Query 040805
Match_columns 540
No_of_seqs 280 out of 1801
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 2.1E-70 4.6E-75 588.2 36.5 347 151-528 56-479 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 2.6E-43 5.7E-48 370.7 34.8 314 155-518 48-363 (367)
3 PLN00212 glutelin; Provisional 99.9 4.2E-26 9.1E-31 246.1 18.4 180 343-526 48-259 (493)
4 PF00190 Cupin_1: Cupin; Inte 99.9 2.6E-26 5.7E-31 211.9 14.5 139 342-511 1-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 7.6E-22 1.6E-26 182.6 17.3 142 348-511 4-145 (146)
6 PF00190 Cupin_1: Cupin; Inte 99.9 1.1E-21 2.3E-26 181.2 14.7 131 148-299 5-143 (144)
7 TIGR03404 bicupin_oxalic bicup 99.8 6.3E-19 1.4E-23 186.2 17.6 154 339-526 37-192 (367)
8 smart00835 Cupin_1 Cupin. This 99.8 5.3E-18 1.1E-22 156.9 16.2 137 152-299 6-145 (146)
9 COG2140 Thermophilic glucose-6 99.7 6.3E-17 1.4E-21 156.0 11.8 192 284-514 2-196 (209)
10 TIGR03214 ura-cupin putative a 99.6 9.1E-13 2E-17 133.5 24.5 194 177-474 56-252 (260)
11 PRK11171 hypothetical protein; 99.5 3E-12 6.4E-17 130.2 24.4 194 179-476 61-259 (266)
12 PF04702 Vicilin_N: Vicilin N 99.3 1.1E-11 2.3E-16 112.1 9.0 81 25-127 6-88 (147)
13 COG2140 Thermophilic glucose-6 99.3 1.7E-11 3.6E-16 118.6 10.1 127 157-302 66-196 (209)
14 COG0662 {ManC} Mannose-6-phosp 99.2 8.3E-11 1.8E-15 106.7 11.3 80 177-261 34-114 (127)
15 PF04702 Vicilin_N: Vicilin N 99.1 1.7E-10 3.6E-15 104.4 9.0 78 26-132 53-132 (147)
16 PF07883 Cupin_2: Cupin domain 99.1 3E-10 6.6E-15 91.2 8.8 69 183-256 2-71 (71)
17 TIGR02272 gentisate_1_2 gentis 99.1 9.3E-09 2E-13 107.4 19.8 233 178-473 80-319 (335)
18 PRK13290 ectC L-ectoine syntha 98.9 8.2E-09 1.8E-13 93.6 10.7 76 178-259 34-110 (125)
19 PRK04190 glucose-6-phosphate i 98.9 1.7E-08 3.7E-13 97.8 13.2 85 367-473 61-153 (191)
20 PRK04190 glucose-6-phosphate i 98.9 1E-08 2.2E-13 99.3 11.5 78 178-256 67-154 (191)
21 TIGR03214 ura-cupin putative a 98.9 7.8E-09 1.7E-13 104.9 11.1 78 178-261 178-256 (260)
22 COG1917 Uncharacterized conser 98.9 7.2E-09 1.6E-13 94.0 9.8 77 176-257 40-117 (131)
23 COG3837 Uncharacterized conser 98.9 9.2E-09 2E-13 95.1 8.7 79 175-258 38-120 (161)
24 PF07883 Cupin_2: Cupin domain 98.8 3.4E-08 7.4E-13 79.2 9.0 69 378-473 2-70 (71)
25 COG3435 Gentisate 1,2-dioxygen 98.7 9.9E-08 2.2E-12 96.4 12.5 255 152-473 64-331 (351)
26 COG0662 {ManC} Mannose-6-phosp 98.6 2.6E-07 5.6E-12 83.9 11.1 79 372-477 34-112 (127)
27 PF01050 MannoseP_isomer: Mann 98.6 5.1E-07 1.1E-11 84.5 11.2 87 155-256 49-136 (151)
28 PRK09943 DNA-binding transcrip 98.6 3.5E-07 7.6E-12 88.0 10.5 70 183-257 111-181 (185)
29 PRK11171 hypothetical protein; 98.6 3.6E-07 7.8E-12 93.1 10.9 77 179-261 184-261 (266)
30 TIGR01479 GMP_PMI mannose-1-ph 98.5 4.9E-07 1.1E-11 99.2 11.4 76 177-257 374-450 (468)
31 COG1917 Uncharacterized conser 98.5 7E-07 1.5E-11 80.9 10.3 77 370-473 39-115 (131)
32 PRK15460 cpsB mannose-1-phosph 98.5 7.3E-07 1.6E-11 97.8 11.4 77 178-259 384-461 (478)
33 PRK13290 ectC L-ectoine syntha 98.5 1.6E-06 3.6E-11 78.6 11.4 76 372-475 33-108 (125)
34 COG3837 Uncharacterized conser 98.4 1.5E-06 3.3E-11 80.6 9.1 80 373-479 41-123 (161)
35 PF02041 Auxin_BP: Auxin bindi 98.4 2.9E-06 6.2E-11 78.0 10.3 85 172-256 37-126 (167)
36 COG4101 Predicted mannose-6-ph 98.4 1.8E-06 3.9E-11 76.4 8.6 79 175-256 42-122 (142)
37 PRK09943 DNA-binding transcrip 98.2 4.6E-05 9.9E-10 73.3 15.9 76 373-475 106-181 (185)
38 PF11699 CENP-C_C: Mif2/CENP-C 98.2 1.1E-05 2.3E-10 68.5 9.3 71 178-253 11-82 (85)
39 PF03079 ARD: ARD/ARD' family; 98.2 8.7E-06 1.9E-10 76.7 9.6 65 191-256 84-149 (157)
40 PF01050 MannoseP_isomer: Mann 98.2 2.7E-05 5.7E-10 73.0 12.5 90 353-476 49-138 (151)
41 PF06560 GPI: Glucose-6-phosph 98.1 1.7E-05 3.7E-10 76.3 10.8 78 178-256 49-144 (182)
42 TIGR01479 GMP_PMI mannose-1-ph 98.1 1.6E-05 3.4E-10 87.4 11.5 88 354-475 363-450 (468)
43 PF06560 GPI: Glucose-6-phosph 98.1 3E-05 6.4E-10 74.7 11.0 89 367-473 43-143 (182)
44 PRK15457 ethanolamine utilizat 98.1 2.6E-05 5.7E-10 77.1 10.4 76 176-260 154-229 (233)
45 COG3257 GlxB Uncharacterized p 98.1 0.00048 1E-08 67.3 18.7 185 183-473 65-254 (264)
46 PRK13264 3-hydroxyanthranilate 98.0 1.5E-05 3.2E-10 76.1 7.8 59 187-245 42-100 (177)
47 COG4297 Uncharacterized protei 98.0 1.3E-05 2.8E-10 72.7 6.8 60 389-473 58-117 (163)
48 PF02311 AraC_binding: AraC-li 98.0 3.3E-05 7.2E-10 68.1 9.1 67 188-259 12-78 (136)
49 TIGR03037 anthran_nbaC 3-hydro 98.0 2.2E-05 4.7E-10 73.8 8.0 59 187-245 36-94 (159)
50 PRK15460 cpsB mannose-1-phosph 98.0 3.6E-05 7.8E-10 84.6 11.0 78 373-477 384-461 (478)
51 COG4101 Predicted mannose-6-ph 97.9 7.6E-05 1.7E-09 66.3 9.4 77 373-473 45-121 (142)
52 COG1791 Uncharacterized conser 97.9 6.1E-05 1.3E-09 70.9 9.0 64 192-256 88-152 (181)
53 PF05899 Cupin_3: Protein of u 97.8 8.5E-05 1.8E-09 61.2 7.3 59 178-241 6-64 (74)
54 PF03079 ARD: ARD/ARD' family; 97.6 0.00037 8.1E-09 65.7 10.0 70 385-477 83-152 (157)
55 PRK10371 DNA-binding transcrip 97.5 0.00023 5E-09 73.7 8.0 65 177-245 24-88 (302)
56 PF06249 EutQ: Ethanolamine ut 97.5 0.00049 1.1E-08 64.4 8.7 75 177-260 75-149 (152)
57 PRK13264 3-hydroxyanthranilate 97.5 0.00043 9.2E-09 66.2 8.4 66 382-473 42-107 (177)
58 PF02311 AraC_binding: AraC-li 97.4 0.0012 2.7E-08 57.9 10.0 63 383-473 12-74 (136)
59 PRK10296 DNA-binding transcrip 97.4 0.00059 1.3E-08 69.2 8.9 52 190-245 34-85 (278)
60 TIGR02451 anti_sig_ChrR anti-s 97.3 0.00051 1.1E-08 68.1 7.2 71 178-257 126-196 (215)
61 PF11699 CENP-C_C: Mif2/CENP-C 97.3 0.0013 2.7E-08 55.9 8.5 72 373-471 11-82 (85)
62 PRK15457 ethanolamine utilizat 97.3 0.0019 4.1E-08 64.1 10.2 61 372-462 155-215 (233)
63 TIGR03037 anthran_nbaC 3-hydro 97.3 0.0016 3.4E-08 61.5 9.2 53 387-463 41-93 (159)
64 COG1791 Uncharacterized conser 97.3 0.0019 4.1E-08 61.0 9.7 68 387-477 88-155 (181)
65 PRK13500 transcriptional activ 97.3 0.00092 2E-08 69.5 8.5 56 186-245 55-110 (312)
66 PF06339 Ectoine_synth: Ectoin 97.2 0.0041 9E-08 56.1 11.3 76 179-259 35-110 (126)
67 PF12973 Cupin_7: ChrR Cupin-l 97.2 0.00092 2E-08 57.0 6.8 58 178-243 23-80 (91)
68 PF02041 Auxin_BP: Auxin bindi 97.2 0.0038 8.3E-08 57.8 10.3 98 366-486 38-136 (167)
69 PRK13501 transcriptional activ 97.1 0.0013 2.8E-08 67.3 8.1 55 187-245 26-80 (290)
70 COG4297 Uncharacterized protei 97.1 0.0012 2.6E-08 60.2 6.8 66 188-256 51-118 (163)
71 COG4766 EutQ Ethanolamine util 97.1 0.0034 7.3E-08 58.2 9.2 75 177-260 98-172 (176)
72 TIGR02272 gentisate_1_2 gentis 97.1 0.0016 3.5E-08 68.5 7.9 74 373-473 80-153 (335)
73 PRK13503 transcriptional activ 97.0 0.00097 2.1E-08 67.3 5.3 54 188-245 24-77 (278)
74 COG3450 Predicted enzyme of th 97.0 0.0026 5.7E-08 57.0 7.2 57 180-241 46-102 (116)
75 PF06052 3-HAO: 3-hydroxyanthr 97.0 0.0048 1E-07 57.3 9.0 62 185-246 39-100 (151)
76 PRK13502 transcriptional activ 96.8 0.0026 5.7E-08 64.5 7.0 56 186-245 25-80 (282)
77 PF05523 FdtA: WxcM-like, C-te 96.8 0.016 3.6E-07 53.0 11.5 99 151-256 9-110 (131)
78 TIGR02297 HpaA 4-hydroxyphenyl 96.8 0.0028 6E-08 64.4 6.9 53 189-245 33-86 (287)
79 PF06339 Ectoine_synth: Ectoin 96.8 0.014 3E-07 52.7 10.4 76 371-474 32-107 (126)
80 PF05523 FdtA: WxcM-like, C-te 96.8 0.018 4E-07 52.6 11.3 98 350-473 10-109 (131)
81 PF05899 Cupin_3: Protein of u 96.7 0.0057 1.2E-07 50.3 6.9 59 374-461 7-65 (74)
82 PRK13501 transcriptional activ 96.6 0.0063 1.4E-07 62.2 8.1 55 383-465 27-81 (290)
83 PF12973 Cupin_7: ChrR Cupin-l 96.5 0.0085 1.8E-07 51.0 6.9 59 373-463 23-81 (91)
84 PRK15131 mannose-6-phosphate i 96.5 0.076 1.6E-06 57.3 15.8 60 374-463 321-380 (389)
85 TIGR00218 manA mannose-6-phosp 96.4 0.1 2.3E-06 54.2 15.8 60 374-463 235-294 (302)
86 PRK10371 DNA-binding transcrip 96.4 0.01 2.2E-07 61.6 8.3 63 375-465 27-89 (302)
87 PRK10296 DNA-binding transcrip 96.4 0.017 3.7E-07 58.5 9.8 51 384-462 33-83 (278)
88 PRK13500 transcriptional activ 96.4 0.0083 1.8E-07 62.3 7.5 55 383-465 57-111 (312)
89 TIGR02297 HpaA 4-hydroxyphenyl 96.3 0.011 2.4E-07 60.0 7.7 64 383-473 32-95 (287)
90 TIGR02451 anti_sig_ChrR anti-s 96.3 0.015 3.2E-07 57.7 8.3 69 373-473 126-194 (215)
91 PF14499 DUF4437: Domain of un 96.2 0.0056 1.2E-07 61.9 4.9 206 175-470 35-240 (251)
92 PRK13502 transcriptional activ 96.2 0.017 3.7E-07 58.6 8.4 64 374-465 18-81 (282)
93 KOG2107 Uncharacterized conser 96.1 0.0094 2E-07 56.0 5.1 56 190-245 84-140 (179)
94 PRK10572 DNA-binding transcrip 96.0 0.029 6.4E-07 57.2 9.1 77 169-249 11-95 (290)
95 PF06249 EutQ: Ethanolamine ut 95.7 0.036 7.7E-07 52.1 7.4 61 373-463 76-136 (152)
96 PF14499 DUF4437: Domain of un 95.7 0.021 4.5E-07 57.9 6.1 72 373-471 35-106 (251)
97 PRK13503 transcriptional activ 95.7 0.027 5.8E-07 56.8 6.9 54 382-463 23-76 (278)
98 COG3435 Gentisate 1,2-dioxygen 95.6 0.035 7.6E-07 57.0 7.2 63 186-254 268-330 (351)
99 PF12852 Cupin_6: Cupin 95.5 0.03 6.6E-07 53.5 6.5 45 199-245 35-79 (186)
100 TIGR01221 rmlC dTDP-4-dehydror 95.4 0.2 4.4E-06 48.2 11.5 74 382-473 52-130 (176)
101 TIGR01015 hmgA homogentisate 1 95.4 0.27 5.8E-06 53.3 13.4 57 185-245 131-190 (429)
102 COG1482 ManA Phosphomannose is 95.4 0.8 1.7E-05 47.9 16.5 45 199-243 123-180 (312)
103 PF13621 Cupin_8: Cupin-like d 95.3 0.068 1.5E-06 52.6 8.4 91 376-467 132-236 (251)
104 PRK05341 homogentisate 1,2-dio 95.2 0.35 7.5E-06 52.5 13.8 55 185-243 137-194 (438)
105 PF08007 Cupin_4: Cupin superf 95.2 0.17 3.7E-06 53.1 11.2 93 375-473 114-209 (319)
106 COG1898 RfbC dTDP-4-dehydrorha 95.1 0.32 7E-06 46.7 11.8 79 373-473 48-130 (173)
107 PF00908 dTDP_sugar_isom: dTDP 95.0 0.21 4.6E-06 48.0 10.4 74 382-473 51-130 (176)
108 COG3450 Predicted enzyme of th 94.9 0.095 2.1E-06 47.1 7.0 59 374-461 45-103 (116)
109 PF13621 Cupin_8: Cupin-like d 94.8 0.13 2.9E-06 50.6 8.8 61 184-244 136-232 (251)
110 COG1741 Pirin-related protein 94.7 4.7 0.0001 41.7 19.9 68 185-255 50-121 (276)
111 KOG2107 Uncharacterized conser 94.2 0.085 1.8E-06 49.8 5.4 56 385-463 84-139 (179)
112 COG4766 EutQ Ethanolamine util 94.0 0.26 5.6E-06 46.0 8.1 62 373-464 99-160 (176)
113 PLN02288 mannose-6-phosphate i 94.0 0.87 1.9E-05 49.3 13.4 60 373-458 333-392 (394)
114 PF08007 Cupin_4: Cupin superf 93.4 0.3 6.4E-06 51.3 8.4 65 186-252 120-205 (319)
115 PF00908 dTDP_sugar_isom: dTDP 93.2 0.92 2E-05 43.7 10.8 92 151-246 15-123 (176)
116 TIGR01221 rmlC dTDP-4-dehydror 93.1 1.4 2.9E-05 42.6 11.7 62 185-246 50-123 (176)
117 PRK00924 5-keto-4-deoxyuronate 92.7 14 0.0003 38.2 19.2 59 191-253 65-125 (276)
118 PF05995 CDO_I: Cysteine dioxy 92.4 1.7 3.6E-05 41.7 11.4 81 178-258 74-164 (175)
119 PF04209 HgmA: homogentisate 1 92.2 0.56 1.2E-05 51.0 8.6 52 197-255 144-195 (424)
120 PF04209 HgmA: homogentisate 1 91.9 0.58 1.3E-05 50.9 8.2 79 364-473 116-195 (424)
121 PF05118 Asp_Arg_Hydrox: Aspar 91.8 0.79 1.7E-05 43.4 8.3 72 178-256 79-157 (163)
122 PF02373 JmjC: JmjC domain, hy 91.7 0.18 3.9E-06 43.8 3.5 25 222-246 82-106 (114)
123 KOG2757 Mannose-6-phosphate is 91.7 0.74 1.6E-05 48.7 8.4 72 177-253 331-402 (411)
124 COG3257 GlxB Uncharacterized p 91.6 1.2 2.6E-05 44.2 9.2 71 376-473 63-134 (264)
125 PF06052 3-HAO: 3-hydroxyanthr 90.9 1.3 2.9E-05 41.4 8.4 61 379-463 38-98 (151)
126 KOG2757 Mannose-6-phosphate is 90.8 1.7 3.7E-05 46.1 10.0 67 373-468 332-399 (411)
127 PRK15131 mannose-6-phosphate i 90.8 1 2.3E-05 48.6 8.9 59 178-242 320-378 (389)
128 PF13759 2OG-FeII_Oxy_5: Putat 90.7 1.7 3.7E-05 37.4 8.6 92 379-474 5-101 (101)
129 PF12852 Cupin_6: Cupin 90.5 0.95 2.1E-05 43.2 7.5 44 395-463 35-78 (186)
130 TIGR02466 conserved hypothetic 90.4 1.1 2.4E-05 44.1 8.0 94 378-475 100-198 (201)
131 KOG3706 Uncharacterized conser 90.3 0.18 3.8E-06 54.9 2.4 57 187-243 325-403 (629)
132 COG1898 RfbC dTDP-4-dehydrorha 89.9 3.4 7.3E-05 39.8 10.6 61 187-247 53-124 (173)
133 PF14861 Antimicrobial21: Plan 89.9 0.38 8.3E-06 33.1 2.9 27 30-58 4-30 (31)
134 PRK05341 homogentisate 1,2-dio 88.8 2.3 4.9E-05 46.4 9.4 62 373-462 132-194 (438)
135 PLN02288 mannose-6-phosphate i 88.5 0.99 2.1E-05 48.9 6.5 62 176-239 331-392 (394)
136 PRK09685 DNA-binding transcrip 87.9 2.4 5.2E-05 43.3 8.7 63 179-245 45-113 (302)
137 TIGR01015 hmgA homogentisate 1 87.9 2.7 5.7E-05 45.8 9.2 63 373-463 126-189 (429)
138 PLN02658 homogentisate 1,2-dio 87.9 2.7 5.9E-05 45.8 9.3 67 366-461 119-186 (435)
139 PF05726 Pirin_C: Pirin C-term 87.7 1.4 2.9E-05 38.5 5.8 62 184-253 4-66 (104)
140 PLN02658 homogentisate 1,2-dio 87.4 1.8 4E-05 47.1 7.7 55 185-243 130-187 (435)
141 PF11142 DUF2917: Protein of u 86.5 2.4 5.1E-05 33.9 6.1 57 184-243 2-58 (63)
142 KOG3995 3-hydroxyanthranilate 85.3 1.6 3.4E-05 43.0 5.3 49 197-245 51-99 (279)
143 TIGR00218 manA mannose-6-phosp 84.7 3.7 8E-05 42.7 8.2 61 177-243 233-293 (302)
144 COG3542 Uncharacterized conser 84.4 22 0.00047 33.4 12.0 82 184-272 49-141 (162)
145 COG2850 Uncharacterized conser 84.2 1.7 3.7E-05 46.2 5.4 97 366-473 113-212 (383)
146 PF06865 DUF1255: Protein of u 83.6 11 0.00024 32.7 9.2 66 183-256 27-93 (94)
147 KOG3706 Uncharacterized conser 83.2 0.89 1.9E-05 49.6 2.9 77 377-461 319-402 (629)
148 PRK10579 hypothetical protein; 82.6 9.3 0.0002 33.2 8.3 64 185-256 29-93 (94)
149 PF06172 Cupin_5: Cupin superf 82.6 19 0.00041 33.4 11.1 99 155-254 14-123 (139)
150 PF05118 Asp_Arg_Hydrox: Aspar 81.7 11 0.00025 35.5 9.5 80 374-476 80-160 (163)
151 PF05726 Pirin_C: Pirin C-term 81.4 9.9 0.00021 33.1 8.4 67 377-473 2-68 (104)
152 PF09313 DUF1971: Domain of un 80.9 16 0.00036 30.8 9.1 60 188-247 12-76 (82)
153 PF02678 Pirin: Pirin; InterP 80.9 6.9 0.00015 34.7 7.2 63 189-255 40-105 (107)
154 PF02373 JmjC: JmjC domain, hy 80.7 2.9 6.3E-05 36.1 4.8 27 439-465 80-106 (114)
155 PF00027 cNMP_binding: Cyclic 78.7 5.2 0.00011 32.2 5.5 47 185-231 3-51 (91)
156 PRK10572 DNA-binding transcrip 78.4 5.3 0.00012 40.6 6.6 44 393-463 47-90 (290)
157 PF14525 AraC_binding_2: AraC- 76.3 19 0.00042 32.7 9.2 43 199-245 55-97 (172)
158 PF06172 Cupin_5: Cupin superf 75.9 46 0.001 30.8 11.4 81 373-472 40-123 (139)
159 PF04962 KduI: KduI/IolB famil 75.3 14 0.00031 37.8 8.7 68 175-245 23-98 (261)
160 COG3508 HmgA Homogentisate 1,2 73.2 22 0.00047 37.9 9.3 65 371-463 122-187 (427)
161 COG3718 IolB Uncharacterized e 72.5 44 0.00096 33.8 10.8 88 152-245 8-101 (270)
162 COG2850 Uncharacterized conser 72.5 3.4 7.4E-05 44.0 3.4 59 185-245 125-203 (383)
163 PF13759 2OG-FeII_Oxy_5: Putat 70.9 11 0.00023 32.5 5.6 61 185-245 6-90 (101)
164 PF04962 KduI: KduI/IolB famil 70.4 41 0.00089 34.5 10.6 75 177-256 149-243 (261)
165 PRK10579 hypothetical protein; 69.9 48 0.001 28.8 9.2 68 376-473 25-92 (94)
166 PF06865 DUF1255: Protein of u 69.7 44 0.00096 29.0 9.0 70 374-473 23-92 (94)
167 PRK09685 DNA-binding transcrip 69.0 11 0.00024 38.4 6.2 66 373-465 44-114 (302)
168 COG3508 HmgA Homogentisate 1,2 68.5 18 0.00038 38.6 7.5 50 198-253 145-194 (427)
169 PF06719 AraC_N: AraC-type tra 67.4 47 0.001 30.9 9.6 74 173-256 3-78 (155)
170 PRK09391 fixK transcriptional 66.7 31 0.00067 34.0 8.7 57 181-237 38-96 (230)
171 PRK13918 CRP/FNR family transc 66.7 16 0.00035 34.7 6.5 51 184-234 9-63 (202)
172 PRK09391 fixK transcriptional 65.1 52 0.0011 32.3 10.0 128 372-523 34-209 (230)
173 PF14861 Antimicrobial21: Plan 63.4 7.2 0.00016 27.0 2.4 24 98-122 6-29 (31)
174 COG5553 Predicted metal-depend 63.0 27 0.00059 33.3 6.9 68 176-248 73-148 (191)
175 PF05995 CDO_I: Cysteine dioxy 62.6 65 0.0014 30.8 9.8 89 373-477 74-163 (175)
176 PF07385 DUF1498: Protein of u 60.9 39 0.00085 33.8 7.9 83 178-263 86-193 (225)
177 PF04773 FecR: FecR protein; 60.9 92 0.002 25.8 9.5 57 185-242 22-80 (98)
178 PRK11753 DNA-binding transcrip 60.8 50 0.0011 31.4 8.8 51 183-233 22-74 (211)
179 PF05962 HutD: HutD; InterPro 60.8 95 0.0021 30.0 10.6 99 152-256 10-108 (184)
180 COG1482 ManA Phosphomannose is 59.9 29 0.00063 36.5 7.3 40 198-241 259-298 (312)
181 PRK11396 hypothetical protein; 58.9 99 0.0022 30.3 10.3 88 152-246 13-100 (191)
182 PF14525 AraC_binding_2: AraC- 58.0 55 0.0012 29.7 8.2 23 442-464 75-97 (172)
183 PRK10402 DNA-binding transcrip 57.7 23 0.0005 34.7 5.9 50 185-234 35-86 (226)
184 PF00166 Cpn10: Chaperonin 10 57.5 33 0.00072 29.4 6.1 25 439-463 53-77 (93)
185 PF07172 GRP: Glycine rich pro 57.4 7.7 0.00017 33.7 2.2 11 1-11 1-11 (95)
186 PRK12335 tellurite resistance 57.1 39 0.00084 34.6 7.7 70 383-474 20-92 (287)
187 PRK11753 DNA-binding transcrip 56.5 92 0.002 29.6 9.8 74 376-473 20-99 (211)
188 PF09313 DUF1971: Domain of un 55.4 1.2E+02 0.0026 25.6 8.9 66 383-470 12-79 (82)
189 COG3822 ABC-type sugar transpo 55.1 84 0.0018 30.9 8.9 37 223-262 155-191 (225)
190 cd00038 CAP_ED effector domain 54.7 31 0.00067 28.2 5.5 52 182-233 18-71 (115)
191 smart00100 cNMP Cyclic nucleot 54.5 42 0.00091 27.5 6.3 51 184-234 20-72 (120)
192 COG1741 Pirin-related protein 52.3 35 0.00076 35.3 6.3 68 378-471 48-119 (276)
193 PRK13918 CRP/FNR family transc 52.2 96 0.0021 29.3 9.1 73 378-473 8-85 (202)
194 PF07847 DUF1637: Protein of u 51.9 58 0.0013 32.1 7.5 83 177-261 42-146 (200)
195 PRK09774 fec operon regulator 49.9 87 0.0019 32.8 9.0 83 149-246 107-191 (319)
196 PF02678 Pirin: Pirin; InterP 46.9 67 0.0015 28.4 6.5 62 384-471 39-103 (107)
197 TIGR02466 conserved hypothetic 46.4 79 0.0017 31.1 7.5 61 185-245 102-186 (201)
198 PHA02984 hypothetical protein; 46.2 81 0.0018 32.5 7.6 62 199-262 91-154 (286)
199 PF00027 cNMP_binding: Cyclic 45.9 64 0.0014 25.6 5.9 50 380-451 3-52 (91)
200 KOG2131 Uncharacterized conser 45.5 28 0.00062 37.2 4.4 71 175-247 195-294 (427)
201 PF11142 DUF2917: Protein of u 44.7 1E+02 0.0022 24.6 6.5 56 380-462 3-58 (63)
202 PHA02951 Hypothetical protein; 44.6 53 0.0012 34.3 6.1 55 383-461 114-168 (337)
203 PF10669 Phage_Gp23: Protein g 43.8 70 0.0015 27.9 5.8 9 46-54 42-50 (121)
204 PRK11396 hypothetical protein; 43.1 3.3E+02 0.0071 26.8 11.1 83 351-462 14-97 (191)
205 PRK15186 AraC family transcrip 41.8 75 0.0016 33.0 6.9 47 198-247 37-83 (291)
206 PF04202 Mfp-3: Foot protein 3 41.4 19 0.00042 29.1 1.9 20 3-22 2-21 (71)
207 PRK10402 DNA-binding transcrip 39.8 2.2E+02 0.0047 27.7 9.7 74 377-474 32-110 (226)
208 PRK00364 groES co-chaperonin G 39.8 1.1E+02 0.0024 26.4 6.6 32 439-471 54-85 (95)
209 COG3495 Uncharacterized protei 36.4 25 0.00054 32.8 2.1 29 4-33 3-31 (166)
210 cd00038 CAP_ED effector domain 35.7 2.3E+02 0.0051 22.8 8.3 56 376-453 17-72 (115)
211 PF07847 DUF1637: Protein of u 35.5 1.4E+02 0.0029 29.6 7.2 46 369-414 39-84 (200)
212 KOG1356 Putative transcription 35.1 14 0.0003 43.3 0.3 57 185-245 761-823 (889)
213 KOG4063 Major epididymal secre 33.8 31 0.00067 32.5 2.3 30 4-35 2-32 (158)
214 COG3123 Uncharacterized protei 33.6 1.5E+02 0.0032 25.4 6.0 54 185-243 29-83 (94)
215 PRK09392 ftrB transcriptional 33.6 70 0.0015 31.2 5.0 49 184-232 33-82 (236)
216 PF00166 Cpn10: Chaperonin 10 33.4 96 0.0021 26.5 5.2 64 186-253 19-84 (93)
217 PF15279 SOBP: Sine oculis-bin 33.4 24 0.00051 37.1 1.6 33 31-63 3-39 (306)
218 cd00320 cpn10 Chaperonin 10 Kd 33.3 1.3E+02 0.0028 25.8 5.9 31 440-471 54-84 (93)
219 KOG2130 Phosphatidylserine-spe 33.1 58 0.0013 34.4 4.4 27 437-463 260-286 (407)
220 PRK12335 tellurite resistance 32.9 1.7E+02 0.0036 30.0 7.8 61 187-247 19-84 (287)
221 KOG1417 Homogentisate 1,2-diox 32.5 3.9E+02 0.0085 28.1 10.1 78 358-464 119-197 (446)
222 PF03511 Fanconi_A: Fanconi an 32.5 59 0.0013 26.1 3.3 32 4-35 3-38 (64)
223 COG0664 Crp cAMP-binding prote 32.3 1.1E+02 0.0023 28.5 5.9 53 183-235 25-79 (214)
224 COG3718 IolB Uncharacterized e 32.2 3.5E+02 0.0076 27.6 9.4 99 352-473 10-109 (270)
225 COG0490 Putative regulatory, l 32.0 45 0.00097 31.8 3.1 62 164-233 73-143 (162)
226 PHA02890 hypothetical protein; 31.3 2.1E+02 0.0046 29.3 7.8 57 397-477 94-150 (278)
227 PHA02890 hypothetical protein; 31.2 1.8E+02 0.0039 29.9 7.3 60 199-262 90-151 (278)
228 TIGR03697 NtcA_cyano global ni 30.6 98 0.0021 28.9 5.3 36 198-233 10-47 (193)
229 PRK11161 fumarate/nitrate redu 30.5 1.1E+02 0.0024 29.8 5.8 50 185-234 41-92 (235)
230 PF01987 AIM24: Mitochondrial 30.5 75 0.0016 31.0 4.6 45 199-243 129-173 (215)
231 PLN02868 acyl-CoA thioesterase 30.2 1.2E+02 0.0025 32.9 6.5 51 183-233 33-84 (413)
232 KOG3995 3-hydroxyanthranilate 28.4 71 0.0015 31.8 3.9 44 395-461 53-96 (279)
233 COG3806 ChrR Transcriptional a 28.0 2.7E+02 0.0059 27.6 7.7 56 178-241 127-182 (216)
234 PF13464 DUF4115: Domain of un 27.9 3.3E+02 0.0071 22.0 7.7 52 400-473 3-54 (77)
235 smart00100 cNMP Cyclic nucleot 26.1 3.2E+02 0.0069 22.0 7.2 56 377-454 18-73 (120)
236 PF05962 HutD: HutD; InterPro 25.5 1.3E+02 0.0028 29.0 5.2 38 198-239 134-171 (184)
237 COG0234 GroS Co-chaperonin Gro 25.2 2.2E+02 0.0047 25.0 5.8 64 186-253 20-85 (96)
238 TIGR03697 NtcA_cyano global ni 24.6 1.4E+02 0.0031 27.7 5.3 39 394-453 10-48 (193)
239 PHA02984 hypothetical protein; 23.9 3.1E+02 0.0067 28.4 7.6 58 396-477 94-153 (286)
240 PRK11161 fumarate/nitrate redu 23.5 3E+02 0.0065 26.7 7.5 53 379-453 40-92 (235)
241 KOG3416 Predicted nucleic acid 22.9 1.4E+02 0.0029 27.5 4.3 67 172-243 10-80 (134)
242 PLN03207 stomagen; Provisional 22.5 91 0.002 27.3 3.0 9 3-11 9-17 (113)
243 PF10731 Anophelin: Thrombin i 21.7 99 0.0021 24.7 2.8 17 1-17 1-17 (65)
244 PF02796 HTH_7: Helix-turn-hel 21.5 1.1E+02 0.0023 22.4 2.9 25 281-305 20-44 (45)
245 PRK00924 5-keto-4-deoxyuronate 21.4 3.4E+02 0.0073 28.2 7.4 68 178-245 174-249 (276)
246 PF15069 FAM163: FAM163 family 21.1 87 0.0019 29.3 2.8 8 58-65 32-39 (143)
247 PF10313 DUF2415: Uncharacteri 20.7 1E+02 0.0022 22.9 2.6 31 384-414 1-33 (43)
248 PRK00364 groES co-chaperonin G 20.6 3.3E+02 0.0071 23.5 6.2 63 187-253 21-85 (95)
249 PF12729 4HB_MCP_1: Four helix 20.3 55 0.0012 29.5 1.4 22 1-22 4-25 (181)
250 cd06919 Asp_decarbox Aspartate 20.2 56 0.0012 29.2 1.3 37 199-235 52-88 (111)
251 PF11256 DUF3055: Protein of u 20.1 1.8E+02 0.0038 24.7 4.2 21 495-515 55-75 (81)
252 COG3542 Uncharacterized conser 20.0 7.6E+02 0.016 23.5 11.5 63 375-458 45-111 (162)
No 1
>PLN00212 glutelin; Provisional
Probab=100.00 E-value=2.1e-70 Score=588.18 Aligned_cols=347 Identities=18% Similarity=0.336 Sum_probs=301.2
Q ss_pred ceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE-----
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY----- 223 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~----- 223 (540)
.+|++|+|.++.| |+++++|+ |++.+|+ +|+|+|+++|||++|++++||++|+|++|+|.|||+++|
T Consensus 56 ~ri~se~G~~E~~---~~~~~q~~caGv~~~R~---~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~ 129 (493)
T PLN00212 56 RKVRSEAGVTEYF---DEKNEQFQCTGVFVIRR---VIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQ 129 (493)
T ss_pred hhhcccCceeeec---CCCChhhcccceEEEEE---EecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcc
Confidence 4889999999885 78899999 9998888 999999999999999999999999999999999988774
Q ss_pred ---------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCC---
Q 040805 224 ---------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGEN--- 275 (540)
Q Consensus 224 ---------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~--- 275 (540)
+|++||||+||||++||++|+| ++++++|++++++|. +..++.|||||+.+
T Consensus 130 ~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~G-d~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~ 208 (493)
T PLN00212 130 QFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDG-DAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQ 208 (493)
T ss_pred cccccccccccccccccccceEeccCCEEEECCCCeEEEEeCC-CCcEEEEEEEeccccccccCCCcceeeccCCCcccc
Confidence 8999999999999999999998 568999999988774 22457999999975
Q ss_pred -----------cccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCC----------------
Q 040805 276 -----------PESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQE---------------- 327 (540)
Q Consensus 276 -----------~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~---------------- 327 (540)
+.|||+||++++|++||||+.+++++|+++++ .|.||+++. .++.++|..+
T Consensus 209 ~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~-~l~~~~P~~~~~~e~~~~~~~~~~~~ 287 (493)
T PLN00212 209 QVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKN-GLQLLQPTLTQQQEQAQQQQQRLYQQ 287 (493)
T ss_pred ccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECC-CcccCCCchhhhhHHHHhhhhccccc
Confidence 35799999999999999999999999998875 599999975 4554444320
Q ss_pred ------CCCcCC-CCCCCC-ceeEcC------CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccC
Q 040805 328 ------GPSIWP-FAGESR-GTFNLF------GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNS 393 (540)
Q Consensus 328 ------~~s~~~-~~~~~~-~~fnL~------~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~ 393 (540)
..+.|. .+..++ -+++|. +..|+|++.+|+++++++.+||+|+.++|++.+++|.||||++||||+
T Consensus 288 ~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~ 367 (493)
T PLN00212 288 VQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNV 367 (493)
T ss_pred chhhhccccccCCCCccccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecC
Confidence 000011 111111 144444 346689999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
||++|+||++|+|+++||++++. ++|+.+|++|||||||+||+|++.|+ ++++.|++|
T Consensus 368 nA~eI~yV~rG~g~vqvV~~~g~---------------------~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~F 425 (493)
T PLN00212 368 NAHSVVYITQGRARVQVVSNNGK---------------------TVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIAF 425 (493)
T ss_pred CCCEEEEEeecceEEEEEcCCCC---------------------EEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEEe
Confidence 99999999999999999998763 68999999999999999999999887 678999999
Q ss_pred EecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 474 EINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 474 ~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
++++ ++..++|||++|+|++||.+||++||+++.++|++|+.++++++|+.+|.
