Query 040804
Match_columns 300
No_of_seqs 385 out of 2223
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.8 3.8E-21 1.3E-25 145.1 8.0 72 80-161 4-75 (79)
2 2ctp_A DNAJ homolog subfamily 99.8 3.5E-21 1.2E-25 145.0 6.7 70 81-161 5-74 (78)
3 1hdj_A Human HSP40, HDJ-1; mol 99.8 5.1E-21 1.7E-25 143.8 6.9 68 82-160 2-69 (77)
4 2ctr_A DNAJ homolog subfamily 99.8 5.5E-21 1.9E-25 147.4 6.2 69 81-160 5-73 (88)
5 2cug_A Mkiaa0962 protein; DNAJ 99.8 9.7E-21 3.3E-25 146.0 7.2 70 81-161 15-84 (88)
6 2ej7_A HCG3 gene; HCG3 protein 99.8 1.4E-20 4.9E-25 142.9 7.1 72 81-161 7-78 (82)
7 2yua_A Williams-beuren syndrom 99.8 1.1E-20 3.8E-25 148.8 6.6 71 80-160 14-84 (99)
8 2och_A Hypothetical protein DN 99.8 1.3E-20 4.6E-25 140.1 6.6 66 82-160 7-72 (73)
9 2dmx_A DNAJ homolog subfamily 99.8 2.6E-20 8.9E-25 144.6 7.3 71 81-160 7-77 (92)
10 1wjz_A 1700030A21RIK protein; 99.8 1.1E-20 3.8E-25 147.0 4.6 78 80-161 13-90 (94)
11 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.7E-20 5.8E-25 148.7 5.5 70 82-161 2-71 (103)
12 2lgw_A DNAJ homolog subfamily 99.8 2E-20 6.7E-25 147.6 5.0 70 83-161 2-71 (99)
13 2ctw_A DNAJ homolog subfamily 99.8 4.7E-20 1.6E-24 147.8 6.8 71 80-160 14-84 (109)
14 2ctq_A DNAJ homolog subfamily 99.8 7.8E-20 2.7E-24 147.1 7.3 70 81-160 18-87 (112)
15 2o37_A Protein SIS1; HSP40, J- 99.8 7E-20 2.4E-24 142.3 5.5 67 81-160 6-72 (92)
16 2ys8_A RAB-related GTP-binding 99.8 5.5E-19 1.9E-23 136.8 6.4 63 81-154 25-87 (90)
17 3lz8_A Putative chaperone DNAJ 99.8 2.5E-21 8.6E-26 182.8 -8.8 147 80-248 25-171 (329)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.2E-18 4E-23 139.4 5.5 71 82-159 14-85 (109)
19 3apq_A DNAJ homolog subfamily 99.7 2.2E-18 7.5E-23 151.0 6.6 69 83-161 2-70 (210)
20 2l6l_A DNAJ homolog subfamily 99.7 2.2E-18 7.5E-23 146.0 5.8 77 80-160 7-83 (155)
21 1gh6_A Large T antigen; tumor 99.7 1.1E-18 3.7E-23 140.9 2.9 67 83-163 8-76 (114)
22 1faf_A Large T antigen; J doma 99.7 7.5E-18 2.6E-22 127.4 5.9 61 83-157 11-73 (79)
23 3hho_A CO-chaperone protein HS 99.7 4.6E-18 1.6E-22 146.9 5.4 75 82-161 3-79 (174)
24 3bvo_A CO-chaperone protein HS 99.7 6.6E-18 2.3E-22 149.7 6.1 84 73-161 33-118 (207)
25 1fpo_A HSC20, chaperone protei 99.7 6.7E-18 2.3E-22 145.5 5.4 73 84-161 2-76 (171)
26 1iur_A KIAA0730 protein; DNAJ 99.7 9.6E-18 3.3E-22 129.4 3.7 63 82-153 15-77 (88)
27 2pf4_E Small T antigen; PP2A, 99.7 5.1E-18 1.7E-22 146.3 1.1 66 82-161 10-77 (174)
28 1n4c_A Auxilin; four helix bun 99.7 4.4E-17 1.5E-21 141.3 4.7 66 83-155 117-182 (182)
29 2guz_A Mitochondrial import in 99.6 5.3E-17 1.8E-21 120.3 3.3 58 82-153 13-71 (71)
30 2qwo_B Putative tyrosine-prote 99.6 1.3E-16 4.4E-21 123.9 3.9 59 83-148 33-91 (92)
31 3ag7_A Putative uncharacterize 99.6 1.6E-16 5.6E-21 126.6 3.4 65 82-150 40-104 (106)
32 3uo3_A J-type CO-chaperone JAC 99.6 2.7E-16 9.1E-21 136.7 4.3 67 80-159 8-81 (181)
33 3apo_A DNAJ homolog subfamily 99.6 4.3E-16 1.5E-20 160.8 1.6 74 78-161 16-89 (780)
34 2y4t_A DNAJ homolog subfamily 99.0 1.2E-10 4E-15 109.0 5.4 70 82-158 381-450 (450)
35 2guz_B Mitochondrial import in 99.0 3.4E-10 1.2E-14 82.1 4.2 53 83-149 4-59 (65)
36 2pzi_A Probable serine/threoni 89.1 0.22 7.4E-06 50.1 3.4 48 80-145 626-675 (681)
37 1nlt_A Protein YDJ1, mitochond 67.0 0.14 4.9E-06 45.7 -6.0 41 216-256 10-50 (248)
38 2ctt_A DNAJ homolog subfamily 54.5 0.087 3E-06 40.6 -8.5 34 223-256 7-40 (104)
