Query 040805
Match_columns 540
No_of_seqs 280 out of 1801
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s7i_A Allergen ARA H 1, clone 100.0 6.7E-82 2.3E-86 671.4 34.5 379 145-527 10-418 (418)
2 2cav_A Protein (canavalin); vi 100.0 1.6E-78 5.5E-83 651.1 37.9 371 145-529 52-424 (445)
3 2ea7_A 7S globulin-1; beta bar 100.0 2.8E-76 9.7E-81 632.2 39.8 373 145-529 26-411 (434)
4 1uij_A Beta subunit of beta co 100.0 1.8E-75 6.2E-80 623.5 36.9 373 146-529 16-395 (416)
5 3qac_A 11S globulin SEED stora 100.0 7E-74 2.4E-78 613.9 34.9 349 149-528 24-454 (465)
6 3kgl_A Cruciferin; 11S SEED gl 100.0 1.5E-73 5E-78 611.6 36.5 350 150-528 18-454 (466)
7 3ksc_A LEGA class, prolegumin; 100.0 2.1E-72 7.3E-77 606.6 38.0 348 150-528 21-489 (496)
8 2phl_A Phaseolin; plant SEED s 100.0 8.4E-73 2.9E-77 597.9 30.8 359 145-537 17-391 (397)
9 2e9q_A 11S globulin subunit be 100.0 1.1E-70 3.8E-75 591.3 35.1 347 151-528 39-453 (459)
10 3fz3_A Prunin; TREE NUT allerg 100.0 2E-70 6.9E-75 590.4 34.6 347 151-528 24-525 (531)
11 1fxz_A Glycinin G1; proglycini 100.0 3E-67 1E-71 567.3 38.6 348 150-528 23-469 (476)
12 3c3v_A Arachin ARAH3 isoform; 100.0 5.9E-67 2E-71 566.4 37.3 348 150-528 23-503 (510)
13 2d5f_A Glycinin A3B4 subunit; 100.0 8.7E-63 3E-67 534.2 34.9 345 150-526 20-493 (493)
14 2vqa_A SLL1358 protein, MNCA; 100.0 3.7E-41 1.3E-45 351.3 35.7 323 153-524 31-357 (361)
15 1j58_A YVRK protein; cupin, de 100.0 6.8E-35 2.3E-39 307.0 30.6 316 153-518 58-375 (385)
16 1dgw_A Canavalin; duplicated s 100.0 2.9E-35 1E-39 279.6 20.0 171 145-315 7-178 (178)
17 3ksc_A LEGA class, prolegumin; 100.0 1.5E-29 5.2E-34 273.1 16.7 178 343-525 14-227 (496)
18 3kgl_A Cruciferin; 11S SEED gl 100.0 8.9E-28 3E-32 257.6 17.4 182 343-527 11-256 (466)
19 1dgw_A Canavalin; duplicated s 99.9 3.2E-27 1.1E-31 224.2 17.0 161 339-525 3-176 (178)
20 3qac_A 11S globulin SEED stora 99.9 1.8E-27 6.1E-32 255.1 16.2 180 343-526 18-247 (465)
21 2d5f_A Glycinin A3B4 subunit; 99.9 5E-27 1.7E-31 254.4 16.4 183 340-525 10-239 (493)
22 3fz3_A Prunin; TREE NUT allerg 99.9 5.4E-27 1.8E-31 253.1 15.4 179 343-524 16-305 (531)
23 2e9q_A 11S globulin subunit be 99.9 1.3E-26 4.4E-31 249.2 16.1 179 343-527 31-246 (459)
24 1fxz_A Glycinin G1; proglycini 99.9 1.2E-25 4.1E-30 242.8 16.8 181 343-527 16-240 (476)
25 3c3v_A Arachin ARAH3 isoform; 99.9 1.6E-25 5.6E-30 242.6 15.8 181 343-526 16-281 (510)
26 2phl_A Phaseolin; plant SEED s 99.9 1E-24 3.5E-29 230.7 15.2 166 339-528 13-197 (397)
27 3s7i_A Allergen ARA H 1, clone 99.9 1.9E-24 6.4E-29 230.0 16.9 155 339-517 6-170 (418)
28 2ea7_A 7S globulin-1; beta bar 99.9 1.3E-23 4.4E-28 224.9 18.0 166 339-528 22-209 (434)
29 2cav_A Protein (canavalin); vi 99.9 4.5E-23 1.5E-27 221.3 18.4 166 339-528 48-224 (445)
30 1uij_A Beta subunit of beta co 99.9 4.3E-23 1.5E-27 219.9 15.9 166 339-528 10-192 (416)
31 1fi2_A Oxalate oxidase, germin 99.9 3.4E-22 1.2E-26 192.8 17.9 157 339-517 35-196 (201)
32 1dgw_Y Canavalin; duplicated s 99.9 1.8E-22 6E-27 171.5 11.7 90 436-527 2-92 (93)
33 1dgw_X Canavalin; duplicated s 99.9 1.3E-22 4.5E-27 167.9 7.2 76 340-415 2-77 (79)
34 2d40_A Z3393, putative gentisa 99.8 2.4E-20 8.2E-25 195.0 16.9 229 177-474 98-338 (354)
35 1juh_A Quercetin 2,3-dioxygena 99.8 7.7E-19 2.6E-23 183.2 19.7 250 185-475 53-325 (350)
36 2vqa_A SLL1358 protein, MNCA; 99.8 1.3E-18 4.5E-23 181.0 18.5 158 339-524 20-177 (361)
37 1y3t_A Hypothetical protein YX 99.8 1.4E-17 4.9E-22 170.7 23.5 242 178-476 45-292 (337)
38 1fi2_A Oxalate oxidase, germin 99.7 1.2E-17 4E-22 161.0 15.4 139 155-306 51-197 (201)
39 1rc6_A Hypothetical protein YL 99.7 9.7E-16 3.3E-20 153.1 21.9 190 180-474 60-253 (261)
40 3bu7_A Gentisate 1,2-dioxygena 99.7 1.2E-15 4.1E-20 161.0 22.5 240 178-474 122-367 (394)
41 1sef_A Conserved hypothetical 99.7 1.2E-14 4.1E-19 146.3 23.5 188 181-474 64-256 (274)
42 3rns_A Cupin 2 conserved barre 99.6 2E-14 6.8E-19 140.9 22.9 186 178-472 36-222 (227)
43 1j58_A YVRK protein; cupin, de 99.6 8.8E-16 3E-20 161.2 14.1 150 340-518 48-198 (385)
44 4e2q_A Ureidoglycine aminohydr 99.6 7.6E-14 2.6E-18 140.1 25.8 191 177-475 68-260 (266)
45 3h7j_A Bacilysin biosynthesis 99.6 3E-14 1E-18 140.9 20.7 184 180-476 35-220 (243)
46 1sq4_A GLXB, glyoxylate-induce 99.6 1.8E-13 6.2E-18 138.3 23.5 198 178-476 67-267 (278)
47 3nw4_A Gentisate 1,2-dioxygena 99.6 3.4E-13 1.1E-17 141.0 25.2 226 177-474 101-349 (368)
48 1sfn_A Conserved hypothetical 99.5 1.9E-12 6.7E-17 128.3 25.4 190 179-476 50-240 (246)
49 1dgw_Y Canavalin; duplicated s 99.4 2.4E-12 8.3E-17 109.2 11.2 86 221-314 6-91 (93)
50 1lr5_A Auxin binding protein 1 99.2 1.7E-10 5.8E-15 106.6 13.4 85 175-259 37-126 (163)
51 3l2h_A Putative sugar phosphat 99.1 3E-10 1E-14 104.7 11.7 80 175-259 42-124 (162)
52 3h8u_A Uncharacterized conserv 99.1 3E-10 1E-14 99.7 10.8 79 178-260 38-117 (125)
53 3ibm_A Cupin 2, conserved barr 99.1 6.7E-10 2.3E-14 103.8 12.6 79 177-259 54-132 (167)
54 1v70_A Probable antibiotics sy 99.1 9.3E-10 3.2E-14 92.1 11.0 75 179-258 28-103 (105)
55 2b8m_A Hypothetical protein MJ 99.1 1.2E-09 4.1E-14 94.9 12.1 94 148-256 6-100 (117)
56 2gu9_A Tetracenomycin polyketi 99.1 1.3E-09 4.3E-14 93.0 11.8 78 178-260 20-100 (113)
57 3ht1_A REMF protein; cupin fol 99.0 7.6E-10 2.6E-14 99.1 9.7 80 177-259 37-116 (145)
58 3kgz_A Cupin 2 conserved barre 99.0 1.8E-09 6.1E-14 100.0 11.1 77 178-259 43-119 (156)
59 2oa2_A BH2720 protein; 1017534 99.0 2.7E-09 9.2E-14 97.1 11.6 81 179-260 43-126 (148)
60 2fqp_A Hypothetical protein BP 99.0 1.6E-09 5.3E-14 91.6 9.2 75 178-256 17-93 (97)
61 3jzv_A Uncharacterized protein 99.0 2E-09 6.7E-14 100.8 10.8 78 177-259 51-128 (166)
62 4e2g_A Cupin 2 conserved barre 99.0 2.6E-09 8.9E-14 93.7 10.9 75 178-258 40-114 (126)
63 3fjs_A Uncharacterized protein 99.0 4E-09 1.4E-13 92.0 12.0 74 177-255 34-107 (114)
64 3i7d_A Sugar phosphate isomera 99.0 2.6E-09 8.9E-14 99.3 11.3 101 149-260 18-123 (163)
65 1x82_A Glucose-6-phosphate iso 99.0 4.3E-09 1.5E-13 100.3 12.5 81 178-259 66-156 (190)
66 2l37_A Ribosome-inactivating p 98.9 5.3E-10 1.8E-14 80.9 4.4 39 26-65 1-41 (43)
67 2f4p_A Hypothetical protein TM 98.9 6.9E-09 2.4E-13 94.6 12.6 96 178-291 47-143 (147)
68 4i4a_A Similar to unknown prot 98.9 5E-09 1.7E-13 92.1 11.3 73 179-256 34-106 (128)
69 1dgw_X Canavalin; duplicated s 98.9 9.9E-10 3.4E-14 90.6 5.7 65 150-219 10-77 (79)
70 2pfw_A Cupin 2, conserved barr 98.9 1.3E-08 4.5E-13 87.7 12.8 74 179-259 34-107 (116)
71 3myx_A Uncharacterized protein 98.9 1.9E-07 6.6E-12 92.1 22.0 183 177-463 45-228 (238)
72 3h8u_A Uncharacterized conserv 98.9 8.5E-09 2.9E-13 90.4 11.0 78 373-476 38-115 (125)
73 3cew_A Uncharacterized cupin p 98.9 1.1E-08 3.7E-13 89.9 11.6 79 177-260 24-104 (125)
74 2oa2_A BH2720 protein; 1017534 98.9 1.6E-08 5.4E-13 92.0 12.7 83 373-476 42-124 (148)
75 1vj2_A Novel manganese-contain 98.9 4.6E-09 1.6E-13 92.9 8.8 75 179-258 48-122 (126)
76 1x82_A Glucose-6-phosphate iso 98.9 1.8E-08 6E-13 96.1 13.2 82 373-476 66-155 (190)
77 1yhf_A Hypothetical protein SP 98.9 1.3E-08 4.6E-13 87.5 11.2 71 179-256 40-110 (115)
78 1v70_A Probable antibiotics sy 98.9 1.9E-08 6.6E-13 84.0 11.9 78 371-475 25-102 (105)
79 1o4t_A Putative oxalate decarb 98.9 8.1E-09 2.8E-13 92.3 10.1 72 180-256 58-130 (133)
80 2bnm_A Epoxidase; oxidoreducta 98.9 1.2E-08 4E-13 96.7 11.6 77 179-256 117-197 (198)
81 3l2h_A Putative sugar phosphat 98.9 1.9E-08 6.4E-13 92.6 12.4 78 373-477 45-124 (162)
82 3lwc_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 90.3 10.4 76 177-259 38-113 (119)
83 3lag_A Uncharacterized protein 98.8 2.6E-09 8.8E-14 91.3 5.5 75 178-255 16-92 (98)
84 1y9q_A Transcriptional regulat 98.8 1.2E-08 4.1E-13 96.4 10.5 76 179-260 104-181 (192)
85 2opk_A Hypothetical protein; p 98.8 1.6E-08 5.4E-13 88.1 10.1 66 188-257 39-109 (112)
86 2vpv_A Protein MIF2, MIF2P; nu 98.8 1.2E-08 4E-13 95.6 9.4 91 155-256 70-162 (166)
87 2d40_A Z3393, putative gentisa 98.8 2.3E-08 7.8E-13 104.3 12.3 91 156-257 249-339 (354)
88 4e2q_A Ureidoglycine aminohydr 98.8 2.1E-08 7.2E-13 100.5 11.6 79 177-261 184-263 (266)
89 2o8q_A Hypothetical protein; c 98.8 1.8E-08 6.1E-13 89.5 10.0 81 181-271 45-127 (134)
90 2gu9_A Tetracenomycin polyketi 98.8 4.7E-08 1.6E-12 83.1 12.1 79 371-476 18-98 (113)
91 3es1_A Cupin 2, conserved barr 98.8 1E-08 3.4E-13 96.6 8.2 78 178-260 78-155 (172)
92 2ozj_A Cupin 2, conserved barr 98.8 2.9E-08 1E-12 85.6 10.2 71 179-256 38-108 (114)
93 2ozi_A Hypothetical protein RP 98.8 1.4E-08 4.6E-13 86.9 7.7 77 177-256 15-93 (98)
94 1lr5_A Auxin binding protein 1 98.8 2.4E-08 8.1E-13 92.1 9.6 85 373-476 40-125 (163)
95 3h7j_A Bacilysin biosynthesis 98.8 2.3E-08 7.7E-13 98.6 10.0 76 179-259 145-221 (243)
96 2xlg_A SLL1785 protein, CUCA; 98.7 1E-08 3.5E-13 101.4 7.4 77 179-256 43-137 (239)
97 4axo_A EUTQ, ethanolamine util 98.7 6.1E-08 2.1E-12 89.4 12.0 76 178-262 65-140 (151)
98 2q30_A Uncharacterized protein 98.7 3.7E-08 1.3E-12 83.7 9.6 75 178-258 32-108 (110)
99 2xlg_A SLL1785 protein, CUCA; 98.7 2.1E-08 7.2E-13 99.2 8.7 93 371-473 40-136 (239)
100 3lag_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 86.9 6.0 78 372-473 15-92 (98)
101 1sef_A Conserved hypothetical 98.7 7.4E-08 2.5E-12 96.6 12.2 76 178-257 181-257 (274)
102 4h7l_A Uncharacterized protein 98.7 6.4E-08 2.2E-12 89.7 10.8 93 152-262 27-122 (157)
103 1rc6_A Hypothetical protein YL 98.7 4.1E-08 1.4E-12 97.6 10.3 78 179-261 179-257 (261)
104 2fqp_A Hypothetical protein BP 98.7 4.7E-08 1.6E-12 82.4 9.1 77 373-474 17-93 (97)
105 2pyt_A Ethanolamine utilizatio 98.7 4.7E-08 1.6E-12 88.1 9.3 73 178-259 56-128 (133)