T Consensus 426 ~tna-~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e~~~~~p~ 479 (493)
T PLN00212 426 KTNA-NAMVSHIAGKNSIFRALPVDVIANAYRISREEARRLKNNRGDELGAFTPR 479 (493)
T ss_pred ecCC-CccccccccHHHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCceeecCCC
Confidence 9998 67899999999999999999999999999999999999987776666664
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=100.00 E-value=2.6e-43 Score=370.70 Aligned_cols=314 Identities=12% Similarity=0.142 Sum_probs=251.5
Q ss_pred cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEE
Q 040805 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRV 233 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~i 233 (540)
..+|+++.++ ..+.|.|.+++.+++ ++.||++..||||.+.||+||++|++++++++++ ..+.+.|++||+|+|
T Consensus 48 ~~gG~~~~~~--~~~lP~l~~ls~~~~---~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 48 ENGGWAREVT--VRDLPISTAIAGVNM---RLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYF 122 (367)
T ss_pred ccCceEEEeC--hhhccCcccccceEE---EEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEE
Confidence 3799999984 333455555555555 9999999999999999999999999999999864 445568999999999
Q ss_pred CCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEE
Q 040805 234 PSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVK 313 (540)
Q Consensus 234 PaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~ 313 (540)
|+|.+|++.|.+ +.+.++.+|++..... ...+.+ .++|+++|++||+++|+++.+++++|++.+ -+|+.
T Consensus 123 P~g~~H~~~n~~--~~~~~l~vf~~~~f~~-~~~~~~------~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~--~~~~~ 191 (367)
T TIGR03404 123 PPGIPHSLQGLD--EGCEFLLVFDDGNFSE-DGTFLV------TDWLAHTPKDVLAKNFGVPESAFDNLPLKE--LYIFP 191 (367)
T ss_pred CCCCeEEEEECC--CCeEEEEEeCCcccCC-cceeeH------HHHHHhCCHHHHHHHhCCCHHHHHhccccC--ceEEe
Confidence 999999999985 3578888887655322 123343 268888999999999999999999999776 48886
Q ss_pred cc-chhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccccc
Q 040805 314 AS-KQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYN 392 (540)
Q Consensus 314 ~~-~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h 392 (540)
+. +..+..-... + ........+.|++.+..| +...+|+++.+++.+||+++ +++++.++|.||+|+.||||
T Consensus 192 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H 263 (367)
T TIGR03404 192 GTVPGPLDQEAVT----G-PAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWH 263 (367)
T ss_pred cCCCCccccccCc----C-CCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeC
Confidence 62 2222111110 1 111223346789999999 67889999999999999988 59999999999999999999
Q ss_pred CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805 393 SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 393 ~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
++++||.||++|+++++|+++++. .....|++||+++||+|++|++.|.|+++++|++
T Consensus 264 ~~~~E~~yvl~G~~~~~v~d~~g~----------------------~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~ 321 (367)
T TIGR03404 264 PNADEWQYFIQGQARMTVFAAGGN----------------------ARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLE 321 (367)
T ss_pred cCCCeEEEEEEEEEEEEEEecCCc----------------------EEEEEECCCCEEEECCCCeEEEEECCCCCEEEEE
Confidence 999999999999999999998762 2335799999999999999999999999999998
Q ss_pred EEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCC
Q 040805 473 FEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQ 518 (540)
Q Consensus 473 F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q 518 (540)
+..+. .+...-| +++|+.+|++||+++|+++.+.+++|++.+
T Consensus 322 if~s~-~~~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~ 363 (367)
T TIGR03404 322 VFKAD-RFADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKEK 363 (367)
T ss_pred EECCC-CCceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence 75444 3333334 588999999999999999999999998764
No 3
>PLN00212 glutelin; Provisional
Probab=99.94 E-value=4.2e-26 Score=246.11 Aligned_cols=180 Identities=17% Similarity=0.233 Sum_probs=141.2
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS-- 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~-- 418 (540)
+|....| .+.+++|.+..|| .+.++|+|+|+++.+++|.|+||++|||| ||++|+||++|+|++++|.|+|+.-
T Consensus 48 ~l~a~ep~~ri~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~ 125 (493)
T PLN00212 48 RLQAFEPLRKVRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQ 125 (493)
T ss_pred ccccCCCchhhcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhh
Confidence 3444455 5788999888888 66899999999999999999999999997 9999999999999999999988631
Q ss_pred cccc---cccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecCC------CCcccccccc
Q 040805 419 SSER---RHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINAE------GNIRFPLAGR 488 (540)
Q Consensus 419 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a~------~~~~~~LAG~ 488 (540)
+.+. ...+++.++.. +..+++ .+|++||||+||+|++||++|+|++++++|+ +++++. ++..|||||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~-d~hqkv-~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~ 203 (493)
T PLN00212 126 QQFQQFLTEGQSQSQKFR-DEHQKI-HQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGN 203 (493)
T ss_pred hhcccccccccccccccc-cccccc-eEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCC
Confidence 1100 00001111122 233555 6999999999999999999999999987765 666653 2358999996
Q ss_pred -----------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCCC-ceEEcC
Q 040805 489 -----------------NKIFKVMESEAKELAFNTRADEVERVFGNQDQ-DWFFKG 526 (540)
Q Consensus 489 -----------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~e-~~f~~~ 526 (540)
.|||++|++++|+.||||+.+++++|+..++. ..|+.-
T Consensus 204 ~~~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv 259 (493)
T PLN00212 204 NNRQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRV 259 (493)
T ss_pred CccccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEE
Confidence 36999999999999999999999999977643 566654
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.94 E-value=2.6e-26 Score=211.92 Aligned_cols=139 Identities=31% Similarity=0.524 Sum_probs=115.4
Q ss_pred eEcCCCCCcccCCCceEEEecCCCCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcc
Q 040805 342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS 420 (540)
Q Consensus 342 fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~ 420 (540)
|||.+.+|+|++++|+++.+++.++|+|..+ ++++.++.|+||||++|||| +|++|+||++|+|+++||+|++++.
T Consensus 1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~-- 77 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQE-- 77 (144)
T ss_dssp EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSS--
T ss_pred CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccc--
Confidence 7999999999999999999999999965554 66677778899999999999 9999999999999999999987410
Q ss_pred cccccCCCccccCCccceEEee--eeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCCccccccccccccccCCH
Q 040805 421 ERRHQGSSTREEGSATYHKVSS--RIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGNIRFPLAGRNKIFKVMES 497 (540)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~--~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~ 497 (540)
..+.+.. +|++|||++||+|++||++|++ ++.+.+++|++++..+. +|+
T Consensus 78 ---------------~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-------------l~~ 129 (144)
T PF00190_consen 78 ---------------EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-------------LPP 129 (144)
T ss_dssp ---------------EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-------------SSH
T ss_pred ---------------cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-------------CCc
Confidence 0123333 5999999999999999999998 56677888988864332 899
Q ss_pred HHHHHHcCCCHHHH
Q 040805 498 EAKELAFNTRADEV 511 (540)
Q Consensus 498 evla~AF~vs~e~v 511 (540)
+|++++|+++.+++
T Consensus 130 ~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 130 EVLAKAFFLSGEEV 143 (144)
T ss_dssp HHHHHHEESSHHHH
T ss_pred HHHHHhcCCCcCcC
Confidence 99999999999875
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.88 E-value=7.6e-22 Score=182.62 Aligned_cols=142 Identities=38% Similarity=0.634 Sum_probs=129.6
Q ss_pred CCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCC
Q 040805 348 RPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGS 427 (540)
Q Consensus 348 ~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~ 427 (540)
+|.|+|++|++..+++.++|.+++.++.+..++|.||++..||||+++.++.||++|++.+.+.++.+.
T Consensus 4 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~----------- 72 (146)
T smart00835 4 RPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGN----------- 72 (146)
T ss_pred cccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCC-----------
Confidence 457899999999999999999999999999999999999999999999999999999999999887542
Q ss_pred CccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCC
Q 040805 428 STREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTR 507 (540)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs 507 (540)
++....|++||+++||+|.+|++.|.+++++.+++|.+++ .+.+++++|.+++|.+|+++|++.+|+++
T Consensus 73 ----------~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (146)
T smart00835 73 ----------KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTND-PNRRFFLAGRNSVLRGLPPEVLAAAFGVS 141 (146)
T ss_pred ----------eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCC-CCceeEeecccchhhcCCHHHHHHHhCcC
Confidence 4556789999999999999999999888999999987765 56788899989999999999999999999
Q ss_pred HHHH
Q 040805 508 ADEV 511 (540)
Q Consensus 508 ~e~v 511 (540)
++++
T Consensus 142 ~~~~ 145 (146)
T smart00835 142 AEEV 145 (146)
T ss_pred hHHc
Confidence 9875
No 6
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.87 E-value=1.1e-21 Score=181.20 Aligned_cols=131 Identities=24% Similarity=0.409 Sum_probs=104.8
Q ss_pred cccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCC------ce
Q 040805 148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN------RE 221 (540)
Q Consensus 148 ~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~------~~ 221 (540)
....+|++++|+++.|+.. +.|.+.++..+++.++.|+||++++||||+|++|+||++|+|++++|.+++ ..
T Consensus 5 ~~~~~~~~~~G~~~~~~~~--~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~ 82 (144)
T PF00190_consen 5 EPRPRVSNEGGRIREADSE--DFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDF 82 (144)
T ss_dssp SSSEEEEETTEEEEEESTT--TSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred CCCCcccCCCEEEEEEChh--hCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceee
Confidence 4567999999999999643 336566777788888899999999999999999999999999999999986 24
Q ss_pred EEe--eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805 222 SYN--VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL 299 (540)
Q Consensus 222 ~~~--l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v 299 (540)
..+ |++||||+||+|++||++|++++ +...+.++++.+.+ +. +|++||+++|+++.+++
T Consensus 83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~~~-~~~~~~~f~~~~~~---------------~~---l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 83 SQKVRLKAGDVFVVPAGHPHWIINDGDD-EALVLIIFDTNNPP---------------NQ---LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEETTEEEEE-TT-EEEEEECSSS-SEEEEEEEEESSTT---------------GE---SSHHHHHHHEESSHHHH
T ss_pred eceeeeecccceeeccceeEEEEcCCCC-CCEEEEEEECCCCc---------------cc---CCcHHHHHhcCCCcCcC
Confidence 455 99999999999999999999844 45555566444322 11 89999999999998864
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.81 E-value=6.3e-19 Score=186.15 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=125.6
Q ss_pred CceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805 339 RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS 418 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~ 418 (540)
..+|++..+++. .+|++++++..+||+|+. |++.+++|.|||++.|||| .+.||+||++|++++++++.++
T Consensus 37 ~~~~~~~~~~~~---~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g--- 107 (367)
T TIGR03404 37 KWSFSDSHNRLE---NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENG--- 107 (367)
T ss_pred eeeeccccCccc---cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCC---
Confidence 357877777753 789999999999999985 8999999999999999999 5679999999999999998765
Q ss_pred cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecC-CCCccccccccccccccCC
Q 040805 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINA-EGNIRFPLAGRNKIFKVME 496 (540)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a-~~~~~~~LAG~~svl~~~~ 496 (540)
+.+...|++||+++||+|.+|++.|.+ ++.+++. |+... ..+..+.+ +++|+.+|
T Consensus 108 -------------------~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~---~~~l~~~p 164 (367)
T TIGR03404 108 -------------------RNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLV---TDWLAHTP 164 (367)
T ss_pred -------------------cEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeH---HHHHHhCC
Confidence 456568999999999999999999984 5667655 53321 01112222 46787899
Q ss_pred HHHHHHHcCCCHHHHHHhhcCCCCceEEcC
Q 040805 497 SEAKELAFNTRADEVERVFGNQDQDWFFKG 526 (540)
Q Consensus 497 ~evla~AF~vs~e~v~kl~~~q~e~~f~~~ 526 (540)
.+||+++|+++.+++++|++ ++.+|+++
T Consensus 165 ~~Vla~~f~l~~~~~~~l~~--~~~~~~~~ 192 (367)
T TIGR03404 165 KDVLAKNFGVPESAFDNLPL--KELYIFPG 192 (367)
T ss_pred HHHHHHHhCCCHHHHHhccc--cCceEEec
Confidence 99999999999999999986 45788866
No 8
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.78 E-value=5.3e-18 Score=156.95 Aligned_cols=137 Identities=26% Similarity=0.432 Sum_probs=113.3
Q ss_pred eeecCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCC--ceEEeeCCC
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENN--RESYNVKRG 228 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~--~~~~~l~~G 228 (540)
.|++++|.+++|...+ .|.+++. .+.+..+++.||+...|||| ++++++||++|++.+.+..+++ ..++.+++|
T Consensus 6 ~~~~~~g~~~~~~~~~--~~~~~~~-~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~G 82 (146)
T smart00835 6 DFSNEGGRLREADPTN--FPALNGL-GISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREG 82 (146)
T ss_pred cccCCCceEEEeCchh--CcccccC-ceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCC
Confidence 5899999999996432 3677643 46677779999999999997 5899999999999999877643 347899999
Q ss_pred cEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805 229 DIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL 299 (540)
Q Consensus 229 Dv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v 299 (540)
|+++||+|+.||+.|.+ +++++++++. +++|. ..||++|.. ++|++|+++||+++|+++.+++
T Consensus 83 D~~~ip~g~~H~~~n~~-~~~~~~l~~~--~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 83 DVFVVPQGHPHFQVNSG-DENLEFVAFN--TNDPN--RRFFLAGRN---SVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CEEEECCCCEEEEEcCC-CCCEEEEEEe--cCCCC--ceeEeeccc---chhhcCCHHHHHHHhCcChHHc
Confidence 99999999999999987 5789998643 34443 468888864 8999999999999999999875
No 9
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.71 E-value=6.3e-17 Score=155.95 Aligned_cols=192 Identities=15% Similarity=0.122 Sum_probs=144.1
Q ss_pred CHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC-CCCCceeEcCCCCCcccCCCceEEEec
Q 040805 284 SWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA-GESRGTFNLFGKRPSHSNNFGELFEAD 362 (540)
Q Consensus 284 ~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~-~~~~~~fnL~~~~P~~~n~~G~~~~~~ 362 (540)
+..++.+.|+++.+++..+..++. +|.+.+..+ .+....++.+ ... .+....|.|....|..+ +|.+....
T Consensus 2 ~~~~~~~~~~vd~~~~~~~p~~~~--~i~~~~~~~--~l~~d~~~~~--~~~~~~~~~~yel~~~~~~~~--~g~L~~~~ 73 (209)
T COG2140 2 PKLFEPKNFGVDVRTGKLLPLKQV--YIKRGSDPG--GLYADEDAYS--MLRKKEDDFVYELLESEPGER--GGDLRLDV 73 (209)
T ss_pred CceeccccccchhhhhhcCCccce--eEEeccCCc--ccccCHHHHH--HhcCCCCceEEEeeccccccc--CCeEEEEe
Confidence 466788999999999888877763 676654321 2211110101 111 23456889999999775 99999888
Q ss_pred CCCCCCCccccceEEEEEEcCCCcccccccCCCcE--EEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEE
Q 040805 363 SNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTK--VAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKV 440 (540)
Q Consensus 363 ~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~e--i~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (540)
...+|.- +.+.+.++||+|++.||||+|++ |.||++|+|.+.|..+++ +..
T Consensus 74 t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G----------------------~~~ 126 (209)
T COG2140 74 TRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG----------------------EAR 126 (209)
T ss_pred eccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC----------------------cEE
Confidence 8888864 56778999999999999999999 999999999999999986 355
Q ss_pred eeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHh
Q 040805 441 SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERV 514 (540)
Q Consensus 441 ~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl 514 (540)
..++++||+++||.++.|+++|+|+++|+|+...-++ .... +....++.+++..+++..|+.+....+.+
T Consensus 127 v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~-~~~~---y~~~~~~~~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 127 VIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD-AGQD---YDLIAWLGGMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred EEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC-CCce---eeeeehhccCCceeeccccccCcccccCc
Confidence 6799999999999999999999999999987643332 1222 22245667788999999998877655544
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.56 E-value=9.1e-13 Score=133.51 Aligned_cols=194 Identities=14% Similarity=0.173 Sum_probs=129.5
Q ss_pred ccceeeeeeeCCCccc-ccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 177 EKYRLGILIANPQTFV-TPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~-~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
..+-+-++++.||+-. .|+++ ..++++||++|++.+.+ +..++.|++||.+++|+|..|.+.|.+ +++++++.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~----~g~~~~L~~Gd~~y~pa~~~H~~~N~~-~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA----EGETHELREGGYAYLPPGSKWTLANAQ-AEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence 4455566799998754 34444 45899999999999887 567889999999999999999999987 56898887
Q ss_pred EeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC
Q 040805 255 FIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF 334 (540)
Q Consensus 255 i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~ 334 (540)
+-..... +.| + .....|| .+..+ +.+.
T Consensus 131 v~k~y~~--------~~g----------~----------------------~~~~~vv-g~~~d---v~~~--------- 157 (260)
T TIGR03214 131 YKKRYQP--------VEG----------L----------------------HAPELVV-GNEKD---IEPE--------- 157 (260)
T ss_pred EEeeeEE--------cCC----------C----------------------CCCCeee-cCHHH---CCcc---------
Confidence 6532211 111 0 0000111 11111 1110
Q ss_pred CCCCCceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC
Q 040805 335 AGESRGTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP 413 (540)
Q Consensus 335 ~~~~~~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p 413 (540)
| +....| .++.+-+.++ .. ++.+..++|.||+-...|.|-.-.+..||++|+|.+.+
T Consensus 158 --------------~-~~g~~~~~~~~llp~~~---~~-~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~--- 215 (260)
T TIGR03214 158 --------------P-YEGMDDVILTTLLPKEL---AF-DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL--- 215 (260)
T ss_pred --------------c-cCCCCcEEEEEeCchhc---CC-CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---
Confidence 0 111111 2323322222 22 57788899999999985433334467799999999964
Q ss_pred CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805 414 HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
++ +. ..|.+||+++||+|.+||+.|.|++++.+|-..
T Consensus 216 ~g----------------------~~--~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk 252 (260)
T TIGR03214 216 DN----------------------NW--VPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK 252 (260)
T ss_pred CC----------------------EE--EEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence 22 22 379999999999999999999999999998773
No 11
>PRK11171 hypothetical protein; Provisional
Probab=99.52 E-value=3e-12 Score=130.21 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=131.3
Q ss_pred ceeeeeeeCCCccccccc-c-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 179 YRLGILIANPQTFVTPTH-L-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~-~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+-+.++++.||+-...++ + ..++++||++|++.+.+ +..++.|++||.+++|++.+|.+.|.+ +++++++++.
T Consensus 61 ~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~----~g~~~~L~~GDsi~~p~~~~H~~~N~g-~~~a~~l~v~ 135 (266)
T PRK11171 61 FSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL----EGKTHALSEGGYAYLPPGSDWTLRNAG-AEDARFHWIR 135 (266)
T ss_pred EEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEEEE
Confidence 344556999998654444 3 46899999999999987 566899999999999999999999998 5689998876
Q ss_pred ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805 257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG 336 (540)
Q Consensus 257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~ 336 (540)
...... . ++. .+ ..||.-. .++. +.
T Consensus 136 ~~y~~~--------~----------~~~---------~p-------------~~~~~~~-~d~~---~~----------- 160 (266)
T PRK11171 136 KRYEPV--------E----------GHE---------AP-------------EAFVGNE-SDIE---PI----------- 160 (266)
T ss_pred cCCeEc--------C----------CCC---------CC-------------CeEecch-hccc---cc-----------
Confidence 322210 0 000 01 0122110 0110 00
Q ss_pred CCCceeEcCCCCCcccCCCc-eEE--EecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC
Q 040805 337 ESRGTFNLFGKRPSHSNNFG-ELF--EADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP 413 (540)
Q Consensus 337 ~~~~~fnL~~~~P~~~n~~G-~~~--~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p 413 (540)
+ +...-| .+. .+.+.+. ..++.+..++|.||+-...|-|....+.+||++|++.+.+
T Consensus 161 ------------~-~~g~~g~~~~~~~~~p~~~----~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--- 220 (266)
T PRK11171 161 ------------P-MPGTDGVWATTRLVDPEDL----RFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--- 220 (266)
T ss_pred ------------c-cCCCCCeEEEEEeeCchhc----CCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---
Confidence 0 111112 121 2222111 2246788999999999988534567799999999999974
Q ss_pred CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 414 HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
++ +. ..|.+||++.+|++.+|++.|.+++++.++.+..-
T Consensus 221 ~~----------------------~~--~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~ 259 (266)
T PRK11171 221 NN----------------------DW--VEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDV 259 (266)
T ss_pred CC----------------------EE--EEeCCCCEEEECCCCCEEEECCCCCcEEEEEEccc
Confidence 22 22 47999999999999999999999999999998433
No 12
>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO). In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].
Probab=99.29 E-value=1.1e-11 Score=112.05 Aligned_cols=81 Identities=38% Similarity=0.966 Sum_probs=61.4
Q ss_pred cCCch--hHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhccCCCCCCCCCCchHHHHHHHHHH
Q 040805 25 TKDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRE 102 (540)
Q Consensus 25 ~~dp~--~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~c~~~ 102 (540)
.+||. |.+|.++|.++.+ +.+++++|..+|+..|++++++++.+ ..|| .++|..|..+
T Consensus 6 ~~DPqq~y~qCq~rC~~q~~-g~r~q~qC~~RCE~q~~E~q~~~r~r------------------~~dP-qr~ye~Cqq~ 65 (147)
T PF04702_consen 6 PRDPQQQYEQCQRRCQRQER-GQRQQQQCQQRCEEQYEEEQRRQRGR------------------EEDP-QRRYEQCQQR 65 (147)
T ss_pred ccChHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhhhccCC------------------ccCH-HHHHHHHHHH
Confidence 47995 9999999999998 99999999999999999988776322 1356 6666666666
Q ss_pred HhhhcccchhhHHHHHHHHHHHHhh
Q 040805 103 CDRQEEGGQQRALCRFRCQEKYRRE 127 (540)
Q Consensus 103 c~~~~~~~~q~~~c~~rc~~~~~~~ 127 (540)
|+++.+ ++.++|.+||+.+|+++
T Consensus 66 Cqrq~~--r~~~~C~qrCe~qye~e 88 (147)
T PF04702_consen 66 CQRQEP--RQQQQCQQRCEEQYEKE 88 (147)
T ss_pred HHHhch--HHhHHHHHHHHHHHHHH
Confidence 666663 56666666666666644
No 13
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.27 E-value=1.7e-11 Score=118.62 Aligned_cols=127 Identities=19% Similarity=0.328 Sum_probs=99.6
Q ss_pred CceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCe--EEEEEeeEEEEEEEecC-CceEEeeCCCcEEE
Q 040805 157 HGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADA--VFFVSWGQGTITVIREN-NRESYNVKRGDIIR 232 (540)
Q Consensus 157 ~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~e--i~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~ 232 (540)
+|.++.- .++.++|. --+++.+.||++..-||| ++++ |+||++|+|.+.+-.++ ...+..+++||+++
T Consensus 66 ~g~L~~~-----~t~~~pGs---~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iy 137 (209)
T COG2140 66 GGDLRLD-----VTRIFPGS---AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIY 137 (209)
T ss_pred CCeEEEE-----eeccCCCc---cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEE
Confidence 8888884 24677875 245568999999999987 7887 99999999999998876 44688999999999
Q ss_pred ECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805 233 VPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV 302 (540)
Q Consensus 233 iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l 302 (540)
||+|..|++.|+| +++|+++.++. .+.. ..+.+ ..++.+.+.-+++..|+.+....+.+
T Consensus 138 VPp~~gH~t~N~G-d~pLvf~~v~~-~~~~---~~y~~------~~~~~~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 138 VPPGYGHYTINTG-DEPLVFLNVYP-ADAG---QDYDL------IAWLGGMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred eCCCcceEeecCC-CCCEEEEEEEe-CCCC---ceeee------eehhccCCceeeccccccCcccccCc
Confidence 9999999999999 57999999883 3322 22222 25777888888888887776555543
No 14
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=8.3e-11 Score=106.71 Aligned_cols=80 Identities=25% Similarity=0.460 Sum_probs=70.2
Q ss_pred ccceeeeeeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
..++++.+.++||+-. +++|++.+|++||++|+|.+.+ +...+.|++||+++||+|++|++.|+| +.+|.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~----~~~~~~v~~gd~~~iP~g~~H~~~N~G-~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI----GGEEVEVKAGDSVYIPAGTPHRVRNTG-KIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CcceEEEEE
Confidence 4678888899999875 6666679999999999999998 678899999999999999999999999 579999998
Q ss_pred eecCCC
Q 040805 256 IKSINL 261 (540)
Q Consensus 256 ~~~~~~ 261 (540)
..+.+.
T Consensus 109 ~~p~~~ 114 (127)
T COG0662 109 QSPPYL 114 (127)
T ss_pred ecCCcC
Confidence 866554
No 15
>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO). In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].
Probab=99.14 E-value=1.7e-10 Score=104.38 Aligned_cols=78 Identities=35% Similarity=0.922 Sum_probs=68.3
Q ss_pred CCch--hHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhccCCCCCCCCCCchHHHHHHHHHHH
Q 040805 26 KDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQREC 103 (540)
Q Consensus 26 ~dp~--~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~c~~~c 103 (540)
.||. |+.|...|+.+. .+++.+|.++|+..|.+.+++ | .++|..|+++|
T Consensus 53 ~dPqr~ye~Cqq~Cqrq~---~r~~~~C~qrCe~qye~eq~~-------------------------p-qkqy~eCqr~C 103 (147)
T PF04702_consen 53 EDPQRRYEQCQQRCQRQE---PRQQQQCQQRCEEQYEKEQQQ-------------------------P-QKQYEECQRRC 103 (147)
T ss_pred cCHHHHHHHHHHHHHHhc---hHHhHHHHHHHHHHHHHHHhh-------------------------H-HHHHHHHHHHH
Confidence 5894 999999999986 588999999999999886433 3 89999999999
Q ss_pred hhhcccchhhHHHHHHHHHHHHhhhccCC
Q 040805 104 DRQEEGGQQRALCRFRCQEKYRREKEGEG 132 (540)
Q Consensus 104 ~~~~~~~~q~~~c~~rc~~~~~~~~~~~~ 132 (540)
+.+.-+.+.+.+|+.||+++|++++++++
T Consensus 104 e~QeQ~~r~qqQCq~rC~eqy~E~~~r~e 132 (147)
T PF04702_consen 104 EEQEQGPRRQQQCQRRCEEQYQEQQGRGE 132 (147)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhhcccc
Confidence 99987779999999999999999885554
No 16
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.12 E-value=3e-10 Score=91.15 Aligned_cols=69 Identities=29% Similarity=0.484 Sum_probs=60.1
Q ss_pred eeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 183 ILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
++++.||+...+|+|... +++||++|++.+.+ +...+.|++||++++|+|..|.+.|.+ +++++++.|+
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV----DGERVELKPGDAIYIPPGVPHQVRNPG-DEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE----TTEEEEEETTEEEEEETTSEEEEEEES-SSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE----ccEEeEccCCEEEEECCCCeEEEEECC-CCCEEEEEEC
Confidence 568899998778877666 99999999998885 455899999999999999999999998 5689998775
No 17
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.07 E-value=9.3e-09 Score=107.37 Aligned_cols=233 Identities=20% Similarity=0.280 Sum_probs=129.2
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.+...+-.|.||....||-|.+..|.||++|+|..++| +.+.+.+++||+|++|.++.|...|.+ +++++++.++|
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V---~g~~~~~~~gD~~~tP~w~wH~H~n~~-d~~~~wld~lD 155 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAV---DGERTTMHPGDFIITPSWTWHDHGNPG-DEPMIWLDGLD 155 (335)
T ss_pred hHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEE---CCEEEeeeCCCEEEeCCCeeEecccCC-CCcEEEEecCC
Confidence 34455567899999999999999999999999965665 446799999999999999999999987 56777765442
Q ss_pred cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCc---CCC
Q 040805 258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSI---WPF 334 (540)
Q Consensus 258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~---~~~ 334 (540)
.| .+ .++-+ +++-..+.+.-. .-.-+.+... .. .+.++.+.. .... ..+. |++
T Consensus 156 ---~P-l~-~~l~~------~f~e~~~~~~~~-~~~~~~~~~~-~~----g~~l~P~~~-----~~~~--~~sP~~~ypw 211 (335)
T TIGR02272 156 ---IP-LV-QLFDC------SFAEGYPEDQQP-VTRPEGDSLA-RY----GHNMLPVRH-----KRSD--RSSPIFNYPY 211 (335)
T ss_pred ---HH-HH-HhhCc------ceeccccccccc-cccCCcchhh-hc----ccCcccccc-----ccCC--CCCCceecCc
Confidence 12 01 00100 111111110000 0000000000 00 001111110 0000 0000 111
Q ss_pred CCCCCceeEcCC--CCCcccCCCc-eEEEecCCCCCC-CccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEE
Q 040805 335 AGESRGTFNLFG--KRPSHSNNFG-ELFEADSNDFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI 410 (540)
Q Consensus 335 ~~~~~~~fnL~~--~~P~~~n~~G-~~~~~~~~~~p~-L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~v 410 (540)
..... .|.. .........| .+..+|+.+-+- +.. |+.....|.+|....||=| .+..|.||++|+|++.|
T Consensus 212 ~~~~~---aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pt--i~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i 285 (335)
T TIGR02272 212 ERSRE---ALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPT--IGAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI 285 (335)
T ss_pred HHHHH---HHHHHHhccCCCCCceEEEEEeCCCCCCCcchh--HHHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE
Confidence 00000 0100 0001112234 456667655443 333 4444566777777777764 56689999999999987
Q ss_pred EcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 411 ACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 411 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
++ +++ +.++||+|+||..+.|...|+ ++..++.|
T Consensus 286 ---g~----------------------~~~--~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 286 ---GD----------------------AVF--RFSPKDVFVVPSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred ---CC----------------------EEE--EecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence 22 344 799999999999988876665 34544455
No 18
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.92 E-value=8.2e-09 Score=93.62 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=62.3
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEE-EEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT-VIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig-~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
++.+..++++||+....|+++..+++||++|++++. + ++.+++.|.+||++++|++.+|++.|+ +++++|+++
T Consensus 34 ~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i---~~g~~~~L~aGD~i~~~~~~~H~~~N~---e~~~~l~v~ 107 (125)
T PRK13290 34 GFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL---ATGEVHPIRPGTMYALDKHDRHYLRAG---EDMRLVCVF 107 (125)
T ss_pred CEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc---CCCEEEEeCCCeEEEECCCCcEEEEcC---CCEEEEEEE
Confidence 344555699999977667666578999999999888 4 225789999999999999999999996 479999998
Q ss_pred ecC
Q 040805 257 KSI 259 (540)
Q Consensus 257 ~~~ 259 (540)
.|.
T Consensus 108 tP~ 110 (125)
T PRK13290 108 NPP 110 (125)
T ss_pred CCC
Confidence 543
No 19
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.91 E-value=1.7e-08 Score=97.78 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=71.6
Q ss_pred CCCccccceEEEEEEcCCCc------ccccccCCCc--EEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce
Q 040805 367 RPLEDLDITVSYANISKGAM------AAPFYNSRST--KVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH 438 (540)
Q Consensus 367 p~L~~l~isv~~~~L~pggm------~~PH~h~~A~--ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (540)
|.++.-++.+..+.|.||.. ..+|||++++ ||.||++|+|.+.+-...+ .
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G----------------------~ 118 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEG----------------------E 118 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCC----------------------c
Confidence 34556689999999999995 6679998665 9999999999999876644 1
Q ss_pred EEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 439 KVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 439 ~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
.....+++||+++||+|+.|.++|.++++|++++.
