Query 040802
Match_columns 245
No_of_seqs 47 out of 49
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 19:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c75_A Amicyanin; copper prote 49.4 4.1 0.00014 31.7 0.4 16 38-54 56-71 (132)
2 2qq4_A Iron-sulfur cluster bio 33.8 36 0.0012 27.0 3.7 25 144-168 43-67 (138)
3 2z7e_A ISCU protein, NIFU-like 29.9 35 0.0012 28.0 3.1 26 143-168 39-66 (157)
4 1su0_B NIFU like protein ISCU; 27.4 45 0.0015 27.2 3.3 26 143-168 43-68 (159)
5 3lvl_A NIFU-like protein; prot 24.7 59 0.002 25.5 3.4 26 143-168 41-67 (129)
6 4eb5_C NIFU protein (NIFU-1); 23.2 64 0.0022 26.5 3.4 26 143-168 36-61 (153)
7 1xjs_A NIFU-like protein; SR17 22.5 44 0.0015 26.9 2.3 26 143-168 44-69 (147)
8 3dmc_A NTF2-like protein; stru 19.4 1.3E+02 0.0045 22.5 4.3 22 143-164 108-131 (134)
9 4gd5_A Phosphate ABC transport 19.1 24 0.00081 29.5 0.0 16 6-21 2-17 (279)
10 4dvc_A Thiol:disulfide interch 14.7 49 0.0017 24.9 0.8 21 121-141 142-162 (184)
No 1
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=49.44 E-value=4.1 Score=31.70 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=7.4
Q ss_pred cccCCCCCCeeecCceE
Q 040802 38 IFNPCDDSKVKRWDGFT 54 (245)
Q Consensus 38 vy~PC~d~~v~rgDgft 54 (245)
.|+| ..-+|+.||.++
T Consensus 56 ~F~P-~~i~V~~GdtV~ 71 (132)
T 3c75_A 56 KYLT-PEVTIKAGETVY 71 (132)
T ss_dssp EESS-SEEEECTTCEEE
T ss_pred EEeC-CEEEECCCCEEE
Confidence 4455 223455555444
No 2
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=33.83 E-value=36 Score=27.04 Aligned_cols=25 Identities=12% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEEEEecceEEEEEEecCCcCCC
Q 040802 144 LTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 144 fTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
++|-+.++.|+++++.|+..||..+
T Consensus 43 i~l~l~v~~~~I~d~~f~~~GCais 67 (138)
T 2qq4_A 43 VEVMVLLEGDTIADIRFQGQGCAIS 67 (138)
T ss_dssp EEEEEEEETTEEEEEEEEEECCHHH
T ss_pred EEEEEEECCCEEEEEEEEecCCHHH
Confidence 5666677899999999999999865
No 3
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=29.94 E-value=35 Score=28.02 Aligned_cols=26 Identities=19% Similarity=0.636 Sum_probs=22.6
Q ss_pred eEEEEEEE--ecceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEF--QQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF--~kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.+ +.|+++++.|+..||..+
T Consensus 39 ~i~l~lkvd~~~g~I~d~~F~~~GCais 66 (157)
T 2z7e_A 39 AMLFTIKVNPENDVIEDVRFKTFGCGSA 66 (157)
T ss_dssp EEEEEEEECTTTCBEEEEEEEEESCTTH
T ss_pred EEEEEEEEecCCCeEEEEEEEecCCHHH
Confidence 46778888 689999999999999966
No 4
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=27.42 E-value=45 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.579 Sum_probs=22.1
Q ss_pred eEEEEEEEecceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++.|+++++.|+..||..+
T Consensus 43 ~i~l~lkv~~g~I~d~~F~~~GCais 68 (159)
T 1su0_B 43 VISLTVKFDEDKIEDIAFAGNGCTIS 68 (159)
T ss_dssp EEEEEEEESSSSEEEEEEEEECCHHH
T ss_pred EEEEEEEECCCEEEEEEEEecCCHHH
Confidence 35677777899999999999999866
No 5
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=24.74 E-value=59 Score=25.54 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=21.7
Q ss_pred eEEEEEEEe-cceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQ-QGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~-kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++ +|+++++.|+..||..+
T Consensus 41 ~i~l~l~v~~~~~I~d~~f~~~GCais 67 (129)
T 3lvl_A 41 VMKLQIKVNDEGIIEDARFKTYGCGSA 67 (129)
T ss_dssp EEEEEEEECSSSCEEEEEEEEESCHHH
T ss_pred EEEEEEEECCCCeEEEEEEEecCCHHH
Confidence 366777788 49999999999999865
No 6
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=23.15 E-value=64 Score=26.48 Aligned_cols=26 Identities=15% Similarity=0.616 Sum_probs=22.0
Q ss_pred eEEEEEEEecceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++.|+++++.|+..||..+
T Consensus 36 ~i~l~lkv~d~~I~D~~F~g~GCais 61 (153)
T 4eb5_C 36 LMTIYIKVKDNRIEDIKFQTFGCAAA 61 (153)
T ss_dssp EEEEEEEESSSBEEEEEEEEESCHHH
T ss_pred EEEEEEEecCCeEEEEEEEEeCcHHH
Confidence 35667777999999999999999865
No 7
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=22.47 E-value=44 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEEEEEEecceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQQGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++.|+++++.|+..||..+
T Consensus 44 ~i~l~lkv~~~~I~d~~f~~~GCais 69 (147)
T 1xjs_A 44 RIRLTMKLDGDIVEDAKFEGEGCSIS 69 (147)
T ss_dssp EEEEEEECCSSBCCEEEEEEESSHHH
T ss_pred EEEEEEEECCCeEEEEEEEecCCHHH
Confidence 35677777899999999999999865
No 8
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=19.37 E-value=1.3e+02 Score=22.48 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=17.9
Q ss_pred eEEEEEEEecceEEEE--EEecCC
Q 040802 143 NLTLVLEFQQGTLENL--YWKSLG 164 (245)
Q Consensus 143 sfTLVleF~kG~LqnL--~Wk~~g 164 (245)
.+..+++++.|++..+ ||+++|
T Consensus 108 ~~~~~f~v~dGkI~~~r~Y~d~~~ 131 (134)
T 3dmc_A 108 RVAVSFDVRGDKICSYREYFGSDG 131 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCS
T ss_pred cEEEEEEEECCEEEEEEEEECCCC
Confidence 5678899999999876 687766
No 9
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=19.08 E-value=24 Score=29.49 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=0.0
Q ss_pred cchhhhhhhHHHHHHH
Q 040802 6 SHMMRRRMIMVTVHMM 21 (245)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (245)
++||+|+++.++..++
T Consensus 2 ~~M~kk~~~~~~~~~~ 17 (279)
T 4gd5_A 2 NAMFKKRLIAIIGTIF 17 (279)
T ss_dssp ----------------
T ss_pred CccHHHHHHHHHHHHH
Confidence 5799999877655544
No 10
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=14.67 E-value=49 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=16.9
Q ss_pred ccccceeecccEEEecCcceE
Q 040802 121 AGRKYAARSAPTLVADSTHTV 141 (245)
Q Consensus 121 ag~k~aarS~P~~van~t~~V 141 (245)
.++++.++++|.||.|+.+.|
T Consensus 142 ~a~~~gv~gTPtfiINGky~v 162 (184)
T 4dvc_A 142 QFQDSGLTGVPAVVVNNRYLV 162 (184)
T ss_dssp HHHHHTCCSSSEEEETTTEEE
T ss_pred HHHHcCCCcCCEEEECCEEee
Confidence 356778899999999987755
Done!