106 2bnm_A Epoxidase; oxidoreducta 98.7 8E-07 2.8E-11 84.0 18.2 161 281-473 22-196 (198)
107 3ibm_A Cupin 2, conserved barr 98.7 1.2E-07 4.2E-12 88.4 12.3 78 372-477 54-132 (167)
108 3bu7_A Gentisate 1,2-dioxygena 98.7 6.4E-08 2.2E-12 102.1 11.3 77 177-257 292-368 (394)
109 2b8m_A Hypothetical protein MJ 98.7 1.5E-07 5E-12 81.5 11.3 76 373-476 26-102 (117)
110 4i4a_A Similar to unknown prot 98.6 2E-07 6.9E-12 81.7 11.9 75 372-474 32-106 (128)
111 4e2g_A Cupin 2 conserved barre 98.6 2E-07 6.8E-12 81.5 11.5 73 373-474 40-112 (126)
112 1o4t_A Putative oxalate decarb 98.6 3.4E-07 1.2E-11 81.7 13.1 74 373-473 56-129 (133)
113 3i7d_A Sugar phosphate isomera 98.6 1.6E-07 5.4E-12 87.2 10.8 99 349-477 21-122 (163)
114 3cew_A Uncharacterized cupin p 98.6 1.7E-07 5.9E-12 82.1 10.4 80 371-477 23-103 (125)
115 3kgz_A Cupin 2 conserved barre 98.6 2.6E-07 8.8E-12 85.4 11.8 78 372-477 42-119 (156)
116 3jzv_A Uncharacterized protein 98.6 2.2E-07 7.4E-12 86.8 11.3 77 372-476 51-127 (166)
117 3ht1_A REMF protein; cupin fol 98.6 2.7E-07 9.1E-12 82.4 10.9 79 373-477 38-116 (145)
118 1sfn_A Conserved hypothetical 98.6 3E-07 1E-11 90.9 12.2 79 177-261 163-242 (246)
119 1y9q_A Transcriptional regulat 98.6 5.9E-07 2E-11 84.7 13.5 152 281-474 23-177 (192)
120 1vj2_A Novel manganese-contain 98.6 2E-07 7E-12 82.2 9.6 77 372-476 46-122 (126)
121 2l37_A Ribosome-inactivating p 98.6 6.9E-08 2.3E-12 69.9 5.2 42 89-131 1-42 (43)
122 1y3t_A Hypothetical protein YX 98.6 5.2E-07 1.8E-11 92.0 13.8 71 183-259 221-293 (337)
123 2f4p_A Hypothetical protein TM 98.6 3E-07 1E-11 83.7 10.6 96 372-501 46-141 (147)
124 1sq4_A GLXB, glyoxylate-induce 98.6 1.9E-07 6.5E-12 94.1 10.2 79 177-261 189-268 (278)
125 3rns_A Cupin 2 conserved barre 98.5 2.5E-07 8.4E-12 90.3 10.4 72 178-256 152-224 (227)
126 3fjs_A Uncharacterized protein 98.5 4.1E-07 1.4E-11 79.1 10.5 71 372-470 34-104 (114)
127 2pfw_A Cupin 2, conserved barr 98.5 5.9E-07 2E-11 77.2 11.3 72 373-474 33-104 (116)
128 3d82_A Cupin 2, conserved barr 98.5 3.1E-07 1.1E-11 76.8 8.4 66 180-254 32-98 (102)
129 2i45_A Hypothetical protein; n 98.5 1.5E-07 5.1E-12 80.3 6.6 65 184-255 33-98 (107)
130 1vr3_A Acireductone dioxygenas 98.5 5.5E-07 1.9E-11 86.0 11.1 77 180-257 75-162 (191)
131 2ozi_A Hypothetical protein RP 98.5 1.8E-07 6.2E-12 79.9 7.0 79 372-474 15-93 (98)
132 3lwc_A Uncharacterized protein 98.5 6.4E-07 2.2E-11 79.0 10.6 71 372-472 38-108 (119)
133 4b29_A Dimethylsulfoniopropion 98.5 4.2E-07 1.5E-11 88.1 10.1 95 152-256 110-204 (217)
134 1o5u_A Novel thermotoga mariti 98.5 2.7E-07 9.1E-12 79.2 7.7 61 180-245 32-92 (101)
135 1yhf_A Hypothetical protein SP 98.5 7.6E-07 2.6E-11 76.4 10.5 74 373-476 39-112 (115)
136 2q30_A Uncharacterized protein 98.5 1.4E-06 4.9E-11 73.7 12.1 73 372-472 31-104 (110)
137 2o8q_A Hypothetical protein; c 98.5 6.3E-07 2.2E-11 79.4 9.7 72 375-473 44-115 (134)
138 1zrr_A E-2/E-2' protein; nicke 98.4 1.9E-07 6.5E-12 88.4 4.5 65 192-257 93-157 (179)
139 1vr3_A Acireductone dioxygenas 98.3 4.4E-06 1.5E-10 79.7 12.7 80 375-477 75-164 (191)
140 2qnk_A 3-hydroxyanthranilate 3 98.3 2.2E-05 7.4E-10 78.5 17.8 54 192-245 44-97 (286)
141 4h7l_A Uncharacterized protein 98.3 5.6E-06 1.9E-10 76.6 12.5 100 340-477 18-119 (157)
142 3bcw_A Uncharacterized protein 98.3 6.6E-07 2.3E-11 79.6 5.8 64 178-245 48-111 (123)
143 2vpv_A Protein MIF2, MIF2P; nu 98.3 3.3E-06 1.1E-10 78.9 10.5 74 373-473 87-161 (166)
144 3o14_A Anti-ecfsigma factor, C 98.3 4.2E-05 1.4E-09 74.7 18.5 158 180-463 44-202 (223)
145 2ozj_A Cupin 2, conserved barr 98.2 4.4E-06 1.5E-10 71.8 9.8 71 373-473 37-107 (114)
146 2i45_A Hypothetical protein; n 98.2 2.3E-06 7.9E-11 72.8 7.8 70 376-474 30-99 (107)
147 3d82_A Cupin 2, conserved barr 98.2 4.9E-06 1.7E-10 69.3 9.0 68 375-473 32-99 (102)
148 2opk_A Hypothetical protein; p 98.2 2.4E-05 8.1E-10 67.8 13.2 100 341-474 6-108 (112)
149 2pyt_A Ethanolamine utilizatio 98.2 5.8E-06 2E-10 74.3 9.3 69 373-473 56-124 (133)
150 3nw4_A Gentisate 1,2-dioxygena 98.2 6.9E-06 2.3E-10 85.9 11.2 72 178-256 278-349 (368)
151 1juh_A Quercetin 2,3-dioxygena 98.2 7.4E-06 2.5E-10 85.1 11.3 80 373-476 47-129 (350)
152 3es1_A Cupin 2, conserved barr 98.1 6.6E-06 2.3E-10 77.3 9.4 77 373-477 78-154 (172)
153 3st7_A Capsular polysaccharide 98.1 1.2E-05 4.2E-10 82.6 10.9 88 181-269 274-366 (369)
154 2arc_A ARAC, arabinose operon 98.1 1.7E-05 5.8E-10 71.5 9.9 61 193-257 32-92 (164)
155 4axo_A EUTQ, ethanolamine util 98.0 3.9E-05 1.3E-09 70.6 12.3 72 373-476 65-136 (151)
156 1yfu_A 3-hydroxyanthranilate-3 98.0 1.5E-05 5.2E-10 74.5 9.5 61 185-245 41-101 (174)
157 1zrr_A E-2/E-2' protein; nicke 98.0 3.2E-06 1.1E-10 80.0 4.7 69 385-477 91-159 (179)
158 2o1q_A Putative acetyl/propion 97.9 1.2E-05 4E-10 73.2 6.4 71 180-257 45-118 (145)
159 4b29_A Dimethylsulfoniopropion 97.9 5.7E-05 2E-09 73.2 10.4 94 349-472 109-202 (217)
160 1zvf_A 3-hydroxyanthranilate 3 97.8 7.6E-05 2.6E-09 69.7 9.5 60 186-245 41-104 (176)
161 1o5u_A Novel thermotoga mariti 97.8 3.2E-05 1.1E-09 66.1 6.5 67 376-471 33-99 (101)
162 2q1z_B Anti-sigma factor CHRR, 97.8 4.5E-05 1.6E-09 72.8 8.1 70 178-256 124-193 (195)
163 1yud_A Hypothetical protein SO 97.8 0.00034 1.1E-08 65.4 13.6 129 155-302 27-164 (170)
164 3cjx_A Protein of unknown func 97.7 7.1E-05 2.4E-09 69.8 7.9 73 179-256 43-116 (165)
165 3ebr_A Uncharacterized RMLC-li 97.7 0.00012 4E-09 67.9 8.8 71 179-256 42-114 (159)
166 3st7_A Capsular polysaccharide 97.7 0.00022 7.6E-09 73.1 11.8 77 374-473 272-352 (369)
167 3bcw_A Uncharacterized protein 97.7 8.1E-05 2.8E-09 66.0 7.4 65 373-465 48-112 (123)
168 3d0j_A Uncharacterized protein 97.7 0.00012 4E-09 66.2 8.1 79 178-260 24-111 (140)
169 3es4_A Uncharacterized protein 97.6 0.00025 8.4E-09 62.4 9.4 72 178-256 41-112 (116)
170 3ebr_A Uncharacterized RMLC-li 97.6 0.0005 1.7E-08 63.6 11.3 95 373-501 41-137 (159)
171 3eqe_A Putative cystein deoxyg 97.5 0.00087 3E-08 62.8 11.8 82 178-260 68-155 (171)
172 3myx_A Uncharacterized protein 97.4 0.00054 1.8E-08 67.5 9.8 64 178-245 166-229 (238)
173 2vec_A YHAK, pirin-like protei 97.4 0.041 1.4E-06 54.6 23.6 106 149-257 30-142 (256)
174 2y0o_A Probable D-lyxose ketol 97.3 0.0011 3.9E-08 62.2 10.1 78 179-261 53-156 (175)
175 1yfu_A 3-hydroxyanthranilate-3 97.2 0.0023 7.8E-08 59.8 11.6 59 382-464 43-101 (174)
176 2q1z_B Anti-sigma factor CHRR, 97.2 0.00089 3E-08 63.8 8.8 68 373-472 124-191 (195)
177 2y0o_A Probable D-lyxose ketol 97.1 0.0021 7.3E-08 60.3 10.1 94 374-477 53-155 (175)
178 2o1q_A Putative acetyl/propion 97.1 0.00049 1.7E-08 62.4 5.1 99 374-504 44-143 (145)
179 1tq5_A Protein YHHW; bicupin, 97.0 0.18 6E-06 49.6 23.7 104 151-257 9-119 (242)
180 2arc_A ARAC, arabinose operon 97.0 0.005 1.7E-07 55.0 11.6 57 388-472 32-89 (164)
181 2gm6_A Cysteine dioxygenase ty 97.0 0.0039 1.3E-07 60.0 11.2 80 178-257 78-166 (208)
182 3d0j_A Uncharacterized protein 97.0 0.0026 9.1E-08 57.3 8.7 71 383-474 38-108 (140)
183 3cjx_A Protein of unknown func 96.9 0.0038 1.3E-07 58.0 9.4 71 373-472 42-114 (165)
184 3ejk_A DTDP sugar isomerase; Y 96.8 0.015 5.2E-07 54.5 13.3 108 151-263 29-147 (174)
185 3ejk_A DTDP sugar isomerase; Y 96.8 0.025 8.6E-07 53.0 14.6 106 350-473 30-139 (174)
186 2qjv_A Uncharacterized IOLB-li 96.6 0.35 1.2E-05 48.2 21.7 86 155-253 11-106 (270)
187 3gbg_A TCP pilus virulence reg 96.6 0.0049 1.7E-07 60.5 8.1 58 185-244 13-72 (276)
188 3eqe_A Putative cystein deoxyg 96.5 0.034 1.2E-06 51.9 13.2 81 373-471 68-148 (171)
189 3bal_A Acetylacetone-cleaving 96.5 0.0044 1.5E-07 57.0 6.7 60 180-243 47-108 (153)
190 1zvf_A 3-hydroxyanthranilate 3 96.5 0.013 4.4E-07 54.7 9.7 61 383-463 43-103 (176)
191 1yud_A Hypothetical protein SO 96.4 0.052 1.8E-06 50.6 13.7 134 354-515 28-165 (170)
192 3eln_A Cysteine dioxygenase ty 96.2 0.031 1.1E-06 53.4 11.4 80 178-257 69-158 (200)
193 1qwr_A Mannose-6-phosphate iso 96.1 0.035 1.2E-06 56.8 11.9 59 374-462 251-309 (319)
194 2pa7_A DTDP-6-deoxy-3,4-keto-h 96.1 0.084 2.9E-06 47.7 13.1 99 151-256 11-112 (141)
195 2qnk_A 3-hydroxyanthranilate 3 96.1 0.018 6.1E-07 57.6 9.1 58 383-464 40-97 (286)
196 4gjz_A Lysine-specific demethy 96.1 0.013 4.5E-07 55.7 8.0 61 185-245 129-225 (235)
197 3es4_A Uncharacterized protein 96.0 0.038 1.3E-06 48.4 9.8 70 374-473 42-111 (116)
198 3uss_A Putative uncharacterize 95.9 0.015 5E-07 56.2 7.5 79 178-256 72-159 (211)
199 1pmi_A PMI, phosphomannose iso 95.9 0.44 1.5E-05 50.7 19.5 65 373-463 356-423 (440)
200 2pa7_A DTDP-6-deoxy-3,4-keto-h 95.9 0.15 5.1E-06 46.0 13.6 99 349-474 11-112 (141)
201 2gm6_A Cysteine dioxygenase ty 95.8 0.061 2.1E-06 51.7 11.4 82 373-471 78-162 (208)
202 3bal_A Acetylacetone-cleaving 95.8 0.024 8.4E-07 52.0 8.1 65 372-462 44-108 (153)
203 3o14_A Anti-ecfsigma factor, C 95.7 0.023 7.9E-07 55.2 8.1 58 373-462 42-99 (223)
204 1vrb_A Putative asparaginyl hy 95.4 0.057 1.9E-06 55.7 10.1 62 184-245 145-242 (342)
205 2wfp_A Mannose-6-phosphate iso 95.4 0.26 9E-06 51.7 15.3 59 373-461 323-381 (394)
206 4gjz_A Lysine-specific demethy 95.1 0.089 3E-06 49.9 9.8 87 377-464 126-225 (235)
207 3gbg_A TCP pilus virulence reg 95.1 0.056 1.9E-06 52.8 8.6 64 374-463 7-72 (276)
208 1vrb_A Putative asparaginyl hy 95.0 0.11 3.8E-06 53.5 10.7 93 379-474 145-252 (342)
209 1zx5_A Mannosephosphate isomer 94.9 0.2 6.9E-06 50.7 12.3 57 198-260 116-191 (300)
210 2xdv_A MYC-induced nuclear ant 94.8 0.16 5.5E-06 54.2 11.8 81 377-464 141-223 (442)
211 1wlt_A 176AA long hypothetical 94.8 0.25 8.4E-06 47.1 11.8 100 151-256 38-153 (196)
212 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 94.7 0.22 7.5E-06 47.5 11.1 106 151-262 27-148 (197)
213 1oi6_A PCZA361.16; epimerase, 94.7 0.27 9.1E-06 47.2 11.7 106 151-262 17-141 (205)