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v 153 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLAC 153 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEE
Confidence 23357999999999999999999999999999875
No 20
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.90 E-value=1e-08 Score=99.32 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=66.1
Q ss_pred cceeeeeeeCCCcc------cccccc---CCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805 178 KYRLGILIANPQTF------VTPTHL---DADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 178 ~~rl~~~~l~Pggl------~~Ph~~---~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
.+++++.+|.||.+ ..+||| +.+|++||++|+|.+-+-+.. ....+.+++||+++||+|++|.+.|+| +
T Consensus 67 ~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G-~ 145 (191)
T PRK04190 67 DLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTG-D 145 (191)
T ss_pred ceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECC-C
Confidence 46788889999986 556887 345999999999998875443 345789999999999999999999998 6
Q ss_pred ccEEEEEEe
Q 040805 248 EKLYIVKFI 256 (540)
Q Consensus 248 e~l~~v~i~ 256 (540)
++|++++++
T Consensus 146 epl~fl~v~ 154 (191)
T PRK04190 146 EPLVFLACY 154 (191)
T ss_pred CCEEEEEEE
Confidence 799999988
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.90 E-value=7.8e-09 Score=104.94 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=67.0
Q ss_pred cceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
++.+++++++||+.... |||..++.+||++|+|++.+ +.+.+.|.+||+++||+|.+||++|+| +++|++| +.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~----~g~~~~V~~GD~i~i~~~~~h~~~~~G-~~~~~~l-~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL----DNNWVPVEAGDYIWMGAYCPQACYAGG-RGEFRYL-LY 251 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCCEEEEecC-CCcEEEE-EE
Confidence 56677799999999764 55678899999999999887 667899999999999999999999999 5799998 56
Q ss_pred ecCCC
Q 040805 257 KSINL 261 (540)
Q Consensus 257 ~~~~~ 261 (540)
++.|.
T Consensus 252 kd~nr 256 (260)
T TIGR03214 252 KDMNR 256 (260)
T ss_pred ccccC
Confidence 66775
No 22
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.90 E-value=7.2e-09 Score=93.98 Aligned_cols=77 Identities=18% Similarity=0.355 Sum_probs=65.9
Q ss_pred cccceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 176 LEKYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 176 i~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
-.++.+..++++||+....|.|+ .+..+||++|++++.+ ....+.+++||+++||+|++||+.|.++. ++.+|+
T Consensus 40 ~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~----~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~-~~~~l~ 114 (131)
T COG1917 40 GENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL----EGEKKELKAGDVIIIPPGVVHGLKAVEDE-PMVLLL 114 (131)
T ss_pred CceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe----cCCceEecCCCEEEECCCCeeeeccCCCC-ceeEEE
Confidence 35667778899999998888887 8899999999999998 36789999999999999999999998744 467777
Q ss_pred Eee
Q 040805 255 FIK 257 (540)
Q Consensus 255 i~~ 257 (540)
++.
T Consensus 115 v~~ 117 (131)
T COG1917 115 VFP 117 (131)
T ss_pred Eee
Confidence 763
No 23
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.85 E-value=9.2e-09 Score=95.09 Aligned_cols=79 Identities=20% Similarity=0.337 Sum_probs=68.1
Q ss_pred ccccceeeeeeeCCCccc-ccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccE
Q 040805 175 GLEKYRLGILIANPQTFV-TPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKL 250 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pggl~-~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l 250 (540)
|+..+.+.+..++||+.. ++||| .-+|++|||+|++++-+ +...+.|++||++.+||| +.|.++|++ +..+
T Consensus 38 Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~----d~~e~~lrpGD~~gFpAG~~~aHhliN~s-~~~~ 112 (161)
T COG3837 38 GLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE----DGGETRLRPGDSAGFPAGVGNAHHLINRS-DVIL 112 (161)
T ss_pred ChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE----CCeeEEecCCceeeccCCCcceeEEeecC-CceE
Confidence 888888999999999864 78887 56899999999997766 556789999999999999 999999998 5689
Q ss_pred EEEEEeec
Q 040805 251 YIVKFIKS 258 (540)
Q Consensus 251 ~~v~i~~~ 258 (540)
+++++-+.
T Consensus 113 ~yL~vG~r 120 (161)
T COG3837 113 RYLEVGTR 120 (161)
T ss_pred EEEEeccc
Confidence 99988743
No 24
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.79 E-value=3.4e-08 Score=79.16 Aligned_cols=69 Identities=13% Similarity=0.296 Sum_probs=60.3
Q ss_pred EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCe
Q 040805 378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP 457 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~ 457 (540)
+++|.||+...+|+|+..+++.||++|++.+. +.. +. ..|++||+++||+|.+
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~------------------------~~--~~l~~Gd~~~i~~~~~ 54 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG------------------------ER--VELKPGDAIYIPPGVP 54 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT------------------------EE--EEEETTEEEEEETTSE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc------------------------EE--eEccCCEEEEECCCCe
Confidence 57899999999999988889999999999998 432 22 4799999999999999
Q ss_pred EEEEecCCCCEEEEEE
Q 040805 458 VVTVASQNNNLEVVCF 473 (540)
Q Consensus 458 h~~~n~~~e~l~~v~F 473 (540)
|.+.|.+++++.++.+
T Consensus 55 H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 55 HQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEEESSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 9999998889888764
No 25
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=9.9e-08 Score=96.44 Aligned_cols=255 Identities=16% Similarity=0.186 Sum_probs=150.4
Q ss_pred eeecCCceEEEeccCccccccccccc----cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCC
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLE----KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKR 227 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~----~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~ 227 (540)
++..+.|.-|++ + -.+|-|+|-+ .+-.++=-|.||-..+.|-|+.+.+.||++|+|..++|+.. ...+++
T Consensus 64 li~~~~a~RRvi--~-L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGe---r~~M~~ 137 (351)
T COG3435 64 LISAREAVRRVI--Y-LENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGE---RTPMEA 137 (351)
T ss_pred ccCcccceeEEE--E-ecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecCc---eeeccC
Confidence 455666666666 2 3356677432 12234445789998777779999999999999999998643 467999
Q ss_pred CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCC
Q 040805 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQD 307 (540)
Q Consensus 228 GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~ 307 (540)
||.|..|+++-|.-.|.| ++|++++--+|- | +-.++-+ .+|.-++.+...-.-...
T Consensus 138 GDfilTP~w~wHdHgn~g-~eP~iWlDgLDi---p--lv~~l~~------gFfe~~~e~~q~v~~~~~------------ 193 (351)
T COG3435 138 GDFILTPAWTWHDHGNEG-TEPCIWLDGLDI---P--LVNSLGA------GFFEEHPEEQQPVTRPEG------------ 193 (351)
T ss_pred CCEEEccCceeccCCCCC-CCceEEEcccch---H--HHHhhcc------cccccCchhcCcccCCCC------------
Confidence 999999999999999997 689988754431 1 1111111 233333333322111111
Q ss_pred CCcEEEccchhhhccCCCCCC-CCc---CCCCCCCC---ceeEcCCCCCcccCCCceEEEecCCC--CCCCccccceEEE
Q 040805 308 QGAMVKASKQQIRALSRSQEG-PSI---WPFAGESR---GTFNLFGKRPSHSNNFGELFEADSND--FRPLEDLDITVSY 378 (540)
Q Consensus 308 ~g~Iv~~~~e~l~~l~~~~~~-~s~---~~~~~~~~---~~fnL~~~~P~~~n~~G~~~~~~~~~--~p~L~~l~isv~~ 378 (540)
..+-+... .++.++..... .|. +++..... .-..+....| + ++-.+..+|+.+ .+.- -|++.+
T Consensus 194 -d~~ar~~~-~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp-~--dG~~~ryvNP~TGg~~mp---tI~a~m 265 (351)
T COG3435 194 -DSLARYGP-GMRPLRHRWGKPYSPLFNYAWDRTREALERLARLEEPDP-F--DGYKMRYVNPVTGGYAMP---TIGAFM 265 (351)
T ss_pred -CchhhcCC-CccccccCCCCCCCcccccccccHHHHHHHHHhccCCCC-C--CcceEEEecCCCCCCcCc---hHHHHH
Confidence 12222111 22222111000 010 11100000 0011122333 1 223455555443 1211 366666
Q ss_pred EEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805 379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV 458 (540)
Q Consensus 379 ~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h 458 (540)
--|.||-..-||-|+++ .|.-|++|+|++.|=. ++| ..++||+||||.=+.|
T Consensus 266 qlL~~Gf~~~~~r~t~s-~iy~V~eGsg~~~Ig~-------------------------~rf--~~~~~D~fvVPsW~~~ 317 (351)
T COG3435 266 QLLPPGFHGKAHRHTDS-TIYHVVEGSGYTIIGG-------------------------ERF--DWSAGDIFVVPSWAWH 317 (351)
T ss_pred HhcCCcccCCceeccCC-EEEEEEecceeEEECC-------------------------EEe--eccCCCEEEccCccee
Confidence 77888888899988766 5788999999986522 344 6889999999999999
Q ss_pred EEEecCCCCEEEEEE
Q 040805 459 VTVASQNNNLEVVCF 473 (540)
Q Consensus 459 ~~~n~~~e~l~~v~F 473 (540)
-..|+ .++..+.||
T Consensus 318 ~~~~g-s~da~LFsf 331 (351)
T COG3435 318 EHVNG-SEDAVLFSF 331 (351)
T ss_pred ecccC-CcceEEEec
Confidence 98887 567777787
No 26
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=2.6e-07 Score=83.85 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=69.2
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
...++.++.+.||+-..+|.|...+++.||++|+|.+.+=. +. ..|++||+++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-------------------------~~--~~v~~gd~~~ 86 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-------------------------EE--VEVKAGDSVY 86 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-------------------------EE--EEecCCCEEE
Confidence 36889999999999999999999999999999999998541 22 3699999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEecC
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
||+|.+|.+.|.|+.+|.+++....+
T Consensus 87 iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 87 IPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred ECCCCcEEEEcCCCcceEEEEEecCC
Confidence 99999999999999999999875443
No 27
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.57 E-value=5.1e-07 Score=84.54 Aligned_cols=87 Identities=21% Similarity=0.352 Sum_probs=71.7
Q ss_pred cCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEE
Q 040805 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRV 233 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~i 233 (540)
-..|+.++|... ..|.+-.++++||..+..++| +.+|..+|++|.|.+.+ +...+.|.+||+++|
T Consensus 49 rpWG~~~~l~~~----------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~----~~~~~~~~~g~sv~I 114 (151)
T PF01050_consen 49 RPWGSYEVLDEG----------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL----DDEEFTLKEGDSVYI 114 (151)
T ss_pred cCCcEEEEEEcc----------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE----CCEEEEEcCCCEEEE
Confidence 356889998421 235555669999988777754 78999999999999998 677899999999999
Q ss_pred CCCCeEEEEeCCCCccEEEEEEe
Q 040805 234 PSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 234 PaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
|+|..|.+.|.| +.+|.+|-+-
T Consensus 115 p~g~~H~i~n~g-~~~L~~IEVq 136 (151)
T PF01050_consen 115 PRGAKHRIENPG-KTPLEIIEVQ 136 (151)
T ss_pred CCCCEEEEECCC-CcCcEEEEEe
Confidence 999999999998 5689998765
No 28
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.57 E-value=3.5e-07 Score=87.99 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred eeeeCCCcccc-ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 183 ILIANPQTFVT-PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 183 ~~~l~Pggl~~-Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+.++.||+... ++||...|++||++|++.+.+ +...+.|.+||.++||++++|.+.|.+ +++++++++..
T Consensus 111 ~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~~~~~~H~~~n~~-~~~~~~l~~~~ 181 (185)
T PRK09943 111 FETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI----NGQDYHLVAGQSYAINTGIPHSFSNTS-AGICRIISAHT 181 (185)
T ss_pred EEEccCCCCcccccccCCcEEEEEEEeEEEEEE----CCEEEEecCCCEEEEcCCCCeeeeCCC-CCCeEEEEEeC
Confidence 34789998654 455778999999999999887 557899999999999999999999987 56898888764
No 29
>PRK11171 hypothetical protein; Provisional
Probab=98.56 E-value=3.6e-07 Score=93.13 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=65.8
Q ss_pred ceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 179 YRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+-+.+++|+||+-... ||+...+.+||++|++.+.+ +...+.|.+||++++|++.+|++.|+| +++++++. ++
T Consensus 184 ~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~----~~~~~~l~~GD~i~~~~~~~h~~~N~g-~~~~~yl~-~k 257 (266)
T PRK11171 184 MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL----NNDWVEVEAGDFIWMRAYCPQACYAGG-PGPFRYLL-YK 257 (266)
T ss_pred cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEECCC-CCcEEEEE-Ec
Confidence 4566679999988766 46788999999999999987 678899999999999999999999998 57899884 55
Q ss_pred cCCC
Q 040805 258 SINL 261 (540)
Q Consensus 258 ~~~~ 261 (540)
+.|.
T Consensus 258 ~~nr 261 (266)
T PRK11171 258 DVNR 261 (266)
T ss_pred cccc
Confidence 6765
No 30
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.52 E-value=4.9e-07 Score=99.18 Aligned_cols=76 Identities=14% Similarity=0.285 Sum_probs=64.6
Q ss_pred ccceeeeeeeCCCcccccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFVTPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.++-+.+++++||+...+| |++.+|++||++|++++.+ +.+++.|++||.++||+|.+|.+.|++ ++++++|++
T Consensus 374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~----dg~~~~l~~GDsi~ip~~~~H~~~N~g-~~~~~~i~v 448 (468)
T TIGR01479 374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI----GDETLLLTENESTYIPLGVIHRLENPG-KIPLELIEV 448 (468)
T ss_pred CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence 3566777799999876555 4567788899999999987 567899999999999999999999998 579999998
Q ss_pred ee
Q 040805 256 IK 257 (540)
Q Consensus 256 ~~ 257 (540)
..
T Consensus 449 ~~ 450 (468)
T TIGR01479 449 QS 450 (468)
T ss_pred Ec
Confidence 74
No 31
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.51 E-value=7e-07 Score=80.93 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=64.6
Q ss_pred ccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805 370 EDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449 (540)
Q Consensus 370 ~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV 449 (540)
...++.+..+.+.||+-...|.||-...++||++|++++++-.+ . ..|++||+
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-------------------------~--~~l~~Gd~ 91 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-------------------------K--KELKAGDV 91 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-------------------------c--eEecCCCE
Confidence 45578899999999999999999877799999999999997622 1 36999999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEE
Q 040805 450 YIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 450 ~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
++||+|..|+..|.++..+.+|+.
T Consensus 92 i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 92 IIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred EEECCCCeeeeccCCCCceeEEEE
Confidence 999999999999987766454443
No 32
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.48 E-value=7.3e-07 Score=97.79 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=63.9
Q ss_pred cceeeeeeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+.+..+++.||+-. +|.|++.+|.+||++|++.+++ +.+++.|.+||.++||+|.+|.+.|+| +++|++|++.
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i----dg~~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V~ 458 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI----DGDIKLLGENESIYIPLGATHCLENPG-KIPLDLIEVR 458 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEEE
Confidence 344555699999754 3444566799999999999998 667899999999999999999999998 5799999987
Q ss_pred ecC
Q 040805 257 KSI 259 (540)
Q Consensus 257 ~~~ 259 (540)
.+.
T Consensus 459 ~g~ 461 (478)
T PRK15460 459 SGS 461 (478)
T ss_pred cCC
Confidence 544
No 33
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.47 E-value=1.6e-06 Score=78.63 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=62.7
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.++++.+++|.||+-...|+|.. .++.||++|++.+.++.. + +. ..|.+||+++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-g----------------------~~--~~L~aGD~i~ 86 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-G----------------------EV--HPIRPGTMYA 86 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-C----------------------EE--EEeCCCeEEE
Confidence 46789999999999888899865 589999999999985431 1 22 3799999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEe
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
+|++.+|.+.|. +++++++..+
T Consensus 87 ~~~~~~H~~~N~--e~~~~l~v~t 108 (125)
T PRK13290 87 LDKHDRHYLRAG--EDMRLVCVFN 108 (125)
T ss_pred ECCCCcEEEEcC--CCEEEEEEEC
Confidence 999999999997 6898887633
No 34
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.39 E-value=1.5e-06 Score=80.60 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=67.2
Q ss_pred cceEEEEEEcCCCcc-cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 373 DITVSYANISKGAMA-APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~pggm~-~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
++++....+.||+-. .+|||+.-.|++||++|++.+.+=. + ...|++||++-
T Consensus 41 ~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~--~-------------------------e~~lrpGD~~g 93 (161)
T COG3837 41 RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG--G-------------------------ETRLRPGDSAG 93 (161)
T ss_pred hcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC--e-------------------------eEEecCCceee
Confidence 578888999999985 7899999999999999999875311 1 13699999999
Q ss_pred ECCC--CeEEEEecCCCCEEEEEEEecCCC
Q 040805 452 VPAG--HPVVTVASQNNNLEVVCFEINAEG 479 (540)
Q Consensus 452 VPaG--~~h~~~n~~~e~l~~v~F~~~a~~ 479 (540)
+|+| .+|.++|.++..+.+++..+.+..
T Consensus 94 FpAG~~~aHhliN~s~~~~~yL~vG~r~~~ 123 (161)
T COG3837 94 FPAGVGNAHHLINRSDVILRYLEVGTREPD 123 (161)
T ss_pred ccCCCcceeEEeecCCceEEEEEecccccc
Confidence 9999 899999998889999998666533
No 35
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.37 E-value=2.9e-06 Score=78.01 Aligned_cols=85 Identities=20% Similarity=0.360 Sum_probs=54.9
Q ss_pred cccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEec-----CCceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805 172 LLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE-----NNRESYNVKRGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 172 ~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~-----~~~~~~~l~~GDv~~iPaG~~h~~~N~g~ 246 (540)
++-|+..+-+=+=++.||.-+++|-|..+|+++|++|+|++-+-.. |...++.+-+++.|.||.+.+|-+.|+++
T Consensus 37 ~~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e 116 (167)
T PF02041_consen 37 LLHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNE 116 (167)
T ss_dssp HHH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---S
T ss_pred hhcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCC
Confidence 4446666656566899999999999999999999999998887754 46678999999999999999999999997
Q ss_pred CccEEEEEEe
Q 040805 247 DEKLYIVKFI 256 (540)
Q Consensus 247 ~e~l~~v~i~ 256 (540)
.++|.++.+.
T Consensus 117 ~eDlqvlVii 126 (167)
T PF02041_consen 117 HEDLQVLVII 126 (167)
T ss_dssp SS-EEEEEEE
T ss_pred CcceEEEEEe
Confidence 7899998776
No 36
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=1.8e-06 Score=76.43 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=64.4
Q ss_pred ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEE
Q 040805 175 GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYI 252 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~ 252 (540)
|.+.+-+.+++|.||+-.--|+| .-+..+||++|++.+-+ .+.. +...+++||.|+||+|++|--+|.. ++++..
T Consensus 42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~--G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S-~ep~s~ 118 (142)
T COG4101 42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY--GNRLEEHAEVGPGDFFYIPPGVPHQPANLS-TEPLSA 118 (142)
T ss_pred ccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee--ccceeeeEEecCCCeEEcCCCCCCcccccC-CCCeEE
Confidence 67778888999999999877776 57788999999998766 1122 3568899999999999999999997 788887
Q ss_pred EEEe
Q 040805 253 VKFI 256 (540)
Q Consensus 253 v~i~ 256 (540)
+..-
T Consensus 119 vIaR 122 (142)
T COG4101 119 VIAR 122 (142)
T ss_pred EEEc
Confidence 6443
No 37
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.23 E-value=4.6e-05 Score=73.33 Aligned_cols=76 Identities=9% Similarity=0.223 Sum_probs=61.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+.+....+.||+-..+++|....|++||++|++.+.+- + +. ..|.+||.++|
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~---~----------------------~~--~~l~~Gd~~~~ 158 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTIN---G----------------------QD--YHLVAGQSYAI 158 (185)
T ss_pred eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEEC---C----------------------EE--EEecCCCEEEE
Confidence 456677789999976655555779999999999998752 2 23 37999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEe
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
|++.+|.+.|.+++++.++++.+
T Consensus 159 ~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 159 NTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred cCCCCeeeeCCCCCCeEEEEEeC
Confidence 99999999998888998888743
No 38
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.19 E-value=1.1e-05 Score=68.49 Aligned_cols=71 Identities=27% Similarity=0.474 Sum_probs=55.4
Q ss_pred cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
.+..++++|.|++.-.|..+ +..-++||++|...+++ ...++.+.+||+|.||+|-...+.|.+ +++++++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti----~~~~f~v~~G~~F~VP~gN~Y~i~N~~-~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI----HETSFVVTKGGSFQVPRGNYYSIKNIG-NEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE----TTEEEEEETT-EEEE-TT-EEEEEE-S-SS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE----cCcEEEEeCCCEEEECCCCEEEEEECC-CCcEEEE
Confidence 45677889999999888886 67788999999999999 667899999999999999999999998 4567664
No 39
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.18 E-value=8.7e-06 Score=76.69 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=50.9
Q ss_pred cccccccCCCeEEEEEeeEEEEEEEecCCceE-EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 191 FVTPTHLDADAVFFVSWGQGTITVIRENNRES-YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 191 l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~-~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+...|.|..+|+.||+.|+|.+.+...++... ..+++||+|+||+|+.||+.-+ .+..+.++-+|
T Consensus 84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~-~~~~i~aiRlF 149 (157)
T PF03079_consen 84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLG-ESPYIKAIRLF 149 (157)
T ss_dssp HCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEES-TTSSEEEEEEE
T ss_pred hheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcC-CCCcEEEEEee
Confidence 45788899999999999999999998877765 7899999999999999999765 45678888777
No 40
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.17 E-value=2.7e-05 Score=73.02 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=75.6
Q ss_pred CCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCcccc
Q 040805 353 NNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREE 432 (540)
Q Consensus 353 n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~ 432 (540)
...|+...++.. -++.+-++++.||..+..|+|..-++.-+|++|.|.+.+ ++
T Consensus 49 rpWG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~----------------- 101 (151)
T PF01050_consen 49 RPWGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD----------------- 101 (151)
T ss_pred cCCcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-----------------
Confidence 356777777632 257799999999999999999999999999999999985 22
Q ss_pred CCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 433 GSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 433 ~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
+. ..|.+||.+.||+|..|.+.|.++.+|+|+.+-+.
T Consensus 102 -----~~--~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G 138 (151)
T PF01050_consen 102 -----EE--FTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTG 138 (151)
T ss_pred -----EE--EEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecC
Confidence 22 36999999999999999999998999999987443
No 41
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.14 E-value=1.7e-05 Score=76.35 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=52.4
Q ss_pred cceeeeeeeCCCcc------cccccc-C------CCeEEEEEeeEEEEEEEecCC-----ceEEeeCCCcEEEECCCCeE
Q 040805 178 KYRLGILIANPQTF------VTPTHL-D------ADAVFFVSWGQGTITVIRENN-----RESYNVKRGDIIRVPSGNTF 239 (540)
Q Consensus 178 ~~rl~~~~l~Pggl------~~Ph~~-~------A~ei~yV~~G~g~ig~V~~~~-----~~~~~l~~GDv~~iPaG~~h 239 (540)
+++..+.+|.||.+ +--||| . .+|+++|++|+|.+=+-.+.+ -....+++||+++||+|.+|
T Consensus 49 ~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH 128 (182)
T PF06560_consen 49 NLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAH 128 (182)
T ss_dssp -EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EE
T ss_pred eEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceE
Confidence 46788889999964 345554 3 689999999999998877665 23468899999999999999
Q ss_pred EEEeCCCCccEEEEEEe
Q 040805 240 YVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 240 ~~~N~g~~e~l~~v~i~ 256 (540)
-.+|+| +++|++.++.
T Consensus 129 ~tIN~g-~~~L~~~~~~ 144 (182)
T PF06560_consen 129 RTINTG-DEPLVFAAWV 144 (182)
T ss_dssp EEEE-S-SS-EEEEEEE
T ss_pred EEEECC-CCcEEEEEEE
Confidence 999998 6799998887
No 42
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.12 E-value=1.6e-05 Score=87.41 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccC
Q 040805 354 NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEG 433 (540)
Q Consensus 354 ~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~ 433 (540)
..|....+.. +-++.+..++|.||+-..+|+|+...++.||++|++.+.+=.
T Consensus 363 pWG~~~~~~~-------~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg--------------------- 414 (468)
T TIGR01479 363 PWGKYDSIDQ-------GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD--------------------- 414 (468)
T ss_pred CCCceEEEec-------CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC---------------------
Confidence 4665544442 236889999999999989999999999999999999997421
Q ss_pred CccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805 434 SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 434 ~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
+. ..|++||.++||+|.+|.+.|.+++++++++..+
T Consensus 415 ----~~--~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~ 450 (468)
T TIGR01479 415 ----ET--LLLTENESTYIPLGVIHRLENPGKIPLELIEVQS 450 (468)
T ss_pred ----EE--EEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 22 3799999999999999999999999999988744
No 43
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.08 E-value=3e-05 Score=74.68 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=53.7
Q ss_pred CCCccccceEEEEEEcCCC------cccccccCC------CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCC
Q 040805 367 RPLEDLDITVSYANISKGA------MAAPFYNSR------STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGS 434 (540)
Q Consensus 367 p~L~~l~isv~~~~L~pgg------m~~PH~h~~------A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~ 434 (540)
..|+..+|......|.||- |.--|||+. -+|+-+|++|+|.+-+-.+.+.. .
T Consensus 43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~----------------~ 106 (182)
T PF06560_consen 43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDD----------------V 106 (182)
T ss_dssp -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-------------------
T ss_pred ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCc----------------c
Confidence 3455567777888888875 567799998 88999999999999988876510 0
Q ss_pred ccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 435 ATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 435 ~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
. +.+.-.+.+||+++||.|++|..+|.++++|.+...
T Consensus 107 ~--~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~ 143 (182)
T PF06560_consen 107 G--DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAW 143 (182)
T ss_dssp ----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred e--eEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEE
Confidence 0 344568999999999999999999999999998754
No 44
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.06 E-value=2.6e-05 Score=77.10 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=57.8
Q ss_pred cccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 176 LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 176 i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
-+.+..+++.++-.. .|++++.+|+.||++|+.++.+ +..++.+++||+++||+|..|.+.+.+ ..+++++
T Consensus 154 ~s~m~aGf~~~~~~s--f~wtl~~dEi~YVLEGe~~l~I----dG~t~~l~pGDvlfIPkGs~~hf~tp~---~aRflyV 224 (233)
T PRK15457 154 GSSMAAGFMQWENAF--FPWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTPS---SVRFLYV 224 (233)
T ss_pred CCceeeEEEEEecCc--cceeccceEEEEEEEeEEEEEE----CCEEEEeCCCcEEEECCCCeEEecCCC---CeeEEEE
Confidence 356777788888644 4677899999999999999998 578999999999999999994334433 4555555
Q ss_pred eecCC
Q 040805 256 IKSIN 260 (540)
Q Consensus 256 ~~~~~ 260 (540)
..|.+
T Consensus 225 ~~Pa~ 229 (233)
T PRK15457 225 AWPAN 229 (233)
T ss_pred EecCc
Confidence 54443
No 45
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.05 E-value=0.00048 Score=67.27 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=122.4
Q ss_pred eeeeCCCc-cccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCC
Q 040805 183 ILIANPQT-FVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSIN 260 (540)
Q Consensus 183 ~~~l~Pgg-l~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~ 260 (540)
++++.|+| .-.|-- ..++.++||++|+..+.+ ...++.|++|+..++|+|..+-+.|.. .++.+|-.+-....
T Consensus 65 ive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~----~G~th~l~eggyaylPpgs~~~~~N~~-~~~~rfhw~rk~Y~ 139 (264)
T COG3257 65 IVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA----EGKTHALREGGYAYLPPGSGWTLRNAQ-KEDSRFHWIRKRYQ 139 (264)
T ss_pred eEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE----cCeEEEeccCCeEEeCCCCcceEeecc-CCceEEEEEeecce
Confidence 34788887 444544 368999999999998887 667899999999999999999999986 34566554432111
Q ss_pred CCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCCCc
Q 040805 261 LPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRG 340 (540)
Q Consensus 261 ~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~ 340 (540)
.++- -+..+.|+--.+ ++.+ +
T Consensus 140 -------------------------------------~VdG---~~~P~~~~~Ne~----ei~~-----~---------- 160 (264)
T COG3257 140 -------------------------------------PVEG---VQAPELVSGNES----EIEP-----S---------- 160 (264)
T ss_pred -------------------------------------eecC---ccCCcceecChh----hCCC-----C----------
Confidence 0110 011112221111 1111 1
Q ss_pred eeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcc---cccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805 341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMA---APFYNSRSTKVAVVVAGDGYIEIACPHVSR 417 (540)
Q Consensus 341 ~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~---~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~ 417 (540)
|--..++-+.+.++++++. .||.|..+++.|||.. +-|+- .-=+||++|+|...+=..
T Consensus 161 --------~m~gtdg~~attv~P~d~r----~Dmhv~ivsFePGa~ip~aEtHvm---EHGlyvLeGk~vYrLn~d---- 221 (264)
T COG3257 161 --------PMEGTDGVIATTVLPKELR----FDMHVHIVSFEPGASIPYAETHVM---EHGLYVLEGKGVYRLNNN---- 221 (264)
T ss_pred --------CCCCCCCeEEEeeCccccC----cceEEEEEEecCCcccchhhhhhh---hcceEEEecceEEeecCc----
Confidence 1001233355566766542 4899999999999974 44541 125899999998763211
Q ss_pred CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
- -.|.+||.+.+-|..|-+.++.|...+.++-.
T Consensus 222 ---------------------w--v~V~aGD~mwm~A~cpQacyagG~g~frYLly 254 (264)
T COG3257 222 ---------------------W--VPVEAGDYIWMGAYCPQACYAGGRGAFRYLLY 254 (264)
T ss_pred ---------------------e--EEeecccEEEeeccChhhhccCCCCceEEEEE
Confidence 1 37999999999999999999998877777655
No 46
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.03 E-value=1.5e-05 Score=76.10 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
-||.-.--|++..+|++|+++|...|.+++.+......|++||+|+||+|++|......
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~ 100 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREA 100 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCC
Confidence 56655555777899999999999999999876667899999999999999999997743
No 47
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.02 E-value=1.3e-05 Score=72.73 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=50.3
Q ss_pred ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCE
Q 040805 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNL 468 (540)
Q Consensus 389 PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l 468 (540)
-|||++|+|++.|++|++.+++=.++++ .+ .+.+|||++||+|..|.-..+ +-++
T Consensus 58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~----------------------el--~v~~GDvlliPAGvGH~rl~s-S~DF 112 (163)
T COG4297 58 HHYHSGAHEVLGVLRGQAGLQIGGADGQ----------------------EL--EVGEGDVLLIPAGVGHCRLHS-SADF 112 (163)
T ss_pred ccccCCcceEEEEecceeEEEecCCCCc----------------------ee--eecCCCEEEEecCcccccccC-CCCe
Confidence 4999999999999999999999988873 33 689999999999999986544 4567
Q ss_pred EEEEE
Q 040805 469 EVVCF 473 (540)
Q Consensus 469 ~~v~F 473 (540)
.+++-
T Consensus 113 ~VvGa 117 (163)
T COG4297 113 QVVGA 117 (163)
T ss_pred EEEcc
Confidence 77753
No 48
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.00 E-value=3.3e-05 Score=68.09 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=48.3
Q ss_pred CCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805 188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI 259 (540)
Q Consensus 188 Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~ 259 (540)
|+-...||||+.-+|.||++|.+++.+ +...+.|++||+++||+|.+|.+.-.+ ++++..+.+..+.
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~----~~~~~~l~~g~~~li~p~~~H~~~~~~-~~~~~~~~i~~~~ 78 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTLHI----DGQEYPLKPGDLFLIPPGQPHSYYPDS-NEPWEYYWIYFSP 78 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEEEE----TTEEEEE-TT-EEEE-TTS-EEEEE-T-TSEEEEEEEEE--
T ss_pred CCCccCCEECCCEEEEEEeCCEEEEEE----CCEEEEEECCEEEEecCCccEEEecCC-CCCEEEEEEEECH
Confidence 555668999999999999999999987 677899999999999999999998876 3467776666433
No 49
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.99 E-value=2.2e-05 Score=73.83 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=47.9
Q ss_pred CCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
-||.-.--|.+..+|++||++|...|-+++.+......|++||+++||+|++|......
T Consensus 36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~ 94 (159)
T TIGR03037 36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPA 94 (159)
T ss_pred CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCC
Confidence 33333333445689999999999999988877667899999999999999999998754
No 50
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.99 E-value=3.6e-05 Score=84.62 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=67.5
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+.+++|.||+-..+|+|....|+.||++|++.+++=. +. ..|.+||.+.|
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-------------------------~~--~~L~~GDSi~i 436 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-------------------------DI--KLLGENESIYI 436 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-------------------------EE--EEecCCCEEEE
Confidence 6788999999999888888888889999999999998532 22 47999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEecC
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
|+|.+|.+.|.+++++++++.-+.+
T Consensus 437 p~g~~H~~~N~g~~~l~iI~V~~g~ 461 (478)
T PRK15460 437 PLGATHCLENPGKIPLDLIEVRSGS 461 (478)
T ss_pred CCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 9999999999999999999875443
No 51
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=7.6e-05 Score=66.26 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=63.1
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+|-+..++|.||+-.--|.|-+-...+||+.|++.+-.-+- . -+...+.+||.|+|
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r-L-----------------------E~ha~~~pGDf~Yi 100 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR-L-----------------------EEHAEVGPGDFFYI 100 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc-e-----------------------eeeEEecCCCeEEc
Confidence 67889999999999999999888889999999998753221 1 23356899999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|+|.||--.|.+++++..|.-
T Consensus 101 PpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 101 PPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred CCCCCCcccccCCCCeEEEEE
Confidence 999999887777888876654
No 52
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.89 E-value=6.1e-05 Score=70.85 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=54.4
Q ss_pred ccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 192 VTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.--|+|..+|+.|++.|.|.+++..++++ ....+.+||++.||+|+-||+--+. +..++.|-+|
T Consensus 88 ~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~-~~~f~AvRlF 152 (181)
T COG1791 88 LQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE-SPNFKAVRLF 152 (181)
T ss_pred HHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC-CCcEEEEEEe
Confidence 45677889999999999999999998854 5678899999999999999997765 4568888777
No 53
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.78 E-value=8.5e-05 Score=61.21 Aligned_cols=59 Identities=31% Similarity=0.398 Sum_probs=45.8
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV 241 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~ 241 (540)
.+..+++...||.+..+ | ..+|++||++|+++|+. ....+.+|++||++++|+|+..-+
T Consensus 6 ~~~~g~w~~~pg~~~~~-~-~~~E~~~vleG~v~it~---~~G~~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 6 VFSAGVWECTPGKFPWP-Y-PEDEFFYVLEGEVTITD---EDGETVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp SEEEEEEEEECEEEEEE-E-SSEEEEEEEEEEEEEEE---TTTEEEEEETTEEEEE-TTEEEEE
T ss_pred CEEEEEEEECCceeEee-C-CCCEEEEEEEeEEEEEE---CCCCEEEEcCCcEEEECCCCEEEE
Confidence 35677889999886433 3 44999999999998774 355679999999999999986554
No 54
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.62 E-value=0.00037 Score=65.74 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=51.0
Q ss_pred CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC
Q 040805 385 AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 385 gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~ 464 (540)
-+...|.|. ..||-||+.|+|.+.|...+. .-++-.+.+||+++||+|..||...+.
