Query 040804
Match_columns 300
No_of_seqs 385 out of 2223
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.2E-31 2.6E-36 254.9 6.0 155 81-258 2-156 (371)
2 PRK14296 chaperone protein Dna 99.9 2.6E-25 5.7E-30 214.6 5.7 157 82-255 3-160 (372)
3 KOG0712 Molecular chaperone (D 99.9 5.3E-25 1.2E-29 207.0 6.3 147 82-266 3-149 (337)
4 PRK14288 chaperone protein Dna 99.9 6.7E-25 1.4E-29 211.6 7.0 149 82-254 2-150 (369)
5 PRK14286 chaperone protein Dna 99.9 1.2E-24 2.6E-29 210.0 4.6 156 82-255 3-161 (372)
6 PRK14282 chaperone protein Dna 99.9 2.6E-24 5.6E-29 207.5 4.3 160 82-255 3-163 (369)
7 PRK14279 chaperone protein Dna 99.9 5.3E-24 1.1E-28 206.8 5.1 163 82-255 8-184 (392)
8 PRK14276 chaperone protein Dna 99.9 4.7E-24 1E-28 206.4 4.7 154 82-254 3-156 (380)
9 PRK14297 chaperone protein Dna 99.9 5.1E-24 1.1E-28 206.2 4.4 156 82-255 3-159 (380)
10 PRK14285 chaperone protein Dna 99.9 4E-24 8.7E-29 205.9 3.7 154 83-255 3-157 (365)
11 PRK14287 chaperone protein Dna 99.9 4.7E-24 1E-28 205.8 4.1 147 82-255 3-149 (371)
12 PRK14301 chaperone protein Dna 99.9 9.6E-24 2.1E-28 203.8 5.6 152 82-255 3-155 (373)
13 PTZ00037 DnaJ_C chaperone prot 99.9 1E-23 2.2E-28 206.1 5.2 135 82-255 27-161 (421)
14 PRK14277 chaperone protein Dna 99.9 1.2E-23 2.6E-28 204.0 5.6 161 82-255 4-166 (386)
15 PRK14298 chaperone protein Dna 99.9 7.9E-24 1.7E-28 204.7 3.8 148 82-255 4-152 (377)
16 PRK14294 chaperone protein Dna 99.9 8.9E-24 1.9E-28 203.6 4.1 151 82-255 3-155 (366)
17 PRK14291 chaperone protein Dna 99.9 1.2E-23 2.6E-28 203.8 4.6 154 82-255 2-167 (382)
18 KOG0713 Molecular chaperone (D 99.9 3.4E-23 7.4E-28 193.1 7.1 72 81-162 14-85 (336)
19 PRK14280 chaperone protein Dna 99.9 1.4E-23 3.1E-28 202.9 4.4 151 82-254 3-153 (376)
20 PRK14283 chaperone protein Dna 99.9 2.4E-23 5.2E-28 201.4 5.3 152 82-254 4-156 (378)
21 PRK10767 chaperone protein Dna 99.9 2.9E-23 6.4E-28 200.3 5.5 150 82-254 3-152 (371)
22 PRK14284 chaperone protein Dna 99.9 1.4E-23 3E-28 203.9 3.3 163 83-255 1-169 (391)
23 PRK14278 chaperone protein Dna 99.9 1.5E-23 3.3E-28 202.8 3.2 145 83-254 3-149 (378)
24 PRK14295 chaperone protein Dna 99.9 3.2E-23 6.9E-28 201.2 4.5 158 82-255 8-177 (389)
25 TIGR02349 DnaJ_bact chaperone 99.9 5.3E-23 1.2E-27 197.4 4.9 153 84-255 1-154 (354)
26 PRK14281 chaperone protein Dna 99.9 8.9E-23 1.9E-27 198.6 4.6 152 83-255 3-174 (397)
27 PRK14290 chaperone protein Dna 99.9 1.9E-22 4.1E-27 194.4 4.9 152 83-255 3-160 (365)
28 PRK14300 chaperone protein Dna 99.9 2.7E-22 5.9E-27 193.7 5.3 151 83-255 3-156 (372)
29 PRK14292 chaperone protein Dna 99.8 6.4E-22 1.4E-26 191.1 3.6 147 83-255 2-150 (371)
30 PRK14289 chaperone protein Dna 99.8 1E-21 2.2E-26 190.6 5.0 150 82-255 4-165 (386)
31 PRK14293 chaperone protein Dna 99.8 9.8E-22 2.1E-26 190.0 4.5 147 83-255 3-154 (374)
32 PRK14299 chaperone protein Dna 99.8 1.1E-20 2.3E-25 177.1 4.7 145 82-242 3-154 (291)
33 KOG0717 Molecular chaperone (D 99.8 1.5E-19 3.3E-24 173.7 8.5 148 81-238 6-165 (508)
34 KOG0715 Molecular chaperone (D 99.8 2.2E-19 4.7E-24 167.8 6.4 68 83-161 43-110 (288)
35 PRK10266 curved DNA-binding pr 99.8 1.4E-19 3E-24 170.6 2.5 140 82-245 3-145 (306)
36 PF00226 DnaJ: DnaJ domain; I 99.8 1E-18 2.2E-23 127.3 6.2 64 84-156 1-64 (64)
37 KOG0716 Molecular chaperone (D 99.7 3E-18 6.6E-23 155.6 5.7 69 82-160 30-98 (279)
38 KOG0719 Molecular chaperone (D 99.7 1.3E-17 2.8E-22 148.5 9.4 72 82-161 13-84 (264)
39 KOG0691 Molecular chaperone (D 99.7 3E-17 6.5E-22 153.0 5.9 70 82-161 4-73 (296)
40 KOG0718 Molecular chaperone (D 99.7 2.5E-17 5.4E-22 158.7 4.9 73 82-161 8-80 (546)
41 PTZ00341 Ring-infected erythro 99.7 1E-16 2.2E-21 166.0 7.4 70 81-161 571-640 (1136)
42 smart00271 DnaJ DnaJ molecular 99.7 1.4E-16 3.1E-21 114.2 6.0 59 83-150 1-59 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.6 5.3E-16 1.2E-20 109.2 6.2 55 84-148 1-55 (55)
44 PHA03102 Small T antigen; Revi 99.6 2.5E-15 5.4E-20 127.9 6.8 65 83-161 5-71 (153)
45 TIGR03835 termin_org_DnaJ term 99.6 3.6E-15 7.9E-20 151.6 7.2 68 83-161 2-69 (871)
46 COG2214 CbpA DnaJ-class molecu 99.6 5.3E-15 1.1E-19 129.4 6.6 67 82-158 5-72 (237)
47 KOG0721 Molecular chaperone (D 99.5 7.8E-15 1.7E-19 129.6 6.8 74 78-161 94-167 (230)
48 KOG0624 dsRNA-activated protei 99.5 9.2E-15 2E-19 137.4 6.8 76 78-160 389-464 (504)
49 COG5269 ZUO1 Ribosome-associat 99.5 4.5E-14 9.8E-19 128.3 9.7 128 82-235 42-174 (379)
50 PRK05014 hscB co-chaperone Hsc 99.5 2.2E-14 4.8E-19 124.7 7.1 74 83-161 1-76 (171)
51 PRK01356 hscB co-chaperone Hsc 99.5 4.1E-14 8.9E-19 122.4 6.1 72 83-161 2-75 (166)
52 PRK00294 hscB co-chaperone Hsc 99.5 7.3E-14 1.6E-18 121.5 7.3 76 81-161 2-79 (173)
53 PRK03578 hscB co-chaperone Hsc 99.5 1.1E-13 2.3E-18 120.9 7.1 75 82-161 5-81 (176)
54 KOG0720 Molecular chaperone (D 99.4 9.6E-14 2.1E-18 134.0 5.3 69 80-159 232-300 (490)
55 PTZ00100 DnaJ chaperone protei 99.4 4.2E-13 9.1E-18 109.0 5.5 58 76-147 58-115 (116)
56 PRK09430 djlA Dna-J like membr 99.4 4.2E-13 9.2E-18 124.4 5.8 67 80-149 197-263 (267)
57 KOG0722 Molecular chaperone (D 99.4 2E-13 4.3E-18 123.3 3.1 68 82-160 32-99 (329)
58 KOG0550 Molecular chaperone (D 99.3 4.7E-13 1E-17 128.2 4.1 73 78-159 368-440 (486)
59 KOG0714 Molecular chaperone (D 99.3 1.4E-12 3E-17 119.4 4.7 70 82-160 2-71 (306)
60 PHA02624 large T antigen; Prov 99.2 1.3E-11 2.8E-16 124.5 6.2 60 82-155 10-71 (647)
61 PRK01773 hscB co-chaperone Hsc 99.2 4.1E-11 8.9E-16 104.3 7.0 73 83-160 2-76 (173)
62 COG5407 SEC63 Preprotein trans 99.1 1.1E-10 2.3E-15 112.9 4.8 78 80-162 95-172 (610)
63 TIGR00714 hscB Fe-S protein as 99.0 2.8E-10 6.1E-15 97.7 6.1 62 95-161 3-64 (157)
64 KOG1150 Predicted molecular ch 98.9 2.8E-09 6E-14 93.5 4.9 66 82-156 52-117 (250)
65 KOG0568 Molecular chaperone (D 98.4 2.5E-07 5.3E-12 83.1 5.5 57 82-149 46-103 (342)
66 KOG1789 Endocytosis protein RM 98.3 6.6E-07 1.4E-11 94.1 5.3 58 78-148 1276-1337(2235)
67 KOG0723 Molecular chaperone (D 98.1 3.7E-06 8.1E-11 66.9 4.9 60 76-149 49-108 (112)
68 COG1076 DjlA DnaJ-domain-conta 97.3 0.00012 2.6E-09 63.8 2.6 61 83-146 113-173 (174)
69 KOG3192 Mitochondrial J-type c 97.3 0.00034 7.4E-09 59.5 4.7 75 82-161 7-83 (168)
70 COG1076 DjlA DnaJ-domain-conta 96.4 0.0023 5.1E-08 55.7 3.1 71 85-160 3-75 (174)
71 KOG0431 Auxilin-like protein a 96.3 0.0036 7.8E-08 62.4 4.1 53 91-146 396-448 (453)
72 PF03656 Pam16: Pam16; InterP 95.1 0.056 1.2E-06 44.9 5.8 60 80-153 55-114 (127)
73 KOG0724 Zuotin and related mol 85.6 0.8 1.7E-05 43.6 3.5 60 94-159 3-62 (335)
74 PF13446 RPT: A repeated domai 85.3 1.6 3.5E-05 31.1 4.2 27 83-109 5-31 (62)
75 PF11833 DUF3353: Protein of u 83.2 3.2 7E-05 36.9 6.0 40 92-149 1-41 (194)
76 PF14687 DUF4460: Domain of un 67.2 8.9 0.00019 31.1 4.1 51 94-150 5-55 (112)
77 COG5552 Uncharacterized conser 50.7 53 0.0012 24.8 5.3 34 83-116 3-36 (88)
78 PF13740 ACT_6: ACT domain; PD 39.9 29 0.00062 25.5 2.6 20 281-300 52-71 (76)
79 TIGR00012 L29 ribosomal protei 38.1 30 0.00065 24.2 2.3 16 283-298 6-21 (55)
80 COG0255 RpmC Ribosomal protein 37.1 31 0.00068 25.6 2.4 17 282-298 11-27 (69)
81 PF10041 DUF2277: Uncharacteri 35.5 1.6E+02 0.0035 22.3 5.9 34 85-118 5-38 (78)
82 PF07709 SRR: Seven Residue Re 35.1 22 0.00048 17.9 0.9 13 135-147 2-14 (14)
83 PF00831 Ribosomal_L29: Riboso 35.0 37 0.00081 24.0 2.4 16 283-298 8-23 (58)
84 cd04870 ACT_PSP_1 CT domains f 31.1 46 0.001 24.2 2.5 18 283-300 52-69 (75)
85 KOG3442 Uncharacterized conser 30.5 1.7E+02 0.0037 24.3 5.8 36 82-117 58-93 (132)
86 PF11637 UvsW: ATP-dependant D 29.2 35 0.00075 24.0 1.4 21 280-300 6-26 (54)
87 PF04799 Fzo_mitofusin: fzo-li 29.1 37 0.00079 29.7 1.8 32 225-256 74-105 (171)
88 TIGR01834 PHA_synth_III_E poly 29.1 63 0.0014 31.1 3.6 22 278-299 292-313 (320)
89 PRK00306 50S ribosomal protein 28.2 53 0.0011 23.8 2.3 16 283-298 10-25 (66)
90 PHA02609 uvsW.1 hypothetical p 28.2 57 0.0012 24.4 2.4 23 278-300 23-45 (76)
91 PRK14549 50S ribosomal protein 27.6 55 0.0012 24.1 2.3 16 283-298 13-28 (69)
92 cd00427 Ribosomal_L29_HIP Ribo 26.5 61 0.0013 22.8 2.3 16 283-298 7-22 (57)
93 PF01343 Peptidase_S49: Peptid 25.8 15 0.00034 30.8 -1.0 66 220-300 88-153 (154)
94 CHL00154 rpl29 ribosomal prote 25.7 63 0.0014 23.7 2.3 16 283-298 13-28 (67)
95 cd04893 ACT_GcvR_1 ACT domains 22.9 79 0.0017 23.2 2.5 19 282-300 52-70 (77)
96 PF12434 Malate_DH: Malate deh 22.6 94 0.002 18.9 2.2 17 97-113 10-26 (28)
97 PF12107 VEK-30: Plasminogen ( 20.9 89 0.0019 16.8 1.7 10 288-297 2-11 (17)
98 COG2879 Uncharacterized small 20.7 1.6E+02 0.0034 21.6 3.4 17 102-118 26-42 (65)
99 PF10550 Toxin_36: Conantokin- 20.4 1.4E+02 0.0029 15.4 2.2 14 284-297 2-15 (15)
100 PF02370 M: M protein repeat; 20.4 1.1E+02 0.0023 17.5 2.0 14 285-298 4-17 (21)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=254.89 Aligned_cols=155 Identities=34% Similarity=0.421 Sum_probs=120.0
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..+|||+||||+++||.+|||+|||+||++||||+|+. +++|+++|++|++||+|||||++|+.||+++.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g----------~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~ 71 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG----------DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH 71 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence 36899999999999999999999999999999999994 38899999999999999999999999999996
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 161 TSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
.... ..+. ... .|.+||. .+.|+|..++..-..-+.......+..|++..+...++|.+.+.++.++