214 2p17_A Pirin-like protein; GK1 94.6 2.3 7.8E-05 42.4 18.8 67 186-256 46-115 (277)
215 3eln_A Cysteine dioxygenase ty 94.5 0.3 1E-05 46.6 11.7 88 373-477 69-158 (200)
216 3d8c_A Hypoxia-inducible facto 94.4 0.11 3.6E-06 53.7 8.9 91 379-470 187-291 (349)
217 3d8c_A Hypoxia-inducible facto 94.3 0.16 5.5E-06 52.3 10.1 61 185-245 188-285 (349)
218 3ryk_A DTDP-4-dehydrorhamnose 94.3 0.3 1E-05 46.8 11.2 107 151-263 41-165 (205)
219 2c0z_A NOVW; isomerase, epimer 94.3 0.42 1.4E-05 46.1 12.2 107 151-263 26-150 (216)
220 1upi_A DTDP-4-dehydrorhamnose 94.1 0.51 1.7E-05 45.8 12.4 107 151-263 37-161 (225)
221 3al5_A HTYW5, JMJC domain-cont 94.1 0.14 4.9E-06 52.5 8.9 59 187-245 175-264 (338)
222 2xdv_A MYC-induced nuclear ant 94.0 0.26 8.9E-06 52.5 11.1 60 186-245 146-223 (442)
223 1j1l_A Pirin; beta sandwich, c 94.0 5.6 0.00019 39.8 21.2 69 184-256 45-117 (290)
224 2ixk_A DTDP-4-dehydrorhamnose 94.0 0.39 1.3E-05 45.2 11.1 106 151-262 20-142 (184)
225 3al5_A HTYW5, JMJC domain-cont 93.9 0.3 1E-05 50.0 11.1 94 374-470 166-269 (338)
226 3kv4_A PHD finger protein 8; e 93.9 0.23 7.7E-06 53.1 10.3 62 184-245 235-325 (447)
227 4diq_A Lysine-specific demethy 93.9 0.2 7E-06 53.9 9.9 65 187-251 172-258 (489)
228 1dzr_A DTDP-4-dehydrorhamnose 93.8 0.58 2E-05 44.0 11.9 106 151-262 18-141 (183)
229 4diq_A Lysine-specific demethy 93.8 0.37 1.3E-05 51.9 11.8 95 377-476 166-264 (489)
230 1ep0_A DTDP-6-deoxy-D-XYLO-4-h 93.7 0.56 1.9E-05 44.2 11.5 106 151-262 20-141 (185)
231 1ep0_A DTDP-6-deoxy-D-XYLO-4-h 93.5 0.58 2E-05 44.1 11.3 74 382-473 56-134 (185)
232 3kv5_D JMJC domain-containing 93.5 0.21 7.1E-06 54.0 9.2 62 184-245 270-360 (488)
233 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 93.5 0.44 1.5E-05 45.4 10.5 72 382-473 68-141 (197)
234 2yu1_A JMJC domain-containing 93.4 0.28 9.5E-06 52.4 10.0 62 184-245 200-290 (451)
235 3k3o_A PHF8, PHD finger protei 93.4 0.19 6.4E-06 52.4 8.4 62 184-245 151-241 (371)
236 3pua_A GRC5, PHD finger protei 93.3 0.19 6.7E-06 52.6 8.4 62 184-245 178-268 (392)
237 2l2r_A Antimicrobial peptide e 93.2 0.026 8.9E-07 38.2 1.1 18 93-110 19-36 (37)
238 2ixk_A DTDP-4-dehydrorhamnose 93.2 0.57 1.9E-05 44.1 10.8 74 382-473 57-135 (184)
239 3ryk_A DTDP-4-dehydrorhamnose 93.1 0.62 2.1E-05 44.6 10.9 74 382-473 78-157 (205)
240 1xru_A 4-deoxy-L-threo-5-hexos 93.0 8 0.00027 38.6 20.9 46 194-243 73-119 (282)
241 1dzr_A DTDP-4-dehydrorhamnose 92.9 0.78 2.7E-05 43.1 11.2 74 382-473 55-134 (183)
242 4hn1_A Putative 3-epimerase in 92.9 1 3.5E-05 42.9 12.1 74 382-473 52-131 (201)
243 1wlt_A 176AA long hypothetical 92.9 0.68 2.3E-05 44.0 10.8 74 382-473 73-152 (196)
244 3k2o_A Bifunctional arginine d 92.9 0.37 1.3E-05 49.5 9.8 61 185-245 177-280 (336)
245 3kv9_A JMJC domain-containing 92.8 0.32 1.1E-05 51.1 9.2 63 183-245 178-269 (397)
246 1oi6_A PCZA361.16; epimerase, 92.7 1 3.5E-05 43.0 11.9 73 382-472 55-133 (205)
247 3loi_A Putative uncharacterize 92.2 2.3 8E-05 39.5 13.2 100 183-302 57-167 (172)
248 3k2o_A Bifunctional arginine d 92.1 0.54 1.9E-05 48.3 9.7 82 383-464 181-280 (336)
249 1upi_A DTDP-4-dehydrorhamnose 91.7 1.6 5.3E-05 42.4 12.0 73 382-472 74-152 (225)
250 2c0z_A NOVW; isomerase, epimer 91.5 1.2 4.2E-05 42.9 11.0 73 382-472 63-141 (216)
251 4hn1_A Putative 3-epimerase in 91.4 1.6 5.6E-05 41.5 11.5 106 151-262 15-138 (201)
252 3pur_A Lysine-specific demethy 91.3 0.45 1.6E-05 51.5 8.4 62 184-245 300-390 (528)
253 1e5r_A Proline oxidase; oxidor 90.9 0.25 8.7E-06 49.7 5.6 68 185-253 97-172 (290)
254 2yu1_A JMJC domain-containing 90.7 0.84 2.9E-05 48.7 9.7 87 382-470 204-295 (451)
255 3kv5_D JMJC domain-containing 90.4 0.65 2.2E-05 50.1 8.6 81 382-463 274-359 (488)
256 3m3i_A Putative uncharacterize 90.3 5.6 0.00019 38.4 14.0 105 183-303 64-210 (225)
257 1pmi_A PMI, phosphomannose iso 89.9 1.1 3.7E-05 47.7 9.7 64 178-244 356-423 (440)
258 3rcq_A Aspartyl/asparaginyl be 89.4 1.5 5E-05 41.7 9.3 75 180-262 103-184 (197)
259 1xe7_A YML079WP, hypothetical 89.4 4.2 0.00014 38.8 12.4 102 183-302 83-197 (203)
260 3kv4_A PHD finger protein 8; e 89.3 1.1 3.9E-05 47.7 9.3 82 382-464 239-325 (447)
261 1eyb_A Homogentisate 1,2-dioxy 88.9 1.2 4.2E-05 47.3 9.1 86 355-472 140-226 (471)
262 1eyb_A Homogentisate 1,2-dioxy 88.7 1.2 4E-05 47.5 8.8 45 197-245 176-220 (471)
263 3kv9_A JMJC domain-containing 88.6 1.1 3.8E-05 47.0 8.5 85 378-463 178-268 (397)
264 2cmy_B Beta trypsin, veronica 88.6 0.13 4.5E-06 33.7 0.9 31 26-58 2-32 (34)
265 2wfp_A Mannose-6-phosphate iso 88.5 0.98 3.4E-05 47.4 8.1 59 178-242 323-381 (394)
266 3k3o_A PHF8, PHD finger protei 88.5 0.61 2.1E-05 48.6 6.3 81 382-463 155-240 (371)
267 2qjv_A Uncharacterized IOLB-li 88.4 1.3 4.5E-05 44.1 8.5 78 177-257 151-246 (270)
268 2qdr_A Uncharacterized protein 87.9 0.94 3.2E-05 44.8 6.8 81 156-255 77-159 (303)
269 3pua_A GRC5, PHD finger protei 87.8 0.76 2.6E-05 48.2 6.6 81 382-463 182-267 (392)
270 3uss_A Putative uncharacterize 87.6 5.2 0.00018 38.3 11.9 86 373-477 72-160 (211)
271 2oyz_A UPF0345 protein VPA0057 87.1 2.5 8.6E-05 35.4 8.1 65 184-256 28-93 (94)
272 1qwr_A Mannose-6-phosphate iso 86.9 1.3 4.5E-05 45.0 7.6 58 179-242 251-308 (319)
273 1znp_A Hypothetical protein AT 86.8 6.8 0.00023 35.7 11.5 107 155-271 20-136 (154)
274 3loi_A Putative uncharacterize 86.6 17 0.00059 33.6 14.4 113 374-516 53-169 (172)
275 2rg4_A Uncharacterized protein 86.5 2.2 7.5E-05 40.8 8.6 96 377-477 106-207 (216)
276 3hqx_A UPF0345 protein aciad03 84.4 8.5 0.00029 33.1 10.2 69 183-256 41-109 (111)
277 3pur_A Lysine-specific demethy 84.3 1.9 6.5E-05 46.7 7.6 78 382-463 304-389 (528)
278 2lqx_A Trypsin inhibitor BWI-2 84.6 0.2 6.8E-06 34.1 0.0 38 90-128 3-40 (41)
279 3bb6_A Uncharacterized protein 83.6 4.9 0.00017 35.5 8.7 74 383-476 23-101 (127)
280 1e5r_A Proline oxidase; oxidor 83.2 2.3 7.9E-05 42.7 7.3 85 374-475 91-175 (290)
281 3rcq_A Aspartyl/asparaginyl be 82.4 8.9 0.00031 36.3 10.7 79 375-476 103-182 (197)
282 3kmh_A D-lyxose isomerase; cup 82.1 6.5 0.00022 38.3 9.7 84 178-262 105-212 (246)
283 1zx5_A Mannosephosphate isomer 81.3 2.6 9E-05 42.4 7.0 56 179-242 230-286 (300)
284 3bb6_A Uncharacterized protein 81.0 8.2 0.00028 34.0 9.1 59 187-245 22-89 (127)
285 1znp_A Hypothetical protein AT 81.0 22 0.00077 32.3 12.3 98 354-472 21-121 (154)
286 3m3i_A Putative uncharacterize 80.7 23 0.00077 34.2 12.8 153 354-516 35-211 (225)
287 2vec_A YHAK, pirin-like protei 80.6 7.4 0.00025 38.3 9.8 70 378-473 68-140 (256)
288 3eo6_A Protein of unknown func 79.8 8.7 0.0003 32.8 8.6 53 197-254 52-104 (106)
289 1xe7_A YML079WP, hypothetical 79.1 36 0.0012 32.3 13.6 70 374-462 79-151 (203)
290 2plx_B Peptide inhibitor; heli 76.5 1.2 4E-05 27.6 1.6 26 32-57 1-26 (26)
291 2l2r_A Antimicrobial peptide e 75.5 2.2 7.4E-05 29.0 2.8 27 31-57 5-31 (37)
292 2lqx_A Trypsin inhibitor BWI-2 76.0 0.67 2.3E-05 31.5 0.0 32 29-61 7-38 (41)
293 1tq5_A Protein YHHW; bicupin, 73.6 12 0.00041 36.4 9.0 69 378-472 45-116 (242)
294 3dl3_A Tellurite resistance pr 73.1 18 0.0006 31.6 8.9 58 188-245 25-88 (119)
295 2oyz_A UPF0345 protein VPA0057 73.0 20 0.0007 29.9 8.9 71 373-473 22-92 (94)
296 2pqq_A Putative transcriptiona 71.8 6.3 0.00022 33.3 5.9 51 182-232 29-81 (149)
297 3mdp_A Cyclic nucleotide-bindi 70.4 5.2 0.00018 33.6 5.0 52 181-232 29-85 (142)
298 3dn7_A Cyclic nucleotide bindi 70.0 8.9 0.0003 34.3 6.7 50 183-232 32-83 (194)
299 2oz6_A Virulence factor regula 67.7 10 0.00036 34.1 6.7 51 183-233 15-67 (207)
300 2p17_A Pirin-like protein; GK1 67.5 28 0.00095 34.4 10.2 83 155-244 142-232 (277)
301 1o5l_A Transcriptional regulat 66.9 9.2 0.00032 35.1 6.3 51 181-231 22-74 (213)
302 4ev0_A Transcription regulator 66.9 11 0.00036 34.3 6.7 51 182-232 23-75 (216)
303 1ywk_A 4-deoxy-L-threo-5-hexos 66.6 20 0.00068 35.9 8.9 55 185-243 63-119 (289)
304 3fx3_A Cyclic nucleotide-bindi 66.5 11 0.00037 35.0 6.7 51 182-232 35-87 (237)
305 3gyd_A CNMP-BD protein, cyclic 66.5 13 0.00045 33.5 7.2 51 181-231 62-114 (187)
306 3hqx_A UPF0345 protein aciad03 66.4 51 0.0017 28.3 10.1 71 375-473 38-108 (111)
307 3b02_A Transcriptional regulat 66.1 10 0.00034 34.2 6.2 49 185-233 3-53 (195)
308 2z69_A DNR protein; beta barre 65.7 6.3 0.00022 33.6 4.6 51 181-231 35-87 (154)
309 3eo6_A Protein of unknown func 64.5 30 0.001 29.5 8.3 68 375-472 37-104 (106)
310 3ryp_A Catabolite gene activat 64.4 13 0.00045 33.5 6.7 51 183-233 21-73 (210)
311 3iwz_A CAP-like, catabolite ac 63.1 14 0.00047 33.9 6.7 52 182-233 35-88 (230)
312 1pcq_O Groes protein; chaperon 63.0 16 0.00054 30.7 6.3 30 440-469 55-84 (97)
313 3d0s_A Transcriptional regulat 62.7 14 0.00049 33.8 6.8 50 183-232 31-82 (227)
314 1ft9_A Carbon monoxide oxidati 62.0 35 0.0012 31.1 9.3 69 181-255 23-93 (222)
315 2ptm_A Hyperpolarization-activ 61.4 13 0.00044 33.7 6.0 49 181-231 94-142 (198)
316 3dv8_A Transcriptional regulat 61.2 16 0.00054 33.2 6.7 50 182-231 27-78 (220)
317 3idb_B CAMP-dependent protein 61.0 16 0.00056 31.6 6.5 48 183-231 63-112 (161)
318 2xxz_A Lysine-specific demethy 60.8 5.1 0.00017 41.0 3.4 24 223-246 281-304 (332)
319 2fmy_A COOA, carbon monoxide o 60.7 38 0.0013 30.8 9.3 69 181-255 27-97 (220)
320 2zcw_A TTHA1359, transcription 60.4 13 0.00043 33.7 5.8 50 184-233 8-61 (202)
321 2rg4_A Uncharacterized protein 59.8 18 0.00063 34.3 7.0 60 185-244 109-192 (216)
322 2gau_A Transcriptional regulat 59.5 11 0.00038 34.7 5.4 52 181-232 33-86 (232)
323 3ocp_A PRKG1 protein; serine/t 59.1 16 0.00056 30.6 6.0 46 183-231 48-93 (139)
324 2qdr_A Uncharacterized protein 59.0 29 0.00098 34.4 8.1 70 372-473 89-159 (303)
