..+-..+...|++++|...+++..+.. +.+...+..+...+.+.|+.
T Consensus 58 ~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 58 KLG---NYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred Hhh---chHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777 5678888887776643 2346677777777888888888888888877653 22455666677777766653
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.0043 Score=46.03 Aligned_cols=98 Identities=12% Similarity=-0.076 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN----AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE 231 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 231 (323)
+...+..+-..+...| ++++|.+.|++.... .|+ ...|..+-..+...|++++|...++...+.. +.+..
T Consensus 27 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCG---DYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 5677888888899989 779999999998764 465 6788888889999999999999999998763 23567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+..+-.+|.+.|+.++|...|++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7888889999999999999999988654
No 134
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.38 E-value=0.001 Score=50.59 Aligned_cols=102 Identities=8% Similarity=-0.067 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLM 237 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li 237 (323)
.+-.+-..|.+.| ++++|++.|++..... +-+..+|..+-..+...|++++|...|+...+. .| +...|..+-
T Consensus 33 ~~~~la~~y~~~~---~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la 106 (150)
T 4ga2_A 33 KGFYFAKLYYEAK---EYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIA 106 (150)
T ss_dssp THHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3445666677777 5577777777776643 225567777777777777777777777777665 23 355677777
Q ss_pred HHHHhcCCHHHHHHH-HHhccC-CCCchhhh
Q 040801 238 DAYCKCKFVSRAWDL-FVKMLF-PWNNYGQW 266 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~-~~~m~~-~~~~~~~~ 266 (323)
..|.+.|+.++|.+. +++..+ .+..+..+
T Consensus 107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 777777777655443 454433 23344444
No 135
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.28 E-value=0.059 Score=48.86 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=131.8
Q ss_pred CchHHHHHHHHHHHhcCCCCC------ccch-------hHHHhcccCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 52 TMRELKQIHAQMLRTSLFFDP------CADY-------HVRLVFSQIS-NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 52 ~~~~a~~i~~~m~~~~~~~~~------y~~~-------~a~~lf~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
++++|...++...+.|...-. |... .+.+.+.... .-+...+..+-..|...+.++++.+-.+...
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 678899999988887643322 1111 2333332222 2344556666667777775555555544443
Q ss_pred HCCCCCCcccHHHHHHHhcchh---h---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHcC
Q 040801 118 VQGLIPDRFMFPSLFKSCADIY---V---EKQLHSQAIKFGLASDSFLHNTLINMYSSC-WCLDQPDEAIKIFYRMEIEN 190 (323)
Q Consensus 118 ~~g~~p~~~ty~~ll~~~~~~~---~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~~~~a~~~~~~m~~~g 190 (323)
+.-...+...+..|-..+.+.| + |.+.++...+.|. ++...+..|-..|... |...+.++|++.|++.. .|
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g 246 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG 246 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC
Confidence 3222333346666766666666 4 7778888777773 4444445555555433 11127788999988876 33
Q ss_pred CCCChHHHHHHHHH-H--hccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC-----CHHHHHHHHHhccCCCCc
Q 040801 191 VKPNAVTLVNVLTA-R--ARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK-----FVSRAWDLFVKMLFPWNN 262 (323)
Q Consensus 191 ~~p~~~t~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~ 262 (323)
+...+..+-.. + ...++.++|...|++..+.| +...+..|-..|. .| +.++|.+.|++.. .+..
T Consensus 247 ---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~ 318 (452)
T 3e4b_A 247 ---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREV 318 (452)
T ss_dssp ---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCH
T ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCH
Confidence 34444444444 3 45788999999999888877 5556666666666 45 8999999998888 5433
Q ss_pred hhhhHHHhhhcc-CCCCCcchhhhhh
Q 040801 263 YGQWAMSATVGP-QGLVGRHSTAHQI 287 (323)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~~~a~~l 287 (323)
.....+...+.. .+...+.++|..+
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 333333333322 2223455555433
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.26 E-value=0.011 Score=47.61 Aligned_cols=172 Identities=11% Similarity=-0.085 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 040801 108 EAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFY 184 (323)
Q Consensus 108 ~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~ 184 (323)
+|++.|++..+.| +...+..|=..+...++ |.+.++...+.| +...+..|=..|...|...+.++|++.|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4667777776664 44555555555555556 888898888876 45566666666776443337899999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCc-cChhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 040801 185 RMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFW-SHVELKTTLMDAYCK----CKFVSRAWDLFVK 255 (323)
Q Consensus 185 ~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~ 255 (323)
+-.+.| +...+..|-..|.. .++.++|...+++..+.|.. -+...+..|-..|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 987765 56677777777776 88999999999998887632 125677778888888 7899999999999
Q ss_pred ccCCCCchhhh-HHHhhhccC-C--CCCcchhhhhhh
Q 040801 256 MLFPWNNYGQW-AMSATVGPQ-G--LVGRHSTAHQIS 288 (323)
Q Consensus 256 m~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~a~~l~ 288 (323)
..+.+..+... .+...+... + ...+.++|...+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 87763334333 443443222 2 233555554443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.24 E-value=0.0027 Score=49.31 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=73.0
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCCCCCh-
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINM-YSSCWCLDQP- 176 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~~- 176 (323)
..|++++|.+.+++..+.. +.+...|..+-..+...|+ |...++...+.. ..+...+..+-.. |...| ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~---~~~ 96 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS---QHM 96 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT---TCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC---Ccc
Confidence 4556666666666654431 1233455555555555555 666666655443 1245556666666 66777 54
Q ss_pred -HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 177 -DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 177 -~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
++|.+.|++..... .-+...+..+-..+...|++++|...++.+.+.
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88999998887754 234677777888888899999999999888775
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.22 E-value=0.0074 Score=52.55 Aligned_cols=146 Identities=13% Similarity=-0.026 Sum_probs=110.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
+...|..+=..|.+.|++++|.+.|++..+.. |+...+ ... +.++-. ....+|..+-.+|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~---------~~~~~~~~~~--------~~~~~~~nla~~~ 206 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF---------SNEEAQKAQA--------LRLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC---------CSHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC---------ChHHHHHHHH--------HHHHHHHHHHHHH
Confidence 45678888889999999999999999887632 332211 011 111110 1246788899999
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
.+.| ++++|++.|++..... ..+...|..+-.++...|++++|...|++..+.. +-+...+..+-..+.+.|+.+
T Consensus 207 ~~~g---~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 207 LKLQ---AFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcC---CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999 7799999999998764 3477889999999999999999999999998863 235678888999999999999
Q ss_pred HH-HHHHHhccC
Q 040801 248 RA-WDLFVKMLF 258 (323)
Q Consensus 248 ~a-~~~~~~m~~ 258 (323)
+| ...+++|..
T Consensus 282 ~a~~~~~~~~~~ 293 (336)
T 1p5q_A 282 AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 98 456666643
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.21 E-value=0.0041 Score=45.31 Aligned_cols=95 Identities=7% Similarity=-0.130 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHH
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA 239 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 239 (323)
+-.+-..+.+.| ++++|+..|++..... .-+...|..+-..+...|+.++|...+++..+.. +-+...+..+-.+
T Consensus 20 ~~~~g~~~~~~g---~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLA---NLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444556778888 7799999999998754 2367788888889999999999999999998864 2256788889999
Q ss_pred HHhcCCHHHHHHHHHhccCC
Q 040801 240 YCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 240 ~~~~g~~~~a~~~~~~m~~~ 259 (323)
|.+.|+.++|...+++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.19 E-value=0.0069 Score=44.46 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--ccC----h
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGF--WSH----V 230 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~ 230 (323)
...+..|=..+.+.| ++++|++.|++..+.. +-+...|+.+-.+|...|++++|...++...+..- .++ .
T Consensus 8 A~a~~~lG~~~~~~~---~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQK---DFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 345666777888899 7799999999988754 33578899999999999999999999999876421 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 231 ELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 231 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..|..+-.+|...|++++|.+.|++..+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666777888999999999999987643
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.19 E-value=0.012 Score=40.91 Aligned_cols=99 Identities=8% Similarity=-0.129 Sum_probs=67.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
+...|..+-..+.+.|++++|.+.|++..+.. | .+...|..+-..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-------------------------------~~~~~~~~~a~~~~ 51 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--P-------------------------------EESKYWLMKGKALY 51 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--C-------------------------------CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--c-------------------------------CCHHHHHHHHHHHH
Confidence 44556667777778888888888877765431 1 12344556666677
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHhcc-CChHHHHHHHHHHHHh
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKP--NAVTLVNVLTARARA-RDLRTVKRVHKCVDES 224 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~ 224 (323)
..| ++++|.+.|++..... .. +...+..+...+... |+.++|.+.++...+.
T Consensus 52 ~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 52 NLE---RYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTT---CHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred Hcc---CHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 777 5678888887776643 22 466777777788888 8888888888877665
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.16 E-value=0.0045 Score=53.92 Aligned_cols=100 Identities=10% Similarity=-0.062 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC--------------hHHHHHHHHHHhccCChHHHHHHHHHH
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN--------------AVTLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
+...|..+-..|.+.| ++++|++.|++.....-... ...|..+-.++.+.|++++|...++..
T Consensus 146 ~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEG---KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566788888899999 77999999999887542211 489999999999999999999999999
Q ss_pred HHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 222 DESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 222 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+.. +-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8874 336788899999999999999999999998754
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.14 E-value=0.01 Score=50.31 Aligned_cols=160 Identities=11% Similarity=-0.051 Sum_probs=108.4
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 040801 44 LVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTI----YTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 44 i~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
+..+...++++.|..+++...+... ..++. ..+..+-..+...|++++|++.|++....
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE-----------------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC-----------------CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc-----------------CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 4445556666666666666654321 01221 12344666777788999999999999874
Q ss_pred CCC-CCc----ccHHHHHHHhcchhh---HHHHHHHHHH----c-CCCCc-hHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 040801 120 GLI-PDR----FMFPSLFKSCADIYV---EKQLHSQAIK----F-GLASD-SFLHNTLINMYSSCWCLDQPDEAIKIFYR 185 (323)
Q Consensus 120 g~~-p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~~~ 185 (323)
... ++. .+|+.+-..+...|+ |...++...+ . +..+. ..+|..+-..|.+.| ++++|.+.+++
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~A~~~~~~ 221 (293)
T 3u3w_A 145 QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNK 221 (293)
T ss_dssp CCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh---HHHHHHHHHHH
Confidence 332 222 257777777877777 8888877763 2 22222 347889999999999 77999999988
Q ss_pred HHHc----CCCCC-hHHHHHHHHHHhccCC-hHHHHHHHHHHHH
Q 040801 186 MEIE----NVKPN-AVTLVNVLTARARARD-LRTVKRVHKCVDE 223 (323)
Q Consensus 186 m~~~----g~~p~-~~t~~~li~~~~~~~~-~~~a~~~~~~m~~ 223 (323)
.... +..+. ..+|..+-..+.+.|+ .++|...+++..+
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7642 22222 5688888888889994 6999988888754
No 144
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.06 E-value=0.0065 Score=46.01 Aligned_cols=134 Identities=9% Similarity=-0.074 Sum_probs=72.4
Q ss_pred hCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChH
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPD 177 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 177 (323)
+.|++++|++.+...... .| +...+-.+-..|.+.|+ |.+.++...+.. .-+..+|..+-.+|.+.| +++
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~---~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE---NTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---chH
Confidence 345566666666554332 12 22334445555555555 666666666553 224556666666666666 556
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHH-HHHHHHhCCcc-ChhhHHHHHHHHHhcC
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRV-HKCVDESGFWS-HVELKTTLMDAYCKCK 244 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~g 244 (323)
+|+..|++..+.. +-+...|..+-..+.+.|+.+++... +++..+. .| +...|...-..+.+.|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 7777776666533 12455666666666666666554433 4555543 23 3444554444444444
No 145
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.044 Score=48.77 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=133.9
Q ss_pred HHhhcCCCchHHHHHHHHHHHhcCCCCC-ccch----hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 040801 45 VSLEKCSTMRELKQIHAQMLRTSLFFDP-CADY----HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQ 119 (323)
Q Consensus 45 ~~~~~~~~~~~a~~i~~~m~~~~~~~~~-y~~~----~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 119 (323)
..+.+.|++++|.+.+....+..-.... +... ...+. -...+..+...|.+.|++++|.+++......
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNE-------QETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHH-------HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhh-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3466779999999999998876432222 1111 11110 1124678899999999999999999887542
Q ss_pred -CCCCCccc---HHHHHHHhc-chhh---HHHHHHHHH----HcCCCCc-hHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 040801 120 -GLIPDRFM---FPSLFKSCA-DIYV---EKQLHSQAI----KFGLASD-SFLHNTLINMYSSCWCLDQPDEAIKIFYRM 186 (323)
Q Consensus 120 -g~~p~~~t---y~~ll~~~~-~~~~---a~~~~~~m~----~~g~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~~~m 186 (323)
+-.++..+ ....+..+. ..|+ +..++.... +.+..+. ..++..|...|...| ++++|.+++++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK---QYKDSLALINDL 161 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc---ChHHHHHHHHHH
Confidence 11222211 122222222 2232 555555543 3343333 567888999999999 679999999988
Q ss_pred HHc--CC--CC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCc-c-C--hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 187 EIE--NV--KP-NAVTLVNVLTARARARDLRTVKRVHKCVDES--GFW-S-H--VELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 187 ~~~--g~--~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
... +. .+ ...+|..+.+.|...|++++|..+++...+. .+. | . ...+..+...+...|++++|...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 653 21 12 2458888999999999999999999988642 222 1 1 34567777788899999999888876
Q ss_pred cc
Q 040801 256 ML 257 (323)
Q Consensus 256 m~ 257 (323)
..
T Consensus 242 a~ 243 (434)
T 4b4t_Q 242 SF 243 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.06 E-value=0.0037 Score=49.30 Aligned_cols=135 Identities=6% Similarity=-0.105 Sum_probs=94.6
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHc----CCC
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV----QGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKF----GLA 154 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~ 154 (323)
......++.+-..+...|++++|.+.+++..+ .|..| ...++..+-..+...|+ |.+.++...+. +-.
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence 34567788888999999999999999998765 22222 23455555566666666 66666665443 322
Q ss_pred C--chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc---CCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 155 S--DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE---NVKPN--AVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 155 ~--~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~---g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+ ....+..+-..+...| ++++|.+.+++.... .-.+. ..++..+-..+...|+.++|...+++..+.
T Consensus 103 ~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFG---DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2 2456788888999999 679999999887642 11122 234677788888999999999998887653
No 147
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.04 E-value=0.00084 Score=48.53 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 252 (323)
++++|+..|++....+ -+-+...+..+-..+...|++++|...+++..+.. +-+...+..+-.+|.+.|+.++|...
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5578888888887643 12245677778888888899999999999888764 22466777888888999999999998
Q ss_pred HHhccCC-CCchhhhHHHhhh
Q 040801 253 FVKMLFP-WNNYGQWAMSATV 272 (323)
Q Consensus 253 ~~~m~~~-~~~~~~~~~~~~~ 272 (323)
+++..+. +.++....+..++
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHH
Confidence 8887654 3334333333333
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.01 E-value=0.019 Score=41.42 Aligned_cols=90 Identities=10% Similarity=-0.077 Sum_probs=72.4
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC----hhhHH
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA----VTLVNVLTARARARDLRTVKRVHKCVDESGFWSH----VELKT 234 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~ 234 (323)
+-..+...| ++++|.+.|++..... |+. ..+..+-..+...|++++|...++...+.. |+ ...+.
T Consensus 8 ~a~~~~~~~---~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (129)
T 2xev_A 8 VAFDALKNG---KYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHH
T ss_pred HHHHHHHhC---CHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHH
Confidence 445667778 7799999999988754 332 477778888999999999999999998764 33 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.+-.+|.+.|+.++|...|++..+.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999999998764
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.93 E-value=0.11 Score=44.46 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=148.4
Q ss_pred hhhHHHhhcCCC-chHHHHHHHHHHHhcCCCCC-------------cc--ch-hHHHhcccCC---CCChhhHHHHHHHH
Q 040801 41 HFCLVSLEKCST-MRELKQIHAQMLRTSLFFDP-------------CA--DY-HVRLVFSQIS---NPTIYTCNSIVRGY 100 (323)
Q Consensus 41 ~~li~~~~~~~~-~~~a~~i~~~m~~~~~~~~~-------------y~--~~-~a~~lf~~m~---~~~~~~~~~li~~~ 100 (323)
...+.+..+.+. .++|+.+.+.+... .|+. -. .. ++.+.++.+. +.+...|+.--..+
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 344444445554 57899999999876 4555 11 22 5566665554 55667777654444
Q ss_pred ----HhC---CChHHHHHHHHHHHHCCCCCCcccHHHH---HHHhcchh--hHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 101 ----TNK---NLHHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIY--VEKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 101 ----~~~---g~~~~A~~~~~~m~~~g~~p~~~ty~~l---l~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
.+. +++++++++++.+.+.. +-|..+|+.- +..+..-. ++.+.+..+.+... -|-..|+.--..+.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 455 78999999999998742 2344444433 44444444 47778888887653 45666776555555
Q ss_pred hcCCC---CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCh-HHHHHHHHHHHHhC--CccChhhHHHHHHHHHh
Q 040801 169 SCWCL---DQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL-RTVKRVHKCVDESG--FWSHVELKTTLMDAYCK 242 (323)
Q Consensus 169 ~~g~~---~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~-~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~ 242 (323)
+.|.. ..++++++.+++...... -|...|+-.-..+.+.|+. +.+..+...+.+.+ -..+...+..+.+.|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 55520 016899999999988763 4788888877777777763 33555666554432 13367889999999999
Q ss_pred cCCHHHHHHHHHhccC--CCCchhhhHHH
Q 040801 243 CKFVSRAWDLFVKMLF--PWNNYGQWAMS 269 (323)
Q Consensus 243 ~g~~~~a~~~~~~m~~--~~~~~~~~~~~ 269 (323)
.|+.++|.++++.+.+ .++....|.+.
T Consensus 271 ~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 271 QKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999985 35666777543
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.87 E-value=0.0083 Score=43.17 Aligned_cols=110 Identities=5% Similarity=-0.024 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..|..+-..+...|++++|.+.|++..+.. |+ +...+..+-..|...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~la~~~~~~ 51 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PT-------------------------------NMTYITNQAAVYFEK 51 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-------------------------------cHHHHHHHHHHHHHh
Confidence 456777778888888888888888876532 21 123444555555566
Q ss_pred CCCCChHHHHHHHHHHHHcCC--CCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENV--KPN----AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~--~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
| ++++|...|++...... .++ ..+|..+-..+...|++++|...++...+.. |+......+-.
T Consensus 52 ~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 52 G---DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp T---CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 6 45666666666655321 112 5556666666666677777777766666542 34444444433
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.86 E-value=0.042 Score=38.39 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
...|..+-..+...|++++|.+.|++.... .|+ +...+..+-..|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~~a~~~~~ 50 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPH-------------------------------NHVLYSNRSAAYAK 50 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-------------------------------cHHHHHHHHHHHHh
Confidence 455677777888888888888888887653 121 23344445555555
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.| ++++|.+.+++..... ..+...+..+...+...|++++|...++...+.
T Consensus 51 ~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 51 KG---DYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hc---cHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 56 4566666666665543 224555666666666666666666666666543
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.79 E-value=0.083 Score=44.52 Aligned_cols=128 Identities=10% Similarity=-0.095 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHhcchhh---HHHHHHHHHHc----CCCC--chH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLI-PD----RFMFPSLFKSCADIYV---EKQLHSQAIKF----GLAS--DSF 158 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~ty~~ll~~~~~~~~---a~~~~~~m~~~----g~~~--~~~ 158 (323)
+..+-..+...|++++|++.+++..+.... .+ ..+|+.+-..|...|+ |...++...+. +-.+ ...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 344556678889999999999987653211 12 2367777777777777 88888877622 2112 225
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHhccCChHHH-HHHHHHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIE----NVKP-NAVTLVNVLTARARARDLRTV-KRVHKCVDE 223 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a-~~~~~~m~~ 223 (323)
+|+.+-..|.+.| ++++|++.+++.... +... -..+|..+-..+.+.|+.++| ...+++..+
T Consensus 198 ~~~nlg~~y~~~~---~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 198 VRYNHAKALYLDS---RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHh---hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8889999999999 779999999887642 1111 257888888999999999999 777777653
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.76 E-value=0.011 Score=50.03 Aligned_cols=187 Identities=9% Similarity=-0.061 Sum_probs=109.6
Q ss_pred hhhhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 39 QAHFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
.+..+-..+.+.|+++.|...++...+.. +.+...|..+-..|.+.|++++|.+.+++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-------------------PLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45556667778888888888888888764 34667788888888888888888888888765
Q ss_pred CCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCch-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC
Q 040801 119 QGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDS-FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP 193 (323)
Q Consensus 119 ~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p 193 (323)
. .| +...+..+-.++...|+ |...++...+.. |+. ..+...+....+.. ++.. +......-...
T Consensus 67 ~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~ 135 (281)
T 2c2l_A 67 L--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA------KKKR-WNSIEERRIHQ 135 (281)
T ss_dssp S--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH------HHHH-HHHHHHTCCCC
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH------HHHH-HHHHHHHHHhh
Confidence 4 33 34556666666666666 777776665432 211 11112222222211 1111 12222222333
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccCh-hhHHHHHHHHHhc-CCHHHHHHHHHhccCC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHV-ELKTTLMDAYCKC-KFVSRAWDLFVKMLFP 259 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 259 (323)
+.... ..+..+. .|+.++|...++...+. .|+. .....+-..+.+. +.+++|.++|++..+.
T Consensus 136 ~~~i~-~~l~~l~-~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 136 ESELH-SYLTRLI-AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCHHH-HHHHHHH-HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hHHHH-HHHHHHH-HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33333 3333332 57777777777665543 4543 3334444445555 6788999999988764
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.75 E-value=0.023 Score=48.03 Aligned_cols=113 Identities=13% Similarity=-0.084 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhccCChHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN--AVTLVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~ 218 (323)
|.++++.+...+ |+....-.+-..+.+.+ ++++|+..|+...... .|. ...+..+=.++...|++++|...|
T Consensus 121 A~~~l~~~~~~~--p~~~~~~~~a~l~~~~~---r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l 194 (282)
T 4f3v_A 121 AMEALEAAPVAG--SEHLVAWMKAVVYGAAE---RWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRL 194 (282)
T ss_dssp HHHHHTSSCCTT--CHHHHHHHHHHHHHHTT---CHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHHHcC---CHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666665533 54434444445677777 6689999997443211 111 235666777888999999999999
Q ss_pred HHHHHhCCccC--hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 219 KCVDESGFWSH--VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 219 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
++.......|. .......-.++.+.|+.++|..+|+++...