T Consensus 72 ~~~~--~gg~-gg~---g~~~fgg-------~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~ 138 (371)
T COG0484 72 AGFK--AGGF-GGF---GFGGFGG-------DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIR 138 (371)
T ss_pred cccc--cCCc-CCC---CcCCCCC-------CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEe
Confidence 5432 1110 000 2222222 5677777777410000011123446778999999999999999999999
Q ss_pred ccccCccCCCCCCccCcc
Q 040804 241 ITDPETETNEEPRQSNPF 258 (300)
Q Consensus 241 i~r~~~C~~c~g~~~~~~ 258 (300)
+.+.+.|++|+|.....-
T Consensus 139 ~~~~~~C~~C~GsGak~g 156 (371)
T COG0484 139 VTRSVTCSTCHGSGAKPG 156 (371)
T ss_pred cceeeECCcCCCCCCCCC
Confidence 999999999999866654
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.6e-25 Score=214.57 Aligned_cols=157 Identities=29% Similarity=0.424 Sum_probs=109.1
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||+||+||++|+.||+.+..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-----------~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-----------PDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------chHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 4799999999999999999999999999999999875 67899999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcc-cccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 162 SDFSYSTGPSQNAQD-EEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~-~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
. .....+....... ..+|. .+.......++++|..++.. -........+..|+..++...+|+++.|+++.+.
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~--~~~~~g~~~f~d~f~~~fgg---g~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~ 145 (372)
T PRK14296 72 A-FDGSSGFSSNFGDFEDLFS--NMGSSGFSSFTNIFSDFFGS---NKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIE 145 (372)
T ss_pred h-hcCCCCcCcCCCccccccc--cccccccccchhhhhhhcCC---CccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEE
Confidence 2 1110000000000 01110 00000011234555554421 0011112234568889999999999999999999
Q ss_pred ccccCccCCCCCCcc
Q 040804 241 ITDPETETNEEPRQS 255 (300)
Q Consensus 241 i~r~~~C~~c~g~~~ 255 (300)
+.+.+.|..|.|...
T Consensus 146 ~~~~~~C~~C~G~G~ 160 (372)
T PRK14296 146 LDLLTNCSKCFGSGA 160 (372)
T ss_pred EeeeeccCCCCCCcc
Confidence 999999999998543
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.3e-25 Score=206.99 Aligned_cols=147 Identities=33% Similarity=0.466 Sum_probs=113.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
...+|+||||+++||.+|||+|||+|+++||||||++ +.++|++|++||+|||||++|+.||+.+..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-------------~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-------------AGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-------------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 4689999999999999999999999999999999975 899999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.......++ |++. +++||. +.. .......+-.|+.+.+..++|++|.+-.+.+.+
T Consensus 70 ~~~~g~~~~----------g~~~--------f~~~F~-----~g~--~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l 124 (337)
T KOG0712|consen 70 GLQGGGGGG----------GFGG--------FSQFFG-----FGG--NGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFL 124 (337)
T ss_pred hhcccCCCC----------CCcc--------HHHhcc-----CCC--cCccccccCCCceEEEEEEHHHhhcCCccceec
Confidence 331111110 1111 233333 111 111223347789999999999999999999999
Q ss_pred cccCccCCCCCCccCccccCCCCcc
Q 040804 242 TDPETETNEEPRQSNPFSSSATENT 266 (300)
Q Consensus 242 ~r~~~C~~c~g~~~~~~~~~~~~~~ 266 (300)
.+++.|+.|+|..-....+-+++.-
T Consensus 125 ~~~~iCs~C~GsGgksg~~~~C~~C 149 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSGSAPKCTTC 149 (337)
T ss_pred ccCccCCcCCCCCCCCCCCCCCCCC
Confidence 9999999999987776666544443
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=6.7e-25 Score=211.60 Aligned_cols=149 Identities=28% Similarity=0.372 Sum_probs=107.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++||.+|||+|||+||++||||+++. ++.++++|++|++||+||+||++|+.||+.+..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~----------~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG----------DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------ccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 3699999999999999999999999999999999874 256899999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.. ... +.. .. ++.+++ ..+.++|..++.. ..-........+..|+...|...+|+++.|+++.+++
T Consensus 72 ~~-~~~-~~~----~~---~~~~~f----~~~~~~F~~~fg~-g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~ 137 (369)
T PRK14288 72 GL-NQA-GAS----QS---DFSDFF----EDLGSFFEDAFGF-GARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKV 137 (369)
T ss_pred cc-ccC-CCC----cc---ccccch----hhHHHHHHhhcCC-CCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEE
Confidence 21 110 100 00 111111 1223344433210 0000001112345688899999999999999999999
Q ss_pred cccCccCCCCCCc
Q 040804 242 TDPETETNEEPRQ 254 (300)
Q Consensus 242 ~r~~~C~~c~g~~ 254 (300)
.+.+.|..|+|..
T Consensus 138 ~r~~~C~~C~G~G 150 (369)
T PRK14288 138 QYQSVCESCDGTG 150 (369)
T ss_pred EeeccCCCCCCcc
Confidence 9999999999854
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.2e-24 Score=210.01 Aligned_cols=156 Identities=29% Similarity=0.377 Sum_probs=110.0
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. ++.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG----------NKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------chHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 4699999999999999999999999999999999874 366899999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHH-Hh--hhcccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQ-NW--EASASSQGKPKSLWEELAEVGEEFVEFLEKE 238 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~-~~--~a~~~~~~kp~d~~eel~~~~eef~~~~ek~ 238 (300)
.. ....+.. . ...|.+++. ....++|+|..|+..-. .. ........+..|+...|...+|+++.++++.
T Consensus 73 g~-~~~~~~~-~--~~~~~~~~~----~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~ 144 (372)
T PRK14286 73 GV-NAGAGGF-G--QGAYTDFSD----IFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYK 144 (372)
T ss_pred hh-ccccCCC-C--CCCcccccc----cccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEE
Confidence 21 1000000 0 000111111 01224456666543100 00 0000112345688889999999999999999
Q ss_pred hhccccCccCCCCCCcc
Q 040804 239 LNITDPETETNEEPRQS 255 (300)
Q Consensus 239 ~~i~r~~~C~~c~g~~~ 255 (300)
+.+.+.+.|..|+|...
T Consensus 145 i~~~r~~~C~~C~G~G~ 161 (372)
T PRK14286 145 IEIPRLESCVDCNGSGA 161 (372)
T ss_pred EEeeccccCCCCcCCCc
Confidence 99999999999998543
No 6
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.6e-24 Score=207.55 Aligned_cols=160 Identities=25% Similarity=0.363 Sum_probs=107.8
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++||.+|||+|||+||++||||+++. .+..++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~---------~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPE---------NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCcc---------chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 4799999999999999999999999999999999864 1245889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccch-hHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITI-EDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~-~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
.......+.. . ...| +++.+..+...+ .++|..++.....-........+..|+...+...+|+++.++++.+.
T Consensus 74 ~~~~~~~~~~-~--~g~~--~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~ 148 (369)
T PRK14282 74 GEQPPYQETE-S--GGGF--FEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVE 148 (369)
T ss_pred ccccccccCC-C--CCcc--cccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEE
Confidence 2111000000 0 0011 111111110001 13454443211000000011224567888899999999999999999
Q ss_pred ccccCccCCCCCCcc
Q 040804 241 ITDPETETNEEPRQS 255 (300)
Q Consensus 241 i~r~~~C~~c~g~~~ 255 (300)
+.+.+.|..|+|...
T Consensus 149 ~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 149 YDRYETCPHCGGTGV 163 (369)
T ss_pred eeecccCCCCCccCC
Confidence 999999999998543
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=5.3e-24 Score=206.83 Aligned_cols=163 Identities=28% Similarity=0.339 Sum_probs=108.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
.+|||+||||+++|+.+|||+|||+||++||||+++. ++.++++|++|++||+||+||++|+.||+++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG----------DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 4799999999999999999999999999999999875 357899999999999999999999999998642
Q ss_pred C---CCCCCC----CCCCCCccccc---ccCCCccc----ccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHH
Q 040804 162 S---DFSYST----GPSQNAQDEEF---YGFGNFLR----DVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEV 227 (300)
Q Consensus 162 ~---~~~~~~----~~~~~~~~~~f---~g~g~~~~----~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~ 227 (300)
. ++.... +.........+ +.+.+++. .....+.++|..++.. ..-........+..|++..|...
T Consensus 78 ~~~~g~~~~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~-~~~~~~~~~~~~g~di~~~l~lt 156 (392)
T PRK14279 78 FAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNR-GGGSARPSRPRRGNDLETETTLD 156 (392)
T ss_pred ccccccccccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcC-CCcccccCCCCCCCCeEEEEEEE
Confidence 1 111000 00000000000 00000000 0001133444444321 00000011223556888899999
Q ss_pred HHHHHHHHHHhhhccccCccCCCCCCcc
Q 040804 228 GEEFVEFLEKELNITDPETETNEEPRQS 255 (300)
Q Consensus 228 ~eef~~~~ek~~~i~r~~~C~~c~g~~~ 255 (300)
+|+++.++++.+.+.+.+.|..|+|...
