BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040804
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y+VLGV P+AT +E+K+AYRKLALKYHPD N PN EKF +I AY
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKN-------------PNEGEKFKQISQAYEV 55
Query: 146 LLNSESRRKYDSGN 159
L +++ R YD G
Sbjct: 56 LSDAKKRELYDKGG 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 19/87 (21%)
Query: 85 PYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYN 144
PY VLGV+ +A+ +IK+AY+KLA ++HPD NK+ P AE++F++I AY
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-----------PGAEDRFIQISKAYE 67
Query: 145 TLLNSESRRKYDSGNRTSDFSYSTGPS 171
L N E R YD Y +GPS
Sbjct: 68 ILSNEEKRTNYD--------HYGSGPS 86
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 13/73 (17%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y+VLGV P A+ +E+K+AYRK+ALK+HPD N P+ E+F +I AY
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKN-------------PDGAEQFKQISQAYEV 57
Query: 146 LLNSESRRKYDSG 158
L + + R+ YD G
Sbjct: 58 LSDEKKRQIYDQG 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 11/72 (15%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y++LGV SA+ +IK+A+ KLA+KYHPD NK P+AE KF I AY T
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-----------SPDAEAKFREIAEAYET 58
Query: 146 LLNSESRRKYDS 157
L ++ R++YD+
Sbjct: 59 LSDANRRKEYDT 70
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y+ LG+A A+ +EIKRAYR+ AL+YHPD NKE P AEEKF I AY+
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-----------PGAEEKFKEIAEAYDV 54
Query: 146 LLNSESRRKYD 156
L + R +D
Sbjct: 55 LSDPRKREIFD 65
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHA 142
ES Y VLG+ +AT+D+IK++YRKLALKYHPD N + P A +KF I +A
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD----------NPEAADKFKEINNA 66
Query: 143 YNTLLNSESRRKYD 156
+ L ++ R YD
Sbjct: 67 HAILTDATKRNIYD 80
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 18/86 (20%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y++LGV +A+ EIK+AY +LA KYHPD NK+ P A+EKF ++ AY
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD----------DPKAKEKFSQLAEAYEV 59
Query: 146 LLNSESRRKYDSGNRTSDFSYSTGPS 171
L + R++YD +Y +GPS
Sbjct: 60 LSDEVKRKQYD--------AYGSGPS 77
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 19/88 (21%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
YE+LGV+ A+ +++K+AYR+LALK+HPD N P A E F I AY
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNH-----------APGATEAFKAIGTAYAV 58
Query: 146 LLNSESRRKYDSGNRTSDFSYSTGPSQN 173
L N E R++YD + +GPS
Sbjct: 59 LSNPEKRKQYD--------QFGSGPSSG 78
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKH 141
++ YE+LGV+ +A EI++AY++LA+KYHPD N+ AE KF IK
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG----------DKEAEAKFKEIKE 51
Query: 142 AYNTLLNSESRRKYD 156
AY L +S+ R YD
Sbjct: 52 AYEVLTDSQKRAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKH 141
++ YE+LGV+ +A EI++AY++LA+KYHPD N+ AE KF IK
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG----------DKEAEAKFKEIKE 51
Query: 142 AYNTLLNSESRRKYD 156
AY L +S+ R YD
Sbjct: 52 AYEVLTDSQKRAAYD 66
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
YE+L V SA+AD+IK+AYR+ AL++HPD N + AE+KF + AY
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEF---------AEKKFKEVAEAYEV 55
Query: 146 LLNSESRRKYDSGNRTSDFSYSTGPSQ 172
L + R YD R TGPS+
Sbjct: 56 LSDKHKREIYDRYGREGLTGTGTGPSR 82
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y +LGV+ +A++ EI++A++KLALK HPD N PNA F++I AY
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPN----------NPNAHGDFLKINRAYEV 73
Query: 146 LLNSESRRKYD 156
L + + R+KYD
Sbjct: 74 LKDEDLRKKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y +LGV+ +A++ EI++A++KLALK HPD N PNA F++I AY
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPN----------NPNAHGDFLKINRAYEV 54
Query: 146 LLNSESRRKYD 156
L + + R+KYD
Sbjct: 55 LKDEDLRKKYD 65
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y +LG PSA ++K+ Y+KL L YHPD K+ T V G +KF+ I A+
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPD--KQSTDVPA--GTVEECVQKFIEIDQAWKI 68
Query: 146 LLNSESRRKYDSGNRTSDFSYSTGP----------SQNAQDEEFY 180
L N E++R+YD R D + GP S N D FY
Sbjct: 69 LGNEETKREYDL-QRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFY 112
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
YEVLGV SA+ ++IK+AYRKLAL++HPD N + + AE+KF + AY
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPD---------NKEEAEKKFKLVSEAYEV 62
Query: 146 LLNSESRRKYD 156
L +S+ R YD
Sbjct: 63 LSDSKKRSLYD 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 17/86 (19%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
YEVL V A+++ IK+AYRKLALK+HPD N E + AE +F ++ AY
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE---------NKEEAERRFKQVAEAYEV 62
Query: 146 LLNSESRRKYDSGNRTSDFSYSTGPS 171
L +++ R YD Y +GPS
Sbjct: 63 LSDAKKRDIYD--------RYGSGPS 80