39 2bni_A General control protein 45.1 13 0.00044 22.8 2.1 22 278-299 4-32 (34)
40 1pzq_A Erythronolide synthase; 43.6 13 0.00043 24.8 2.0 25 275-299 5-29 (60)
41 3twe_A Alpha4H; unknown functi 41.4 22 0.00074 20.1 2.4 19 280-298 6-24 (27)
42 4h22_A Leucine-rich repeat fli 40.5 16 0.00056 28.1 2.5 21 278-298 33-53 (103)
43 2hy6_A General control protein 39.5 15 0.0005 22.5 1.7 22 278-299 4-32 (34)
44 2r2v_A GCN4 leucine zipper; co 36.8 17 0.00059 22.2 1.7 22 278-299 4-32 (34)
45 1kd8_A GABH AIV, GCN4 acid bas 35.5 18 0.00063 22.3 1.7 22 278-299 4-32 (36)
46 3c3g_A Alpha/beta peptide with 32.6 30 0.001 21.0 2.2 22 278-299 3-31 (33)
47 1uo4_A General control protein 32.2 31 0.0011 21.1 2.3 22 278-299 4-32 (34)
48 3agx_A DNAJ homolog subfamily 31.0 0.96 3.3E-05 38.3 -6.5 33 220-254 5-37 (181)
49 2wq1_A General control protein 29.6 36 0.0012 20.6 2.2 22 278-299 3-31 (33)
50 3c3f_A Alpha/beta peptide with 29.5 36 0.0012 20.7 2.2 22 278-299 4-32 (34)
51 1r73_A TM1492, 50S ribosomal p 29.1 32 0.0011 24.1 2.3 16 283-298 10-25 (66)
52 2v6x_B DOA4-independent degrad 27.8 23 0.00079 24.0 1.3 15 283-297 39-53 (54)
53 3r8s_Y 50S ribosomal protein L 27.2 30 0.001 24.0 1.9 16 283-298 10-25 (63)
54 3v2d_2 50S ribosomal protein L 25.1 41 0.0014 23.9 2.3 16 283-298 17-32 (72)
55 1vq8_V 50S ribosomal protein L 25.0 42 0.0014 23.8 2.3 16 283-298 13-28 (71)
56 3j21_W 50S ribosomal protein L 24.6 43 0.0015 23.9 2.3 16 283-298 10-25 (72)
57 2zjr_V 50S ribosomal protein L 23.8 36 0.0012 23.8 1.8 16 283-298 10-25 (67)
58 2c5k_T Syntaxin TLG1, T-snare 22.6 28 0.00097 26.1 1.1 22 277-298 38-59 (95)
59 1qqr_A Streptokinase domain B; 22.2 40 0.0014 27.2 1.9 32 84-115 33-64 (138)
60 1zme_C Proline utilization tra 22.0 52 0.0018 22.3 2.4 21 278-298 47-67 (70)
61 2jpn_A DAR protein, ATP-depend 21.6 40 0.0014 24.3 1.6 23 278-300 27-49 (79)
62 2ln3_A De novo designed protei 20.9 70 0.0024 22.4 2.8 21 280-300 37-57 (83)
63 1cf7_A Protein (transcription 20.8 1.3E+02 0.0045 21.4 4.4 44 94-158 9-52 (76)
64 1hyw_A GPW, head-TO-tail joini 20.6 68 0.0023 22.6 2.7 18 283-300 39-56 (68)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=145.11 Aligned_cols=72 Identities=42% Similarity=0.719 Sum_probs=65.8
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
....|+|+||||+++|+.++||+|||+|+++||||+++. .+.+.++|++|++||+||+||.+|+.||..+
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD----------DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS----------CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------CHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 346799999999999999999999999999999999875 3568999999999999999999999999987
Q ss_pred CC
Q 040804 160 RT 161 (300)
Q Consensus 160 ~~ 161 (300)
..
T Consensus 74 ~~ 75 (79)
T 2dn9_A 74 SG 75 (79)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 2
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=145.04 Aligned_cols=70 Identities=44% Similarity=0.746 Sum_probs=65.3
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...|+|+||||+++|+.++||+|||+|+++||||++.. +.+.++|++|++||+||+||.+|+.||..+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-----------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-----------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 46799999999999999999999999999999999876 6688999999999999999999999999875
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
.