T Consensus 157 Lee~~~G~~~~v~~~~~~~C~~C~G~G~ 184 (392)
T PRK14279 157 FVEAAKGVTMPLRLTSPAPCTTCHGSGA 184 (392)
T ss_pred HHHHhCCeEEEEeeeccccCCCCccccc
Confidence 9999999999999999999999998554
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=4.7e-24 Score=206.44 Aligned_cols=154 Identities=31% Similarity=0.377 Sum_probs=108.6
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++||.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-----------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-----------PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 4699999999999999999999999999999999875 66899999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.... ..+.... ....|...+. ...++++|..++..- .-........+..|+...|...+|+++.++++.+.+
T Consensus 72 ~~~~-~~~~~~~-~~~~~~~~~~-----~~~~~d~f~~~fgg~-~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~ 143 (380)
T PRK14276 72 GANG-GFGGGAG-GFGGFDGSGG-----FGGFEDIFSSFFGGG-GARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSY 143 (380)
T ss_pred cccC-CCCCCCC-CCCCcccccc-----ccchhhHHHHHhCcc-ccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEe
Confidence 2111 0000000 0000100000 012345666554310 000000112245678888999999999999999999
Q ss_pred cccCccCCCCCCc
Q 040804 242 TDPETETNEEPRQ 254 (300)
Q Consensus 242 ~r~~~C~~c~g~~ 254 (300)
.+.+.|..|+|..
T Consensus 144 ~~~~~C~~C~G~G 156 (380)
T PRK14276 144 NREATCHTCNGSG 156 (380)
T ss_pred eccccCCCCcCcc
Confidence 9999999999854
No 9
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=5.1e-24 Score=206.24 Aligned_cols=156 Identities=31% Similarity=0.414 Sum_probs=110.1
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. ++.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG----------NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 3699999999999999999999999999999999875 356899999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHH-HHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEE-FQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~-~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
. .....+... ..|.+++ ......++++|..|+.. +...+.......+..|++.+|...+|+++.++++.+.
T Consensus 73 ~-~~~~~~~~~----~~~~~~~---~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~ 144 (380)
T PRK14297 73 D-FNGAGGFGS----GGFGGFD---FSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEIS 144 (380)
T ss_pred c-ccccCCCCC----CCCCCcC---cccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEE
Confidence 2 110000000 0111110 00001245666666532 0000001111234568888999999999999999999
Q ss_pred ccccCccCCCCCCcc
Q 040804 241 ITDPETETNEEPRQS 255 (300)
Q Consensus 241 i~r~~~C~~c~g~~~ 255 (300)
+.+.+.|..|.|...
T Consensus 145 ~~r~~~C~~C~G~G~ 159 (380)
T PRK14297 145 VTRNENCETCNGTGA 159 (380)
T ss_pred eeeeccCCCcccccc
Confidence 999999999998543
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=4e-24 Score=205.91 Aligned_cols=154 Identities=29% Similarity=0.404 Sum_probs=109.9
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++||.+|||+|||+|+++||||+++. ++.+.++|++|++||+||+|+.+|+.||+++...
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG----------NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 699999999999999999999999999999999875 3568899999999999999999999999987532
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhh-cccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 163 DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEA-SASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a-~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
+....+.. .. ...|.++++ ....++++|..|+..- ... ......+..|+...|...+|+++.++++.+.+
T Consensus 73 -~~~~~~~~-~~-~~g~~~~~~----~~~~~~d~f~~~fgg~--~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~ 143 (365)
T PRK14285 73 -FEGGGGFE-GF-SGGFSGFSD----IFEDFGDIFDSFFTGN--RGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINI 143 (365)
T ss_pred -hccCCCcc-cc-CCCcccccc----ccccHHHHHHHhhcCC--cCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEe
Confidence 11100000 00 001111111 1123456666665310 001 00112345688888999999999999999999
Q ss_pred cccCccCCCCCCcc
Q 040804 242 TDPETETNEEPRQS 255 (300)
Q Consensus 242 ~r~~~C~~c~g~~~ 255 (300)
.+.+.|..|.|...
T Consensus 144 ~r~~~C~~C~G~G~ 157 (365)
T PRK14285 144 TRNMLCESCLGKKS 157 (365)
T ss_pred eecccCCCCCCccc
Confidence 99999999998543
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=4.7e-24 Score=205.84 Aligned_cols=147 Identities=34% Similarity=0.434 Sum_probs=108.2
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-----------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-----------PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4699999999999999999999999999999999865 56889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.. ....+.. .+.+++ .++|+|..|+..- .-........+..|+..++...+++++.++++.+.+
T Consensus 72 ~~-~~~~~~~------~~~~f~--------~~~d~f~~~fgg~-~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~ 135 (371)
T PRK14287 72 DP-NQGFGGG------GAGDFG--------GFSDIFDMFFGGG-GGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEI 135 (371)
T ss_pred cc-ccccCCC------CCcccc--------chHHHHHhhhccc-cCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEE
Confidence 21 1000000 000111 1345666554310 000000112245688888999999999999999999
Q ss_pred cccCccCCCCCCcc
Q 040804 242 TDPETETNEEPRQS 255 (300)
Q Consensus 242 ~r~~~C~~c~g~~~ 255 (300)
.+.+.|..|.|...
T Consensus 136 ~r~~~C~~C~G~G~ 149 (371)
T PRK14287 136 PREETCGTCHGSGA 149 (371)
T ss_pred eeeccCCCCCCccc
Confidence 99999999997543
No 12
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=9.6e-24 Score=203.82 Aligned_cols=152 Identities=32% Similarity=0.399 Sum_probs=109.4
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++||.+|||+|||+||++||||+++. +++++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD----------NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCC----------ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4799999999999999999999999999999999875 356889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhh-hcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWE-ASASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~-a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
.. ... +... .|.+.++ ....+.++|..++. +.... ...+...+..|+...|...+|+++.++++.+.
T Consensus 73 g~-~~~-~~~~-----g~~~~~~----~~~~f~d~f~~~fg-~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~ 140 (373)
T PRK14301 73 GV-NGN-GGFG-----GFSSAED----IFSHFSDIFGDLFG-FSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLR 140 (373)
T ss_pred cc-ccC-CCCC-----Ccccccc----cccchHHHHHHHhh-ccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEE
Confidence 21 100 0000 0101011 11123455555432 00000 01122235668888999999999999999999
Q ss_pred ccccCccCCCCCCcc
Q 040804 241 ITDPETETNEEPRQS 255 (300)
Q Consensus 241 i~r~~~C~~c~g~~~ 255 (300)
+.+.+.|..|+|...
T Consensus 141 ~~r~~~C~~C~G~G~ 155 (373)
T PRK14301 141 IPKNVTCDDCGGSGA 155 (373)
T ss_pred eeecccCCCCCCccc
Confidence 999999999998554
No 13
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.88 E-value=1e-23 Score=206.10 Aligned_cols=135 Identities=29% Similarity=0.380 Sum_probs=103.1
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++||.+|||+|||+||++||||++++ .++|++|++||+||+||.+|+.||+.+..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~--------------~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD--------------PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch--------------HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 4799999999999999999999999999999999743 47999999999999999999999998743
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.. . .+. +.+ .+.++|..++.. ........+..|+...|...+++++.|+++.+.+
T Consensus 93 ~~-~--~~~----------~~~--------d~~d~f~~~Fgg----g~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~ 147 (421)
T PTZ00037 93 GL-E--GGE----------QPA--------DASDLFDLIFGG----GRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAI 147 (421)
T ss_pred hc-c--cCC----------CCc--------chhhhHHHhhcc----ccccccccCCCCEEEEeeeeHHHHhCCCceEEEe
Confidence 11 1 000 001 123455544321 0011112345678888999999999999999999
Q ss_pred cccCccCCCCCCcc
Q 040804 242 TDPETETNEEPRQS 255 (300)
Q Consensus 242 ~r~~~C~~c~g~~~ 255 (300)
.+.+.|..|+|...
T Consensus 148 ~r~~~C~~C~G~G~ 161 (421)
T PTZ00037 148 NKDVICANCEGHGG 161 (421)
T ss_pred eccccccccCCCCC
Confidence 99999999997553
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.2e-23 Score=203.97 Aligned_cols=161 Identities=30% Similarity=0.363 Sum_probs=109.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. .+.++++|++|++||+||+|+.+|+.||+.+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG----------DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC----------chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 4699999999999999999999999999999999875 356889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhc--ccCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEAS--ASSQGKPKSLWEELAEVGEEFVEFLEKEL 239 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~--~~~~~kp~d~~eel~~~~eef~~~~ek~~ 239 (300)
.......+.. ......|. .+.+... ...+.++|..++..+..-... .....+..|+...|+..+|+++.|+++.+
T Consensus 74 ~~~~~~~~~~-~~~~~g~~-~~~~~~~-~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v 150 (386)
T PRK14277 74 AFDPGGFGQG-GFGQGGFG-GGGFDFD-FGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEI 150 (386)
T ss_pred cccccccccC-CcCCCCcc-ccCcccc-ccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEE
Confidence 2110000000 00000000 0000000 011334555555432100000 01122456888899999999999999999
Q ss_pred hccccCccCCCCCCcc
Q 040804 240 NITDPETETNEEPRQS 255 (300)
Q Consensus 240 ~i~r~~~C~~c~g~~~ 255 (300)
.+.+.+.|..|+|...
T Consensus 151 ~~~r~~~C~~C~G~G~ 166 (386)
T PRK14277 151 EVERFEKCDVCKGSGA 166 (386)
T ss_pred EEEeeccCCCCCCCCc
Confidence 9999999999998543
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=7.9e-24 Score=204.66 Aligned_cols=148 Identities=30% Similarity=0.423 Sum_probs=108.0
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-----------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-----------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 4699999999999999999999999999999999875 56889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhc-ccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEAS-ASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~-~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
.. ....+.. ..++.+++ ..+.++|..++.. .... .....+..|++.+|...+|+++.++++.+.
T Consensus 73 g~-~~~~~~~------~~~~~~~~-----~~~~d~f~~~Fgg---~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~ 137 (377)
T PRK14298 73 GI-DNQYSAE------DIFRGADF-----GGFGDIFEMFFGG---GGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDID 137 (377)
T ss_pred cc-ccccCcc------cccccCCc-----CcchhhhHhhhcC---CCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEE
Confidence 21 1000000 00110110 1123455555431 0000 111235568888999999999999999999
Q ss_pred ccccCccCCCCCCcc
Q 040804 241 ITDPETETNEEPRQS 255 (300)
Q Consensus 241 i~r~~~C~~c~g~~~ 255 (300)
+.+.+.|..|.|...
T Consensus 138 ~~r~~~C~~C~G~G~ 152 (377)
T PRK14298 138 VPRAERCSTCSGTGA 152 (377)
T ss_pred EEeeccCCCCCCCcc
Confidence 999999999998543
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=8.9e-24 Score=203.61 Aligned_cols=151 Identities=32% Similarity=0.420 Sum_probs=108.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. ++.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~----------~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG----------DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------chHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999874 356889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcc--cCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASA--SSQGKPKSLWEELAEVGEEFVEFLEKEL 239 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~--~~~~kp~d~~eel~~~~eef~~~~ek~~ 239 (300)
. ... +. +.+++++. .....+.|+|..++. +....... ....+..|+...+...+|+++.++++.+
T Consensus 73 g-~~~--~~--------~~~~~~~~-~~~~~~~d~f~~~fg-~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i 139 (366)
T PRK14294 73 G-LSG--TG--------FSGFSGFD-DIFSSFGDIFEDFFG-FGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEI 139 (366)
T ss_pred c-ccC--CC--------CCCcCccc-cchhhhhhhHHHhhc-cCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEE
Confidence 2 110 00 00111110 011123445555543 00000000 1123456888889999999999999999
Q ss_pred hccccCccCCCCCCcc
Q 040804 240 NITDPETETNEEPRQS 255 (300)
Q Consensus 240 ~i~r~~~C~~c~g~~~ 255 (300)
.+.+.+.|..|.|...