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKH 141
++ YE+LGV+ +A EI++AY++LA+KYHPD N+ AE KF IK
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG----------DKEAEAKFKEIKE 51
Query: 142 AYNTLLNSESRRKYD 156
AY L +S+ R YD
Sbjct: 52 AYEVLTDSQKRAAYD 66
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y +LGV P+ IK AYR+LA KYHPDV+KE +AE KF + A+
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-----------NDAEAKFKDLAEAWEV 79
Query: 146 LLNSESRRKYD 156
L + + R +YD
Sbjct: 80 LKDEQRRAEYD 90
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 76 LLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEK 135
LL+ S++ Y++LGV +A EI +AYRKLAL++HPD FQ + AE+K
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-------NFQNEEEKKKAEKK 427
Query: 136 FMRIKHAYNTLLNSESRRKYDSG 158
F+ I A L + E R+K+D G
Sbjct: 428 FIDIAAAKEVLSDPEXRKKFDDG 450
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
Y ++GV P+ IK AYR+LA KYHPDV+KE P+AE +F + A+
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-----------PDAEARFKEVAEAWEV 56
Query: 146 LLNSESRRKYD 156
L + + R +YD
Sbjct: 57 LSDEQRRAEYD 67
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 76 LLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEK 135
LL+ S++ Y++LGV +A EI +AYRKLAL++HPD FQ + AE+K
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-------NFQNEEEKKKAEKK 427
Query: 136 FMRIKHAYNTLLNSESRRKYDSG 158
F+ I A L + E R+K+D G
Sbjct: 428 FIDIAAAKEVLSDPEMRKKFDDG 450
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 86 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAE-EKFMRIKHAYN 144
Y++LGV+PSA E+K+ YRK ALKYHPD +P + EKF I A+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPD--------------KPTGDTEKFKEISEAFE 56
Query: 145 TLLNSESRRKYD 156
L + + R YD
Sbjct: 57 ILNDPQKREIYD 68
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 77 LRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKF 136
L + ++ Y +LG PSA ++K+ Y+KL L YHPD G +KF
Sbjct: 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPA----GTMEECMQKF 65
Query: 137 MRIKHAYNTLLNSESRRKYD 156
+ I A+ L N E+++KYD
Sbjct: 66 IEIDQAWKILGNEETKKKYD 85
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKH 141
R + Y++LGV +AT +IK AY + YHPD N A E+F RI
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG----------SAEAAERFTRISQ 65
Query: 142 AYNTLLNSESRRKYDSG 158
AY L ++ RRKYD G
Sbjct: 66 AYVVLGSATLRRKYDRG 82
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 78 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFM 137
R + +++LGV P A+ DE+ +AYRKLA+ HPD + P +E+ F
Sbjct: 22 RIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK-----------CVAPGSEDAFK 70
Query: 138 RIKHAYNTLLNS 149
+ +A LL +
Sbjct: 71 AVVNARTALLKN 82
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 78 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFM 137
R+ E Y +LG ++ ++I ++ AL+ HPD + E P A E F
Sbjct: 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE----------NPKAVETFQ 64
Query: 138 RIKHAYNTLLNSESRRKYDSGNRT 161
+++ A L N ESR +YD R+
Sbjct: 65 KLQKAKEILTNEESRARYDHWRRS 88
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 25/108 (23%)
Query: 83 ESPYEVLGVAPSA-TADEIKRAYRKLALKYHPD--VNKEITSVFQIFGIQPNAEEKFMRI 139
E+ Y+VL V ++ +AYR LA K+HPD NKE + AEE+F I
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLL---------AEERFRVI 65
Query: 140 KHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLR 187
AY TL + E++ YD Y P D+ FY + + R
Sbjct: 66 ATAYETLKDDEAKTNYD--------YYLDHP-----DQRFYNYYQYYR 100
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 71 SNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPD 114
S T+L A E+ ++ +G+A T +++K+ YRK L HPD
Sbjct: 39 STMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 80
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 71 SNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPD 114
S T+L A E+ ++ +G+A T +++K+ YRK L HPD
Sbjct: 107 STMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 148
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 71 SNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPD 114
S T+L A E+ ++ +G A T +++K+ YRK L HPD
Sbjct: 26 STXHTVLWAG--ETKWKPVGXADLVTPEQVKKVYRKAVLVVHPD 67
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 71 SNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHP 113
S T+L A E+ ++ +G+A T +++K+ YRK L HP
Sbjct: 24 STMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHP 64
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 71 SNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHP 113
S T+L A E+ ++ +G+A T +++K+ YRK L HP
Sbjct: 23 STMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHP 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,290,366
Number of Sequences: 62578
Number of extensions: 314871
Number of successful extensions: 497
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 35
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)