325 3la7_A Global nitrogen regulat 59.0 17 0.00058 34.0 6.7 50 183-232 45-96 (243)
326 3e6c_C CPRK, cyclic nucleotide 58.8 16 0.00056 34.2 6.5 52 181-232 32-85 (250)
327 3pna_A CAMP-dependent protein 58.4 19 0.00064 31.0 6.4 48 181-231 61-108 (154)
328 2ypd_A Probable JMJC domain-co 57.9 12 0.00041 39.0 5.6 25 221-245 293-317 (392)
329 3e97_A Transcriptional regulat 57.5 13 0.00045 34.2 5.5 52 181-232 29-82 (231)
330 3kcc_A Catabolite gene activat 57.0 19 0.00066 34.1 6.8 51 183-233 71-123 (260)
331 3kmh_A D-lyxose isomerase; cup 56.4 1E+02 0.0034 30.0 11.4 97 373-476 105-209 (246)
332 1zyb_A Transcription regulator 56.3 15 0.00053 34.0 5.8 52 181-232 43-96 (232)
333 4f8a_A Potassium voltage-gated 55.9 22 0.00075 30.3 6.4 47 183-232 52-98 (160)
334 1j1l_A Pirin; beta sandwich, c 55.2 49 0.0017 32.9 9.5 93 155-253 144-239 (290)
335 2pqq_A Putative transcriptiona 54.1 29 0.00099 29.0 6.7 75 376-474 28-107 (149)
336 3bpz_A Potassium/sodium hyperp 53.6 19 0.00066 32.6 5.9 48 181-231 95-142 (202)
337 3avr_A Lysine-specific demethy 50.3 9.1 0.00031 41.5 3.4 24 223-246 340-363 (531)
338 2qcs_B CAMP-dependent protein 49.9 34 0.0012 32.5 7.3 50 182-231 181-233 (291)
339 2bgc_A PRFA; bacterial infecti 49.6 23 0.00079 32.9 5.8 50 184-234 21-72 (238)
340 3e6c_C CPRK, cyclic nucleotide 48.6 62 0.0021 30.0 8.8 117 376-517 32-200 (250)
341 3fx3_A Cyclic nucleotide-bindi 48.0 46 0.0016 30.5 7.7 75 376-474 34-113 (237)
342 4ask_A Lysine-specific demethy 47.9 11 0.00036 40.7 3.4 24 223-246 315-338 (510)
343 2oz6_A Virulence factor regula 47.9 43 0.0015 29.9 7.2 75 376-474 13-96 (207)
344 3mdp_A Cyclic nucleotide-bindi 47.9 32 0.0011 28.5 6.0 55 376-452 29-86 (142)
345 1vp6_A CNBD, cyclic-nucleotide 47.6 14 0.00047 30.9 3.5 45 182-231 35-79 (138)
346 4ev0_A Transcription regulator 47.5 48 0.0016 29.8 7.5 118 376-517 22-186 (216)
347 3dv8_A Transcriptional regulat 47.2 69 0.0023 28.8 8.6 118 376-517 26-192 (220)
348 2d93_A RAP guanine nucleotide 46.9 14 0.00048 30.9 3.5 47 182-231 40-87 (134)
349 3dn7_A Cyclic nucleotide bindi 46.5 51 0.0017 29.2 7.4 74 377-474 31-110 (194)
350 1wgp_A Probable cyclic nucleot 45.1 12 0.00042 31.2 2.8 49 182-231 30-82 (137)
351 1ft9_A Carbon monoxide oxidati 44.8 75 0.0026 28.8 8.5 115 376-517 23-186 (222)
352 3dkw_A DNR protein; CRP-FNR, H 44.6 12 0.00039 34.4 2.8 53 181-233 32-86 (227)
353 3e97_A Transcriptional regulat 44.5 48 0.0016 30.2 7.1 75 376-474 29-108 (231)
354 3ryp_A Catabolite gene activat 43.9 54 0.0019 29.2 7.3 75 376-474 19-99 (210)
355 3la7_A Global nitrogen regulat 43.8 57 0.002 30.3 7.6 77 374-474 41-124 (243)
356 2z69_A DNR protein; beta barre 43.8 27 0.00094 29.4 4.9 53 376-450 35-87 (154)
357 2fmy_A COOA, carbon monoxide o 43.6 77 0.0026 28.6 8.4 115 376-517 27-190 (220)
358 3gyd_A CNMP-BD protein, cyclic 43.2 53 0.0018 29.3 7.1 54 376-451 62-115 (187)
359 3d0s_A Transcriptional regulat 42.7 69 0.0024 29.1 7.9 74 377-474 30-108 (227)
360 3ukn_A Novel protein similar t 42.0 34 0.0012 31.1 5.6 49 181-232 98-146 (212)
361 3iwz_A CAP-like, catabolite ac 41.8 60 0.0021 29.4 7.3 75 376-474 34-114 (230)
362 2e63_A KIAA1787 protein; struc 41.5 29 0.00098 31.9 4.9 69 177-245 65-141 (170)
363 3b02_A Transcriptional regulat 40.6 62 0.0021 28.8 7.1 114 380-517 3-162 (195)
364 1o5l_A Transcriptional regulat 40.6 52 0.0018 29.8 6.7 126 375-524 21-194 (213)
365 1xru_A 4-deoxy-L-threo-5-hexos 39.6 1.2E+02 0.004 30.2 9.2 72 181-256 182-262 (282)
366 2qcs_B CAMP-dependent protein 39.0 48 0.0016 31.5 6.4 47 182-231 63-109 (291)
367 1zyb_A Transcription regulator 38.9 50 0.0017 30.4 6.3 118 376-517 43-209 (232)
368 2gau_A Transcriptional regulat 38.9 46 0.0016 30.4 6.0 118 376-517 33-203 (232)
369 2zcw_A TTHA1359, transcription 37.1 69 0.0024 28.6 6.8 115 378-517 7-169 (202)
370 4ava_A Lysine acetyltransferas 36.6 56 0.0019 31.9 6.5 50 182-231 37-87 (333)
371 1ywk_A 4-deoxy-L-threo-5-hexos 36.2 70 0.0024 31.9 7.0 62 181-243 182-252 (289)
372 1o7f_A CAMP-dependent RAP1 gua 36.1 44 0.0015 34.4 5.9 51 183-233 67-121 (469)
373 3of1_A CAMP-dependent protein 35.9 40 0.0014 30.8 5.1 46 183-231 32-77 (246)
374 3kcc_A Catabolite gene activat 35.3 80 0.0027 29.7 7.2 75 376-474 69-149 (260)
375 3of1_A CAMP-dependent protein 34.0 43 0.0015 30.7 4.9 48 182-231 149-196 (246)
376 3idb_B CAMP-dependent protein 33.5 82 0.0028 26.9 6.5 53 376-451 61-113 (161)
377 1we3_O CPN10(groes); chaperoni 31.9 80 0.0027 26.5 5.7 25 439-463 59-83 (100)
378 2ypd_A Probable JMJC domain-co 31.7 46 0.0016 34.6 5.0 25 440-464 293-317 (392)
379 2bgc_A PRFA; bacterial infecti 31.6 1E+02 0.0034 28.4 7.1 75 376-474 18-99 (238)
380 2rqx_A PMRD, polymyxin B resis 31.2 42 0.0014 27.3 3.6 55 198-254 13-67 (89)
381 3dl3_A Tellurite resistance pr 28.4 2.2E+02 0.0077 24.5 8.1 71 384-476 26-99 (119)
382 1uhe_A Aspartate 1-decarboxyla 28.3 7.4 0.00025 32.7 -1.3 35 199-234 28-62 (97)
383 3shr_A CGMP-dependent protein 27.8 76 0.0026 30.3 5.7 45 184-231 65-109 (299)
384 3shr_A CGMP-dependent protein 27.4 65 0.0022 30.8 5.1 50 182-231 181-233 (299)
385 1pcq_O Groes protein; chaperon 24.0 1.3E+02 0.0045 25.0 5.6 48 187-236 21-70 (97)
386 4din_B CAMP-dependent protein 23.9 74 0.0025 32.2 5.0 48 184-231 274-324 (381)
387 3esg_A HUTD, putative uncharac 22.8 4.6E+02 0.016 24.3 10.8 93 154-256 25-119 (193)
388 3tnp_B CAMP-dependent protein 20.4 1.3E+02 0.0044 30.9 6.0 50 182-231 291-348 (416)
389 3tnp_B CAMP-dependent protein 20.3 1.5E+02 0.005 30.5 6.4 48 183-231 170-219 (416)
390 3dkw_A DNR protein; CRP-FNR, H 20.3 50 0.0017 29.9 2.6 118 376-517 32-201 (227)
391 3nx6_A 10KDA chaperonin; bacte 20.3 1.8E+02 0.006 24.1 5.6 25 439-463 54-78 (95)
No 1
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=100.00 E-value=6.7e-82 Score=671.38 Aligned_cols=379 Identities=34% Similarity=0.596 Sum_probs=336.0
Q ss_pred cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805 145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN 224 (540)
Q Consensus 145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~ 224 (540)
++++|+++|+|++|+|++|++||+++++|+||.+|+++.++|+|||+++|||++|++|+||++|+|++|+|++++..+++
T Consensus 10 ~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~ 89 (418)
T 3s7i_A 10 PSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFN 89 (418)
T ss_dssp CGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEE
T ss_pred ccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805 225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF 304 (540)
Q Consensus 225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~ 304 (540)
|++||||+||+|++||++|+|+++.|+|+++.+++++||.+..|||||+.++.+||++||++||++||+|+.+++++|+.
T Consensus 90 l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~~~v~kl~~ 169 (418)
T 3s7i_A 90 LDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLL 169 (418)
T ss_dssp EETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred ecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCHHHHHhhhc
Confidence 99999999999999999999877899999999999999999999999999889999999999999999999999999994
Q ss_pred c---------------------CCCCcEEEccchhhhccCCCCCCCCcCCCC----CCCCceeEcCCCCCcccCCCceEE
Q 040805 305 Q---------------------QDQGAMVKASKQQIRALSRSQEGPSIWPFA----GESRGTFNLFGKRPSHSNNFGELF 359 (540)
Q Consensus 305 ~---------------------q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~----~~~~~~fnL~~~~P~~~n~~G~~~ 359 (540)
. +..|.||++++++++.|+++.. +.++.+ ...+++|||.+++|+|+|.+|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~nl~~~~p~~~n~~G~~~ 247 (418)
T 3s7i_A 170 EENAGGEQEERGQRRWSTRSSENNEGVIVKVSKEHVEELTKHAK--SVSKKGSEEEGDITNPINLREGEPDLSNNFGKLF 247 (418)
T ss_dssp SCC--------------------CCCSEEECCHHHHHHHHTTCB--C--------CTTCCCCEETTCSCCSEEETTEEEE
T ss_pred ccccccccccccccccccccccccCCceEEcChhhhhhcccccc--ccCCCCcCcccCCCcccccccCCCceeCCCCeEE
Confidence 4 3469999999999998987632 211111 124789999999999999999999
Q ss_pred EecCCCC-CCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccC---CCccccCCc
Q 040805 360 EADSNDF-RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG---SSTREEGSA 435 (540)
Q Consensus 360 ~~~~~~~-p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~---~~~~~~~~~ 435 (540)
.+++.+| |+|+++||++++++|.||||++|||||||++|+||++|+|+++||+|++..+++++++++ ++++++...
T Consensus 248 ~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (418)
T 3s7i_A 248 EVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNR 327 (418)
T ss_dssp EECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCE
T ss_pred EechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccc
Confidence 9999999 999999999999999999999999999999999999999999999998864322221111 111222345
Q ss_pred cceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcccccccc-ccccccCCHHHHHHHcCCCHHHHHHh
Q 040805 436 TYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR-NKIFKVMESEAKELAFNTRADEVERV 514 (540)
Q Consensus 436 ~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~-~svl~~~~~evla~AF~vs~e~v~kl 514 (540)
.|++++.+|++|||||||+||+||++|++ +|+|++|++++++|.+++|||+ +|||++||++||++||+++.++|++|
T Consensus 328 ~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv~~~~~~evla~af~v~~~~v~~L 405 (418)
T 3s7i_A 328 EVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKL 405 (418)
T ss_dssp EEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBHHHHSCHHHHHHHSSSCHHHHHHH
T ss_pred cceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhhhhcCCHHHHHHHhCCCHHHHHHH
Confidence 67899999999999999999999999874 5999999999989999999998 59999999999999999999999999
Q ss_pred hcCCCCceEEcCC
Q 040805 515 FGNQDQDWFFKGP 527 (540)
Q Consensus 515 ~~~q~e~~f~~~~ 527 (540)
+.+|++++|+++.