T Consensus 140 ~~~r~~~C~~C~G~G~ 155 (366)
T PRK14294 140 RIQKLETCEECHGSGC 155 (366)
T ss_pred EeeecccCCCCCCccc
Confidence 9999999999998544
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.2e-23 Score=203.80 Aligned_cols=154 Identities=34% Similarity=0.460 Sum_probs=108.6
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||++++ +.++++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-----------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-----------PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----------ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 4799999999999999999999999999999999875 66889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHH--H-hhh-----cc----cCCCCCCchHHHHHHHHH
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQ--N-WEA-----SA----SSQGKPKSLWEELAEVGE 229 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~--~-~~a-----~~----~~~~kp~d~~eel~~~~e 229 (300)
.. ....+... ... +++.+ ....+.++|..++..|. . +.. .. ....+..|+...|...++
T Consensus 71 ~~-~~~~~~~~--~~~---~~~~~---~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLe 141 (382)
T PRK14291 71 AF-SGSGQQQQ--GQE---GFSDF---GGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLE 141 (382)
T ss_pred cc-ccccCccc--ccc---ccccc---cCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHH
Confidence 21 11000000 000 11110 01123455555532221 0 010 00 011245678888899999
Q ss_pred HHHHHHHHhhhccccCccCCCCCCcc
Q 040804 230 EFVEFLEKELNITDPETETNEEPRQS 255 (300)
Q Consensus 230 ef~~~~ek~~~i~r~~~C~~c~g~~~ 255 (300)
+++.++++.+.+.+.+.|..|+|...
T Consensus 142 e~~~G~~~~i~~~r~~~C~~C~G~G~ 167 (382)
T PRK14291 142 EAYTGTTVSLEVPRYVPCEACGGTGY 167 (382)
T ss_pred HhhCCEEEEEEEeeeccCCCCccccC
Confidence 99999999999999999999998543
No 18
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.4e-23 Score=193.05 Aligned_cols=72 Identities=50% Similarity=0.806 Sum_probs=68.2
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..+|||+||||+++|+..|||+|||+||++||||||++ ++.|.+.|++|+.||+|||||++|+.||..+.
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd----------dp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPD----------DPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 46899999999999999999999999999999999998 79999999999999999999999999999985
Q ss_pred CC
Q 040804 161 TS 162 (300)
Q Consensus 161 ~~ 162 (300)
..
T Consensus 84 eg 85 (336)
T KOG0713|consen 84 EG 85 (336)
T ss_pred hh
Confidence 43
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.4e-23 Score=202.86 Aligned_cols=151 Identities=35% Similarity=0.455 Sum_probs=108.4
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-----------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-----------EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 3699999999999999999999999999999999875 66899999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.... ..+.. ......|.+ .+ .++|+|..|+..- .-........+..|+..+|...+|+++.++++.+.+
T Consensus 72 ~~~~-~~~~~-~~~~~~~~~--~~------~~~d~f~~~fgg~-~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~ 140 (376)
T PRK14280 72 GPNQ-GFGGG-GFGGGDFGG--GF------GFEDIFSSFFGGG-GRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEI 140 (376)
T ss_pred cccc-CcCCC-CCCCCCccc--cc------cchhhHHHHhCCc-cccCcccccccccCEEEEEEEEHHHHhCCceeEEEE
Confidence 2110 00000 000001110 01 2345666554210 000000112345678888999999999999999999
Q ss_pred cccCccCCCCCCc
Q 040804 242 TDPETETNEEPRQ 254 (300)
Q Consensus 242 ~r~~~C~~c~g~~ 254 (300)
.+.+.|..|.|..
T Consensus 141 ~r~~~C~~C~G~G 153 (376)
T PRK14280 141 PKEETCDTCHGSG 153 (376)
T ss_pred eeeccCCCCCCcc
Confidence 9999999999854
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=2.4e-23 Score=201.39 Aligned_cols=152 Identities=32% Similarity=0.474 Sum_probs=105.9
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||++++ +.++++|++|++||+||+|+.+|+.||+.+..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-----------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-----------EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 5799999999999999999999999999999999875 66899999999999999999999999998753
Q ss_pred CCCCCCCCC-CCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 162 SDFSYSTGP-SQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
......... ..... +++++..+...+.++|..+. |.. .......+..|+..++...+++++.|+++.+.
T Consensus 73 g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~~~~--fgg--~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~ 142 (378)
T PRK14283 73 GMDGFSQEDIFNNIN------FEDIFQGFGFGIGNIFDMFG--FGG--GSRHGPQRGADIYTEVEITLEEAASGVEKDIK 142 (378)
T ss_pred ccccccccccccccC------ccccccccccchhhhccccc--cCC--CCCCCccCCCCeEEEeeeeHHHHhCCcceEEE
Confidence 211000000 00000 00000000011223332220 000 01111235568889999999999999999999
Q ss_pred ccccCccCCCCCCc
Q 040804 241 ITDPETETNEEPRQ 254 (300)
Q Consensus 241 i~r~~~C~~c~g~~ 254 (300)
+.+.+.|..|.|..
T Consensus 143 ~~r~~~C~~C~G~G 156 (378)
T PRK14283 143 VRHTKKCPVCNGSR 156 (378)
T ss_pred eeeeccCCCCCccc
Confidence 99999999999854
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=2.9e-23 Score=200.34 Aligned_cols=150 Identities=35% Similarity=0.447 Sum_probs=106.8
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. .+.++++|++|++||+||+|+.+|+.||+.+..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG----------DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------cHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4699999999999999999999999999999999874 256889999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNI 241 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~i 241 (300)
.. ....+ . ..|.+++.| ...+.++|..++.. ..+.......+..|+..+|+..+|+++.++++.+.+
T Consensus 73 ~~-~~~~~-~-----~~~~~~~~~----~~~f~~~f~~~fgg--~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~ 139 (371)
T PRK10767 73 AF-EQGGG-G-----GGFGGGGGF----GDIFGDIFGDIFGG--GRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRI 139 (371)
T ss_pred cc-ccCCC-C-----CCCCCcccc----ccchhhhhhhhccC--CccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEee
Confidence 21 11000 0 011111111 01123344433210 000001112355688888999999999999999999
Q ss_pred cccCccCCCCCCc
Q 040804 242 TDPETETNEEPRQ 254 (300)
Q Consensus 242 ~r~~~C~~c~g~~ 254 (300)
.+.+.|..|+|..
T Consensus 140 ~r~~~C~~C~G~G 152 (371)
T PRK10767 140 PTLVTCDTCHGSG 152 (371)
T ss_pred eecccCCCCCCcc
Confidence 9999999999854
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.4e-23 Score=203.89 Aligned_cols=163 Identities=26% Similarity=0.358 Sum_probs=107.4
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++||.+|||+|||+||++||||++++ .+.++++|++|++||+||+|+.+|+.||+.+...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG----------DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------chHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 389999999999999999999999999999999875 3568999999999999999999999999987542
Q ss_pred CCCCCCC-CCCCCcc--cccccCCCcccccccchhHHhhhHHHHHHH-hh-hc-ccCCCCCCchHHHHHHHHHHHHHHHH
Q 040804 163 DFSYSTG-PSQNAQD--EEFYGFGNFLRDVQITIEDFFKDLQEEFQN-WE-AS-ASSQGKPKSLWEELAEVGEEFVEFLE 236 (300)
Q Consensus 163 ~~~~~~~-~~~~~~~--~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~-~~-a~-~~~~~kp~d~~eel~~~~eef~~~~e 236 (300)
......+ ....... ..+..+...+........++|..++..... ++ .. .....+..|+...|...+|+++.+++
T Consensus 71 ~~~g~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~ 150 (391)
T PRK14284 71 PFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVE 150 (391)
T ss_pred cccccCCcCCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCee
Confidence 1111000 0000000 000000000000000012444444321100 00 00 01123456888889999999999999
Q ss_pred HhhhccccCccCCCCCCcc
Q 040804 237 KELNITDPETETNEEPRQS 255 (300)
Q Consensus 237 k~~~i~r~~~C~~c~g~~~ 255 (300)
+.+.+.+.+.|..|.|...
T Consensus 151 ~~i~~~r~~~C~~C~G~G~ 169 (391)
T PRK14284 151 KELLVSGYKSCDACSGSGA 169 (391)
T ss_pred EEEEEeeeccCCCCccccc
Confidence 9999999999999987543
No 23
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.5e-23 Score=202.79 Aligned_cols=145 Identities=30% Similarity=0.370 Sum_probs=106.9
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++|+.+|||+|||+||++||||++++ +.++++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-----------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~ 71 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-----------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPL 71 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-----------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCcc
Confidence 699999999999999999999999999999999875 668999999999999999999999999987431
Q ss_pred CCCCCCCCCCCCcccccc-cCCCcccccccchhHHhhhHHHHHHHhhhc-ccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 163 DFSYSTGPSQNAQDEEFY-GFGNFLRDVQITIEDFFKDLQEEFQNWEAS-ASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~-g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~-~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
... .+.. ..|. +|+ .++++|..|+..- ..... .....+..|++..|...+|+++.++++.+.
T Consensus 72 ~~~--~~~~-----~g~~~~f~--------~~~d~f~~ffgg~-g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~ 135 (378)
T PRK14278 72 ESA--GGGG-----GGFGGGFG--------GLGDVFEAFFGGG-AASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVT 135 (378)
T ss_pred ccc--cCCC-----CCCCcCcC--------chhHHHHHHhCCC-CCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEE
Confidence 100 0000 0010 111 1345666554310 00000 011224568888899999999999999999
Q ss_pred ccccCccCCCCCCc
Q 040804 241 ITDPETETNEEPRQ 254 (300)
Q Consensus 241 i~r~~~C~~c~g~~ 254 (300)
+.+.+.|..|+|..
T Consensus 136 ~~~~~~C~~C~G~G 149 (378)
T PRK14278 136 VDTAVLCDRCHGKG 149 (378)
T ss_pred EEeeccCCCCcCcc
Confidence 99999999999754
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.2e-23 Score=201.20 Aligned_cols=158 Identities=28% Similarity=0.371 Sum_probs=107.6
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcC----
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDS---- 157 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~---- 157 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. .+.++++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~ 77 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG----------DAKAEERFKEISEAYDVLSDEKKRKEYDEARSL 77 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC----------chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhh
Confidence 4699999999999999999999999999999999864 25689999999999999999999999998
Q ss_pred CCCCCCCCCCCC-C-CCC--CcccccccC----CCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHH
Q 040804 158 GNRTSDFSYSTG-P-SQN--AQDEEFYGF----GNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGE 229 (300)
Q Consensus 158 ~~~~~~~~~~~~-~-~~~--~~~~~f~g~----g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~e 229 (300)
++... +....+ . ... ....++|+. +.. ..+...+.++|..++.. ........+..|+...|...+|
T Consensus 78 ~G~~g-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~f~d~f~~~fg~----~~~~~~~~~g~di~~~l~lsLe 151 (389)
T PRK14295 78 FGNGG-FRPGPGGGGGGGFNFDLGDLFGGGAQGGGG-AGGGGGLGDVFGGLFNR----GGRRTQPRRGADVESEVTLSFT 151 (389)
T ss_pred hcccc-cccCCCCCCCCCCCcccccccccccccccc-cccccchhhhhcccccC----CCCCCCCCCCCCEEEEEEEEHH
Confidence 55321 110000 0 000 000111110 000 00001133444433211 0011122356688888999999
Q ss_pred HHHHHHHHhhhccccCccCCCCCCcc
Q 040804 230 EFVEFLEKELNITDPETETNEEPRQS 255 (300)
Q Consensus 230 ef~~~~ek~~~i~r~~~C~~c~g~~~ 255 (300)
+++.++++.+.+.+.+.|..|+|...