T Consensus 83 ~f~~EH~H~-deEvR~i~~G~g~Fdvr~~~~----------------------~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 83 KFFEEHTHE-DEEVRYIVDGSGYFDVRDGDD----------------------VWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp HHCS-EEES-S-EEEEEEECEEEEEEE-TTC----------------------EEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred hhheeEecC-hheEEEEeCcEEEEEEEcCCC----------------------EEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 456789985 479999999999999997754 234457899999999999999998876
Q ss_pred CCCEEEEEEEecC
Q 040805 465 NNNLEVVCFEINA 477 (540)
Q Consensus 465 ~e~l~~v~F~~~a 477 (540)
+..+..+=|+++.
T Consensus 140 ~~~i~aiRlF~~~ 152 (157)
T PF03079_consen 140 SPYIKAIRLFKDE 152 (157)
T ss_dssp TSSEEEEEEESSC
T ss_pred CCcEEEEEeecCC
Confidence 6677777665553
No 55
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.53 E-value=0.00023 Score=73.70 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=57.8
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
+.+++++-.-.|..+..+|||+.-+|.||++|.+.+.+ +..++.+.+||+++||+|.+|.+...+
T Consensus 24 ~~~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i----~g~~~~l~~Gd~ili~s~~~H~~~~~~ 88 (302)
T PRK10371 24 EYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI----NNEKVQINQGHITLFWACTPHQLTDPG 88 (302)
T ss_pred CCceeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEE----CCEEEEEcCCcEEEEecCCcccccccC
Confidence 67888888889999999999999999999999998776 567899999999999999999876544
No 56
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.49 E-value=0.00049 Score=64.41 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=51.4
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+..++++++... .|+..+-+|+.||++|+..+.+ ..+++..++|||++||+|+..-+.-.+ ..+++.+.
T Consensus 75 ~~l~~Gf~~le~~~--f~wtl~YDEi~~VlEG~L~i~~----~G~~~~A~~GDvi~iPkGs~I~fst~~---~a~~~Yv~ 145 (152)
T PF06249_consen 75 PRLSAGFMELEKTS--FPWTLTYDEIKYVLEGTLEISI----DGQTVTAKPGDVIFIPKGSTITFSTPD---YARFFYVT 145 (152)
T ss_dssp -SSEEEEEEEEEEE--EEEE-SSEEEEEEEEEEEEEEE----TTEEEEEETT-EEEE-TT-EEEEEEEE---EEEEEEEE
T ss_pred CceeeEEEEEeCCC--ccEEeecceEEEEEEeEEEEEE----CCEEEEEcCCcEEEECCCCEEEEecCC---CEEEEEEE
Confidence 35677888888743 4655799999999999877664 467899999999999999877764432 45555555
Q ss_pred ecCC
Q 040805 257 KSIN 260 (540)
Q Consensus 257 ~~~~ 260 (540)
.|.|
T Consensus 146 yPa~ 149 (152)
T PF06249_consen 146 YPAN 149 (152)
T ss_dssp ESTT
T ss_pred CCCc
Confidence 4543
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.49 E-value=0.00043 Score=66.22 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=50.5
Q ss_pred cCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805 382 SKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 382 ~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~ 461 (540)
.||.-..-|+|+ +.|+.|+++|...+.|++.+. .-+..|++||+|+||+|.+|...
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~g~-----------------------~~~v~L~eGd~fllP~gvpHsP~ 97 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQEDGK-----------------------RRDVPIREGEMFLLPPHVPHSPQ 97 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcCCc-----------------------eeeEEECCCCEEEeCCCCCcCCc
Confidence 566667779975 799999999999999998531 12357999999999999999876
Q ss_pred ecCCCCEEEEEE
Q 040805 462 ASQNNNLEVVCF 473 (540)
Q Consensus 462 n~~~e~l~~v~F 473 (540)
+. ++...+.+
T Consensus 98 r~--~~tv~Lvi 107 (177)
T PRK13264 98 RE--AGSIGLVI 107 (177)
T ss_pred cC--CCeEEEEE
Confidence 64 33444444
No 58
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.41 E-value=0.0012 Score=57.94 Aligned_cols=63 Identities=16% Similarity=0.344 Sum_probs=42.6
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
++-.+.|||| +-.+|.||++|.+.+.+ .- +. ..|++||+++||+|.+|....
T Consensus 12 ~~~~~~~h~h-~~~~i~~v~~G~~~~~~-~~------------------------~~--~~l~~g~~~li~p~~~H~~~~ 63 (136)
T PF02311_consen 12 PNFEFPPHWH-DFYEIIYVLSGEGTLHI-DG------------------------QE--YPLKPGDLFLIPPGQPHSYYP 63 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE-TT------------------------EE--EEE-TT-EEEE-TTS-EEEEE
T ss_pred CCCccCCEEC-CCEEEEEEeCCEEEEEE-CC------------------------EE--EEEECCEEEEecCCccEEEec
Confidence 4556789997 48899999999999853 21 22 379999999999999999888
Q ss_pred cCCCCEEEEEE
Q 040805 463 SQNNNLEVVCF 473 (540)
Q Consensus 463 ~~~e~l~~v~F 473 (540)
.+++++....+
T Consensus 64 ~~~~~~~~~~i 74 (136)
T PF02311_consen 64 DSNEPWEYYWI 74 (136)
T ss_dssp -TTSEEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 76667765444
No 59
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.40 E-value=0.00059 Score=69.24 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=45.1
Q ss_pred ccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 190 TFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 190 gl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
....||||+..+|+||++|.+.+.+ +..++.+.+||+++||+|..|......
T Consensus 34 ~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~l~~i~p~~~H~~~~~~ 85 (278)
T PRK10296 34 SVSGLHQHDYYEFTLVLTGRYYQEI----NGKRVLLERGDFVFIPLGSHHQSFYEF 85 (278)
T ss_pred cCCCCcccccEEEEEEEeceEEEEE----CCEEEEECCCcEEEeCCCCccceeeeC
Confidence 3457999999999999999998887 566899999999999999999775543
No 60
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.33 E-value=0.00051 Score=68.07 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=58.9
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
..++.++.+.||+.++.|.|...|+++|++|.- .+. ...+.+||++.+|+|..|...+.+ ++++.++++.+
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f----~de----~g~y~~Gd~i~~p~~~~H~p~a~~-~~~Cicl~v~d 196 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAF----SDE----TGVYGVGDFEEADGSVQHQPRTVS-GGDCLCLAVLD 196 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEE----EcC----CCccCCCeEEECCCCCCcCcccCC-CCCeEEEEEec
Confidence 357888999999998888888999999999983 222 246899999999999999999986 45788887774
No 61
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.32 E-value=0.0013 Score=55.91 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=53.2
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.++...+.|.||+.=.|.-.-+.+-+.||++|...|+|-.. . ..+.+||+|.|
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~-------------------------~--f~v~~G~~F~V 63 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET-------------------------S--FVVTKGGSFQV 63 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE-------------------------E--EEEETT-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc-------------------------E--EEEeCCCEEEE
Confidence 48899999999999999887788889999999999986332 2 36999999999
Q ss_pred CCCCeEEEEecCCCCEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVV 471 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v 471 (540)
|+|-...+.|.++++..+.
T Consensus 64 P~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 64 PRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp -TT-EEEEEE-SSS-EEEE
T ss_pred CCCCEEEEEECCCCcEEEE
Confidence 9999999999887766543
No 62
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.26 E-value=0.0019 Score=64.12 Aligned_cols=61 Identities=7% Similarity=0.162 Sum_probs=49.1
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
-.|++.+..+....+ .|+.+-.||.||++|+..+.+ ++ +. ..+.+||+++
T Consensus 155 s~m~aGf~~~~~~sf---~wtl~~dEi~YVLEGe~~l~I---dG----------------------~t--~~l~pGDvlf 204 (233)
T PRK15457 155 SSMAAGFMQWENAFF---PWTLNYDEIDMVLEGELHVRH---EG----------------------ET--MIAKAGDVMF 204 (233)
T ss_pred CceeeEEEEEecCcc---ceeccceEEEEEEEeEEEEEE---CC----------------------EE--EEeCCCcEEE
Confidence 358889999987553 399999999999999999987 23 23 3699999999
Q ss_pred ECCCCeEEEEe
Q 040805 452 VPAGHPVVTVA 462 (540)
Q Consensus 452 VPaG~~h~~~n 462 (540)
||+|..|....
T Consensus 205 IPkGs~~hf~t 215 (233)
T PRK15457 205 IPKGSSIEFGT 215 (233)
T ss_pred ECCCCeEEecC
Confidence 99999954433
No 63
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.26 E-value=0.0016 Score=61.46 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=41.7
Q ss_pred ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 387 ~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
..-|.|+ +.++.||++|+..+.+...+. .+. ..|++||+|+||+|.+|...+.
T Consensus 41 ~d~H~~~-tdE~FyqleG~~~l~v~d~g~---------------------~~~--v~L~eGd~flvP~gvpHsP~r~ 93 (159)
T TIGR03037 41 TDFHDDP-GEEFFYQLKGEMYLKVTEEGK---------------------RED--VPIREGDIFLLPPHVPHSPQRP 93 (159)
T ss_pred cccccCC-CceEEEEEcceEEEEEEcCCc---------------------EEE--EEECCCCEEEeCCCCCcccccC
Confidence 3344443 889999999999999887632 123 4799999999999999988775
No 64
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.26 E-value=0.0019 Score=60.99 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=55.8
Q ss_pred ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC
Q 040805 387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN 466 (540)
Q Consensus 387 ~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e 466 (540)
..=|.| ...||-|++.|.|.+.|..+++ +.+.-.+.+||.+.||+|.-||.--+.+.
T Consensus 88 ~~EH~H-~d~EvRy~vaG~GiF~v~~~d~----------------------~~~~i~c~~gDLI~vP~gi~HwFtlt~~~ 144 (181)
T COG1791 88 LQEHLH-TDDEVRYFVAGEGIFDVHSPDG----------------------KVYQIRCEKGDLISVPPGIYHWFTLTESP 144 (181)
T ss_pred HHHhcc-CCceEEEEEecceEEEEECCCC----------------------cEEEEEEccCCEEecCCCceEEEEccCCC
Confidence 345776 6889999999999999999987 34556789999999999999998777666
Q ss_pred CEEEEEEEecC
Q 040805 467 NLEVVCFEINA 477 (540)
Q Consensus 467 ~l~~v~F~~~a 477 (540)
++..|-+++++
T Consensus 145 ~f~AvRlF~~~ 155 (181)
T COG1791 145 NFKAVRLFTEP 155 (181)
T ss_pred cEEEEEEeeCC
Confidence 77777666665
No 65
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.26 E-value=0.00092 Score=69.46 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=48.6
Q ss_pred eCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
--|.....||||+.-+|+||++|.|.+.+ +...+.+.+||+++||+|.+|.+....
T Consensus 55 ~~~~~~~~~H~H~~~el~~v~~G~g~~~v----~~~~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 55 RYPQDVFAEHTHDFCELVIVWRGNGLHVL----NDRPYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCCCccccceEEEEEEEcCeEEEEE----CCEEEeecCCeEEEECCCCeecccccC
Confidence 34555668999999999999999999887 667899999999999999999987654
No 66
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.25 E-value=0.0041 Score=56.08 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=65.9
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
+.+-..+|.||+-..-||-|-=|-+|+++|+|.|..+.. ..++.|++|.++++-+--.|++.... +|+++|+|+|
T Consensus 35 FS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~--G~~~~i~pGt~YaLd~hD~H~lra~~---dm~~vCVFnP 109 (126)
T PF06339_consen 35 FSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDT--GEVHPIKPGTMYALDKHDRHYLRAKT---DMRLVCVFNP 109 (126)
T ss_pred EEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccC--CcEEEcCCCeEEecCCCccEEEEecC---CEEEEEEcCC
Confidence 567777999999988888888899999999998888653 46899999999999999999998753 7999999965
Q ss_pred C
Q 040805 259 I 259 (540)
Q Consensus 259 ~ 259 (540)
.
T Consensus 110 p 110 (126)
T PF06339_consen 110 P 110 (126)
T ss_pred C
Confidence 4
No 67
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.24 E-value=0.00092 Score=56.96 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=45.9
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
..++.++.+.||+.++.|.|...+.+|||+|... +.+ .++.+||.++.|+|+.|-..-
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~----d~~----~~~~~G~~~~~p~g~~h~~~s 80 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPGGEEILVLEGELS----DGD----GRYGAGDWLRLPPGSSHTPRS 80 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEE----ETT----CEEETTEEEEE-TTEEEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEE----ECC----ccCCCCeEEEeCCCCccccCc
Confidence 4578888999999988888999999999999764 222 356999999999999999985
No 68
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.15 E-value=0.0038 Score=57.79 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=56.5
Q ss_pred CCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeC
Q 040805 366 FRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIR 445 (540)
Q Consensus 366 ~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 445 (540)
+..++ .+.|-+-+|.||+-..+|=| ...||.||++|+|..-+..++... .| +.-...+-
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~-----pG-------------~pqef~~~ 96 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKY-----PG-------------KPQEFPIF 96 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--------------------S-EEEEE-
T ss_pred hcCce--eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccC-----CC-------------CceEEEec
Confidence 34555 47889999999999999998 577999999999999998665321 00 11224788
Q ss_pred CCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCCcccccc
Q 040805 446 TDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGNIRFPLA 486 (540)
Q Consensus 446 ~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~~~~~LA 486 (540)
+++.|.||.+-+|-+.|++ .++|.++..... .+.+.|+-
T Consensus 97 pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr--pPvkvf~y 136 (167)
T PF02041_consen 97 PNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR--PPVKVFIY 136 (167)
T ss_dssp TTEEEEE-TT--EEEE---SSS-EEEEEEEES--SS--EEEE
T ss_pred CCCeEEeCCCCcceeecCCCCcceEEEEEecC--CCeEEEEe
Confidence 9999999999999999987 488998776333 46666654
No 69
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.14 E-value=0.0013 Score=67.30 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=47.3
Q ss_pred CCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.+..-..||||+.-+++||++|++++.+ +...+.+.+||+++||+|.+|++...+
T Consensus 26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i----~~~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQFCEIVIVWRGNGLHVL----NDHPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCccccccceeEEEEecCceEEEE----CCeeeeecCCeEEEEcCCCcccccccC
Confidence 3444457899999999999999999988 567899999999999999999987643
No 70
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.14 E-value=0.0012 Score=60.20 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=48.6
Q ss_pred CCcccc-cccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 188 PQTFVT-PTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 188 Pggl~~-Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.|+++. +||| +|.|++.|++|++.+-+=.+ +.....+.+||+++||||+-|.-.-. +-++.++..+
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~-~G~el~v~~GDvlliPAGvGH~rl~s--S~DF~VvGaY 118 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGA-DGQELEVGEGDVLLIPAGVGHCRLHS--SADFQVVGAY 118 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCC-CCceeeecCCCEEEEecCcccccccC--CCCeEEEccc
Confidence 344443 4444 79999999999998877333 33567899999999999999986443 3467777655
No 71
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0034 Score=58.22 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=55.0
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.+.+++..++| -..|+..+-+++-||++|+..|.+ ..++..-++||||+||.|.-.-+--++ + ++++.+.
T Consensus 98 ~~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~----~g~tv~a~aGDvifiPKgssIefst~g--e-a~flyvt 168 (176)
T COG4766 98 SRLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI----DGRTVIAGAGDVIFIPKGSSIEFSTTG--E-AKFLYVT 168 (176)
T ss_pred Cccccceeeecc--ccCcceecccceeEEEeeeEEEEE----cCCeEecCCCcEEEecCCCeEEEeccc--e-EEEEEEE
Confidence 445566667788 346888899999999999987665 334667899999999999877775554 2 6665555
Q ss_pred ecCC
Q 040805 257 KSIN 260 (540)
Q Consensus 257 ~~~~ 260 (540)
.|.|
T Consensus 169 yPan 172 (176)
T COG4766 169 YPAN 172 (176)
T ss_pred cccc
Confidence 4543
No 72
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.05 E-value=0.0016 Score=68.47 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=62.5
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.|.+..-.|.||-...||=| ++..|-||++|+|-.++|+. +++ .+++||+|++
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~g------------------------~~~--~~~~gD~~~t 132 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVDG------------------------ERT--TMHPGDFIIT 132 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEECC------------------------EEE--eeeCCCEEEe
Confidence 57778888999999999987 56789999999997777765 344 7899999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|.++.|.-.|.+++++.|+.+
T Consensus 133 P~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 133 PSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred CCCeeEecccCCCCcEEEEec
Confidence 999999988888888777554
No 73
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.98 E-value=0.00097 Score=67.31 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=46.5
Q ss_pred CCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 188 Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
|.....+|||+.-+|+||++|.+++.+ +...+.+++||+++||+|..|.+.+.+
T Consensus 24 ~~~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHHDFHEIVIVEHGTGIHVF----NGQPYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred ccccccccccCceeEEEEecCceeeEe----cCCcccccCCcEEEECCCccchhhhcc
Confidence 445567899999999999999999887 556899999999999999999877654
No 74
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.95 E-value=0.0026 Score=56.96 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=45.6
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEE
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV 241 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~ 241 (540)
-.+++...||.+. .....+|.+|+|+|++.++ +++.+...|++||++++|+|+.--+
T Consensus 46 ~~GiWe~TpG~~r--~~y~~~E~chil~G~v~~T---~d~Ge~v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 46 ETGIWECTPGKFR--VTYDEDEFCHILEGRVEVT---PDGGEPVEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred eEeEEEecCccce--EEcccceEEEEEeeEEEEE---CCCCeEEEEcCCCEEEECCCCeEEE
Confidence 4567888999872 2235699999999998655 6778899999999999999986544
No 75
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.95 E-value=0.0048 Score=57.33 Aligned_cols=62 Identities=11% Similarity=0.283 Sum_probs=42.5
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~ 246 (540)
.=-||.-.-=|.-..+|++|.++|...+.++..+......|++||+|.+|++++|.=+-..+
T Consensus 39 VGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 39 VGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp EESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred EcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 33444433333346899999999999999999988888999999999999999999877653
No 76
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.82 E-value=0.0026 Score=64.54 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=47.9
Q ss_pred eCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
..|+-...+|||+.-+++||++|.+++.+ +..++.+++||+++||+|.+|.+...+
T Consensus 25 ~~~~~~~~~H~h~~~~l~~v~~G~~~~~i----~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 25 RYPQDVFAEHTHEFCELVMVWRGNGLHVL----NERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCCccccceEEEEEEecCcEEEEE----CCEEEeecCCcEEEECCCCcccccccC
Confidence 35555568899999999999999999887 667899999999999999999986544
No 77
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.82 E-value=0.016 Score=52.96 Aligned_cols=99 Identities=11% Similarity=0.190 Sum_probs=57.3
Q ss_pred ceeecCCceEEEeccCccccccccccccceeeeeeeCCCcc-cccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCC
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTF-VTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRG 228 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl-~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~G 228 (540)
..+..+-|.+.++.+++. .-+ .+ -|+=++.-.|++. .-.|+| ...++++|++|+..+.+-+.....++.|..-
T Consensus 9 ~~~~D~RG~L~~~e~~~~--ipf-~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~ 83 (131)
T PF05523_consen 9 KKISDERGSLSVIERFDD--IPF-EI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEP 83 (131)
T ss_dssp -EEEETTEEEEEEETTTS--SSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--T
T ss_pred CceeCCCCcEEEEeccCC--CCC-Cc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCC
Confidence 345677899999976632 122 22 2443343344544 677766 6899999999999999766666678888666
Q ss_pred -cEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 229 -DIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 229 -Dv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.||+|+.|-+.|.++ .++++.+.
T Consensus 84 ~~~L~Ippg~w~~~~~~s~--~svlLv~a 110 (131)
T PF05523_consen 84 NKGLYIPPGVWHGIKNFSE--DSVLLVLA 110 (131)
T ss_dssp TEEEEE-TT-EEEEE---T--T-EEEEEE
T ss_pred CeEEEECCchhhHhhccCC--CcEEEEEc
Confidence 499999999999999974 36666554
No 78
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.79 E-value=0.0028 Score=64.37 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=45.4
Q ss_pred CccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 189 QTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 189 ggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
+....||||+ .-+++||++|.+.+.+ +...+.+++||+++||+|.+|.+....
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~----~~~~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL----DEHEYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE----CCEEEEecCCeEEEeCCCCccccccCC
Confidence 3457899997 6899999999998777 446899999999999999999987654
No 79
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=96.79 E-value=0.014 Score=52.74 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=66.5
Q ss_pred cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805 371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY 450 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~ 450 (540)
++|+|+-...|.+|.-...|| .|--|-+|+++|+|.++.+..+ ++ ..+++|.++
T Consensus 32 gmGFS~h~T~i~aGtet~~~Y-knHlEAvyci~G~Gev~~~~~G-----------------------~~--~~i~pGt~Y 85 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHY-KNHLEAVYCIEGEGEVEDLDTG-----------------------EV--HPIKPGTMY 85 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEe-cCceEEEEEEeceEEEEEccCC-----------------------cE--EEcCCCeEE
Confidence 568999999999999999999 7999999999999999987642 22 479999999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEE
Q 040805 451 IVPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 451 vVPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
+.-+-=.|++.+.. +|.++|.+
T Consensus 86 aLd~hD~H~lra~~--dm~~vCVF 107 (126)
T PF06339_consen 86 ALDKHDRHYLRAKT--DMRLVCVF 107 (126)
T ss_pred ecCCCccEEEEecC--CEEEEEEc
Confidence 99999999999874 89999853
No 80
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.75 E-value=0.018 Score=52.63 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=56.3
Q ss_pred cccCCCceEEEecCCCCCCCccccceEEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805 350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS 428 (540)
Q Consensus 350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~ 428 (540)
.+...-|.+..+...+...+. =-.+..+.-.|+| .+.-|+|...+++++|++|+..+.+-+....
T Consensus 10 ~~~D~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~------------ 75 (131)
T PF05523_consen 10 KISDERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE------------ 75 (131)
T ss_dssp EEEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E------------
T ss_pred ceeCCCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc------------
Confidence 455668888888866433332 1234555334444 4999999999999999999999986654321
Q ss_pred ccccCCccceEEeeeeCCC-cEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 429 TREEGSATYHKVSSRIRTD-SAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~G-DV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
+.+ .|... .++.||+|+.|.+.+.+. +..++++
T Consensus 76 ---------~~~--~L~~~~~~L~Ippg~w~~~~~~s~-~svlLv~ 109 (131)
T PF05523_consen 76 ---------EEF--ILDEPNKGLYIPPGVWHGIKNFSE-DSVLLVL 109 (131)
T ss_dssp ---------EEE--EE--TTEEEEE-TT-EEEEE---T-T-EEEEE
T ss_pred ---------EEE--EECCCCeEEEECCchhhHhhccCC-CcEEEEE
Confidence 223 45444 699999999999988754 4666666
No 81
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.71 E-value=0.0057 Score=50.32 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=43.0
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
+++..-..+||.+..+ | ..+|++||++|++.++.- ++ .. ..|++||++++|
T Consensus 7 ~~~g~w~~~pg~~~~~-~--~~~E~~~vleG~v~it~~--~G----------------------~~--~~~~aGD~~~~p 57 (74)
T PF05899_consen 7 FSAGVWECTPGKFPWP-Y--PEDEFFYVLEGEVTITDE--DG----------------------ET--VTFKAGDAFFLP 57 (74)
T ss_dssp EEEEEEEEECEEEEEE-E--SSEEEEEEEEEEEEEEET--TT----------------------EE--EEEETTEEEEE-
T ss_pred EEEEEEEECCceeEee-C--CCCEEEEEEEeEEEEEEC--CC----------------------CE--EEEcCCcEEEEC
Confidence 5566777788775433 4 349999999999988743 33 23 379999999999
Q ss_pred CCCeEEEE
Q 040805 454 AGHPVVTV 461 (540)
Q Consensus 454 aG~~h~~~ 461 (540)
+|+...+.
T Consensus 58 ~G~~~~w~ 65 (74)
T PF05899_consen 58 KGWTGTWE 65 (74)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99977554
No 82
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.62 E-value=0.0063 Score=62.23 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
+..-+.|||| +-.+|+||++|.|.+.| ++ +. ..+.+||+++||+|.+|.+..
T Consensus 27 ~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~----------------------~~--~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 27 PQETFVEHTH-QFCEIVIVWRGNGLHVL---ND----------------------HP--YRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred CCCCCccccc-cceeEEEEecCceEEEE---CC----------------------ee--eeecCCeEEEEcCCCcccccc
Confidence 3334669998 68899999999999885 22 22 379999999999999998765
Q ss_pred cCC
Q 040805 463 SQN 465 (540)
Q Consensus 463 ~~~ 465 (540)
.++
T Consensus 79 ~~~ 81 (290)
T PRK13501 79 VHD 81 (290)
T ss_pred cCC
Confidence 433
No 83
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=96.52 E-value=0.0085 Score=50.99 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=46.8
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+..+..+.+.||+.+..|.|+ ..+.+||++|+...+ + .++.+||.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d~----~---------------------------~~~~~G~~~~~ 70 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSDG----D---------------------------GRYGAGDWLRL 70 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEET----T---------------------------CEEETTEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEEC----C---------------------------ccCCCCeEEEe
Confidence 578999999999999999985 567779999988742 1 24689999999
Q ss_pred CCCCeEEEEec
Q 040805 453 PAGHPVVTVAS 463 (540)
Q Consensus 453 PaG~~h~~~n~ 463 (540)
|+|..|...+.
T Consensus 71 p~g~~h~~~s~ 81 (91)
T PF12973_consen 71 PPGSSHTPRSD 81 (91)
T ss_dssp -TTEEEEEEES
T ss_pred CCCCccccCcC
Confidence 99999988853
No 84
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=96.51 E-value=0.076 Score=57.29 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=40.2
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
..+..+.+..+.... ......|++|++|++.+. . ++ .. ..|++|++++||
T Consensus 321 F~~~~~~l~~~~~~~---~~~~~~Illv~~G~~~i~--~-~~----------------------~~--~~l~~G~~~fip 370 (389)
T PRK15131 321 FAFSLHDLSDQPTTL---SQQSAAILFCVEGEAVLW--K-GE----------------------QQ--LTLKPGESAFIA 370 (389)
T ss_pred cEEEEEEECCceEEe---cCCCcEEEEEEcceEEEE--e-CC----------------------eE--EEECCCCEEEEe
Confidence 445555555442222 235778999999999874 2 22 12 369999999999
Q ss_pred CCCeEEEEec
Q 040805 454 AGHPVVTVAS 463 (540)
Q Consensus 454 aG~~h~~~n~ 463 (540)
++...+.+.+
T Consensus 371 a~~~~~~~~g 380 (389)
T PRK15131 371 ANESPVTVSG 380 (389)
T ss_pred CCCccEEEec
Confidence 9988776643
No 85
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=96.44 E-value=0.1 Score=54.20 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=39.8
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
.++.++.+... +.. .+.++..|++|++|++.+.. . + .. ..|++|++++||
T Consensus 235 F~~~~~~~~~~-~~~--~~~~~~~il~v~~G~~~i~~--~-~----------------------~~--~~l~~G~~~~ip 284 (302)
T TIGR00218 235 FSVYKWDISGK-AEF--IQQQSALILSVLEGSGRIKS--G-G----------------------KT--LPLKKGESFFIP 284 (302)
T ss_pred eEEEEEEeCCc-eee--ccCCCcEEEEEEcceEEEEE--C-C----------------------EE--EEEecccEEEEc
Confidence 45566666543 211 12457789999999998852 2 1 12 368999999999
Q ss_pred CCCeEEEEec
Q 040805 454 AGHPVVTVAS 463 (540)
Q Consensus 454 aG~~h~~~n~ 463 (540)
++...+.+.+
T Consensus 285 a~~~~~~i~g 294 (302)
T TIGR00218 285 AHLGPFTIEG 294 (302)
T ss_pred cCCccEEEEe
Confidence 9996665543
No 86
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.43 E-value=0.01 Score=61.57 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
+.+.....|..|..+||| +--+|.||++|.+.+.+ ++ +. ..|.+||+++||+
T Consensus 27 ~~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g----------------------~~--~~l~~Gd~ili~s 78 (302)
T PRK10371 27 RLEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NN----------------------EK--VQINQGHITLFWA 78 (302)
T ss_pred eeEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CC----------------------EE--EEEcCCcEEEEec
Confidence 344555667889999998 67899999999987664 22 22 3699999999999
Q ss_pred CCeEEEEecCC
Q 040805 455 GHPVVTVASQN 465 (540)
Q Consensus 455 G~~h~~~n~~~ 465 (540)
|.+|.+...++
T Consensus 79 ~~~H~~~~~~~ 89 (302)
T PRK10371 79 CTPHQLTDPGN 89 (302)
T ss_pred CCcccccccCC
Confidence 99998765443
No 87
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.42 E-value=0.017 Score=58.54 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=41.2
Q ss_pred CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 384 ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
+....|||| +..+|+||++|.+.+.+ ++ +. ..+.+||+++||+|..|....
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~----------------------~~--~~l~~g~l~~i~p~~~H~~~~ 83 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NG----------------------KR--VLLERGDFVFIPLGSHHQSFY 83 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CC----------------------EE--EEECCCcEEEeCCCCccceee
Confidence 445689998 78899999999999875 22 23 379999999999999996643
No 88
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.40 E-value=0.0083 Score=62.34 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
|.....|||| +..+|+||++|.|.+.+=. +. ..+.+|||++||+|.+|.+..
T Consensus 57 ~~~~~~~H~H-~~~el~~v~~G~g~~~v~~-------------------------~~--~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 57 PQDVFAEHTH-DFCELVIVWRGNGLHVLND-------------------------RP--YRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred CCCCCCcccc-ceEEEEEEEcCeEEEEECC-------------------------EE--EeecCCeEEEECCCCeecccc
Confidence 4444689998 5899999999999975322 12 379999999999999998765
Q ss_pred cCC
Q 040805 463 SQN 465 (540)
Q Consensus 463 ~~~ 465 (540)
..+
T Consensus 109 ~~~ 111 (312)
T PRK13500 109 VND 111 (312)
T ss_pred cCC
Confidence 443
No 89
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.31 E-value=0.011 Score=59.95 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=47.1
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
-+....||||.+--+|+||++|.+.+.+ ++ +. ..+.+||+++||+|.+|.+..
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~----------------------~~--~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEGSIALQL---DE----------------------HE--YSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred cCCCCCCcccccceeEEEEeeCceEEEE---CC----------------------EE--EEecCCeEEEeCCCCcccccc
Confidence 3456899998657899999999998664 12 22 379999999999999998766
Q ss_pred cCCCCEEEEEE
Q 040805 463 SQNNNLEVVCF 473 (540)
Q Consensus 463 ~~~e~l~~v~F 473 (540)
..+....++.|
T Consensus 85 ~~~~~~~~i~i 95 (287)
T TIGR02297 85 DLDADGHVLTV 95 (287)
T ss_pred CCCcceEEEEe
Confidence 54433333443
No 90
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.30 E-value=0.015 Score=57.66 Aligned_cols=69 Identities=7% Similarity=-0.006 Sum_probs=56.8
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+..+..++|.||+-+..|.| ...|+.+|++|.-. +.. ..+.+||++.+
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de~---------------------------g~y~~Gd~i~~ 173 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DET---------------------------GVYGVGDFEEA 173 (215)
T ss_pred CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cCC---------------------------CccCCCeEEEC
Confidence 35788999999999999999 67789999999932 221 24789999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|.|..|...+.+++++..++.
T Consensus 174 p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 174 DGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred CCCCCcCcccCCCCCeEEEEE
Confidence 999999999987777776654
No 91
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.23 E-value=0.0056 Score=61.92 Aligned_cols=206 Identities=14% Similarity=0.107 Sum_probs=88.2
Q ss_pred ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 175 GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
|.+.+|| .+.+|-..+||+|+++..+||++|....+ .......-|.+|..+..|+|..|+....++ ..|.++-
T Consensus 35 g~~~~~v---kf~~g~~~pph~H~~~~~~~Vi~G~~~~~---~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~-~~~~~~e 107 (251)
T PF14499_consen 35 GPSGMRV---KFPAGFSSPPHIHNADYRGTVISGELHNG---DPKAAAMWLPAGSYWFQPAGEPHITAAEGE-TNLLFIE 107 (251)
T ss_dssp S-EEEEE---EE-TT-EE--BEESS-EEEEEEESEEEET---TEE-----E-TTEEEEE-TT-EEEETTS-E-E-EEEEE
T ss_pred CcceEEE---EcCCCccCCCcceeeeEEEEEEEeEEEcC---CCcccceecCCCceEeccCCCceeeeccCc-cEEEEEE
Confidence 6677777 88888888999999999999999975443 112234569999999999999999877652 2344432
Q ss_pred EeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC
Q 040805 255 FIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF 334 (540)
Q Consensus 255 i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~ 334 (540)
+ .+-| |. + .=.+.||.-.+.-+.. +...|+=...++|. |-.
T Consensus 108 ~---g~gp--~~---v---------------~p~~~~~~~~e~p~n~-----~~~~ivwld~~dl~-----------W~~ 148 (251)
T PF14499_consen 108 I---GEGP--YD---V---------------KPSEEAFDNGERPINV-----DKDNIVWLDASDLE-----------WIS 148 (251)
T ss_dssp ----S-----EE---------------------------SS--TT-------GGG-EEEEECCCS-------------EE
T ss_pred e---CCCc--cc---c---------------cccccccccccccccc-----ccccceEeccccCC-----------ccc
Confidence 2 2211 11 0 0011222211111111 12344444332221 210
Q ss_pred CCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805 335 AGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 335 ~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~ 414 (540)
.+| ....+=.+..+..+ |. +-.+...++.|-.|---.+|+|+ ..+=+|||+|....++-.-.