T Consensus 74 ~ 74 (78)
T 2ctp_A 74 G 74 (78)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=5.1e-21 Score=143.78 Aligned_cols=68 Identities=49% Similarity=0.789 Sum_probs=64.0
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..|+|+||||+++|+.++||+|||+|++++|||+++. +.+.++|+.|++||+||+||.+|+.||..+.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-----------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-----------PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4689999999999999999999999999999999876 6689999999999999999999999999874
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-21 Score=147.36 Aligned_cols=69 Identities=48% Similarity=0.798 Sum_probs=64.9
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...+||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||+||+||.+|+.||..+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-----------PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-----------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 45799999999999999999999999999999999875 6789999999999999999999999999874
No 5
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=9.7e-21 Score=145.98 Aligned_cols=70 Identities=46% Similarity=0.785 Sum_probs=65.3
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||+||+||.+|+.||..+.
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-----------PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-----------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 36799999999999999999999999999999999876 6789999999999999999999999999874
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
.
T Consensus 84 ~ 84 (88)
T 2cug_A 84 G 84 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=142.90 Aligned_cols=72 Identities=42% Similarity=0.636 Sum_probs=64.8
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...|+|+||||+++++.++||+|||+|+++||||+++.. .+.+.++|++|++||+||+||.+|+.||..+.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN---------KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT---------HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 357999999999999999999999999999999998751 14678999999999999999999999999874
Q ss_pred C
Q 040804 161 T 161 (300)
Q Consensus 161 ~ 161 (300)
.
T Consensus 78 ~ 78 (82)
T 2ej7_A 78 G 78 (82)
T ss_dssp C
T ss_pred c
Confidence 3
No 7
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=148.79 Aligned_cols=71 Identities=42% Similarity=0.657 Sum_probs=65.4
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
....+||+||||+++|+.++||+|||+|+++||||+++. .+.+.++|++|++||+||+||.+|+.||..+
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG----------SAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS----------CSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 346899999999999999999999999999999999875 3678999999999999999999999999976
Q ss_pred C
Q 040804 160 R 160 (300)
Q Consensus 160 ~ 160 (300)
.
T Consensus 84 ~ 84 (99)
T 2yua_A 84 L 84 (99)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.82 E-value=1.3e-20 Score=140.13 Aligned_cols=66 Identities=45% Similarity=0.850 Sum_probs=61.1
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
..++|+||||+++|+.++||+|||+|++++|||++++ +.++|++|++||+||+||.+|+.||..+.
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-------------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-------------GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-------------CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-------------HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 5799999999999999999999999999999999865 36899999999999999999999998763
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=144.57 Aligned_cols=71 Identities=45% Similarity=0.714 Sum_probs=64.6
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||+||+||.+|+.||..+.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD---------NKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSS---------CSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---------cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 35799999999999999999999999999999999875 124688999999999999999999999999774
No 10
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.81 E-value=1.1e-20 Score=146.97 Aligned_cols=78 Identities=32% Similarity=0.543 Sum_probs=66.4
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
....|+|+||||+++|+.++||+|||+|+++||||+++...... ..+.+.++|++|++||+||+||.+|+.||..+
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~----~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAG----TMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHH----HHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChh----hhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 34689999999999999999999999999999999986311100 12568899999999999999999999999988
Q ss_pred CC
Q 040804 160 RT 161 (300)
Q Consensus 160 ~~ 161 (300)
.+
T Consensus 89 ~~ 90 (94)
T 1wjz_A 89 SG 90 (94)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 11
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.81 E-value=1.7e-20 Score=148.70 Aligned_cols=70 Identities=44% Similarity=0.771 Sum_probs=64.8
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
..|+|+||||+++|+.++||+|||+|+++||||+++. .+.+.++|++|++||+||+||.+|+.||..+..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG----------DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTT----------TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC----------cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 4689999999999999999999999999999999875 256889999999999999999999999998854
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=147.56 Aligned_cols=70 Identities=44% Similarity=0.681 Sum_probs=63.6
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
.|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||+||+||.+|+.||..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD---------NKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCS---------CCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---------cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 589999999999999999999999999999999875 1246889999999999999999999999997643
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.7e-20 Score=147.76 Aligned_cols=71 Identities=46% Similarity=0.743 Sum_probs=65.1
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
....++|+||||+++|+.++||+|||+|+++||||+++. .+.+.++|++|++||+||+||.+|+.||..+
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~----------~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD----------NPEAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC----------cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 346899999999999999999999999999999999875 3568899999999999999999999999877
Q ss_pred C
Q 040804 160 R 160 (300)
Q Consensus 160 ~ 160 (300)
.
T Consensus 84 ~ 84 (109)
T 2ctw_A 84 S 84 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-20 Score=147.08 Aligned_cols=70 Identities=34% Similarity=0.563 Sum_probs=64.9
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...|||+||||+++|+.++||+|||+|+++||||++++ .+.+.++|++|++||+||+||.+|+.||..+.