T Consensus 195 ~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 195 TEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 98875443253 234555666788899999999999999875
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.74 E-value=0.064 Score=40.74 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
+...|..+-..+.+.|++++|++.|++..+. .|+ +...|..+-.+|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-------------------------------~~~~~~~l~~~~~ 56 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APA-------------------------------NPIYLSNRAAAYS 56 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-------------------------------CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-------------------------------CHHHHHHHHHHHH
Confidence 4456677777888888888888888776652 121 3556777778888
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+.| ++++|++.|++..... .-+...|..+-..+...|++++|...|++..+.
T Consensus 57 ~~g---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 57 ASG---QHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hcc---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888 6689999998887754 335778888888899999999999999988775
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.73 E-value=0.023 Score=47.90 Aligned_cols=92 Identities=8% Similarity=-0.129 Sum_probs=53.5
Q ss_pred HHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 040801 128 FPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTA 204 (323)
Q Consensus 128 y~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 204 (323)
+..+-..+.+.|+ |...+....+.. ..+...|..+-.+|.+.| ++++|++.+++..... .-+...+..+-.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQ---QPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444444555 666666665543 124556666666666666 5567777666665432 2244566666666
Q ss_pred HhccCChHHHHHHHHHHHHh
Q 040801 205 RARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~ 224 (323)
+...|++++|...++...+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66677777777766666543
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.72 E-value=0.01 Score=44.31 Aligned_cols=137 Identities=11% Similarity=-0.044 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
.++..+-..|...|++++|.+.+++..+..-. .++. ..-..++..+-..|...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~------------~~~~~~~~~l~~~~~~~ 62 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------------FGDK------------AAERIAYSNLGNAYIFL 62 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTCH------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---------------hCCc------------hHHHHHHHHHHHHHHHc
Confidence 45677777888899999999999887642100 0000 00124566777778888
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCcc-ChhhHHHHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIE----NVKP-NAVTLVNVLTARARARDLRTVKRVHKCVDES----GFWS-HVELKTTLMDAY 240 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~ 240 (323)
| ++++|.+.+++.... +-.+ ....+..+-..+...|++++|...+++..+. +-.+ ....+..+-..|
T Consensus 63 g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 63 G---EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 8 668888888876542 1111 2567888888888999999999888887643 2111 245677888889
Q ss_pred HhcCCHHHHHHHHHhcc
Q 040801 241 CKCKFVSRAWDLFVKML 257 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~ 257 (323)
...|+.++|.+.+++..
T Consensus 140 ~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 99999999999988754
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.70 E-value=0.011 Score=44.10 Aligned_cols=129 Identities=14% Similarity=-0.006 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC---CC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHhC----Cc
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV---KP--NAVTLVNVLTARARARDLRTVKRVHKCVDESG----FW 227 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~---~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~ 227 (323)
..++..+-..|...| ++++|.+.+++.....- .+ -..++..+-..+...|++++|...++...+.. -.
T Consensus 9 ~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 567888888899999 67999999988765311 11 12588889999999999999999999986532 11
Q ss_pred c-ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCchh-hhHHHhhhccCCCCCcchhhhhhh
Q 040801 228 S-HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNNYG-QWAMSATVGPQGLVGRHSTAHQIS 288 (323)
Q Consensus 228 p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~~~~~~~~~~~~~~a~~l~ 288 (323)
+ ....+..+-..|...|++++|.+.+++..+. +..+. .+.+...-..+...|+.++|...+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1 1456778888999999999999999887532 22221 223333333444456666665543
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.07 Score=39.16 Aligned_cols=104 Identities=9% Similarity=-0.106 Sum_probs=71.9
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
..+...|..+-..+.+.|++++|.+.|++..+. .|+.. .....|..+-..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~----------------------------~~~~~~~~~a~~ 74 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQ----------------------------DQAVLHRNRAAC 74 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHH----------------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccch----------------------------HHHHHHHHHHHH
Confidence 446677888888999999999999999988764 34310 013445556666
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
|...| ++++|.+.+++..... ..+...+..+-..+...|+.++|...+++..+.
T Consensus 75 ~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 75 HLKLE---DYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHc---cHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66766 5577777777766543 224566667777777777888887777777665
No 160
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.64 E-value=0.048 Score=39.78 Aligned_cols=96 Identities=10% Similarity=0.022 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
.|...=..|.+.|++++|++.|++..+. .| .+...|..+-.+|.+.|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p-------------------------------~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DP-------------------------------ENAILYSNRAACLTKLM 61 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-------------------------------CCHHHHHHHhhHHHhhc
Confidence 3444555677788888888887776542 12 23445566666677777
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
++++|++.|++....+ ..+...|..+-.++...|++++|...|++..+.
T Consensus 62 ---~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 62 ---EFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5577777777776643 235567777777777777777777777777665
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.085 Score=46.88 Aligned_cols=184 Identities=10% Similarity=-0.062 Sum_probs=118.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-Cc---------------ccHHHHHHHhcchhh---HHHHHHHHHHc-CCCCch
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIP-DR---------------FMFPSLFKSCADIYV---EKQLHSQAIKF-GLASDS 157 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~---------------~ty~~ll~~~~~~~~---a~~~~~~m~~~-g~~~~~ 157 (323)
+.+.+.|++++|.+.|.+..+..-.. +. ..+..+...|.+.|+ +.+.+....+. +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678899999999999987643221 11 126777888888888 77777666543 222222
Q ss_pred HH---HHHHHHH-HHhcCCCCChHHHHHHHHHHHH----cCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 158 FL---HNTLINM-YSSCWCLDQPDEAIKIFYRMEI----ENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 158 ~~---~~~li~~-~~~~g~~~~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
.+ ...++.. +...| +.+++.+++++... .+..+. ..++..+...+...|++++|..++..+...-...
T Consensus 92 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPD---SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHHHHHHCSCCS---CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 22 2222222 22334 67899999887754 233333 4577888999999999999999999986532111
Q ss_pred -----ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCchhhh--HHHhhhccCCCCCcchhh
Q 040801 229 -----HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP----WNNYGQW--AMSATVGPQGLVGRHSTA 284 (323)
Q Consensus 229 -----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~--~~~~~~~~~~~~~~~~~a 284 (323)
....|..++..|...|++++|..++++.... +.++... .+......+...++..+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2457888999999999999999999887532 2222221 333333344455666655
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.61 E-value=0.051 Score=42.81 Aligned_cols=98 Identities=15% Similarity=-0.028 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-CCC--------------hHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV-KPN--------------AVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~-~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
..+..+-..+.+.| ++++|++.|++.....- .|+ ...|..+-.++...|++++|...++...
T Consensus 39 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 39 FDIKEEGNEFFKKN---EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44566666777778 66899999988876321 111 2677788888888999999999999888
Q ss_pred HhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 223 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.. +.+...+..+-.+|...|++++|...|++..+.
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 763 335677888888899999999999999887643
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.59 E-value=0.029 Score=42.67 Aligned_cols=99 Identities=12% Similarity=-0.083 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc--------C---------CCCChHHHHHHHHHHhccCChHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE--------N---------VKPNAVTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~--------g---------~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
...+...=..+.+.| ++++|++.|.+.... . -.-+...|..+-.++.+.|++++|...++
T Consensus 11 a~~~~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 11 VEALRQKGNELFVQK---DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345666677788888 679999999887664 0 01234688888999999999999999999
Q ss_pred HHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 220 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...+.. +-+...|..+-.+|...|++++|...|++..+.
T Consensus 88 ~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 998874 335778888999999999999999999988764
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.58 E-value=0.037 Score=43.64 Aligned_cols=148 Identities=14% Similarity=0.000 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
...+..+=..+.+.|++++|.+.|++..+.. |+...+... ....-. .. ....+|..+-.+|.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-----~~~~~~---~~-------~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-----ILLDKK---KN-------IEISCNLNLATCYNK 100 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----HHHHHH---HH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----hHHHHH---HH-------HHHHHHHHHHHHHHH
Confidence 4567777788899999999999999987632 221111100 000000 00 024677888888999
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
.| ++++|++.+++..... ..+...|..+-.++...|++++|...++...+.. +-+...+..+...+.+.|+.+++
T Consensus 101 ~~---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 101 NK---DYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred hc---CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 89 7799999999988754 3467888889999999999999999999998763 22566777777788887777777
Q ss_pred H-HHHHhccCC
Q 040801 250 W-DLFVKMLFP 259 (323)
Q Consensus 250 ~-~~~~~m~~~ 259 (323)
. ..+..|...
T Consensus 176 ~~~~~~~~f~~ 186 (198)
T 2fbn_A 176 DKLTFGGMFDK 186 (198)
T ss_dssp -----------
T ss_pred HHHHHHHHhcc
Confidence 6 555555443
No 165
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.56 E-value=0.016 Score=41.22 Aligned_cols=79 Identities=8% Similarity=-0.137 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
++++.|++..... ..+...+..+-..+...|++++|...+++..+.. +.+...|..+-.+|.+.|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666666665533 2355677777777778888888888888877653 2245567777777888888888888887765
Q ss_pred C
Q 040801 258 F 258 (323)
Q Consensus 258 ~ 258 (323)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 166
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0032 Score=44.28 Aligned_cols=62 Identities=11% Similarity=-0.051 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
..|..+-..+.+.| ++++|++.|++..... +.+...|..+-.++.+.|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQG---LYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555555 4455555555554432 22344555555555555555555555555544
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.46 E-value=0.0048 Score=56.65 Aligned_cols=117 Identities=15% Similarity=-0.052 Sum_probs=78.2
Q ss_pred hcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCh
Q 040801 135 CADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211 (323)
Q Consensus 135 ~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 211 (323)
+.+.|+ |.+.++...+.. .-+...|..+-.+|.+.| ++++|++.+++..+.. .-+...|..+-.++...|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344455 778888777764 224777888888888888 6688888888887753 23567788888888888888
Q ss_pred HHHHHHHHHHHHhCCccChhhHHHHHHH--HHhcCCHHHHHHHHHhcc
Q 040801 212 RTVKRVHKCVDESGFWSHVELKTTLMDA--YCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 212 ~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~ 257 (323)
++|...+++..+.. +-+...+..+-.+ +.+.|++++|.+.+++-.
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 88888888887753 1133444444444 777888888888877643
No 168
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.45 E-value=0.26 Score=45.20 Aligned_cols=176 Identities=11% Similarity=-0.051 Sum_probs=111.2
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcC---------CCC--
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFG---------LAS-- 155 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g---------~~~-- 155 (323)
+.+...|-..+.-+.+.|++++|.++|++-... |+....-.....+.+.++ +++.+.+.- ..+
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH---HHHHHHHHTC----------CHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH---HHHHHHHHHHhhccchhhhhccc
Confidence 445677888888889999999999999999887 655433222111111122 122322210 011
Q ss_pred -chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHH--HHHHHHhccCChHHHHHHHHHHHHhCCccChhh
Q 040801 156 -DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV--NVLTARARARDLRTVKRVHKCVDESGFWSHVEL 232 (323)
Q Consensus 156 -~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 232 (323)
...+|-..+..+.+.+ +.+.|.++|+.....+ .+...|. +.+...+ .++.+.|..+|+...+.- .-+...
T Consensus 284 ~~~~lw~~y~~~~~r~~---~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~ 356 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKR---GLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLL 356 (493)
T ss_dssp HHHHHHHHHHHHHHHHH---CHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHH
Confidence 1345667777776777 5699999999882222 2334443 3333322 337999999999998753 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh-HHHhhhccCCCC
Q 040801 233 KTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW-AMSATVGPQGLV 278 (323)
Q Consensus 233 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~~~~~ 278 (323)
+...++...+.|+.++|..+|+...+ ....| .+...-..+|..
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCH
Confidence 67788888899999999999999854 35556 555555555543
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.37 E-value=0.03 Score=50.92 Aligned_cols=99 Identities=9% Similarity=-0.103 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC--------------hHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN--------------AVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
...|..+-..|.+.| ++++|++.|++.....-... ...|..+-.++.+.|++++|...+++..
T Consensus 268 a~~~~~~G~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGG---KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445666777778878 66888888887766321111 4777788888888888888888888887
Q ss_pred HhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 223 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.. +-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 763 225667777788888888888888888887664
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.34 E-value=0.021 Score=52.35 Aligned_cols=116 Identities=8% Similarity=-0.025 Sum_probs=77.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCC
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIP-DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCL 173 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 173 (323)
..+.+.|++++|.+.|++..+. .| +..+|..+-.++.+.|+ |.+.++...+.. .-+...|..+-.+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g-- 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG-- 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT--
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--
Confidence 3456778899999999887664 33 35677777777777777 888888877764 234677888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHH--HhccCChHHHHHHHHH
Q 040801 174 DQPDEAIKIFYRMEIENVKPNAVTLVNVLTA--RARARDLRTVKRVHKC 220 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--~~~~~~~~~a~~~~~~ 220 (323)
++++|.+.|++..+..- -+...+..+-.+ +.+.|++++|...+++
T Consensus 89 -~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 -KFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp -CHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred -CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66899999988876431 133344444444 6777888888777665
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.34 E-value=0.071 Score=38.75 Aligned_cols=101 Identities=11% Similarity=-0.026 Sum_probs=71.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
..+...|..+-..+.+.|++++|.+.|++..+.. |+ +...|..+-.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~l~~~ 52 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-------------------------------VAVYYTNRALC 52 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cC-------------------------------cHHHHHHHHHH
Confidence 4456677777778888888888888887766531 21 24456667777
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
|...| ++++|...|++..... ..+...+..+-..+...|++++|...++...+.
T Consensus 53 ~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 53 YLKMQ---QPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc---CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777 6688888888777654 235667777778888888888888888887654
No 172
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.32 E-value=0.043 Score=41.68 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 225 (323)
+...|..+-.+|...| ++++|++.|++..... +-+...|..+-.++...|++++|...|+...+..
T Consensus 69 ~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKE---QFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566777778888888 6688888888887754 2356777778888888888888888888887763
No 173
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.078 Score=38.10 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..|..+=..+.+.|++++|.+.|++..+. .|+ +...|..+-.+|.+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~-------------------------------~~~~~~~~a~~~~~~ 51 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE-------------------------------DARGYSNRAAALAKL 51 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-------------------------------ChHHHHHHHHHHHHh
Confidence 34555666777888888888888776553 122 235566666667777
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
| ++++|++.|++..... .-+...|..+-.++...|++++|...+++..+.
T Consensus 52 ~---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 52 M---SFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp T---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c---CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 7 5577777777776643 234566777777777777777777777777654
No 174
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.22 E-value=0.017 Score=53.15 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-----C-CCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHH-----h
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE-----N-VKPN-AVTLVNVLTARARARDLRTVKRVHKCVDE-----S 224 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~-----g-~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~ 224 (323)
..+++.|...|...| ++++|..++++...- | -.|+ ..+++.|-..|...|++++|+.++++..+ .
T Consensus 351 a~~~~nLa~~y~~~g---~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 351 LRLLSIASEVLSYLQ---AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999 669999998887541 2 1233 36899999999999999999999998864 2
Q ss_pred CCc-c-ChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 225 GFW-S-HVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 225 g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
|-. | ...+.+.|-.++...|.+++|+.+++.++++
T Consensus 428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2 2445567777888999999999999999764
No 175
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.16 E-value=0.072 Score=39.44 Aligned_cols=97 Identities=7% Similarity=-0.071 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..+..+-..+.+.|++++|.+.|++.... .| .+...|..+-.+|.+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p-------------------------------~~~~~~~~lg~~~~~~ 65 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DH-------------------------------YDARYFLGLGACRQSL 65 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CC-------------------------------ccHHHHHHHHHHHHHH
Confidence 44455556677777777777777665542 12 1334455566666677
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
| ++++|++.|++..... +-+...+..+-.++...|++++|...++...+.
T Consensus 66 g---~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 66 G---LYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp T---CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h---hHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7 5577777777776644 234556666777777777777777777777654
No 176
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.16 E-value=0.058 Score=40.56 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
+...+..+-..+.+.|++++|.+.|++.... .| .+...|..+-.+|.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p-------------------------------~~~~~~~~lg~~~~ 66 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DH-------------------------------YDSRFFLGLGACRQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------------------------TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--Cc-------------------------------ccHHHHHHHHHHHH
Confidence 3344555556666777777777766655432 11 23455666666777
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
..| ++++|++.|++..... +-+...|..+-.++...|++++|...++...+.
T Consensus 67 ~~g---~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 67 AMG---QYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTT---CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh---hHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777 6688888888877644 235567777778888888888888888887664
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.14 E-value=0.039 Score=47.98 Aligned_cols=96 Identities=10% Similarity=-0.119 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH------------------HHHHHHHHHhccCChHHHHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV------------------TLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~------------------t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
..+..+-..+.+.| ++++|...|++.... .|+.. .|..+-.++.+.|++++|...++
T Consensus 180 ~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 180 DRRKMDGNSLFKEE---KLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHTCSSS---CCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33556666666777 558888888876653 34433 78888899999999999999999
Q ss_pred HHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 220 CVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 220 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...+.. +-+...|..+-.+|...|++++|...|++..+.
T Consensus 255 ~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 255 IVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998763 235778889999999999999999999998765
No 178
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.10 E-value=0.1 Score=34.66 Aligned_cols=63 Identities=21% Similarity=0.037 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
..+..+-..|...| ++++|.+.|++..... ..+...+..+-..+...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQG---DYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455555555555 4466666666555432 223445555555556666666666666655544
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.09 E-value=0.073 Score=48.34 Aligned_cols=147 Identities=11% Similarity=-0.028 Sum_probs=105.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHHHHHHHHHH
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFLHNTLINMY 167 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~ 167 (323)
....|..+=..|.+.|++++|.+.|++..+. .|+...+ ..+ ..+ ... .....|..+-.+|
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~~~~~~~----~~~----~~~~~~~nla~~~ 327 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL---------SEKESKA----SES----FLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC---------CHHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC---------ChHHHHH----HHH----HHHHHHHHHHHHH
Confidence 3456778888999999999999999988662 2322111 011 111 111 1246788888999
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVS 247 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 247 (323)
.+.| ++++|++.|++..... .-+...|..+-.+|...|++++|...|++..+.. +-+...+..+-..+.+.|+.+
T Consensus 328 ~~~g---~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 328 LKLR---EYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHhc---CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999 7799999999998764 3467889999999999999999999999998753 225677888888999999988
Q ss_pred HHH-HHHHhccCC
Q 040801 248 RAW-DLFVKMLFP 259 (323)
Q Consensus 248 ~a~-~~~~~m~~~ 259 (323)
++. .++.+|..+
T Consensus 403 ~a~~~~~~~~f~k 415 (457)
T 1kt0_A 403 ERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhh
Confidence 876 456666544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.07 E-value=0.033 Score=39.76 Aligned_cols=80 Identities=9% Similarity=-0.130 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHH
Q 040801 141 EKQLHSQAIKFGL--ASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 141 a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 218 (323)
|...++...+.+. .-+...|..+-..|...| ++++|++.|++..... +-+...+..+-.++...|+.++|...+
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5556666555431 224566788888899989 6799999999988765 235778888889999999999999999
Q ss_pred HHHHHh
Q 040801 219 KCVDES 224 (323)
Q Consensus 219 ~~m~~~ 224 (323)
++..+.
T Consensus 85 ~~al~~ 90 (117)
T 3k9i_A 85 LKIIAE 90 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.017 Score=40.43 Aligned_cols=66 Identities=8% Similarity=-0.195 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 193 PNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
++...+..+-..+...|++++|...++...+.. +.+...|..+-.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888889999999999999999998863 335778888999999999999999999998765
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.02 E-value=0.02 Score=52.56 Aligned_cols=134 Identities=7% Similarity=-0.052 Sum_probs=87.5
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCC---CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQIS---NP-TIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 122 (323)
+...|++++|..++++..+.. .... .| ...+++.|-..|...|++++|..++++..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~---------------~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~---- 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQ---------------EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD---- 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHH---------------TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHhCCCHHHHHHHHHHHHHHH---------------HHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----
Confidence 345566666666666555432 2222 12 346799999999999999999999987653
Q ss_pred CCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH---cCCCCC---h
Q 040801 123 PDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASD-SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI---ENVKPN---A 195 (323)
Q Consensus 123 p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~---~g~~p~---~ 195 (323)
+++..... -.|+ ..+++.|-..|...| ++++|..++++-.. .-..|| +
T Consensus 380 ---------------------i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G---~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 380 ---------------------GYMKLYHH-NNAQLGMAVMRAGLTNWHAG---HIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp ---------------------HHHHHSCT-TCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred ---------------------HHHHHcCC-CCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 22222221 2343 466888889999999 66888888877653 112233 3
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 196 -VTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 196 -~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.+.+.+-.++...+.+++|+.++.++.+.
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666778899999999888653
No 183
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.95 E-value=0.088 Score=44.47 Aligned_cols=134 Identities=7% Similarity=-0.099 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCc----hHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASD----SFLHNTLIN 165 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~----~~~~~~li~ 165 (323)
+-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.++ |...++ +.+-.|+ ...+..+=.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~---~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVK---SAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHT---TGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHH---HhhccCCcccHHHHHHHHHH
Confidence 3456778889999999999999887654 544333223334455555 666665 3332232 235667777
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPN--AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
++...| ++++|++.|++.......|. .......-.++.+.|+.++|..+|+++.... |+...+..|
T Consensus 180 al~~LG---~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLA---LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHTT---CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 889989 77999999998875443364 3355566677889999999999999998863 544444443
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.77 E-value=0.2 Score=38.36 Aligned_cols=97 Identities=13% Similarity=-0.092 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC--------h-----HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN--------A-----VTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~--------~-----~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
...+...-..+.+.| ++++|++.|++-.+- .|+ . ..|+.+-.++.+.|++++|...+++..+
T Consensus 11 a~~~~~~G~~l~~~g---~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAG---EYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555666777888 779999999988763 233 2 3899999999999999999999999987
Q ss_pred h-----CCccC-hhhH----HHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 224 S-----GFWSH-VELK----TTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 224 ~-----g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
. .+.|+ ...| ...=.++.+.|++++|...|++..+
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5 22564 4566 7777899999999999999998764
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.73 E-value=0.068 Score=37.00 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 195 AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 195 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
...+..+-..+...|++++|...|++..+.. +-+...|..+-.+|.+.|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555555442 1134445555555555555555555555543
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.63 E-value=0.24 Score=36.61 Aligned_cols=80 Identities=11% Similarity=-0.108 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHh----cCCH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCK----CKFV 246 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 246 (323)
..++|++.|++-.+.| +...+..|=..|.. .++.++|...+++..+.| +...+..|-..|.. .++.