T Consensus 149 ------------~~~-~~~~g~~~a~Lwgd--~~--~g~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~ 210 (251)
T PF14499_consen 149 ------------APP-GPPPGAQIAFLWGD--PN--TGQYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS 210 (251)
T ss_dssp -------------SS-STT-SEEEEEEEE---TT--S-EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE
T ss_pred ------------cCC-CCCCcceEEEEecC--CC--CCceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC
Confidence 000 00111133333322 11 11244556666666667888875 66889999999887532211
Q ss_pred CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805 415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV 470 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~ 470 (540)
. ...|.+|.-|.-|....|-+.++ +++..|
T Consensus 211 ~-------------------------~~~L~~GSYf~s~~~~~H~~~~~-e~~~vl 240 (251)
T PF14499_consen 211 N-------------------------FGTLDPGSYFGSPGHITHGIFIT-EDECVL 240 (251)
T ss_dssp T-------------------------TEEEEE-TT-EE--E------EE-SS-EEE
T ss_pred C-------------------------CccccCCcccccCCccccccccc-CCCEEE
Confidence 1 14689999999999999987644 444444
No 92
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.22 E-value=0.017 Score=58.64 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=47.6
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
+.+..-...|.-...|||| +..+|+||++|.+.+.+=. +. ..|.+||+++||
T Consensus 18 ~~~~~~~~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~~-------------------------~~--~~l~~g~l~li~ 69 (282)
T PRK13502 18 QAVTVADRYPQDVFAEHTH-EFCELVMVWRGNGLHVLNE-------------------------RP--YRITRGDLFYIR 69 (282)
T ss_pred CceEEecCCCCCCCCcccc-ceEEEEEEecCcEEEEECC-------------------------EE--EeecCCcEEEEC
Confidence 3333444455555789998 5889999999999988522 22 379999999999
Q ss_pred CCCeEEEEecCC
Q 040805 454 AGHPVVTVASQN 465 (540)
Q Consensus 454 aG~~h~~~n~~~ 465 (540)
+|.+|.+...++
T Consensus 70 ~~~~H~~~~~~~ 81 (282)
T PRK13502 70 AEDKHSYTSVND 81 (282)
T ss_pred CCCcccccccCC
Confidence 999998765433
No 93
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.07 E-value=0.0094 Score=56.04 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=46.8
Q ss_pred ccccccccCCCeEEEEEeeEEEEEEEecCCce-EEeeCCCcEEEECCCCeEEEEeCC
Q 040805 190 TFVTPTHLDADAVFFVSWGQGTITVIRENNRE-SYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 190 gl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.|+.+|-|.-++|-||+.|.|..-+-+-+... ..-+++||+|++|||+-|-+.-+.
T Consensus 84 ~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 84 SFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 46788989999999999999998886655544 457899999999999999986654
No 94
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.02 E-value=0.029 Score=57.17 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=51.3
Q ss_pred cccccccccc---ceeeeeeeCCCccc-----cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEE
Q 040805 169 RSKLLRGLEK---YRLGILIANPQTFV-----TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFY 240 (540)
Q Consensus 169 ~~~~L~Gi~~---~rl~~~~l~Pggl~-----~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~ 240 (540)
.+|+++|-.. .-.++..+.|++-. -|+-++.-.+.||++|.+.+-+ +...+.+++||+|+||+|++|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~~~~~~i~~~~~G~~~~~~----~~~~~~~~~g~~i~i~p~~~h~ 86 (290)
T PRK10572 11 NNPLLPGYSFNAHLVAGLTPIEAGGYLDFFIDRPLGMKGYILNLTIRGQGVIFN----GGRAFVCRPGDLLLFPPGEIHH 86 (290)
T ss_pred CCcCCCCCCcceeeeecccccccCCccceeeecCCCccceEEEEEEeccEEEec----CCeeEecCCCCEEEECCCCcee
Confidence 4577776311 11122344566543 2334456678899999998754 4457999999999999999998
Q ss_pred EEeCCCCcc
Q 040805 241 VTNTDDDEK 249 (540)
Q Consensus 241 ~~N~g~~e~ 249 (540)
+....+...
T Consensus 87 ~~~~~~~~~ 95 (290)
T PRK10572 87 YGRHPDSDE 95 (290)
T ss_pred eccCCCCCc
Confidence 776543333
No 95
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=95.73 E-value=0.036 Score=52.07 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=44.0
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.|++.+++|... ...|..+-+||-||++|+..+. .. + +++ ..++|||++|
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~~-G----------------------~~~--~A~~GDvi~i 125 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--ID-G----------------------QTV--TAKPGDVIFI 125 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--ET-T----------------------EEE--EEETT-EEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEE--EC-C----------------------EEE--EEcCCcEEEE
Confidence 588899999874 4569899999999999976665 33 3 455 4679999999
Q ss_pred CCCCeEEEEec
Q 040805 453 PAGHPVVTVAS 463 (540)
Q Consensus 453 PaG~~h~~~n~ 463 (540)
|+|.-+.+-..
T Consensus 126 PkGs~I~fst~ 136 (152)
T PF06249_consen 126 PKGSTITFSTP 136 (152)
T ss_dssp -TT-EEEEEEE
T ss_pred CCCCEEEEecC
Confidence 99998876443
No 96
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.67 E-value=0.021 Score=57.86 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=45.8
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
|-+..++.+.+|=...||+| +++.-+||++|....+ .. +.-..-|.+|.-+..
T Consensus 35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~-----~~---------------------~a~~~~l~~Gsy~~~ 87 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG-----DP---------------------KAAAMWLPAGSYWFQ 87 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET-----TE---------------------E-----E-TTEEEEE
T ss_pred CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC-----CC---------------------cccceecCCCceEec
Confidence 77889999999999999998 7999999999975552 11 222246999999999
Q ss_pred CCCCeEEEEecCCCCEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVV 471 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v 471 (540)
|+|.+|+..+.++..+.|+
T Consensus 88 PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 88 PAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp -TT-EEEETTS-EE-EEEE
T ss_pred cCCCceeeeccCccEEEEE
Confidence 9999998777766556665
No 97
>PRK13503 transcriptional activator RhaS; Provisional
Probab=95.65 E-value=0.027 Score=56.83 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=43.1
Q ss_pred cCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805 382 SKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 382 ~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~ 461 (540)
.+.....+||| +..+|+||++|.+.+.|=.. . ..|++||+++||+|-+|...
T Consensus 23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~-------------------------~--~~l~~g~~~~i~~~~~h~~~ 74 (278)
T PRK13503 23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ-------------------------P--YTLSGGTVCFVRDHDRHLYE 74 (278)
T ss_pred Ccccccccccc-CceeEEEEecCceeeEecCC-------------------------c--ccccCCcEEEECCCccchhh
Confidence 45566789998 78899999999998764332 1 36999999999999999765
Q ss_pred ec
Q 040805 462 AS 463 (540)
Q Consensus 462 n~ 463 (540)
+.
T Consensus 75 ~~ 76 (278)
T PRK13503 75 HT 76 (278)
T ss_pred hc
Confidence 54
No 98
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.55 E-value=0.035 Score=57.04 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=52.3
Q ss_pred eCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
|.||-..-+|++-.+.|+-|.+|+|++.| +.++|...+||+|+||.=..|-+.|. .++..+++
T Consensus 268 L~~Gf~~~~~r~t~s~iy~V~eGsg~~~I----g~~rf~~~~~D~fvVPsW~~~~~~~g--s~da~LFs 330 (351)
T COG3435 268 LPPGFHGKAHRHTDSTIYHVVEGSGYTII----GGERFDWSAGDIFVVPSWAWHEHVNG--SEDAVLFS 330 (351)
T ss_pred cCCcccCCceeccCCEEEEEEecceeEEE----CCEEeeccCCCEEEccCcceeecccC--CcceEEEe
Confidence 46776678888878889999999999888 67899999999999999999988885 34565554
No 99
>PF12852 Cupin_6: Cupin
Probab=95.53 E-value=0.03 Score=53.54 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=37.4
Q ss_pred CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 199 A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
...+.+|++|.+++.+ ++......|++||++++|.|..|++.-..
T Consensus 35 ~~~fh~V~~G~~~l~~--~~~~~~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRV--PGGGEPIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred ceEEEEEECCeEEEEE--cCCCCeEEecCCCEEEEcCCCCeEeCCCC
Confidence 3677899999998885 44357789999999999999999996544
No 100
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=95.37 E-value=0.2 Score=48.19 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=54.2
Q ss_pred cCCCcccccccCC--CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCC--CcEEEECCCC
Q 040805 382 SKGAMAAPFYNSR--STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRT--DSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h~~--A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--GDV~vVPaG~ 456 (540)
.+|.++..|+|.. -+++++|++|+...-+|+..-. |.+|. .....|.+ +..++||+|+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~-----------------SpTfG~~~~~~L~~~~~~~l~IP~G~ 114 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRN-----------------SPTFGKWVGVLLSAENKRQLWIPEGF 114 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCC-----------------cCCCCeEEEEEECCCCCCEEEeCCcc
Confidence 6799999999853 5789999999999999998532 12222 22345665 6699999999
Q ss_pred eEEEEecCCCCEEEEEE
Q 040805 457 PVVTVASQNNNLEVVCF 473 (540)
Q Consensus 457 ~h~~~n~~~e~l~~v~F 473 (540)
+|-..+.+++ ..++-+
T Consensus 115 aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 115 AHGFVVLSDE-AEFLYK 130 (176)
T ss_pred eeEEEEcCCC-eEEEEe
Confidence 9988886543 444433
No 101
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.36 E-value=0.27 Score=53.26 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=41.6
Q ss_pred eeCCCccccccc---cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 185 IANPQTFVTPTH---LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 185 ~l~Pggl~~Ph~---~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
...++.....++ .|.++++|+.+|.+.|..-. + ...|++||+++||+|+.+.+.=.+
T Consensus 131 iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L~v~pgei~VIPRG~~frv~l~g 190 (429)
T TIGR01015 131 IYLCNASMENRAFYNADGDFLIVPQQGALLITTEF--G--RLLVEPNEICVIPRGVRFRVTVLE 190 (429)
T ss_pred EEeCCCCcccceeeccCCCEEEEEEeCcEEEEEec--c--ceEecCCCEEEecCccEEEEeeCC
Confidence 445565443333 37899999999999776521 1 358999999999999998886544
No 102
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.8 Score=47.93 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCeEEEEEe-eEEE------------EEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 199 ADAVFFVSW-GQGT------------ITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 199 A~ei~yV~~-G~g~------------ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
-+|++|-+. .... .++.++.-.....|++||+|++|||++|.+..
T Consensus 123 k~Eli~g~~~~~~~~~~e~l~~~i~~~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 123 KPELIYGLTPAKSKPAIEELKEMIDRGGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred CceEEEEEchhhcchhHHHHHHhhhhccccchhhhcEEecCCCCEEEecCCCceeecc
Confidence 567777777 3332 34333344456799999999999999999843
No 103
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.33 E-value=0.068 Score=52.64 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=52.5
Q ss_pred EEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--ccc--ccccC-------C-CccccC-CccceEEe
Q 040805 376 VSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS--SSE--RRHQG-------S-STREEG-SATYHKVS 441 (540)
Q Consensus 376 v~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~--~~~--~~~~~-------~-~~~~~~-~~~~~~~~ 441 (540)
...+-|.+ |+....||.+ .+-+..++.|+=++.++.|..... ... ..+.. . ...... ....+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 33455555 6778889976 678999999999999999975310 000 00000 0 000000 11114567
Q ss_pred eeeCCCcEEEECCCCeEEEEecCCCC
Q 040805 442 SRIRTDSAYIVPAGHPVVTVASQNNN 467 (540)
Q Consensus 442 ~~l~~GDV~vVPaG~~h~~~n~~~e~ 467 (540)
..|++|||++||+|+.|++.|...++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 78999999999999999999883334
No 104
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.23 E-value=0.35 Score=52.53 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=40.4
Q ss_pred eeCCCccccccc---cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 185 IANPQTFVTPTH---LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 185 ~l~Pggl~~Ph~---~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
...++......+ .|.++++|+.+|++.|..-. -...+++||+++||+|+.+.+.=
T Consensus 137 ~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEf----G~L~v~pgei~VIPRG~~frv~l 194 (438)
T PRK05341 137 LYAANRSMQDRYFYNADGELLIVPQQGRLRLATEL----GVLDVEPGEIAVIPRGVKFRVEL 194 (438)
T ss_pred EEeCCCCcccceeecCCCCEEEEEEeCCEEEEEec----cceEecCCCEEEEcCccEEEEec
Confidence 335555443333 37899999999999776521 14689999999999999988863
No 105
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.19 E-value=0.17 Score=53.07 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=49.7
Q ss_pred eEEEEEEcCCC--cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 375 TVSYANISKGA--MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 375 sv~~~~L~pgg--m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
..+-+.++|+| -+.|||.. -+.+++=+.|+=++.|-.+........+...-. ..+.. . -.....|++|||++|
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~L~pGD~LYl 188 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFK-QLEEF-E--PVEEVVLEPGDVLYL 188 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TT-TCG---S--TSEEEEE-TT-EEEE
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCcc-ccccC-c--eeEEEEECCCCEEEE
Confidence 34567789999 89999953 444556677887888877432110000000000 00000 1 123457999999999
Q ss_pred CCCCeEEEEecCCCCEEE-EEE
Q 040805 453 PAGHPVVTVASQNNNLEV-VCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~-v~F 473 (540)
|+|++|.-.+.+ ..+.+ ++|
T Consensus 189 PrG~~H~~~~~~-~S~hltv~~ 209 (319)
T PF08007_consen 189 PRGWWHQAVTTD-PSLHLTVGF 209 (319)
T ss_dssp -TT-EEEEEESS--EEEEEEEE
T ss_pred CCCccCCCCCCC-CceEEEEee
Confidence 999999998886 55555 445
No 106
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.08 E-value=0.32 Score=46.68 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=58.7
Q ss_pred cceEEEEEEcCCCcccccccCCC-cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEe-eeeCCC--c
Q 040805 373 DITVSYANISKGAMAAPFYNSRS-TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVS-SRIRTD--S 448 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A-~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~G--D 448 (540)
++|.++ +|-++..|||..- .+++.|+.|++..-.|+-.-. +.+|.+.. ..|..- .
T Consensus 48 n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~-----------------SpTyg~~~~~~ls~~N~~ 106 (173)
T COG1898 48 NHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKD-----------------SPTYGKWVGVVLSAENKR 106 (173)
T ss_pred eEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCC-----------------CCCcceEEEEEecCCCce
Confidence 455554 9999999999998 999999999999999998532 23444432 334433 7
Q ss_pred EEEECCCCeEEEEecCCCCEEEEEE
Q 040805 449 AYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 449 V~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
++.||.|++|=+.|.++.. +++-+
T Consensus 107 ~l~IP~G~AHGf~~L~d~~-~~~y~ 130 (173)
T COG1898 107 QLYIPPGFAHGFQVLSDDA-EVVYK 130 (173)
T ss_pred EEEeCCcccceeEEccCce-EEEEE
Confidence 9999999999988887654 44433
No 107
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=95.01 E-value=0.21 Score=48.04 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=53.2
Q ss_pred cCCCcccccccCCC---cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCCCc--EEEECCC
Q 040805 382 SKGAMAAPFYNSRS---TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRTDS--AYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~~A---~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~GD--V~vVPaG 455 (540)
.+|.++.+|||..- ++++.|++|+...-+|+..-. |.+|. .....|++++ .++||+|
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~-----------------SpTfg~~~~~~Ls~~n~~~l~IP~G 113 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKG-----------------SPTFGKWVSVELSAENPRQLYIPPG 113 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTT-----------------STTTT-EEEEEEETTT--EEEE-TT
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCC-----------------CCCCCEEEEEEeCccccCEEEeCCc
Confidence 45999999999887 789999999999999986431 12222 3455676665 8999999
Q ss_pred CeEEEEecCCCCEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F 473 (540)
++|-..+.+++ ..++.+
T Consensus 114 ~aHGf~~l~d~-a~v~Y~ 130 (176)
T PF00908_consen 114 VAHGFQTLEDD-AEVLYK 130 (176)
T ss_dssp EEEEEEESSSE-EEEEEE
T ss_pred ceeeEEeccCc-eEEEEe
Confidence 99988887543 444443
No 108
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=94.88 E-value=0.095 Score=47.07 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=42.2
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
+....=.-+||-.. |+-..+|..|+++|++.++ |.+. +.+ .|++||+++||
T Consensus 45 ~~~GiWe~TpG~~r---~~y~~~E~chil~G~v~~T---~d~G---------------------e~v--~~~aGD~~~~~ 95 (116)
T COG3450 45 VETGIWECTPGKFR---VTYDEDEFCHILEGRVEVT---PDGG---------------------EPV--EVRAGDSFVFP 95 (116)
T ss_pred eeEeEEEecCccce---EEcccceEEEEEeeEEEEE---CCCC---------------------eEE--EEcCCCEEEEC
Confidence 44555556666654 3335699999999998876 5432 343 69999999999
Q ss_pred CCCeEEEE
Q 040805 454 AGHPVVTV 461 (540)
Q Consensus 454 aG~~h~~~ 461 (540)
+|+.-.+.
T Consensus 96 ~G~~g~W~ 103 (116)
T COG3450 96 AGFKGTWE 103 (116)
T ss_pred CCCeEEEE
Confidence 99987543
No 109
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=94.81 E-value=0.13 Score=50.57 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=42.5
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc------------------------------------eEEeeCC
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR------------------------------------ESYNVKR 227 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~------------------------------------~~~~l~~ 227 (540)
+.-.+|+.+..|+-..+-++.++.|+=++.++.|... ....|++
T Consensus 136 ~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~p 215 (251)
T PF13621_consen 136 WIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEP 215 (251)
T ss_dssp EEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEET
T ss_pred EEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECC
Confidence 3344455555555447789999999999999988621 1138999
Q ss_pred CcEEEECCCCeEEEEeC
Q 040805 228 GDIIRVPSGNTFYVTNT 244 (540)
Q Consensus 228 GDv~~iPaG~~h~~~N~ 244 (540)
||+++||+|..|++.|.
T Consensus 216 GD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 216 GDVLFIPPGWWHQVENL 232 (251)
T ss_dssp T-EEEE-TT-EEEEEES
T ss_pred CeEEEECCCCeEEEEEc
Confidence 99999999999999998
No 110
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.72 E-value=4.7 Score=41.67 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=45.7
Q ss_pred eeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeC-CCCccEEEEEE
Q 040805 185 IANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNT-DDDEKLYIVKF 255 (540)
Q Consensus 185 ~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~-g~~e~l~~v~i 255 (540)
.+.||..+.||=| +-+-|.||++|+.+-.= .-...-.+++|||-..-|| +.|.=.|. ..+.+|..+=+
T Consensus 50 ~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD---S~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 50 VLAPGRGFPPHPHRGLETVTYVLDGEIEHRD---SLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred cccCCCcCCCCCCCCcEEEEEEEccEEEEee---cCCceeeecccceeEEcCCCceeecccCCccCCCccceeee
Confidence 5688887777744 67888999999864321 1223467899999888877 57777775 23345555433
No 111
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=94.22 E-value=0.085 Score=49.79 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=45.5
Q ss_pred CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 385 AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 385 gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
.++.+|-|.+ .+|-|++.|.|++-|-+-+. +=++--+..||++++|+|.-|-...+
T Consensus 84 ~FfEEhlh~d-eeiR~il~GtgYfDVrd~dd----------------------~WIRi~vekGDlivlPaGiyHRFTtt 139 (179)
T KOG2107|consen 84 SFFEEHLHED-EEIRYILEGTGYFDVRDKDD----------------------QWIRIFVEKGDLIVLPAGIYHRFTTT 139 (179)
T ss_pred HHHHHhcCch-hheEEEeecceEEeeccCCC----------------------CEEEEEEecCCEEEecCcceeeeecC
Confidence 4688999865 48999999999998877654 34455689999999999999976655
No 112
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.04 E-value=0.26 Score=46.03 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=46.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.|++.+....+ ..--|..+-+++-||++|+..|.+-. +++ .-.+|||++|
T Consensus 99 ~l~aG~m~~~~---~tf~wtl~yDe~d~VlEGrL~V~~~g-------------------------~tv--~a~aGDvifi 148 (176)
T COG4766 99 RLGAGLMEMKN---TTFPWTLNYDEIDYVLEGRLHVRIDG-------------------------RTV--IAGAGDVIFI 148 (176)
T ss_pred ccccceeeecc---ccCcceecccceeEEEeeeEEEEEcC-------------------------CeE--ecCCCcEEEe
Confidence 47788888888 33457789999999999988775322 233 2569999999
Q ss_pred CCCCeEEEEecC
Q 040805 453 PAGHPVVTVASQ 464 (540)
Q Consensus 453 PaG~~h~~~n~~ 464 (540)
|.|.-+-+-..+
T Consensus 149 PKgssIefst~g 160 (176)
T COG4766 149 PKGSSIEFSTTG 160 (176)
T ss_pred cCCCeEEEeccc
Confidence 999998765543
No 113
>PLN02288 mannose-6-phosphate isomerase
Probab=94.04 E-value=0.87 Score=49.29 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=39.9
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+.++..+.+.++.-.. ....+.+.|++|++|++.+.. ..+ .....|++|++++|
T Consensus 333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~~--~~~-----------------------~~~~~l~~G~~~fv 386 (394)
T PLN02288 333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLST--GSS-----------------------EDGTAAKRGDVFFV 386 (394)
T ss_pred ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEec--CCc-----------------------cceEEEeceeEEEE
Confidence 4566777777665321 111467889999999998741 111 11236999999999
Q ss_pred CCCCeE
Q 040805 453 PAGHPV 458 (540)
Q Consensus 453 PaG~~h 458 (540)
|++...
T Consensus 387 ~a~~~~ 392 (394)
T PLN02288 387 PAGTEI 392 (394)
T ss_pred eCCCcc
Confidence 998754
No 114
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=93.38 E-value=0.3 Score=51.25 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=38.7
Q ss_pred eCCCc--cccccccCCCeEEEEEeeEEEEEEEecC------C-------------ceEEeeCCCcEEEECCCCeEEEEeC
Q 040805 186 ANPQT--FVTPTHLDADAVFFVSWGQGTITVIREN------N-------------RESYNVKRGDIIRVPSGNTFYVTNT 244 (540)
Q Consensus 186 l~Pgg--l~~Ph~~~A~ei~yV~~G~g~ig~V~~~------~-------------~~~~~l~~GDv~~iPaG~~h~~~N~ 244 (540)
+.|++ -+.|||=+.+-+++=+.|+=+..+-.+. . ...+.|++||+++||+|++|+....
T Consensus 120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~ 199 (319)
T PF08007_consen 120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT 199 (319)
T ss_dssp EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence 45555 4577776666666667776565655421 0 1247999999999999999999998
Q ss_pred CCCccEEE
Q 040805 245 DDDEKLYI 252 (540)
Q Consensus 245 g~~e~l~~ 252 (540)
+ ..+.+
T Consensus 200 ~--~S~hl 205 (319)
T PF08007_consen 200 D--PSLHL 205 (319)
T ss_dssp S---EEEE
T ss_pred C--CceEE
Confidence 7 34544
No 115
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=93.21 E-value=0.92 Score=43.70 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=61.3
Q ss_pred ceeecCCceEEEeccCcccccccc--cc--ccceeeeeeeCCCccccccccCC----CeEEEEEeeEEEEEEEecC----
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GL--EKYRLGILIANPQTFVTPTHLDA----DAVFFVSWGQGTITVIREN---- 218 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi--~~~rl~~~~l~Pggl~~Ph~~~A----~ei~yV~~G~g~ig~V~~~---- 218 (540)
.++..+-|.+..+ |... .|. |+ ......+..-.+|.++-.|++.. ..+++|++|+...-+|+-.
T Consensus 15 ~~~~D~RG~f~e~--f~~~--~~~~~~~~~~~~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~Sp 90 (176)
T PF00908_consen 15 KVFPDERGYFMET--FRED--EFAEAGLPPEFVQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSP 90 (176)
T ss_dssp EEEEETTEEEEEE--EEHH--HHHHHHSST-EEEEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTST
T ss_pred ceeccCCEeEehH--hhhH--HHHHhccccccCceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCC
Confidence 4566677777776 5543 221 11 11223333445688988998643 5899999999999999832
Q ss_pred ---CceEEeeCCCc--EEEECCCCeEEEEeCCC
Q 040805 219 ---NRESYNVKRGD--IIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 219 ---~~~~~~l~~GD--v~~iPaG~~h~~~N~g~ 246 (540)
...++.|.+++ .++||+|++|-+.+..+
T Consensus 91 Tfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d 123 (176)
T PF00908_consen 91 TFGKWVSVELSAENPRQLYIPPGVAHGFQTLED 123 (176)
T ss_dssp TTT-EEEEEEETTT--EEEE-TTEEEEEEESSS
T ss_pred CCCEEEEEEeCccccCEEEeCCcceeeEEeccC
Confidence 22467886665 79999999999999863
No 116
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=93.12 E-value=1.4 Score=42.58 Aligned_cols=62 Identities=8% Similarity=-0.048 Sum_probs=49.6
Q ss_pred eeCCCcccccccc---CCCeEEEEEeeEEEEEEEecC-------CceEEeeCC--CcEEEECCCCeEEEEeCCC
Q 040805 185 IANPQTFVTPTHL---DADAVFFVSWGQGTITVIREN-------NRESYNVKR--GDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 185 ~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~-------~~~~~~l~~--GDv~~iPaG~~h~~~N~g~ 246 (540)
.-.+|.++-.|++ .-..+++|+.|+...-+|+.. ....+.|.+ +-.++||+|+.|-+.+.++
T Consensus 50 ~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d 123 (176)
T TIGR01221 50 KSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSD 123 (176)
T ss_pred EecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCC
Confidence 4477888888885 268999999999999999853 113567765 6699999999999999874
No 117
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=92.66 E-value=14 Score=38.18 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=40.5
Q ss_pred cccccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC-CCccEEEE
Q 040805 191 FVTPTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD-DDEKLYIV 253 (540)
Q Consensus 191 l~~Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g-~~e~l~~v 253 (540)
+-.+.+....|+ +..+.|+++|.+ +.+++.|.+.|.++||.|...+..... ...++++.
T Consensus 65 ~~~~~fl~rrE~giV~lgG~~~V~v----dG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~ 125 (276)
T PRK00924 65 LGVSYFLERRELGIINIGGAGTVTV----DGETYELGHRDALYVGKGAKEVVFASADAANPAKFY 125 (276)
T ss_pred ccceeecCCcEEEEEEccceEEEEE----CCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence 334455666665 677888888886 446788999999999999886666422 12355554
No 118
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=92.44 E-value=1.7 Score=41.71 Aligned_cols=81 Identities=15% Similarity=0.040 Sum_probs=54.6
Q ss_pred cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc---------eEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805 178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR---------ESYNVKRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~---------~~~~l~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
.+-+.++.-.||....+|=| .+..++.|++|...-........ ....+..|.+++++.+.+|-+.|.+.+
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 45566778999999888856 58889999999988877654322 234578888889999999999998756
Q ss_pred ccEEEEEEeec
Q 040805 248 EKLYIVKFIKS 258 (540)
Q Consensus 248 e~l~~v~i~~~ 258 (540)
++++-|=++.|
T Consensus 154 ~~avSLHvYsp 164 (175)
T PF05995_consen 154 EPAVSLHVYSP 164 (175)
T ss_dssp S-EEEEEEEES
T ss_pred CCEEEEEEcCC
Confidence 66665555533
No 119
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=92.23 E-value=0.56 Score=50.98 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=34.0
Q ss_pred cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.|.++++||.+|++++.. .--...+++||+++||+|+.+.+.=.+ +++.+.+
T Consensus 144 aDGD~Li~~q~G~l~l~T----e~G~L~v~pGd~~VIPRG~~~rv~l~~---p~rgyi~ 195 (424)
T PF04209_consen 144 ADGDELIFPQQGSLRLET----EFGRLDVRPGDYVVIPRGTRFRVELPG---PARGYII 195 (424)
T ss_dssp SSEEEEEEEEES-EEEEE----TTEEEEE-TTEEEEE-TT--EEEE-SS---SEEEEEE
T ss_pred CCCCEEEEEEECCEEEEe----cCeeEEEcCCeEEEECCeeEEEEEeCC---CceEEEE
Confidence 378999999999997764 122467999999999999999886653 4555433
No 120
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=91.86 E-value=0.58 Score=50.87 Aligned_cols=79 Identities=10% Similarity=0.140 Sum_probs=47.6
Q ss_pred CCCCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEee
Q 040805 364 NDFRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS 442 (540)
Q Consensus 364 ~~~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (540)
..-|.++. ||++.....+ .+| -.-.+|.++++++||-+|++++.-.. -.+
T Consensus 116 ~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~-------------------------G~L-- 166 (424)
T PF04209_consen 116 AGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETEF-------------------------GRL-- 166 (424)
T ss_dssp ECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEETT-------------------------EEE--
T ss_pred CccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEecC-------------------------eeE--
Confidence 33444433 5555444433 455 56677999999999999999987333 234
Q ss_pred eeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 443 RIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 443 ~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
.+++||++|||+|..+.+.-. .+.....+
T Consensus 167 ~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 167 DVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp EE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred EEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 599999999999999887655 35555444
No 121
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=91.84 E-value=0.79 Score=43.39 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=43.0
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEec-C------CceEEeeCCCcEEEECCCCeEEEEeCCCCccE
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE-N------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKL 250 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~-~------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l 250 (540)
..++.+..+.||+...||.-..... =+..++++.| . +.+++..++|.+|++=....|+..|.++. -
T Consensus 79 ~~~~~~s~l~pg~~I~pH~d~~~~~-----lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~--~ 151 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKPHRDPTNLR-----LRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDE--D 151 (163)
T ss_dssp CEEEEEEEEECTEEEEEE-SS-TTE-----EEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS---
T ss_pred hhhEEEEEECCCCEECCeeCCCCcc-----eEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCC--C
Confidence 3456777889999999997322211 1333444443 2 34678999999999999999999999854 3
Q ss_pred EEEEEe
Q 040805 251 YIVKFI 256 (540)
Q Consensus 251 ~~v~i~ 256 (540)
+++.++
T Consensus 152 Rv~L~v 157 (163)
T PF05118_consen 152 RVVLIV 157 (163)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 344344
No 122
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=91.69 E-value=0.18 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEeeCCCcEEEECCCCeEEEEeCCC
Q 040805 222 SYNVKRGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 222 ~~~l~~GDv~~iPaG~~h~~~N~g~ 246 (540)
...-++||+|++|+|+.|++.|.|.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cceECCCCEEEECCCceEEEEeCCc
Confidence 4578999999999999999999984
No 123
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.67 E-value=0.74 Score=48.73 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=49.9
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
..+.+-.+.+.+|....--..+.+.|+.|++|+|++.. +......|.+|||++|||.+...+..++ +++.++
T Consensus 331 ~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~---~t~~~~~v~rG~V~fI~a~~~i~~~~~s--d~~~~y 402 (411)
T KOG2757|consen 331 EEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKT---DTDSKILVNRGDVLFIPANHPIHLSSSS--DPFLGY 402 (411)
T ss_pred cceeEEEeecCCCceEEeecCCCceEEEEEecceEEec---CCCCceeeccCcEEEEcCCCCceeeccC--cceeee
Confidence 33444444667765533334678899999999998775 2245678999999999999888665543 345443
No 124
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=91.56 E-value=1.2 Score=44.17 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=56.0
Q ss_pred EEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 376 VSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 376 v~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
=..+++.|+| --.|.=.++|..++||++|+..+.+-. ++ +.|++|+-.++|+
T Consensus 63 qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G-------------------------~t--h~l~eggyaylPp 115 (264)
T COG3257 63 QYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG-------------------------KT--HALREGGYAYLPP 115 (264)
T ss_pred hheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC-------------------------eE--EEeccCCeEEeCC
Confidence 3467887877 667777789999999999988776422 12 4799999999999
Q ss_pred CCeEEEEecCCCCEEEEEE
Q 040805 455 GHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 455 G~~h~~~n~~~e~l~~v~F 473 (540)
|..+...|...++..|-.+
T Consensus 116 gs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 116 GSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred CCcceEeeccCCceEEEEE
Confidence 9999999887777776655
No 125
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=90.91 E-value=1.3 Score=41.40 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=38.8
Q ss_pred EEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805 379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV 458 (540)
Q Consensus 379 ~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h 458 (540)
+.=.|+.-.-=|+| -+.|+.|-++|...+.|+..+. .-+-.+++||+|.+|++.||
T Consensus 38 vVGGPN~R~DyHin-e~eE~FyQ~kG~m~Lkv~e~g~-----------------------~kdi~I~EGe~fLLP~~vpH 93 (151)
T PF06052_consen 38 VVGGPNQRTDYHIN-ETEEFFYQLKGDMCLKVVEDGK-----------------------FKDIPIREGEMFLLPANVPH 93 (151)
T ss_dssp EEESSB--SSEEE--SS-EEEEEEES-EEEEEEETTE-----------------------EEEEEE-TTEEEEE-TT--E
T ss_pred EEcCCCCCCccccC-CcceEEEEEeCcEEEEEEeCCc-----------------------eEEEEeCCCcEEecCCCCCC
Confidence 33456666666775 3668999999999999998632 22458999999999999999
Q ss_pred EEEec
Q 040805 459 VTVAS 463 (540)
Q Consensus 459 ~~~n~ 463 (540)
.=.-.
T Consensus 94 sP~R~ 98 (151)
T PF06052_consen 94 SPQRP 98 (151)
T ss_dssp EEEE-
T ss_pred CCcCC
Confidence 86544
No 126
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.81 E-value=1.7 Score=46.12 Aligned_cols=67 Identities=18% Similarity=0.352 Sum_probs=48.9
Q ss_pred cceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 373 DITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
+..+-.+++..|.- ..|.- +...|..|++|+|++..-. + .. ..+++|||++
T Consensus 332 eF~v~~~~v~~g~~~~~~~~--~~~SIllv~~G~g~l~~~t--~----------------------~~--~~v~rG~V~f 383 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGV--DGPSILLVLKGSGILKTDT--D----------------------SK--ILVNRGDVLF 383 (411)
T ss_pred ceeEEEeecCCCceEEeecC--CCceEEEEEecceEEecCC--C----------------------Cc--eeeccCcEEE
Confidence 36677777777765 45554 7888999999999997432 1 11 2589999999
Q ss_pred ECCCCeEEEEecCCCCE
Q 040805 452 VPAGHPVVTVASQNNNL 468 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l 468 (540)
||+.++..+.++ ++.+
T Consensus 384 I~a~~~i~~~~~-sd~~ 399 (411)
T KOG2757|consen 384 IPANHPIHLSSS-SDPF 399 (411)
T ss_pred EcCCCCceeecc-Ccce
Confidence 999999976655 4443
No 127
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.81 E-value=1 Score=48.63 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=42.9
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT 242 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~ 242 (540)
.+.+..+.+.++...++. +...|++|++|++++.. +..++.|++|++++||++...+..