T Consensus 406 ~~~q~e~~~~~~~ 418 (418)
T 3s7i_A 406 IKNQKESHFVSAR 418 (418)
T ss_dssp HHTCCSCSEEECC
T ss_pred HhcCCcceeecCC
Confidence 9999999999863
No 2
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=100.00 E-value=1.6e-78 Score=651.09 Aligned_cols=371 Identities=29% Similarity=0.530 Sum_probs=321.2
Q ss_pred cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805 145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN 224 (540)
Q Consensus 145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~ 224 (540)
+..+|++++++++|+++.|++|+.+++.|+++.+++++.++|+||++.+|||++++||+||++|++++++|++++.++++
T Consensus 52 ~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~ 131 (445)
T 2cav_A 52 RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK 131 (445)
T ss_dssp CGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEE
T ss_pred chhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEE
Confidence 44557779999999999999999988999988889999999999999999999999999999999999999999889999
Q ss_pred eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805 225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF 304 (540)
Q Consensus 225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~ 304 (540)
|++||||+||+|++||++|+|++++|++|++++++++|+.+.+|+|+|+.++.+||++||++||++||+++.+++++|++
T Consensus 132 l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~ 211 (445)
T 2cav_A 132 LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLL 211 (445)
T ss_dssp EETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred ecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhc
Confidence 99999999999999999999856799999999999999999999999999888999999999999999999999999995
Q ss_pred c-CCCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcC
Q 040805 305 Q-QDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK 383 (540)
Q Consensus 305 ~-q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~p 383 (540)
. +++|+||++++++++++.++.. .+.+....+...+|||++++|+|+|.+|+++.+++.+||+|+++||++++++|.|
T Consensus 212 ~~~~~g~Iv~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~p 290 (445)
T 2cav_A 212 QEEQEGVIVKMPKDQIQEISKHAQ-SSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNE 290 (445)
T ss_dssp SCCSSSSEEECCCC---------------------CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECT
T ss_pred ccCCCCcEEEeCCcchhhhccccc-ccCCCCCCCcccceeccccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeC
Confidence 4 4579999999888777765421 1111222345679999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 384 ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
|||++|||||||++|+||++|+++++||++++..+ +++.+..|++++.+|++|||||||+||+|+++|+
T Consensus 291 g~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~-----------~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~ 359 (445)
T 2cav_A 291 GALFVPHYNSRATVILVANEGRAEVELVGLEQQQQ-----------QGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA 359 (445)
T ss_dssp TEEEEEEEESSCEEEEEEEESCEEEEEEEC----------------------CCEEEEEEECTTCEEEECTTCCEEEEES
T ss_pred CceeeeEECCCCcEEEEEEeeEEEEEEEeCCCccc-----------ccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC
Confidence 99999999999999999999999999999987421 1122345678999999999999999999999998
Q ss_pred CCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCCc
Q 040805 464 QNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR 529 (540)
Q Consensus 464 ~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~~ 529 (540)
+++.|++|.+++++|.+++||| .++||+++|++||++||+++.++|++|+.+|++++|+++|++
T Consensus 360 --~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~~~ 424 (445)
T 2cav_A 360 --SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQPR 424 (445)
T ss_dssp --SSEEEEEEEESCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHHHHCCSCSEEECC--
T ss_pred --CCeEEEEEEccCCCCCcEEcccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCchh
Confidence 4799999999998899999999 899999999999999999999999999999999999999874
No 3
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=100.00 E-value=2.8e-76 Score=632.23 Aligned_cols=373 Identities=29% Similarity=0.534 Sum_probs=336.4
Q ss_pred cCCc-ccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE
Q 040805 145 EGDE-ESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY 223 (540)
Q Consensus 145 ~~~~-f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~ 223 (540)
+..+ |++++++++|+|+++..|+.+++.|+++.+++++.++|+||++++|||+++++|+||++|+|++++|++++.+++
T Consensus 26 ~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~ 105 (434)
T 2ea7_A 26 NSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSY 105 (434)
T ss_dssp CTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEE
T ss_pred eccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEE
Confidence 6666 999999999999999999998899999888999999999999999999999999999999999999999889999
Q ss_pred eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHh
Q 040805 224 NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL 303 (540)
Q Consensus 224 ~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~ 303 (540)
+|++||||+||+|++||++|+|++++|++|++++++++|+.+.+|+|+|+.++.+||++||++||++||+|+.+++++|+
T Consensus 106 ~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~ 185 (434)
T 2ea7_A 106 ILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVL 185 (434)
T ss_dssp EEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred EeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhcCCHHHHHHHhCCCHHHHHhhh
Confidence 99999999999999999999986679999999999999999999999999888899999999999999999999999999
Q ss_pred -ccC----------CCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccc
Q 040805 304 -FQQ----------DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDL 372 (540)
Q Consensus 304 -~~q----------~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l 372 (540)
+.+ .+|+||++++++++.++++... +.+....+...+|||++++|+|++.+|+++++++.+||+|+++
T Consensus 186 ~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~~p~~~~~gG~v~~~~~~~~P~L~~l 264 (434)
T 2ea7_A 186 FGEERQQQQGEESREEGVIVELKREQIQELMKHAKS-SSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDL 264 (434)
T ss_dssp TCC---------CCCSSSEEECCHHHHHHHHTTSBC-CCSSCTTCSSSCEETTSSCCSEEETTEEEEEECTTTCHHHHHH
T ss_pred hcccccccccccccccceEEECCcccChhhcccccc-cCCCCCCCcccceeeccCCCceeCCCcEEEEEChhhCcccccc
Confidence 653 4699999998888777654211 1122333556799999999999999999999999999999999
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+|++++++|.||||++|||||+|++|+||++|+|+++||++++..+ +++++.+..|++++.+|++||||||
T Consensus 265 ~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~---------~~~~~~~~~~r~~~~~l~~Gdv~vv 335 (434)
T 2ea7_A 265 DVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQ---------QKQQEESLEVQRYRAELSEDDVFVI 335 (434)
T ss_dssp TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCC---------CTTSCCCEEEEEEEEEECTTCEEEE
T ss_pred CcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCcccc---------ccccccCcceEEEEEEecCCcEEEE
Confidence 9999999999999999999999999999999999999999976421 0112223446789999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCCc
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR 529 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~~ 529 (540)
|+|++|+++|+ +++.|++|.++++++.+++||| .++||+++|++||++||+++.++|++|+.+|++++|++++++
T Consensus 336 P~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~~~ 411 (434)
T 2ea7_A 336 PAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQSESHFVDAQPE 411 (434)
T ss_dssp CTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGGGSCHHHHHHHSSSCHHHHHHHHTTCCSCSEEECCCC
T ss_pred CCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEECCCch
Confidence 99999999998 4799999999998899999999 799999999999999999999999999999999999998763
No 4
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=100.00 E-value=1.8e-75 Score=623.48 Aligned_cols=373 Identities=33% Similarity=0.593 Sum_probs=331.0
Q ss_pred CCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEee
Q 040805 146 GDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNV 225 (540)
Q Consensus 146 ~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l 225 (540)
+++|++++++++|+|+++..|+.+++.|+++.+++++.++|+||++++|||+++++|+||++|++++++|++++.++++|
T Consensus 16 ~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l 95 (416)
T 1uij_A 16 SNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNL 95 (416)
T ss_dssp GGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEE
T ss_pred cccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEe
Confidence 77899999999999999998888889999888889999999999999999999999999999999999999988899999
Q ss_pred CCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHh-c
Q 040805 226 KRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL-F 304 (540)
Q Consensus 226 ~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~-~ 304 (540)
++||||+||+|++||++|+|++++|++|++++++++|+.+.+|+|+|+.++.+||++||++||++||+++.+++++|+ +
T Consensus 96 ~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~ 175 (416)
T 1uij_A 96 HPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG 175 (416)
T ss_dssp CTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhhc
Confidence 999999999999999999964679999999999999999999999999988899999999999999999999999999 6
Q ss_pred cC-----CCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEE
Q 040805 305 QQ-----DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYA 379 (540)
Q Consensus 305 ~q-----~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~ 379 (540)
.+ .+|+||++++++++.++.+... +.+....+...+|||++++|+|+|.+|+++++++.+||+|++++|+++++
T Consensus 176 ~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~ 254 (416)
T 1uij_A 176 EEEEQRQQEGVIVELSKEQIRQLSRRAKS-SSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSV 254 (416)
T ss_dssp TTCGGGSBSSSEEECCHHHHHHHTSSCBC-CCGGGGGCSSSCEETTSSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEE
T ss_pred cccccccCcceEEEeCCcccchhhhcccc-cCCCCCCCcccceeccccCCCccCCCceEEEEChHHCccchhcCcceEEE
Confidence 66 3699999998888877654211 11122234567999999999999999999999999999999999999999
Q ss_pred EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEE
Q 040805 380 NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVV 459 (540)
Q Consensus 380 ~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~ 459 (540)
+|.||||++|||||+|++|+||++|+|+++||++++..++ +++++....|++++.+|++|||||||+|++||
T Consensus 255 ~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~--------~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~ 326 (416)
T 1uij_A 255 DINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQK--------QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFV 326 (416)
T ss_dssp EECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC--------------------CCEEEEEEEEETTCEEEECTTCCEE
T ss_pred EEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCcccc--------ccccccccceEEEEEEecCCcEEEECCCCeEE
Confidence 9999999999999999999999999999999999874211 11223345567999999999999999999999
Q ss_pred EEecCCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCCc
Q 040805 460 TVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR 529 (540)
Q Consensus 460 ~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~~ 529 (540)
++|+ ++|.|++|.++++++.+++||| .++||+++|++||++||+++.++|++|+.+|++++|+++++.
T Consensus 327 ~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~~~~~~v~~l~~~~~~~~~~~~~~~ 395 (416)
T 1uij_A 327 VNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDAQPQ 395 (416)
T ss_dssp EEES--SSEEEEEEEETCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHTTSCCSCSEEEC---
T ss_pred EEcC--CCeEEEEEEcCCCCCcceecccchhhHHHhCCHHHHHHHHCcCHHHHHHHHhcCCccEEECCccc
Confidence 9998 5899999999998999999999 799999999999999999999999999999999999999874
No 5
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=100.00 E-value=7e-74 Score=613.93 Aligned_cols=349 Identities=20% Similarity=0.350 Sum_probs=303.3
Q ss_pred ccceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE---
Q 040805 149 ESSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY--- 223 (540)
Q Consensus 149 f~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~--- 223 (540)
-.++|++++|.|++| |.+++.|+ |++.+|+ +|+|||+++||||+|++|+||++|+|++|+|.|+|.++|
T Consensus 24 P~~~i~se~G~~e~~---d~~~~~l~~~gvs~~R~---~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~ 97 (465)
T 3qac_A 24 PTNRIQAERGLTEVW---DSNEQEFRCAGVSVIRR---TIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESG 97 (465)
T ss_dssp CCEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC---
T ss_pred CccceeCCCcEEEEE---CCCChhhcccceEEEEE---EEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecc
Confidence 347899999999997 66678888 8888888 999999999999999999999999999999999987655
Q ss_pred -----------------------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC-----C
Q 040805 224 -----------------------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP-----G 263 (540)
Q Consensus 224 -----------------------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p-----g 263 (540)
+|++||||+||+|++||++|+| +++|++|++++++|.+ +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G-~~~lv~v~~~d~~n~~nqld~~ 176 (465)
T 3qac_A 98 SQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNG-DQPLVAVILIDTANHANQLDKN 176 (465)
T ss_dssp ---------------------------CCCCCCEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEECTTSTTCCSCSS
T ss_pred hhccccccccccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCC-CCCEEEEEEEcCCCcccccccc
Confidence 8999999999999999999998 6799999999998875 6
Q ss_pred cccccccCCCCCc-------------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccC
Q 040805 264 QYEAFYGAGGENP-------------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALS 323 (540)
Q Consensus 264 ~~~~f~LaG~~~~-------------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~ 323 (540)
.++.|||||++++ .|||+||++++|++||||+.+++++|+++++ .|.||+++ ++|+.++
T Consensus 177 ~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~-~~l~~~~ 255 (465)
T 3qac_A 177 FPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQ-EGLHVIK 255 (465)
T ss_dssp SCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC--CCCC---
T ss_pred cceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEec-CcccccC
Confidence 8899999999766 6999999999999999999999999999887 69999996 6899888
Q ss_pred CCCCCC---------CcCCCCC-CC-----CceeEcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCc
Q 040805 324 RSQEGP---------SIWPFAG-ES-----RGTFNLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM 386 (540)
Q Consensus 324 ~~~~~~---------s~~~~~~-~~-----~~~fnL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm 386 (540)
|+.... +.|+..+ .+ ...+||. +++|+|++.+|+++.+++.+||+|+++||++++++|.||||
T Consensus 256 p~~~~~~~~~~~~~~~~~~~nglee~~c~~~l~~ni~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm 335 (465)
T 3qac_A 256 PPSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAM 335 (465)
T ss_dssp -------------------------CTTTSCCEEETTCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCE
T ss_pred CcccchhhhhcccccccccCCCccccccceeccccccccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcE
Confidence 864210 1122111 11 1234554 56778888999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC
Q 040805 387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN 466 (540)
Q Consensus 387 ~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e 466 (540)
++|||||+|++|+||++|+++|+||++++. ++++..|++|||||||+||+|+++++ ++
T Consensus 336 ~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~---------------------~~f~~~l~~GDVfvvP~g~~h~~~ag-~e 393 (465)
T 3qac_A 336 MAPHYNLNAHNIMYCVRGRGRIQIVNDQGQ---------------------SVFDEELSRGQLVVVPQNFAIVKQAF-ED 393 (465)
T ss_dssp EEEEEESSCCEEEEEEEEEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EE
T ss_pred eeeEECCCCCEEEEEEeCCEEEEEEeCCCc---------------------EEEEEEecCCeEEEECCCcEEEEEcC-CC
Confidence 999999999999999999999999999763 68899999999999999999999865 77
Q ss_pred CEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 467 NLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 467 ~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
+++|++|.+++ ++...+|||+++||+++|++||++||+++.++|++|+.++++++|++++.
T Consensus 394 ~~~~l~f~~s~-np~~~~LaG~~sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e~~i~~~~~ 454 (465)
T 3qac_A 394 GFEWVSFKTSE-NAMFQSLAGRTSAIRSLPIDVVSNIYQISREEAFGLKFNRPETTLFRSSG 454 (465)
T ss_dssp EEEEEEEESST-TCCEEESSSSSBHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSEECCCC
T ss_pred CeEEEEEecCC-CCcccccccchhhhhhCCHHHHHHHhCCCHHHHHHHHhccCccEEECCcc
Confidence 89999998776 78999999999999999999999999999999999999999999998875
No 6
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=100.00 E-value=1.5e-73 Score=611.58 Aligned_cols=350 Identities=20% Similarity=0.284 Sum_probs=309.4
Q ss_pred cceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE------
Q 040805 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY------ 223 (540)
Q Consensus 150 ~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~------ 223 (540)
.++|++++|.+++| +.++|.|+++ .++++.++|+|||+++||||+|++|+||++|++++|+|.|+|+++|
T Consensus 18 ~~~~~se~G~~e~w---~~~~~~L~~~-gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~ 93 (466)
T 3kgl_A 18 SHVLKAEAGRIEVW---DHHAPQLRCS-GVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVF 93 (466)
T ss_dssp SEEEEETTEEEEEC---CTTSHHHHHH-TEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSS
T ss_pred cceeeCCCcEEEEE---CCCChhhccC-CeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhccccc
Confidence 36899999999997 6677999965 5667777999999999999999999999999999999999988764
Q ss_pred ------------------------------------------------------eeCCCcEEEECCCCeEEEEeCCCCcc
Q 040805 224 ------------------------------------------------------NVKRGDIIRVPSGNTFYVTNTDDDEK 249 (540)
Q Consensus 224 ------------------------------------------------------~l~~GDv~~iPaG~~h~~~N~g~~e~ 249 (540)
+|++||||+||||++||++|+| +++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g-~e~ 172 (466)
T 3kgl_A 94 QPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDG-NQP 172 (466)
T ss_dssp CCCC-----------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCS-SSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCC-CCc
Confidence 8999999999999999999998 789
Q ss_pred EEEEEEeecCCCC----CcccccccCCCCC-------------cccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcE
Q 040805 250 LYIVKFIKSINLP----GQYEAFYGAGGEN-------------PESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAM 311 (540)
Q Consensus 250 l~~v~i~~~~~~p----g~~~~f~LaG~~~-------------~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~I 311 (540)
|++|++++++|.+ +.++.|||||+++ +.|||++|++++|++||||+.+++++|+++|+ .|+|
T Consensus 173 L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~G~I 252 (466)
T 3kgl_A 173 LVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNI 252 (466)
T ss_dssp EEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCSCSE
T ss_pred EEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCceeE
Confidence 9999999998864 4689999999985 35999999999999999999999999999987 7999
Q ss_pred EEccchhhhccCCCCCCC--CcCCCCCC-----CCceeEcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEc
Q 040805 312 VKASKQQIRALSRSQEGP--SIWPFAGE-----SRGTFNLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANIS 382 (540)
Q Consensus 312 v~~~~e~l~~l~~~~~~~--s~~~~~~~-----~~~~fnL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~ 382 (540)
|+++ ++|+.++|+.... ..+..+.+ ....+||. +++|+|++.+|+++.+++.+||+|++++|++++++|.