T Consensus 40 ~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 113 (138)
T 1klx_A 40 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 113 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCH
Confidence 3455666666555543 34444444444444 566666666666666554 34455555555555 5666
Q ss_pred HHHHHHHHhccCCC
Q 040801 247 SRAWDLFVKMLFPW 260 (323)
Q Consensus 247 ~~a~~~~~~m~~~~ 260 (323)
++|.+.|++..+.|
T Consensus 114 ~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 114 KQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665544
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.59 E-value=0.18 Score=35.48 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+...++...+.. ..+...+..+-..|...| ++++|++.|++..... ..+...|..+-..+...|+.++|...++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHE---QFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555543 235678888899999999 7799999999988754 33567888899999999999999999999
Q ss_pred HHHh
Q 040801 221 VDES 224 (323)
Q Consensus 221 m~~~ 224 (323)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.54 E-value=0.41 Score=34.05 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=59.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQ 175 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 175 (323)
+-..+.+.|++++|.+.|++..+.. |+... ....+..+-.+|.+.| +
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~----------------------------~~~~~~~lg~~~~~~~---~ 54 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVY----------------------------TPNALYWLGESYYATR---N 54 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTT----------------------------HHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcc----------------------------cHHHHHHHHHHHHHhc---c
Confidence 4455667777777777777765431 22110 0123444555666677 6
Q ss_pred hHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 176 PDEAIKIFYRMEIENVKPN----AVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+++|.+.|++..... |+ ...+..+-.++...|+.++|...++.+.+.
T Consensus 55 ~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 55 FQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888887776643 22 455666777777888888888888887765
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.39 E-value=0.12 Score=45.63 Aligned_cols=98 Identities=11% Similarity=-0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc--------------CCC-CChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 040801 158 FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE--------------NVK-PNAVTLVNVLTARARARDLRTVKRVHKCVD 222 (323)
Q Consensus 158 ~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~--------------g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 222 (323)
..+..+-..|.+.| ++++|++.|++.... ... -+...|..+-.++.+.|++++|...+++..
T Consensus 224 ~~~~~~g~~~~~~g---~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQ---NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34667777888888 668999988887651 012 245788888889999999999999999988
Q ss_pred HhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 223 ESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 223 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+.. +-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 301 ~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 301 EID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 753 225677888888999999999999999987654
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.35 E-value=0.14 Score=35.39 Aligned_cols=65 Identities=12% Similarity=-0.013 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
+...+..+-..|.+.| ++++|++.|++..+.. .-+...|..+-.++...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHD---NASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667888889999999 7799999999998765 235678889999999999999999999998754
No 191
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.07 E-value=0.23 Score=35.61 Aligned_cols=63 Identities=5% Similarity=-0.092 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
...|..+-.++...| ++++|+..|++..... .-+...+..+-..+...|+.++|...+++..+
T Consensus 51 ~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENE---KDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555 4466666666655533 12445555566666666666666666666554
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.01 E-value=0.15 Score=44.27 Aligned_cols=148 Identities=12% Similarity=0.032 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
...|..+=..+.+.|++++|.+.|++..+. .|+... +...++-.+....+. ...|..+-.+|.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344666777888899999999999987653 343221 122233111112221 2378888899999
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc-ChhhHHHHHHH-HHhcCCHH
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS-HVELKTTLMDA-YCKCKFVS 247 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~-~~~~g~~~ 247 (323)
.| ++++|++.+++..... .-+...|..+-.++...|++++|...|++..+. .| +...+..|... ....+..+
T Consensus 243 ~g---~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 243 LK---RYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp TT---CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred cC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99 5699999999988754 346789999999999999999999999998654 34 34445555444 33456778
Q ss_pred HHHHHHHhccCC
Q 040801 248 RAWDLFVKMLFP 259 (323)
Q Consensus 248 ~a~~~~~~m~~~ 259 (323)
++..+|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888654
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.93 E-value=0.21 Score=44.00 Aligned_cols=137 Identities=9% Similarity=-0.069 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCC-CchHHHHHHHHHHHhc
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLA-SDSFLHNTLINMYSSC 170 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~ 170 (323)
.|..+=..+.+.|++++|.+.|++..+.- ++. -. . .-.+... ... .+..+|..+-.+|.+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~------~~------~--~~~~~~~--~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS------RA------A--AEDADGA--KLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH------HH------H--SCHHHHG--GGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC------cc------c--cChHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 46777778889999999999998876520 000 00 0 0000110 011 2457788888999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHH
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 250 (323)
| ++++|++.+++..+.. .-+...|..+-.++...|++++|...+++..+.. +-+...+..+-..+.+.++.+++.
T Consensus 287 g---~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 S---DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp T---CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7799999999988744 2367788889999999999999999999998763 225667777777787777777765
Q ss_pred H
Q 040801 251 D 251 (323)
Q Consensus 251 ~ 251 (323)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.82 E-value=0.44 Score=34.40 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
.+..+=..+.+.|++++|++.|++..+. .|+ +...|+.+-.+|.+.|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~-------------------------------~~~~~~nlg~~~~~~~ 56 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS-------------------------------NITFYNNKAAVYFEEK 56 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-------------------------------CHHHHHhHHHHHHHhh
Confidence 3445555677778888888888766542 221 2455666777777777
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH
Q 040801 172 CLDQPDEAIKIFYRMEIEN--VKPN----AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK 233 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g--~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 233 (323)
++++|++.|++..... ..++ ..+|..+=..+...|++++|...|++..+. .||..+.
T Consensus 57 ---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 57 ---KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred ---hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6678888887765421 1111 135555666677778888888888877664 3454433
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.82 E-value=0.27 Score=44.26 Aligned_cols=91 Identities=8% Similarity=0.000 Sum_probs=68.1
Q ss_pred HhcCCCCChHHHHHHHHHHHHc---CCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCc---cC-hhhH
Q 040801 168 SSCWCLDQPDEAIKIFYRMEIE---NVKPN----AVTLVNVLTARARARDLRTVKRVHKCVDES---GFW---SH-VELK 233 (323)
Q Consensus 168 ~~~g~~~~~~~a~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~---p~-~~~~ 233 (323)
-+.....++++|+.++++..+. -+.|+ ..+++.|...|...|++++|+.++++..+. -+. |+ ..+|
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3333333778999999877652 22332 368999999999999999999999998642 122 22 4568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 234 TTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 234 ~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+.|-..|...|++++|+.++++..+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 8999999999999999999988754
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.74 E-value=0.42 Score=35.21 Aligned_cols=113 Identities=11% Similarity=-0.033 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCCCChHH
Q 040801 103 KNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLINMYSSC-WCLDQPDE 178 (323)
Q Consensus 103 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~~~~ 178 (323)
.+++++|++.|++-.+.|. |+ .. |=..|..-+. |.++++...+.| +...+..|=..|..- |...+.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3568999999999988873 32 22 3223322222 788888877765 456666676677661 11228899
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCC
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARAR----ARDLRTVKRVHKCVDESGF 226 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 226 (323)
|++.|++-.+.| +...+..|-..|.. .++.++|...+++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998875 56667777777777 8999999999999988874
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.66 E-value=0.19 Score=33.21 Aligned_cols=65 Identities=20% Similarity=0.038 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+...+..+-..+...|++++|...+++..+.. +.+...+..+-..|.+.|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35677778888999999999999999998764 235677888999999999999999999988654
No 198
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.46 E-value=1.5 Score=38.34 Aligned_cols=134 Identities=5% Similarity=-0.035 Sum_probs=83.8
Q ss_pred CCCCcccHHHHHHHhcchhh--------HHHHHHHHHHcCCCCc-hHHHHHHHHHHHh---cCCCCChHHHHHHHHHHHH
Q 040801 121 LIPDRFMFPSLFKSCADIYV--------EKQLHSQAIKFGLASD-SFLHNTLINMYSS---CWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 121 ~~p~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~~~~-~~~~~~li~~~~~---~g~~~~~~~a~~~~~~m~~ 188 (323)
.+.+...|...+++...... |..+|+...+.. |+ ...|..+--+|.- .+.. .......+-..+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~-~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPL-DEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHH
Confidence 45566777777766554322 777777776654 54 2333322222211 1111 11111111111111
Q ss_pred ----cCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 189 ----ENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 189 ----~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..-..+..+|..+-..+...|+++.|...++++.+.+ |+...|..+=..+.-.|+.++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2235677888887777777899999999999999886 77777777777888999999999999887654
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.99 E-value=0.8 Score=41.94 Aligned_cols=76 Identities=8% Similarity=0.065 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
.+.|.++|+.....- .-+...+...++-..+.|+.+.|..+|+++. .....|...++-=.+.|+.+.+..++++
T Consensus 336 ~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 336 RATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 477888887776542 1123344555666667778888888887762 2456677777766677888877777776
Q ss_pred cc
Q 040801 256 ML 257 (323)
Q Consensus 256 m~ 257 (323)
..
T Consensus 410 ~~ 411 (493)
T 2uy1_A 410 KM 411 (493)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.99 E-value=0.36 Score=43.46 Aligned_cols=92 Identities=10% Similarity=-0.051 Sum_probs=71.2
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcC---CCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCc---c-C
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIEN---VKPN----AVTLVNVLTARARARDLRTVKRVHKCVDES---GFW---S-H 229 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~---p-~ 229 (323)
+..+.+.| ++++|++++++..+.. ..|+ ..+++.+...|...|++++|+.++++..+. -+. | .
T Consensus 294 ie~~~~~g---~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 294 IEELKAHW---KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHhhc---cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 45566677 6799999998887531 2332 468999999999999999999999988642 122 2 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 230 VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
..+++.|-..|...|++++|..++++..+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45688899999999999999999998754
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.56 E-value=0.47 Score=32.03 Aligned_cols=56 Identities=7% Similarity=-0.086 Sum_probs=38.5
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV-TLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
..+.+.| ++++|++.|++..... ..+.. .|..+-..+...|++++|...+++..+.
T Consensus 8 ~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQG---DIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHT---CHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455666 5678888887776643 22445 6777777777788888888888877765
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.38 E-value=3.3 Score=35.21 Aligned_cols=196 Identities=3% Similarity=-0.106 Sum_probs=133.5
Q ss_pred CchHHHHHHHHHHHhcCCCCCccch-hHHHhcccCC---CCChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCc
Q 040801 52 TMRELKQIHAQMLRTSLFFDPCADY-HVRLVFSQIS---NPTIYTCNSIVRGYTNKN--LHHEAFLFYHEMIVQGLIPDR 125 (323)
Q Consensus 52 ~~~~a~~i~~~m~~~~~~~~~y~~~-~a~~lf~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~ 125 (323)
++..+...+....+.|- .. +|.++++.+. +-+...||.-=..+...| ++++++++++.+.... +-+.
T Consensus 31 ~y~~~~~~~~a~~~~~e------~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y 103 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEE------YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNY 103 (306)
T ss_dssp HHHHHHHHHHHHHHTTC------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCC
T ss_pred HHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccH
Confidence 45677777777777664 12 6777776655 445566887777777888 9999999999998742 2233
Q ss_pred ccHHHHHHHh----cch---hh---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh
Q 040801 126 FMFPSLFKSC----ADI---YV---EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNA 195 (323)
Q Consensus 126 ~ty~~ll~~~----~~~---~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~ 195 (323)
.+|+.--..+ .+. ++ +.++++.+.+.. .-+-.+|+.---.+.+.|.. +.+++++.++++.+... -|.
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~-~~~~EL~~~~~~i~~d~-~N~ 180 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLH-NDAKELSFVDKVIDTDL-KNN 180 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccc-ChHHHHHHHHHHHHhCC-CCH
Confidence 3444332222 212 22 778888887754 34667777766667777744 12399999999998774 377
Q ss_pred HHHHHHHHHHhccCC------hHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCH-HHHHHHHHhccC
Q 040801 196 VTLVNVLTARARARD------LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV-SRAWDLFVKMLF 258 (323)
Q Consensus 196 ~t~~~li~~~~~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 258 (323)
..|+---..+.+.+. ++++...++.+.+.. +-|...|+.+-..+.+.|+. +++.++.++..+
T Consensus 181 sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 181 SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 788766666666666 778888888887764 34788888888888888874 446667777654
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.34 E-value=1.2 Score=30.26 Aligned_cols=65 Identities=12% Similarity=-0.066 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHhccCC---hHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 193 PNAVTLVNVLTARARARD---LRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 193 p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.|...+..+-.++...++ .++|..++++..+. .|+ ......+-..+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 56777777777665 343 444445555677777777777777777665
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.20 E-value=5.5 Score=34.79 Aligned_cols=139 Identities=7% Similarity=-0.155 Sum_probs=92.9
Q ss_pred CCChhhHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHhcc-------hhh-HHHHHHHHHH--
Q 040801 87 NPTIYTCNSIVRGYTN--KN---LHHEAFLFYHEMIVQGLIPDR-FMFPSLFKSCAD-------IYV-EKQLHSQAIK-- 150 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~ty~~ll~~~~~-------~~~-a~~~~~~m~~-- 150 (323)
+.+...|...+++... .+ ...+|.++|++-.+. .|+- ..|..+--++.- .+. ...+-..+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5577889998876553 23 358899999998773 5653 334433222210 111 2211112211
Q ss_pred -c-CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 151 -F-GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 151 -~-g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
. .-..+..+|..+-..+...| ++++|.+.+++....+ |+...|..+=..+...|+.++|...+++.... .|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~g---d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKG---KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred hcccCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 1 22457788888777777778 7799999999999876 88888877777888999999999999998876 46
Q ss_pred ChhhHH
Q 040801 229 HVELKT 234 (323)
Q Consensus 229 ~~~~~~ 234 (323)
...+|.
T Consensus 342 ~~~t~~ 347 (372)
T 3ly7_A 342 GANTLY 347 (372)
T ss_dssp SHHHHH
T ss_pred CcChHH
Confidence 665553
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.14 E-value=0.38 Score=36.69 Aligned_cols=93 Identities=9% Similarity=-0.129 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCh----------HHHHHHHHHHHHhCCcc-ChhhHHHHHHHHHhc
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL----------RTVKRVHKCVDESGFWS-HVELKTTLMDAYCKC 243 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 243 (323)
.+++|.+.++.-.+.. .-+...|+.+=.++...+++ ++|...|++..+. .| +...|..+=.+|.+.
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHh
Confidence 4578888887777654 33666777666677766554 5888888887776 34 456778888888776
Q ss_pred C-----------CHHHHHHHHHhccCCCCchhhhHHHhhh
Q 040801 244 K-----------FVSRAWDLFVKMLFPWNNYGQWAMSATV 272 (323)
Q Consensus 244 g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 272 (323)
| ++++|.+.|++..+- +|....|..++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4 899999999988764 44444443333
No 206
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.07 E-value=5.5 Score=34.52 Aligned_cols=218 Identities=8% Similarity=-0.028 Sum_probs=129.5
Q ss_pred hhcCCCchHHHHHHHHHHHhcCCCCC----ccc----------h-hHHHhcccCC---CCChhhHHHHHHHHHhC-C-Ch
Q 040801 47 LEKCSTMRELKQIHAQMLRTSLFFDP----CAD----------Y-HVRLVFSQIS---NPTIYTCNSIVRGYTNK-N-LH 106 (323)
Q Consensus 47 ~~~~~~~~~a~~i~~~m~~~~~~~~~----y~~----------~-~a~~lf~~m~---~~~~~~~~~li~~~~~~-g-~~ 106 (323)
+.+....++|+.+.+.+.... |+. +.| . ++.++++.+. +.+...|+.--..+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 344445678999999988763 444 111 1 5555555543 55667787766666665 6 78
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHH---HHHhcchh--------hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCC-
Q 040801 107 HEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADIY--------VEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLD- 174 (323)
Q Consensus 107 ~~A~~~~~~m~~~g~~p~~~ty~~l---l~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~- 174 (323)
++++++++.+.+.. +-|..+|+.- +..+.+.. ++.+....+.+.. .-|...|+..-..+.+.++..
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 88888888887642 2244444432 33334433 3566666666654 346677877777777776320
Q ss_pred ---ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCh--------------------HHHHHHHHHHHHhC-----C
Q 040801 175 ---QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL--------------------RTVKRVHKCVDESG-----F 226 (323)
Q Consensus 175 ---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~--------------------~~a~~~~~~m~~~g-----~ 226 (323)
.++++++.+++..... .-|...|+-+-..+.+.|.. .........+...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 1577888888777654 23666776555555444432 12222222222211 0
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC--CCchhhhHHH
Q 040801 227 WSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP--WNNYGQWAMS 269 (323)
Q Consensus 227 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~ 269 (323)
.++......|.+.|...|+.++|.++++.+.++ ++....|.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 246677788888999999999999999988643 4555666443
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.05 E-value=1.7 Score=41.95 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
.+...|..|-..+.+.| +++.|.+.|..+.+ |..+...+...|+.+...++-+.....| .++
T Consensus 679 ~~~~~W~~la~~al~~~---~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~ 740 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRF---NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFN 740 (814)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHH
T ss_pred CcHhHHHHHHHHHHHcC---CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chH
Confidence 34567777777777777 55777777776642 2234444444556665555554444443 245
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.-..+|.+.|++++|.+++.++.+
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCC
Confidence 555566677777777777777654
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.96 E-value=1.6 Score=32.92 Aligned_cols=81 Identities=14% Similarity=0.009 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccC---ChHHHHHHHHHHHHhCCcc--ChhhHHHHHHHHHhcCCHHHHHH
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARAR---DLRTVKRVHKCVDESGFWS--HVELKTTLMDAYCKCKFVSRAWD 251 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~ 251 (323)
..+.+-|.+....|. ++..+--.+-.++++++ +++++..+++...+.. .| ....+-.|--+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455566666555554 67777667888888888 6778999999988765 24 23334445557799999999999
Q ss_pred HHHhccCC
Q 040801 252 LFVKMLFP 259 (323)
Q Consensus 252 ~~~~m~~~ 259 (323)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988764
No 209
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.72 E-value=3.1 Score=30.88 Aligned_cols=109 Identities=14% Similarity=0.018 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQ------GLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLI 164 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 164 (323)
..+...=..+.+.|++++|.+.|.+-.+. .-.|+...+ ..+. ..+...|..+-
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~~~~----~~~~~~~~nla 70 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------VELD----RKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------HHHH----HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------HHHH----HHHHHHHHHHH
Confidence 34556667888999999999999886542 001111100 1111 12356788888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
.+|.+.| ++++|+..+++..... ..+...|..+-.++...|++++|...++...+.
T Consensus 71 ~~~~~~~---~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 71 QCYLNIG---DLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcC---cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9999999 7799999999988754 346788889999999999999999999998876
No 210
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.59 E-value=3.2 Score=30.75 Aligned_cols=141 Identities=7% Similarity=-0.032 Sum_probs=91.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHH
Q 040801 100 YTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEA 179 (323)
Q Consensus 100 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a 179 (323)
+.-.|.+++..++..+.... -+..-||.+|-.....-+..-+++.+..-|--.|.. .+| +...+
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~---NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQ---NLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCS---CTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhh---cHHHH
Confidence 34568888888888887653 234456666666555555666677776666444433 233 22333
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 180 IKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 180 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
..-+-.+ .-+..-+...|..+...|.-++-.++...+.. .-+|++...-.+-.+|.+.|+..+|.+++.+.-++
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333222 23445566677778888888888888887533 33667777778888888888888888888887777
Q ss_pred CCc
Q 040801 260 WNN 262 (323)
Q Consensus 260 ~~~ 262 (323)
|..
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 644
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.12 E-value=0.76 Score=41.35 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCc-hHHHHHHHHHHHh
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASD-SFLHNTLINMYSS 169 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 169 (323)
.+++.|-..|...|++++|..++++..+ +++..... -.|+ ..+++.|-..|..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~-------------------------i~~~~lG~-~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIK-------------------------PYSKHYPV-YSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHSCS-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH-------------------------HHHHHcCC-CChHHHHHHHHHHHHHHh
Confidence 6799999999999999999999988753 11222111 2343 4568888888888
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 040801 170 CWCLDQPDEAIKIFYRMEI 188 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~ 188 (323)
.| ++++|..++++-.+
T Consensus 395 qg---~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 395 LE---NKAAGEKALKKAIA 410 (433)
T ss_dssp TT---CHHHHHHHHHHHHH
T ss_pred cc---CHHHHHHHHHHHHH
Confidence 88 66888888877643
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=90.84 E-value=10 Score=35.23 Aligned_cols=130 Identities=8% Similarity=-0.060 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccC-ChHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR-DLRTVKRVHK 219 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~ 219 (323)
+.+.++.+.+.. .-+..+|+.---.+.+.|.. +++++++.++++.+... -|...|+---..+.+.| ..+++...++
T Consensus 92 eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~-~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 92 ELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP-NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC-CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc-cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 555566655543 22344555554455555533 45788888888877653 36677776666666666 6777777777
Q ss_pred HHHHhCCccChhhHHHHHHHHHhc--------------CCHHHHHHHHHhccC-CCCchhhhHHHhhhcc
Q 040801 220 CVDESGFWSHVELKTTLMDAYCKC--------------KFVSRAWDLFVKMLF-PWNNYGQWAMSATVGP 274 (323)
Q Consensus 220 ~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~-~~~~~~~~~~~~~~~~ 274 (323)
++.+.. .-|...|+..-..+.+. +.++++.+.+++..+ .+.+...|.|...+-.
T Consensus 169 ~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 169 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp TTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 766543 22556666555555542 456778877776654 4567777865554433
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.72 E-value=0.98 Score=30.35 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=48.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCccChh-hHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 201 VLTARARARDLRTVKRVHKCVDESGFWSHVE-LKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.-..+...|++++|...++...+.. +-+.. .|..+-.+|.+.|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456778899999999999998863 22456 7888889999999999999999998764
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.20 E-value=2.4 Score=29.21 Aligned_cols=65 Identities=14% Similarity=-0.075 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHhC------CccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 194 NAVTLVNVLTARARARDLRTVKRVHKCVDESG------FWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 194 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
+..-+-.|=..+...|++..|...++...+.- -.+....+..|-.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44445566677778888999888888876531 123456788899999999999999999998865
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.02 E-value=6.2 Score=29.66 Aligned_cols=85 Identities=5% Similarity=-0.054 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHhccCChHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP--NAVTLVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~ 218 (323)
+++-|....+.|. ++..+.-.+--++++.+...+.++++.+|++..+.+ .| +...+=.+--++.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4455555555554 677777777778888775545679999999988865 34 2344444666779999999999999
Q ss_pred HHHHHhCCccC
Q 040801 219 KCVDESGFWSH 229 (323)
Q Consensus 219 ~~m~~~g~~p~ 229 (323)
+.+.+. +|+
T Consensus 95 ~~lL~i--eP~ 103 (152)
T 1pc2_A 95 RGLLQT--EPQ 103 (152)
T ss_dssp HHHHHH--CTT
T ss_pred HHHHhc--CCC
Confidence 999886 564
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.51 E-value=2 Score=38.55 Aligned_cols=89 Identities=6% Similarity=-0.044 Sum_probs=49.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC---CCCCCc----ccHHHHHHHhcchhh---HHHHHHHHHHc-----C-CCCc-hH
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQ---GLIPDR----FMFPSLFKSCADIYV---EKQLHSQAIKF-----G-LASD-SF 158 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~ty~~ll~~~~~~~~---a~~~~~~m~~~-----g-~~~~-~~ 158 (323)
.+..+.+.|++++|.+++++..+. -+.|+. .+++.|...|...|+ |+.+++...+. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566777888888888777542 133333 355555556655555 55555544322 2 2332 34
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRME 187 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~ 187 (323)
+++.|-..|...| ++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g---~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQG---MFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 4666666666666 4466666665543
No 217
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.17 E-value=8.3 Score=37.19 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc------CCCCChH------HH-HHHH----H
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE------NVKPNAV------TL-VNVL----T 203 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~------g~~p~~~------t~-~~li----~ 203 (323)
+..+++.+.+..-..+......+|..+.+.++ .--+|.++..+-.+. ...+... .+ ..|+ +
T Consensus 268 a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~--~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 268 TIDYLKGLTKKDPIHDIYYKTAMITILDHIET--KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 77888888776532233333344444444332 113456666554321 1222111 00 1122 3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 204 ARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
-|...|+++.|..+-++....- +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4667899999999999987762 3357899999999999999999999999985
No 218
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.59 E-value=6.2 Score=34.70 Aligned_cols=130 Identities=10% Similarity=0.032 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHH---hCCChHHHHHHHHHHHH--CC-CCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHH
Q 040801 89 TIYTCNSIVRGYT---NKNLHHEAFLFYHEMIV--QG-LIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNT 162 (323)
Q Consensus 89 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~--~g-~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 162 (323)
|...|..++.... ..|+.++|.+.+++... +| .-++...+. .+.. ...-++++. ..+...