T Consensus 152 e~~~G~~k~i~~~r~~~C~~C~G~G~ 177 (389)
T PRK14295 152 EAIDGATVPLRLTSQAPCPACSGTGA 177 (389)
T ss_pred HHhCCceEEEEeeccccCCCCccccc
Confidence 99999999999999999999998544
No 25
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.87 E-value=5.3e-23 Score=197.38 Aligned_cols=153 Identities=35% Similarity=0.413 Sum_probs=107.7
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCCC
Q 040804 84 SPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSD 163 (300)
Q Consensus 84 d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~~ 163 (300)
|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||+||+|+.+|+.||+.+....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-----------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-----------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 69999999999999999999999999999999864 5688999999999999999999999999875321
Q ss_pred CCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhc-ccCCCCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 040804 164 FSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEAS-ASSQGKPKSLWEELAEVGEEFVEFLEKELNIT 242 (300)
Q Consensus 164 ~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~-~~~~~kp~d~~eel~~~~eef~~~~ek~~~i~ 242 (300)
.. ..+.. ...|.+ +....+..+.++|..|+......... .....+..|+...++..+|+++.++++.+.+.
T Consensus 70 ~~-~~~~~----~~~~~~---~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~ 141 (354)
T TIGR02349 70 NG-GGGGG----GGGFNG---FDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIP 141 (354)
T ss_pred cc-cCcCC----CCCcCC---ccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEee
Confidence 11 00000 000101 00000112445555554310000000 01123456788889999999999999999999
Q ss_pred ccCccCCCCCCcc
Q 040804 243 DPETETNEEPRQS 255 (300)
Q Consensus 243 r~~~C~~c~g~~~ 255 (300)
+.+.|..|+|...
T Consensus 142 r~~~C~~C~G~G~ 154 (354)
T TIGR02349 142 RKESCETCHGTGA 154 (354)
T ss_pred cCCcCCCCCCCCC
Confidence 9999999998654
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=8.9e-23 Score=198.59 Aligned_cols=152 Identities=35% Similarity=0.453 Sum_probs=105.0
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++|+.+|||+|||+|+++||||+++. .+.++++|++|++||+||+|+.+|+.||+.+..+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~----------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD----------NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC----------chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 699999999999999999999999999999999875 2568899999999999999999999999987532
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHh---------------hhc--cc---CCCCCCchHH
Q 040804 163 DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNW---------------EAS--AS---SQGKPKSLWE 222 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~---------------~a~--~~---~~~kp~d~~e 222 (300)
... ..... .. ..|.+ +. ..++++|..|..-|... +.. .. ...+..|++.
T Consensus 73 ~~~-~~~~~-~~--~~~~~-~~------~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~ 141 (397)
T PRK14281 73 VGS-SAASG-GG--PGYGG-GG------GDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKI 141 (397)
T ss_pred hcc-ccccC-CC--CCCCc-CC------CCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEE
Confidence 111 00000 00 00100 00 01223332111111100 000 00 0123568888
Q ss_pred HHHHHHHHHHHHHHHhhhccccCccCCCCCCcc
Q 040804 223 ELAEVGEEFVEFLEKELNITDPETETNEEPRQS 255 (300)
Q Consensus 223 el~~~~eef~~~~ek~~~i~r~~~C~~c~g~~~ 255 (300)
.|+..+|+++.++++.+++.+.+.|..|+|...
T Consensus 142 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~ 174 (397)
T PRK14281 142 RLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGS 174 (397)
T ss_pred EEEeEHHHHhCCeEEEEEEEeeecCCCCCCccc
Confidence 899999999999999999999999999998543
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.9e-22 Score=194.36 Aligned_cols=152 Identities=27% Similarity=0.440 Sum_probs=108.2
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++|+.+|||+|||+|+++||||+++. ....+.++|++|++||+||+|+.+|+.||+.+...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG---------NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 699999999999999999999999999999999865 11368899999999999999999999999987532
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHH-HH--hh--hccc-CCCCCCchHHHHHHHHHHHHHHHH
Q 040804 163 DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEF-QN--WE--ASAS-SQGKPKSLWEELAEVGEEFVEFLE 236 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~-~~--~~--a~~~-~~~kp~d~~eel~~~~eef~~~~e 236 (300)
+.. .++ . | +++.+. ....+.++|..++... .. .. ...+ ...+..|++..|...+++++.+++
T Consensus 74 -~~~-~~~--~-----~-~~~~~~--~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~ 141 (365)
T PRK14290 74 -FGA-GGS--N-----F-NWDNFT--HFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTE 141 (365)
T ss_pred -ccc-CCC--C-----c-cccccc--cccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEE
Confidence 211 000 0 0 000000 0112345565554321 00 00 0001 112356888999999999999999
Q ss_pred HhhhccccCccCCCCCCcc
Q 040804 237 KELNITDPETETNEEPRQS 255 (300)
Q Consensus 237 k~~~i~r~~~C~~c~g~~~ 255 (300)
+.+.+.+.+.|..|+|...
T Consensus 142 ~~i~~~r~~~C~~C~G~g~ 160 (365)
T PRK14290 142 KRIKYRRNAMCPDCSGTGA 160 (365)
T ss_pred EEEEeeecccCCCCccccC
Confidence 9999999999999998654
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.7e-22 Score=193.71 Aligned_cols=151 Identities=28% Similarity=0.417 Sum_probs=107.3
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++||.+|||+|||+|+++||||+++. ..++++|++|++||+||+|+.+|+.||+++...
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-----------~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-----------KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 699999999999999999999999999999999865 568889999999999999999999999987432
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhh-ccc--CCCCCCchHHHHHHHHHHHHHHHHHhh
Q 040804 163 DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEA-SAS--SQGKPKSLWEELAEVGEEFVEFLEKEL 239 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a-~~~--~~~kp~d~~eel~~~~eef~~~~ek~~ 239 (300)
+....+..... +++++. ..++++|.+++..+..-.. ..+ ...+..|+...|...+++++.|+++.+
T Consensus 72 -~~~~~~~~~~g------~~~~~~----~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i 140 (372)
T PRK14300 72 -FQNQQSRGGGG------NHGGFH----PDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNI 140 (372)
T ss_pred -cccccccCCCC------CCCccc----cchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEE
Confidence 11100000000 001110 0123445555443211000 011 112456888899999999999999999
Q ss_pred hccccCccCCCCCCcc
Q 040804 240 NITDPETETNEEPRQS 255 (300)
Q Consensus 240 ~i~r~~~C~~c~g~~~ 255 (300)
.+.+.+.|..|+|...
T Consensus 141 ~~~r~~~C~~C~G~g~ 156 (372)
T PRK14300 141 SFSSEVKCDTCHGSGS 156 (372)
T ss_pred EeeeccccCCCCCccc
Confidence 9999999999998543
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6.4e-22 Score=191.07 Aligned_cols=147 Identities=34% Similarity=0.446 Sum_probs=107.9
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++|+.++||+|||+|+++||||+++. ..+.++|++|++||+||+||.+|+.||+.+...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-----------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-----------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 589999999999999999999999999999999875 668999999999999999999999999987542
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhc--ccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804 163 DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEAS--ASSQGKPKSLWEELAEVGEEFVEFLEKELN 240 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~--~~~~~kp~d~~eel~~~~eef~~~~ek~~~ 240 (300)
.. +.. . ...|-+++ ....++|..++... .+... .....+..|++.+++..+++++.|+++.+.
T Consensus 71 ~~----~~~-~--~~~~~~~~-------~d~~d~f~~~fg~~-~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~ 135 (371)
T PRK14292 71 GA----GMP-G--GDPFGGMG-------FDPMDIFEQLFGGA-GFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVE 135 (371)
T ss_pred cc----ccc-C--CcccCccC-------CChHHHHHHhhCCC-CcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEE
Confidence 11 000 0 00111111 12345665554311 00000 011224567888899999999999999999
Q ss_pred ccccCccCCCCCCcc
Q 040804 241 ITDPETETNEEPRQS 255 (300)
Q Consensus 241 i~r~~~C~~c~g~~~ 255 (300)
+.+.+.|..|+|...
T Consensus 136 ~~r~~~C~~C~G~G~ 150 (371)
T PRK14292 136 VDRLTECEHCHGSRT 150 (371)
T ss_pred EEeeecCCCCccccc
Confidence 999999999998554
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=1e-21 Score=190.63 Aligned_cols=150 Identities=29% Similarity=0.415 Sum_probs=105.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. .+.++++|++|++||+||+||.+|+.||..+..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~----------~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG----------DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999875 356899999999999999999999999997743
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhH---HHHH-HHh------hhc-c-cCCCCCCchHHHHHHHHH
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDL---QEEF-QNW------EAS-A-SSQGKPKSLWEELAEVGE 229 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~---~~~~-~~~------~a~-~-~~~~kp~d~~eel~~~~e 229 (300)
.. ....+. ..|.+ +. ..+.++|..| +..+ ... ... . ....+..|++..+...+|
T Consensus 74 ~~-~~~~~~------~~~~~-~~------~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLe 139 (386)
T PRK14289 74 GV-GGAAGG------GGFSG-EG------MSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLK 139 (386)
T ss_pred cc-ccCCCC------CCCCC-CC------cChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHH
Confidence 21 100000 00100 00 0112232222 1110 000 000 0 112245588888999999
Q ss_pred HHHHHHHHhhhccccCccCCCCCCcc
Q 040804 230 EFVEFLEKELNITDPETETNEEPRQS 255 (300)
Q Consensus 230 ef~~~~ek~~~i~r~~~C~~c~g~~~ 255 (300)
+++.++++.+++.+.+.|..|+|...
T Consensus 140 e~~~G~~~~i~~~r~~~C~~C~G~G~ 165 (386)
T PRK14289 140 EISTGVEKKFKVKKYVPCSHCHGTGA 165 (386)
T ss_pred HhhCCeEEEEEEEeecccCCCCCCCC
Confidence 99999999999999999999998553
No 31
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=9.8e-22 Score=189.95 Aligned_cols=147 Identities=35% Similarity=0.475 Sum_probs=106.7
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTS 162 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~~ 162 (300)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||..+...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----------~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g 71 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-----------PGAEDRFKEINRAYEVLSDPETRARYDQFGEAG 71 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----------cCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence 599999999999999999999999999999999875 568899999999999999999999999977431
Q ss_pred CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhh-----cccCCCCCCchHHHHHHHHHHHHHHHHH
Q 040804 163 DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEA-----SASSQGKPKSLWEELAEVGEEFVEFLEK 237 (300)
Q Consensus 163 ~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a-----~~~~~~kp~d~~eel~~~~eef~~~~ek 237 (300)
... +. . +-+++. + ..+.++|..++..+..... ......+..++..+|...+|+++.++++
T Consensus 72 -~~~--~~--~-----~~~~~~-~----~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k 136 (374)
T PRK14293 72 -VSG--AA--G-----FPDMGD-M----GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEK 136 (374)
T ss_pred -ccc--CC--C-----cCCccc-c----cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceE
Confidence 110 00 0 000000 0 1123455555432110000 0011224557888889999999999999
Q ss_pred hhhccccCccCCCCCCcc
Q 040804 238 ELNITDPETETNEEPRQS 255 (300)
Q Consensus 238 ~~~i~r~~~C~~c~g~~~ 255 (300)
.+.+.+.+.|..|+|...