T Consensus 253 v~v~-~~l~~~~p~~~~~~~~~~~~glee~~c~~r~~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~ 331 (466)
T 3kgl_A 253 IRVQ-GPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIR 331 (466)
T ss_dssp EECC-SCCCCCCCCC--------------CCSSCCCEEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEE
T ss_pred EEec-CcccccCCcccccccccccCCccccccceeccccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEEee
Confidence 9998 7899888863110 00111111 12367887 4667899999999999999999999999999999999
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
||||++|||||+|++|+||++|+++|+||++++. ++++.+|++|||||||+|++|++++
T Consensus 332 pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~---------------------~~f~~~l~~GDV~v~P~G~~H~~~a 390 (466)
T 3kgl_A 332 QNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGD---------------------RVFDGQVSQGQLLSIPQGFSVVKRA 390 (466)
T ss_dssp TTEEEEEEEESSCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEE
T ss_pred cCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCc---------------------EEEEeEecCCcEEEECCCCeEEEEc
Confidence 9999999999999999999999999999999863 6789999999999999999999965
Q ss_pred cCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 463 SQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 463 ~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
++++++||+|.+++ ++...+|||+++||+++|++||++||+++.++|++|+.++++++|+++++
T Consensus 391 -g~e~~~~l~~f~s~-np~~~~LaG~~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q~e~~i~~~~~ 454 (466)
T 3kgl_A 391 -TSEQFRWIEFKTNA-NAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSG 454 (466)
T ss_dssp -CSSEEEEEEEESSS-SCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEEECC-
T ss_pred -CCCCEEEEEEECCC-CCccccccchhhhhhhCCHHHHHHHhCcCHHHHHHHHhccCccEEECCCc
Confidence 57889999998777 78899999999999999999999999999999999999999999998864
No 7
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=100.00 E-value=2.1e-72 Score=606.61 Aligned_cols=348 Identities=19% Similarity=0.306 Sum_probs=305.7
Q ss_pred cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE----
Q 040805 150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY---- 223 (540)
Q Consensus 150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~---- 223 (540)
.++|++++|.+++| +.+++.|. ||+.+|+ +|+|||+++|||++|++|+||++|+|++|+|+|++.++|
T Consensus 21 ~~~~~se~G~~e~~---~~~~~~L~~~gvs~~R~---~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~ 94 (496)
T 3ksc_A 21 DNRIESEGGLIETW---NPNNKQFRCAGVALSRA---TLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQ 94 (496)
T ss_dssp SEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC-----
T ss_pred ccccCCCCcEEEec---cccchhhccCCceEEEE---EecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhh
Confidence 37899999999997 66778998 8887877 999999999999999999999999999999999876654
Q ss_pred ------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc-----
Q 040805 224 ------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP----- 276 (540)
Q Consensus 224 ------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~----- 276 (540)
+|++||||+||+|++||++|+| +++|++|++++++|. |+.++.|||||++.+
T Consensus 95 ~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G-~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~ 173 (496)
T 3ksc_A 95 ESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQ-DTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQY 173 (496)
T ss_dssp ----------CCCCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGG
T ss_pred hcccccccccccchheeeccCCCCEEEECCCCcEEEEcCC-CCCEEEEEEeccCcccccCCCceeeeEecCCCccccccc
Confidence 9999999999999999999998 679999999988774 778999999999654
Q ss_pred --------------ccccccCCHHHHHHhcCCCHHHHHHHh---ccCCCCcEEEccchhhhccCCCCCCC----------
Q 040805 277 --------------ESFLRAFSWEILESAFKTKRDSLERVL---FQQDQGAMVKASKQQIRALSRSQEGP---------- 329 (540)
Q Consensus 277 --------------~s~l~~f~~evLa~Af~v~~~~v~~l~---~~q~~g~Iv~~~~e~l~~l~~~~~~~---------- 329 (540)
.|||++|++++|++||||+.+++++|+ .++..|.||+++. +|+.|+|+.+..
T Consensus 174 ~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~~-~l~~~~P~~~~~~~~~~~~~~~ 252 (496)
T 3ksc_A 174 QHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKG-GLSIISPPEKQARHQRGSRQEE 252 (496)
T ss_dssp CC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECSS-CCCCCCCC--------------
T ss_pred cccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEecC-cccccCCchhhhchhhcccchh
Confidence 699999999999999999999999999 3445799999986 888887753110
Q ss_pred --C-------------------------cCC----------------------CCCCCC----------ceeEcC--CCC
Q 040805 330 --S-------------------------IWP----------------------FAGESR----------GTFNLF--GKR 348 (540)
Q Consensus 330 --s-------------------------~~~----------------------~~~~~~----------~~fnL~--~~~ 348 (540)
. .|+ +.++.. ..+||. +.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nGlee~~c~~~l~~Ni~~p~~~ 332 (496)
T 3ksc_A 253 DEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSP 332 (496)
T ss_dssp ---------------------------------------------------------------CCSSSCCEEECSTTSCC
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCccccccchhhhccccccccC
Confidence 0 011 000011 245666 456
Q ss_pred CcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805 349 PSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS 428 (540)
Q Consensus 349 P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~ 428 (540)
|+|++.+|+++.+++.+||+|+++||++++++|.||||++|||||+|++|+||++|+++|+||++++.
T Consensus 333 di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~------------ 400 (496)
T 3ksc_A 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGN------------ 400 (496)
T ss_dssp SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC------------
T ss_pred CcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCc------------
Confidence 78999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCH
Q 040805 429 TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRA 508 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~ 508 (540)
++|+.+|++|||||||+|++|+++|+ +++++|++|.+++ ++...+|||+++||++||++||++||+++.
T Consensus 401 ---------~~f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~-np~~~~LaG~~sv~~~~p~eVLa~aF~v~~ 469 (496)
T 3ksc_A 401 ---------TVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTND-RAGIARLAGTSSVINNLPLDVVAATFNLQR 469 (496)
T ss_dssp ---------EEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESST-TCCEEESSSTTCTTTTSCHHHHHHHHTCCH
T ss_pred ---------EEEEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECCC-CCccccccchhhhhhhCCHHHHHHHHCcCH
Confidence 68888999999999999999999887 7889999998776 789999999999999999999999999999
Q ss_pred HHHHHhhcCCCCceEEcCCC
Q 040805 509 DEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 509 e~v~kl~~~q~e~~f~~~~~ 528 (540)
++|++|+.++++.+|+|+++
T Consensus 470 ~~v~~Lk~~q~e~~i~~~~~ 489 (496)
T 3ksc_A 470 NEARQLKSNNPFKFLVPARE 489 (496)
T ss_dssp HHHHHHHHSCCCSSEECCCC
T ss_pred HHHHHHHhcCCccEEeCCCC
Confidence 99999999999999999987
No 8
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=100.00 E-value=8.4e-73 Score=597.93 Aligned_cols=359 Identities=29% Similarity=0.523 Sum_probs=312.0
Q ss_pred cCCc-ccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE
Q 040805 145 EGDE-ESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY 223 (540)
Q Consensus 145 ~~~~-f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~ 223 (540)
++++ |+++|++++|+|++|++|+.++|.|+++.+++++.++|+|||+++||||+|++|+||++|++++|+|++++.+++
T Consensus 17 ~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~ 96 (397)
T 2phl_A 17 NSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREY 96 (397)
T ss_dssp CGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEE
T ss_pred ccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEE
Confidence 6666 999999999999999999998999999888999999999999999999999999999999999999999999999
Q ss_pred eeCCCcE------EEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHH
Q 040805 224 NVKRGDI------IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRD 297 (540)
Q Consensus 224 ~l~~GDv------~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~ 297 (540)
+|++||+ |+||+|++||++|+|++++|++|++++++++| .+.+|+|+|+..+.|||++||++||++||+++.+
T Consensus 97 ~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~-~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~ 175 (397)
T 2phl_A 97 FFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP-QIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFE 175 (397)
T ss_dssp EEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSS-SCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHH
T ss_pred EECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCc-cceeeeccCCCchhHHhhcCCHHHHHHHhCCCHH
Confidence 9999999 99999999999999867899999999998887 7889999999888899999999999999999999
Q ss_pred HHHHHh-ccC--CCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccc
Q 040805 298 SLERVL-FQQ--DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDI 374 (540)
Q Consensus 298 ~v~~l~-~~q--~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~i 374 (540)
++++|+ +++ .+|+||+++.+++++++.+ +++ +..+.|.+..|+|+|.+|+++++++.+ ++|
T Consensus 176 ~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~--~~~--------~~~~~l~~~~p~~~n~~G~~~~v~~~~------l~i 239 (397)
T 2phl_A 176 EINRVLFEEEGQQEGVIVNIDSEQIKELSKH--AKS--------SSRKSLSKQDNTIGNEFGNLTERTDNS------LNV 239 (397)
T ss_dssp HHHHHHTCSTTCBSSSEEECCTTTHHHHHHH--HHT--------C---------CEEEETTEEEEEEEETT------TTE
T ss_pred HHHhhhhcccccccCceEEcCcccchhhhcc--CCC--------cccccccccCCcccCCCCeEEEEeecc------CCe
Confidence 999999 553 4799999998887766543 111 123457778899999999999999877 789
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
++++++|.||||++|||||+|++|+||++|+|+++||+++++. .+..+++++.+|++|||||||+
T Consensus 240 s~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~---------------~~~g~~~~~~~l~~GDV~vvP~ 304 (397)
T 2phl_A 240 LISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK---------------ETLEYESYRAELSKDDVFVIPA 304 (397)
T ss_dssp EEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC-----------------CCSCEEEEEEEEETTCEEEECT
T ss_pred eEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccc---------------cCCCceEEEEEecCCCEEEECC
Confidence 9999999999999999999999999999999999999996531 0122478999999999999999
Q ss_pred CCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccCC-----HHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 455 GHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVME-----SEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 455 G~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~-----~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
|++|+++|++ ++.|++|.++++++..++||| .++||+++| ++||++||+++.+++++|++++++++|+++++
T Consensus 305 G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~~~p~~~~~~eVla~af~v~~~~v~~l~~~~~e~~i~~~~~ 382 (397)
T 2phl_A 305 AYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAHH 382 (397)
T ss_dssp TCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCCCSEEECC-
T ss_pred CCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHhhCCCccchHHHHHHHhCcCHHHHHHHHhcCCccEEeCCCc
Confidence 9999999985 899999999998899999999 789999999 99999999999999999999999999999987
Q ss_pred chhhhcccc
Q 040805 529 RWHQQQQGR 537 (540)
Q Consensus 529 ~~~~~~~~~ 537 (540)
+++.+++||
T Consensus 383 ~~~~~~~~~ 391 (397)
T 2phl_A 383 HQQEQQKGR 391 (397)
T ss_dssp ---------
T ss_pred ccchhcccc
Confidence 422234444
No 9
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=100.00 E-value=1.1e-70 Score=591.34 Aligned_cols=347 Identities=19% Similarity=0.291 Sum_probs=304.6
Q ss_pred ceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce-------
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE------- 221 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~------- 221 (540)
++|+|++|.+++| +.+++.|+ |++.+|+ +|+|||+++||||+|++|+||++|+|++|+|+|+|++
T Consensus 39 ~~v~se~G~~~~~---~~~~~~l~~~gvs~~r~---~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~ 112 (459)
T 2e9q_A 39 RRAEAEAGFTEVW---DQDNDEFQCAGVNMIRH---TIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLR 112 (459)
T ss_dssp EEEEETTEEEEEC---CTTSHHHHHHTEEEEEE---EECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC
T ss_pred ceEecCCcEEEec---CCCChhhccCceEEEEE---EEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchh
Confidence 6789999999995 77789998 7777776 9999999999999999999999999999999999764
Q ss_pred ---------------EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc------
Q 040805 222 ---------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP------ 276 (540)
Q Consensus 222 ---------------~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~------ 276 (540)
+++|++||||+||+|++||++|+| +++|++|++++++|. |+.+++|||||+..+
T Consensus 113 ~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g-~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~ 191 (459)
T 2e9q_A 113 RSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRG-QSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVE 191 (459)
T ss_dssp -------CCCEEECCCEEEETTEEEEECTTCCEEEEECS-SSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTC
T ss_pred hccccccccccccceeEEecCCCEEEECCCCCEEEEeCC-CCCEEEEEEecCCCcccccCcccceeeccCCccccchhhh
Confidence 458999999999999999999998 679999999998873 456899999998754
Q ss_pred ---------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCCC-C---C------
Q 040805 277 ---------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQEG-P---S------ 330 (540)
Q Consensus 277 ---------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~~-~---s------ 330 (540)
.+||++||++||++||+|+.+++++|++.++ .|+||+++ ++|+.++|.... . .
T Consensus 192 ~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~-~~l~~~~P~~~~~e~~~~~~~~~~ 270 (459)
T 2e9q_A 192 EWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVD-EDFEVLLPEKDEEERSRGRYIESE 270 (459)
T ss_dssp C------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECC-SSCCTTTTC---------------
T ss_pred ccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeC-CcccccCCccchhhhccccccccc
Confidence 3999999999999999999999999999887 69999998 467777664211 0 0
Q ss_pred -cCCCC-CCCCceeEcC------CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEE
Q 040805 331 -IWPFA-GESRGTFNLF------GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVV 402 (540)
Q Consensus 331 -~~~~~-~~~~~~fnL~------~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~ 402 (540)
.|+.+ .+...+|+|. ++.|+|++.+|+++.+++.+||+|++++|++++++|.||||++|||||+|++|+||+
T Consensus 271 ~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~ 350 (459)
T 2e9q_A 271 SESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYAT 350 (459)
T ss_dssp ---------CGGGSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEE
T ss_pred ccccCCccccccceeeeecccccccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEE
Confidence 11111 1222355554 677889999999999999999999999999999999999999999999999999999
Q ss_pred eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcc
Q 040805 403 AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR 482 (540)
Q Consensus 403 ~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~ 482 (540)
+|+++|+||++++. ++++.+|++|||||||+|++|++.|+ +++++||+|.+++ ++..