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~-w~~~------~r~~l~~~~-------~~a~~~ 176 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ-FVEP------FATALVEDK-------VLAHTA 176 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST-THHH------HHHHHHHHH-------HHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchh-HHHH------HHHHHHHHH-------HHHHHH
Confidence 4445666665433 35888888888887755 23 222221110 0000 001111111 123455
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH-----HhCCccChhhHHHH
Q 040801 163 LINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVD-----ESGFWSHVELKTTL 236 (323)
Q Consensus 163 li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~~~~l 236 (323)
++..+...| +.++++..+....... ..+...|..+|.++.+.|+..+|.+.|+.+. +.|+.|+..+-...
T Consensus 177 ~~~~~l~~g---~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 177 KAEAEIACG---RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 778888888 6689999888887654 4578899999999999999999999998875 46999987764433
No 219
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.54 E-value=2.7 Score=37.10 Aligned_cols=68 Identities=15% Similarity=-0.021 Sum_probs=55.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC-----CCchhhh
Q 040801 198 LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP-----WNNYGQW 266 (323)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~ 266 (323)
...++..+...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|+...+. |.+|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3456677788999999999888887653 447889999999999999999999999998654 7777665
No 220
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=84.34 E-value=11 Score=28.40 Aligned_cols=108 Identities=13% Similarity=-0.091 Sum_probs=75.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWC 172 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 172 (323)
+...=..+.+.|++++|++.|++-.+- .|+...= .++ +.. ..+...|+.+-.++.+.|
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~----~a~----~~~-----------~~~a~a~~n~g~al~~Lg- 71 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPE----EAF----DHA-----------GFDAFCHAGLAEALAGLR- 71 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTT----SCC----CHH-----------HHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcch----hhh----hhc-----------cchHHHHHHHHHHHHHCC-
Confidence 444555678889999999999987652 2321100 000 000 012348899999999999
Q ss_pred CCChHHHHHHHHHHHHc-----CCCCC-hHHH----HHHHHHHhccCChHHHHHHHHHHHHh
Q 040801 173 LDQPDEAIKIFYRMEIE-----NVKPN-AVTL----VNVLTARARARDLRTVKRVHKCVDES 224 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~-----g~~p~-~~t~----~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (323)
++++|+..+++-.+. .+.|+ ...| ...=.++...|++++|...|++..+.
T Consensus 72 --r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 72 --SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 668999999888764 12564 4577 77888999999999999999999753
No 221
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.72 E-value=11 Score=30.49 Aligned_cols=143 Identities=11% Similarity=-0.042 Sum_probs=74.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCcc---cHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH------------HHHH
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLIPDRF---MFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL------------HNTL 163 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~------------~~~l 163 (323)
..+..|+.+ +++.+.+.|..++.. -++.|..++ ..|. .++.+.+.+.|..++... ..+.
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~-~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAA-VYGK-VKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHH-HTTC-HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHH-HhCC-HHHHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 334455543 455555667655432 233443333 2332 345566667776654321 1234
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHc-CCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHH
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIE-NVKPNA---VTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLM 237 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~-g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li 237 (323)
+...++.| +.+ . ++.+.+. |..++. .-.+. +...+..++......+.+.+.+.|..++... -.+.+
T Consensus 152 L~~A~~~~---~~~-~---v~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 152 LMDAAEKG---HVE-V---LKILLDEMGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp HHHHHHHT---CHH-H---HHHHHHTSCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred HHHHHHcC---CHH-H---HHHHHHhcCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 44555555 222 2 3333333 444432 22333 3333445565556677888888888776542 23556
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 040801 238 DAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~ 255 (323)
..-++.|+.+-+..+++.
T Consensus 224 ~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp HHHHHTTCHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 666778888887777774
No 222
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=81.61 E-value=14 Score=27.94 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHhcc-----------CChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 176 PDEAIKIFYRMEIENVKP-NAVTLVNVLTARARA-----------RDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
+++|+..|++-..-. | +..+|..+=.+|... |++++|...|++..+. .|+...|..-+.
T Consensus 62 ~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 357777776666533 3 445666666666655 3777788877777765 466555544333
No 223
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=80.75 E-value=26 Score=29.99 Aligned_cols=170 Identities=8% Similarity=-0.030 Sum_probs=111.0
Q ss_pred HhCCChH-HHHHHHHHHHHCCCCCCccc-HHH---HHHHhcch----------hhHHHHHHHHHHcCCCCchHHHHHHHH
Q 040801 101 TNKNLHH-EAFLFYHEMIVQGLIPDRFM-FPS---LFKSCADI----------YVEKQLHSQAIKFGLASDSFLHNTLIN 165 (323)
Q Consensus 101 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-y~~---ll~~~~~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~ 165 (323)
.+.|.++ +|+++++.+... .|+..| |+. ++....+. .++..+++.+.+.. .-+..+|+.---
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455544 788888888763 344433 221 23333221 11666666666644 235667776666
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc-
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD-LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC- 243 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 243 (323)
.+.+.|.. .+++++++++.+..... -|...|+---..+...|. .+++...++.+.+.. .-|...|+..-..+.+.
T Consensus 117 lL~~l~~~-~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 117 LLSRLPEP-NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHCSSC-CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHS
T ss_pred HHhccCcc-cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhh
Confidence 66666643 46899999999988763 477788777777777777 588888899988765 33666776665555544
Q ss_pred -------------CCHHHHHHHHHhccC-CCCchhhhHHHhhhccCC
Q 040801 244 -------------KFVSRAWDLFVKMLF-PWNNYGQWAMSATVGPQG 276 (323)
Q Consensus 244 -------------g~~~~a~~~~~~m~~-~~~~~~~~~~~~~~~~~~ 276 (323)
+.++++.+.+++... .+.+...|.|...+-...
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 457888888887764 467889998776665444
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=80.59 E-value=11 Score=25.65 Aligned_cols=70 Identities=10% Similarity=-0.187 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc------CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE------NVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
+..-+-.|=..+.+.| +++.|...|++.... +-.+....+..+-.++.+.|+++.|...++++.+. .|+
T Consensus 4 sa~dc~~lG~~~~~~~---~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEA---DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHcc---chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 3444556667777777 779999999887653 11346678888999999999999999999998875 455
Q ss_pred h
Q 040801 230 V 230 (323)
Q Consensus 230 ~ 230 (323)
.
T Consensus 79 ~ 79 (104)
T 2v5f_A 79 H 79 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 225
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=80.22 E-value=28 Score=30.04 Aligned_cols=96 Identities=7% Similarity=-0.145 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChH--------HHHHHHHHHHHhCCccChhhHHHHHHHHHhcCC---
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLR--------TVKRVHKCVDESGFWSHVELKTTLMDAYCKCKF--- 245 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--- 245 (323)
++++++++.+.... .-|...|+---..+.+.|..+ ++....+++.+.. .-|-..|+..-..+.+.|+
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 56666666666543 225555554433333333343 6666667766653 2255666666666666665
Q ss_pred ----HHHHHHHHHhccC-CCCchhhhHHHhhhcc
Q 040801 246 ----VSRAWDLFVKMLF-PWNNYGQWAMSATVGP 274 (323)
Q Consensus 246 ----~~~a~~~~~~m~~-~~~~~~~~~~~~~~~~ 274 (323)
++++.+.+++... .+.+...|.|...+-.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6777777776653 3567777866444433
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=79.72 E-value=26 Score=29.43 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCCCc---hHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc-CCh
Q 040801 141 EKQLHSQAIKFGLASD---SFLHNTLINMYSSC-----WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARA-RDL 211 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-~~~ 211 (323)
+...++...+. .|+ -..|..|-..|.+. | +.++|.+.|++-.+-+-.-+..++...-+.+++. |+.
T Consensus 182 A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gG---d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 182 AVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGG---GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTC---CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCC---CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 55555555554 365 56788999999984 7 7799999999988744222477888888889885 999
Q ss_pred HHHHHHHHHHHHhCCc--cChhhHHHHHH
Q 040801 212 RTVKRVHKCVDESGFW--SHVELKTTLMD 238 (323)
Q Consensus 212 ~~a~~~~~~m~~~g~~--p~~~~~~~li~ 238 (323)
+.+.+.+++..+.... |+....+.+-+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 9999999999987766 77665555443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=79.61 E-value=15 Score=31.00 Aligned_cols=104 Identities=9% Similarity=-0.069 Sum_probs=73.7
Q ss_pred hHHHHHHHH-HHHhc--CCCC---ChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHhc-----cCChHHHHHHHHHHH
Q 040801 157 SFLHNTLIN-MYSSC--WCLD---QPDEAIKIFYRMEIENVKPN---AVTLVNVLTARAR-----ARDLRTVKRVHKCVD 222 (323)
Q Consensus 157 ~~~~~~li~-~~~~~--g~~~---~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~-----~~~~~~a~~~~~~m~ 222 (323)
...|..++. ++... |.+. ...+|...+++..+ +.|+ ...|..+-..|.+ .|+.++|++.|++..
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 455665554 44442 5454 33445555555444 4566 5688888888888 499999999999999
Q ss_pred HhCCccChhhHHHHHHHHHhc-CCHHHHHHHHHhccCCCCc
Q 040801 223 ESGFWSHVELKTTLMDAYCKC-KFVSRAWDLFVKMLFPWNN 262 (323)
Q Consensus 223 ~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~ 262 (323)
+..-.-+..++...-+.|++. |+.++|.+.+++...-+..
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 875322477888888999995 9999999999998876433
No 228
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.57 E-value=15 Score=28.94 Aligned_cols=150 Identities=9% Similarity=-0.066 Sum_probs=80.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcc---cHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhc
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF---MFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSC 170 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~ 170 (323)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+ +..|. .++.+.+.+.|..++... ..+.+...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA-VITTL-PSVVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH-HHcCC-HHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 3555667899998888888887777666543 23333333 33333 345566667777665332 22344555566
Q ss_pred CCCCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh---HHHHHHHHHhcC
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKP---NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL---KTTLMDAYCKCK 244 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g 244 (323)
| +.+-+..+++.....++.+ |..-. +.+...+..|+.+. ++.+.+.|..++... -.+.+..-++.|
T Consensus 90 ~---~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 90 R---SPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp T---CHHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred C---CHHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 6 3233333332221111122 12222 33444445566544 445555676665432 345556667788
Q ss_pred CHHHHHHHHHh
Q 040801 245 FVSRAWDLFVK 255 (323)
Q Consensus 245 ~~~~a~~~~~~ 255 (323)
+.+-+..+++.
T Consensus 162 ~~~~v~~Ll~~ 172 (241)
T 1k1a_A 162 SLSMVQLLLQH 172 (241)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 88877777664
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.49 E-value=15 Score=26.52 Aligned_cols=82 Identities=12% Similarity=-0.100 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHH---HHHHHHHHHHhCCccChhhH-HHHHHHHHhcCCHHHHHHH
Q 040801 177 DEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT---VKRVHKCVDESGFWSHVELK-TTLMDAYCKCKFVSRAWDL 252 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~ 252 (323)
..+.+-|.+-...|. |+..+--.+..+++++++... +..+++.+.+.+-+....-| -.|--++.|.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344555555555554 666665567788888876666 77778877665421123333 3455588999999999999
Q ss_pred HHhccCC
Q 040801 253 FVKMLFP 259 (323)
Q Consensus 253 ~~~m~~~ 259 (323)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 230
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.69 E-value=14 Score=29.82 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=71.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCcc----cHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHH
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF----MFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYS 168 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 168 (323)
+.+...++.|+++... .+.+.|..++.. -++.|. ..+..|+ .++.+.+.+.|..++... ..+.+...+
T Consensus 7 ~~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~-~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLH-NAVQMSR-EDIVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHH-HHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHH-HHHHcCC-HHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 4555666778765444 444556544432 233333 3333343 244556666776654321 223444445
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCccChh------------hHH
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVT--LVNVLTARARARDLRTVKRVHKCVDESGFWSHVE------------LKT 234 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------~~~ 234 (323)
..|. .++++.+.+.|..++... -.+.+...+..|+.+. ++.+.+.|..++.. .-.
T Consensus 81 ~~~~-------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 81 IAGS-------VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHTC-------HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HcCC-------HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 5552 233344445565544321 1133444455566544 44455556555432 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 040801 235 TLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~ 255 (323)
+.+...++.|+.+-+..+++.
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHh
Confidence 345556677888877777765
No 231
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.21 E-value=13 Score=25.80 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 178 EAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
++.+-++.+....+-|+.....+.+++|-+.+|+..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333333444555555555555555555555555555555543
No 232
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=77.81 E-value=32 Score=29.38 Aligned_cols=156 Identities=6% Similarity=-0.093 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHH---HHHhcch--hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHH
Q 040801 106 HHEAFLFYHEMIVQGLIPDRFMFPSL---FKSCADI--YVEKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAI 180 (323)
Q Consensus 106 ~~~A~~~~~~m~~~g~~p~~~ty~~l---l~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~ 180 (323)
+++++++++.+.... +-+..+|+.- +..+.+. .++..++..+.+.. .-|-..|+.---.+...|. ..++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~--~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV--APAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--CHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc--CHHHHH
Confidence 678888888887642 2344444433 3333321 12777888887765 3456667766666666663 148999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhcc--------------CChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhc---
Q 040801 181 KIFYRMEIENVKPNAVTLVNVLTARARA--------------RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKC--- 243 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--- 243 (323)
+.++++..... -|...|+-.-..+.+. +.++++...+....... +-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 99999988764 3777777665555544 34667777777776653 33677777665555555
Q ss_pred --------CCHHHHHHHHHhccCCCCchhhhHH
Q 040801 244 --------KFVSRAWDLFVKMLFPWNNYGQWAM 268 (323)
Q Consensus 244 --------g~~~~a~~~~~~m~~~~~~~~~~~~ 268 (323)
+.++++.+.++++.+--. -+.|.+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~p-d~~w~l 275 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEP-ENKWCL 275 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCc-ccchHH
Confidence 568899999998876421 235643
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.48 E-value=6.6 Score=37.67 Aligned_cols=106 Identities=9% Similarity=-0.058 Sum_probs=63.1
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC-------CccChhhHHHHHH
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-------FWSHVELKTTLMD 238 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-------~~p~~~~~~~li~ 238 (323)
.....| ++++|+++.+++ .+...|..+-+.+.+.++++.|+++|..+.... ..-+......+.+
T Consensus 661 ~~l~~~---~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 661 LALKVG---QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHT---CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhcC---CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHH
Confidence 345667 679999986543 467899999999999999999999999874321 0112222333334
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCchhhhHHHhhhccCCCCCcchhhhhhhC
Q 040801 239 AYCKCKFVSRAWDLFVKMLFPWNNYGQWAMSATVGPQGLVGRHSTAHQISG 289 (323)
Q Consensus 239 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~ 289 (323)
.....|+.+.|..++.+..+ +..++..+.+.++.++|..+..
T Consensus 732 ~a~~~~~~~~A~~~~~~~g~---------~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 732 DAETTGKFNLAFNAYWIAGD---------IQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHcCC---------HHHHHHHHHHcCChHHHHHHHH
Confidence 44444444444444433221 1233444445556666666554
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.16 E-value=16 Score=25.39 Aligned_cols=47 Identities=4% Similarity=-0.043 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 212 RTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 212 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
-+..+-++.+....+.|++....+.++++-|.+++.-|.++|+-++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555555554443
No 235
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=76.38 E-value=28 Score=28.65 Aligned_cols=47 Identities=6% Similarity=-0.077 Sum_probs=32.8
Q ss_pred HHHhhhccCCCCCcchhhhhhhCCCCchhHHHHHHHHHhccCC-CCee
Q 040801 267 AMSATVGPQGLVGRHSTAHQISGPCPKKAHKLFFFSMLKKVHV-PGVL 313 (323)
Q Consensus 267 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~M~~~g~~-p~~~ 313 (323)
++-..+......++.+.....++.++.+.++..++.+++.|+. |+.-
T Consensus 187 slP~emQ~afes~dld~lnkvl~~M~veeAe~h~~r~idsGLWvp~~~ 234 (265)
T 1us7_B 187 SLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSK 234 (265)
T ss_dssp HSCTTCCCC-------CHHHHHTCCSSSHHHHHHHHHHHHTSSCCTTC
T ss_pred hCCHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHHcCcccCCCC
Confidence 4444567777788889999999999999999999999999965 7653
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=73.90 E-value=17 Score=24.31 Aligned_cols=70 Identities=7% Similarity=-0.105 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 225 (323)
.+...+..+-.++...++-...++|..+|++..... .-+......+=..+...|++++|...|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355566666666654443223589999999888754 2355666667778889999999999999998764
No 237
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.69 E-value=20 Score=31.17 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
...+|.-|...|+.++|.+.++++..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 56677888888888888888877653
No 238
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.53 E-value=26 Score=25.75 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 179 AIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
..+-++.+....+-|+.......|++|-+.+|+..|.++++-++.+- .+....|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33333344444556666666666666666666666666666655432 233444555554
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=71.95 E-value=12 Score=27.01 Aligned_cols=81 Identities=5% Similarity=-0.024 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHhccCChHHHHHHHH
Q 040801 142 KQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKP--NAVTLVNVLTARARARDLRTVKRVHK 219 (323)
Q Consensus 142 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~ 219 (323)
++-+....+.|. ++..+--.+--+++++....+..+++.++.+....+ .| .....=.|--++.+.|++++|.+.++
T Consensus 21 ~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 21 EKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444443 555555555666777764445555888888877654 23 22223345567888888888888888
Q ss_pred HHHHh
Q 040801 220 CVDES 224 (323)
Q Consensus 220 ~m~~~ 224 (323)
.+.+.
T Consensus 99 ~lL~~ 103 (126)
T 1nzn_A 99 GLLQT 103 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88776
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=71.69 E-value=70 Score=30.80 Aligned_cols=122 Identities=8% Similarity=0.025 Sum_probs=73.8
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh----HHHHHHHHHHc------CCCCchH----H
Q 040801 95 SIVRGYTNKNL-HHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV----EKQLHSQAIKF------GLASDSF----L 159 (323)
Q Consensus 95 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~----a~~~~~~m~~~------g~~~~~~----~ 159 (323)
.+++.+...|+ .+.|.++|+++....-.-+..-...++..+.+.++ |.+++.+..+. ...+... .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 68899999999875322222222333444333333 55555444321 2222111 1
Q ss_pred H---HHHHH----HHHhcCCCCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHH
Q 040801 160 H---NTLIN----MYSSCWCLDQPDEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 160 ~---~~li~----~~~~~g~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
. ..|++ -+...| +++-|+++-++-.. +.|+ -.||-.|...|...|+++.|.-.++-+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~---~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRG---DYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccC---cHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 12333 344566 67999999988766 3455 679999999999999999999888876
No 241
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=70.26 E-value=68 Score=29.62 Aligned_cols=94 Identities=7% Similarity=-0.037 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcC-CHHHHHHH
Q 040801 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARAR--DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCK-FVSRAWDL 252 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~ 252 (323)
++++++.++++.... .-+..+|+---..+.+.+ +++++...++++.+.. .-+-..|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 689999999998865 337778888777888888 7799999999999875 236777877777778888 89999999
Q ss_pred HHhccCC-CCchhhhHHHhh
Q 040801 253 FVKMLFP-WNNYGQWAMSAT 271 (323)
Q Consensus 253 ~~~m~~~-~~~~~~~~~~~~ 271 (323)
++++.+. +.+...|.+...
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCccHHHHHHH
Confidence 9998876 456677744333
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=70.05 E-value=35 Score=26.23 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
+++.|.++-+++ -+...|..|-+...+.|+++.|++.|...
T Consensus 20 ~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 20 NLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445666655544 24555666666666666666665555543
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.11 E-value=25 Score=25.83 Aligned_cols=50 Identities=6% Similarity=-0.021 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 210 DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 210 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
|.-+..+-++.+....+.|++....+-++++-|.+++.-|.++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44456777777778899999999999999999999999999999998865
No 244
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.34 E-value=38 Score=26.47 Aligned_cols=181 Identities=8% Similarity=0.015 Sum_probs=95.2
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQG 120 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 120 (323)
.+.+...++.|+.+.+..+++.+.+.|..++. .|..-++. +...+..|+.+ +++.+.+.|
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~---------------~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g 69 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI---------------YNNLRQTP-LHLAVITTLPS----VVRLLVTAG 69 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC---------------CCTTSCCH-HHHHHHTTCHH----HHHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------------ccccCCCH-HHHHHHcCCHH----HHHHHHHcC
Confidence 34566677789999888888888888763332 22222233 44445566654 445555677
Q ss_pred CCCCcc---cHHHHHHHhcchhhHHHHHHHHHHcCC----CCch--HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 121 LIPDRF---MFPSLFKSCADIYVEKQLHSQAIKFGL----ASDS--FLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 121 ~~p~~~---ty~~ll~~~~~~~~a~~~~~~m~~~g~----~~~~--~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
..++.. -.+.+..++ ..|. .++++.+.+.|. .++. ....+.+...++.|. .++++.+.+.|.