T Consensus 320 ~F~~~~~~l~~~~~~~~~--~~~~Illv~~G~~~i~~----~~~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTTLSQ--QSAAILFCVEGEAVLWK----GEQQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEEecC--CCcEEEEEEcceEEEEe----CCeEEEECCCCEEEEeCCCccEEE
Confidence 345555566655443432 57799999999998753 345688999999999998876665
No 128
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=90.70 E-value=1.7 Score=37.44 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=40.9
Q ss_pred EEEcCCCcccccccCCCcE--EEEEE--eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 379 ANISKGAMAAPFYNSRSTK--VAVVV--AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 379 ~~L~pggm~~PH~h~~A~e--i~yV~--~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
....+|+...+|.|++|.- +.||- .+.+.+.+..|.......... ............+....++||++++|+
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPF----DNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS--------TTTTCCC-SEEEE---TTEEEEEET
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccc----cccccCcccCceEEeCCCCCEEEEeCC
Confidence 3456889999999999864 44443 244556666665421000000 000000011134446789999999999
Q ss_pred CCeEEEEe-cCCCCEEEEEEE
Q 040805 455 GHPVVTVA-SQNNNLEVVCFE 474 (540)
Q Consensus 455 G~~h~~~n-~~~e~l~~v~F~ 474 (540)
-..|.... .++++-.-|+|+
T Consensus 81 ~l~H~v~p~~~~~~RisisfN 101 (101)
T PF13759_consen 81 WLWHGVPPNNSDEERISISFN 101 (101)
T ss_dssp TSEEEE----SSS-EEEEEEE
T ss_pred CCEEeccCcCCCCCEEEEEcC
Confidence 99998754 334344446663
No 129
>PF12852 Cupin_6: Cupin
Probab=90.47 E-value=0.95 Score=43.21 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=33.9
Q ss_pred CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 395 STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 395 A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
...+.+|++|.+++.+-.. + .. ..|++||++++|+|.+|++..+
T Consensus 35 ~~~fh~V~~G~~~l~~~~~-~----------------------~~--~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGG-G----------------------EP--IRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred ceEEEEEECCeEEEEEcCC-C----------------------Ce--EEecCCCEEEEcCCCCeEeCCC
Confidence 3678899999999984331 1 12 3699999999999999998544
No 130
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=90.43 E-value=1.1 Score=44.08 Aligned_cols=94 Identities=11% Similarity=0.071 Sum_probs=49.5
Q ss_pred EEEEcCCCcccccccCCCcE--EEEEE--eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 378 YANISKGAMAAPFYNSRSTK--VAVVV--AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~~A~e--i~yV~--~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
.+.+.+||...+|.||++.- +.||. .|.|.+.+..|....--..-.+. ...+.... ..+...-++||++++|
T Consensus 100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~--~~~~~~~~--~~~~v~P~~G~lvlFP 175 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRI--PNAKRAVQ--RFVYVPPQEGRVLLFE 175 (201)
T ss_pred EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhcccccc--CccccccC--ccEEECCCCCeEEEEC
Confidence 34557899999999999843 44544 23344444444321000000000 00000000 1122356999999999
Q ss_pred CCCeEEEEe-cCCCCEEEEEEEe
Q 040805 454 AGHPVVTVA-SQNNNLEVVCFEI 475 (540)
Q Consensus 454 aG~~h~~~n-~~~e~l~~v~F~~ 475 (540)
.-+.|.... .+++.-.-|+|+.
T Consensus 176 S~L~H~v~p~~~~~~RISiSFNl 198 (201)
T TIGR02466 176 SWLRHEVPPNESEEERISVSFNY 198 (201)
T ss_pred CCCceecCCCCCCCCEEEEEEee
Confidence 999997654 3444444477854
No 131
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.18 Score=54.87 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=44.8
Q ss_pred CCCcc-ccccccCCCeEEEEEeeEEEEEEEecCCce---------------------EEeeCCCcEEEECCCCeEEEEe
Q 040805 187 NPQTF-VTPTHLDADAVFFVSWGQGTITVIRENNRE---------------------SYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 187 ~Pggl-~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~---------------------~~~l~~GDv~~iPaG~~h~~~N 243 (540)
.||+- +.|||-+-+..+.=++|+-..-+-.|..+. .+.|++||+++||+|++|--.-
T Consensus 325 PagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 45543 589999988888889999888887776331 1489999999999999998644
No 132
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=89.92 E-value=3.4 Score=39.79 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=48.0
Q ss_pred CCCccccccccC-C-CeEEEEEeeEEEEEEEecCCc-------eEEeeCC--CcEEEECCCCeEEEEeCCCC
Q 040805 187 NPQTFVTPTHLD-A-DAVFFVSWGQGTITVIRENNR-------ESYNVKR--GDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 187 ~Pggl~~Ph~~~-A-~ei~yV~~G~g~ig~V~~~~~-------~~~~l~~--GDv~~iPaG~~h~~~N~g~~ 247 (540)
.||.++--||+. - .+++.|+.|++..-+|+-... ....|.+ .-++.||+|++|-+.|.+++
T Consensus 53 ~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~ 124 (173)
T COG1898 53 YPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDD 124 (173)
T ss_pred cCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCc
Confidence 399998888864 3 699999999999999985422 2335544 48999999999999999854
No 133
>PF14861 Antimicrobial21: Plant antimicrobial peptide
Probab=89.88 E-value=0.38 Score=33.14 Aligned_cols=27 Identities=30% Similarity=0.802 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHH
Q 040805 30 LKQCKHQCRARQQYDEKQKEQCARTCEEY 58 (540)
Q Consensus 30 ~~~c~~~c~~~~~~~~~~~~~c~~~c~~~ 58 (540)
-..|.++|+... |.-.|++|++.|+.+
T Consensus 4 ~~~C~k~Cqhh~--D~~~kq~Cv~~C~rr 30 (31)
T PF14861_consen 4 RDRCRKQCQHHR--DPWRKQQCVQDCRRR 30 (31)
T ss_pred chHHHHHhhccc--CHHHHHHHHHHHHhc
Confidence 457999996654 888899999999864
No 134
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=88.79 E-value=2.3 Score=46.39 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=48.3
Q ss_pred cceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 373 DITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
|+++.....+. +| -.-.+|.++++++|+-+|.+.+.--.- ++ .+++||++|
T Consensus 132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG-------------------------~L--~v~pgei~V 183 (438)
T PRK05341 132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATELG-------------------------VL--DVEPGEIAV 183 (438)
T ss_pred ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEecc-------------------------ce--EecCCCEEE
Confidence 56666555555 66 677789999999999999999874432 23 689999999
Q ss_pred ECCCCeEEEEe
Q 040805 452 VPAGHPVVTVA 462 (540)
Q Consensus 452 VPaG~~h~~~n 462 (540)
||+|..+.+.-
T Consensus 184 IPRG~~frv~l 194 (438)
T PRK05341 184 IPRGVKFRVEL 194 (438)
T ss_pred EcCccEEEEec
Confidence 99999987663
No 135
>PLN02288 mannose-6-phosphate isomerase
Probab=88.47 E-value=0.99 Score=48.87 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=43.1
Q ss_pred cccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeE
Q 040805 176 LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTF 239 (540)
Q Consensus 176 i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h 239 (540)
+..+.+..+.+.++......-.+.+.|++|++|++++.. .+...+..|++|++++||++...
T Consensus 331 ~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~~~~~~l~~G~~~fv~a~~~~ 392 (394)
T PLN02288 331 FDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSSEDGTAAKRGDVFFVPAGTEI 392 (394)
T ss_pred CcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCccceEEEeceeEEEEeCCCcc
Confidence 455667777887775322111567899999999998753 22223477999999999998653
No 136
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=87.90 E-value=2.4 Score=43.30 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=42.7
Q ss_pred ceeeeeeeCCCccc-cccc---c--CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 179 YRLGILIANPQTFV-TPTH---L--DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 179 ~rl~~~~l~Pggl~-~Ph~---~--~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
++++.+...|..+. .+.+ . +.-.++++++|.+.+.. +...+.|.+||++++|++.+|.+.-.+
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~----~g~~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ----DDRQVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE----CCeEEEEcCCCEEEEECCCCcEeecCC
Confidence 44544566776443 2232 1 22345678899888776 456789999999999999999876544
No 137
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=87.87 E-value=2.7 Score=45.77 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=48.5
Q ss_pred cceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 373 DITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
||++.....+. +| -.-.+|.++++++|+-+|.+.+.--.- ++ .|++||++|
T Consensus 126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG-------------------------~L--~v~pgei~V 177 (429)
T TIGR01015 126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEFG-------------------------RL--LVEPNEICV 177 (429)
T ss_pred CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEecc-------------------------ce--EecCCCEEE
Confidence 56665555554 67 677889999999999999999874332 22 589999999
Q ss_pred ECCCCeEEEEec
Q 040805 452 VPAGHPVVTVAS 463 (540)
Q Consensus 452 VPaG~~h~~~n~ 463 (540)
||+|..+.+.-.
T Consensus 178 IPRG~~frv~l~ 189 (429)
T TIGR01015 178 IPRGVRFRVTVL 189 (429)
T ss_pred ecCccEEEEeeC
Confidence 999999876544
No 138
>PLN02658 homogentisate 1,2-dioxygenase
Probab=87.85 E-value=2.7 Score=45.77 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805 366 FRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI 444 (540)
Q Consensus 366 ~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 444 (540)
-|.++. ||++.....+. +| -.-.+|.++++++|+-+|.+.+.--.- ++ .|
T Consensus 119 D~~~~~-G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG-------------------------~L--~v 169 (435)
T PLN02658 119 SPFLRH-GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTELG-------------------------KL--QV 169 (435)
T ss_pred Cccccc-CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEecc-------------------------ce--Ee
Confidence 344432 66665555444 66 455889999999999999999874432 23 58
Q ss_pred CCCcEEEECCCCeEEEE
Q 040805 445 RTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 445 ~~GDV~vVPaG~~h~~~ 461 (540)
++||++|||+|..+.+.
T Consensus 170 ~pgei~VIPRG~~frv~ 186 (435)
T PLN02658 170 SPGEIVVIPRGFRFAVD 186 (435)
T ss_pred cCCCEEEecCccEEEEe
Confidence 99999999999998765
No 139
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=87.73 E-value=1.4 Score=38.53 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=41.5
Q ss_pred eeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 184 LIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 184 ~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
+.|+||+-+ +|.-...+.++||++|.+.++ +. ...|.+|+++++..|....+.+.+ +..+++
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~----~~--~~~~~~~~~~~l~~g~~i~~~a~~--~~a~~l 66 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEVG----GE--EDPLEAGQLVVLEDGDEIELTAGE--EGARFL 66 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEESEEEET----TT--TEEEETTEEEEE-SECEEEEEESS--SSEEEE
T ss_pred EEECCCCEEEeecCCCCEEEEEEEECcEEEC----CC--cceECCCcEEEECCCceEEEEECC--CCcEEE
Confidence 478999754 443345678999999997543 11 267999999999998888888874 344444
No 140
>PLN02658 homogentisate 1,2-dioxygenase
Probab=87.40 E-value=1.8 Score=47.05 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=39.8
Q ss_pred eeCCCcccccc-c--cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 185 IANPQTFVTPT-H--LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 185 ~l~Pggl~~Ph-~--~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
...++...... + .|.++++|+.+|.+.|..-. + ...|++||+++||+|+.+.+.=
T Consensus 130 iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L~v~pgei~VIPRG~~frv~l 187 (435)
T PLN02658 130 MYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTEL--G--KLQVSPGEIVVIPRGFRFAVDL 187 (435)
T ss_pred EEeCCCCCccceeecCCCCEEEEEEeCCEEEEEec--c--ceEecCCCEEEecCccEEEEec
Confidence 33555443233 2 47899999999999776521 1 3578999999999999988754
No 141
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=86.54 E-value=2.4 Score=33.95 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=43.5
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
+.|.||..+.. ...+...+-|.+|+.-++. .+....+-|.+||.+.+|+|--.|+..
T Consensus 2 ~~L~~g~~~~l-r~~~~~~l~v~~G~vWlT~--~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSL-RAAAGQRLRVESGRVWLTR--EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEe-EcCCCcEEEEccccEEEEC--CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 46677765333 3445555999999998887 456677899999999999999888865
No 142
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=85.27 E-value=1.6 Score=42.98 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=43.7
Q ss_pred cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
...+||+|-.+|...+-+|..+..+...+++||++.+|+.++|.-+--.
T Consensus 51 eegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa 99 (279)
T KOG3995|consen 51 EEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA 99 (279)
T ss_pred CCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc
Confidence 3689999999999999999999888899999999999999999865443
No 143
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=84.67 E-value=3.7 Score=42.69 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=42.0
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
..+.+..+.+... .... -.+...+++|++|++++.. ...++.|++|++++|||+...+...
T Consensus 233 ~~F~~~~~~~~~~-~~~~-~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 233 EYFSVYKWDISGK-AEFI-QQQSALILSVLEGSGRIKS----GGKTLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred CCeEEEEEEeCCc-eeec-cCCCcEEEEEEcceEEEEE----CCEEEEEecccEEEEccCCccEEEE
Confidence 3444555566543 2111 1357789999999998753 3457889999999999998666554
No 144
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=22 Score=33.43 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=50.3
Q ss_pred eeeCCCcccccccc--CCCeEEEEEee-EEEEEEEecCCceEE----eeCCCcE--EEECCCCeEEE-EeCCCCccEEEE
Q 040805 184 LIANPQTFVTPTHL--DADAVFFVSWG-QGTITVIRENNRESY----NVKRGDI--IRVPSGNTFYV-TNTDDDEKLYIV 253 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~--~A~ei~yV~~G-~g~ig~V~~~~~~~~----~l~~GDv--~~iPaG~~h~~-~N~g~~e~l~~v 253 (540)
+-|+++.+ -||| +|++|.+...| ...+.++.+|...++ +|+.|.+ ++||+|+-..- .-.|++ ..-+=
T Consensus 49 yLLe~~~~--s~~HRv~a~eiwHf~ag~pl~~~l~~dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~~-~tLVg 125 (162)
T COG3542 49 YLLEEDNI--SAWHRVTADEIWHFYAGAPLELHLSEDGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGED-YTLVG 125 (162)
T ss_pred EEecCCcc--chheecchhheEEEecCCceEEEEEeCCCeEEEEecccccCCceeEEEEeCCcEEEEEEecCCC-ceEEE
Confidence 45677763 4454 58999888877 578888887766665 6788876 78999954322 122212 22222
Q ss_pred EEeecCCCCC-cccccccCC
Q 040805 254 KFIKSINLPG-QYEAFYGAG 272 (540)
Q Consensus 254 ~i~~~~~~pg-~~~~f~LaG 272 (540)
|... || .|..|-||-
T Consensus 126 CtVa----PGFdF~~Fela~ 141 (162)
T COG3542 126 CTVA----PGFDFEDFELAE 141 (162)
T ss_pred EEec----CCccchhccccC
Confidence 3332 55 477787774
No 145
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=84.20 E-value=1.7 Score=46.25 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceE--EEEEEcCCCCCCcccccccCCCccccCCccceEEeee
Q 040805 366 FRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG--YIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSR 443 (540)
Q Consensus 366 ~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g--~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (540)
+|.-+.-++.|+ -..+||-+.|||-+ -=+|+++|.| |..|-.+-.... -.. ..- -.....-+-.++..
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~---YDVfliQg~G~RRW~v~~~~~~~~-~~~-~~d---~~~~~~f~~~~d~v 182 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQ---YDVFLIQGQGRRRWRVGKKCNMST-LCP-HPD---LLILAPFEPDIDEV 182 (383)
T ss_pred CccccccceEEE--EecCCCccCccccc---hheeEEeecccceeecCCcccccC-cCC-Ccc---hhhcCCCCchhhhh
Confidence 566666677777 56799999999943 3356667655 555544422110 000 000 00000111234556
Q ss_pred eCCCcEEEECCCCeEEEEecCCCCEEE-EEE
Q 040805 444 IRTDSAYIVPAGHPVVTVASQNNNLEV-VCF 473 (540)
Q Consensus 444 l~~GDV~vVPaG~~h~~~n~~~e~l~~-v~F 473 (540)
|.+|||++||+|++|+=++- ++-+.+ |+|
T Consensus 183 lepGDiLYiPp~~~H~gvae-~dc~tySvG~ 212 (383)
T COG2850 183 LEPGDILYIPPGFPHYGVAE-DDCMTYSVGF 212 (383)
T ss_pred cCCCceeecCCCCCcCCccc-ccccceeeec
Confidence 89999999999999998887 444555 455
No 146
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=83.57 E-value=11 Score=32.70 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=44.8
Q ss_pred eeeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 183 ILIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+-.|.||.. ++ ..+.|+.-|++|...+-+ |+...-..+.+|+.|.||++.-+-+.-. +...++|.+
T Consensus 27 lGVm~pGeY---~F~T~~~E~M~vvsG~l~V~l--pg~~ew~~~~aGesF~VpanssF~v~v~---~~~~Y~C~y 93 (94)
T PF06865_consen 27 LGVMLPGEY---TFGTSAPERMEVVSGELEVKL--PGEDEWQTYSAGESFEVPANSSFDVKVK---EPTAYLCSY 93 (94)
T ss_dssp EEEE-SECE---EEEESS-EEEEEEESEEEEEE--TT-SS-EEEETT-EEEE-TTEEEEEEES---S-EEEEEEE
T ss_pred EEEEeeeEE---EEcCCCCEEEEEEEeEEEEEc--CCCcccEEeCCCCeEEECCCCeEEEEEC---cceeeEEEe
Confidence 334566652 22 478999999999997777 7666667899999999999999998775 356677654
No 147
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.16 E-value=0.89 Score=49.65 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=50.5
Q ss_pred EEEEEcCCCc--ccccccCCCcEEEEEEeceEEEEEEcCCCCCC-----cccccccCCCccccCCccceEEeeeeCCCcE
Q 040805 377 SYANISKGAM--AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS-----SSERRHQGSSTREEGSATYHKVSSRIRTDSA 449 (540)
Q Consensus 377 ~~~~L~pggm--~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV 449 (540)
+-+.|+|-|- ++||| -+-...+.=++|+-++.+-.|..+.. || .+- .+++-+ .-++..-|++||+
T Consensus 319 aNvYLTPagSqGfaPHy-DdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS-~Nf----~eedlg--ePV~e~vle~GDl 390 (629)
T KOG3706|consen 319 ANVYLTPAGSQGFAPHY-DDIEAFVLQVEGRKHWRLYHPTVPLEELALVSS-DNF----TEEDLG--EPVHEFVLEPGDL 390 (629)
T ss_pred cceeecCCCCCCCCCch-hhhhhhhheeccceeeEeecCCCcHhhhhhccC-CCC----ChhHhC--CchHHhhcCCCcE
Confidence 4456666554 79999 36666777889999999999976520 00 000 011111 1345667999999
Q ss_pred EEECCCCeEEEE
Q 040805 450 YIVPAGHPVVTV 461 (540)
Q Consensus 450 ~vVPaG~~h~~~ 461 (540)
++||+|++|-..
T Consensus 391 lYfPRG~IHQA~ 402 (629)
T KOG3706|consen 391 LYFPRGTIHQAD 402 (629)
T ss_pred EEecCcceeecc
Confidence 999999999643
No 148
>PRK10579 hypothetical protein; Provisional
Probab=82.64 E-value=9.3 Score=33.15 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=48.4
Q ss_pred eeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 185 IANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 185 ~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.|.||.+ ++ .++.|+.=|++|...+-+ |+...-..+++|+.|-||++..+-+.... ...++|.+
T Consensus 29 Vm~pGey---~F~T~~~E~MeivsG~l~V~L--pg~~ew~~~~aG~sF~VpanssF~l~v~~---~t~Y~C~y 93 (94)
T PRK10579 29 VMAEGEY---TFSTAEPEEMTVISGALNVLL--PGATDWQVYEAGEVFNVPGHSEFHLQVAE---PTSYLCRY 93 (94)
T ss_pred EEeeeEE---EEcCCCcEEEEEEeeEEEEEC--CCCcccEEeCCCCEEEECCCCeEEEEECc---ceeeEEEc
Confidence 4556552 23 479999999999997776 66666678999999999999999887743 46666643
No 149
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=82.60 E-value=19 Score=33.37 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=57.6
Q ss_pred cCCceEEEeccCcccccc--cc-ccccceeeeeeeCCCccccccccCCCeEEEEEee-EEEEEEEecCCceE-Ee----e
Q 040805 155 SQHGRVAFLPKFTQRSKL--LR-GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWG-QGTITVIRENNRES-YN----V 225 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~--L~-Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G-~g~ig~V~~~~~~~-~~----l 225 (540)
.|+|.++.+-+.+..... .. .=..+-.-++-|.++.+..-|-.+++|+.|...| ..++-++.|++... .. +
T Consensus 14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~ 93 (139)
T PF06172_consen 14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDL 93 (139)
T ss_dssp TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTT
T ss_pred CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCC
Confidence 378888887433221110 00 0112223344577777766666699999999988 68888898886643 33 3
Q ss_pred CCCc--EEEECCCCeEEEEeCCCCccEEEEE
Q 040805 226 KRGD--IIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 226 ~~GD--v~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
.+|. .++||+|+-+.-...+. ....+|.
T Consensus 94 ~~g~~~q~vVp~G~W~aa~l~~~-~~y~Lvs 123 (139)
T PF06172_consen 94 AAGERPQVVVPAGTWQAAELEPE-GDYSLVS 123 (139)
T ss_dssp CTTEBSEEEE-TTSEEEEEECES-SSEEEEE
T ss_pred CCCceEEEEECCCEEEEccccCC-CCEEEEE
Confidence 4553 68999999877744332 2454543
No 150
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=81.73 E-value=11 Score=35.53 Aligned_cols=80 Identities=9% Similarity=0.128 Sum_probs=47.7
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC-CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP-HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
..+....|.||+...||.-+....+ +..+.++.| .+. .-+-+. +. ...++|.++++
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~~l------R~Hl~L~~p~~~~---~~~v~~------------~~--~~w~~G~~~~f 136 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNLRL------RLHLPLIVPNPGC---YIRVGG------------ET--RHWREGECWVF 136 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TTEE------EEEEEEC--STTE---EEEETT------------EE--EB--CTEEEEE
T ss_pred hhEEEEEECCCCEECCeeCCCCcce------EEEEEEEcCCCCe---EEEECC------------eE--EEeccCcEEEE
Confidence 3478888999999999996654432 244556665 211 000001 22 36799999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
=..++|+..|.++++-.++.++.-
T Consensus 137 D~s~~H~~~N~~~~~Rv~L~vD~~ 160 (163)
T PF05118_consen 137 DDSFEHEVWNNGDEDRVVLIVDFW 160 (163)
T ss_dssp -TTS-EEEEESSSS-EEEEEEEEE
T ss_pred eCCEEEEEEeCCCCCEEEEEEEee
Confidence 999999999988877777777643
No 151
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=81.41 E-value=9.9 Score=33.07 Aligned_cols=67 Identities=9% Similarity=0.107 Sum_probs=45.8
Q ss_pred EEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCC
Q 040805 377 SYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGH 456 (540)
Q Consensus 377 ~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~ 456 (540)
..+.|+||+-+.-...+.-+-++||++|.+.+. .. . ..+.+|+++++..|-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~~-----------------------~---~~~~~~~~~~l~~g~ 52 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---GE-----------------------E---DPLEAGQLVVLEDGD 52 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET---TT-----------------------T---EEEETTEEEEE-SEC
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC---CC-----------------------c---ceECCCcEEEECCCc
Confidence 357888998875444455567999999998662 11 1 358899999999888
Q ss_pred eEEEEecCCCCEEEEEE
Q 040805 457 PVVTVASQNNNLEVVCF 473 (540)
Q Consensus 457 ~h~~~n~~~e~l~~v~F 473 (540)
...+.+.. ++..++.+
T Consensus 53 ~i~~~a~~-~~a~~lll 68 (104)
T PF05726_consen 53 EIELTAGE-EGARFLLL 68 (104)
T ss_dssp EEEEEESS-SSEEEEEE
T ss_pred eEEEEECC-CCcEEEEE
Confidence 88877774 67777766
No 152
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=80.91 E-value=16 Score=30.80 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCccccccccCCCeE--EEEEeeEEEEEEEecCCc---eEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805 188 PQTFVTPTHLDADAV--FFVSWGQGTITVIRENNR---ESYNVKRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 188 Pggl~~Ph~~~A~ei--~yV~~G~g~ig~V~~~~~---~~~~l~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
|.+++-.|...+..| +-|++|+..+...++.+. ....+.+|+..+||+...|.+.-.+++
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 666767776777766 579999999998887543 456789999999999999999987643
No 153
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=80.86 E-value=6.9 Score=34.65 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=42.3
Q ss_pred Ccccccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccEEEEEE
Q 040805 189 QTFVTPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 189 ggl~~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i 255 (540)
.++ .+| |.+-+-|.||++|+..-. +.. .....|++|||-++-|| +.|.-.|.+++.++.++=+
T Consensus 40 ~gf-~~HPH~g~eivTyv~~G~~~H~--Ds~-G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 40 AGF-PMHPHRGFEIVTYVLEGELRHR--DSL-GNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TEE-EEEEECSEEEEEEEEESEEEEE--ETT-SEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCC-CCcCCCCceEEEEEecCEEEEE--CCC-CCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 344 455 446778899999976433 333 34567999999999987 6888899876567877644
No 154
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=80.66 E-value=2.9 Score=36.07 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=19.5
Q ss_pred EEeeeeCCCcEEEECCCCeEEEEecCC
Q 040805 439 KVSSRIRTDSAYIVPAGHPVVTVASQN 465 (540)
Q Consensus 439 ~~~~~l~~GDV~vVPaG~~h~~~n~~~ 465 (540)
..+...++||+++||+|..|+..|.|.
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cccceECCCCEEEECCCceEEEEeCCc
Confidence 344567899999999999999999874
No 155
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=78.73 E-value=5.2 Score=32.17 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=37.1
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEE
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDII 231 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~ 231 (540)
.+.+|..+.......+.++||++|.+.+.....++.. ...+.+||++
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 5677877766666789999999999998888776653 4677888877
No 156
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=78.39 E-value=5.3 Score=40.59 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 393 SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 393 ~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
+++..|.||++|.+.+. .. + +. ..+++||+++||+|.+|.....
T Consensus 47 ~~~~~i~~~~~G~~~~~--~~-~----------------------~~--~~~~~g~~i~i~p~~~h~~~~~ 90 (290)
T PRK10572 47 MKGYILNLTIRGQGVIF--NG-G----------------------RA--FVCRPGDLLLFPPGEIHHYGRH 90 (290)
T ss_pred ccceEEEEEEeccEEEe--cC-C----------------------ee--EecCCCCEEEECCCCceeeccC
Confidence 34557899999999874 22 1 22 3799999999999999976554
No 157
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=76.28 E-value=19 Score=32.72 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 199 A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.-.+.++++|.+.+.. +.....+.+||+++++++.++-+.-.+
T Consensus 55 ~~~l~~~~~G~~~~~~----~g~~~~~~pg~~~l~d~~~~~~~~~~~ 97 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQ----GGREVELAPGDVVLLDPGQPYRLEFSA 97 (172)
T ss_pred EEEEEEEccCCEEEEE----CCEEEEEcCCeEEEEcCCCCEEEEECC
Confidence 3345566677776665 456889999999999999998876654
No 158
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=75.85 E-value=46 Score=30.84 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=53.3
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEec-eEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCC--cE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAG-DGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTD--SA 449 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G-~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--DV 449 (540)
-++..+.-|+++.+..-|=. +++||-+...| ..++-++.|++.. .-.++-.++.+| =.
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~------------------~~~~LG~d~~~g~~~q 100 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSY------------------ETVVLGPDLAAGERPQ 100 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTE------------------EEEEESSTTCTTEBSE
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCe------------------EEEEECCCCCCCceEE
Confidence 46666777999998877764 89998888887 6889999998741 001233344555 36
Q ss_pred EEECCCCeEEEEecCCCCEEEEE
Q 040805 450 YIVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 450 ~vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
++||+|+.....-....+..+|+
T Consensus 101 ~vVp~G~W~aa~l~~~~~y~Lvs 123 (139)
T PF06172_consen 101 VVVPAGTWQAAELEPEGDYSLVS 123 (139)
T ss_dssp EEE-TTSEEEEEECESSSEEEEE
T ss_pred EEECCCEEEEccccCCCCEEEEE
Confidence 89999998876433344566554
No 159
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=75.27 E-value=14 Score=37.76 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=44.6
Q ss_pred ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCC--------cEEEECCCCeEEEEeCC
Q 040805 175 GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRG--------DIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~G--------Dv~~iPaG~~h~~~N~g 245 (540)
|...+.+.++.|++|....-.--+-+..++++.|+++|.+ ++...+.|..- |+++||.|+..-+.+.+
T Consensus 23 g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~---~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~ 98 (261)
T PF04962_consen 23 GWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV---DGEEFYELGGRESVFDGPPDALYVPRGTKVVIFAST 98 (261)
T ss_dssp CCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE---TTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESS
T ss_pred CccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe---CCceEEEecccccccCCCCcEEEeCCCCeEEEEEcC
Confidence 5555666677889987643332234455678899999888 33345556555 99999999999988864
No 160
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.15 E-value=22 Score=37.94 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=46.0
Q ss_pred cccceEEEEEEcCCCcc-cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805 371 DLDITVSYANISKGAMA-APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~-~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV 449 (540)
..||++..-.++ -+|. .-.+|.+..+|+|+-.|+.++- +.-| ++ .|++||+
T Consensus 122 ~~g~~i~~y~~n-~sm~~~~f~NADge~Livpq~G~l~l~--te~G-----------------------~l--~v~pgei 173 (427)
T COG3508 122 QDGVAIHVYKVN-ESMTKRFFRNADGELLIVPQQGELRLK--TELG-----------------------VL--EVEPGEI 173 (427)
T ss_pred cCceEEEEEEcc-ccchhhhhhcCCCCEEEEeecceEEEE--Eeec-----------------------eE--EecCCcE
Confidence 335555443333 5666 7788888889999999887764 3322 23 6999999
Q ss_pred EEECCCCeEEEEec
Q 040805 450 YIVPAGHPVVTVAS 463 (540)
Q Consensus 450 ~vVPaG~~h~~~n~ 463 (540)
.|||+|......-.
T Consensus 174 avIPRG~~frve~~ 187 (427)
T COG3508 174 AVIPRGTTFRVELK 187 (427)
T ss_pred EEeeCCceEEEEec
Confidence 99999998876544
No 161
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=72.49 E-value=44 Score=33.77 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=62.1
Q ss_pred eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC----Cc--eEEee
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN----NR--ESYNV 225 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~----~~--~~~~l 225 (540)
......|.+..+ + |.-.|..-..+.++.|++|....-.-.+-+.++.++.|++.|..-... +. ..|.=
T Consensus 8 ~~~~~~g~v~~v---t---p~sagw~YVGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~ 81 (270)
T COG3718 8 KPPAGVGLVQDV---T---PESAGWEYVGFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFER 81 (270)
T ss_pred cCCCCCcceEEe---c---CCCCCceeEEEEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccC
Confidence 344556777776 2 233466667777778899987665566777888999999987763221 11 23555
Q ss_pred CCCcEEEECCCCeEEEEeCC
Q 040805 226 KRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 226 ~~GDv~~iPaG~~h~~~N~g 245 (540)
++=|.++||+|..+.+..+.
T Consensus 82 ~p~~~vYvp~g~~~~vtA~t 101 (270)
T COG3718 82 KPPDSVYVPAGSAFSVTATT 101 (270)
T ss_pred CCCCeEEecCCceEEEEeec
Confidence 67799999999999998865
No 162
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=72.48 E-value=3.4 Score=44.02 Aligned_cols=59 Identities=27% Similarity=0.311 Sum_probs=40.3
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecC-------Cc-------------eEEeeCCCcEEEECCCCeEEEEeC
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-------NR-------------ESYNVKRGDIIRVPSGNTFYVTNT 244 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-------~~-------------~~~~l~~GDv~~iPaG~~h~~~N~ 244 (540)
-+.|||-+-|||-.-+ +|+++|.|+=.+--.. .. ....+.+||+.+||+|.+|+=+..
T Consensus 125 ~a~~GGgvg~H~D~YD--VfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQYD--VFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccchh--eeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 4688998899996655 4566666533331111 11 013789999999999999998876
Q ss_pred C
Q 040805 245 D 245 (540)
Q Consensus 245 g 245 (540)
+
T Consensus 203 ~ 203 (383)
T COG2850 203 D 203 (383)
T ss_pred c
Confidence 4
No 163
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=70.93 E-value=11 Score=32.50 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=32.3
Q ss_pred eeCCCccccccccCC---CeEEEEEe--eEEEEEEEecCCc-------------------eEEeeCCCcEEEECCCCeEE
Q 040805 185 IANPQTFVTPTHLDA---DAVFFVSW--GQGTITVIRENNR-------------------ESYNVKRGDIIRVPSGNTFY 240 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A---~ei~yV~~--G~g~ig~V~~~~~-------------------~~~~l~~GDv~~iPaG~~h~ 240 (540)
..++|+...+|.|.. +-++||-- +.+.+.+.++... .....++||++++|+-+.|+
T Consensus 6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHG 85 (101)
T ss_dssp EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEE
T ss_pred EeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEe
Confidence 567888888887754 45667653 3344666655311 23578999999999999999
Q ss_pred EEeCC
Q 040805 241 VTNTD 245 (540)
Q Consensus 241 ~~N~g 245 (540)
+.-..
T Consensus 86 v~p~~ 90 (101)
T PF13759_consen 86 VPPNN 90 (101)
T ss_dssp E----
T ss_pred ccCcC
Confidence 87654
No 164
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=70.36 E-value=41 Score=34.48 Aligned_cols=75 Identities=23% Similarity=0.439 Sum_probs=43.3
Q ss_pred ccceeeeeeeCCCc---cccccccCC---------CeEEEEE----eeEEEEEEEecC--CceEEeeCCCcEEEECCC--
Q 040805 177 EKYRLGILIANPQT---FVTPTHLDA---------DAVFFVS----WGQGTITVIREN--NRESYNVKRGDIIRVPSG-- 236 (540)
Q Consensus 177 ~~~rl~~~~l~Pgg---l~~Ph~~~A---------~ei~yV~----~G~g~ig~V~~~--~~~~~~l~~GDv~~iPaG-- 236 (540)
.++-++++. .|+| ..+||.|+. +|++|.. +|-|.--+..+. ..+.+.|+-||++.||.|
T Consensus 149 ~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~gyH 227 (261)
T PF04962_consen 149 SRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSGYH 227 (261)
T ss_dssp SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTTB-
T ss_pred ceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCCCC
Confidence 344455544 6665 358998987 7777663 244432333332 346789999999999999
Q ss_pred CeEEEEeCCCCccEEEEEEe
Q 040805 237 NTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 237 ~~h~~~N~g~~e~l~~v~i~ 256 (540)
-.|.-..+ .+.+|.+.
T Consensus 228 p~~aapGy----~~Yylw~m 243 (261)
T PF04962_consen 228 PVVAAPGY----DMYYLWVM 243 (261)
T ss_dssp SEEEEEES----SEEEEEEE
T ss_pred CcCcCCCc----CcEEEEEE
Confidence 44443332 35566555
No 165
>PRK10579 hypothetical protein; Provisional
Probab=69.95 E-value=48 Score=28.80 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=49.9
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG 455 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG 455 (540)
.....|.||- -++++.+.|+.=|+.|...|.+-.... ...+++|+-|.||++
T Consensus 25 kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~e-------------------------w~~~~aG~sF~Vpan 76 (94)
T PRK10579 25 ASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATD-------------------------WQVYEAGEVFNVPGH 76 (94)
T ss_pred eEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCcc-------------------------cEEeCCCCEEEECCC
Confidence 4445556665 578899999999999998887544321 135789999999999
Q ss_pred CeEEEEecCCCCEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F 473 (540)
..+-+... +...++|.