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE----------NPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTT----------CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 45899999999999999999999999999999999874 36789999999999999999999999998764
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7e-20 Score=142.34 Aligned_cols=67 Identities=42% Similarity=0.704 Sum_probs=61.6
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
...|+|+||||+++|+.++||+|||+|+++||||+++. ..++|++|++||+||+||.+|+.||..+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-------------DTEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-------------CHHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------------hHHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 35789999999999999999999999999999999865 35799999999999999999999998763
No 16
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-19 Score=136.80 Aligned_cols=63 Identities=35% Similarity=0.621 Sum_probs=58.8
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhh
Q 040804 81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRK 154 (300)
Q Consensus 81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~ 154 (300)
...|+|+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+|+.+|+.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-----------~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-----------PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-----------TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------ccHHHHHHHHHHHHHHHCCcccccC
Confidence 35899999999999999999999999999999999976 6789999999999999999998864
No 17
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.76 E-value=2.5e-21 Score=182.76 Aligned_cols=147 Identities=27% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
+...|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+.+
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-----------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-----------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-----------hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 345899999999999999999999999999999999876 578999999999999999999999999974
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 040804 160 RTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKEL 239 (300)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~ 239 (300)
..... .+..... .+.+ +.|. ...+.++|..++.....- .......+..|+..+|...+++.+.++++.+
T Consensus 94 ~~~~~---~~~~~~~---~~~~-~~f~---~~~f~diF~~~Fg~~g~~-~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i 162 (329)
T 3lz8_A 94 QHRND---PGFGRQR---QTHE-QSYS---QQDFDDIFSSMFGQQAHQ-RRRQHAARGHDLEIEVAVFLEETLAEQTRTI 162 (329)
T ss_dssp ------------------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEE
T ss_pred ccccC---CCccccc---cccc-CCcC---CCchhhhhHhhhcCcCCC-CCCCCcCCCCCEEEEEecchhhhhhccceEE
Confidence 32110 0000000 0000 0010 012345666655431110 0111234566888889999999999999999
Q ss_pred hccccCccC
Q 040804 240 NITDPETET 248 (300)
Q Consensus 240 ~i~r~~~C~ 248 (300)
.+.+.+.|.
T Consensus 163 ~i~~~v~~g 171 (329)
T 3lz8_A 163 SYNLPVYNV 171 (329)
T ss_dssp EEEEEECCS
T ss_pred EEEEEeecC
Confidence 999877654
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.74 E-value=1.2e-18 Score=139.38 Aligned_cols=71 Identities=38% Similarity=0.486 Sum_probs=63.9
Q ss_pred CCCcchhccCCCCC-CHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 82 RESPYEVLGVAPSA-TADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 82 ~~d~Y~iLgv~~~a-s~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
..|+|+||||+++| +.++||+|||+|++++|||++++.. ..+.+.++|++|++||+||+||.+|+.||..+
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~-------~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~ 85 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKE-------EKLLAEERFRVIATAYETLKDDEAKTNYDYYL 85 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHH-------HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-------ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 57999999999999 9999999999999999999986411 12568899999999999999999999999876
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.73 E-value=2.2e-18 Score=151.01 Aligned_cols=69 Identities=42% Similarity=0.760 Sum_probs=64.1
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
.|||+||||+++|+.++||+|||+|+++||||+++. .+.+.++|++|++||+||+||.+|+.||..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~----------~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN----------NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTT----------CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 589999999999999999999999999999999865 367899999999999999999999999998754
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=145.96 Aligned_cols=77 Identities=32% Similarity=0.543 Sum_probs=65.5
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
....|||+||||+++|+.++||+|||+|++++|||+++..+.... .+.+.++|++|++||+||+||.+|+.||..+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~----~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGT----VEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHH----HHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhH----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345799999999999999999999999999999999876321111 1357899999999999999999999999866
Q ss_pred C
Q 040804 160 R 160 (300)
Q Consensus 160 ~ 160 (300)
.
T Consensus 83 ~ 83 (155)
T 2l6l_A 83 C 83 (155)
T ss_dssp H
T ss_pred c
Confidence 4
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.72 E-value=1.1e-18 Score=140.94 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=60.7
Q ss_pred CCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804 83 ESPYEVLGVAPSATA--DEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR 160 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~--~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~ 160 (300)
.++|+||||+++|+. ++||+|||+|++++|||+++. .++|++|++||+||+||.+|+.||..+.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--------------~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--------------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--------------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 589999999999999 999999999999999999764 4689999999999999999999998765
Q ss_pred CCC
Q 040804 161 TSD 163 (300)
Q Consensus 161 ~~~ 163 (300)
.+.