T Consensus 70 ~~~~~~~~~g~t~l~~A~-~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~ 140 (241)
T 1k1a_A 70 ASPMALDRHGQTAAHLAC-EHRS-PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGA 140 (241)
T ss_dssp CCTTCCCTTSCCHHHHHH-HTTC-HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTC
T ss_pred CCccccCCCCCCHHHHHH-HcCC-HHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-------HHHHHHHHHcCC
Confidence 665443 233333333 3333 233334444442 2221 112233444445552 234444455666
Q ss_pred CCChHH---HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 040801 192 KPNAVT---LVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 192 ~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 254 (323)
.++... -.+.+...++.|+.+.+. .+.+.|..++... -.+.+..-++.|+.+-+..+++
T Consensus 141 ~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 141 DIDAVDIKSGRSPLIHAVENNSLSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CcccccccCCCcHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 554322 334555566677766544 4445677665432 2244555667788877666665
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.24 E-value=35 Score=25.23 Aligned_cols=68 Identities=12% Similarity=-0.102 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHhccCC---hHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 192 KPNAVTLVNVLTARARARD---LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 192 ~p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
.|+..|-=....+++++.+ ..++..+++.+.+.+-.-.....-.|--++.|.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455444445555555543 3456666666655432112222334445777778888887777777654
No 246
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.88 E-value=22 Score=30.15 Aligned_cols=56 Identities=9% Similarity=0.006 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-----HHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-----EKQLHSQAIK 150 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-----a~~~~~~m~~ 150 (323)
...+|.-|...|+.++|...++++......| .....++......++ +-.++..+.+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~--~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGG--GHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999975432222 222333333333333 6666666653
No 247
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=65.39 E-value=27 Score=27.27 Aligned_cols=146 Identities=12% Similarity=0.006 Sum_probs=67.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCWCL 173 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~ 173 (323)
.+...++.|+++....+++.-...--.+|..-.+.|..++ ..|+ .++.+.+.+.|..++... ..+.+...+..|+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~- 85 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC-SAGH-TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX- 85 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTC-HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC-
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH-HcCc-HHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH-
Confidence 4566667777777776665533221223333344443333 3332 234455556665554321 1223334444442
Q ss_pred CChHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHHhcCCHHHH
Q 040801 174 DQPDEAIKIFYRMEIENVKPNAVT--LVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a 249 (323)
. + +++.+.+.|..++... -.+.+...+..|+.+.+. .+.+.|..++... -.+.+...++.|+.+-+
T Consensus 86 --~-~---~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 155 (231)
T 3aji_A 86 --D-E---IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155 (231)
T ss_dssp --H-H---HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred --H-H---HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 1 2 3333444554443221 123344444556655443 3344565554332 12344555566777766
Q ss_pred HHHHH
Q 040801 250 WDLFV 254 (323)
Q Consensus 250 ~~~~~ 254 (323)
..+++
T Consensus 156 ~~Ll~ 160 (231)
T 3aji_A 156 HILLF 160 (231)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66655
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=65.03 E-value=42 Score=25.22 Aligned_cols=103 Identities=7% Similarity=-0.056 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhcCCCCCh------HHHHHHHHHHHHcCCCCChH----HHHHHHH---HHhccCChHHHHHHHHHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQP------DEAIKIFYRMEIENVKPNAV----TLVNVLT---ARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~------~~a~~~~~~m~~~g~~p~~~----t~~~li~---~~~~~~~~~~a~~~~~~m~~ 223 (323)
..+|=..+...-+.| ++ ++..++|++-.. .++|+.. .|--|.- .+...+|++.|.++|+.+.+
T Consensus 13 yd~W~~yl~llE~~g---~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNS---VPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp HHHHHHHHHHHHHHT---CSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444555555555556 33 455566655443 3455321 1111111 11233799999999999977
Q ss_pred hCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchh
Q 040801 224 SGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYG 264 (323)
Q Consensus 224 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 264 (323)
.+-+. ...|-...+-=.+.|++++|.+++..-...+..|.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 64444 77777777778899999999999998877644433
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=64.75 E-value=40 Score=24.96 Aligned_cols=119 Identities=14% Similarity=-0.002 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 040801 90 IYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSS 169 (323)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 169 (323)
..-||=+|-.....-+-+-..++++..-+ ..|... |.. ...+..--...| .+.-..+.-++.+..
T Consensus 39 i~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~-------C~N---lKrVi~C~~~~n--~~se~vd~ALd~lv~ 103 (172)
T 1wy6_A 39 KSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDK-------CQN---LKSVVECGVINN--TLNEHVNKALDILVI 103 (172)
T ss_dssp HHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGG-------CSC---THHHHHHHHHTT--CCCHHHHHHHHHHHH
T ss_pred ccccceeeeecchhhchhHHHHHHHHHhh---hcCcHh-------hhc---HHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence 33455555555555555555555555422 122211 111 223333333444 344556777888999
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCc
Q 040801 170 CWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFW 227 (323)
Q Consensus 170 ~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 227 (323)
.| .-|+-.++..++.. +.+|+....-.+-.+|.+.|+..++..++.+..++|++
T Consensus 104 ~~---KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 104 QG---KRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp TT---CHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hc---cHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 99 55888888888643 45788888889999999999999999999999999975
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.62 E-value=58 Score=29.03 Aligned_cols=165 Identities=8% Similarity=0.044 Sum_probs=106.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCcccHHHHHHHhcc----hhh-HHHHHHHHHHc------C-CCC
Q 040801 89 TIYTCNSIVRGYTNKNLHHEAFLFYHEMIV-QGLIPDRFMFPSLFKSCAD----IYV-EKQLHSQAIKF------G-LAS 155 (323)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty~~ll~~~~~----~~~-a~~~~~~m~~~------g-~~~ 155 (323)
+......++..|.+.|+++...+.+.-+.. +|..+.. ...++..+.. ... -.+....+.+. | +-.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence 345577788999999999998887766643 3433322 2334333322 111 11111111111 1 111
Q ss_pred ---chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc--CCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHHh---
Q 040801 156 ---DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIE--NVKPN---AVTLVNVLTARARARDLRTVKRVHKCVDES--- 224 (323)
Q Consensus 156 ---~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--- 224 (323)
.......|...|-..| ++.+|.+++.++..+ |.... ...|...++.|...+|+..|..+.+.+...
T Consensus 133 E~erarl~~~La~i~e~~g---~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEG---KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 2344567888999999 779999999998754 32222 347778889999999999999999987532
Q ss_pred -CCccC--hhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 225 -GFWSH--VELKTTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 225 -g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
...|+ ...|.+.+..+...+++.+|...|.+..+
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22222 34577888888899999999988888754
No 251
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.17 E-value=51 Score=25.91 Aligned_cols=58 Identities=9% Similarity=-0.049 Sum_probs=44.5
Q ss_pred cCChHHHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhh
Q 040801 208 ARDLRTVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQ 265 (323)
Q Consensus 208 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 265 (323)
.+.......+|..|..+|+.-. ...|......+-..|++++|.++|+.=.++...|..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4446788889999988887654 456788888888999999999999887766545543
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.88 E-value=25 Score=25.69 Aligned_cols=70 Identities=11% Similarity=-0.105 Sum_probs=43.1
Q ss_pred CCCCChHHHHHHHHHHhccCC---hHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 190 NVKPNAVTLVNVLTARARARD---LRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 190 g~~p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
+-.|+..|==....+++++.+ ..++..+++.+.+.+-.-.....--|--++.|.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334555444445556665554 4457777777766552112334445556788888888888888887765
No 253
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=59.00 E-value=28 Score=29.86 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh----HHHHHHHHHHcCC
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV----EKQLHSQAIKFGL 153 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~----a~~~~~~m~~~g~ 153 (323)
.+.+|.-|...|+.++|.+.++++......| ...+..+..++-+... +.+++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 5778999999999999999999986322211 1223333333333222 5666666665553
No 254
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=58.95 E-value=23 Score=28.38 Aligned_cols=195 Identities=5% Similarity=-0.098 Sum_probs=98.7
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHH--hCCChHHHHHHHHHHHHC-
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYT--NKNLHHEAFLFYHEMIVQ- 119 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~- 119 (323)
.+...++.|+.+....+++.+.+.|...+.-. ...|..-++.|..+.. +.|+.+-+..+++.-...
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~-----------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~ 76 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE-----------FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG 76 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG-----------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh-----------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccccc
Confidence 34455677889998999998888887443200 0011222344444332 456655555555443221
Q ss_pred --------CCC-CCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH----------------HHHHHHHHHhcCCCC
Q 040801 120 --------GLI-PDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL----------------HNTLINMYSSCWCLD 174 (323)
Q Consensus 120 --------g~~-p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~----------------~~~li~~~~~~g~~~ 174 (323)
.+. .|..-.+.|..++ ..|. .++.+.+.+.|..++... ..+.+...+..|.
T Consensus 77 ~~~~~~~~~~~~~d~~g~t~L~~A~-~~g~-~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-- 152 (260)
T 3jxi_A 77 NMREFINSPFRDVYYRGQTALHIAI-ERRC-KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-- 152 (260)
T ss_dssp CHHHHHTCCBCCSSEESBCHHHHHH-HTTC-HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC--
T ss_pred chHhhhcccccccccCCCCHHHHHH-HcCC-HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCC--
Confidence 111 1223334444443 3343 345556667787776543 3455555666663
Q ss_pred ChHHHHHHHHHHHH---cCCCCCh---HHHHHHHHHHhccC-C---hHHHHHHHHHHHHhCCccCh---------hhHHH
Q 040801 175 QPDEAIKIFYRMEI---ENVKPNA---VTLVNVLTARARAR-D---LRTVKRVHKCVDESGFWSHV---------ELKTT 235 (323)
Q Consensus 175 ~~~~a~~~~~~m~~---~g~~p~~---~t~~~li~~~~~~~-~---~~~a~~~~~~m~~~g~~p~~---------~~~~~ 235 (323)
.+.++ .+.+ .|..++. .-.+.|..++.... . .+....+++.+.+.|..++. ..-.+
T Consensus 153 --~~~v~---~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t 227 (260)
T 3jxi_A 153 --PHIVH---YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227 (260)
T ss_dssp --HHHHH---HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred --HHHHH---HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC
Confidence 23333 3445 5555443 23334444443222 1 23334566667777655421 12234
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc
Q 040801 236 LMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~ 257 (323)
-+..-++.|+.+-+..++++-.
T Consensus 228 pL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 228 PLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhCC
Confidence 4555677888888777776543
No 255
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.59 E-value=54 Score=26.42 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHH--cCCCC----ChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHH
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEI--ENVKP----NAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTT 235 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~--~g~~p----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 235 (323)
--++.+.... ++++|++++++... .+.++ +...-...|..=+..+.-..+..+.+++.. .++...-..
T Consensus 23 deLDv~IA~r---~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~ 96 (235)
T 2d2s_A 23 EEIDIELARL---RFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKS 96 (235)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHH
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHH
Confidence 3456677777 77999999988765 23332 122334445555555555566666666633 445666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc
Q 040801 236 LMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 236 li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.+..+.+.|+-++|.++|=+.+
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHH
Confidence 7889999999999999987764
No 256
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.14 E-value=62 Score=24.98 Aligned_cols=54 Identities=15% Similarity=-0.063 Sum_probs=23.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCccChhhH--HHHHHHHHhcCCHHHHHHHHHhccC
Q 040801 201 VLTARARARDLRTVKRVHKCVDESGFWSHVELK--TTLMDAYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~ 258 (323)
.+...+..|+.+.+. .+.+.|..++.... .+-++.-++.|+.+-+..+++...+
T Consensus 180 ~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 180 ALHWAVLAGNTTVIS----LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHHTCHHHHH----HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 344444455544333 33334544443221 1234444555666555555554443
No 257
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=56.62 E-value=25 Score=25.47 Aligned_cols=144 Identities=10% Similarity=-0.075 Sum_probs=66.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH-CCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCC
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIV-QGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCWC 172 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~ 172 (323)
.+...++.|+.+.+..+++. .. .--..|..-.+.|.. +..|. .++.+.+.+.|..++... ..+.+...+..|+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~--~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV--MMFGS-TAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH--SCTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH--HHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45556677888888877766 21 111223333444433 44454 234455556676554321 2233444455552
Q ss_pred CCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChh--hHHHHHHHHHhcCCHHH
Q 040801 173 LDQPDEAIKIFYRMEIENVKPNAV--TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVE--LKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~ 248 (323)
.+..+ .+.+.|..++.. .-.+.+...++.|+.+.+..+++. ..++.. .-.+-+..-++.|+.+-
T Consensus 81 ----~~~v~---~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 81 ----LDTLK---VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp ----HHHHH---HHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred ----HHHHH---HHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 23333 334455444322 112334444556666665555444 122211 11123344456666666
Q ss_pred HHHHHHh
Q 040801 249 AWDLFVK 255 (323)
Q Consensus 249 a~~~~~~ 255 (323)
+..+++.
T Consensus 149 v~~Ll~~ 155 (156)
T 1bd8_A 149 VDILQGH 155 (156)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 5555543
No 258
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=56.37 E-value=37 Score=21.83 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=38.0
Q ss_pred HHHHcCCCCChHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCH
Q 040801 185 RMEIENVKPNAVTLVNVLTARARAR-DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFV 246 (323)
Q Consensus 185 ~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 246 (323)
.|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556766665553 4566666554 4556677777777666555666666666666666654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.59 E-value=87 Score=27.65 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCccCh-
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDES---GFWSHV- 230 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~- 230 (323)
..++..+-+-|.+.| +.++|.+.|.++.... ..--...+-.+|+.+...+++..+....+++... +-.|+.
T Consensus 131 ~~~~~~la~~~~~~G---d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 131 AQAWINLGEYYAQIG---DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp SSCCHHHHHHHHHHC---CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 346777888899999 4589999999988753 3334467778889999999999999998888542 222221
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 231 ---ELKTTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 231 ---~~~~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
..|..++ +...+++.+|-..|-+..
T Consensus 208 ~~lk~~~gl~--~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 208 NRYKTYYGIH--CLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHHG--GGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHhChHHHHHHHHHHHh
Confidence 1233332 345688888888887753
No 260
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=53.19 E-value=50 Score=24.38 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=46.7
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
+.+.+.|++++..=. .+++.+...+..-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 445668888776655 4666776777788899999999888777777777777788888887654
No 261
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=53.14 E-value=41 Score=23.26 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHcCC
Q 040801 155 SDSFLHNTLINMYSSCW-CLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g-~~~~~~~a~~~~~~m~~~g~ 191 (323)
|+.++-+.+++.+...+ .+.+.++|.++-..|.+.|+
T Consensus 48 ~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 48 ANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp SSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 78899999999999987 35588999999999999885
No 262
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.71 E-value=48 Score=24.27 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
+.+.+.|++++..=. .+++.+...+..-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 446678888777655 4566666667778899999999888766777777777788888887654
No 263
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=51.58 E-value=55 Score=22.35 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHH-----HHcCCCCChHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRM-----EIENVKPNAVTLVNV 201 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m-----~~~g~~p~~~t~~~l 201 (323)
+.++.+++...|+.|+..+...++..|...+ + + +.++..+. ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~-l-d---a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG-Q-N---EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT-C-C---HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-C-C---HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 7777777777888777777777777777766 2 1 33322222 224666666665543
No 264
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.50 E-value=43 Score=24.21 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHHcCCCCChHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 185 RMEIENVKPNAVTLVNVLTARARAR-DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 185 ~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.+++.|++++..-. .+++.+...+ ..-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 45678888777665 4667777766 778899999999988777777777777788888876654
No 265
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.41 E-value=94 Score=25.00 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH--CCCCC----CcccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHHHHHHH
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEMIV--QGLIP----DRFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLHNTLIN 165 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~ 165 (323)
--|+.+...+++++|.++.++..+ .++++ +...-...++.-..... +..+.+++.. ..+...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 457889999999999999988754 23432 11222333333333333 6777666633 556666777889
Q ss_pred HHHhcCCCCChHHHHHHHHHHH
Q 040801 166 MYSSCWCLDQPDEAIKIFYRME 187 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~ 187 (323)
.+.+-| +.++|.++|=+..
T Consensus 100 ~L~rLg---~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLG---LPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCC---ChhHHHHHHHHHH
Confidence 999988 6799999987764
No 266
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.39 E-value=51 Score=24.34 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=48.5
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARAR-DLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 346678888877665 4667777766 777899999999888777777777777788888887654
No 267
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.23 E-value=1.1e+02 Score=25.64 Aligned_cols=156 Identities=11% Similarity=-0.015 Sum_probs=82.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCccc---HHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFM---FPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTL 163 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---y~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 163 (323)
..|..-++.|..+ +..|+.+-+.. +.+.|..++... .+.|. ..+..|. .++.+.+.+.|..++.....+.
T Consensus 15 ~~d~~g~t~L~~A-a~~g~~~~v~~----Ll~~g~~~~~~d~~g~t~L~-~A~~~g~-~~~v~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 15 KSDDENMEKIHVA-ARKGQTDEVRR----LIETGVSPTIQNRFGCTALH-LACKFGC-VDTAKYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp -CCHHHHHHHHHH-HHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHH-HHHHHCC-HHHHHHHHHHCCCCCCBTTBCH
T ss_pred ccCCCCCCHHHHH-HHcCCHHHHHH----HHHcCCCccccCCCCCcHHH-HHHHcCC-HHHHHHHHHCCCCccccCCCCH
Confidence 3455556665554 46677655444 445676655432 33333 3333343 3455666677766655334445
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCCCCh--------------------HHHHHHHHHHhccC--ChHHHHHHHHHH
Q 040801 164 INMYSSCWCLDQPDEAIKIFYRMEIENVKPNA--------------------VTLVNVLTARARAR--DLRTVKRVHKCV 221 (323)
Q Consensus 164 i~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~--------------------~t~~~li~~~~~~~--~~~~a~~~~~~m 221 (323)
+..-+..| +.+-+..+++.-...|..|+. .-. +.|...+..| +.+. ++.+
T Consensus 88 L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~----v~~L 159 (364)
T 3ljn_A 88 IHLAVMAN---KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEM----IKIL 159 (364)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHH----HHHH
T ss_pred HHHHHHcC---CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHH----HHHH
Confidence 55556666 435555544443333544443 112 3344444555 5554 4444
Q ss_pred HHhCCccChhhH--HHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 222 DESGFWSHVELK--TTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 222 ~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.+.|..++.... .+.+..-+..|+.+-+..+++.-.
T Consensus 160 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 455776654432 344555667899988888887643
No 268
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.30 E-value=38 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+.+|.-|...|+.++|.+.++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35778999999999999999999986
No 269
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.11 E-value=74 Score=23.82 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=53.0
Q ss_pred HHHHHHHHH-HHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCccChhhHHHHHHHHHhcCCHHH
Q 040801 177 DEAIKIFYR-MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDES--GFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 177 ~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
+++++-+.+ +.+.|++++..=- .+++.+...++.-.|.++++.+.+. +...+..|.---++.+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555544 4557888877654 5778888888889999999999888 766777777777788888887654
No 270
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=48.63 E-value=66 Score=24.85 Aligned_cols=177 Identities=12% Similarity=0.038 Sum_probs=87.2
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLI 122 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 122 (323)
.+...++.|+.+....+++.-...-. ..|...++.| ...+..|+.+ +++.+.+.|..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~------------------~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~ 65 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLAT------------------RTDQDSRTAL-HWACSAGHTE----IVEFLLQLGVP 65 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGG------------------CCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhh------------------cCCCCCCCHH-HHHHHcCcHH----HHHHHHHhCCC
Confidence 45556667777766666654221111 2233333333 3344556654 44455566655
Q ss_pred CCc---ccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHH
Q 040801 123 PDR---FMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT 197 (323)
Q Consensus 123 p~~---~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t 197 (323)
++. .-++.|..+ +..|. .++.+.+.+.|..++... ..+.+...+..| +. +. ++.+.+.|..++...
T Consensus 66 ~~~~~~~g~t~L~~A-~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~-~~---~~~Ll~~g~~~~~~~ 136 (231)
T 3aji_A 66 VNDKDDAGWSPLHIA-ASAGX-DEIVKALLVKGAHVNAVNQNGCTPLHYAASKN---RH-EI---AVMLLEGGANPDAKD 136 (231)
T ss_dssp SCCCCTTSCCHHHHH-HHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CH-HH---HHHHHHTTCCTTCCC
T ss_pred CCCcCCCCCCHHHHH-HHcCH-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC---CH-HH---HHHHHHcCCCCCCcC
Confidence 543 233344333 33333 345556666776554322 123444445555 22 23 333445565554321
Q ss_pred --HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHHhcCCHHHHHHHHHh
Q 040801 198 --LVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 198 --~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
-.+.+...+..|+.+.+. .+.+.|..++... -.+-+...++.|+.+-+..+++.
T Consensus 137 ~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 137 HYDATAMHRAAAKGNLKMVH----ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp TTSCCHHHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcHHHHHHHcCCHHHHH----HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 223455555667766544 4445676665332 22445556677887776666654
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.13 E-value=35 Score=28.02 Aligned_cols=151 Identities=11% Similarity=-0.033 Sum_probs=80.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHH
Q 040801 88 PTIYTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLIN 165 (323)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~ 165 (323)
.|..-++.| ...+..|+.+-+. .+.+.|..++...-.+.|...+..|. .++.+.+.+.|..++... ..+-+.
T Consensus 27 ~d~~g~t~L-~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 27 ADVHGHSAS-YYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLED-TKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp CCTTSCCHH-HHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSS-CHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCCCHH-HHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 344344444 4445667765444 44455665554432233444444443 457788888887665422 223444
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCCCChHH---HHHHHHHHhccCChHHHHHHHHHHHHhCCccChh-hHHHHHHHHH
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT---LVNVLTARARARDLRTVKRVHKCVDESGFWSHVE-LKTTLMDAYC 241 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~ 241 (323)
..+..|+ .+..+++ .+.|..++... +.+.+...+..|+.+.+. .+.+.|..+... .-.+.+..-+
T Consensus 101 ~A~~~g~----~~~v~~L---l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~ 169 (285)
T 3kea_A 101 YAVDSGN----MQTVKLF---VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITI 169 (285)
T ss_dssp HHHHTTC----HHHHHHH---HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHH
T ss_pred HHHHcCC----HHHHHHH---HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHH
Confidence 4455552 2333333 44465555432 245666666677765544 444455444222 4445566667
Q ss_pred hcCCHHHHHHHHHh
Q 040801 242 KCKFVSRAWDLFVK 255 (323)
Q Consensus 242 ~~g~~~~a~~~~~~ 255 (323)
+.|+.+-+..+++.
