Query 040802
Match_columns 245
No_of_seqs 47 out of 49
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 11:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07172 GRP: Glycine rich pro 56.8 9.2 0.0002 30.4 2.3 25 8-32 1-25 (95)
2 PRK02710 plastocyanin; Provisi 46.6 24 0.00052 28.2 3.2 18 37-55 42-59 (119)
3 cd06664 IscU_like Iron-sulfur 35.1 36 0.00078 26.9 2.6 25 144-168 37-61 (123)
4 TIGR01994 SUF_scaf_2 SUF syste 34.6 36 0.00078 28.1 2.6 26 143-168 39-64 (137)
5 PF05781 MRVI1: MRVI1 protein; 34.5 33 0.00071 35.3 2.8 41 11-55 478-519 (538)
6 PRK10002 outer membrane protei 25.2 80 0.0017 29.6 3.5 46 8-62 1-47 (362)
7 TIGR03419 NifU_clost FeS clust 23.8 81 0.0017 25.5 2.8 27 142-168 34-60 (121)
8 PF10916 DUF2712: Protein of u 23.6 69 0.0015 27.9 2.5 29 12-40 10-38 (146)
9 PRK15306 putative fimbrial pro 21.1 44 0.00095 29.1 0.8 11 33-43 28-44 (190)
10 PRK11325 scaffold protein; Pro 18.7 1.7E+02 0.0037 23.9 3.7 26 143-168 40-66 (127)
No 1
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.82 E-value=9.2 Score=30.45 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=13.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhcc
Q 040802 8 MMRRRMIMVTVHMMIVVMMIKNYAY 32 (245)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (245)
|-+|++++|.+...++.++++.++|
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 5678877665544444444444444
No 2
>PRK02710 plastocyanin; Provisional
Probab=46.55 E-value=24 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=10.9
Q ss_pred ccccCCCCCCeeecCceEE
Q 040802 37 IIFNPCDDSKVKRWDGFTF 55 (245)
Q Consensus 37 ~vy~PC~d~~v~rgDgft~ 55 (245)
-.|+| ..-.|++||.++|
T Consensus 42 ~~F~P-~~i~v~~Gd~V~~ 59 (119)
T PRK02710 42 LAFEP-STLTIKAGDTVKW 59 (119)
T ss_pred eEEeC-CEEEEcCCCEEEE
Confidence 46676 3335777776554
No 3
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=35.12 E-value=36 Score=26.88 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=21.4
Q ss_pred EEEEEEEecceEEEEEEecCCcCCC
Q 040802 144 LTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 144 fTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
+++=+.++.|+++++.|+..||..|
T Consensus 37 v~l~l~i~~~~I~d~~f~~~GC~i~ 61 (123)
T cd06664 37 ITLYLKVEDGRITDAKFQGFGCAIS 61 (123)
T ss_pred EEEEEEEcCCEEEEEEEEecCcHHH
Confidence 5666677889999999999999876
No 4
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=34.60 E-value=36 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.569 Sum_probs=21.8
Q ss_pred eEEEEEEEecceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++.|+++++.|+..||..|
T Consensus 39 ~i~l~l~v~~~~I~d~~f~~~GCais 64 (137)
T TIGR01994 39 EITLTVKLEGDRIEDIAFEGEGCSIS 64 (137)
T ss_pred EEEEEEEEcCCeEEEEEEEecccHHH
Confidence 35666677899999999999999876
No 5
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=34.54 E-value=33 Score=35.26 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhcccCCCccccCCCC-CCeeecCceEE
Q 040802 11 RRMIMVTVHMMIVVMMIKNYAYADTNIIFNPCDD-SKVKRWDGFTF 55 (245)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~d~n~vy~PC~d-~~v~rgDgft~ 55 (245)
|.+.|.+..+|++|++++.. +..+|.+|.| ++++-||..+=
T Consensus 478 K~LWIsvAliVLLAaLlSfL----tg~~fq~~vdaAp~~~GdSw~S 519 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFL----TGLFFQRCVDAAPVGTGDSWCS 519 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hcccccchhccCCCCCCccchh
Confidence 55566666666666666663 4589999998 69999998764
No 6
>PRK10002 outer membrane protein F; Provisional
Probab=25.21 E-value=80 Score=29.59 Aligned_cols=46 Identities=30% Similarity=0.530 Sum_probs=28.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhcccCCCccccCCCC-CCeeecCceEEEEEeccc
Q 040802 8 MMRRRMIMVTVHMMIVVMMIKNYAYADTNIIFNPCDD-SKVKRWDGFTFGLAFSTK 62 (245)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~n~vy~PC~d-~~v~rgDgft~Glaf~~~ 62 (245)
||.|+++-|.+++..++ ..+ ....||+ .| +.|.-.-.+ .||.+...
T Consensus 1 ~mkktl~a~a~~a~~~a---~~a---~A~~vy~--~dg~sVtLYG~i-~~v~~~~~ 47 (362)
T PRK10002 1 MMKRNILAVIVPALLVA---GTA---NAAEIYN--KDGNKVDLYGKA-VGLHYFSK 47 (362)
T ss_pred CccHhHHHHHHHHHHHh---ccc---ceeeEee--cCCCEEEEeCEE-EEEEEEec
Confidence 79998887666654222 221 2245887 54 567777777 78877543
No 7
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=23.76 E-value=81 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.573 Sum_probs=22.4
Q ss_pred EeEEEEEEEecceEEEEEEecCCcCCC
Q 040802 142 TNLTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 142 tsfTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
-.++|-+.++.|+++++.|...||..|
T Consensus 34 D~i~l~l~i~~~~I~d~~f~~~GC~is 60 (121)
T TIGR03419 34 DIMKIFLKVEDDIIKDVKFKTFGCGAA 60 (121)
T ss_pred cEEEEEEEEcCCEEEEEEEEEeccHHH
Confidence 346677788899999999999999865
No 8
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=23.61 E-value=69 Score=27.91 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHhhhhcccCCCcccc
Q 040802 12 RMIMVTVHMMIVVMMIKNYAYADTNIIFN 40 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~d~n~vy~ 40 (245)
||+|+.+.++.+.......+|.|.|+-|+
T Consensus 10 ~~~~a~~~~~~~~a~~~~~~Asdn~i~F~ 38 (146)
T PF10916_consen 10 RLILAAAIGISVFAFVSHAAASDNNIPFS 38 (146)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCceE
Confidence 45666555555555555566778888774
No 9
>PRK15306 putative fimbrial protein StkD; Provisional
Probab=21.10 E-value=44 Score=29.10 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.0
Q ss_pred cCCCccc------cCCC
Q 040802 33 ADTNIIF------NPCD 43 (245)
Q Consensus 33 ~d~n~vy------~PC~ 43 (245)
+|.+..| .||.
T Consensus 28 ~~g~I~F~G~Iv~~~C~ 44 (190)
T PRK15306 28 TNLDVNFTATILETTCD 44 (190)
T ss_pred CCcEEEEEEEEecCCce
Confidence 4666666 8999
No 10
>PRK11325 scaffold protein; Provisional
Probab=18.66 E-value=1.7e+02 Score=23.87 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=21.4
Q ss_pred eEEEEEEEe-cceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQ-QGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~-kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++ .|+++++.|+..||..|
T Consensus 40 ~i~l~l~v~~~~~I~d~~f~~~GC~is 66 (127)
T PRK11325 40 VMKLQIKVNDEGIIEDAKFKTYGCGSA 66 (127)
T ss_pred EEEEEEEECCCCeEEEEEEEeeCCHHH
Confidence 356667776 69999999999999866
Done!