T Consensus 77 ssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 77 SEFHLQVA--EPTSYLCR 92 (94)
T ss_pred CeEEEEEC--cceeeEEE
Confidence 98887654 35666663
No 166
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=69.72 E-value=44 Score=29.04 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=47.7
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
-......|.||- =++++.+.|+.=|+.|...|.+-.... . ..+.+|+.|.||
T Consensus 23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e---------------------w----~~~~aGesF~Vp 74 (94)
T PF06865_consen 23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE---------------------W----QTYSAGESFEVP 74 (94)
T ss_dssp EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS--------------------------EEEETT-EEEE-
T ss_pred CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc---------------------c----EEeCCCCeEEEC
Confidence 445556666776 578899999999999998887654321 1 357899999999
Q ss_pred CCCeEEEEecCCCCEEEEEE
Q 040805 454 AGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 454 aG~~h~~~n~~~e~l~~v~F 473 (540)
++.-+-+... +...++|.
T Consensus 75 anssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 75 ANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp TTEEEEEEES--S-EEEEEE
T ss_pred CCCeEEEEEC--cceeeEEE
Confidence 9999887664 46777774
No 167
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=69.04 E-value=11 Score=38.45 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=42.1
Q ss_pred cceEEEEEEcCCCc-----ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCC
Q 040805 373 DITVSYANISKGAM-----AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTD 447 (540)
Q Consensus 373 ~isv~~~~L~pggm-----~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G 447 (540)
++.++.+..++..+ ...+.+.+.-.++++++|.+.+.+ ++ +. ..|.+|
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g----------------------~~--~~l~~G 96 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DD----------------------RQ--VQLAAG 96 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CC----------------------eE--EEEcCC
Confidence 35555555544422 223343444558888999888763 12 22 369999
Q ss_pred cEEEECCCCeEEEEecCC
Q 040805 448 SAYIVPAGHPVVTVASQN 465 (540)
Q Consensus 448 DV~vVPaG~~h~~~n~~~ 465 (540)
|++++|++.||.+...++
T Consensus 97 ~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 97 DITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEECCCCcEeecCCC
Confidence 999999999998765433
No 168
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.54 E-value=18 Score=38.57 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=37.2
Q ss_pred CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
|.++|+|+.+|+.++-. .-+ ...|++||+.+||+|+.+-+.=.+ + .++++
T Consensus 145 Dge~Livpq~G~l~l~t--e~G--~l~v~pgeiavIPRG~~frve~~~-~-~~rgy 194 (427)
T COG3508 145 DGELLIVPQQGELRLKT--ELG--VLEVEPGEIAVIPRGTTFRVELKD-G-EARGY 194 (427)
T ss_pred CCCEEEEeecceEEEEE--eec--eEEecCCcEEEeeCCceEEEEecC-C-ceEEE
Confidence 56788999999875543 212 468999999999999999988765 3 24444
No 169
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=67.38 E-value=47 Score=30.94 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=50.9
Q ss_pred ccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC--CCCccE
Q 040805 173 LRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT--DDDEKL 250 (540)
Q Consensus 173 L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~--g~~e~l 250 (540)
++|+..+|. .--.... +....+.+++|++|+=++.+ +...+...+|+.++.|...+.-..-. ..++|+
T Consensus 3 ipgl~i~r~-----~~~~~~~-~~~y~p~i~~vlQG~K~~~~----g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~ 72 (155)
T PF06719_consen 3 IPGLSIFRS-----SRPTPPM-PCVYEPSICIVLQGSKRVHL----GDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPY 72 (155)
T ss_pred CCCEEEEEE-----CCCCCCc-ceecCCeEEEEEeeeEEEEE----CCceEEecCCcEEEecCCCcEEEEEeeccCCCCE
Confidence 346666665 2222222 33467889999999988777 56789999999999999987765542 234576
Q ss_pred EEEEEe
Q 040805 251 YIVKFI 256 (540)
Q Consensus 251 ~~v~i~ 256 (540)
.-+.+.
T Consensus 73 l~l~l~ 78 (155)
T PF06719_consen 73 LALSLE 78 (155)
T ss_pred EEEEEE
Confidence 666554
No 170
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=66.70 E-value=31 Score=33.98 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=43.4
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEECCCC
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVPSGN 237 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iPaG~ 237 (540)
.....+++|..+...-..++.+++|++|.+.+..+++++.+ ...+.+||+|-...+.
T Consensus 38 ~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~ 96 (230)
T PRK09391 38 ASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGS 96 (230)
T ss_pred eeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCC
Confidence 44457888887666666788999999999999988877664 3456899998766554
No 171
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=66.66 E-value=16 Score=34.71 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=37.9
Q ss_pred eeeCCCcccccccc--CCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHL--DADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~--~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iP 234 (540)
..+++|..+.-.-- .++.+++|++|.+++..+++++.+ ..-+.+||+|-.+
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 35677766544443 578999999999999999887664 3466999998654
No 172
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=65.09 E-value=52 Score=32.35 Aligned_cols=128 Identities=12% Similarity=0.001 Sum_probs=79.6
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
+...+....+.+|-++.-.= -.++.+.+|++|...+...+++|. +.+..-+.+||+|-
T Consensus 34 ~~~~~~~~~~~kge~l~~~G-d~~~~ly~I~~G~vkl~~~~~~G~---------------------e~i~~~~~~Gd~fG 91 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEG-EPADYVYQVESGAVRTYRLLSDGR---------------------RQIGAFHLPGDVFG 91 (230)
T ss_pred ccceeeeEEECCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCc---------------------EEEEEEecCCceec
Confidence 35667778888887765543 457779999999999999988763 34445678999988
Q ss_pred ECCCCeE--EEEecCCCCEEEEEEEecC------CCCc-ccc----cc--------------------------------
Q 040805 452 VPAGHPV--VTVASQNNNLEVVCFEINA------EGNI-RFP----LA-------------------------------- 486 (540)
Q Consensus 452 VPaG~~h--~~~n~~~e~l~~v~F~~~a------~~~~-~~~----LA-------------------------------- 486 (540)
...+.++ ...+. ++..++.|.... .++. ..+ ++
T Consensus 92 ~~~~~~~~~~~~A~--~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~ 169 (230)
T PRK09391 92 LESGSTHRFTAEAI--VDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDER 169 (230)
T ss_pred ccCCCcCCeEEEEc--CceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7766543 33443 345555553221 0110 000 00
Q ss_pred -cc-ccccccCCHHHHHHHcCCCHHHHHHhhcCC-CCceE
Q 040805 487 -GR-NKIFKVMESEAKELAFNTRADEVERVFGNQ-DQDWF 523 (540)
Q Consensus 487 -G~-~svl~~~~~evla~AF~vs~e~v~kl~~~q-~e~~f 523 (540)
|. ..+.-.++.+-+|..+|++.+++.++++.= ++.+|
T Consensus 170 ~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI 209 (230)
T PRK09391 170 LGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLI 209 (230)
T ss_pred hCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 00 011224678899999999999999977653 33434
No 173
>PF14861 Antimicrobial21: Plant antimicrobial peptide
Probab=63.38 E-value=7.2 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.718 Sum_probs=15.4
Q ss_pred HHHHHHhhhcccchhhHHHHHHHHH
Q 040805 98 QCQRECDRQEEGGQQRALCRFRCQE 122 (540)
Q Consensus 98 ~c~~~c~~~~~~~~q~~~c~~rc~~ 122 (540)
.|..+|+.-. -.-.+++|+++|..
T Consensus 6 ~C~k~Cqhh~-D~~~kq~Cv~~C~r 29 (31)
T PF14861_consen 6 RCRKQCQHHR-DPWRKQQCVQDCRR 29 (31)
T ss_pred HHHHHhhccc-CHHHHHHHHHHHHh
Confidence 4888884322 22567888888864
No 174
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=62.98 E-value=27 Score=33.29 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=47.4
Q ss_pred cccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC-C-------ceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805 176 LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-N-------RESYNVKRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 176 i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-~-------~~~~~l~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
++.+.+ ++.||.+.+||-|.-.-++=|++|--+-. +.+- + .......+|.|- +-+|.+|.+.|++.+
T Consensus 73 ltV~~~---t~~PG~~~p~HnH~~wglVgil~G~E~n~-~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHI---TLSPGVQYPPHNHLMWGLVGILWGGETNF-IYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSD 147 (191)
T ss_pred EEEEEE---EeCCCcccCCcccchheeeeeeecccccc-eecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCC
Confidence 444555 99999999999888777888888854433 3321 1 122457788888 555999999999855
Q ss_pred c
Q 040805 248 E 248 (540)
Q Consensus 248 e 248 (540)
.
T Consensus 148 r 148 (191)
T COG5553 148 R 148 (191)
T ss_pred c
Confidence 3
No 175
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=62.57 E-value=65 Score=30.79 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=55.9
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+.+..+.-.||--..+|=|..+.-++.|++|...-+......... . .... ......+..|.++++
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~------~---~~~~-----~~~~~~~~~g~~~~~ 139 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGG------A---PLEL-----VGRERLLPGGVTYIF 139 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS----------EEEE-----CEEEEEETTTEEEEB
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCccc------C---cccc-----cCceEecCCCeEEec
Confidence 4667788899999999999988999999999998887766543200 0 0000 011224688888899
Q ss_pred CCCCeEEEEec-CCCCEEEEEEEecC
Q 040805 453 PAGHPVVTVAS-QNNNLEVVCFEINA 477 (540)
Q Consensus 453 PaG~~h~~~n~-~~e~l~~v~F~~~a 477 (540)
+.+..|-+.|. +++ ..|++.+.+
T Consensus 140 ~~~~iH~v~n~s~~~--~avSLHvYs 163 (175)
T PF05995_consen 140 DPHGIHRVENPSGDE--PAVSLHVYS 163 (175)
T ss_dssp TTTBEEEEEES-SSS---EEEEEEEE
T ss_pred CCCCeEEeccCCCCC--CEEEEEEcC
Confidence 99999998554 344 345666555
No 176
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=60.94 E-value=39 Score=33.83 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=42.4
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEe--eEEEEEEEecC--Cc---------------e------EEeeCCCcEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSW--GQGTITVIREN--NR---------------E------SYNVKRGDIIR 232 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~--G~g~ig~V~~~--~~---------------~------~~~l~~GDv~~ 232 (540)
.|.-=++.+.+|-..+-|+|-.-.--++-. |...|.+...+ +. . ...|.+|.-|.
T Consensus 86 ~YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT 165 (225)
T PF07385_consen 86 PYAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT 165 (225)
T ss_dssp -EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE
T ss_pred cchhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe
Confidence 344345577888877666663222223333 35556665543 11 1 13889999999
Q ss_pred ECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805 233 VPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263 (540)
Q Consensus 233 iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg 263 (540)
+|+|+-|++..-+++ ++|.=+.++|.+.
T Consensus 166 L~Pg~yH~Fw~e~g~---vLigEVStvNDD~ 193 (225)
T PF07385_consen 166 LPPGIYHWFWGEGGD---VLIGEVSTVNDDN 193 (225)
T ss_dssp E-TTEEEEEEE-TTS---EEEEEEEE---TT
T ss_pred eCCCCeeeEEecCCC---EEEEeeecccCCC
Confidence 999999999986532 6666665666543
No 177
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=60.90 E-value=92 Score=25.76 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=41.5
Q ss_pred eeCCCccc-ccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805 185 IANPQTFV-TPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT 242 (540)
Q Consensus 185 ~l~Pggl~-~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~ 242 (540)
.|.|++.+ ... .......+.+.+|+..+.+-... ...+.|+.++..+...|+.+++.
T Consensus 22 ~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~-~~~~~V~T~~~~i~v~GT~f~v~ 80 (98)
T PF04773_consen 22 RLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGK-KRPFEVRTPTATIGVRGTRFSVR 80 (98)
T ss_pred EECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccC-CCCEEEEeCCEEEEEecCEEEEE
Confidence 77999887 222 23455678999999977764433 33399999999999999877553
No 178
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=60.81 E-value=50 Score=31.43 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=38.3
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
...+++|..+...=-.++.+++|++|.+.+...++++.+ ...+.+||++-.
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 347788887665555678999999999998877665543 357899999844
No 179
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=60.78 E-value=95 Score=29.98 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=59.9
Q ss_pred eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
.-+|-+|..+.+-.+...+ -.++ -.+|+.+.++.-.+. .-.++.-+.++.+++|.|. .+..++......+++++.+
T Consensus 10 pWkNggG~T~Ei~~~P~~~-~~~~-F~wRiS~A~V~~~g~-FS~FpG~~R~l~~L~G~gl-~L~~~~~~~~~~l~p~~~~ 85 (184)
T PF05962_consen 10 PWKNGGGTTREIAIYPEGS-AKRD-FDWRISIATVEADGP-FSDFPGYDRILTLLEGNGL-RLTHDGQQEHTLLQPFQPF 85 (184)
T ss_dssp E-TTSSEEEEEEEE-SSSC-CCCC--SEEEEEEEE-SSEE-E---TT-EEEEEEEESS-E-EEEETTCSE-EEE-BT--E
T ss_pred cccCCCeEEEEEEEcCCCC-ccCC-ceEEEEEEEEcCCCC-CCCCCCCcEEEEEEeCCcE-EEecCCCcceeccCCCCcE
Confidence 4578999999986555433 1222 358999999998887 5556788999999999853 4444554455668999999
Q ss_pred EECCCCeEEEEeCCCCccEEEEEEe
Q 040805 232 RVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 232 ~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.++-+........++ +++-+.+.
T Consensus 86 ~F~G~~~v~~~l~~G--~~~dfNlM 108 (184)
T PF05962_consen 86 AFDGDWPVTSELLDG--PVRDFNLM 108 (184)
T ss_dssp EEETTS-EEEEESSS---EEEEEEE
T ss_pred EcCCCCeEEEEECCC--CEEEEEEE
Confidence 999998888876652 45555444
No 180
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=59.92 E-value=29 Score=36.51 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=33.5
Q ss_pred CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEE
Q 040805 198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV 241 (540)
Q Consensus 198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~ 241 (540)
+...|++|++|.+++.. +..++.|++|+.++||+...-|.
T Consensus 259 ~~~~il~v~eG~~~l~~----~~~~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 259 ESFSILLVLEGEGTLIG----GGQTLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred CCcEEEEEEcCeEEEec----CCEEEEEcCCcEEEEEcCCCcEE
Confidence 47889999999998775 56789999999999999855444
No 181
>PRK11396 hypothetical protein; Provisional
Probab=58.93 E-value=99 Score=30.32 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=63.3
Q ss_pred eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
.-+|-+|..+.+-.+.... .+ -..|+++.+|...|- .-.++.-+.++.|++|.+. .+.. ++.....++++|.+
T Consensus 13 ~WkNGgG~TrEI~~~P~~~---~d-F~WRiSiA~I~~~Gp-FS~FpGidR~i~lL~G~g~-~L~~-~~~~~~~l~~~~p~ 85 (191)
T PRK11396 13 LWRNAAGETREICTFPPAK---RD-FYWRASIASIAANGE-FSLFPGMERIVTLLEGGEM-FLES-ADRFNHTLKPLQPF 85 (191)
T ss_pred cccCCCeEEEEEEEcCCCC---CC-ceEEEEEEEecCCCC-CCCCCCccEEEEEEECCCE-EEee-CCccceecCCCCCe
Confidence 4588999999985443211 12 358999999888776 3456788999999999653 3322 33345567899999
Q ss_pred EECCCCeEEEEeCCC
Q 040805 232 RVPSGNTFYVTNTDD 246 (540)
Q Consensus 232 ~iPaG~~h~~~N~g~ 246 (540)
.++-+........++
T Consensus 86 ~F~Gd~~v~a~L~~G 100 (191)
T PRK11396 86 AFAADQVVKAKLTAG 100 (191)
T ss_pred EeCCCCeeEEEECCC
Confidence 999999988888763
No 182
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=58.03 E-value=55 Score=29.66 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.4
Q ss_pred eeeCCCcEEEECCCCeEEEEecC
Q 040805 442 SRIRTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 442 ~~l~~GDV~vVPaG~~h~~~n~~ 464 (540)
..+.+||+++++.+.++.+....
T Consensus 75 ~~~~pg~~~l~d~~~~~~~~~~~ 97 (172)
T PF14525_consen 75 VELAPGDVVLLDPGQPYRLEFSA 97 (172)
T ss_pred EEEcCCeEEEEcCCCCEEEEECC
Confidence 36999999999999998876553
No 183
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=57.66 E-value=23 Score=34.67 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=39.4
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEEC
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVP 234 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iP 234 (540)
.+++|..+...--..+.+++|++|.+.+..++.++.+ ...+.+||+|-..
T Consensus 35 ~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 35 HFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 5588887766666788999999999999998877654 3467899988754
No 184
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=57.47 E-value=33 Score=29.36 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=18.6
Q ss_pred EEeeeeCCCcEEEECCCCeEEEEec
Q 040805 439 KVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 439 ~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
.+...|+.||.+++|.+....+...
T Consensus 53 ~~~~~vk~GD~Vl~~~~~g~~v~~~ 77 (93)
T PF00166_consen 53 EVPMDVKVGDKVLFPKYAGTEVKFD 77 (93)
T ss_dssp EEETSS-TTSEEEEETTTSEEEEET
T ss_pred EeeeeeeeccEEeccccCceEEEEC
Confidence 3446799999999999997765543
No 185
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.41 E-value=7.7 Score=33.68 Aligned_cols=11 Identities=27% Similarity=0.099 Sum_probs=5.0
Q ss_pred CCcchhHHHHH
Q 040805 1 MNRKLCFTLFT 11 (540)
Q Consensus 1 ~~~~~~~~~~~ 11 (540)
|..|..|+|.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 54555333333
No 186
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=57.14 E-value=39 Score=34.63 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=46.8
Q ss_pred CCCccccccc-CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCC-CcEEEECCCCeEEE
Q 040805 383 KGAMAAPFYN-SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT-DSAYIVPAGHPVVT 460 (540)
Q Consensus 383 pggm~~PH~h-~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-GDV~vVPaG~~h~~ 460 (540)
|++++.||-| +...+.+.|++|+..+-+.++.+. ......|.+ ++.-+||.+..|.+
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~---------------------~~~~~~l~~~~~~~~i~p~~wh~v 78 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGE---------------------ELSEHIFDAENQPPFIEPQAWHRI 78 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCC---------------------eeeEEEEecCCCCceeCCcceEEE
Confidence 7888999987 345568899999999998887652 112223444 44557888999988
Q ss_pred EecCCCCEE-EEEEE
Q 040805 461 VASQNNNLE-VVCFE 474 (540)
Q Consensus 461 ~n~~~e~l~-~v~F~ 474 (540)
.... +++. .+.|.
T Consensus 79 ~~~s-~d~~~~l~fy 92 (287)
T PRK12335 79 EAAS-DDLECQLSFY 92 (287)
T ss_pred EEcC-CCcEEEEEEE
Confidence 7653 3333 35553
No 187
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=56.49 E-value=92 Score=29.59 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=48.2
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|.++... .-.++.+.+|++|..++....+++. ......+.+||+|-...
T Consensus 20 ~~~~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~g~~~~ 77 (211)
T PRK11753 20 CHIHKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEGK---------------------EMILSYLNQGDFIGELGL 77 (211)
T ss_pred CeEEEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCCC---------------------EEEEEEcCCCCEEeehhh
Confidence 346677788776544 3457789999999999988777653 34446789999984432
Q ss_pred ---C--CeEEEEecCCCCEEEEEE
Q 040805 455 ---G--HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 455 ---G--~~h~~~n~~~e~l~~v~F 473 (540)
. ++....+. ++..++.+
T Consensus 78 ~~~~~~~~~~~~a~--~~~~v~~i 99 (211)
T PRK11753 78 FEEGQERSAWVRAK--TACEVAEI 99 (211)
T ss_pred ccCCCCceEEEEEc--CcEEEEEE
Confidence 2 22334444 34566555
No 188
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=55.37 E-value=1.2e+02 Score=25.63 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=44.2
Q ss_pred CCCcccccccCCCcEE--EEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEE
Q 040805 383 KGAMAAPFYNSRSTKV--AVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT 460 (540)
Q Consensus 383 pggm~~PH~h~~A~ei--~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~ 460 (540)
|-+++..| |+++..| +-|++|+..+....+++.- ..-.. -+.+|+..+||+...|.+
T Consensus 12 P~~l~~~H-~TK~GtWg~l~Vl~G~L~f~~~~~~~~~-----------------~~~~~---~~~~~~~~~i~Pq~wH~V 70 (82)
T PF09313_consen 12 PAALLERH-NTKAGTWGKLRVLEGELKFYGLDEEGEE-----------------PEEEV---FIPAGQPPVIEPQQWHRV 70 (82)
T ss_dssp -GGGGSSB-CCSTTEEEEEEEEESEEEEEEESSTT-S-----------------ESEEE---EEETTEEEEE-TT-EEEE
T ss_pred cHHHHhhc-CCCCCeEEEEEEEeeEEEEEEECCCCCc-----------------eeEEE---EeCCCCCceeCCCceEEE
Confidence 45666777 4777775 5789999999999987621 00022 378999999999999998
Q ss_pred EecCCCCEEE
Q 040805 461 VASQNNNLEV 470 (540)
Q Consensus 461 ~n~~~e~l~~ 470 (540)
...++ ++.+
T Consensus 71 ~p~s~-D~~f 79 (82)
T PF09313_consen 71 EPLSD-DLRF 79 (82)
T ss_dssp EESST-T-EE
T ss_pred EECCC-CEEE
Confidence 87643 4543
No 189
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=55.14 E-value=84 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.1
Q ss_pred EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 223 YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 223 ~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
..|.+|.-+.+|+|+-||+..-++ .++|.=..++|.+
T Consensus 155 lkL~PGesitL~Pg~~HsFwae~g---~vlvgEvSsvndD 191 (225)
T COG3822 155 LKLSPGESITLPPGLYHSFWAEEG---GVLVGEVSSVNDD 191 (225)
T ss_pred EEECCCCcEecCCCceeeeeecCC---cEEEEEEeeccCc
Confidence 389999999999999999998652 3566655455543
No 190
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=54.65 E-value=31 Score=28.25 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=36.8
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc--eEEeeCCCcEEEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--ESYNVKRGDIIRV 233 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--~~~~l~~GDv~~i 233 (540)
.+..+++|..+...-...+.++||++|...+....+++. ....+.+||++-.
T Consensus 18 ~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 344678888765444557889999999998877666543 2456788888744
No 191
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=54.52 E-value=42 Score=27.50 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=35.8
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc--eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--~~~~l~~GDv~~iP 234 (540)
..+.+|..+.-.--..+.+++|++|...+-..+.++. ....+.+||++-..
T Consensus 20 ~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 20 VRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 4678887754444457889999999998776654433 34677888877543
No 192
>COG1741 Pirin-related protein [General function prediction only]
Probab=52.29 E-value=35 Score=35.33 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=49.4
Q ss_pred EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCe
Q 040805 378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP 457 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~ 457 (540)
-..+.||.-+.||=|..=.-|.||++|+.+-. ++-+ .+ ..+++|||-.+-||..
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~G----------------------n~--~~i~pGdvqwMTAG~G 101 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLG----------------------NK--GVIRPGDVQWMTAGSG 101 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCC----------------------ce--eeecccceeEEcCCCc
Confidence 45678999999999988888999999996665 2222 11 3589999999999986
Q ss_pred E--EEEec--CCCCEEEE
Q 040805 458 V--VTVAS--QNNNLEVV 471 (540)
Q Consensus 458 h--~~~n~--~~e~l~~v 471 (540)
. ..++. .+.+|..+
T Consensus 102 I~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 102 IVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred eeecccCCccCCCcccee
Confidence 5 44553 33456543
No 193
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=52.19 E-value=96 Score=29.31 Aligned_cols=73 Identities=11% Similarity=-0.048 Sum_probs=46.8
Q ss_pred EEEEcCCCcccccccC-CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC--
Q 040805 378 YANISKGAMAAPFYNS-RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA-- 454 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~-~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa-- 454 (540)
.+.+.+|..+.-.=.+ .++.+.+|++|..++....++|. +.+..-+.+||+|--+.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~---------------------e~~l~~~~~Gd~~G~~~~~ 66 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGN---------------------ALTLRYVRPGEYFGEEALA 66 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCC---------------------EEEEEEecCCCeechHHhc
Confidence 4556666555333223 46789999999999999998773 34556779999876542
Q ss_pred --CCeEEEEecCCCCEEEEEE
Q 040805 455 --GHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 455 --G~~h~~~n~~~e~l~~v~F 473 (540)
-++++..+.. +..++.+
T Consensus 67 ~~~~~~~~~A~~--~~~v~~i 85 (202)
T PRK13918 67 GAERAYFAEAVT--DSRIDVL 85 (202)
T ss_pred CCCCCceEEEcC--ceEEEEE
Confidence 2334444443 4555555
No 194
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=51.88 E-value=58 Score=32.10 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=56.8
Q ss_pred ccceeeeeeeCCCcccccc-ccCCCeEEEEEeeEEEEEEEecCCc-----------eEEe------e-CCCc-EEEECC-
Q 040805 177 EKYRLGILIANPQTFVTPT-HLDADAVFFVSWGQGTITVIRENNR-----------ESYN------V-KRGD-IIRVPS- 235 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~-----------~~~~------l-~~GD-v~~iPa- 235 (540)
..+.+++|.|.||+..+.| |++=.-+.-|+.|++.|.-.+--.. ...+ + .+++ .+.-|.
T Consensus 42 ~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ 121 (200)
T PF07847_consen 42 EDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTS 121 (200)
T ss_pred CCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCC
Confidence 4678999999999987666 4567778889999998876552110 0011 1 2223 444554
Q ss_pred -CCeEEEEeCCCCccEEEEEEeecCCC
Q 040805 236 -GNTFYVTNTDDDEKLYIVKFIKSINL 261 (540)
Q Consensus 236 -G~~h~~~N~g~~e~l~~v~i~~~~~~ 261 (540)
|-.|++.|.+ .++.++-|+.|..+
T Consensus 122 ggNiH~f~a~~--~p~AflDIL~PPY~ 146 (200)
T PF07847_consen 122 GGNIHEFTALT--GPCAFLDILAPPYD 146 (200)
T ss_pred CCeeEEEEeCC--CCeEEEEEccCCCC
Confidence 5899999975 58889888877665
No 195
>PRK09774 fec operon regulator FecR; Reviewed
Probab=49.93 E-value=87 Score=32.79 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=61.8
Q ss_pred ccceeecCCceEEEeccCcccccccc-ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCC-ceEEeeC
Q 040805 149 ESSRVTSQHGRVAFLPKFTQRSKLLR-GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN-RESYNVK 226 (540)
Q Consensus 149 f~~~~~~e~G~i~~l~~f~~~~~~L~-Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~-~~~~~l~ 226 (540)
+..-+.|..|.++.+ .|+ |. ++ .|++++-+--.|.....-+..++|++.+.+.. +. ...|.|.
T Consensus 107 ~~~~~~T~~Ge~r~v--------~L~DGS---~v---~Ln~~S~l~~~~~~~~R~v~L~~Gea~F~Va~-d~~~rPF~V~ 171 (319)
T PRK09774 107 LRADYRTAKGEVSRQ--------RLEDGS---LL---TLNTQSAVDVRFDAHQRTVRLWYGEIAITTAK-DALQRPFRVL 171 (319)
T ss_pred cceeeecCCCceEEE--------EcCCCC---EE---EEcCCCeEEEeecCCeeEEEEeccEEEEEEcC-CCCCCCEEEE
Confidence 334577899998887 455 42 45 77999877656666666777889999999743 33 3678999
Q ss_pred CCcEEEECCCCeEEEEeCCC
Q 040805 227 RGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 227 ~GDv~~iPaG~~h~~~N~g~ 246 (540)
.|+.-+---||.+-+.+.++
T Consensus 172 t~~~~v~vlGT~F~V~~~~~ 191 (319)
T PRK09774 172 TRQGQLTALGTEFTVRQQDN 191 (319)
T ss_pred eCCcEEEEeeeEEEEEEcCC
Confidence 99988888999998887653
No 196
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=46.93 E-value=67 Score=28.41 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=42.0
Q ss_pred CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE--EEE
Q 040805 384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV--VTV 461 (540)
Q Consensus 384 ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h--~~~ 461 (540)
++-+.||=|.+-.-|.||++|...-. ++.+. ...|++|||-++-||..+ ...
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~------------------------~~~l~~G~vq~m~AG~Gi~H~E~ 92 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN------------------------RGVLRAGDVQWMTAGSGIVHSER 92 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE------------------------EEEEETTEEEEEE-TTTEEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC------------------------eeEeCCCeEEEEeCCCCceEEEe
Confidence 56668898888888999999977554 44331 146999999999998755 455
Q ss_pred ecCC-CCEEEE
Q 040805 462 ASQN-NNLEVV 471 (540)
Q Consensus 462 n~~~-e~l~~v 471 (540)
|..+ .++..+
T Consensus 93 ~~~~~~~~~~l 103 (107)
T PF02678_consen 93 NASDGGPLHGL 103 (107)
T ss_dssp E-TSSS-EEEE
T ss_pred cCCCCCeEEEE
Confidence 6544 556554
No 197
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=46.40 E-value=79 Score=31.11 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=40.7
Q ss_pred eeCCCccccccccCC---CeEEEEE--eeEEEEEEEecCCc------------------e-EEeeCCCcEEEECCCCeEE
Q 040805 185 IANPQTFVTPTHLDA---DAVFFVS--WGQGTITVIRENNR------------------E-SYNVKRGDIIRVPSGNTFY 240 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A---~ei~yV~--~G~g~ig~V~~~~~------------------~-~~~l~~GDv~~iPaG~~h~ 240 (540)
.+.+|+...+|+|.. +-++||. .|.+.+.+.+|... . ...-++||++++|.=+.|.
T Consensus 102 i~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H~ 181 (201)
T TIGR02466 102 ILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLRHE 181 (201)
T ss_pred EcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCcee
Confidence 568899888887643 4567776 44455555554311 0 1244899999999999998
Q ss_pred EEeCC
Q 040805 241 VTNTD 245 (540)
Q Consensus 241 ~~N~g 245 (540)
+.=..
T Consensus 182 v~p~~ 186 (201)
T TIGR02466 182 VPPNE 186 (201)
T ss_pred cCCCC
Confidence 76543
No 198
>PHA02984 hypothetical protein; Provisional
Probab=46.20 E-value=81 Score=32.48 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=47.2
Q ss_pred CCeEE--EEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 199 ADAVF--FVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 199 A~ei~--yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
+.|-+ .++.|+..|-....+..-+.++.+||.|.+--++-|.+.-.+. .|.++.+.-+++.|
T Consensus 91 snEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~k--nl~L~Vi~y~v~~p 154 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDK--NLHLAVITYTSNCP 154 (286)
T ss_pred eccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCC--ceEEEEEEEEecce
Confidence 44444 4679999999877777789999999999999999999977653 45555555456554
No 199
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=45.91 E-value=64 Score=25.58 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=34.6
Q ss_pred EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 380 NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 380 ~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
++.+|..+...- -..+.+.||++|...+.....++. ......+.+||++-
T Consensus 3 ~~~~g~~i~~~g-~~~~~~~~i~~G~v~~~~~~~~~~---------------------~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 3 TYKKGEVIYRQG-DPCDHIYIILSGEVKVSSINEDGK---------------------EQIIFFLGPGDIFG 52 (91)
T ss_dssp EESTTEEEEETT-SBESEEEEEEESEEEEEEETTTSE---------------------EEEEEEEETTEEES
T ss_pred EECCCCEEEeCC-CcCCEEEEEEECceEEEeceecce---------------------eeeecceeeecccc
Confidence 344555544443 347789999999999998888652 23456788888873
No 200
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=45.53 E-value=28 Score=37.25 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=56.3
Q ss_pred ccccceeeeeeeCCCccccccc---cCCCeEEEEEeeEEEEEEEecCCceE--------------------------Eee
Q 040805 175 GLEKYRLGILIANPQTFVTPTH---LDADAVFFVSWGQGTITVIRENNRES--------------------------YNV 225 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pggl~~Ph~---~~A~ei~yV~~G~g~ig~V~~~~~~~--------------------------~~l 225 (540)
+...||. +.+-|.|...|.| ..+..|..++-|+=+-=++.|+...+ -.=
T Consensus 195 ~~ddyrF--vy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Q 272 (427)
T KOG2131|consen 195 ESDDYRF--VYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQ 272 (427)
T ss_pred CCCceeE--EEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhc
Confidence 5677877 4567788888998 45889999999998888888874211 144
Q ss_pred CCCcEEEECCCCeEEEEeCCCC
Q 040805 226 KRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 226 ~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
++|.+|++|.|.-|-++|.+++
T Consensus 273 epge~VFvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 273 EPGETVFVPSGWHHQVLNLGDT 294 (427)
T ss_pred cCCceeeccCccccccccccce
Confidence 8999999999999999999853
No 201
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=44.66 E-value=1e+02 Score=24.60 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=40.6
Q ss_pred EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEE
Q 040805 380 NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVV 459 (540)
Q Consensus 380 ~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~ 459 (540)
.|.||..+... +.+...+-|.+|..-++.-.. . -+.-|.+||.+.+|+|--++
T Consensus 3 ~L~~g~~~~lr--~~~~~~l~v~~G~vWlT~~g~--~-----------------------~D~~L~~G~~l~l~~g~~vv 55 (63)
T PF11142_consen 3 ELAPGETLSLR--AAAGQRLRVESGRVWLTREGD--P-----------------------DDYWLQAGDSLRLRRGGRVV 55 (63)
T ss_pred EeCCCceEEeE--cCCCcEEEEccccEEEECCCC--C-----------------------CCEEECCCCEEEeCCCCEEE
Confidence 45666666555 456666999999988875221 1 12459999999999999988
Q ss_pred EEe
Q 040805 460 TVA 462 (540)
Q Consensus 460 ~~n 462 (540)
+.+
T Consensus 56 l~a 58 (63)
T PF11142_consen 56 LSA 58 (63)
T ss_pred EEe
Confidence 776
No 202
>PHA02951 Hypothetical protein; Provisional
Probab=44.61 E-value=53 Score=34.33 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=43.3
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~ 461 (540)
.|.|..|+. .+-..+.+++-+|+.++.-|++ ..+..++.+||++|+|+...+.+.
T Consensus 114 ~~~~~~~~s--~gFvAtICIKNeGiSgl~Vp~t----------------------~~LK~ni~~GD~IVsRs~rGv~fL 168 (337)
T PHA02951 114 KGALYLGHS--AGFTATICLKNEGISGLYIPGT----------------------SVLKINICQGDTIVSRSSRGVQFL 168 (337)
T ss_pred ccccccCCc--cceEEEEEEcCCCeeEEEeCCC----------------------chheeeeccCcEEEEeccccceec
Confidence 345555654 5666888999999999999987 345678999999999999888664
No 203
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=43.79 E-value=70 Score=27.94 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 040805 46 KQKEQCART 54 (540)
Q Consensus 46 ~~~~~c~~~ 54 (540)
++.+.=|..