T Consensus 74 ~w~ 76 (114)
T 1gh6_A 74 FWD 76 (114)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 22
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.71 E-value=7.5e-18 Score=127.43 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=55.8
Q ss_pred CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcC
Q 040804 83 ESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDS 157 (300)
Q Consensus 83 ~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~ 157 (300)
.++|+||||+++ ++.++||+|||+|++++|||++++ .++|++|++||+||+|+.+|..++-
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--------------~~~f~~i~~AYe~L~~~~~r~~~~~ 73 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--------------HALMQELNSLWGTFKTEVYNLRMNL 73 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--------------HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------------HHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 579999999999 999999999999999999998643 5799999999999999999988553
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.71 E-value=4.6e-18 Score=146.87 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=64.1
Q ss_pred CCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 82 RESPYEVLGVAPSAT--ADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as--~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
..|||+||||+++++ .++||++||+|+++||||++++.+... +..+.++|+.|++||+||+||.+|+.||..+
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e-----~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERD-----RLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHH-----HHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHH-----HHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 479999999999887 999999999999999999987633211 1337799999999999999999999999877
Q ss_pred CC
Q 040804 160 RT 161 (300)
Q Consensus 160 ~~ 161 (300)
.+
T Consensus 78 ~g 79 (174)
T 3hho_A 78 QG 79 (174)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.71 E-value=6.6e-18 Score=149.70 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=67.5
Q ss_pred hhhhhhcCCCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchh
Q 040804 73 FSTLLRASRRESPYEVLGVAPS--ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSE 150 (300)
Q Consensus 73 ~~~~~~~~~~~d~Y~iLgv~~~--as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~ 150 (300)
+...+......|||+||||+++ ++.++||++||+|+++||||++++.+... +..+.++|+.|++||+||+||.
T Consensus 33 c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e-----~~~a~~~f~~In~AY~vLsdp~ 107 (207)
T 3bvo_A 33 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTE-----KDFSEKHSTLVNDAYKTLLAPL 107 (207)
T ss_dssp TCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHH-----HHHHHHHHHHHHHHHHHHHSHH
T ss_pred ccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHCCHH
Confidence 3333343446899999999986 79999999999999999999987633211 1347789999999999999999
Q ss_pred hhhhhcCCCCC
Q 040804 151 SRRKYDSGNRT 161 (300)
Q Consensus 151 ~R~~YD~~~~~ 161 (300)
+|+.||..+.+
T Consensus 108 ~R~~Yd~~l~G 118 (207)
T 3bvo_A 108 SRGLYLLKLHG 118 (207)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 99999976543
No 25
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.70 E-value=6.7e-18 Score=145.49 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=63.6
Q ss_pred CcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCCC
Q 040804 84 SPYEVLGVAPSA--TADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRT 161 (300)
Q Consensus 84 d~Y~iLgv~~~a--s~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~~ 161 (300)
|||+||||++++ +.++||++||+|+++||||++++.+... +..+.++|+.|++||+||+||.+|+.||..+.+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e-----~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g 76 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAE-----QLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHH-----HHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence 799999999999 9999999999999999999987633211 134678999999999999999999999998754
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.68 E-value=9.6e-18 Score=129.41 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=56.4
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhh
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRR 153 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~ 153 (300)
..++|+||||+++|+.+|||+|||+|+++||||++++. .+.+.++|++|++||+||+|...|.
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~---------~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN---------HDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC---------HHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---------hHHHHHHHHHHHHHHHHHHhhcccc
Confidence 46899999999999999999999999999999998751 1357899999999999999998773
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.67 E-value=5.1e-18 Score=146.26 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=57.7
Q ss_pred CCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804 82 RESPYEVLGVAPSAT--ADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN 159 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as--~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~ 159 (300)
..++|+||||+++|+ .++||+|||+|++++|||++++ +++|++|++||+||+||.+|+.||+.+
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--------------~e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------------EEKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--------------CTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--------------HHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 368999999999998 6999999999999999999764 368999999999999999999999987
Q ss_pred CC
Q 040804 160 RT 161 (300)
Q Consensus 160 ~~ 161 (300)
..
