Query 040802
Match_columns 245
No_of_seqs 47 out of 49
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 19:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q3za1 b.1.18.9 (A:15-145) Tr 44.2 17 0.0013 27.0 5.2 19 45-63 17-35 (131)
2 d1r9pa_ d.224.1.2 (A:) NifU-li 27.0 23 0.0017 26.1 3.3 26 143-168 40-66 (134)
3 d1su0b_ d.224.1.2 (B:) IscU ho 26.2 15 0.0011 27.0 2.0 27 143-169 38-64 (136)
4 d1wfza_ d.224.1.2 (A:) Iron-su 25.9 18 0.0013 27.1 2.5 26 143-168 36-62 (130)
5 d1vjja1 b.1.18.9 (A:1-140) Tra 22.3 68 0.005 23.9 5.3 19 44-63 28-46 (140)
6 d1ex0a1 b.1.18.9 (A:7-190) Tra 21.5 47 0.0035 26.1 4.4 19 44-63 67-85 (184)
7 d1xjsa_ d.224.1.2 (A:) NifU {B 15.6 22 0.0016 26.3 1.0 27 143-169 44-70 (147)
8 d1bu8a1 b.12.1.2 (A:337-449) P 11.9 1.6E+02 0.012 20.1 4.9 45 116-162 20-68 (114)
9 d1xfea2 g.12.1.1 (A:1-44) Liga 11.1 81 0.0059 19.2 2.6 30 165-198 3-33 (44)
10 d3dmca1 d.17.4.10 (A:1-133) Un 10.2 2.4E+02 0.018 18.8 6.0 23 142-164 106-130 (133)
No 1
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=44.22 E-value=17 Score=27.04 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCeeecCceEEEEEecccc
Q 040802 45 SKVKRWDGFTFGLAFSTKE 63 (245)
Q Consensus 45 ~~v~rgDgft~Glaf~~~~ 63 (245)
-=|.||..|+|.|.|..+.
T Consensus 17 LIVRRGQ~F~i~l~f~~r~ 35 (131)
T d2q3za1 17 LVVRRGQPFWLTLHFEGRN 35 (131)
T ss_dssp CEEETTSCEEEEEEESSSC
T ss_pred eEEECCCcEEEEEEecCcC
Confidence 4589999999999997554
No 2
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=27.04 E-value=23 Score=26.06 Aligned_cols=26 Identities=27% Similarity=0.635 Sum_probs=20.7
Q ss_pred eEEEEEEEec-ceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQQ-GTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~k-G~LqnL~Wk~~gC~~C 168 (245)
.+++-+.+++ |.++++.|+..||..|
T Consensus 40 ~v~i~l~i~~~~~I~di~f~~~GCais 66 (134)
T d1r9pa_ 40 VMQLQIKVDDNGIIEDAKFKTYGCGSA 66 (134)
T ss_dssp EEEEEEEECSSSBEEEEEEEEESSSSH
T ss_pred EEEEEEEEcCCceEEEEEEEeccCccc
Confidence 3556666754 7899999999999977
No 3
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=26.21 E-value=15 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=23.1
Q ss_pred eEEEEEEEecceEEEEEEecCCcCCCC
Q 040802 143 NLTLVLEFQQGTLENLYWKSLGCDSCS 169 (245)
Q Consensus 143 sfTLVleF~kG~LqnL~Wk~~gC~~C~ 169 (245)
..++=++++++++.++.|+..||.-|-
T Consensus 38 ~i~i~l~i~~~~I~di~f~~~GCai~~ 64 (136)
T d1su0b_ 38 VISLTVKFDEDKIEDIAFAGNGCTIST 64 (136)
T ss_dssp EEEEEEEESSSSEEEEEEEEECCHHHH
T ss_pred EEEEEEEEcCCeeeEEEEEeccCHHHH
Confidence 356778889999999999999998773
No 4
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=25.92 E-value=18 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=20.9
Q ss_pred eEEEEEEEe-cceEEEEEEecCCcCCC
Q 040802 143 NLTLVLEFQ-QGTLENLYWKSLGCDSC 168 (245)
Q Consensus 143 sfTLVleF~-kG~LqnL~Wk~~gC~~C 168 (245)
.++|-+.++ +|+++++.|...||..|
T Consensus 36 ~i~i~l~v~~~~~I~di~F~~~GC~is 62 (130)
T d1wfza_ 36 VMKLQIQVDEKGKIVDARFKTFGCGSA 62 (130)
T ss_dssp EEEEEEEECSSSBEEEEEEECCSCHHH
T ss_pred EEEEEEEecCCCeEEEEEEEeeCCchh
Confidence 455666774 68999999999999866
No 5
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=22.26 E-value=68 Score=23.90 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.4
Q ss_pred CCCeeecCceEEEEEecccc