T Consensus 137 ~i~~~r~~~C~~C~G~G~ 154 (374)
T PRK14293 137 EIRIPHLETCETCRGSGA 154 (374)
T ss_pred EEEeeccccCCCCCCcCC
Confidence 999999999999998554
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1.1e-20 Score=177.09 Aligned_cols=145 Identities=37% Similarity=0.471 Sum_probs=96.2
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++||.+|||+|||+|+++||||++++ +.++++|++|++||+||+|+.+|+.||+.+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-----------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4799999999999999999999999999999999875 66899999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhc-------ccCCCCCCchHHHHHHHHHHHHHH
Q 040804 162 SDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEAS-------ASSQGKPKSLWEELAEVGEEFVEF 234 (300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~-------~~~~~kp~d~~eel~~~~eef~~~ 234 (300)
.......+..... ..+.++..+ ....++++|..++......+.. .....+..|+...+...+++++.+
T Consensus 72 ~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G 146 (291)
T PRK14299 72 AASAGWQGPPPGP--PGGGDFSGF---NVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRG 146 (291)
T ss_pred cccccccCCCCCC--CCCCCcccc---CcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCC
Confidence 2110000000000 000011110 0112345565554311000000 011223457888899999999999
Q ss_pred HHHhhhcc
Q 040804 235 LEKELNIT 242 (300)
Q Consensus 235 ~ek~~~i~ 242 (300)
+++.+.+.
T Consensus 147 ~~~~i~l~ 154 (291)
T PRK14299 147 GEKVVEVA 154 (291)
T ss_pred CeEEEeeC
Confidence 99887654
No 33
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=173.72 Aligned_cols=148 Identities=29% Similarity=0.384 Sum_probs=96.3
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..++||+||||.++|++.+||++||+||++||||+++. ..+++.++|+.|+.||+|||||..|.+||++..
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd---------~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD---------RIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc---------cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 35789999999999999999999999999999999876 237899999999999999999999999999864
Q ss_pred CCCCCCCCC-CCCC------CcccccccCCCcccccccchhHHhhhHHH-HHHHhhhc---ccCCCC-CCchHHHHHHHH
Q 040804 161 TSDFSYSTG-PSQN------AQDEEFYGFGNFLRDVQITIEDFFKDLQE-EFQNWEAS---ASSQGK-PKSLWEELAEVG 228 (300)
Q Consensus 161 ~~~~~~~~~-~~~~------~~~~~f~g~g~~~~~~~~~~~~~f~~~~~-~~~~~~a~---~~~~~k-p~d~~eel~~~~ 228 (300)
.-..+-.+. +.+. .....+.|+++-...+|.-..++|..+.. ++..+..+ .|-+|. +.+.|..+ .++
T Consensus 77 qil~~~~s~~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ye~~~-~fY 155 (508)
T KOG0717|consen 77 QILRGKNSDTGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTDYEQVV-PFY 155 (508)
T ss_pred HHhcCCCCccccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCcHHHHH-HHH
Confidence 211100000 0000 01111234444333344333344444332 22222211 145553 44455555 999
Q ss_pred HHHHHHHHHh
Q 040804 229 EEFVEFLEKE 238 (300)
Q Consensus 229 eef~~~~ek~ 238 (300)
..|..|.+++
T Consensus 156 ~~W~afsT~K 165 (508)
T KOG0717|consen 156 QFWLAFSTKK 165 (508)
T ss_pred HHHHhhhhhh
Confidence 9999997654
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.2e-19 Score=167.82 Aligned_cols=68 Identities=51% Similarity=0.758 Sum_probs=65.0
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
.|||+||||+++|+..|||+||++|+|+||||.+.. ..+.++|++|.+|||||+|+++|+.||..+..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-----------~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-----------KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-----------cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 499999999999999999999999999999999987 68999999999999999999999999998854
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.76 E-value=1.4e-19 Score=170.62 Aligned_cols=140 Identities=26% Similarity=0.400 Sum_probs=96.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+|+.+|+.||..+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-----------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-----------PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 3699999999999999999999999999999999765 67899999999999999999999999987532
Q ss_pred C---CCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 040804 162 S---DFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKE 238 (300)
Q Consensus 162 ~---~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~ 238 (300)
. ++... +. +-+.+.+. ...+.++|..++....... ......+..|+..++...+++++.++++.
T Consensus 72 ~~~~~~~~~-~~--------~~~~~~~~---~~~~~~~f~~~~g~~~~~~-~~~~~~kg~di~~~v~isLee~~~G~~k~ 138 (306)
T PRK10266 72 RNDPQFNRQ-FQ--------HGDGQSFN---AEDFDDIFSSIFGQHARQS-RQRPAARGHDIEIEVAVFLEETLTEHKRT 138 (306)
T ss_pred ccCcccccc-cc--------cCCCCCCC---CCCHHHHHHHHhCCCCCCC-CCCCCCCCCceEEEEEEEHHHhcCCceEE
Confidence 1 11100 00 00000000 1123455555443110000 00112234578888899999999999998
Q ss_pred hhccccC
Q 040804 239 LNITDPE 245 (300)
Q Consensus 239 ~~i~r~~ 245 (300)
+.+.+.+
T Consensus 139 i~~~~~~ 145 (306)
T PRK10266 139 ISYNLPV 145 (306)
T ss_pred EEEeccc
Confidence 8887643
No 36
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=1e-18 Score=127.32 Aligned_cols=64 Identities=53% Similarity=0.950 Sum_probs=59.0
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhc
Q 040804 84 SPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYD 156 (300)
Q Consensus 84 d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD 156 (300)
|+|+||||+++++.++||++|+++++++|||++...+ ..+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~---------~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE---------AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH---------HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh---------hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999987611 248899999999999999999999998
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3e-18 Score=155.59 Aligned_cols=69 Identities=51% Similarity=0.803 Sum_probs=65.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..++|+||||+++|+.++|||+||+|+++||||++++ ++++.++|++||+||+||+||.+|..||..+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd----------~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGD----------NPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCC----------CchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 5789999999999999999999999999999999986 58899999999999999999999999999864
No 38
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=148.49 Aligned_cols=72 Identities=44% Similarity=0.693 Sum_probs=66.0
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|+|+||||.++|+..+||+|||+|+++||||+++. +.+.++.++|+.|+.||.||+|.++|+.||..+..
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~e--------ed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHE--------EDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchh--------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4699999999999999999999999999999999964 22478999999999999999999999999999854
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3e-17 Score=153.02 Aligned_cols=70 Identities=46% Similarity=0.754 Sum_probs=66.7
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|||+||||+.+|+..||++|||..+++||||||++ ++.|.++|+.|.+||+||+|+..|.+||..+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~----------dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG----------DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC----------ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999999998 688999999999999999999999999998854
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.5e-17 Score=158.70 Aligned_cols=73 Identities=37% Similarity=0.603 Sum_probs=66.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
+.++|.+|+|+++||.+|||+|||++++.|||||..+. +.+..|++.|++|.+|||||+||++|.+||..+..
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp-------d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q 80 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP-------DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ 80 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh-------hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence 45899999999999999999999999999999998752 23578999999999999999999999999998854
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.66 E-value=1e-16 Score=166.02 Aligned_cols=70 Identities=29% Similarity=0.413 Sum_probs=65.1
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...+||+||||+++||..+||+|||+||++||||+++. ..+.++|+.|++||+||+||.+|+.||.+|.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~-----------~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG-----------NEGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------chHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 35799999999999999999999999999999999976 4588899999999999999999999999875
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
.
T Consensus 640 ~ 640 (1136)
T PTZ00341 640 D 640 (1136)
T ss_pred c
Confidence 4
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.66 E-value=1.4e-16 Score=114.17 Aligned_cols=59 Identities=56% Similarity=0.827 Sum_probs=53.8
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchh
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSE 150 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~ 150 (300)
.|||+||||+++++.++||++|+++++++|||++... .+.+.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~---------~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD---------KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---------hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998741 2678999999999999999985
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.63 E-value=5.3e-16 Score=109.16 Aligned_cols=55 Identities=58% Similarity=0.992 Sum_probs=51.0
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhc
Q 040804 84 SPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLN 148 (300)
Q Consensus 84 d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd 148 (300)
|||+||||+++++.++||++||+|++++|||++.. ...+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~----------~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD----------DPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------cHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999865 15688999999999999986
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.58 E-value=2.5e-15 Score=127.90 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=59.7
Q ss_pred CCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 83 ESPYEVLGVAPSA--TADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 83 ~d~Y~iLgv~~~a--s~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..+|+||||+++| |.++||+|||++++++|||++++ .++|++|++||++|+|+.+|..||..+.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~--------------~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD--------------EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch--------------hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 4579999999999 99999999999999999999643 5799999999999999999999999885
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
.
T Consensus 71 ~ 71 (153)
T PHA03102 71 D 71 (153)
T ss_pred c
Confidence 4
No 45
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.56 E-value=3.6e-15 Score=151.63 Aligned_cols=68 Identities=46% Similarity=0.705 Sum_probs=63.5
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
.|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-----------~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-----------PDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 589999999999999999999999999999999875 56788999999999999999999999998743
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.3e-15 Score=129.40 Aligned_cols=67 Identities=55% Similarity=0.840 Sum_probs=62.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCc-hhHHHHHHHHHHHHHhhchhhhhhhcCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQP-NAEEKFMRIKHAYNTLLNSESRRKYDSG 158 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~-~a~~~f~~I~~AY~vLsd~~~R~~YD~~ 158 (300)
..++|+||||+++|+..|||+|||+++++||||+++. .+ .+.+.|+.|++||+||+|+..|..||..
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~----------~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPG----------DPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------chhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 5789999999999999999999999999999999986 23 3899999999999999999999999985
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.8e-15 Score=129.62 Aligned_cols=74 Identities=39% Similarity=0.727 Sum_probs=66.1
Q ss_pred hcCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcC
Q 040804 78 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDS 157 (300)
Q Consensus 78 ~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~ 157 (300)
......|||+||||+++++..|||+|||+|+++|||||++. ..+.++.|..|..||+.|+|...|..|..
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~----------~~~~e~~~~~I~KAY~aLTD~~sreN~ek 163 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPP----------EEGDEEFFEAIAKAYQALTDKKSRENWEK 163 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCC----------cchhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 33457899999999999999999999999999999999876 15678889999999999999999999998
Q ss_pred CCCC
Q 040804 158 GNRT 161 (300)
Q Consensus 158 ~~~~ 161 (300)
.+..
T Consensus 164 YG~P 167 (230)
T KOG0721|consen 164 YGNP 167 (230)
T ss_pred hCCC
Confidence 8753
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.54 E-value=9.2e-15 Score=137.40 Aligned_cols=76 Identities=39% Similarity=0.650 Sum_probs=67.4
Q ss_pred hcCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcC
Q 040804 78 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDS 157 (300)
Q Consensus 78 ~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~ 157 (300)
..+..+|||+||||.++|+..||-+|||+||.+||||-..+. +++..|+.+|..|..|-+||+||++|+.||.
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdE-------eEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDE-------EEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCH-------HHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 345679999999999999999999999999999999987651 2346799999999999999999999999998
Q ss_pred CCC
Q 040804 158 GNR 160 (300)
Q Consensus 158 ~~~ 160 (300)
+-.
T Consensus 462 GeD 464 (504)
T KOG0624|consen 462 GED 464 (504)
T ss_pred CCC
Confidence 753
No 49
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.5e-14 Score=128.35 Aligned_cols=128 Identities=26% Similarity=0.370 Sum_probs=99.8
Q ss_pred CCCcchhccCCC---CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCC
Q 040804 82 RESPYEVLGVAP---SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSG 158 (300)
Q Consensus 82 ~~d~Y~iLgv~~---~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~ 158 (300)
..|+|.+|||+. .+++.+|.++.++.+.+||||+....| .-...+.|+.|+.||+||+|+..|..||+.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--------~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--------NKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--------CCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 369999999987 789999999999999999999975422 366789999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcc--cCCCCCCchHHHHHHHHHHHHHHH
Q 040804 159 NRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASA--SSQGKPKSLWEELAEVGEEFVEFL 235 (300)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~--~~~~kp~d~~eel~~~~eef~~~~ 235 (300)
.-..+. ++.+...+..||. +|.++++...+++... |+.|...+...+|+++|++|++|-
T Consensus 114 df~adv----ppp~~~t~~~Ffe--------------~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFd 174 (379)
T COG5269 114 DFDADV----PPPRIYTPDEFFE--------------VWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFD 174 (379)
T ss_pred ccccCC----CCccCCCchhHHH--------------HHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhcc
Confidence 743332 2223333444433 7778877766666555 566766677899999999999983
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=2.2e-14 Score=124.70 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 83 ESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 83 ~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
.|||+||||++. ++..+||++||+|++++|||+....+.. .+..+.+.|..||+||+||+||.+|+.|+-...