T Consensus 76 ~~ 77 (174)
T 2pf4_E 76 GF 77 (174)
T ss_dssp GC
T ss_pred Cc
Confidence 53
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.65 E-value=4.4e-17 Score=141.27 Aligned_cols=66 Identities=27% Similarity=0.478 Sum_probs=58.7
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhh
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKY 155 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~Y 155 (300)
.++|+||||+++|+.++||+|||+|+++||||++++... ...+.++|++|++||+||+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~-------e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-------EQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT-------HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch-------HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 689999999999999999999999999999999875111 013889999999999999999999987
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.3e-17 Score=120.26 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCCcchhccCCC-CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhh
Q 040804 82 RESPYEVLGVAP-SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRR 153 (300)
Q Consensus 82 ~~d~Y~iLgv~~-~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~ 153 (300)
..++|+||||++ +++.++||+|||+|+++||||++.. .++|++|++||++|+|+..|+
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~--------------~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--------------PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC--------------HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------------HHHHHHHHHHHHHHhhhhhcC
Confidence 468999999999 7999999999999999999999542 569999999999999987663
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=1.3e-16 Score=123.92 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=51.5
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhc
Q 040804 83 ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLN 148 (300)
Q Consensus 83 ~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd 148 (300)
.++|++|||+++|+.+|||+|||+++++||||++++... ...++++|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-------~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-------EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-------HhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999875110 12478999999999999976
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.61 E-value=1.6e-16 Score=126.57 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=53.4
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchh
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSE 150 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~ 150 (300)
..|||+|||++. |+.++||+|||+|+++||||+++..+.... ....++++|++|++||+||+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e---~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASAN---QKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHH---HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchh---hHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 999999999999999999999875221100 01357899999999999999985
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.60 E-value=2.7e-16 Score=136.65 Aligned_cols=67 Identities=22% Similarity=0.411 Sum_probs=60.1
Q ss_pred CCCCCcchhc------cCCC-CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhh
Q 040804 80 SRRESPYEVL------GVAP-SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESR 152 (300)
Q Consensus 80 ~~~~d~Y~iL------gv~~-~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R 152 (300)
....|||+|| |+++ +|+.++||+|||+|+++||||++++ +.++|+.|++||+||+||.+|
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------------a~~~f~~i~~AY~vL~dp~~R 74 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-------------GSEQSSTLNQAYHTLKDPLRR 74 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-------------CSSGGGSHHHHHHHHHSHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-------------HHHHHHHHHHHHHHHcChHHH
Confidence 3457999999 4665 8999999999999999999999864 567899999999999999999
Q ss_pred hhhcCCC
Q 040804 153 RKYDSGN 159 (300)
Q Consensus 153 ~~YD~~~ 159 (300)
+.||..+
T Consensus 75 ~~Yd~~l 81 (181)
T 3uo3_A 75 SQYMLKL 81 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999866
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.56 E-value=4.3e-16 Score=160.81 Aligned_cols=74 Identities=39% Similarity=0.714 Sum_probs=40.8
Q ss_pred hcCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcC
Q 040804 78 RASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDS 157 (300)
Q Consensus 78 ~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~ 157 (300)
......|||+||||+++|+.++||+|||+|+++||||++++ .+.+.++|++|++||++|+||.+|+.||+
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~----------~~~~~~~f~~i~~ay~~L~~~~~r~~yd~ 85 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN----------NPNAHGDFLKINRAYEVLKDEDLRKKYDK 85 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC---------------------------------CTHHHHHHSHHHHHHHTT
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------ChHHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 34456899999999999999999999999999999999864 36688999999999999999999999999
Q ss_pred CCCC
Q 040804 158 GNRT 161 (300)
Q Consensus 158 ~~~~ 161 (300)
.+..
T Consensus 86 ~~~~ 89 (780)
T 3apo_A 86 YGEK 89 (780)
T ss_dssp C---
T ss_pred hccc
Confidence 8854
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.05 E-value=1.2e-10 Score=109.02 Aligned_cols=70 Identities=41% Similarity=0.685 Sum_probs=56.7
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCC
Q 040804 82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSG 158 (300)
Q Consensus 82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~ 158 (300)
..++|.+||+...++.++|+++|+++++++|||+.+.... +..+.++|+.|++||++|+|+++|+.||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~-------~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE-------KKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHH-------HHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchH-------HHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 4689999999999999999999999999999999865110 145889999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.4e-10 Score=82.14 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCcchhccCCCC---CCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhch
Q 040804 83 ESPYEVLGVAPS---ATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNS 149 (300)
Q Consensus 83 ~d~Y~iLgv~~~---as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~ 149 (300)
...|.||||+++ ++.++|+++||+|...+|||+... .....+|++|+++|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS--------------~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS--------------FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHHHHHH
Confidence 457999999999 999999999999999999998643 67888899999999764
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.10 E-value=0.22 Score=50.15 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHH
Q 040804 80 SRRESPYEVLGVAPSATA--DEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145 (300)
Q Consensus 80 ~~~~d~Y~iLgv~~~as~--~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~v 145 (300)
...+++|.+||++-++.. .+|+++||+|++..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------------------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------------------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------------------HHHHHHHHHhccc
Confidence 445679999999766555 67999999999965544 4688888888876
No 37
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=67.03 E-value=0.14 Score=45.67 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhccccCccCCCCCCccC
Q 040804 216 KPKSLWEELAEVGEEFVEFLEKELNITDPETETNEEPRQSN 256 (300)
Q Consensus 216 kp~d~~eel~~~~eef~~~~ek~~~i~r~~~C~~c~g~~~~ 256 (300)
+..|+..+|...+||++.++++.+++.+.+.|..|+|....
T Consensus 10 ~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~ 50 (248)
T 1nlt_A 10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGK 50 (248)
T ss_dssp BCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBS
T ss_pred CCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCC
Confidence 45678888899999999999999999999999999986543
No 38
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.54 E-value=0.087 Score=40.63 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhccccCccCCCCCCccC
Q 040804 223 ELAEVGEEFVEFLEKELNITDPETETNEEPRQSN 256 (300)
Q Consensus 223 el~~~~eef~~~~ek~~~i~r~~~C~~c~g~~~~ 256 (300)
+|...+|+++.+.++++.+.+.+.|..|+|....
