BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040805
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 215/391 (54%), Gaps = 19/391 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+Q+GR+ L +F +RS L L YR+ + P T + P H DAD + FV G+ +T+
Sbjct: 25 NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL 84
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ ++R+SYN+ GD R+P+G T+Y+ N D + L I+K +N PG+Y+ F+ + +
Sbjct: 85 VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQ 144
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEG 328
+S+L+ FS ILE++F ++ + + RVLF +Q +G +V+ SK+QIR LSR +
Sbjct: 145 AQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKS 204
Query: 329 PSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388
S + E FNL + P +SNNFG+ FE L DLDI +S +I++GA+
Sbjct: 205 SSRKTISSEDE-PFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263
Query: 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448
P +NS++ + V+ GD IE+ + +EE + + + D
Sbjct: 264 PHFNSKAIVILVINEGDANIELVGIKEQQQ--------KQKQEEEPLEVQRYRAELSEDD 315
Query: 449 AYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTR 507
+++PA +P V A+ +NL + F INAE N R LAG ++ + + +E + +ELAF
Sbjct: 316 VFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGS 373
Query: 508 ADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
A +VER+ Q + +F P + + +GR
Sbjct: 374 AQDVERLLKKQRESYFVDAQPQQKEEGSKGR 404
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 19/391 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+Q+GR+ L +F +RS L L YR+ + P T + P H DAD + FV G+ +T+
Sbjct: 25 NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL 84
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ ++R+SYN+ GD R+P+G T+Y+ N D + L I+K +N PG+Y+ F+ + +
Sbjct: 85 VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQ 144
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEG 328
+S+L+ FS ILE++F ++ + + RVL +Q +G +V+ SK+QIR LSR +
Sbjct: 145 AQQSYLQGFSHNILETSFHSEFEEINRVLLGEEEEQRQQEGVIVELSKEQIRQLSRRAKS 204
Query: 329 PSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388
S + E FNL + P +SNNFG+ FE L DLDI +S +I++GA+
Sbjct: 205 SSRKTISSEDE-PFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263
Query: 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448
P +NS++ + V+ GD IE+ + +EE + + + D
Sbjct: 264 PHFNSKAIVILVINEGDANIELVGIKEQQQ--------KQKQEEEPLEVQRYRAELSEDD 315
Query: 449 AYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTR 507
+++PA +P V A+ +NL + F INAE N R LAG ++ + + +E + +ELAF
Sbjct: 316 VFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGS 373
Query: 508 ADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
A +VER+ Q + +F P + + +GR
Sbjct: 374 AQDVERLLKKQRESYFVDAQPQQKEEGSKGR 404
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 215 bits (547), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 212/404 (52%), Gaps = 34/404 (8%)
Query: 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
S+R +Q+GR+ L +F QRS+ + L+ +R+ + A P T V P H DAD + + GQ
Sbjct: 14 STRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQ 73
Query: 210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
T+TV NNR+S+N+ G +R+PSG Y+ N D++ L + K +N PGQ+E F+
Sbjct: 74 ATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFF 133
Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQ---------------------DQ 308
A + S+L+ FS LE+AF + + + RVL ++ ++
Sbjct: 134 PASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNE 193
Query: 309 GAMVKASKQQIRALSRSQEGPSIWPFAGESRGT----FNLFGKRPSHSNNFGELFEADSN 364
G +VK SK+ + L++ S+ E G NL P SNNFG+LFE +
Sbjct: 194 GVIVKVSKEHVEELTK--HAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPD 251
Query: 365 DFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERR 423
P L+DLD+ ++ I +GA+ P +NS++ + VV G G +E+ + RR
Sbjct: 252 KKNPQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRR 311
Query: 424 HQGSSTREEGSATYHKV---SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGN 480