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~-----~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASER-----ERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHH-----HHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999995 7889999999999999999997653211 123467899999999999999999999997664
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
+
T Consensus 76 g 76 (171)
T PRK05014 76 G 76 (171)
T ss_pred C
Confidence 3
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=4.1e-14 Score=122.42 Aligned_cols=72 Identities=21% Similarity=0.367 Sum_probs=61.2
Q ss_pred CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 83 ESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 83 ~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
.|||+||||++. ++..+|+++||+|++++|||++..... +..+.+.+..||+||+||+||.+|+.|+-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~-------k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQE-------KEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHH-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999996 789999999999999999999864111 13455678999999999999999999998775
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
+
T Consensus 75 g 75 (166)
T PRK01356 75 N 75 (166)
T ss_pred C
Confidence 4
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=7.3e-14 Score=121.54 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=64.4
Q ss_pred CCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCC
Q 040804 81 RRESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSG 158 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~ 158 (300)
...|||++|||++. .+..+|+++||+|++++|||++.+.+... +..+.+.+..||+||+||+||.+|+.|+-.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e-----~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPERE-----QRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHH-----HHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46799999999996 67899999999999999999986533211 245778899999999999999999999987
Q ss_pred CCC
Q 040804 159 NRT 161 (300)
Q Consensus 159 ~~~ 161 (300)
..+
T Consensus 77 l~g 79 (173)
T PRK00294 77 LSG 79 (173)
T ss_pred hcC
Confidence 754
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=1.1e-13 Score=120.89 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=62.2
Q ss_pred CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 82 RESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 82 ~~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
..|||+||||++. ++..+|+++||+|++++|||++...+... +..+.+.+..||+||+||+||.+|..|+-.+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e-----~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAE-----KRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHH-----HHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 4799999999995 68999999999999999999987533211 1345666799999999999999999999766
Q ss_pred CC
Q 040804 160 RT 161 (300)
Q Consensus 160 ~~ 161 (300)
.+
T Consensus 80 ~G 81 (176)
T PRK03578 80 RG 81 (176)
T ss_pred cC
Confidence 53
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.6e-14 Score=134.02 Aligned_cols=69 Identities=32% Similarity=0.543 Sum_probs=65.5
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
....|+|.+|||+.+++.++||+.||++|...|||||.. +.|+|.|+.|+.||++|+|+++|+.||..+
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-----------~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-----------PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-----------hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 347899999999999999999999999999999999987 889999999999999999999999999865
No 55
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.39 E-value=4.2e-13 Score=108.96 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=50.2
Q ss_pred hhhcCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhh
Q 040804 76 LLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLL 147 (300)
Q Consensus 76 ~~~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLs 147 (300)
+...+...++|+||||+++++.+|||++||+|++++|||+.. +.+.|++|++||++|.
T Consensus 58 f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--------------s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 58 FENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--------------STYIASKVNEAKDLLL 115 (116)
T ss_pred ccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--------------CHHHHHHHHHHHHHHh
Confidence 334455679999999999999999999999999999999843 3568899999999995
No 56
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.38 E-value=4.2e-13 Score=124.38 Aligned_cols=67 Identities=37% Similarity=0.453 Sum_probs=56.5
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhch
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNS 149 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~ 149 (300)
....++|+||||++++|.+|||++||+|+++||||+..+.+.++.. .+.++++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~---~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEM---MEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhh---HHHHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999998664433221 256899999999999999863
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2e-13 Score=123.27 Aligned_cols=68 Identities=43% Similarity=0.729 Sum_probs=64.1
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..|.|+||||.++++..||.+|||+|+++||||++++ +++.+.|..|..||++|.|.+.|..||-...
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----------~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----------PESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----------chhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 5799999999999999999999999999999999988 6777999999999999999999999998763
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.7e-13 Score=128.21 Aligned_cols=73 Identities=45% Similarity=0.718 Sum_probs=67.2
Q ss_pred hcCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcC
Q 040804 78 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDS 157 (300)
Q Consensus 78 ~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~ 157 (300)
..++.+|+|.||||..+|+..|||+|||++++.||||++.. ++.+++.+|++|.+||.||+||.+|..||+
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag---------sq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAG---------SQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc---------hhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 44668999999999999999999999999999999999976 247899999999999999999999999998
Q ss_pred CC
Q 040804 158 GN 159 (300)
Q Consensus 158 ~~ 159 (300)
.-
T Consensus 439 g~ 440 (486)
T KOG0550|consen 439 GQ 440 (486)
T ss_pred cc
Confidence 64
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-12 Score=119.41 Aligned_cols=70 Identities=46% Similarity=0.728 Sum_probs=63.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..|+|+||||.++|+.++||+||++++++||||+++.. ...+..+|++|.+||++|+|+.+|..||..+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~---------~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP---------KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc---------hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999998762 13566699999999999999999999999986
No 60
>PHA02624 large T antigen; Provisional
Probab=99.22 E-value=1.3e-11 Score=124.52 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=55.9
Q ss_pred CCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhh
Q 040804 82 RESPYEVLGVAPSA--TADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKY 155 (300)
Q Consensus 82 ~~d~Y~iLgv~~~a--s~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~Y 155 (300)
..++|+||||+++| +.++||+|||+++++||||+.+ ++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG--------------deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG--------------DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------------cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999853 367999999999999999999999
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=4.1e-11 Score=104.34 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=63.1
Q ss_pred CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 83 ESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 83 ~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
.|||++|||++. .+...++++|++|.+++|||+....+..+ +..+.+.-..||+||.||+||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~e-----q~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQE-----QRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHH-----HHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999995 89999999999999999999987644322 24577788999999999999999999987765
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.07 E-value=1.1e-10 Score=112.87 Aligned_cols=78 Identities=31% Similarity=0.580 Sum_probs=67.4
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
.+.-|+|+||||+.+++..+||++||+|+.++||||.+.-. .+.+.+-++.++.|++||+.|+|...|..|-..+
T Consensus 95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mv-----n~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMV-----NELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCC-----hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45689999999999999999999999999999999976511 1234678899999999999999999999998887
Q ss_pred CCC
Q 040804 160 RTS 162 (300)
Q Consensus 160 ~~~ 162 (300)
...
T Consensus 170 tPd 172 (610)
T COG5407 170 TPD 172 (610)
T ss_pred CCC
Confidence 543
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.05 E-value=2.8e-10 Score=97.70 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 95 ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 95 as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
.+..+|+++||+|++++|||+....+.. .+..+.+.+..||+||+||+||.+|+.|+-.+.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~-----~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g 64 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQ-----EQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG 64 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChh-----hhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 4788999999999999999997653221 1245788999999999999999999999998864
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.8e-09 Score=93.52 Aligned_cols=66 Identities=36% Similarity=0.612 Sum_probs=59.2
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhc
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYD 156 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD 156 (300)
+-|+|+||.|.|..+.++||+.||+|++..|||+|++ +.+.|...|-.|..||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~D---------d~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPD---------DAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcc---------cHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5789999999999999999999999999999999987 23778999999999999999998665433
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.5e-07 Score=83.12 Aligned_cols=57 Identities=32% Similarity=0.573 Sum_probs=52.0
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHH-Hhhch
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYN-TLLNS 149 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~-vLsd~ 149 (300)
...+|.||||..+|+.++++.||..|++++|||...+ +...++|.+|.+||. ||+..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-----------~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-----------EADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-----------cccHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998765 778899999999999 77654
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.6e-07 Score=94.05 Aligned_cols=58 Identities=38% Similarity=0.564 Sum_probs=49.3
Q ss_pred hcCCCCCcchhccCCC----CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhc
Q 040804 78 RASRRESPYEVLGVAP----SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLN 148 (300)
Q Consensus 78 ~~~~~~d~Y~iLgv~~----~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd 148 (300)
..+...+.|+||.|+- ....+.||++|++|+.+||||||+. ..++|.++|+|||.|+.
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-------------GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-------------GREMFERVNKAYELLSS 1337 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-------------HHHHHHHHHHHHHHHHH
Confidence 3345678999999985 3455899999999999999999854 78999999999999983
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.7e-06 Score=66.87 Aligned_cols=60 Identities=30% Similarity=0.375 Sum_probs=50.4
Q ss_pred hhhcCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhch
Q 040804 76 LLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNS 149 (300)
Q Consensus 76 ~~~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~ 149 (300)
+...+..+..-.||||+++++.+.||.|+|+.....|||+... ...-.+||||+++|...
T Consensus 49 F~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS--------------PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 49 FEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS--------------PYLASKINEAKDLLEGT 108 (112)
T ss_pred cccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC--------------HHHHHHHHHHHHHHhcc
Confidence 3444556778889999999999999999999999999998764 45566799999999654
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00012 Score=63.81 Aligned_cols=61 Identities=36% Similarity=0.539 Sum_probs=52.3
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHh
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTL 146 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vL 146 (300)
.+.|.+||+...++..+|+++|+++...+|||+....+.+..-. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~---~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFI---EKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHH---HHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999977655444332 67889999999999854
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00034 Score=59.51 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=58.0
Q ss_pred CCCcchhccCCC--CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 82 RESPYEVLGVAP--SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 82 ~~d~Y~iLgv~~--~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
..+||.++|... ...+.-++--|.-..++.|||+...... +....+.+...+||+||.+|.||-+|+.|=...
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~-----~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFA-----GDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCccccccccc-----ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 357899998654 5566777779999999999999543221 112467888999999999999999999998766
Q ss_pred CC
Q 040804 160 RT 161 (300)
Q Consensus 160 ~~ 161 (300)
.+
T Consensus 82 ~g 83 (168)
T KOG3192|consen 82 KG 83 (168)
T ss_pred hC
Confidence 43
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0023 Score=55.71 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=54.0
Q ss_pred cchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 85 PYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 85 ~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
+..++|+.+. ...+.++..|+.+.+.+|||+....+.... ..+.+.+..++.||.+|.||-.|..|=....
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~-----~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQ-----RKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 3445555553 245678999999999999999776443222 3466789999999999999999999987664
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.34 E-value=0.0036 Score=62.43 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHh
Q 040804 91 VAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTL 146 (300)
Q Consensus 91 v~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vL 146 (300)
+..-.+.++||++|||.++..||||....+.... .+=.+++.|-.+++|++.-
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~---qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLE---QKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHH---HHHHHHHHHHHHHHHHHhh
Confidence 4445799999999999999999999887653222 1235666677777777643
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.11 E-value=0.056 Score=44.90 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=43.4
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhh
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRR 153 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~ 153 (300)
+.......||||++..+.++|.+.|.+|-...+|++.+. -..-.+|..|.+.|....+..