T Consensus 7 ~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~ 40 (104)
T 2ctt_A 7 GMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNE 40 (104)
T ss_dssp CCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSC
T ss_pred EEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccC
Confidence 3456788899999999999999999999986543
No 39
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.12 E-value=13 Score=22.76 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=16.5
Q ss_pred cchhhhHHH-------HHHHHHHHHHhhC
Q 040804 278 SSIEESIDD-------IEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~e-------~~~~~~~~~~~~~ 299 (300)
||++|-++| ||..+++||+=||
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 677777764 6888999998776
No 40
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=43.55 E-value=13 Score=24.78 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=20.0
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhC
Q 040804 275 GKGSSIEESIDDIEATLAKLKKELG 299 (300)
Q Consensus 275 ~~~~~~~d~~~e~~~~~~~~~~~~~ 299 (300)
.-+-.|.|-++|||..|+.|..|=|
T Consensus 5 spavdigdrldelekalealsaedg 29 (60)
T 1pzq_A 5 SPAVDIGDRLDELEKALEALSAEDG 29 (60)
T ss_dssp CSCSTTHHHHHHHHHHHHHHTTSSC
T ss_pred CcccchhhHHHHHHHHHHHhccccc
Confidence 3346789999999999999876644
No 41
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.45 E-value=22 Score=20.06 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 040804 280 IEESIDDIEATLAKLKKEL 298 (300)
Q Consensus 280 ~~d~~~e~~~~~~~~~~~~ 298 (300)
+-..+++|...|.||.|.|
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456889999999999876
No 42
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.48 E-value=16 Score=28.05 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=18.3
Q ss_pred cchhhhHHHHHHHHHHHHHhh
Q 040804 278 SSIEESIDDIEATLAKLKKEL 298 (300)
Q Consensus 278 ~~~~d~~~e~~~~~~~~~~~~ 298 (300)
--+.|-++|+|.++++|+||+
T Consensus 33 dlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999986
No 43
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.49 E-value=15 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.616 Sum_probs=16.3
Q ss_pred cchhhhHHH-------HHHHHHHHHHhhC
Q 040804 278 SSIEESIDD-------IEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~e-------~~~~~~~~~~~~~ 299 (300)
||++|.+|| ||...++||+-||
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 677777765 5777888888776
No 44
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.83 E-value=17 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=15.5
Q ss_pred cchhhhHHH-------HHHHHHHHHHhhC
Q 040804 278 SSIEESIDD-------IEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~e-------~~~~~~~~~~~~~ 299 (300)
||++|-+|| ||-.+++|++=||
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 567776665 5667778887776
No 45
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.51 E-value=18 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=15.7
Q ss_pred cchhhhHHH-------HHHHHHHHHHhhC
Q 040804 278 SSIEESIDD-------IEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~e-------~~~~~~~~~~~~~ 299 (300)
||++|-++| ||...++||+.||
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 566666654 5777888888876
No 46
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.59 E-value=30 Score=20.97 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=16.1
Q ss_pred cchhhhHH-------HHHHHHHHHHHhhC
Q 040804 278 SSIEESID-------DIEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~-------e~~~~~~~~~~~~~ 299 (300)
||++|-++ +||..+++||.=||
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 56666665 46888888988776
No 47
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=32.19 E-value=31 Score=21.09 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=15.8
Q ss_pred cchhhhHH-------HHHHHHHHHHHhhC
Q 040804 278 SSIEESID-------DIEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~-------e~~~~~~~~~~~~~ 299 (300)
||++|-+| +||..+++||+=||
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 56666655 46888888888775
No 48
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=31.00 E-value=0.96 Score=38.26 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccCccCCCCCCc
Q 040804 220 LWEELAEVGEEFVEFLEKELNITDPETETNEEPRQ 254 (300)
Q Consensus 220 ~~eel~~~~eef~~~~ek~~~i~r~~~C~~c~g~~ 254 (300)
+..+|...+|+++.|+++.+.+.+ .|..|.|+.