+ EE + +V ++R++ +I+PA HPV AS + L ++ F INAE N
Sbjct: 312 EEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINAS--SELHLLGFGINAENN 369
Query: 481 IRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWF 523
R LAG ++ + +E +AK+LAF ++VE++ NQ + F
Sbjct: 370 HRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKESHF 413
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 212/404 (52%), Gaps = 34/404 (8%)
Query: 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
S+R +Q+GR+ L +F QRS+ + L+ +R+ + A P T V P H DAD + + GQ
Sbjct: 15 STRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQ 74
Query: 210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
T+TV NNR+S+N+ G +R+PSG Y+ N D++ L + K +N PGQ+E F+
Sbjct: 75 ATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFF 134
Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQ---------------------DQ 308
A + S+L+ FS LE+AF + + + RVL ++ ++
Sbjct: 135 PASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNE 194
Query: 309 GAMVKASKQQIRALSRSQEGPSIWPFAGESRGT----FNLFGKRPSHSNNFGELFEADSN 364
G +VK SK+ + L++ S+ E G NL P SNNFG+LFE +
Sbjct: 195 GVIVKVSKEHVEELTK--HAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPD 252
Query: 365 DFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERR 423
P L+DLD+ ++ I +GA+ P +NS++ + VV G G +E+ + RR
Sbjct: 253 KKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRR 312
Query: 424 HQGSSTREEGSATYHKV---SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGN 480
+ EE + +V ++R++ +I+PA HPV AS + L ++ F INAE N
Sbjct: 313 EEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINAS--SELHLLGFGINAENN 370
Query: 481 IRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWF 523
R LAG ++ + +E +AK+LAF ++VE++ NQ + F
Sbjct: 371 HRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKESHF 414
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/391 (32%), Positives = 214/391 (54%), Gaps = 19/391 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+Q+GR+ L +F +RS L L YR+ + P T + P H DAD + FV G+ +T+
Sbjct: 25 NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL 84
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ ++R+SYN+ GD R+P+G T+Y+ N D + L ++ +N PG+Y+ F+ + +
Sbjct: 85 VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQ 144
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEG 328
+S+L+ FS ILE++F ++ + + RVLF +Q +G +V+ SK+QIR LSR +
Sbjct: 145 AQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKS 204
Query: 329 PSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388
S + E FNL + P +SNNFG+ FE L DLDI +S +I++GA+
Sbjct: 205 SSRKTISSEDE-PFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263
Query: 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448
P +NS++ + V+ GD IE+ + +EE + + + D
Sbjct: 264 PHFNSKAIVILVINEGDANIELVGIKEQQQ--------KQKQEEEPLEVQRYRAELSEDD 315
Query: 449 AYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTR 507
+++PA +P V A+ +NL + F INAE N R LAG ++ + + +E + +ELAF
Sbjct: 316 VFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGS 373
Query: 508 ADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
A +VER+ Q + +F P + + +GR
Sbjct: 374 AQDVERLLKKQRESYFVDAQPQQKEEGSKGR 404
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 218/396 (55%), Gaps = 24/396 (6%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+Q+G V L +F +RS+ L+ L YR+ + P T + P H DAD + + G +T+
Sbjct: 22 NQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTL 81
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ ++R+SYN++ GD +RVP+G T+YV N D+DE L ++ +N PG++E+F+ + +
Sbjct: 82 VNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQ 141
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQG-----------AMVKASKQQIRALS 323
+S+L+ FS ILE+++ TK + + +VLF +++G +V+ SK+QIR LS
Sbjct: 142 AQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQIRELS 201
Query: 324 RSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK 383
+ + S + E + FNL + P +SN G+LFE L DLD+ +S ++++