T Consensus 170 ~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 170 KNGHVDMMILLLDY 183 (285)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcChHHHHHHHHHc
Confidence 88888877777664
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.04 E-value=70 Score=25.11 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 176 PDEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
..++.++|..|...|+.-. ..-|......+...|++.+|..||..=.+.+-.|-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4689999999999887654 45677777888888999999999999888888883
No 273
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.03 E-value=32 Score=26.32 Aligned_cols=149 Identities=10% Similarity=-0.047 Sum_probs=78.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCC-CC-cccHHHHHHHhcchhh---HHHHHHHHHHcCCCCchHHH--HHHHHHHHhcC
Q 040801 99 GYTNKNLHHEAFLFYHEMIVQGLI-PD-RFMFPSLFKSCADIYV---EKQLHSQAIKFGLASDSFLH--NTLINMYSSCW 171 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~ty~~ll~~~~~~~~---a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g 171 (323)
..++.|+++....+++. ++. .+ ..-.+.|. ..+..+. -.++.+.+.+.|..++.... .+-++..+..|
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh-~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILY-DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHH-HHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHH-HHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 34577888876665543 221 11 11233444 4444444 35677888888887765321 22333334444
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHH---HHHHHHHHhccCCh-HHHHHHHHHHHH-hCCccChhhH--HHHHHHHHhcC
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAVT---LVNVLTARARARDL-RTVKRVHKCVDE-SGFWSHVELK--TTLMDAYCKCK 244 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~-~~a~~~~~~m~~-~g~~p~~~~~--~~li~~~~~~g 244 (323)
.. +.....++.+-+.+.|..+|... .++.+...+..+.. .....+++.+.+ .|..++.... .+-++.-++.|
T Consensus 87 ~~-~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 87 GN-DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred Cc-chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence 33 44555677777788887766532 21344433333332 344567777777 8877765432 13444445666
Q ss_pred CHHHHHHHH
Q 040801 245 FVSRAWDLF 253 (323)
Q Consensus 245 ~~~~a~~~~ 253 (323)
+.+-..-+.
T Consensus 166 ~~~~v~~L~ 174 (186)
T 3t8k_A 166 KPIALKMME 174 (186)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 655443333
No 274
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.79 E-value=1e+02 Score=23.77 Aligned_cols=150 Identities=8% Similarity=-0.163 Sum_probs=79.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCC----CCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH-------------
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQG----LIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL------------- 159 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~------------- 159 (323)
+...+..|+.+-+..+++.-..-. -..|..-.+.|..++. .|. .++.+.+.+.|..++...
T Consensus 41 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~-~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 118 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI-NQN-VNLVRALLARGASVSARATGSVFHYRPHNLI 118 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHH-TTC-HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSC
T ss_pred HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHH-cCC-HHHHHHHHhCCCCCCcccCCcceeecccccc
Confidence 344456677665555554321110 1112233344444433 333 345556666776665431
Q ss_pred --HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCccC------
Q 040801 160 --HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV--TLVNVLTARARARDLRTVKRVHKCVDESGFWSH------ 229 (323)
Q Consensus 160 --~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------ 229 (323)
..+.+...+..|+ .+. ++.+.+.|..++.. .-.+.+...+..|+.+.+..+++.+.+.|..++
T Consensus 119 ~~g~t~L~~A~~~~~----~~~---v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~ 191 (232)
T 2rfa_A 119 YYGEHPLSFAACVGS----EEI---VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191 (232)
T ss_dssp CCCSSHHHHHHHHTC----HHH---HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGG
T ss_pred cCCCCHHHHHHHcCC----HHH---HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhc
Confidence 2334445555552 233 33344556555432 223556666788888888888888888876542
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 040801 230 ---VELKTTLMDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 230 ---~~~~~~li~~~~~~g~~~~a~~~~~~m 256 (323)
..-. +-++.-++.|+.+-+..+++.=
T Consensus 192 ~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 192 VPNNQGL-TPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CCCTTSC-CHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCC-CHHHHHHHcCCHHHHHHHHhcC
Confidence 2222 3445556678887777776654
No 275
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.73 E-value=1.7e+02 Score=29.64 Aligned_cols=110 Identities=9% Similarity=0.015 Sum_probs=64.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCc-----------------------ccHHHHHHHhcchhh---HHHHHHHHHHc
Q 040801 98 RGYTNKNLHHEAFLFYHEMIVQGLIPDR-----------------------FMFPSLFKSCADIYV---EKQLHSQAIKF 151 (323)
Q Consensus 98 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------------------~ty~~ll~~~~~~~~---a~~~~~~m~~~ 151 (323)
.+|...|++++|.+.|.+-- .|+..+. .=|..++..+-+.+. +.++-....+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778899999999997631 1221111 113444444444444 33333333332
Q ss_pred CC-CC---chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHH
Q 040801 152 GL-AS---DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRT 213 (323)
Q Consensus 152 g~-~~---~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 213 (323)
.- .. ....|..+.+++...| ++++|...+-.+.....+ ......++..+|..|.++.
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~---~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAG---KFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHC---CSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhC---CHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 21 11 1235888888888888 558888888777654433 4566677777776665544
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.89 E-value=46 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
..+.+|.-|...|+.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 35789999999999999999999986
No 277
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=44.02 E-value=33 Score=24.48 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
|+.++-+.+++.+...+.....++|+++-..+.+.|+
T Consensus 35 ~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 35 KKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp SSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred cceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 6777788888888887766677899999998888774
No 278
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.79 E-value=96 Score=25.76 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhccCChHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFL--HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAV---TLVNVLTARARARDLRTVK 215 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~ 215 (323)
...+.+.+.+.|..++... ..+-+...+..| ..+.+..++. ..|..++.. -.+.|. .-++.|+.+
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~---~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~-~A~~~g~~~--- 287 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKK---HLGLVQRLLE---QEHIEINDTDSDGKTALL-LAVELKLKK--- 287 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT---CHHHHHHHHT---STTCCTTCBCTTSCBHHH-HHHHTTCHH---
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh---hhHHHHHHHH---hcCCcccCcCCCCCCHHH-HHHHcCCHH---
Confidence 6667777888887665432 223445555666 3233333221 124333322 222333 334556654
Q ss_pred HHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 040801 216 RVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLF 253 (323)
Q Consensus 216 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 253 (323)
+.+.+.+.|..++..+ .+..-++.|+.+-+.-++
T Consensus 288 -iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll 321 (337)
T 4g8k_A 288 -IAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLL 321 (337)
T ss_dssp -HHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHH
Confidence 4455566788777654 344445667765444433
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.50 E-value=99 Score=23.00 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 040801 214 VKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFP 259 (323)
Q Consensus 214 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 259 (323)
...+|..|..+|+--. ...|......+-..|++++|.++|+.=.++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5566666666655443 334556666666666666666666655444
No 280
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=43.03 E-value=94 Score=22.59 Aligned_cols=76 Identities=11% Similarity=-0.037 Sum_probs=55.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
+-.|+..+--.+--+++++...++..+++.++++....+..-.....=-|--|+.+.|+++.|.+..+.+.+. +|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 3345666655666788888866677789999999887662223444445667899999999999999998876 565
No 281
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=42.50 E-value=95 Score=23.78 Aligned_cols=146 Identities=10% Similarity=-0.088 Sum_probs=70.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH-----HHHHHHHHHhcC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL-----HNTLINMYSSCW 171 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~-----~~~li~~~~~~g 171 (323)
+...++.|+.+....+++.-...-...|..-.+.|..++. .|+ .++.+.+.+.|-.++... ..+.+...+..|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~-~~~-~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~ 83 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS-FQA-HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHH-TTC-HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHH-cCC-HHHHHHHHhccccccccccCCCCCCCHHHHHHHcC
Confidence 4556677887776666655332222244444444444433 232 345566666663333221 223344445555
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHHhcCC
Q 040801 172 CLDQPDEAIKIFYRMEIEN--VKPNAV--TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYCKCKF 245 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g--~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~ 245 (323)
+ .++++.+.+.| ..++.. .-.+.+...+..|+.+.+ +.+.+.|..++... -.+.+...++.|+
T Consensus 84 ~-------~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 152 (228)
T 2dzn_A 84 N-------LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS----QFLIENGASVRIKDKFNQIPLHRAASVGS 152 (228)
T ss_dssp C-------HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred C-------HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHH----HHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 2 22334445555 222211 112334444556666544 44445576665332 2234555667788
Q ss_pred HHHHHHHHHh
Q 040801 246 VSRAWDLFVK 255 (323)
Q Consensus 246 ~~~a~~~~~~ 255 (323)
.+-+..+++.
T Consensus 153 ~~~v~~Ll~~ 162 (228)
T 2dzn_A 153 LKLIELLCGL 162 (228)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 7766666554
No 282
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=42.28 E-value=1.1e+02 Score=23.02 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=74.6
Q ss_pred CCChhhHHHHHHHHHhCCCh------HHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHH
Q 040801 87 NPTIYTCNSIVRGYTNKNLH------HEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFL 159 (323)
Q Consensus 87 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~ 159 (323)
+.|..+|=..+.-.-+.|++ ++..++|++-... ++|+.. ..-.+ +.-...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~---------~~wrrYI~LWIr------------- 66 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKY---------GQNESFARIQVR------------- 66 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGG---------TTCHHHHHHHHH-------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcccc---------ccHHHHHHHHHH-------------
Confidence 56777787778877777888 7777777766553 555420 11111 111111
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD 238 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 238 (323)
|..+ ... + +.++|.++|+.+...+-+. ...|....+-=.+.|++..|.+++......+.+|. .+.++.|.
T Consensus 67 YA~~-~ei---~---D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 67 FAEL-KAI---Q---EPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHHH-HHH---H---CGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HHHH-HHh---c---CHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 1111 111 3 5678888888886644444 77777777777789999999999999888776654 44444444
No 283
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=42.10 E-value=37 Score=25.91 Aligned_cols=131 Identities=9% Similarity=0.043 Sum_probs=78.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcc---cHHHHHHHhcchhh----HHHHHHHHHHcCCCCchHHH--H-HHHH
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF---MFPSLFKSCADIYV----EKQLHSQAIKFGLASDSFLH--N-TLIN 165 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~~~----a~~~~~~m~~~g~~~~~~~~--~-~li~ 165 (323)
.+...+..|+.+.-.++.+.+.+.|..+|.. -.+.|..++..... ..++.+.+.+.|..++.... . +.++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh 120 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence 4455567777777778888888999877653 23334333322111 35778888889987765322 2 4444
Q ss_pred HHHhcCCCCChHHHHHHHHHHHH-cCCCCChHHH--HHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 166 MYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTL--VNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 166 ~~~~~g~~~~~~~a~~~~~~m~~-~g~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
..+..|. ...+-.++++-+.+ .|..++.... .+.+...++.|..+.+.-+.+...+.+++.
T Consensus 121 ~A~~~~~--~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 121 NIFNYFV--DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGGGCCS--CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCC--ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 4444331 11344567777777 7776654321 245555567788777777777776666553
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.86 E-value=57 Score=24.31 Aligned_cols=53 Identities=6% Similarity=-0.067 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 177 DEAIKIFYRMEIENVKPN-AVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 177 ~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
+++.++|..|..+|+.-. ..-|......+-..|++.+|..|+..=.+.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 458999999999887654 45677777888889999999999999888888884
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.32 E-value=50 Score=26.98 Aligned_cols=151 Identities=8% Similarity=-0.130 Sum_probs=79.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCc---ccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHH---HHHHHHHH
Q 040801 95 SIVRGYTNKNLHHEAFLFYHEMIVQGLIPDR---FMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLH---NTLINMYS 168 (323)
Q Consensus 95 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~ 168 (323)
+.+...+..|+.+-+ +.+.+.|..++. .-.+.|..++ ..|. .++.+.+.+.|..++.... .+.+...+
T Consensus 64 t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~-~~g~-~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~ 137 (285)
T 3kea_A 64 FPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAV-DSGN-MQTVKLFVKKNWRLMFYGKTGWKTSFYHAV 137 (285)
T ss_dssp CHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHH-HTTC-HHHHHHHHHHCGGGGGCSSSGGGSHHHHHH
T ss_pred CHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHH-HcCC-HHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Confidence 345555677776544 444566766554 3334444443 3333 3445556666766654332 45666667
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh---HHHHHHHHHhcC
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAV-TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL---KTTLMDAYCKCK 244 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g 244 (323)
..|.. + +++.+.+.|..+... .-.+.+...+..|..+.+..+++. |..++... ++..+..-++.|
T Consensus 138 ~~~~~----~---~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----gad~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 138 MLNDV----S---IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY----MTSTNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp HTTCH----H---HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH----HHHTCTTCCCBCCTTHHHHHHHT
T ss_pred HcCCH----H---HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc----CCCCCcccCCCCChHHHHHHHcC
Confidence 76632 3 333445555433221 344556666677887766655544 54444332 233455556677
Q ss_pred CHHHHHHHHHhccCCCCchhhh
Q 040801 245 FVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
+.+-+ +.+.+.|.+++..
T Consensus 207 ~~~~v----~~Ll~~gad~~~~ 224 (285)
T 3kea_A 207 DIEML----QALFKYDINIYSA 224 (285)
T ss_dssp CHHHH----HHHTTSCBCSTTT
T ss_pred CHHHH----HHHHHcCCCCCCC
Confidence 75544 4444555555443
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.20 E-value=50 Score=24.22 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=43.9
Q ss_pred HHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 185 RMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 185 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.+++.|++++..-- .+++.+...+ .-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 45567888777644 3555555556 67889999999888766777777667777888776544
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.00 E-value=64 Score=24.41 Aligned_cols=50 Identities=2% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 179 AIKIFYRMEIENVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 179 a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
..++|..|..+|+.-.. .-|......+-..|++.+|..||..-.+.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44555555555543322 344444444445555555555555555555555
No 288
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=40.20 E-value=1.5e+02 Score=24.03 Aligned_cols=27 Identities=4% Similarity=-0.263 Sum_probs=0.0
Q ss_pred cchhhhhhHHHhhcCCCchHHHHHHHH
Q 040801 36 SQYQAHFCLVSLEKCSTMRELKQIHAQ 62 (323)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~i~~~ 62 (323)
+.....+.+...+..|+.+....+...
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~ 37 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPA 37 (285)
T ss_dssp ---------------------------
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCC
Confidence 344556677777777776666554433
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.12 E-value=1.2e+02 Score=23.04 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
++..+-...+.++++.|. .++...+.++.. .++...=...+.++.+.|+.+....+.+. .+ .++..+-.
T Consensus 93 ~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~-l~---d~~~~vr~ 161 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD----ERAVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKA-LK---DEDGWVRQ 161 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC----GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc----HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-Hc---CCCHHHHH
Confidence 555555666666666662 234444444442 35555555666666666654433333222 22 34555556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
..+.++.+.|. +++...+.++.
T Consensus 162 ~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 162 SAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc-hhHHHHHHHHH
Confidence 66666666665 33344444443
No 290
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=39.54 E-value=87 Score=23.94 Aligned_cols=142 Identities=8% Similarity=-0.066 Sum_probs=69.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcc---cHHHHHHHhcchhhHHHHHHHHHHcCC-CCc---hHHHHHHHHHHH
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF---MFPSLFKSCADIYVEKQLHSQAIKFGL-ASD---SFLHNTLINMYS 168 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~~~a~~~~~~m~~~g~-~~~---~~~~~~li~~~~ 168 (323)
.+...++.|+.+- ++.+.+.|..++.. -++.|..+ +..|. .++.+.+.+.+- .++ ..-.+ .+...+
T Consensus 28 ~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~ 100 (223)
T 2f8y_A 28 ALHLAARYSRSDA----AKRLLEASADANIQDNMGRTPLHAA-VSADA-QGVFQILIRNRATDLDARMHDGTT-PLILAA 100 (223)
T ss_dssp HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHTTC-HHHHHHHHHBTTSCTTCCCTTCCC-HHHHHH
T ss_pred hHHHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHH-HHcCC-HHHHHHHHHcCCCCcccCCCCCCc-HHHHHH
Confidence 3445567777654 44455567655543 23444333 33333 234445555542 222 22223 334444
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhh--HHHHHHHHHhcC
Q 040801 169 SCWCLDQPDEAIKIFYRMEIENVKPNAVT--LVNVLTARARARDLRTVKRVHKCVDESGFWSHVEL--KTTLMDAYCKCK 244 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g 244 (323)
..|+ .+. ++.+.+.|..++... -.+.+...+..|+.+.+ +.+.+.|..++... -.+-+..-++.|
T Consensus 101 ~~~~----~~~---~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 169 (223)
T 2f8y_A 101 RLAV----EGM---LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA----VVLLKNGANKDMQNNREETPLFLAAREG 169 (223)
T ss_dssp HHTC----HHH---HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HhCc----HHH---HHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCcCHHHHHHHcC
Confidence 5552 233 333444565554322 22445555566776554 44455676665432 123445556778
Q ss_pred CHHHHHHHHHh
Q 040801 245 FVSRAWDLFVK 255 (323)
Q Consensus 245 ~~~~a~~~~~~ 255 (323)
+.+-+..+++.
T Consensus 170 ~~~~v~~Ll~~ 180 (223)
T 2f8y_A 170 SYETAKVLLDH 180 (223)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 88777776665
No 291
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=39.18 E-value=68 Score=27.27 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHH---HhcCCHHHHHHHHHhcc
Q 040801 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAY---CKCKFVSRAWDLFVKML 257 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~ 257 (323)
++++.+...|+.|...++..++..+++.=.++.+.++|+.+...|...-..+.-+++..+ .-..+.++...+++++.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 455666777899999999999999988888999999999998877432222222333322 12346777777777765
Q ss_pred CC
Q 040801 258 FP 259 (323)
Q Consensus 258 ~~ 259 (323)
..
T Consensus 294 ~~ 295 (334)
T 2qq8_A 294 ED 295 (334)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 292
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=39.12 E-value=5.7 Score=32.09 Aligned_cols=140 Identities=9% Similarity=-0.119 Sum_probs=72.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCc-------ccHHHHHHHhcc--hhh---HHHHHHHHHHcCCC---------
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDR-------FMFPSLFKSCAD--IYV---EKQLHSQAIKFGLA--------- 154 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~ty~~ll~~~~~--~~~---a~~~~~~m~~~g~~--------- 154 (323)
.+...++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|. +..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 455567889999888888888887765543 445566555543 143 54444443332211
Q ss_pred -CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHH---------------HHHHHHHHhccCChHHHHHHH
Q 040801 155 -SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVT---------------LVNVLTARARARDLRTVKRVH 218 (323)
Q Consensus 155 -~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t---------------~~~li~~~~~~~~~~~a~~~~ 218 (323)
.|.. ..+.+...+..|+ .++. +.+.+.|..++... -.+.|...+..|+.+.+
T Consensus 85 ~~d~~-g~t~L~~A~~~g~----~~~v---~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v---- 152 (256)
T 2etb_A 85 DEFYQ-GHSALHIAIEKRS----LQCV---KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV---- 152 (256)
T ss_dssp STTTT-TCCHHHHHHHTTC----HHHH---HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH----
T ss_pred ccccc-CCCHHHHHHHcCC----HHHH---HHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHH----
Confidence 1122 2334444455552 2333 33455566555432 22445555566776544
Q ss_pred HHHHH---hCCccChh---hHHHHHHHHH-hcCCHH
Q 040801 219 KCVDE---SGFWSHVE---LKTTLMDAYC-KCKFVS 247 (323)
Q Consensus 219 ~~m~~---~g~~p~~~---~~~~li~~~~-~~g~~~ 247 (323)
+.+.+ .|..++.. -.+.|..+.. ..|..+
T Consensus 153 ~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~ 188 (256)
T 2etb_A 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188 (256)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence 44445 56665433 2334443332 256665
No 293
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.82 E-value=1e+02 Score=24.24 Aligned_cols=194 Identities=8% Similarity=-0.061 Sum_probs=97.2
Q ss_pred hHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHHh--CCChHHHHHHHHHHHHCC
Q 040801 43 CLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYTN--KNLHHEAFLFYHEMIVQG 120 (323)
Q Consensus 43 li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g 120 (323)
.+...++.|+.+....+++.+.+.|..++... ...|..-++.|..+... .|+.+-+..+++.-...+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~-----------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~ 73 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA-----------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSG 73 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG-----------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCccccc-----------ccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCccc
Confidence 45556677888888888888888887333100 00233334444444432 266666555554433322
Q ss_pred CC----------CCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH---------------HHHHHHHHHhcCCCCC
Q 040801 121 LI----------PDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL---------------HNTLINMYSSCWCLDQ 175 (323)
Q Consensus 121 ~~----------p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~---------------~~~li~~~~~~g~~~~ 175 (323)
.. .|..-.+.|..++. .|. .++.+.+.+.|..++... ..+.+...+..|+
T Consensus 74 ~~~~~~~~~~~~~d~~g~t~L~~A~~-~g~-~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~--- 148 (256)
T 2etb_A 74 NPKPLVNAQCTDEFYQGHSALHIAIE-KRS-LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ--- 148 (256)
T ss_dssp CSSCGGGCCCCSTTTTTCCHHHHHHH-TTC-HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC---
T ss_pred chhhhcccccccccccCCCHHHHHHH-cCC-HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCC---
Confidence 11 12334444444443 333 344556667777665543 2344555566662
Q ss_pred hHHHHHHHHHHHH---cCCCCCh---HHHHHHHHHHh-ccCChH---HHHHHHHHHHHhCCcc-------Chh--hHHHH
Q 040801 176 PDEAIKIFYRMEI---ENVKPNA---VTLVNVLTARA-RARDLR---TVKRVHKCVDESGFWS-------HVE--LKTTL 236 (323)
Q Consensus 176 ~~~a~~~~~~m~~---~g~~p~~---~t~~~li~~~~-~~~~~~---~a~~~~~~m~~~g~~p-------~~~--~~~~l 236 (323)
.++++ .+.+ .|..++. .-.+.|..++. ..+..+ ....+++.+.+.|..+ +.. .-.+-
T Consensus 149 -~~~v~---~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp 224 (256)
T 2etb_A 149 -WDVVT---YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224 (256)
T ss_dssp -HHHHH---HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH
T ss_pred -HHHHH---HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH
Confidence 23333 3344 5555433 23334444443 245554 2233555666666555 111 12234
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 040801 237 MDAYCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m 256 (323)
++.-++.|+.+-+..+++.-
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCC
Confidence 45556778877777766643
No 294
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=38.46 E-value=84 Score=25.16 Aligned_cols=195 Identities=8% Similarity=-0.058 Sum_probs=98.6
Q ss_pred hhHHHhhcCCCchHHHHHHHHHHHhcCCCCCccchhHHHhcccCCCCChhhHHHHHHHHH--hCCChHHHHHHHHHHHH-
Q 040801 42 FCLVSLEKCSTMRELKQIHAQMLRTSLFFDPCADYHVRLVFSQISNPTIYTCNSIVRGYT--NKNLHHEAFLFYHEMIV- 118 (323)
Q Consensus 42 ~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~y~~~~a~~lf~~m~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~- 118 (323)
+.+...++.|+.+.+..+++...+.+...+.. -...|..-++.|..++. +.|+.+-+.-+++.-..