T Consensus 42 r~~r~~MKE 50 (121)
T PF10669_consen 42 RQVRIRMKE 50 (121)
T ss_pred HHHHHHHHH
Confidence 344444433
No 204
>PRK11396 hypothetical protein; Provisional
Probab=43.13 E-value=3.3e+02 Score=26.77 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=57.9
Q ss_pred ccCCCceEEEecCCCCCC-CccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCc
Q 040805 351 HSNNFGELFEADSNDFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSST 429 (540)
Q Consensus 351 ~~n~~G~~~~~~~~~~p~-L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~ 429 (540)
.+|.+|..+++- -+|. ..+.+..++.++|...|-+..+ |.-..++.|++|.|..=.+.. .
T Consensus 14 WkNGgG~TrEI~--~~P~~~~dF~WRiSiA~I~~~GpFS~F--pGidR~i~lL~G~g~~L~~~~-~-------------- 74 (191)
T PRK11396 14 WRNAAGETREIC--TFPPAKRDFYWRASIASIAANGEFSLF--PGMERIVTLLEGGEMFLESAD-R-------------- 74 (191)
T ss_pred ccCCCeEEEEEE--EcCCCCCCceEEEEEEEecCCCCCCCC--CCccEEEEEEECCCEEEeeCC-c--------------
Confidence 678888877774 2333 2455778888888899988876 789999999999665432221 1
Q ss_pred cccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 430 REEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 430 ~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
....|++++.+.++-..+.....
T Consensus 75 ----------~~~~l~~~~p~~F~Gd~~v~a~L 97 (191)
T PRK11396 75 ----------FNHTLKPLQPFAFAADQVVKAKL 97 (191)
T ss_pred ----------cceecCCCCCeEeCCCCeeEEEE
Confidence 11346678888888888876543
No 205
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=41.84 E-value=75 Score=33.03 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805 198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
-.+-+++|..|...+.. + +..+..+.++.++++|.+..|.+.|...+
T Consensus 37 ~~~~li~v~~G~~~i~~--~-~g~~l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 37 LQSVLIKLTTGKISITT--S-SGEYITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred cceEEEEeccceEEEEe--C-CCceEEeCCCeEEEEeCCcEEEEEecccC
Confidence 36678999999887664 2 33567899999999999999999997633
No 206
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=41.42 E-value=19 Score=29.09 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.2
Q ss_pred cchhHHHHHHHHHHHHHhhh
Q 040805 3 RKLCFTLFTLSVLVLCAGLA 22 (540)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (540)
-.||+++||+++|+-+|++-
T Consensus 2 nn~Si~VLlaLvLIg~fAVq 21 (71)
T PF04202_consen 2 NNLSIAVLLALVLIGSFAVQ 21 (71)
T ss_pred CchhHHHHHHHHHHhhheee
Confidence 46899999987777776654
No 207
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=39.84 E-value=2.2e+02 Score=27.73 Aligned_cols=74 Identities=3% Similarity=-0.131 Sum_probs=47.4
Q ss_pred EEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC--
Q 040805 377 SYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA-- 454 (540)
Q Consensus 377 ~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa-- 454 (540)
....+.+|-++...= -....+.+|++|.+++..+..+|. ..+..-+.+||+|-...
T Consensus 32 ~~~~~~kge~l~~~G-~~~~~~y~V~~G~v~v~~~~~~G~---------------------e~~~~~~~~g~~~G~~~~~ 89 (226)
T PRK10402 32 ELFHFLAREYIVQEG-QQPSYLFYLTRGRAKLYATLANGK---------------------VSLIDFFAAPCFIGEIELI 89 (226)
T ss_pred hheeeCCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCC---------------------EeeeeecCCCCeEEeehhh
Confidence 344566776664443 456779999999999999888763 34446688999887543
Q ss_pred ---CCeEEEEecCCCCEEEEEEE
Q 040805 455 ---GHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 ---G~~h~~~n~~~e~l~~v~F~ 474 (540)
-+++++.+. ++..++.+.
T Consensus 90 ~~~~~~~~~~A~--~~~~i~~i~ 110 (226)
T PRK10402 90 DKDHETKAVQAI--EECWCLALP 110 (226)
T ss_pred cCCCCCccEEEe--ccEEEEEEE
Confidence 233344444 345555553
No 208
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=39.82 E-value=1.1e+02 Score=26.42 Aligned_cols=32 Identities=3% Similarity=0.043 Sum_probs=21.4
Q ss_pred EEeeeeCCCcEEEECCCCeEEEEecCCCCEEEE
Q 040805 439 KVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVV 471 (540)
Q Consensus 439 ~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v 471 (540)
.....++.||.+++|......+... ++.+.++
T Consensus 54 ~~~~~vk~GD~Vlf~~~~g~ev~~~-~~~y~iv 85 (95)
T PRK00364 54 RVPLDVKVGDKVLFGKYAGTEVKID-GEEYLIL 85 (95)
T ss_pred EeecccCCCCEEEEcCCCCeEEEEC-CEEEEEE
Confidence 3445799999999998776655443 4444444
No 209
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.36 E-value=25 Score=32.75 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHhhhhccCCchhHHH
Q 040805 4 KLCFTLFTLSVLVLCAGLALATKDPELKQC 33 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~dp~~~~c 33 (540)
||.++.+|.+.++||..++ +..+|||.|-
T Consensus 3 rf~~i~lL~~A~lls~plv-a~e~peldWl 31 (166)
T COG3495 3 RFTSITLLAAALLLSAPLV-AAETPELDWL 31 (166)
T ss_pred hhHHHHHHHHHHHhcchhh-hcccccccHH
Confidence 4555555555555554444 4478887763
No 210
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=35.70 E-value=2.3e+02 Score=22.78 Aligned_cols=56 Identities=5% Similarity=0.024 Sum_probs=38.0
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
+....+.+|.++... +...+.+.+|++|...+....+++. ..+...+.+|+++-.+
T Consensus 17 ~~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 17 LEERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGR---------------------EQIVGFLGPGDLFGEL 72 (115)
T ss_pred ceeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCc---------------------EEEEEecCCccCcChH
Confidence 345566777765332 2345779999999999988777652 3445678899987553
No 211
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=35.50 E-value=1.4e+02 Score=29.56 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=39.5
Q ss_pred CccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805 369 LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 369 L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~ 414 (540)
.++-.+++...-|.+|+.+.+|=||.=+-+.-|+.|+..+...+--
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~ 84 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWV 84 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEcccc
Confidence 3444688888899999999999999999999999999999866654
No 212
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.12 E-value=14 Score=43.32 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.9
Q ss_pred eeCCCcccccccc-CCCeEEEEEeeE-----EEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 185 IANPQTFVTPTHL-DADAVFFVSWGQ-----GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 185 ~l~Pggl~~Ph~~-~A~ei~yV~~G~-----g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
..+-|.-+.|-|+ =.+.-+|+-.+- ...|| ...++.=.-||+|+||||.+|-+.|.-
T Consensus 761 ~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV----e~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 761 CKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV----EPWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred hHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC----CccchhhcccceEEecCCCcHHhhhhh
Confidence 3444444555554 356666665541 11121 234566688999999999999999975
No 213
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=33.84 E-value=31 Score=32.50 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhhhhccCCc-hhHHHHH
Q 040805 4 KLCFTLFTLSVLVLCAGLALATKDP-ELKQCKH 35 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~dp-~~~~c~~ 35 (540)
++|+..+++|+|+|+++.|. -++ ++++|..
T Consensus 2 ~ms~~~~v~l~alls~a~aq--~~~t~~k~C~s 32 (158)
T KOG4063|consen 2 MMSFLKTVILLALLSLAAAQ--AISTGVKQCGS 32 (158)
T ss_pred chHHHHHHHHHHHHHHhhhc--ccCcccccccC
Confidence 45666666666666665553 233 4666654
No 214
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.63 E-value=1.5e+02 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=38.4
Q ss_pred eeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 185 IANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 185 ~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
.+.||... + .-++|+.-|+.|...+-+ |+...=....+|.+|-||+..-+-+.=
T Consensus 29 Vm~~geyt---FgTa~~E~Mtvv~Gal~v~l--pgs~dWq~~~~Ge~F~VpgnS~F~lqV 83 (94)
T COG3123 29 VMAPGEYT---FGTAAPEEMTVVSGALTVLL--PGSDDWQVYTAGEVFNVPGNSEFDLQV 83 (94)
T ss_pred EEeceeEE---eccCCceEEEEEeeEEEEEc--CCCcccEEecCCceEEcCCCCeEEEEE
Confidence 44555441 2 357899999999886555 665555678999999999977666544
No 215
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=33.57 E-value=70 Score=31.23 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=36.4
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce-EEeeCCCcEEE
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE-SYNVKRGDIIR 232 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~~~l~~GDv~~ 232 (540)
..+++|..+..--..++.+++|++|.+.+.....++.. ...+.+||++-
T Consensus 33 ~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 33 QRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred eecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 46788887765556688999999999998876554433 34678899764
No 216
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=33.42 E-value=96 Score=26.48 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred eCCCccccccccC-CCeEE-EEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 186 ANPQTFVTPTHLD-ADAVF-FVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 186 l~Pggl~~Ph~~~-A~ei~-yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
-..+|+.+|.-.. ..... .|.-|.|... ..+......|+.||.+++|......+...+ +++.++
T Consensus 19 ~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~--~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~--~~~~~~ 84 (93)
T PF00166_consen 19 KTASGIILPESAKEKPNQGKVVAVGPGRYN--ENGEEVPMDVKVGDKVLFPKYAGTEVKFDG--EKYLIV 84 (93)
T ss_dssp TCTTSCCE-CCSSSSEEEEEEEEE-SEEET--TTSSEEETSS-TTSEEEEETTTSEEEEETT--EEEEEE
T ss_pred eecceEEeccccccccceeEEEEcCCcccc--CCCcEeeeeeeeccEEeccccCceEEEECC--EEEEEE
Confidence 3567888883322 22232 3334554433 112223568999999999998877776643 445544
No 217
>PF15279 SOBP: Sine oculis-binding protein
Probab=33.36 E-value=24 Score=37.08 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=25.1
Q ss_pred HHHHHHHH----HhhccCHHHHHHHHHHHHHHHHHHH
Q 040805 31 KQCKHQCR----ARQQYDEKQKEQCARTCEEYYKEKE 63 (540)
Q Consensus 31 ~~c~~~c~----~~~~~~~~~~~~c~~~c~~~~~~~~ 63 (540)
.||||-=- +.-|-|++|.+-|-.+|..+||.+-
T Consensus 3 dwckh~rh~~~y~d~~~g~~~lqfcs~kclnqykm~i 39 (306)
T PF15279_consen 3 DWCKHVRHTKSYVDFQDGERQLQFCSDKCLNQYKMDI 39 (306)
T ss_pred cchhcccchhheeccccchHHhhhccHHHHhHHHHHH
Confidence 48887432 2335589999999999999999864
No 218
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=33.27 E-value=1.3e+02 Score=25.84 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=20.6
Q ss_pred EeeeeCCCcEEEECCCCeEEEEecCCCCEEEE
Q 040805 440 VSSRIRTDSAYIVPAGHPVVTVASQNNNLEVV 471 (540)
Q Consensus 440 ~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v 471 (540)
....++.||.+++|.+....+... ++.+.++
T Consensus 54 ~~~~vk~GD~Vl~~~~~g~~v~~~-~~~y~i~ 84 (93)
T cd00320 54 VPLSVKVGDKVLFPKYAGTEVKLD-GEEYLIL 84 (93)
T ss_pred ccccccCCCEEEECCCCceEEEEC-CEEEEEE
Confidence 335799999999999775554443 3444443
No 219
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=33.15 E-value=58 Score=34.36 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.9
Q ss_pred ceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 437 YHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 437 ~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
|+-+.-...+|.+++||.|+.|.++|-
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNl 286 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNL 286 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEecc
Confidence 455556789999999999999999886
No 220
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=32.89 E-value=1.7e+02 Score=29.96 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCCccccccccC--CCeEEEEEeeEEEEEEEecCCce--EEeeCC-CcEEEECCCCeEEEEeCCCC
Q 040805 187 NPQTFVTPTHLD--ADAVFFVSWGQGTITVIRENNRE--SYNVKR-GDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 187 ~Pggl~~Ph~~~--A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~-GDv~~iPaG~~h~~~N~g~~ 247 (540)
-|++++.||-+. .-+.+-|++|+..+-+.++.+.. ...|.+ ++..+||++.-|.+.-..++
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d 84 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDD 84 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCC
Confidence 488888888764 45678999999888887766542 344544 45657999999999886433
No 221
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=32.54 E-value=3.9e+02 Score=28.08 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=51.4
Q ss_pred EEEecCCCCCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCcc
Q 040805 358 LFEADSNDFRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSAT 436 (540)
Q Consensus 358 ~~~~~~~~~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~ 436 (540)
++++....-+.++. |+++-....+ ++| ..-.||++.+.+++--+|...++--+-
T Consensus 119 L~TvCGaGd~~sr~-GlAIH~~~cN-~sM~~safyNsDGDFLiVPQ~G~L~I~TEfG----------------------- 173 (446)
T KOG1417|consen 119 LHTVCGAGDSFSRH-GLAIHIYSCN-TSMENSAFYNSDGDFLIVPQQGRLWITTEFG----------------------- 173 (446)
T ss_pred cceeccCCCccccc-ceEEEEEeec-CCcccceeecCCCCEEEecccCcEEEEeecc-----------------------
Confidence 34555554455443 5655444333 444 577899999988888888777763332
Q ss_pred ceEEeeeeCCCcEEEECCCCeEEEEecC
Q 040805 437 YHKVSSRIRTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 437 ~~~~~~~l~~GDV~vVPaG~~h~~~n~~ 464 (540)
+. -|.++.+.|||+|.-+.+.-.+
T Consensus 174 -rl---lV~P~EI~VIpqG~RFsi~v~~ 197 (446)
T KOG1417|consen 174 -RL---LVTPNEIAVIPQGIRFSIDVPG 197 (446)
T ss_pred -ce---eecccceEEeecccEEEEecCC
Confidence 23 3889999999999998875443
No 222
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=32.52 E-value=59 Score=26.13 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHH-HHhhhh-ccCCch--hHHHHH
Q 040805 4 KLCFTLFTLSVLVL-CAGLAL-ATKDPE--LKQCKH 35 (540)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~-~~~dp~--~~~c~~ 35 (540)
.+.+.+|+|++.-| |+-++. +..|+. |.+|-.
T Consensus 3 elLvsLfFFSLM~LlSs~l~p~~~~d~~kaldiCae 38 (64)
T PF03511_consen 3 ELLVSLFFFSLMGLLSSYLAPKEGADSLKALDICAE 38 (64)
T ss_pred chHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHH
Confidence 34556666666666 666664 446774 777754
No 223
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=32.29 E-value=1.1e+02 Score=28.53 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=37.8
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEECC
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVPS 235 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iPa 235 (540)
...+.+|..+...=-.++.+++|++|...+....+++.+ ...+.+||+|-.++
T Consensus 25 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 25 VRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred eEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 346677755433333577799999999999998887543 34589999997664
No 224
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=32.18 E-value=3.5e+02 Score=27.60 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred cCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccc
Q 040805 352 SNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTRE 431 (540)
Q Consensus 352 ~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~ 431 (540)
....|.+..+++.+ +.+.- +++..+.|.+|.-..--- .+--.+++++.|.+.+..-...-.. =|.
T Consensus 10 ~~~~g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~-~~~E~clV~v~Gk~~vs~~g~~f~~-----iG~------ 74 (270)
T COG3718 10 PAGVGLVQDVTPES-AGWEY--VGFRLLRLAAGESATEET-GDRERCLVLVTGKATVSAHGSTFGE-----IGT------ 74 (270)
T ss_pred CCCCcceEEecCCC-CCcee--EEEEEEEccCCCcccccC-CCceEEEEEEeeeEEEeeccchHhh-----ccc------
Confidence 35678888888543 44443 667778999999887765 3444578888999888643321100 000
Q ss_pred cCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEE-EEE
Q 040805 432 EGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV-VCF 473 (540)
Q Consensus 432 ~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~-v~F 473 (540)
|.--+.=++=|.++||.|-.+.+.|..+ +++ ||-
T Consensus 75 ------R~SvFe~~p~~~vYvp~g~~~~vtA~t~--~~vAvC~ 109 (270)
T COG3718 75 ------RMSVFERKPPDSVYVPAGSAFSVTATTD--LEVAVCS 109 (270)
T ss_pred ------ccccccCCCCCeEEecCCceEEEEeecc--eEEEEEe
Confidence 1111233466999999999999888753 443 454
No 225
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=32.02 E-value=45 Score=31.81 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=36.6
Q ss_pred ccCccccccccccccceeeeeeeCCCcccc-------cccc--CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEE
Q 040805 164 PKFTQRSKLLRGLEKYRLGILIANPQTFVT-------PTHL--DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRV 233 (540)
Q Consensus 164 ~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~-------Ph~~--~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~i 233 (540)
.+|..-++.++|+...++ .+.+|+.+. --|+ .|+-|+.+..|.. +++|+- + ..|++||+++|
T Consensus 73 ~~f~~~~~~~p~l~~~~~---~i~~~s~~~GksiGdl~irq~TGaTIIAI~r~~e~---I~SPgP-y-~vle~gDtlvv 143 (162)
T COG0490 73 ERFEQTEPALPGLIIEWF---KIEAGSPFIGKTIGDLNIRQNTGATVIAIVRNEEK---ILSPGP-Y-TVLEAGDTLVV 143 (162)
T ss_pred HHHHhhhhccccchheee---eeecCCcccCcchhhcccccccCcEEEEEEecCcE---ecCCCc-h-hhhcCCCEEEE
Confidence 345555567777766666 666666432 1243 4666667776663 445542 3 56788887765
No 226
>PHA02890 hypothetical protein; Provisional
Probab=31.28 E-value=2.1e+02 Score=29.35 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=43.0
Q ss_pred EEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 397 KVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 397 ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
-.+.+++|+..+.+...+ +..+.++.+||.|.+--+.-|.+.. .+-.|.++-+.++
T Consensus 94 ~FVlCL~Gs~~In~~~~d-----------------------~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Viky~vd 149 (278)
T PHA02890 94 FFVACIEGSCKINVNIGD-----------------------REISDHIHENQGFIMDVGLDHAIDS-DNVGLFITKFEVD 149 (278)
T ss_pred EEEEEeCCeEEEEEecCC-----------------------ceeeeeeecCceEEEEccceEEEEc-cceeEEEEEEEec
Confidence 356678899998876653 3566789999999999999999876 4445566667666
Q ss_pred C
Q 040805 477 A 477 (540)
Q Consensus 477 a 477 (540)
.
T Consensus 150 ~ 150 (278)
T PHA02890 150 A 150 (278)
T ss_pred c
Confidence 5
No 227
>PHA02890 hypothetical protein; Provisional
Probab=31.18 E-value=1.8e+02 Score=29.87 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=44.4
Q ss_pred CCeEEE--EEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 199 ADAVFF--VSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 199 A~ei~y--V~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
+.|-+| +++|++.|-.-..+...+.++.+||.|.+--++-|.+.- .+ |.++.+-..++.|
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T--Kn--l~L~Viky~vd~p 151 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS--DN--VGLFITKFEVDAH 151 (278)
T ss_pred eccEEEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc--cc--eeEEEEEEEecce
Confidence 445544 679999999877777789999999999999999999966 24 4444343345543
No 228
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=30.58 E-value=98 Score=28.88 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 198 DADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 198 ~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
.++.+++|++|.+.+..+++++.+ ...+.+||+|-.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 367899999999999998887665 357899998743
No 229
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=30.52 E-value=1.1e+02 Score=29.75 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=37.5
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce-E-EeeCCCcEEEEC
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE-S-YNVKRGDIIRVP 234 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~-~~l~~GDv~~iP 234 (540)
.+++|..+...--..+.++||++|.+.+-..++++.+ . .-+.+||++-.+
T Consensus 41 ~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~ 92 (235)
T PRK11161 41 PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD 92 (235)
T ss_pred eecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccc
Confidence 5678877665555688999999999999888776554 3 345899998643
No 230
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=30.51 E-value=75 Score=30.96 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=37.4
Q ss_pred CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 199 A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
...+..-+.|+|.+-+...+.....+|.+|+-++|.++.+..+.+
T Consensus 129 ~g~~~~~l~G~G~v~l~~~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 129 EGLFMLKLSGRGTVFLSGYGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp S-EEEEEEESSCEEEEEECCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred CCcEEEEEEEEEEEEEEeCCcEEEEEccCCceEEEcCCCEEEECC
Confidence 345567799999999999888899999999999999999888855
No 231
>PLN02868 acyl-CoA thioesterase family protein
Probab=30.24 E-value=1.2e+02 Score=32.93 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=38.8
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~i 233 (540)
+..+++|.++...=-..+.+++|++|++.+.....++. ....+.+||+|-.
T Consensus 33 ~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 33 PKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred EEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 35778888765555568889999999999888776543 3457799999974
No 232
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=28.40 E-value=71 Score=31.80 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=35.6
Q ss_pred CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805 395 STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 395 A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~ 461 (540)
..+|.|-.+|.-.+-|+..... + +--+++||+|.+|+..+|.-.
T Consensus 53 geE~FyQ~KGdMvLKVie~g~~---------------------r--DivI~qGe~flLParVpHSPq 96 (279)
T KOG3995|consen 53 GEEVFYQLKGDMVLKVLEQGKH---------------------R--DVVIRQGEIFLLPARVPHSPQ 96 (279)
T ss_pred cchhheeecCceEEeeeccCcc---------------------e--eeEEecCcEEEeccCCCCChh
Confidence 5569999999999999987532 2 335899999999999999754
No 233
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=28.00 E-value=2.7e+02 Score=27.62 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=42.9
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV 241 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~ 241 (540)
+.|++++.+.||-.++-|.|-.=|.+.|+.| ++-++++ .+..||++--+-++-|.-
T Consensus 127 s~~V~llki~~g~s~P~HtH~G~E~t~vl~G----~~sde~G----~y~vgD~~~~d~~v~H~p 182 (216)
T COG3806 127 SRRVALLKIEPGRSFPDHTHVGIERTAVLEG----AFSDENG----EYLVGDFTLADGTVQHSP 182 (216)
T ss_pred CceeEEEEeccCcccccccccceEEEEEEee----ccccCCC----ccccCceeecCCcccccc
Confidence 4578888999999977776777788888887 4444444 678888888888888873
No 234
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=27.92 E-value=3.3e+02 Score=22.05 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=37.7
Q ss_pred EEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 400 VVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 400 yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
+...|...++|.+.++. ..+...|++||.+-++..-+..+.-+ +...+-|.+
T Consensus 3 l~a~~~sWv~V~d~dG~---------------------~~~~~~l~~G~~~~~~~~~~~~i~iG-na~~v~v~~ 54 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGK---------------------VLFSGTLKAGETKTFEGKEPFRIRIG-NAGAVEVTV 54 (77)
T ss_pred EEEeCCeEEEEEeCCCc---------------------EeeeeeeCCCcEEEEeCCCCEEEEEe-CCCcEEEEE
Confidence 44557888888877763 56778899999999988888886554 544444444
No 235
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=26.12 E-value=3.2e+02 Score=22.01 Aligned_cols=56 Identities=5% Similarity=0.016 Sum_probs=36.9
Q ss_pred EEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 377 SYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 377 ~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
....+.+|-.+. +-.-.++.+.+|++|...+.....++. ..+...+.+||+|-...
T Consensus 18 ~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~g~~~ 73 (120)
T smart00100 18 EPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGR---------------------EQILGILGPGDFFGELA 73 (120)
T ss_pred eEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCc---------------------eEEEEeecCCceechhh
Confidence 345666776542 222356779999999998887665442 34456789999885543
No 236
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=25.47 E-value=1.3e+02 Score=29.02 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeE
Q 040805 198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTF 239 (540)
Q Consensus 198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h 239 (540)
...-++|++.|...++. ......|.+||.+++-.....
T Consensus 134 ~~~~l~~~~~G~~~i~~----~~~~~~L~~~d~l~~~~~~~~ 171 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITE----GGNCISLSAGDLLLIDDEEDL 171 (184)
T ss_dssp -SEEEEEESSS-EEECC----CEEEEEE-TT-EEEEESEECE
T ss_pred CCEEEEEEeeCcEEEec----CCCceEcCCCCEEEEeCCCce
Confidence 45667899999765442 356789999999988775444
No 237
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=25.23 E-value=2.2e+02 Score=24.96 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=37.6
Q ss_pred eCCCccccccccC--CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 186 ANPQTFVTPTHLD--ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 186 l~Pggl~~Ph~~~--A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
-..||+.+|--.. ..+=-.|.-|.| +.-..+......|+.||.+++....-.-+...| +++.++
T Consensus 20 kT~gGIvlpdsakeK~~~g~VvAVG~G--~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dg--eeylil 85 (96)
T COG0234 20 KTAGGIVLPDSAKEKPQEGEVVAVGPG--RRDENGELVPLDVKVGDRVLFGKYAGTEVKIDG--EEYLIL 85 (96)
T ss_pred cccCcEEecCccccCCcceEEEEEccc--eecCCCCEeccccccCCEEEECccCCcEEEECC--EEEEEe
Confidence 3578888888542 222223333433 121222334678999999999987776665544 445544
No 238
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=24.64 E-value=1.4e+02 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=29.6
Q ss_pred CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
.++.+.+|++|..++....++|. ..+-..+.+||+|-.+
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~---------------------e~~l~~~~~g~~~G~~ 48 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGE---------------------EITVALLRENSVFGVL 48 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCc---------------------EeeeEEccCCCEeeee
Confidence 35569999999999999988763 3444678999987543
No 239
>PHA02984 hypothetical protein; Provisional
Probab=23.94 E-value=3.1e+02 Score=28.39 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=41.3
Q ss_pred cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEE--EEEE
Q 040805 396 TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLE--VVCF 473 (540)
Q Consensus 396 ~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~--~v~F 473 (540)
--.+.++.|+..+.+...+ +..+.++.+|+.|.+--+.-|.+... +.++. ++.+
T Consensus 94 y~FvlCl~G~~~I~~~~~~-----------------------~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~Vi~y 149 (286)
T PHA02984 94 YMFVLCLNGKTSIECFNKG-----------------------SKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAVITY 149 (286)
T ss_pred EEEEEEcCCeEEEEEecCC-----------------------ceeeeEEecCceEEEEccceEEEEeC-CCceEEEEEEE
Confidence 3466678888888866653 35667899999999999999997654 44544 4455
Q ss_pred EecC
Q 040805 474 EINA 477 (540)
Q Consensus 474 ~~~a 477 (540)
.+++
T Consensus 150 ~v~~ 153 (286)
T PHA02984 150 TSNC 153 (286)
T ss_pred Eecc
Confidence 5554
No 240
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=23.48 E-value=3e+02 Score=26.67 Aligned_cols=53 Identities=8% Similarity=-0.079 Sum_probs=36.9
Q ss_pred EEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 379 ~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
..+.+|-++...= -.++.+.+|++|..++-...+++. .++..-+.+||++-.+
T Consensus 40 ~~~~kge~l~~~G-d~~~~ly~v~~G~v~~~~~~~~G~---------------------e~i~~~~~~gd~~g~~ 92 (235)
T PRK11161 40 KPIQKGQTLFKAG-DELKSLYAIRSGTIKSYTITEQGD---------------------EQITGFHLAGDLVGFD 92 (235)
T ss_pred eeecCCCEeECCC-CCcceEEEEeeceEEEEEECCCCC---------------------EEEEEeccCCceeccc
Confidence 3566666554443 346779999999999998888763 3444556899998543
No 241
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=22.93 E-value=1.4e+02 Score=27.52 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=44.6
Q ss_pred cccccccceeeeeeeCCCccccccccCCCeEEEEEee----EEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 172 LLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWG----QGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 172 ~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G----~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
+-+|+.|+-+.++.|++|....- -+.+++...+-| ...+++-+.. --.+++||++.+-.|++-++.|
T Consensus 10 i~P~~kN~~v~fIvl~~g~~tkT--kdg~~v~~~kVaD~TgsI~isvW~e~---~~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 10 IKPGLKNINVTFIVLEYGRATKT--KDGHEVRSCKVADETGSINISVWDEE---GCLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred cChhhhcceEEEEEEeeceeeec--cCCCEEEEEEEecccceEEEEEecCc---CcccCCccEEEecccchhhhcC
Confidence 44588888999999999865322 345555544433 3334443321 1468999999999999888866
No 242
>PLN03207 stomagen; Provisional
Probab=22.51 E-value=91 Score=27.33 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=3.7
Q ss_pred cchhHHHHH
Q 040805 3 RKLCFTLFT 11 (540)
Q Consensus 3 ~~~~~~~~~ 11 (540)
+++++.||+
T Consensus 9 tt~~~~lff 17 (113)
T PLN03207 9 TTRCLTLFF 17 (113)
T ss_pred cchhHHHHH
Confidence 344444443
No 243
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.71 E-value=99 Score=24.69 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=10.6
Q ss_pred CCcchhHHHHHHHHHHH
Q 040805 1 MNRKLCFTLFTLSVLVL 17 (540)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (540)
|-.||.++.||+..|+.
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 55677776666555544
No 244
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=21.47 E-value=1.1e+02 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.6
Q ss_pred ccCCHHHHHHhcCCCHHHHHHHhcc
Q 040805 281 RAFSWEILESAFKTKRDSLERVLFQ 305 (540)
Q Consensus 281 ~~f~~evLa~Af~v~~~~v~~l~~~ 305 (540)
.|++..-+++.|||+..+|-+++..
T Consensus 20 ~G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 20 EGMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp TT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 4789999999999999999998865
No 245
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=21.42 E-value=3.4e+02 Score=28.22 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=42.3
Q ss_pred cceeeeeeeCCCc---cccccccC-CCe-EEEEEeeEEEEEEEecCCc-eE--EeeCCCcEEEECCCCeEEEEeCC
Q 040805 178 KYRLGILIANPQT---FVTPTHLD-ADA-VFFVSWGQGTITVIRENNR-ES--YNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 178 ~~rl~~~~l~Pgg---l~~Ph~~~-A~e-i~yV~~G~g~ig~V~~~~~-~~--~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.+-+++..+.||+ ..+||.|+ ..| .+|.--...-..+-..+.. ++ ..|+-+|++++|+=.+|.=..|+
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~gt~ 249 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGVGTS 249 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCcCcc
Confidence 3445556789998 35888886 344 4444333321122222222 34 78999999999998888876654
No 246
>PF15069 FAM163: FAM163 family
Probab=21.14 E-value=87 Score=29.27 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=4.0
Q ss_pred HHHHHHHh
Q 040805 58 YYKEKEQR 65 (540)
Q Consensus 58 ~~~~~~~~ 65 (540)
||=.||.+
T Consensus 32 YYCCKK~~ 39 (143)
T PF15069_consen 32 YYCCKKNE 39 (143)
T ss_pred HHHhhccC
Confidence 45555543
No 247
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=20.75 E-value=1e+02 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=25.4
Q ss_pred CCcccccccCCCc--EEEEEEeceEEEEEEcCC
Q 040805 384 GAMAAPFYNSRST--KVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 384 ggm~~PH~h~~A~--ei~yV~~G~g~v~vv~p~ 414 (540)
||++.-+|.|... .++.+++..+++.|++..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 5666677766555 899999999999999985
No 248
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=20.59 E-value=3.3e+02 Score=23.47 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=34.4
Q ss_pred CCCcccccccc-CCCeEEE-EEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 187 NPQTFVTPTHL-DADAVFF-VSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 187 ~Pggl~~Ph~~-~A~ei~y-V~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
..+|+.+|.-. ....... |.-|.|... ..+......++.||.+++|......+.. + +++..++
T Consensus 21 T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~--~~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~-~~~y~iv 85 (95)
T PRK00364 21 TAGGIVLPDSAKEKPQEGEVVAVGPGRRL--DNGERVPLDVKVGDKVLFGKYAGTEVKI-D-GEEYLIL 85 (95)
T ss_pred ccceEEcCccccCCcceEEEEEECCCeEC--CCCCEeecccCCCCEEEEcCCCCeEEEE-C-CEEEEEE
Confidence 45778888753 2333332 224444321 1222335679999999999755444433 3 3455544
No 249
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=20.30 E-value=55 Score=29.45 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=14.4
Q ss_pred CCcchhHHHHHHHHHHHHHhhh
Q 040805 1 MNRKLCFTLFTLSVLVLCAGLA 22 (540)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (540)
|++||.++++++++|++++++.
T Consensus 4 I~~KL~~~f~~~~~l~~~~~~~ 25 (181)
T PF12729_consen 4 IRTKLILGFGLIILLLLIVGIV 25 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887766666644433
No 250
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=20.23 E-value=56 Score=29.23 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=28.0
Q ss_pred CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECC
Q 040805 199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS 235 (540)
Q Consensus 199 A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPa 235 (540)
+-...||+.|+.=.|++.-++.-...+.+||.++|=+
T Consensus 52 ~Rf~TYvI~g~~gSg~I~lNGAAAr~~~~GD~vII~s 88 (111)
T cd06919 52 ARFETYVIPGERGSGVICLNGAAARLGQPGDRVIIMA 88 (111)
T ss_pred cEEEEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 3355899999855566666777778899999998854
No 251
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=20.11 E-value=1.8e+02 Score=24.70 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.2
Q ss_pred CCHHHHHHHcCCCHHHHHHhh
Q 040805 495 MESEAKELAFNTRADEVERVF 515 (540)
Q Consensus 495 ~~~evla~AF~vs~e~v~kl~ 515 (540)
-.+.-|+.+|+++.++++.|.
T Consensus 55 ee~gyl~~~f~l~~eea~eL~ 75 (81)
T PF11256_consen 55 EEPGYLEHAFGLSEEEAEELR 75 (81)
T ss_pred ccccHHHHHhCCCHHHHHHHH
Confidence 367889999999999999885
No 252
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=20.03 E-value=7.6e+02 Score=23.47 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=40.4
Q ss_pred eEEEEEEcCCCcccccccCC-CcEEEEEEec-eEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE--E
Q 040805 375 TVSYANISKGAMAAPFYNSR-STKVAVVVAG-DGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA--Y 450 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~-A~ei~yV~~G-~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV--~ 450 (540)
.+.+.-|+++.+. |||-. |++|-+...| .+.+-|+. +|.. .+ -++-..|+.|.+ +
T Consensus 45 T~IYyLLe~~~~s--~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~-----------------~s-~~LG~d~~~Ge~~Q~ 103 (162)
T COG3542 45 TAIYYLLEEDNIS--AWHRVTADEIWHFYAGAPLELHLSE-DGGA-----------------ES-FTLGPDLEKGERPQY 103 (162)
T ss_pred EEEEEEecCCccc--hheecchhheEEEecCCceEEEEEe-CCCe-----------------EE-EEecccccCCceeEE
Confidence 3556667787744 66665 8887777766 57777777 4421 11 244456777876 6
Q ss_pred EECCCCeE
Q 040805 451 IVPAGHPV 458 (540)
Q Consensus 451 vVPaG~~h 458 (540)
|||+|...
T Consensus 104 vVP~g~w~ 111 (162)
T COG3542 104 VVPAGTWW 111 (162)
T ss_pred EEeCCcEE
Confidence 99999443
Done!