Sbjct: 202 KHAKSSSRKTISSEDK-PFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNE 260
Query: 384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSR 443
GA+ P +NS++ V V+ G+ IE+ + ++ Q R K +
Sbjct: 261 GALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVR--------KYRAE 312
Query: 444 IRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKEL 502
+ +++PAG+PVV A+ ++L F INAE N R LAG ++ + + S+ +EL
Sbjct: 313 LSEQDIFVIPAGYPVVVNAT--SDLNFFAFGINAENNQRNFLAGSKDNVISQIPSQVQEL 370
Query: 503 AFNTRADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
AF A ++E + +Q + +F P + + +GR
Sbjct: 371 AFPGSAKDIENLIKSQSESYFVDAQPQQKEEGNKGR 406
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 206/395 (52%), Gaps = 24/395 (6%)
Query: 154 TSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT 213
T+Q+G + L +F QRSK ++ LE YR+ + P T + P H DAD + V G+ +T
Sbjct: 35 TNQYGHLRILHRFDQRSKQIQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGRAILT 94
Query: 214 VIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGG 273
++ ++R+SY +++G ++P+G TF++ N DD+E L I+K +N P +++ F+ +
Sbjct: 95 LVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSST 154
Query: 274 ENPESFLRAFSWEILESAFKTKRDSLERVLF-----------QQDQGAMVKASKQQIRAL 322
E +S+LR FS ILE++F + + RVLF +++G +V+ ++QI+ L
Sbjct: 155 EAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQEL 214
Query: 323 SRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANIS 382
+ + S + + FNL +P +SN FG +E L+DLD+ +S ++
Sbjct: 215 MKHAKSSSRKELSSQDE-PFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMK 273
Query: 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS 442
+GA+ P YNS++ + V+ G+ IE+ Q ++E S + +
Sbjct: 274 EGALLLPHYNSKAIVIMVINEGEAKIELVG---------LSDQQQQKQQEESLEVQRYRA 324
Query: 443 RIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR-FPLAGRNKIFKVMESEAKE 501
+ D +++PA +PV A+ +NL F INAE N R F G++ + + +E E
Sbjct: 325 ELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNQRNFLAGGKDNVMSEIPTEVLE 382
Query: 502 LAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQG 536
++F +VE++ Q + F Q+++G
Sbjct: 383 VSFPASGKKVEKLIKKQSESHFVDAQPEQQQREEG 417
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 201/391 (51%), Gaps = 24/391 (6%)
Query: 158 GRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE 217
G + L +F QRSK ++ LE YR+ + P T + P H DAD + V G +T++
Sbjct: 40 GHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNP 99
Query: 218 NNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPE 277
++R+SY +++G ++P+G TF++ N DD+E L I+K +N P +++ F+ + E +
Sbjct: 100 DSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQ 159
Query: 278 SFLRAFSWEILESAFKTKRDSLERVLF-----------QQDQGAMVKASKQQIRALSRSQ 326
S+LR FS ILE++F + + RVLF +++G +V+ ++QI+ L +
Sbjct: 160 SYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKHA 219
Query: 327 EGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM 386
+ S + + FNL +P +SN FG +E L+DLD+ +S ++ +GA+
Sbjct: 220 KSSSRKELSSQDE-PFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGAL 278
Query: 387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT 446
P Y+S++ + V+ G+ IE+ Q ++E S + + +
Sbjct: 279 LLPHYSSKAIVIMVINEGEAKIELVG---------LSDQQQQKQQEESLEVQRYRAELSE 329
Query: 447 DSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR-FPLAGRNKIFKVMESEAKELAFN 505
D +++PA +PV A+ +NL F INAE N R F G++ + + +E E++F
Sbjct: 330 DDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFP 387
Query: 506 TRADEVERVFGNQDQDWFFKGPSRWHQQQQG 536
+VE++ Q + F Q+++G
Sbjct: 388 ASGKKVEKLIKKQSESHFVDAQPEQQQREEG 418
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 198/386 (51%), Gaps = 17/386 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+QHG + L +F + ++ L L YR+ + P T + P H D+D + V GQ + +
Sbjct: 62 NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL 121
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ + R++Y + +GD I++ +G FY+ N D+++ L I+KF + PG E F+ + +
Sbjct: 122 VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 181