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS--------------fYLQSKV~rAKErl~~El~~~ 114 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS--------------FYLQSKVFRAKERLEQELKEE 114 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999997653 556667999999987665443
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=0.8 Score=43.65 Aligned_cols=60 Identities=37% Similarity=0.499 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 94 SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 94 ~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
.++..+|..+|+..++.+||++..... .......+.+++|.+||.||.+...|...|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYE------KLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHH------HhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 357789999999999999999864100 001356788999999999999977666777655
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=85.30 E-value=1.6 Score=31.15 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHH
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLAL 109 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k 109 (300)
.+.|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998877
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=83.19 E-value=3.2 Score=36.91 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHh-hch
Q 040804 92 APSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTL-LNS 149 (300)
Q Consensus 92 ~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vL-sd~ 149 (300)
+++|+.|||.+|+.++..+|--| ++.-.+|..||+.| ++.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd------------------~~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD------------------EKSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998443 44556699999965 443
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=67.16 E-value=8.9 Score=31.08 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchh
Q 040804 94 SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSE 150 (300)
Q Consensus 94 ~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~ 150 (300)
..+..+++.|-|.+-++.|||....-.. .+...++-++.|+.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~------~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPE------EKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChH------HHHhhHHHHHHHHHHHHHHhccC
Confidence 4567889999999999999997554211 23566777888888888777654
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=50.66 E-value=53 Score=24.82 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCc
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVN 116 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~ 116 (300)
++.-+++|+.|-|++.||+.|-++.+++..=-..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~ 36 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTH 36 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 3455788999999999999999888888744433
No 78
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=39.94 E-value=29 Score=25.48 Aligned_cols=20 Identities=45% Similarity=0.833 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHhhCC
Q 040804 281 EESIDDIEATLAKLKKELGL 300 (300)
Q Consensus 281 ~d~~~e~~~~~~~~~~~~~~ 300 (300)
++.+++|+..|+++-+++||
T Consensus 52 ~~~~~~l~~~L~~l~~~~~l 71 (76)
T PF13740_consen 52 EDSLERLESALEELAEELGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT-
T ss_pred cccHHHHHHHHHHHHHHCCc
Confidence 67899999999999999996
No 79
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=38.11 E-value=30 Score=24.22 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..|++||
T Consensus 6 s~~EL~~~l~~lr~eL 21 (55)
T TIGR00012 6 SKEELAKKLDELKKEL 21 (55)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4789999999999987
No 80
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=37.08 E-value=31 Score=25.56 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHhh
Q 040804 282 ESIDDIEATLAKLKKEL 298 (300)
Q Consensus 282 d~~~e~~~~~~~~~~~~ 298 (300)
-+++||+..|..||+||
T Consensus 11 ~s~eeL~~~l~eLK~EL 27 (69)
T COG0255 11 KSVEELEEELRELKKEL 27 (69)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35899999999999997
No 81
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=35.53 E-value=1.6e+02 Score=22.35 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=26.7
Q ss_pred cchhccCCCCCCHHHHHHHHHHHHHHhCCCCccc
Q 040804 85 PYEVLGVAPSATADEIKRAYRKLALKYHPDVNKE 118 (300)
Q Consensus 85 ~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~ 118 (300)
--.+.|+.|-||.+||..|-.+.++|..=-..+.
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 3446688999999999999999999876554443
No 82
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=35.12 E-value=22 Score=17.92 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhh
Q 040804 135 KFMRIKHAYNTLL 147 (300)
Q Consensus 135 ~f~~I~~AY~vLs 147 (300)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 83
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=34.98 E-value=37 Score=23.97 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||+..|..||+||
T Consensus 8 s~~eL~~~l~elk~eL 23 (58)
T PF00831_consen 8 SDEELQEKLEELKKEL 23 (58)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4788999999999887
No 84
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.06 E-value=46 Score=24.16 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhhCC
Q 040804 283 SIDDIEATLAKLKKELGL 300 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~~~ 300 (300)
.+++|+..|+.|.++|||
T Consensus 52 ~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 52 DSEALLKDLLFKAHELGL 69 (75)
T ss_pred CHHHHHHHHHHHHHHcCc
Confidence 489999999999999996
No 85
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.54 E-value=1.7e+02 Score=24.34 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCcc
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK 117 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~ 117 (300)
....-+||+|++..+.++|.+.|..|-....+.+..
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 455678999999999999999999999887766644
No 86
>PF11637 UvsW: ATP-dependant DNA helicase UvsW; InterPro: IPR020975 This entry represents the DNA helicase UvsW from Enterobacteria phage T4. The protein is a member of the monomeric SF2 helicase superfamily and shows structural homology to the eukaryotic SF2 helicase Rad54. UvsW is thought to have a role in recombination and the rescue of stalled replication forks []. ; PDB: 2JPN_A.
Probab=29.24 E-value=35 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHhhCC
Q 040804 280 IEESIDDIEATLAKLKKELGL 300 (300)
Q Consensus 280 ~~d~~~e~~~~~~~~~~~~~~ 300 (300)
--||++|||.--.|=+||+.|
T Consensus 6 T~~Gl~ELEkyY~kR~KEv~l 26 (54)
T PF11637_consen 6 TLDGLEELEKYYKKRKKEVEL 26 (54)
T ss_dssp SHHHHHHHHHHHHHHTTTS--
T ss_pred ccccHHHHHHHHHHhhhhccc
Confidence 458999999999998888753
No 87
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.11 E-value=37 Score=29.69 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccccCccCCCCCCccC
Q 040804 225 AEVGEEFVEFLEKELNITDPETETNEEPRQSN 256 (300)
Q Consensus 225 ~~~~eef~~~~ek~~~i~r~~~C~~c~g~~~~ 256 (300)
..+-+.|++++.++++..-.-+-.+|+-+++.
T Consensus 74 R~fK~Qfv~hAt~KLr~iv~~tsancs~QVqq 105 (171)
T PF04799_consen 74 RAFKRQFVDHATEKLRLIVSFTSANCSHQVQQ 105 (171)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 67788999999999999988888889888876
No 88
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=29.08 E-value=63 Score=31.05 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.9
Q ss_pred cchhhhHHHHHHHHHHHHHhhC
Q 040804 278 SSIEESIDDIEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~e~~~~~~~~~~~~~ 299 (300)
..|.+.|.|||+.+..|||+|+
T Consensus 292 De~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 292 DEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999985
No 89
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=28.21 E-value=53 Score=23.81 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 10 s~~eL~~~l~~lkkeL 25 (66)
T PRK00306 10 SVEELNEKLLELKKEL 25 (66)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4788888888888887
No 90
>PHA02609 uvsW.1 hypothetical protein; Provisional
Probab=28.21 E-value=57 Score=24.39 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.4
Q ss_pred cchhhhHHHHHHHHHHHHHhhCC
Q 040804 278 SSIEESIDDIEATLAKLKKELGL 300 (300)
Q Consensus 278 ~~~~d~~~e~~~~~~~~~~~~~~ 300 (300)
=|--||++|||.--.|=+||..|
T Consensus 23 C~T~eGl~ELEkyY~kR~KE~el 45 (76)
T PHA02609 23 CQTLEGLEELEKYYKKRVKEVEL 45 (76)
T ss_pred cchhhhHHHHHHHHHHHHHhhcC
Confidence 45578999999999999999754
No 91
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=27.61 E-value=55 Score=24.11 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 13 s~~eL~~~l~elk~eL 28 (69)
T PRK14549 13 SPEEREEKLEELKLEL 28 (69)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4789999999999987
No 92
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=26.53 E-value=61 Score=22.76 Aligned_cols=16 Identities=44% Similarity=0.653 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||+..|..|++||
T Consensus 7 s~~eL~~~l~~l~~el 22 (57)
T cd00427 7 SDEELQEKLDELKKEL 22 (57)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4688888888888887
No 93
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=25.76 E-value=15 Score=30.83 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccCccCCCCCCccCccccCCCCcchhhhhcccccccchhhhHHHHHHHHHHHHHhhC
Q 040804 220 LWEELAEVGEEFVEFLEKELNITDPETETNEEPRQSNPFSSSATENTESRMRNEAGKGSSIEESIDDIEATLAKLKKELG 299 (300)
Q Consensus 220 ~~eel~~~~eef~~~~ek~~~i~r~~~C~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~~~~~~~~ 299 (300)
+...|+.+++.|.+-+.+.+++.. ..+..++.. .+-+ + ......-+-|+|.-+|..++.|++++|
T Consensus 88 ~~~~l~~~~~~f~~~Va~~R~~~~--------~~v~~~~~~--~~~~---~--~~A~~~GLiD~i~~~~~~~~~l~~~~~ 152 (154)
T PF01343_consen 88 LQELLDELYDQFVNDVAEGRGLSP--------DDVEEIADG--GVFT---A--QQALELGLIDEIGTFDEAIARLAKLAG 152 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-H--------HHHHCHHCC--HEEE---H--HHHHHTTSSSEETSHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCH--------HHHHHHHhh--cccc---H--HHHHHcCchhhcCCHHHHHHHHHHHcC
Confidence 556677778888888887777664 234444433 1111 1 122236677888888889999999887
Q ss_pred C
Q 040804 300 L 300 (300)
Q Consensus 300 ~ 300 (300)
|
T Consensus 153 v 153 (154)
T PF01343_consen 153 V 153 (154)
T ss_dssp S
T ss_pred C
Confidence 6
No 94
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=25.69 E-value=63 Score=23.74 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
.++||+..|..|++||
T Consensus 13 s~~eL~~~l~elk~el 28 (67)
T CHL00154 13 TDSEISEEIIKTKKEL 28 (67)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4788999999999886
No 95
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=22.90 E-value=79 Score=23.19 Aligned_cols=19 Identities=37% Similarity=0.622 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHhhCC
Q 040804 282 ESIDDIEATLAKLKKELGL 300 (300)
Q Consensus 282 d~~~e~~~~~~~~~~~~~~ 300 (300)
+.+++|+..|+.+.+++||
T Consensus 52 ~~~~~l~~~l~~~~~~~~l 70 (77)
T cd04893 52 DAIAKLEAALPGLARRLDL 70 (77)
T ss_pred ccHHHHHHHHHHHHHHcCC
Confidence 4689999999999999997
No 96
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=22.63 E-value=94 Score=18.86 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhCC
Q 040804 97 ADEIKRAYRKLALKYHP 113 (300)
Q Consensus 97 ~~eIK~aYr~l~k~~HP 113 (300)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999993
No 97
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=20.95 E-value=89 Score=16.77 Aligned_cols=10 Identities=60% Similarity=0.807 Sum_probs=7.5
Q ss_pred HHHHHHHHHh
Q 040804 288 EATLAKLKKE 297 (300)
Q Consensus 288 ~~~~~~~~~~ 297 (300)
++.|++||.|
T Consensus 2 ~aeLerLkne 11 (17)
T PF12107_consen 2 EAELERLKNE 11 (17)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 4678888876
No 98
>COG2879 Uncharacterized small protein [Function unknown]
Probab=20.71 E-value=1.6e+02 Score=21.59 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCCccc
Q 040804 102 RAYRKLALKYHPDVNKE 118 (300)
Q Consensus 102 ~aYr~l~k~~HPDk~~~ 118 (300)
..|-.-+++.|||+.+-
T Consensus 26 dnYVehmr~~hPd~p~m 42 (65)
T COG2879 26 DNYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHHhCcCCCcc
Confidence 35778889999999763
No 99
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=20.38 E-value=1.4e+02 Score=15.41 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHh
Q 040804 284 IDDIEATLAKLKKE 297 (300)
Q Consensus 284 ~~e~~~~~~~~~~~ 297 (300)
-+|...+++.|.+|
T Consensus 2 eee~~km~~~lare 15 (15)
T PF10550_consen 2 EEEVAKMAAELARE 15 (15)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHhcC
Confidence 36777778877665
No 100
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=20.37 E-value=1.1e+02 Score=17.48 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhh
Q 040804 285 DDIEATLAKLKKEL 298 (300)
Q Consensus 285 ~e~~~~~~~~~~~~ 298 (300)
-+||+.+++|.-|+
T Consensus 4 k~lEa~~qkLe~e~ 17 (21)
T PF02370_consen 4 KQLEADHQKLEAEK 17 (21)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47888899888764
Done!