T Consensus 351 ~G~~~v~vv~~~g~---------------------~~~~~~l~~GDv~v~P~G~~H~~~ng-~~~~~~l~~~~s~-~~~~ 407 (459)
T 2e9q_A 351 RGNARVQVVDNFGQ---------------------SVFDGEVREGQVLMIPQNFVVIKRAS-DRGFEWIAFKTND-NAIT 407 (459)
T ss_dssp EEEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESSS-SCCE
T ss_pred eeEEEEEEEeCCCC---------------------EEEeeEEeCCcEEEECCCCEEEEEeC-CCCeEEEEEecCC-CCcc
Confidence 99999999999763 68888999999999999999999994 7889999998887 7899
Q ss_pred ccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 483 FPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 483 ~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
.+|||+++||+++|++||++||+++.+++++|+.++++.+||++++
T Consensus 408 ~~laG~~s~~~~~p~~Vla~af~v~~~~v~~l~~~~~e~~i~~~~~ 453 (459)
T 2e9q_A 408 NLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRVLSPGR 453 (459)
T ss_dssp EESSSSSSHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSEECSCC
T ss_pred eeecchhHHHHhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCCc
Confidence 9999999999999999999999999999999999999999999875
No 10
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=100.00 E-value=2e-70 Score=590.44 Aligned_cols=347 Identities=16% Similarity=0.300 Sum_probs=306.5
Q ss_pred ceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceE------
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRES------ 222 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~------ 222 (540)
.+|++++|.+++| +.++|.|. ||+.+|+ +|.|+|+++||||+|++|+||++|++++|+|.|+|+++
T Consensus 24 ~~i~se~G~~e~w---~~~~p~l~~~Gvs~~R~---~i~p~Gl~lPh~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~ 97 (531)
T 3fz3_A 24 NRIQAEAGQIETW---NFNQGDFQCAGVAASRI---TIQRNGLHLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQ 97 (531)
T ss_dssp EEEEETTEEEEEC---CTTSHHHHHHTEEEEEE---EECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEECCCC
T ss_pred hhcccCCceEEEe---CCCChhhccCcceEEEE---EecCCCEeCCccCCCCeEEEEEECcEEEEEEcCCCccccccccc
Confidence 7899999999997 66789999 8888888 99999999999999999999999999999999997752
Q ss_pred ----------------------------------------------------------------------------EeeC
Q 040805 223 ----------------------------------------------------------------------------YNVK 226 (540)
Q Consensus 223 ----------------------------------------------------------------------------~~l~ 226 (540)
++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr 177 (531)
T 3fz3_A 98 SSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIR 177 (531)
T ss_dssp -------------------------------------------------------------------CCSCEESCCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeeccc
Confidence 4789
Q ss_pred CCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc--------------------------
Q 040805 227 RGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP-------------------------- 276 (540)
Q Consensus 227 ~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~-------------------------- 276 (540)
+||||+||+|++||++|+| +++|++|+++|++|. |+.++.|||||++.+
T Consensus 178 ~GDviaiPaG~~~w~yN~G-~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (531)
T 3fz3_A 178 EGDVVAIPAGVAYWSYNDG-DQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPF 256 (531)
T ss_dssp TTEEEEECTTCCEEEECCS-SSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC----------------------
T ss_pred CCcEEEECCCCeEEEEeCC-CceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccccc
Confidence 9999999999999999988 579999999999875 788999999999543
Q ss_pred ------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCCC---C------CcC--
Q 040805 277 ------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQEG---P------SIW-- 332 (540)
Q Consensus 277 ------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~~---~------s~~-- 332 (540)
.|||+||++++|++||||+.+++++|++.++ .|.||+|+ ++|+.++|.... . ..+
T Consensus 257 ~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~-~~l~~~~P~~~~~~~~~~~~~~~~~~~ 335 (531)
T 3fz3_A 257 GRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVR-GNLDFVQPPRGRQEREHEERQQEQLQQ 335 (531)
T ss_dssp ----------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECS-SSCCCSCCC------------------
T ss_pred cccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEEEec-CCCcccCCchhhhhhhhcccccccccc
Confidence 4899999999999999999999999998887 69999998 689988876310 0 000
Q ss_pred ----------CCCCC-----CCceeEcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCC
Q 040805 333 ----------PFAGE-----SRGTFNLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRS 395 (540)
Q Consensus 333 ----------~~~~~-----~~~~fnL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A 395 (540)
.++-. ...+|||. +..|+|++.+|+++.+++.+||+|++|+|++++++|.||||+.|||||+|
T Consensus 336 ~~~~~~~~~~~nGleet~c~~rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A 415 (531)
T 3fz3_A 336 ERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNA 415 (531)
T ss_dssp ------------CGGGTGGGCCCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSC
T ss_pred cccccccccCCCCcccccccceeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCC
Confidence 01111 12378888 56788989999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805 396 TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 396 ~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
++|+||++|+++|+||++++. ++++..|++|||||||+|++|+++++ +++++|++|++
T Consensus 416 ~Ei~yVl~G~~rv~~V~~~G~---------------------~v~~~~L~~GDV~v~P~G~~H~~~ag-~e~l~flaF~s 473 (531)
T 3fz3_A 416 HSVVYVIRGNARVQVVNENGD---------------------AILDQEVQQGQLFIVPQNHGVIQQAG-NQGFEYFAFKT 473 (531)
T ss_dssp CEEEEEEEEEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEES
T ss_pred CEEEEEEeCcEEEEEEeCCCc---------------------EEEEEEecCCeEEEECCCCeEEEecC-CCCEEEEEEec
Confidence 999999999999999999763 67889999999999999999998876 78899999987
Q ss_pred cCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 476 ~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
+. ++...+|||+++||++||++||++||+|+.++|++|+.++++++||.+|.
T Consensus 474 s~-np~~~~LaG~~svf~~lP~eVLa~aF~v~~e~v~kLk~~~~es~i~~pp~ 525 (531)
T 3fz3_A 474 EE-NAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALSSSQ 525 (531)
T ss_dssp ST-TCCEEESSSTTCHHHHSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECC--
T ss_pred CC-CCcceeccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCceEECCCC
Confidence 64 78899999999999999999999999999999999999999999998876
No 11
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=100.00 E-value=3e-67 Score=567.29 Aligned_cols=348 Identities=22% Similarity=0.355 Sum_probs=302.2
Q ss_pred cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce------
Q 040805 150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE------ 221 (540)
Q Consensus 150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~------ 221 (540)
.++|+|++|.|++| +.+++.|+ |++.+|+ +|+|||+++||||+|++|+||++|+|++|+|+|+|++
T Consensus 23 ~~~v~se~G~~e~~---~~~~~~l~~~gvs~~r~---~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~ 96 (476)
T 1fxz_A 23 DNRIESEGGLIETW---NPNNKPFQCAGVALSRC---TLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQ 96 (476)
T ss_dssp SCEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC-----
T ss_pred ceEEecCCceEEee---CCCChhhccCceEEEEE---EEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccc
Confidence 36889999999995 77889998 7877777 9999999999999999999999999999999999763
Q ss_pred -----------------EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc----
Q 040805 222 -----------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP---- 276 (540)
Q Consensus 222 -----------------~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~---- 276 (540)
+++|++||||+||+|++||++|+| +++|++|++++++|. |+.+++|||||+..+
T Consensus 97 ~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G-~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~ 175 (476)
T 1fxz_A 97 QPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNE-DTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLK 175 (476)
T ss_dssp -------------CCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHH
T ss_pred cccccccccccccccceEEEEeCCCEEEECCCCcEEEEeCC-CCCEEEEEEecCCCcccccCCccceeeccCCccccccc
Confidence 579999999999999999999998 679999999987774 457899999998653
Q ss_pred -----------------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC---CCcEEEccchhhhccCCCCCCCC
Q 040805 277 -----------------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD---QGAMVKASKQQIRALSRSQEGPS 330 (540)
Q Consensus 277 -----------------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~---~g~Iv~~~~e~l~~l~~~~~~~s 330 (540)
.|||++||++||++||+|+.+++++|++.++ .|+||+++. +|+.++|......
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~~-~l~~~~P~~~~~e 254 (476)
T 1fxz_A 176 YQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKG-GLSVIKPPTDEQQ 254 (476)
T ss_dssp HHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSS-CCCCCCC------
T ss_pred cccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeCC-cccccCCccchhh
Confidence 4899999999999999999999999999887 799999974 6776666421000
Q ss_pred cC---------------------------------CCCC-CCCceeEcC------CCCCcccCCCceEEEecCCCCCCCc
Q 040805 331 IW---------------------------------PFAG-ESRGTFNLF------GKRPSHSNNFGELFEADSNDFRPLE 370 (540)
Q Consensus 331 ~~---------------------------------~~~~-~~~~~fnL~------~~~P~~~n~~G~~~~~~~~~~p~L~ 370 (540)
.| ..+. +...+|+|. ++.|+|++.+|+++++++.+||+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~~~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~ 334 (476)
T 1fxz_A 255 QRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALS 334 (476)
T ss_dssp ------------------------------------------CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGT
T ss_pred hccccchhhhhcccccccccccccccccccccccccCCccccccceeeeccccccccCCcccCCCeEEEEeccccCcccc
Confidence 00 0110 111355554 5667899999999999999999999
Q ss_pred cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805 371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY 450 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~ 450 (540)
+++|++++++|.||||+.|||||+|++|+||++|+++++|+++++. ++++..|++|||+
T Consensus 335 ~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~---------------------~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 335 WLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE---------------------RVFDGELQEGRVL 393 (476)
T ss_dssp TTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTCEE
T ss_pred cCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCC---------------------EEeeeEEcCCCEE
Confidence 9999999999999999999999999999999999999999998763 5777889999999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 451 IVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 451 vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
|||+|++|++.| ++++++|++|.+++ ++...+|||+++||+++|++||++||+++.+++++|+.++++.+|||++.
T Consensus 394 viP~G~~H~~~n-g~~~l~~l~f~~s~-~p~~~~laG~~s~~~~~p~~Vla~af~~~~~~v~~l~~~~~e~~i~~p~~ 469 (476)
T 1fxz_A 394 IVPQNFVVAARS-QSDNFEYVSFKTND-TPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFKFLVPPQE 469 (476)
T ss_dssp EECTTCEEEEEE-CSTTEEEEEEESSS-SCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECCCC
T ss_pred EECCCCeEEEEe-CCCCEEEEEEECCC-CCceeEccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhhCCCcEEeCCcc
Confidence 999999999999 68899999998776 78899999999999999999999999999999999999999999999876
No 12
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=100.00 E-value=5.9e-67 Score=566.44 Aligned_cols=348 Identities=20% Similarity=0.296 Sum_probs=300.1
Q ss_pred cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce------
Q 040805 150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE------ 221 (540)
Q Consensus 150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~------ 221 (540)
..+|++++|.+++| +.++|.|+ |++.+|+ +|+|||+++||||++++|+||++|+|++|+|.|+|++
T Consensus 23 ~~~~~se~G~~e~~---~~~~~~l~~~gvs~~r~---~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~ 96 (510)
T 3c3v_A 23 DNRIESEGGYIETW---NPNNQEFECAGVALSRL---VLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPA 96 (510)
T ss_dssp CEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEEC
T ss_pred hhhhccCCceEEEe---CCCCcccccCcEEEEEE---EECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCcccccccc
Confidence 36999999999996 77778998 6666665 9999999999999999999999999999999998742
Q ss_pred ------------------------------EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC----cccc
Q 040805 222 ------------------------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG----QYEA 267 (540)
Q Consensus 222 ------------------------------~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg----~~~~ 267 (540)
.++|++||||+||+|++||++|+| +++|++|++++++|.+. .+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g-~~~l~~v~~~d~~n~~nqld~~~r~ 175 (510)
T 3c3v_A 97 QQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDH-DTDVVAVSLTDTNNNDNQLDQFPRR 175 (510)
T ss_dssp CC--------------------CEEEEESCCEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTBTTCCSCSCCCC
T ss_pred ccccccccccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCC-CCCEEEEEEeCCCCcccccccccce
Confidence 368999999999999999999998 67999999999888644 3789
Q ss_pred cccCCCCC-------------------------------------------------------cccccccCCHHHHHHhc
Q 040805 268 FYGAGGEN-------------------------------------------------------PESFLRAFSWEILESAF 292 (540)
Q Consensus 268 f~LaG~~~-------------------------------------------------------~~s~l~~f~~evLa~Af 292 (540)
|||||++. +.|||+||+++||++||
T Consensus 176 F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~af 255 (510)
T 3c3v_A 176 FNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQAF 255 (510)
T ss_dssp EESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHHHHH
T ss_pred eEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHHHHh
Confidence 99999653 24899999999999999
Q ss_pred CCC-HHHHHHHhccCC---CCcEEEccchhhhccCCCCC-------CC-----C----------cCC---CCC-CCCcee
Q 040805 293 KTK-RDSLERVLFQQD---QGAMVKASKQQIRALSRSQE-------GP-----S----------IWP---FAG-ESRGTF 342 (540)
Q Consensus 293 ~v~-~~~v~~l~~~q~---~g~Iv~~~~e~l~~l~~~~~-------~~-----s----------~~~---~~~-~~~~~f 342 (540)
||+ .+++++|++.++ .|+||+++ ++|+.++|... .. . .|. .+. ....+|
T Consensus 256 ~v~~~~~~~~l~~~~~~~~~g~Iv~v~-~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~c~~ 334 (510)
T 3c3v_A 256 QVDDRQIVQNLRGENESEEQGAIVTVR-GGLRILSPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTA 334 (510)
T ss_dssp TCCCHHHHHHHTTTTCCTTSCSEEECT-TCCCCCCC-----------------------------------CTTTTGGGC
T ss_pred CCCHHHHHHHhhccccccccccEEEeC-CcccccCCchhccccchhhhhhhhccccccccccccccccccCCccccccce
Confidence 999 999999998887 69999998 57777766421 00 0 011 011 112355
Q ss_pred EcC------CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805 343 NLF------GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS 416 (540)
Q Consensus 343 nL~------~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~ 416 (540)
+|. +..|+|++.+|+++++++.+||+|++++|++++++|.||||+.|||||+|++|+||++|+++++|+++++.
T Consensus 335 ~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~ 414 (510)
T 3c3v_A 335 TVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGN 414 (510)
T ss_dssp CCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC
T ss_pred eeeeccCccccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCC
Confidence 554 56678899999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCC
Q 040805 417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVME 496 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~ 496 (540)
++++..|++|||+|||+|++|++.| +++++.|++|.+++ ++...+|||+++||+++|
T Consensus 415 ---------------------~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~-~p~~~~LaG~~svf~~lp 471 (510)
T 3c3v_A 415 ---------------------RVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDS-RPSIANLAGENSVIDNLP 471 (510)
T ss_dssp ---------------------EEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEEEESSS-SCCEEESSSTTSTTTTSC
T ss_pred ---------------------EEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEEEECCC-CcceeecccHhHHHHhCC
Confidence 6777889999999999999999999 68899999998776 788999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805 497 SEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528 (540)
Q Consensus 497 ~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~ 528 (540)
++||++||+++.++|++|+.++++.+|||+++
T Consensus 472 ~eVla~aF~v~~e~v~~L~~~~~e~~i~~p~~ 503 (510)
T 3c3v_A 472 EEVVANSYGLPREQARQLKNNNPFKFFVPPSQ 503 (510)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCCCSSEECC--
T ss_pred HHHHHHHHCcCHHHHHHHHhhCCCcEEECCcc
Confidence 99999999999999999999999999999875
No 13
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=100.00 E-value=8.7e-63 Score=534.17 Aligned_cols=345 Identities=18% Similarity=0.291 Sum_probs=292.6
Q ss_pred cceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc---------
Q 040805 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--------- 220 (540)
Q Consensus 150 ~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--------- 220 (540)
.++|+|++|.+++| +.+++.|+++. ++++.++|+|||+++|||+++++|+||++|+|++|+|+|+|+
T Consensus 20 ~~~~~se~G~~e~~---~~~~~~l~~~g-v~~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~ 95 (493)
T 2d5f_A 20 DHRVESEGGLIETW---NSQHPELQCAG-VTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQ 95 (493)
T ss_dssp CEEEECSSEEEEEC---CTTSHHHHHHT-CEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC--
T ss_pred cceeecCCcEEEEe---CCCChhhccCC-EEEEEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCcccccccccc
Confidence 57999999999995 77779998543 556666999999999999999999999999999999999863
Q ss_pred -----------------eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC----cccccccCCCCC----
Q 040805 221 -----------------ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG----QYEAFYGAGGEN---- 275 (540)
Q Consensus 221 -----------------~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg----~~~~f~LaG~~~---- 275 (540)
..++|++||||+||+|++||++|+| +++|++|++++++|... .++.|||||+..