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKASKQQIRALSRSQEGPSIWP 333
S+L AFS LE+++ + D +E+ L Q++Q G +VK K QI+ +S+ + S
Sbjct: 182 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKT 241
Query: 334 FAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNS 393
+ + + FNL + P +SNN+G+L+E L DLDI ++ +++GA+ P YNS
Sbjct: 242 LSSQDK-PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNS 300
Query: 394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453
R+T + V G +E+ + + S + ++ + ++P
Sbjct: 301 RATVILVANEGRAEVELVG-----------LEQQQQQGLESMQLRRYAATLSEGDIIVIP 349
Query: 454 AGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVE 512
+ PV A+ ++L +V +NAE N R LAG + + + + + +L F +EVE
Sbjct: 350 SSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVE 407
Query: 513 RVFGNQDQDWFFKGPSRWHQQQQGRA 538
+ NQ + +F G R H G+A
Sbjct: 408 ELLENQKESYFVDGQPR-HIDAGGKA 432
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 202/396 (51%), Gaps = 24/396 (6%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+Q G + L +F QRSK ++ LE YR+ + P T + P H DAD + V G+ +T+
Sbjct: 31 NQFGHLRVLQRFDQRSKQMQNLENYRVVEFNSKPNTLLLPHHADADFLLVVLNGRAVLTL 90
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ + R+S +++G ++P+G TF++ N DD+E L I+K +N P +++ F+ + E
Sbjct: 91 VNPDGRDSNILEQGHAQKIPAGTTFFLVNPDDEENLRIIKLAVPVNNPHRFQDFFLSSTE 150
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------------QQDQGAMVKASKQQIRAL 322
+S+L+ FS ILE++F + + RVLF Q +G +V+ ++QIR L
Sbjct: 151 AQQSYLQGFSKNILEASFDSDIKEISRVLFGEEGQQQQQGQESQQEGVIVELKREQIREL 210
Query: 323 SRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANIS 382
++ + S + E + FNL ++P +SN G FE L DLD+ + ++
Sbjct: 211 TKHAKSSSKKSLSSEDQ-PFNLRNQKPIYSNKLGRWFEITPEKNPQLRDLDMFIRSVDMK 269
Query: 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS 442
+G++ P YNS++ + V+ G IE+ +R Q +E S + +
Sbjct: 270 EGSLLLPHYNSKAIVILVINEGKANIELV--------GQREQQKQQEEQEESWEVQRYRA 321
Query: 443 RIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKE 501
+ D +I+PA +PV A+ +NL F INAE N R LAG ++ + + +E +
Sbjct: 322 ELSEDDVFIIPATYPVAINAT--SNLNFFAFGINAENNQRNFLAGEKDNVISEIPTEVLD 379
Query: 502 LAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGR 537
+ F ++V+++ Q + F ++++ R
Sbjct: 380 VTFPASGEKVQKLIKKQSESQFVDAQPEQQEREEAR 415
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 188/398 (47%), Gaps = 49/398 (12%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+Q+G + L +F Q+SK L+ LE YRL + P+T + P DA+ + V G + +
Sbjct: 28 NQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVL 87
Query: 215 IRENNRESY------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAF 268
++ ++R Y N D ++P+G FY+ N D E L I++ +N P Q F
Sbjct: 88 VKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP-QIHEF 146
Query: 269 YGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQ---QDQGAMVKASKQQIRALSRS 325
+ + E +S+L+ FS ILE++F +K + + RVLF+ Q +G +V +QI+ LS+
Sbjct: 147 FLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKH 206
Query: 326 QEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGA 385
+ S + + N G N FG L E N L++ +S + +GA
Sbjct: 207 AKSSSRKSLSKQD----NTIG------NEFGNLTERTDN------SLNVLISSIEMEEGA 250
Query: 386 MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIR 445
+ P Y S++ + VV G+ ++E+ P ++ + E Y + +
Sbjct: 251 LFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLE---------------YESYRAELS 295
Query: 446 TDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR-----NKIFKVMES-EA 499
D +++PA +PV A+ N N F INA N R LAG+ + I + ++ +
Sbjct: 296 KDDVFVIPAAYPVAIKATSNVNF--TGFGINANNNNRNLLAGKTDNVISSIGRALDGKDV 353
Query: 500 KELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGR 537
L F+ DEV ++ Q +F +QQ+GR
Sbjct: 354 LGLTFSGSGDEVMKLINKQSGSYFVDAHHHQQEQQKGR 391
>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|A Chain A, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|C Chain C, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|E Chain E, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 181