Q 040802 44 DSKVKRWDGFTFGLAFSTKE 63 (245)
Q Consensus 44 d~~v~rgDgft~Glaf~~~~ 63 (245)
.-=|.||..|+|.|-|. ++
T Consensus 28 ~LIVRRGQ~F~i~l~f~-R~ 46 (140)
T d1vjja1 28 ELILRRGQNFQVLMIMN-KG 46 (140)
T ss_dssp SCEEETTSCEEEEEEES-SC
T ss_pred CEEEeCCCcEEEEEEeC-CC
Confidence 34689999999999884 44
No 6
>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=21.48 E-value=47 Score=26.10 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCCeeecCceEEEEEecccc
Q 040802 44 DSKVKRWDGFTFGLAFSTKE 63 (245)
Q Consensus 44 d~~v~rgDgft~Glaf~~~~ 63 (245)
.-=|.||..|+|.|-|. ++
T Consensus 67 ~LIVRRGQpF~i~L~fn-R~ 85 (184)
T d1ex0a1 67 KLIVRRGQSFYVQIDFS-RP 85 (184)
T ss_dssp SEEEETTSEEEEEEEES-SC
T ss_pred CEEEeCCCCEEEEEEec-CC
Confidence 34699999999999984 54
No 7
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=15.58 E-value=22 Score=26.32 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=22.8
Q ss_pred eEEEEEEEecceEEEEEEecCCcCCCC
Q 040802 143 NLTLVLEFQQGTLENLYWKSLGCDSCS 169 (245)
Q Consensus 143 sfTLVleF~kG~LqnL~Wk~~gC~~C~ 169 (245)
..++=+.+++++++++.|+..||..|-
T Consensus 44 ~i~i~l~i~~~~I~d~~f~~~GCai~~ 70 (147)
T d1xjsa_ 44 RIRLTMKLDGDIVEDAKFEGEGCSISM 70 (147)
T ss_dssp EEEEEEECCSSBCCEEEEEEESSHHHH
T ss_pred EEEEEEEEcCCceEEEEeeecccHHHH
Confidence 356777789999999999999998773
No 8
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.86 E-value=1.6e+02 Score=20.09 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.3
Q ss_pred eEEEeccccceeecccEEEec---CcceEEeEEEEEEEecceEEEE-EEec
Q 040802 116 YVVAFAGRKYAARSAPTLVAD---STHTVTNLTLVLEFQQGTLENL-YWKS 162 (245)
Q Consensus 116 ~mVAfag~k~aarS~P~~van---~t~~VtsfTLVleF~kG~LqnL-~Wk~ 162 (245)
.-|.+-|.+. .|.|+.+.. ..|.+-.|.|-.+.+-|.|+.+ +|+|
T Consensus 20 V~i~L~G~~G--~s~~~~l~~~~f~rG~~~~f~~~~~~~lG~l~~i~i~hd 68 (114)
T d1bu8a1 20 ILVALYGNNG--NSKQYEIFKGSLKPEARHVRDIDVDINVGEIQKVKFLWN 68 (114)
T ss_dssp EEEEEEETTE--ECCCEEEEEEEECTTCEEEEEEEESSCCCSEEEEEEEEE
T ss_pred EEEEEEeCCC--CcccCccchhhccCCCceEEEEecCcCCCCcEEEEEEEC
Confidence 3477778774 477777644 5578889999999999999998 6666
No 9
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.13 E-value=81 Score=19.24 Aligned_cols=30 Identities=23% Similarity=0.569 Sum_probs=20.9
Q ss_pred cCCCCCCC-eeeeCCceeeecCCccccCCCccccc
Q 040802 165 CDSCSGET-SVCINNTVCAVPNLKCRNHGGPIDCN 198 (245)
Q Consensus 165 C~~C~g~s-~~Cl~~~~CA~~~s~C~~~Gg~~dCs 198 (245)
+..|.+.. |.|.++ .|-.....|.+ ..||.
T Consensus 3 ~~~C~~~~~f~C~~g-~CI~~~~~CDg---~~DC~ 33 (44)
T d1xfea2 3 VTLCEGPNKFKCHSG-ECITLDKVCNM---ARDCR 33 (44)
T ss_dssp CSSCCSTTEEECTTS-CEEESTTTTCS---SCCCS
T ss_pred cCcCCCCCeEECCCC-CeEchhhcCCC---CCCCC
Confidence 45677644 999866 59888888853 35663
No 10
>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}
Probab=10.18 E-value=2.4e+02 Score=18.83 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=17.8
Q ss_pred EeEEEEEEEecceEEEE--EEecCC
Q 040802 142 TNLTLVLEFQQGTLENL--YWKSLG 164 (245)
Q Consensus 142 tsfTLVleF~kG~LqnL--~Wk~~g 164 (245)
.-+..|++|+.|.+..+ ||+.+|
T Consensus 106 ~~~~~vf~v~dGkI~~~reY~ds~~ 130 (133)
T d3dmca1 106 NRVAVSFDVRGDKICSYREYFGSDG 130 (133)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSCS
T ss_pred ccEEEEEEEECCEEEEEEEEECCCC
Confidence 44678999999999876 566654
Done!