T Consensus 5 ~~~~l~islee~~~G~~k~i~i~~--~c~~c~G~g 37 (181)
T 3agx_A 5 VTHDLRVSLEEIYSGCTKKMKISH--KRLNPDGKS 37 (181)
T ss_dssp -CEEEEECHHHHHHCEEEEEEEEE--EEECTTSSC
T ss_pred EEEEEEEEHHHhcCCcEEEEEEec--ccCCCCCce
Confidence 444566789999999999998876 699999853
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.61 E-value=36 Score=20.62 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.8
Q ss_pred cchhhhHH-------HHHHHHHHHHHhhC
Q 040804 278 SSIEESID-------DIEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~-------e~~~~~~~~~~~~~ 299 (300)
||++|-++ +||...++||+=||
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46666655 46888888888776
No 50
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.55 E-value=36 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=15.9
Q ss_pred cchhhhHH-------HHHHHHHHHHHhhC
Q 040804 278 SSIEESID-------DIEATLAKLKKELG 299 (300)
Q Consensus 278 ~~~~d~~~-------e~~~~~~~~~~~~~ 299 (300)
||++|-++ +||...++||+=||
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 56676665 46788888888776
No 51
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=29.14 E-value=32 Score=24.07 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 10 s~~EL~~~l~elk~EL 25 (66)
T 1r73_A 10 TDEELKNLLEEKKRQL 25 (66)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4689999999999987
No 52
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.81 E-value=23 Score=23.98 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHh
Q 040804 283 SIDDIEATLAKLKKE 297 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~ 297 (300)
.-+||++-|..|||+
T Consensus 39 ~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 39 PDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhccC
Confidence 579999999999986
No 53
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=27.25 E-value=30 Score=23.98 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 10 s~~EL~~~l~elk~El 25 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQ 25 (63)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4789999999999987
No 54
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=25.06 E-value=41 Score=23.95 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 17 s~eEL~~~L~elk~EL 32 (72)
T 3v2d_2 17 SPVELEKLVREKKREL 32 (72)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4789999999999987
No 55
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=24.96 E-value=42 Score=23.84 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 13 s~~EL~~~l~elk~EL 28 (71)
T 1vq8_V 13 TPAEREAELDDLKTEL 28 (71)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4689999999999987
No 56
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.63 E-value=43 Score=23.88 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 10 s~~EL~~~L~elk~EL 25 (72)
T 3j21_W 10 SIEEIDAKIRELRLQL 25 (72)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4689999999999987
No 57
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=23.83 E-value=36 Score=23.84 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhh
Q 040804 283 SIDDIEATLAKLKKEL 298 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~ 298 (300)
..+||...|..||+||
T Consensus 10 s~~EL~~~l~elk~EL 25 (67)
T 2zjr_V 10 QATDFAKEIDARKKEL 25 (67)
T ss_dssp CHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4689999999999987
No 58
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.62 E-value=28 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=17.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhh
Q 040804 277 GSSIEESIDDIEATLAKLKKEL 298 (300)
Q Consensus 277 ~~~~~d~~~e~~~~~~~~~~~~ 298 (300)
...+++.++||+++|.-|.+-.
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI 59 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSI 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999998887643
No 59
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=22.18 E-value=40 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.7
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 040804 84 SPYEVLGVAPSATADEIKRAYRKLALKYHPDV 115 (300)
Q Consensus 84 d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk 115 (300)
-++.+|.|....+.+|++++=..+..++|||=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 45788889999999999999999999999994
No 60
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.97 E-value=52 Score=22.25 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.8
Q ss_pred cchhhhHHHHHHHHHHHHHhh
Q 040804 278 SSIEESIDDIEATLAKLKKEL 298 (300)
Q Consensus 278 ~~~~d~~~e~~~~~~~~~~~~ 298 (300)
.++++-|++||..|++|...|
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888887655
No 61
>2jpn_A DAR protein, ATP-dependent DNA helicase UVSW; bacteriophage helicase, hydrolase; NMR {Enterobacteria phage T4}
Probab=21.63 E-value=40 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhCC
Q 040804 278 SSIEESIDDIEATLAKLKKELGL 300 (300)
Q Consensus 278 ~~~~d~~~e~~~~~~~~~~~~~~ 300 (300)
=+--||++|||.--.|=+||+.|
T Consensus 27 C~T~dGl~ELEkyY~kR~KEv~i 49 (79)
T 2jpn_A 27 CQTLEGLEELEAYYKKRVKETEL 49 (79)
T ss_dssp CCSHHHHHHHHHHHHHHTTTSCC
T ss_pred ccccccHHHHHHHHHHhhhhccC
Confidence 45579999999999999998754
No 62
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.93 E-value=70 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHhhCC
Q 040804 280 IEESIDDIEATLAKLKKELGL 300 (300)
Q Consensus 280 ~~d~~~e~~~~~~~~~~~~~~ 300 (300)
-+..|+|+|+.++.|.|.-|+
T Consensus 37 ddkeieeferdmedlakktgv 57 (83)
T 2ln3_A 37 DDKEIEEFERDMEDLAKKTGV 57 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHhHHHHHHHhhch
Confidence 355699999999999998775
No 63
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=20.78 E-value=1.3e+02 Score=21.40 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCC
Q 040804 94 SATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSG 158 (300)
Q Consensus 94 ~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~ 158 (300)
+.+...+-+.|-++... +||..-. |++|-+.|.-.++|+.||-.
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~i~--------------------l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGVLD--------------------LKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTEEE--------------------HHHHHHHTTTCCTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCcCc--------------------HHHHHHHhCCccceehhhHH
Confidence 44667778888887754 4554433 77888888665799999964
No 64
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=20.56 E-value=68 Score=22.63 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhhCC
Q 040804 283 SIDDIEATLAKLKKELGL 300 (300)
Q Consensus 283 ~~~e~~~~~~~~~~~~~~ 300 (300)
+|+||.+.++.|+.+||.
T Consensus 39 si~~L~~~I~~le~~Lg~ 56 (68)
T 1hyw_A 39 SVSDLKKYIAELEVQTGM 56 (68)
T ss_dssp THHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 589999999999999984
Done!