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+QHG + L +F + ++ L L YR+ + P T + P H D+D + V GQ + +
Sbjct: 19 NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL 78
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ + R++Y + +GD I++ +G FY+ N D+++ L I+KF + PG E F+ + +
Sbjct: 79 VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 138
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKASK 316
S+L AFS LE+++ + D +E+ L Q++Q G +VK K
Sbjct: 139 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPK 181
>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 178
Score = 105 bits (263), Expect = 5e-23, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
+QHG + L +F + ++ L L YR+ + P T + P H D+D + V GQ + +
Sbjct: 17 NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL 76
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
+ + R++Y + +GD I++ +G FY+ N D+++ L I+KF + PG E F+ + +
Sbjct: 77 VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 136
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVK 313
S+L AFS LE+++ + D +E+ L Q++Q G +VK
Sbjct: 137 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVK 176
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
FNL + P +SNN+G+L+E L DLDI ++ +++GA+ P YNSR+T + V
Sbjct: 9 FNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVA 68
Query: 402 VAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461
G +E+ + Q + ++ + ++P+ PV
Sbjct: 69 NEGRAEVELVGLEQQQQQGLESMQ-----------LRRYAATLSEGDIIVIPSSFPVALK 117
Query: 462 ASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQ 520
A+ ++L +V +NAE N R LAG + + + + + +L F +EVE + NQ +
Sbjct: 118 AA--SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKE 175
Query: 521 DWFFKGPSR 529
+F G R
Sbjct: 176 SYFVDGQPR 184
>pdb|1DGR|X Chain X, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|V Chain V, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|N Chain N, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|X Chain X, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 79
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
FNL + P +SNN+G+L+E L DLDI ++ +++GA+ P YNSR+T + V
Sbjct: 4 FNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVA 63
Query: 402 VAGDGYIEI 410
G +E+
Sbjct: 64 NEGRAEVEL 72
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
G + A S DF L L ++ + ++ K AM P YN + + + G I++
Sbjct: 320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV---- 375
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
+ ER G ++ IVP VV SQ++N E V F+
Sbjct: 376 -NCNGERVFDG----------------ELQEGRVLIVPQNF-VVAARSQSDNFEYVSFKT 417
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGN 517
N I LAG N + + E + FN ++ + ++ N
Sbjct: 418 NDTPMIGT-LAGANSLLNALPEEVIQHTFNLKSQQARQIKNN 458
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 223 YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA----FYGAGGENPE- 277
YN + GD+I VP+G +++ N ++D + V I + +L Q + FY AG + E
Sbjct: 115 YNFREGDLIAVPTGVAWWMYN-NEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEF 173
Query: 278 --------------------------SFLRAFSWEILESAFKTKRDSLERVLFQ---QDQ 308
S L F+ E LE AF + + + + +D+
Sbjct: 174 LKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDK 233
Query: 309 GAMV 312
GA+V
Sbjct: 234 GAIV 237
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
G + A S DF L L ++ + ++ K AM P YN + + + G I++
Sbjct: 320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV---- 375
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
+ ER G ++ IVP VV SQ++N E V F+
Sbjct: 376 -NCNGERVFDG----------------ELQEGRVLIVPQNF-VVAARSQSDNFEYVSFKT 417
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGN 517
N I LAG N + + E + FN ++ + ++ N
Sbjct: 418 NDTPMIGT-LAGANSLLNALPEEVIQHTFNLKSQQARQIKNN 458
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 223 YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA----FYGAGGENPE- 277
YN + GD+I VP+G +++ N ++D + V I + +L Q + FY AG + E