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----------~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDS-----------EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSG-----------GGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCc-----------ccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 44555667789898888888887776522110 00113333455555554 34666666656555322
Q ss_pred --------CCCC-CCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH----------------HHHHHHHHHhcCCC
Q 040801 119 --------QGLI-PDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL----------------HNTLINMYSSCWCL 173 (323)
Q Consensus 119 --------~g~~-p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~----------------~~~li~~~~~~g~~ 173 (323)
.++. .|..-.+.|..++. .|. .++.+.+.+.|..++... ..+-+...+..|+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~-~g~-~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~- 160 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIE-RRN-MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ- 160 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHH-TTC-HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC-
T ss_pred cchhHHhhcccccccCCCCCHHHHHHH-cCC-HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCC-
Confidence 1111 23344455554443 333 344556666777665432 3344555566662
Q ss_pred CChHHHHHHHHHHHH---cCCCCChH---HHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCccCh---------hhH
Q 040801 174 DQPDEAIKIFYRMEI---ENVKPNAV---TLVNVLTARARARD-----LRTVKRVHKCVDESGFWSHV---------ELK 233 (323)
Q Consensus 174 ~~~~~a~~~~~~m~~---~g~~p~~~---t~~~li~~~~~~~~-----~~~a~~~~~~m~~~g~~p~~---------~~~ 233 (323)
. +.++ .+.+ .|..++.. -.+.|..++ ..|+ .+....+++.+.+.|..++. ..-
T Consensus 161 --~-~~v~---~Ll~~~~~gad~~~~d~~g~tpLh~A~-~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g 233 (273)
T 2pnn_A 161 --L-AIVK---FLLQNSWQPADISARDSVGNTVLHALV-EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233 (273)
T ss_dssp --H-HHHH---HHHHCSSCCCCTTCCCTTSCCHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred --H-HHHH---HHHhcccCCCCceeeCCCCCcHHHHHH-HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Confidence 2 3333 3345 55554432 223333333 3332 22224566666666655431 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 234 TTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 234 ~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
.+-+..-++.|+.+-+..+++.=.
T Consensus 234 ~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 234 LTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHhChHHHHHHHHHCCC
Confidence 244555667888887777776543
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.69 E-value=1e+02 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCccChhhHH--HHHHHHHhcCCHHHHH
Q 040801 215 KRVHKCVDESGFWSHVELKT--TLMDAYCKCKFVSRAW 250 (323)
Q Consensus 215 ~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~ 250 (323)
..+.+.+.+.|..++..... +-++.-++.|+.+-+.
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 44555555666555433221 2333334445544433
No 296
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=37.08 E-value=47 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 040801 79 RLVFSQIS--NPTIYTCNSIVRGYTNKNLHHEAFLFYHEM 116 (323)
Q Consensus 79 ~~lf~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 116 (323)
.+++++++ .|++.+|+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46777887 788888988888777766666777666654
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.65 E-value=1.2e+02 Score=25.48 Aligned_cols=198 Identities=10% Similarity=-0.055 Sum_probs=97.6
Q ss_pred hhhHHHhhcCCCchHHHHHHHHHHHhcCCCCC---cc-----------chhHHHhc-ccCCCCCh-hhHHHHHHHHHhCC
Q 040801 41 HFCLVSLEKCSTMRELKQIHAQMLRTSLFFDP---CA-----------DYHVRLVF-SQISNPTI-YTCNSIVRGYTNKN 104 (323)
Q Consensus 41 ~~li~~~~~~~~~~~a~~i~~~m~~~~~~~~~---y~-----------~~~a~~lf-~~m~~~~~-~~~~~li~~~~~~g 104 (323)
.+.+...+..|+.+-+..+ .+.|..++. .+ ..+..+++ +.-...+. ..++ .+...+..|
T Consensus 21 ~t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcC
Confidence 4555666667776555444 456766655 11 11333333 22222222 2233 344455678
Q ss_pred ChHHHHHHHHHHHHCCCCCCc--------------------ccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHH--HH
Q 040801 105 LHHEAFLFYHEMIVQGLIPDR--------------------FMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFL--HN 161 (323)
Q Consensus 105 ~~~~A~~~~~~m~~~g~~p~~--------------------~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~--~~ 161 (323)
+.+-+..+++.-...|..|+. .-.+.|..++. .|. -.++.+.+.+.|..++... ..
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~~~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG-LGPEYLEMIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHH-SCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHH-cCCchHHHHHHHHHcCCCCcccCCCCC
Confidence 877777777665444544432 22344444433 332 3455566666676665432 12
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCC-----CChH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH-
Q 040801 162 TLINMYSSCWCLDQPDEAIKIFYRMEIENVK-----PNAV--TLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK- 233 (323)
Q Consensus 162 ~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~-----p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~- 233 (323)
+.+...+..|+ .++++++ .+.|.. ++.. .-.+.|...+..|..+. .+.+.+.|..++....
T Consensus 175 t~L~~A~~~g~----~~~v~~L---l~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~gad~~~~d~~ 243 (364)
T 3ljn_A 175 TPLMRAMEFRN----REALDLM---MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV----AMRFVEMGIDVNMEDNE 243 (364)
T ss_dssp CHHHHHHHTTC----HHHHHHH---HHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH----HHHHHTTTCCTTCCCTT
T ss_pred CHHHHHHHcCC----HHHHHHH---HhcccccccccccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCCCCCCC
Confidence 33444455552 2344433 322222 2211 11233444556677654 4445556776654332
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHh
Q 040801 234 -TTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 234 -~~li~~~~~~g~~~~a~~~~~~ 255 (323)
.+-+..-++.|+.+-+..+++.
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHHHc
Confidence 2344555677888888888776
No 298
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=36.46 E-value=1e+02 Score=21.24 Aligned_cols=87 Identities=10% Similarity=-0.027 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040801 176 PDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVK 255 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 255 (323)
-++|.-+-+-....|. ....--+=+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-+.+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3555555555444332 1111112233455667777766655442 3666666665543 466777777766666
Q ss_pred ccCCCCchhhhHHHhh
Q 040801 256 MLFPWNNYGQWAMSAT 271 (323)
Q Consensus 256 m~~~~~~~~~~~~~~~ 271 (323)
+..+| +|..-.+...
T Consensus 94 la~sg-~p~~q~Fa~g 108 (115)
T 2uwj_G 94 LGGSS-DPALADFAAG 108 (115)
T ss_dssp HHTCS-SHHHHHHHHH
T ss_pred HHhCC-CHHHHHHHHH
Confidence 66554 3443344333
No 299
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=36.43 E-value=1.4e+02 Score=25.15 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHH----HHhcCCHHHHHHHHHhc
Q 040801 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDA----YCKCKFVSRAWDLFVKM 256 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~~~~~~m 256 (323)
++++.+...|+.|...++..++..+++.=.++.+.++|+.+...|...-..+.-+++.. ..++.+.++...+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 56667777899999999999999999888899999999999888755322223334432 33456788888888874
Q ss_pred cC
Q 040801 257 LF 258 (323)
Q Consensus 257 ~~ 258 (323)
..
T Consensus 289 ~p 290 (331)
T 3qye_A 289 LP 290 (331)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.06 E-value=86 Score=23.67 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 213 TVKRVHKCVDESGFWSH-VELKTTLMDAYCKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 213 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
....+|..|..+|+--. ...|......+-..|++.+|.++|+.=.+++..|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36779999999988765 5568888889999999999999999877765555443
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.90 E-value=1.2e+02 Score=22.73 Aligned_cols=60 Identities=7% Similarity=-0.072 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCcc--ChhhHHHHHH------HHHhcCCHHHHHHHHHhccC
Q 040801 198 LVNVLTARARARDLRTVKRVHKCVDESGFWS--HVELKTTLMD------AYCKCKFVSRAWDLFVKMLF 258 (323)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~ 258 (323)
|..-+.-+ ..|++-+|..+++..-...-.+ ....|..||. ...+.|+...|..++++...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43344433 4499999999999997665455 5677888888 23457999999999887754
No 302
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=35.59 E-value=72 Score=25.89 Aligned_cols=66 Identities=18% Similarity=0.036 Sum_probs=31.1
Q ss_pred HHHHcCCCCChHHH--HHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH--HHHHHHHHhcCCHHHHHHHHH
Q 040801 185 RMEIENVKPNAVTL--VNVLTARARARDLRTVKRVHKCVDESGFWSHVELK--TTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 185 ~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~ 254 (323)
.+.+.|..|+.... .+.|...+..|+.+.+.. +.+.|..++.... .+-+..-+..|+.+-+.-+++
T Consensus 137 ~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~----Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 206 (269)
T 4b93_B 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL----LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206 (269)
T ss_dssp HHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH----HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH----HHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 33445555443211 122333345566554433 3445665543322 234444556677766655554
No 303
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=35.35 E-value=1.1e+02 Score=21.17 Aligned_cols=89 Identities=9% Similarity=-0.006 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFV 254 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 254 (323)
..++|.-+-+-....|. ....--+=+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34566665555554442 1111112234556777888777666543 3677777766644 46777777777777
Q ss_pred hccCCCCchhhhHHHhhh
Q 040801 255 KMLFPWNNYGQWAMSATV 272 (323)
Q Consensus 255 ~m~~~~~~~~~~~~~~~~ 272 (323)
++..+| +|..-.+...+
T Consensus 94 ~la~sg-~p~~q~Fa~g~ 110 (116)
T 2p58_C 94 RLARSQ-DPRIQTFVNGM 110 (116)
T ss_dssp HHTTCC-CHHHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHHHH
Confidence 777665 44444444443
No 304
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=34.97 E-value=1.1e+02 Score=21.11 Aligned_cols=74 Identities=11% Similarity=-0.059 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
|..+-+.+...|. ...+--+=+..+...| ++++|..+.+.+ ..||...|-.|-.. +.|..++++.-+.+
T Consensus 25 A~tIAdwL~~~~~--~E~v~lIR~sSLmNrG---~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 25 ALCIAEWLERLGQ--DEAARLIRISSLANQG---RYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHTT---CHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc--HHHHHHHHHHHHHcch---hHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 4444444444332 2222233334444555 445555544333 24555555444332 45555555555555
Q ss_pred HHHhC
Q 040801 221 VDESG 225 (323)
Q Consensus 221 m~~~g 225 (323)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 54444
No 305
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=34.25 E-value=1.2e+02 Score=21.07 Aligned_cols=18 Identities=11% Similarity=-0.177 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHhcc
Q 040801 240 YCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 240 ~~~~g~~~~a~~~~~~m~ 257 (323)
+...|++++|..+.+.+-
T Consensus 50 LmNrG~Yq~Al~l~~~~c 67 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA 67 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC
T ss_pred HHcchhHHHHHHhcCCCC
Confidence 444455555555554444
No 306
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=33.66 E-value=25 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMIV 118 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~~ 118 (323)
...+|+-|...|+.++|.+.++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 57789999999999999999999874
No 307
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=33.15 E-value=1.6e+02 Score=22.46 Aligned_cols=83 Identities=8% Similarity=-0.032 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHH
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTL 236 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 236 (323)
...|..|=+.....| +++-|.+.|....+ |..+.--|...|+.++...+-+.....| -++.-
T Consensus 34 ~~~Wk~Lg~~AL~~g---n~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~a 95 (177)
T 3mkq_B 34 SITWERLIQEALAQG---NASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSM 95 (177)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHH
T ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHH
Confidence 445666666666666 44555555554431 2223333333455555444433333332 13444
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 040801 237 MDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 237 i~~~~~~g~~~~a~~~~~~m~ 257 (323)
...+.-.|+++++.++|.+..
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHCC
Confidence 444455566666666665544
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.08 E-value=1.7e+02 Score=22.79 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=36.9
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--------HHHHHHHHHHcCC
Q 040801 101 TNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--------EKQLHSQAIKFGL 153 (323)
Q Consensus 101 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~ 153 (323)
.+..|++.|+-.+.+|.+.|..|.-..=..++-+.-..|. +...++.....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3558899999999999999988876666666666666665 4444444455553
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.03 E-value=94 Score=24.81 Aligned_cols=51 Identities=6% Similarity=0.003 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc
Q 040801 178 EAIKIFYRMEIENVKPNA-VTLVNVLTARARARDLRTVKRVHKCVDESGFWS 228 (323)
Q Consensus 178 ~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 228 (323)
+..++|..|...|+.-.. .-|...-..+-..|++.+|..||..=.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555543322 344444445555555555555555555555554
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.74 E-value=48 Score=22.44 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCC-------c---cch-hHHHhcccCCCCChhhHHHHHHHHHhCCChHHHH
Q 040801 59 IHAQMLRTSLFFDP-------C---ADY-HVRLVFSQISNPTIYTCNSIVRGYTNKNLHHEAF 110 (323)
Q Consensus 59 i~~~m~~~~~~~~~-------y---~~~-~a~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~ 110 (323)
+++.+.+.|+-... . ++. .|+++++.++......|..++.++...|+.+-|.
T Consensus 26 vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 66666666653333 1 011 6666777766666667777777776666655544
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.68 E-value=40 Score=20.65 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHh-cch
Q 040801 107 HEAFLFYHEMIVQGLIPDRFMFPSLFKSC-ADI 138 (323)
Q Consensus 107 ~~A~~~~~~m~~~g~~p~~~ty~~ll~~~-~~~ 138 (323)
++|.+.|.+|.+..-.+..-||...|+.+ ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56777777775544345556677777766 443
No 312
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=32.54 E-value=1.3e+02 Score=21.06 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-cCCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKPNAVTLVNVLTARARARDLRTVKRVHKCV 221 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 221 (323)
+|......++..+-.+ +|-++++.++..+ .|+ ...++..+++...+.|-++.. +.|..|
T Consensus 19 ~~~~~~dg~i~~fe~t-----~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m 78 (119)
T 1wty_A 19 KDEFIRDSAIQRFEFT-----FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEM 78 (119)
T ss_dssp CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHH
Confidence 3444444455444442 2444554444443 344 345555555555555555444 334444
No 313
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.80 E-value=1.2e+02 Score=20.91 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHhc-------CCCCChHHHHHHHHHHHHcCC
Q 040801 155 SDSFLHNTLINMYSSC-------WCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~-------g~~~~~~~a~~~~~~m~~~g~ 191 (323)
++.++-+.+++.+... |.....++|+++...+.+.|+
T Consensus 38 ~~CF~GsE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~gv 81 (105)
T 2ysr_A 38 GNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHV 81 (105)
T ss_dssp SSCEEHHHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHTTS
T ss_pred CccccchHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHCCC
Confidence 4566667777777776 555577888888888888775
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.59 E-value=1.5e+02 Score=21.17 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC--hHHHHHHHHHHHHhCCc
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD--LRTVKRVHKCVDESGFW 227 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 227 (323)
.+.++.-|...| +.++|.+-++++..-... ..++...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~---D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSG---DISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHC---CHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777787777 568888888887521111 23344455555555432 35566667666665543
No 315
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=30.37 E-value=2.6e+02 Score=24.03 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----cccHHHHHHHhcchhh----HHHHHHHHHHcCCCC
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD----RFMFPSLFKSCADIYV----EKQLHSQAIKFGLAS 155 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~~~----a~~~~~~m~~~g~~~ 155 (323)
....+|.-|...|+.++|.+.++++.. |+ ...+..+..++=+... +-.++..+.+.|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 357889999999999999999999863 43 2334444444443332 666666666655433
No 316
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=30.20 E-value=1.1e+02 Score=26.11 Aligned_cols=44 Identities=9% Similarity=-0.099 Sum_probs=23.6
Q ss_pred HHHHHHHhCCccChhhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 040801 217 VHKCVDESGFWSHVELKTTLMDAYCKCKFVSRAWDLFVKMLFPW 260 (323)
Q Consensus 217 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 260 (323)
+++.+.+.|+.|...++.=++..|++.=.++.+..+|+.+...|
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 44444455555555555555555555555555555555555443
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.16 E-value=2e+02 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=34.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--------HHHHHHHHHHcCC
Q 040801 102 NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--------EKQLHSQAIKFGL 153 (323)
Q Consensus 102 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~ 153 (323)
+..+++.|+-.+.+|.+.| .|.-..=..++-+.-..|. +...++..+..|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4578888888888888888 6665555666666666665 4455555555564
No 318
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=29.70 E-value=2e+02 Score=25.01 Aligned_cols=68 Identities=9% Similarity=-0.022 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040801 156 DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG 225 (323)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 225 (323)
+..+|..+|..+....++ ..+++..+++.|.... -++...=..|+....+.-..++...+.+-|.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~L-s~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDL-ARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCC-CTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 345788888888888888 7788999888887644 3455555555555556556777777777777654
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.28 E-value=1.3e+02 Score=22.32 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCC--hHHHHHHHHHHHHhCCccC
Q 040801 159 LHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARD--LRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 159 ~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 229 (323)
..+.+|.-|...| +.++|.+-++++..-... ..++...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 11 ki~~lL~EY~~~~---D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSG---DISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888888888 668999999888522111 23455555666666432 4557777777776665443
No 320
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=29.20 E-value=37 Score=23.75 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=40.0
Q ss_pred HHHHHHHHH--HcCCC-----------CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 141 EKQLHSQAI--KFGLA-----------SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 141 a~~~~~~m~--~~g~~-----------~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
.+++++.|. +.|++ |+.++-+.|++.+.+.+...+.++|+.+-..+.+.|+
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 456666666 34553 5677889999999999877788999999999998884
No 321
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.52 E-value=73 Score=23.08 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=42.5
Q ss_pred HHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 186 MEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 186 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
..+.|++++..= ..+++.+...++.-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 5 ~r~~g~r~T~qR-~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 5 GPPVKGRATRQR-AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp -----CHHHHHH-HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred cCCCCCccCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 344565554443 35677777777788899999999888777777777777788888887644
No 322
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.00 E-value=1.1e+02 Score=21.73 Aligned_cols=40 Identities=5% Similarity=0.013 Sum_probs=21.5
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 040801 184 YRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDE 223 (323)
Q Consensus 184 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (323)
+.+....+.|++..--.-|..+...++++.|..++-.+..
T Consensus 50 dkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 50 EQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344555544444444455566677777666666654
No 323
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.85 E-value=1.9e+02 Score=21.25 Aligned_cols=76 Identities=11% Similarity=-0.037 Sum_probs=56.9
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 152 GLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
+-.|+..+--.+--+++++...++..+++.++++....+..-.....=-|--++.+.|+++.|.+..+.+.+. +|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4456777766777788888877677889999999987653223333334667899999999999999999886 565
No 324
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.73 E-value=80 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHH
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSR 248 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 248 (323)
.+++.+...+..-.|.++++.+.+.+-..+..|.---++.+...|-+.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4566666667777888999998887766677777777777888776654
No 325
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.01 E-value=91 Score=22.51 Aligned_cols=15 Identities=0% Similarity=-0.243 Sum_probs=7.2
Q ss_pred HHHhCCChHHHHHHH
Q 040801 99 GYTNKNLHHEAFLFY 113 (323)
Q Consensus 99 ~~~~~g~~~~A~~~~ 113 (323)
..++.|+.+....++
T Consensus 14 ~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 14 EAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHH
Confidence 344555555544443
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.94 E-value=94 Score=23.25 Aligned_cols=73 Identities=8% Similarity=-0.156 Sum_probs=35.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCW 171 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g 171 (323)
+...+..|+.+....++..-...--..|..-++.|..++ ..|+ .++.+.+.+.|..++... ..+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNND-IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 344456788777766664321110122333344444443 3333 345566667777665332 123344445555
No 327
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.56 E-value=2.1e+02 Score=21.27 Aligned_cols=128 Identities=7% Similarity=0.061 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFLHNTLINMYSSC 170 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 170 (323)
..++..+.-+...-.-. .++-..+.+.|+.++ .+..+++.+.+.|+--|..--...+....+.
T Consensus 18 ~a~~~Al~~Ls~r~~s~--~EL~~KL~~kg~~~e---------------~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~ 80 (162)
T 3dfg_A 18 TPVQRALGLLVHREHSK--KELNRKLQARGIEPE---------------AAQAAVERLAGEGWQDDVRFAASVVRNRASS 80 (162)
T ss_dssp CHHHHHHHHHHHSCCCH--HHHHHHHHHTTCCHH---------------HHHHHHHHHHHTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhchhhhH--HHHHHHHHhcCCCHH---------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 34666666555543332 245566666665432 1566777777888776665555666666554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC-C-ccChhhHHHHHHHHHhcCC
Q 040801 171 WCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG-F-WSHVELKTTLMDAYCKCKF 245 (323)
Q Consensus 171 g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~-~p~~~~~~~li~~~~~~g~ 245 (323)
| ..-.++-.++..+|+..+ +....+..+ .....+.|..+++. +.+ . ..+.....-++..+.+.|-
T Consensus 81 ~-----~G~~~I~~eL~~KGI~~~--~I~~al~~~-~~de~e~a~~l~~K--k~~~~~~~~~~~k~K~~~~L~rrGF 147 (162)
T 3dfg_A 81 G-----YGPLHIRAELGTHGLDSD--AVSAAMATF-EGDWTENALDLIRR--RFGEDGPVDLAQRRKAADLLARRGF 147 (162)
T ss_dssp T-----CCHHHHHHHHHHTTCCHH--HHHHHHTTC-CSCHHHHHHHHHHH--HHCTTCCCSHHHHHHHHHHHHHTTC
T ss_pred c-----ccHHHHHHHHHHcCCCHH--HHHHHHHhC-cHhHHHHHHHHHHH--hcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3 245677778888887543 222233222 11123334444332 222 1 2233445556666666663
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.13 E-value=1.1e+02 Score=18.60 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCccC
Q 040801 176 PDEAIKIFYRMEIENVKPNAV--TLVNVLTARARARDLRTVKRVHKCVDESGFWSH 229 (323)
Q Consensus 176 ~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 229 (323)
.++.++.+++|- |+.. +...++.+ ..|+++.|...+-.|...+..|+
T Consensus 9 ~ee~l~~L~emF-----P~ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMF-----PNMDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHC-----SSSCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHHC-----CCCCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 355666666662 3332 22222222 34566666666665555444443
No 329
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.97 E-value=3.2e+02 Score=24.19 Aligned_cols=26 Identities=4% Similarity=-0.088 Sum_probs=20.5
Q ss_pred HhcCCHHHHHHHHHhccCCCCchhhh
Q 040801 241 CKCKFVSRAWDLFVKMLFPWNNYGQW 266 (323)
Q Consensus 241 ~~~g~~~~a~~~~~~m~~~~~~~~~~ 266 (323)
++.++.+.|..++.+|.+.|.+|...
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i 291 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYV 291 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 35688999999999998887777655
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.85 E-value=2.6e+02 Score=22.08 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=41.6
Q ss_pred HHHHHH---hCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--------HHHHHHHHHHcCCC
Q 040801 96 IVRGYT---NKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--------EKQLHSQAIKFGLA 154 (323)
Q Consensus 96 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--------a~~~~~~m~~~g~~ 154 (323)
+|+++- +..+++.|+-.+.+|.+.|..|.-..=..++-+.-..|. |...++.....|..