Sbjct: 115 YNFREGDLIAVPTGVAWWMYN-NEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEF 173
Query: 278 --------------------------SFLRAFSWEILESAFKTKRDSLERVLFQ---QDQ 308
S L F+ E LE AF + + + + +D+
Sbjct: 174 LKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDK 233
Query: 309 GAMV 312
GA+V
Sbjct: 234 GAIV 237
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
G + A S DF L L ++ + ++ K AM P YN + + + G I++
Sbjct: 320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV---- 375
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
+ ER G ++ IVP VV SQ++N E V F+
Sbjct: 376 -NCNGERVFDG----------------ELQEGRVLIVPQNF-VVAARSQSDNFEYVSFKT 417
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGN 517
N I LAG N + + E + FN ++ + ++ N
Sbjct: 418 NDTPMIGT-LAGANSLLNALPEEVIQHTFNLKSQQARQIKNN 458
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 223 YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA----FYGAGGENPE- 277
YN + GD+I VP+G +++ N ++D + V I + +L Q + FY AG + E
Sbjct: 115 YNFREGDLIAVPTGVAWWMYN-NEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEF 173
Query: 278 --------------------------SFLRAFSWEILESAFKTKRDSLERVLFQ---QDQ 308
S L F+ E LE AF + + + + +D+
Sbjct: 174 LKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDK 233
Query: 309 GAMV 312
GA+V
Sbjct: 234 GAIV 237
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 129/328 (39%), Gaps = 56/328 (17%)
Query: 216 RENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE----AFYGA 271
R+ +++ +++ GD I G + N D ++ L IV + + Q + FY A
Sbjct: 140 RDMHQKVEHIRTGDTIATHPGVAQWFYN-DGNQPLVIVSVLDLASHQNQLDRNPRPFYLA 198
Query: 272 GGENPE--------------SFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASK 316
G NP+ + L F+ E+L AFK + +++ QQD +G +++
Sbjct: 199 G-NNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQG 257
Query: 317 --QQIRALSRSQ----EGPSIWPFAGESRGTFNLFGKRPSHSN----NFGELFEADSNDF 366
IR RSQ E + +R T NL PS+++ G + +S D
Sbjct: 258 PFSVIRPPLRSQRPQEEVNGLEETICSARCTDNL--DDPSNADVYKPQLGYISTLNSYDL 315
Query: 367 RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG 426
L L ++ +I + AM P +N+ + V V G+ ++++ + R + QG
Sbjct: 316 PILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQG 375
Query: 427 SSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLA 486
+P G VV A+ + + F+ NA I LA
Sbjct: 376 ---------------------QLLSIPQGFSVVKRAT-SEQFRWIEFKTNANAQIN-TLA 412
Query: 487 GRNKIFKVMESEAKELAFNTRADEVERV 514
GR + + + E + +E RV
Sbjct: 413 GRTSVLRGLPLEVISNGYQISLEEARRV 440
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 46/231 (19%)
Query: 224 NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA-----FYGAG------ 272
+++ GDI +P+G + + N + D+ L V I + N Q + FY AG
Sbjct: 133 HLREGDIFAMPAGVSHWAYN-NGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEH 191
Query: 273 -GE------------NPESFLRAFSWEILESAFKTKRDSLERVLFQQ-DQGAMVKASK-- 316
GE N + R F +L +F + +++ +Q D+G +V+ +
Sbjct: 192 SGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGL 251
Query: 317 QQIRALSRSQE-------GPSIWPFAGE-----SRGTFNLFGKRPSHSNNF----GELFE 360
I+ SR+ E G P E +R N+ PS ++ + G L
Sbjct: 252 HVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARLAVNV--DDPSKADVYTPEAGRLTT 309
Query: 361 ADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIA 411
+S + L L ++ + + + AM AP YN + + V G G I+I
Sbjct: 310 VNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIV 360
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 28/183 (15%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
G L A+ + L L ++ Y N+ + A+ P YN+ + + + G ++++ +
Sbjct: 354 GSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNG 413
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
+R E +G +VP V SQ++N E V F+
Sbjct: 414 NRVYDEELQEG---------------------HVLVVPQNF-AVAGKSQSDNFEYVAFKT 451
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQ 535
++ +I LAG N + + E ++ ++ R N + FF PS QQ
Sbjct: 452 DSRPSIAN-LAGENSVIDNLPEEVVANSYGLPREQA-RQLKNNNPFKFFVPPS----QQS 505