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 444444 458899999999999999988877766677777666666 55555556666653
No 331
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=24.82 E-value=1e+02 Score=22.40 Aligned_cols=147 Identities=12% Similarity=-0.004 Sum_probs=69.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCCC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCWCLD 174 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~ 174 (323)
+...++.|+.+....+++.-...--..|..-++.|..++. .|. .++.+.+.+.|..++... ..+.+...+..|.
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~-~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-- 81 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASA-FGE-IETVRFLLEWGADPHILAKERESALSLASTGGY-- 81 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHH-TTC-HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC--
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHH-cCC-HHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC--
Confidence 3445677777766665543211001234444444544443 333 344455556666554321 2234444555552
Q ss_pred ChHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH--HHHHHHHHhcCCHHHHH
Q 040801 175 QPDEAIKIFYRMEIENVKPNAVT--LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK--TTLMDAYCKCKFVSRAW 250 (323)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~ 250 (323)
.+. ++.+.+.|..++... -.+.+...+..|+.+.+. .+.+.|..++.... .+-++.-++.|+.+-+.
T Consensus 82 --~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (172)
T 3v30_A 82 --TDI---VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE----ALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152 (172)
T ss_dssp --HHH---HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred --HHH---HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHHhCcHHHHH
Confidence 233 333345555544321 123344444556665444 44455666654321 23445556667777666
Q ss_pred HHHHhc
Q 040801 251 DLFVKM 256 (323)
Q Consensus 251 ~~~~~m 256 (323)
.+++..
T Consensus 153 ~L~~~~ 158 (172)
T 3v30_A 153 VIENHI 158 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 332
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=24.75 E-value=1.9e+02 Score=24.00 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHH----HHHhcCCHHHHHHHHH
Q 040801 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMD----AYCKCKFVSRAWDLFV 254 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~a~~~~~ 254 (323)
++++.+...|+.|...++..++..+++.=.++.+.++|+.+...|...=..+.-+++. ...+ .+.++....++
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4556666778888888888888888887788888889988887774321112222222 1223 37777777775
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.20 E-value=1.4e+02 Score=18.85 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=27.6
Q ss_pred HHHCCCCCCcccHHHHHHHhcchh-h---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 040801 116 MIVQGLIPDRFMFPSLFKSCADIY-V---EKQLHSQAIKFGLASDSFLHNTLINMYSSCW 171 (323)
Q Consensus 116 m~~~g~~p~~~ty~~ll~~~~~~~-~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 171 (323)
|++.|+..+..- ..++..+...+ . +.++++.+.+.+...+..|-.-.++.+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 455555554433 33444444443 2 6666666655554444555455555555555
No 334
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.12 E-value=2.3e+02 Score=21.19 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHH
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKT 234 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 234 (323)
++..+-...+.++++.|. .++...+.++.. .+|...=...+.++.+.++.+....+.+.+ + .++..+-.
T Consensus 88 ~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~---d~~~~vr~ 156 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD----ERAVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKAL-K---DEDGWVRQ 156 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC----GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHT-T---CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc----HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-c---CCCHHHHH
Confidence 555566666666666662 234444444432 345555555666666666544333332222 2 24555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
..+.++.+.|..+ +...+.++.
T Consensus 157 ~A~~aL~~~~~~~-~~~~L~~~l 178 (201)
T 3ltj_A 157 SAADALGEIGGER-VRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHCSHH-HHHHHHHHH
T ss_pred HHHHHHHHhCchh-HHHHHHHHH
Confidence 6666666666533 344444443
No 335
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.81 E-value=2.2e+02 Score=20.99 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 194 (323)
+..+++.+.+.|+--|..--.+.+....+.| .....+-.++..+|+.++
T Consensus 49 i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g-----~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 49 YERVIAWCHEHGYLDDSRFVARFIASRSRKG-----YGPARIRQELNQKGISRE 97 (159)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHcCCCHH
Confidence 6677777778887766666666777666654 235566777777787544
No 336
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=23.29 E-value=3.1e+02 Score=22.54 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCcc----
Q 040801 155 SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIEN--VKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWS---- 228 (323)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---- 228 (323)
-|...-..|+.-+|-.| ++++|.+-++...+.. ..|...+|..+|++ +..=.++-.-+-.|
T Consensus 29 ~da~~R~~LfqLLcv~G---~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----------E~~R~~vfaG~~~P~~~g 95 (273)
T 1zbp_A 29 KDASLRSSFIELLCIDG---DFERADEQLMQSIKLFPEYLPGASQLRHLVKA----------AQARKDFAQGAATAKVLG 95 (273)
T ss_dssp TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----------HHHHHHHTTSCCCEECCC
T ss_pred cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----------HHHHHHHHcCCCCCCCCC
Confidence 36666777888888888 6678877776665532 23344455555543 33333333333222
Q ss_pred -ChhhHHHHHHHHHh--cCCHHHHHHHHHhcc
Q 040801 229 -HVELKTTLMDAYCK--CKFVSRAWDLFVKML 257 (323)
Q Consensus 229 -~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 257 (323)
...-...|+.+... .|+.++|.++-+...
T Consensus 96 ~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 96 ENEELTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 12234455555443 488888887776663
No 337
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.25 E-value=1.2e+02 Score=20.38 Aligned_cols=37 Identities=5% Similarity=-0.022 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 209 RDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 209 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
...++|.++++.+.++| ...|..+++++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 34555666666655554 34556666666555554444
No 338
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.16 E-value=2.1e+02 Score=20.45 Aligned_cols=143 Identities=14% Similarity=0.024 Sum_probs=67.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCC---CCcccHHHHHHHhcchhhHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcC
Q 040801 97 VRGYTNKNLHHEAFLFYHEMIVQGLI---PDRFMFPSLFKSCADIYVEKQLHSQAIKFGLASDSFL--HNTLINMYSSCW 171 (323)
Q Consensus 97 i~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~ty~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g 171 (323)
+...++.|+.+....+++. |.. .|..-++.|..++. .|+ .++.+.+.+.|..++... ..+.+...+..|
T Consensus 7 L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~-~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAA-HGQ-IAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHH-TTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHH-CCC-HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 4445667776666555543 322 23333444444433 333 344555666676654322 123444445555
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhH--HHHHHHHHhcCCHH
Q 040801 172 CLDQPDEAIKIFYRMEIENVKPNAVT--LVNVLTARARARDLRTVKRVHKCVDESGFWSHVELK--TTLMDAYCKCKFVS 247 (323)
Q Consensus 172 ~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~ 247 (323)
. .+..++ +.+.|..++... -.+.+...+..|+.+.+. .+.+.|..++.... .+-++.-++.|+.+
T Consensus 81 ~----~~~v~~---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 149 (167)
T 3v31_A 81 Y----TDIVKM---LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK----MLLESGADPTIETDSGYNSMDLAVALGYRS 149 (167)
T ss_dssp C----HHHHHH---HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred C----HHHHHH---HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 2 233333 334454443321 123344444556665443 44455666543322 23445556667777
Q ss_pred HHHHHHHhc
Q 040801 248 RAWDLFVKM 256 (323)
Q Consensus 248 ~a~~~~~~m 256 (323)
-+..+++..
T Consensus 150 ~~~~L~~~~ 158 (167)
T 3v31_A 150 VQQVIESHL 158 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.16 E-value=84 Score=24.87 Aligned_cols=40 Identities=8% Similarity=-0.148 Sum_probs=28.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCcc-------cHHHHHHHh
Q 040801 96 IVRGYTNKNLHHEAFLFYHEMIVQGLIPDRF-------MFPSLFKSC 135 (323)
Q Consensus 96 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------ty~~ll~~~ 135 (323)
.|...++.|+.+....+++.+.+.|..++.. -.+.|..+.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~ 54 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL 54 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHH
Confidence 3455668899999999999888888776644 345565554
No 340
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=22.90 E-value=56 Score=23.54 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHHHHHHH--cCCC-----------CchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 040801 141 EKQLHSQAIK--FGLA-----------SDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENV 191 (323)
Q Consensus 141 a~~~~~~m~~--~g~~-----------~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~ 191 (323)
.+++++.|.. .|++ |+.++-+.|++.+.+.+.....++|+.+-..+.+.|+
T Consensus 18 l~~Lv~~Mqd~~~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~~~~sR~EAv~lg~~Ll~~G~ 81 (127)
T 2cso_A 18 LGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGY 81 (127)
T ss_dssp HHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCceeeeEEeccEEecceeechHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 5566777764 4554 4677789999999999876788999999999999884
No 341
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.68 E-value=2.9e+02 Score=21.95 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCC
Q 040801 140 VEKQLHSQAIKFGLAS-DSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPN 194 (323)
Q Consensus 140 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~ 194 (323)
+..++|..|...|+-- -+..|-..-..+-..| ++++|.++|+.=.+.+-+|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g---~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRG---LFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCccH
Confidence 3889999999998754 3556777888888888 77999999999888888883
No 342
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=22.57 E-value=2.4e+02 Score=23.20 Aligned_cols=70 Identities=9% Similarity=-0.049 Sum_probs=46.8
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhC--CccChhhHHHHHH
Q 040801 165 NMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESG--FWSHVELKTTLMD 238 (323)
Q Consensus 165 ~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~ 238 (323)
....+.| .++++++-..+-.+.. .-|...=..+++-+|-.|+++.|.+=++...+.. ..|...+|-.+|.
T Consensus 5 ~~ll~~g---~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEG---QLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTT---CHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 3445666 5578888777766654 4466666678888999999999888888776642 2333445555555
No 343
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.08 E-value=5.7e+02 Score=25.08 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=64.5
Q ss_pred HHHHHhcchhh------HHHHHHHHHHcC----CCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHH
Q 040801 130 SLFKSCADIYV------EKQLHSQAIKFG----LASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLV 199 (323)
Q Consensus 130 ~ll~~~~~~~~------a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 199 (323)
.++...|+.|. |.+.|+.....+ +.||.. +.+...-.+.| +.++-..+++..... .+..--.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g---~~~~~~~l~~~~~~~---~~~~ek~ 762 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQG---GQDQWDFAWGQLQQA---QLVNEAD 762 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHS---CHHHHHHHHHHHHHC---CSHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhC---CHHHHHHHHHHHHcc---CCHHHHH
Confidence 45667777776 677777765432 455533 22333334556 334444555555543 2344456
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC-CccChhhHHHHHHHHHhcC-CHHHHHHHHH
Q 040801 200 NVLTARARARDLRTVKRVHKCVDESG-FWSHVELKTTLMDAYCKCK-FVSRAWDLFV 254 (323)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~ 254 (323)
.++.+++...+.....++++...... +++. . ...++.+...+. ..+.|++.+.
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d-~~~~~~~v~~n~~g~~~~~~f~~ 817 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-D-ATSTINSIASNVIGQPLAWDFVQ 817 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-G-HHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-h-HHHHHHHHhcChHHHHHHHHHHH
Confidence 78999999999999988888876533 3332 2 233444444332 2345555544
No 344
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=21.90 E-value=6.1e+02 Score=25.38 Aligned_cols=154 Identities=5% Similarity=-0.032 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHhcchhh--HHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 040801 91 YTCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPDRFMFPSLFKSCADIYV--EKQLHSQAIKFGLASDSFLHNTLINMYS 168 (323)
Q Consensus 91 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ll~~~~~~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~ 168 (323)
..|..|++. .+.=+.++-.++|.+.... ...-..++.++...|. +..+..+..+.+--.+...-..+..+.
T Consensus 311 ~~f~~Lv~~-lR~~~~e~L~~l~~~~~~~-----~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~~~- 383 (1056)
T 1lsh_A 311 AKFLRLTAF-LRNVDAGVLQSIWHKLHQQ-----KDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTL- 383 (1056)
T ss_dssp HHHHHHHHH-HTTSCHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHhcc-----HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHhh-
Confidence 446666655 4666777777888887642 2334568888888888 666666666554222222222222222
Q ss_pred hcCCCCChHHHHHHHHHHHHcC-CCCC-------hHHHHHHHHHHhccCC---hHHHHHHHHHH---HHhCCccChhhHH
Q 040801 169 SCWCLDQPDEAIKIFYRMEIEN-VKPN-------AVTLVNVLTARARARD---LRTVKRVHKCV---DESGFWSHVELKT 234 (323)
Q Consensus 169 ~~g~~~~~~~a~~~~~~m~~~g-~~p~-------~~t~~~li~~~~~~~~---~~~a~~~~~~m---~~~g~~p~~~~~~ 234 (323)
..-.. -.+.++.+.++.... +..+ ..+|.+|++-+|.... .+....+.+.+ .+.+ |..--.
T Consensus 384 ~~~~P--t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~---~~~~~~ 458 (1056)
T 1lsh_A 384 SNQQA--TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA---KEEEIV 458 (1056)
T ss_dssp HTCCC--CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT---CHHHHH
T ss_pred ccCCC--CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC---ChHHHH
Confidence 22223 267777777776532 2222 3478888888886531 12233333333 2332 455556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 040801 235 TLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 235 ~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
..|.++...|..+ +...+.+..
T Consensus 459 ~~LkaLGN~g~p~-~l~~l~~~l 480 (1056)
T 1lsh_A 459 LALKALGNAGQPN-SIKKIQRFL 480 (1056)
T ss_dssp HHHHHHHHHTCGG-GHHHHHTTS
T ss_pred HHHHHhhccCChh-HHHHHHHhh
Confidence 7778888888765 444555553
No 345
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.84 E-value=1.4e+02 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
.+.+|.-|...|+.++|.+.++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 5789999999999999999999986
No 346
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.68 E-value=1.5e+02 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 040801 93 CNSIVRGYTNKNLHHEAFLFYHEMI 117 (323)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~~~~m~ 117 (323)
.+.+|.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 5788888888899999999998886
No 347
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.53 E-value=2.7e+02 Score=21.05 Aligned_cols=112 Identities=6% Similarity=-0.010 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q 040801 141 EKQLHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKC 220 (323)
Q Consensus 141 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 220 (323)
+..+++.+.+.|+--|..--.+.+....+.|.. ...++-.++..+|+.++.+ ...+..+......+.|..+++.
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~----G~~~I~~eL~~KGI~~~~I--~~al~~~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDK----GPKVIKLNLSKKGIDDNIA--EDALILYTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC----CHHHHHHHHHTTTCCHHHH--HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc----cHHHHHHHHHHcCCCHHHH--HHHHHhCCchhHHHHHHHHHHH
Confidence 778889999999888887778888888776533 4677788888899864422 2233221111123344444444
Q ss_pred HHHh-CCccChhhHHHHHHHHHhcC-CHHHHHHHHHhccC
Q 040801 221 VDES-GFWSHVELKTTLMDAYCKCK-FVSRAWDLFVKMLF 258 (323)
Q Consensus 221 m~~~-g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 258 (323)
-... .-.++.....-++..+.+.| ..+.+..+++++..
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 3221 11122334556666777777 46666667666643
No 348
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.51 E-value=2.3e+02 Score=20.39 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCh
Q 040801 144 LHSQAIKFGLASDSFLHNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVNVLTARARARDL 211 (323)
Q Consensus 144 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 211 (323)
+.+.+.+.|++++.. --.++..+...+. .-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 9 ~~~~l~~~g~r~T~q-R~~Il~~L~~~~~---~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITPQ-RHAILEYLVNSMA---HPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCHH-HHHHHHHHHHCSS---CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCC---CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344567777766543 3444555554442 236888888887776555555554555555554443
No 349
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=21.42 E-value=2.4e+02 Score=20.54 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-cCCCC---ChHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCccChh
Q 040801 157 SFLHNTLINMYSSCWCLDQPDEAIKIFYRMEI-ENVKP---NAVTLVNVLTARARARDLRTVKRVHKCVDE-SGFWSHVE 231 (323)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~~~~a~~~~~~m~~-~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~ 231 (323)
......+|..+-. -+|-++++.++..+ .|..| +..++..+++...+.|-++.. ..|..|.. ++ ..++
T Consensus 40 ~~~~dg~iq~fe~-----t~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN--~tvH 111 (146)
T 1jog_A 40 DTLIAGAIQKFEF-----VYELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRN--ITSH 111 (146)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHT--TGGG
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhh--Hhcc
Confidence 3344455555555 23566666665554 56554 467778888888888877666 45555543 33 2455
Q ss_pred hHHHHHH--HHHh-cCCHHHHHHHHHhccC
Q 040801 232 LKTTLMD--AYCK-CKFVSRAWDLFVKMLF 258 (323)
Q Consensus 232 ~~~~li~--~~~~-~g~~~~a~~~~~~m~~ 258 (323)
+|+.... .|.. ...++....+.+.+.+
T Consensus 112 ~Y~e~~a~~v~~~I~~~l~~f~~l~~~l~~ 141 (146)
T 1jog_A 112 TYDQEKAMAVYAQIDDFLIESSFLLEQLRQ 141 (146)
T ss_dssp TTSHHHHHHHHHTHHHHHHHHHHHHHHHHC
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5553322 2222 1255566666666654
No 350
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.29 E-value=1.8e+02 Score=19.07 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHhCCccChhhHHHHHHHHHhcCCHHHH
Q 040801 181 KIFYRMEIENVKPNAVTLVNVLTARARARDLRTVKRVHKCVDESGFWSHVELKTTLMDAYCKCKFVSRA 249 (323)
Q Consensus 181 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 249 (323)
.+++.+.+.|+ .+..-+..+-. .....++|..+++.+.++| ...|..+++++...|...-|
T Consensus 26 ~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 34445554443 23333333322 2455666666666665554 45566666666666554433
No 351
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.57 E-value=1.2e+02 Score=18.35 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=17.2
Q ss_pred CCChHHHHHHHHHHHHcC-CCCCh
Q 040801 173 LDQPDEAIKIFYRMEIEN-VKPNA 195 (323)
Q Consensus 173 ~~~~~~a~~~~~~m~~~g-~~p~~ 195 (323)
+ |++.|...|.++...| +.|+.
T Consensus 34 W-d~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 W-DYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp T-CHHHHHHHHHHHHHTTCSCGGG
T ss_pred C-CHHHHHHHHHHHHHcCCCCHHH
Confidence 5 8999999999998765 55543
No 352
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=20.46 E-value=3.8e+02 Score=22.46 Aligned_cols=151 Identities=11% Similarity=-0.102 Sum_probs=83.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH----HHCCCCCCcccHHHHHHHhcchhh-HHHHHHHHHHcCCCCchHHHHHHHHH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEM----IVQGLIPDRFMFPSLFKSCADIYV-EKQLHSQAIKFGLASDSFLHNTLINM 166 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~ty~~ll~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~ 166 (323)
.|-++..-|.+.+++++|.+++..- .+.|- +++ .++ +.-+.+...+.+++++...-.-|+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q------~~s-------a~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQ------GGS-------GTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHH-------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCC------cch-------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4666777788888888888876542 12211 111 111 44556666777788887777777777
Q ss_pred HHhcCCCCChHHHHHHHHHHHH----cC--CCCChHHHHHHHHHHhccCChHHHHHHH----------------HHHHHh
Q 040801 167 YSSCWCLDQPDEAIKIFYRMEI----EN--VKPNAVTLVNVLTARARARDLRTVKRVH----------------KCVDES 224 (323)
Q Consensus 167 ~~~~g~~~~~~~a~~~~~~m~~----~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~----------------~~m~~~ 224 (323)
+.....- . ..=.++.+++.. .| -.-|......+-..|.+.+++.+|+.-| +...+.
T Consensus 102 ~~~~p~~-~-~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 102 IAELDPS-E-PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HTTCCTT-C-TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCC-C-chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7664422 1 112334444432 22 1225556666667777777777766522 122222
Q ss_pred --CCccChhhH-HHHHHHHHhcCCHHHHHHHHHhcc
Q 040801 225 --GFWSHVELK-TTLMDAYCKCKFVSRAWDLFVKML 257 (323)
Q Consensus 225 --g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 257 (323)
|.+-....| ...+--|.-.|++..|..+|+...
T Consensus 180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 432222222 233445667899999999988764
No 353
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.40 E-value=4.3e+02 Score=23.05 Aligned_cols=210 Identities=7% Similarity=-0.112 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHhcchhh---HHHHHHHHHH---cCCCCch----HH
Q 040801 92 TCNSIVRGYTNKNLHHEAFLFYHEMIVQGLIPD--RFMFPSLFKSCADIYV---EKQLHSQAIK---FGLASDS----FL 159 (323)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~~~---a~~~~~~m~~---~g~~~~~----~~ 159 (323)
+...+-.-|.+.|++++|.+.|.+++..-..+. ...+-.+++.+...++ +......... .+-.++. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 466788899999999999999999987533332 3556666777777777 5555555432 2323332 22
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCCChHHHHH-----HHHHHhccCChHHHHHHHHHHHH---hCCccChh
Q 040801 160 HNTLINMYSSCWCLDQPDEAIKIFYRMEIENVKPNAVTLVN-----VLTARARARDLRTVKRVHKCVDE---SGFWSHVE 231 (323)
Q Consensus 160 ~~~li~~~~~~g~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-----li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~ 231 (323)
|..++.. ..+ ++.+|-+.|-+....--..+..++.. ++-+.....+.+.-..+++.-.- ....|...
T Consensus 213 ~~gl~~l--~~r---~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~ 287 (429)
T 4b4t_R 213 YYGIHCL--AVR---NFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQ 287 (429)
T ss_dssp HHHHGGG--GTS---CHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHH
T ss_pred HHHHHHH--HhC---hHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHH
Confidence 3333322 223 77899888888765322223333322 22222322332222222221111 12234444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC----C-Cchh---------hhHHHhhhccCCCCCcchhhhhhhCCCCchhHH
Q 040801 232 LKTTLMDAYCKCKFVSRAWDLFVKMLFP----W-NNYG---------QWAMSATVGPQGLVGRHSTAHQISGPCPKKAHK 297 (323)
Q Consensus 232 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~---------~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 297 (323)
.+..++.++..+...+-...+.+..... . ..+. ...+...+..+... ..+.-...++. +.+.++
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I-~l~~mA~~l~~-s~~~~E 365 (429)
T 4b4t_R 288 SISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTL-SLKSMASAFGV-SVAFLD 365 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEE-EHHHHHHHHTS-CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhcee-eHHHHHHHhCc-CHHHHH
Confidence 5566677666655444333333332221 1 1110 11233333333322 11222233443 455667
Q ss_pred HHHHHHHhccC
Q 040801 298 LFFFSMLKKVH 308 (323)
Q Consensus 298 ~~~~~M~~~g~ 308 (323)
.....|+..|.
T Consensus 366 ~~L~~lI~~g~ 376 (429)
T 4b4t_R 366 NDLGKFIPNKQ 376 (429)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHcCC
Confidence 77788888775
Done!