Query: 536 GRA 538
RA
Sbjct: 506 PRA 508
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAF---YGAGGENPESFLR 281
GD+I VP+G F++ N D D + V + N Q + F + G + + FLR
Sbjct: 133 GDLIAVPTGVAFWLYN-DHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQEFLR 188
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 35/151 (23%)
Query: 188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDD 247
P+TF P + QG R+ +++ + GDII VP+G F++ N D
Sbjct: 87 PETFEEPQESE----------QGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDT 136
Query: 248 EKLYI-VKFIKSIN--LPGQYEAFYGAGGENPE-------------------SFLRAFSW 285
+ + + I+S N L FY AG E + F
Sbjct: 137 PVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKR 196
Query: 286 EILESAFKTKRDSLERVLFQ---QDQGAMVK 313
+ LE AF R ++R+ + +++GA+VK
Sbjct: 197 DFLEDAFNVNRHIVDRLQGRNEDEEKGAIVK 227
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 38/181 (20%)
Query: 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI---ACPHVSRSSSERRHQGSSTR 430
+ +S A + + A+ P+Y S + + + G+GY + CP E QG R
Sbjct: 46 VALSRATLQRNALRRPYY-SNAPQEIFIQQGNGYFGMVFPGCPETFEEPQES-EQGEGRR 103
Query: 431 EEGSATYHKVSSRIRTDSAYIVPAG----------HPVVTVA-----SQNNNLEVVCFEI 475
H+ +R R VP G PV+ V+ S NN L+ +
Sbjct: 104 YR---DRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRF 160
Query: 476 NAEGN-------IRFPLAGR-------NKIFKVMESEAKELAFNTRADEVERVFG-NQDQ 520
GN + G+ N IF + + E AFN V+R+ G N+D+
Sbjct: 161 YLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDE 220
Query: 521 D 521
+
Sbjct: 221 E 221
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 35/115 (30%)
Query: 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE----AFYGAGG---ENPE--- 277
GD++ +P G ++ NT DE + + + + N Q + FY AG E+PE
Sbjct: 119 GDVLVIPPGVPYWTYNT-GDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ 177
Query: 278 ------------------------SFLRAFSWEILESAFKTKRDSLERVLFQQDQ 308
S L FS L +F T D+ E++ D+
Sbjct: 178 QQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDE 232
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 343 NLFGKRPSHS-NNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
NL P H + G L E ++ L+ +TVS +++ + P Y S ++ +V
Sbjct: 12 NLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIV 70
Query: 402 VAGDGYIEIA---CPHV-SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP 457
V G G I A CP + + +GS ++++ ++ K+ D ++P G P
Sbjct: 71 VQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGD-VLVIPPGVP 129
Query: 458 VVT 460
T
Sbjct: 130 YWT 132
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 35/115 (30%)
Query: 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE----AFYGAGG---ENPE--- 277
GD++ +P G ++ NT DE + + + + N Q + FY AG E+PE
Sbjct: 120 GDVLVIPPGVPYWTYNT-GDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ 178
Query: 278 ------------------------SFLRAFSWEILESAFKTKRDSLERVLFQQDQ 308
S L FS L +F T D+ E++ D+
Sbjct: 179 QQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDE 233
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 343 NLFGKRPSHS-NNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
NL P H + G L E ++ L+ +TVS +++ + P Y S ++ +V
Sbjct: 13 NLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIV 71
Query: 402 VAGDGYIEIA---CPHV-SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP 457
V G G I A CP + + +GS ++++ ++ K+ D ++P G P
Sbjct: 72 VQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGD-VLVIPPGVP 130
Query: 458 VVT 460
T
Sbjct: 131 YWT 133
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 285 WEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE 337
W+ + + ++ +RD L + QQ+ A ++A + +IRA ++ E W GE
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQ---WALLGE 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,221,864
Number of Sequences: 62578
Number of extensions: 547628
Number of successful extensions: 1788
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 41
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)