T Consensus 96 ~~~~~~~~~~~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g-~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~ 174 (493)
T 2d5f_A 96 SSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTG-DEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHP 174 (493)
T ss_dssp -----------CSEEESCEEEEETTEEEEECTTCCEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCG
T ss_pred ccccccccccccccccceEEEecCCCEEEECCCCcEEEEeCC-CCCEEEEEEecCcCcccccccccceeeccCCccccch
Confidence 3679999999999999999999998 57999999998877643 378999999753
Q ss_pred --------------------------cccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCC-
Q 040805 276 --------------------------PESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQE- 327 (540)
Q Consensus 276 --------------------------~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~- 327 (540)
+.|||++|+++||++||+|+.+++++|++.++ .|+||+++.+ |+.++|...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~v~~~-l~~~~P~~~~ 253 (493)
T 2d5f_A 175 ETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGG-LSVISPKWQE 253 (493)
T ss_dssp GGTC---------------------CCCCGGGGSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECTTC-CCCCCSCC--
T ss_pred hhhhhcccccccccccccccccccccccchhhcCCHHHHHhHhCCCHHHHHHhhhcccCcccEEEeCCC-ccccCCchhh
Confidence 35899999999999999999999999999887 6999998753 443333210
Q ss_pred ----C----------------------------------------------------CCcCCC----CCCCC-cee----
Q 040805 328 ----G----------------------------------------------------PSIWPF----AGESR-GTF---- 342 (540)
Q Consensus 328 ----~----------------------------------------------------~s~~~~----~~~~~-~~f---- 342 (540)
. .+.|.+ +..+. .+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~l~~ 333 (493)
T 2d5f_A 254 QEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHE 333 (493)
T ss_dssp -------------------------------------------------------------------CTTTTGGGCCCEE
T ss_pred hhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccCCccccccceeeee
Confidence 0 000111 11111 234
Q ss_pred EcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcc
Q 040805 343 NLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS 420 (540)
Q Consensus 343 nL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~ 420 (540)
||. ...|+|++.+|+++.+++.+||+|++++|++++++|.||||+.|||||+|++|+||++|+++++|+++++.
T Consensus 334 ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~---- 409 (493)
T 2d5f_A 334 NIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGN---- 409 (493)
T ss_dssp ECCCGGGCSEEETTTEEEEEESTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSC----
T ss_pred cccccCCCCcccCCCeEEEEeccccCccccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCC----
Confidence 444 45677889999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHH
Q 040805 421 ERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAK 500 (540)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evl 500 (540)
++++..|++|||+|||+|++|++.|+ +++++||+|.+++ ++...+| ++||+++|++||
T Consensus 410 -----------------~~~~~~l~~GDv~vvP~G~~H~~~n~-~e~~~~l~~~ts~-~p~~~~l---~s~~~~~p~eVl 467 (493)
T 2d5f_A 410 -----------------AVFDGELRRGQLLVVPQNFVVAEQGG-EQGLEYVVFKTHH-NAVSSYI---KDVFRAIPSEVL 467 (493)
T ss_dssp -----------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESST-TCCEEEH---HHHHHHSCHHHH
T ss_pred -----------------EEEeEEEcCCCEEEECCCCeEeeeeC-CCCEEEEEEECCC-CCcceeH---HHHHHhCCHHHH
Confidence 57777899999999999999999986 5789999997665 6788888 799999999999
Q ss_pred HHHcCCCHHHHHHhhcCCCCceEEcC
Q 040805 501 ELAFNTRADEVERVFGNQDQDWFFKG 526 (540)
Q Consensus 501 a~AF~vs~e~v~kl~~~q~e~~f~~~ 526 (540)
++||+++.++|++|+.++++++||++
T Consensus 468 a~aF~v~~~~v~~l~~~~~e~~i~~p 493 (493)
T 2d5f_A 468 SNSYNLGQSQVRQLKYQGNSGPLVNP 493 (493)
T ss_dssp HHHHTCCHHHHHHHHHSSCSSSEECC
T ss_pred HHHHCcCHHHHHHHHhcCCCceecCC
Confidence 99999999999999999999999875
No 14
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=100.00 E-value=3.7e-41 Score=351.33 Aligned_cols=323 Identities=15% Similarity=0.117 Sum_probs=257.6
Q ss_pred eecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCC-ceEEeeCCCcE
Q 040805 153 VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENN-RESYNVKRGDI 230 (540)
Q Consensus 153 ~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~-~~~~~l~~GDv 230 (540)
+.+++|.++.+.. +.|+....+.++.+++.||++..||||. ++|++||++|+++++++++++ ..++.|++||+
T Consensus 31 ~~~~~G~~~~~~~-----~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~ 105 (361)
T 2vqa_A 31 VLYDGGTTKQVGT-----YNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGL 105 (361)
T ss_dssp EEETTEEEEEEST-----TTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEE
T ss_pred eecCCceEEEeCh-----hhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCE
Confidence 4579999999842 3455444456666699999999999997 999999999999999999875 36799999999
Q ss_pred EEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCc
Q 040805 231 IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGA 310 (540)
Q Consensus 231 ~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~ 310 (540)
++||+|++||+.|.+ +++++++.++++.+. ..+..|.+ .+||++||.++|+++|+++.+.+++|...+. .
T Consensus 106 ~~ip~g~~H~~~n~~-~~~~~~l~v~~~~~~-~~~~~~~~------~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~--~ 175 (361)
T 2vqa_A 106 WYFPRGWGHSIEGIG-PDTAKFLLVFNDGTF-SEGATFSV------TDWLSHTPIAWVEENLGWTAAQVAQLPKKQV--Y 175 (361)
T ss_dssp EEECTTCEEEEEECS-SSCEEEEEEESSTTC-CTTSSEEH------HHHHHTSCHHHHHHHHTCCHHHHTTSCSSCC--C
T ss_pred EEECCCCeEEEEeCC-CCCEEEEEEECCCCc-cccceecH------hHHHHhCCHHHHHHHhCcCHHHHHhccccCc--e
Confidence 999999999999997 468999988865542 22333443 4899999999999999999999999987653 5
Q ss_pred EEEc--cchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccc
Q 040805 311 MVKA--SKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388 (540)
Q Consensus 311 Iv~~--~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~ 388 (540)
|+.. .+..+. +... . + ........+.|++...++.+.+.+|.++.+.+.++|.++ ++++..++|.||++..
T Consensus 176 i~~~~~~p~~~~-~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~ 248 (361)
T 2vqa_A 176 ISSYGPASGPLA-SATP--Q-G-QTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQ 248 (361)
T ss_dssp EECSSCCCCCGG-GCCC--S-S-CCCBCCSCCEEECTTSCCSEEETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEE
T ss_pred EEeCCCCCCccc-cccc--c-C-cCCCCCcceEeccccCCCcccCCCceEEEEehhhCcCcc--cceEEEEEECCCcccc
Confidence 6621 011111 1000 0 0 011123345678888878777889999999999999887 4889999999999999
Q ss_pred ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCE
Q 040805 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNL 468 (540)
Q Consensus 389 PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l 468 (540)
||||+++.+++||++|+++++++++++ +.....|++||+++||+|.+|++.|.+++++
T Consensus 249 ~H~H~~~~E~~~Vl~G~~~~~v~~~~g----------------------~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~ 306 (361)
T 2vqa_A 249 LHWHPNADEWQYVLDGEMDLTVFASEG----------------------KASVSRLQQGDVGYVPKGYGHAIRNSSQKPL 306 (361)
T ss_dssp EEECSSCCEEEEEEESCEEEEEECSTT----------------------CEEEEEECTTCEEEECTTCEEEEECCSSSCE
T ss_pred cccCCCCCEEEEEEeCEEEEEEEcCCC----------------------cEEEEEECCCCEEEECCCCeEEeEECCCCCE
Confidence 999999999999999999999999865 2334689999999999999999999888899
Q ss_pred EEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEE
Q 040805 469 EVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFF 524 (540)
Q Consensus 469 ~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~ 524 (540)
.++++.+.. ++....+| ++++++|++||++||+++.+++++|+ ++++.+|+
T Consensus 307 ~~l~~~~~~-~~~~~~~~---~~~~~~~~~vl~~~f~~~~~~~~~l~-~~~~~~~~ 357 (361)
T 2vqa_A 307 DIVVVFNDG-DYQSIDLS---TWLASNPSSVLGNTFQISPELTKKLP-VQDTIFSL 357 (361)
T ss_dssp EEEEEESSS-SCCCEEHH---HHHHTSCHHHHHHHHTCCHHHHTTSC-CSCCSEEC
T ss_pred EEEEEECCC-CcceeeHH---HHhhhCCHHHHHHHHCcCHHHHHhhh-ccCCcccc
Confidence 999886554 55666665 58999999999999999999999997 45566665
No 15
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=100.00 E-value=6.8e-35 Score=306.95 Aligned_cols=316 Identities=12% Similarity=0.125 Sum_probs=245.8
Q ss_pred eecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEE
Q 040805 153 VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDII 231 (540)
Q Consensus 153 ~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~ 231 (540)
..+++|.++.+.+ ..|++...+.++.+.+.||+...||||.+.+++||++|++++++++.++. .++.|++||++
T Consensus 58 ~~~~~G~~~~~~~-----~~lp~~~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 58 RLEKGGYAREVTV-----RELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEETTEEEEEECT-----TTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred cccCCcEEEEecc-----ccCcccCceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 4579999999843 34554445667777999999999999999999999999999999986443 46799999999
Q ss_pred EECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcE
Q 040805 232 RVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAM 311 (540)
Q Consensus 232 ~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~I 311 (540)
+||+|++|++.|.+ ++++++.++++.. ...+..|.+ .+||+++|.++|+++|+++.+++.+|...+ ..|
T Consensus 133 ~ip~g~~H~~~n~~--~~~~~~~v~~~~~-~~~~~~~~~------~~~~~~~p~evla~~~~vs~~~~~~l~~~~--~~i 201 (385)
T 1j58_A 133 YFPSGLPHSIQALE--EGAEFLLVFDDGS-FSENSTFQL------TDWLAHTPKEVIAANFGVTKEEISNLPGKE--KYI 201 (385)
T ss_dssp EECTTCCEEEEEEE--EEEEEEEEESCTT-CCGGGEEEH------HHHHHTSCHHHHHHHHTCCTGGGTTSCSSC--CSE
T ss_pred EECCCCeEEEEECC--CCEEEEEEECCCC-ccccchhhh------hhhhhcccHHHHHHHhCCCHHHHHhccccc--ceE
Confidence 99999999999986 3588888885544 333444554 389999999999999999999999987754 356
Q ss_pred EEccc-hhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccc
Q 040805 312 VKASK-QQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPF 390 (540)
Q Consensus 312 v~~~~-e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH 390 (540)
+.... ..+. .... .+ ..........|++....| +.+.+|.++.+.+.+++... ++++..++|.||++..||
T Consensus 202 ~~~~~p~~l~-~~~~---~~-~~~~~~~~~v~~~~~~~~-~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h 273 (385)
T 1j58_A 202 FENQLPGSLK-DDIV---EG-PNGEVPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELH 273 (385)
T ss_dssp ECCCCCCCHH-HHCC---CC-TTCCCSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEE
T ss_pred eccCCCCccc-cccc---cC-CCCCCCCCeeeecccCCC-eeCCCceEEEeecccCCccc--ceEEEEEEECCCcccCce
Confidence 54311 0010 0000 00 001112345788888888 56778999999988888654 689999999999999999
Q ss_pred ccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805 391 YNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV 470 (540)
Q Consensus 391 ~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~ 470 (540)
||+.+.+++||++|++++.+.++++. .....|++||+++||+|.+|++.|.+++++.+
T Consensus 274 ~H~~~~E~~~Vl~G~~~~~i~~~~g~----------------------~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~ 331 (385)
T 1j58_A 274 WHPNTHEWQYYISGKARMTVFASDGH----------------------ARTFNYQAGDVGYVPFAMGHYVENIGDEPLVF 331 (385)
T ss_dssp ECSSSCEEEEEEESEEEEEEEEETTE----------------------EEEEEEESSCEEEECTTCBEEEEECSSSCEEE
T ss_pred eCCCCCEEEEEEeCeEEEEEEcCCCc----------------------EEEEEEcCCCEEEECCCCeEEEEECCCCCEEE
Confidence 99998999999999999999877651 12357999999999999999999988889999
Q ss_pred EEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCC
Q 040805 471 VCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQ 518 (540)
Q Consensus 471 v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q 518 (540)
+++...+. ... .+..++|..+|+++++++|+++.+++++|++.+
T Consensus 332 l~v~~~~~-~~d---~~~~~~l~~~~~~v~~~~f~~~~~~~~~l~~~~ 375 (385)
T 1j58_A 332 LEIFKDDH-YAD---VSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEK 375 (385)
T ss_dssp EEEESSSS-CCC---EEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSC
T ss_pred EEEECCCC-ccc---cCHHHHHHhCCHHHHHHHhCCCHHHHHhhhccC
Confidence 88765542 111 122578899999999999999999999999654
No 16
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=100.00 E-value=2.9e-35 Score=279.57 Aligned_cols=171 Identities=29% Similarity=0.578 Sum_probs=159.7
Q ss_pred cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805 145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN 224 (540)
Q Consensus 145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~ 224 (540)
+..+|++++++++|+++++++|+.++++|+|+..+.++.++++||++.+|||++++||+||++|+++++++++++..++.
T Consensus 7 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~ 86 (178)
T 1dgw_A 7 RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK 86 (178)
T ss_dssp CGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEE
T ss_pred chhhcccceEcCCCEEEEEcccCCcchhcCCcCcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEE
Confidence 35678899999999999999999988999998888899999999999999988999999999999999999999888999
Q ss_pred eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHh-
Q 040805 225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL- 303 (540)
Q Consensus 225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~- 303 (540)
|++||+|+||+|++||+.|++++++|+++++++++++||.+..|||+|+.++.+||++||++||++||+++.+++++|+
T Consensus 87 l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~~p~~vla~af~v~~~~~~~l~~ 166 (178)
T 1dgw_A 87 LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLL 166 (178)
T ss_dssp EETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred ECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhhCCHHHHHHHHCcCHHHHHHHhc
Confidence 9999999999999999999985558999999999999999999999999888899999999999999999999999999
Q ss_pred ccCCCCcEEEcc
Q 040805 304 FQQDQGAMVKAS 315 (540)
Q Consensus 304 ~~q~~g~Iv~~~ 315 (540)
+.|.+|.||++|
T Consensus 167 ~~~~~~~iv~~~ 178 (178)
T 1dgw_A 167 QEEQEGVIVKMP 178 (178)
T ss_dssp SCCSSSSEEECC
T ss_pred CcCcCceEEEcC
Confidence 556789999985
No 17
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=99.96 E-value=1.5e-29 Score=273.06 Aligned_cols=178 Identities=22% Similarity=0.339 Sum_probs=142.1
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~ 418 (540)
+|....| .+.+++|.+..|+ .++|+|+++||++++++|.||||++|||| +|++|+||++|+|.++||+|+++. +
T Consensus 14 ~L~a~eP~~~~~se~G~~e~~~-~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~ 91 (496)
T 3ksc_A 14 RLDALEPDNRIESEGGLIETWN-PNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFE 91 (496)
T ss_dssp CCCCBCCSEEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred cCCcCCCccccCCCCcEEEecc-ccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccch
Confidence 4555555 6889999998887 67899999999999999999999999999 999999999999999999998653 1
Q ss_pred cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecCCCC------cccccccc---
Q 040805 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINAEGN------IRFPLAGR--- 488 (540)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a~~~------~~~~LAG~--- 488 (540)
++++..+ ++. ++....|+++ .+|++||||+||+|++||++|+|+++|++|+ |++++..| ..+||||+
T Consensus 92 ~~~~~~~-~~~-~~~~d~~qk~-~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~ 168 (496)
T 3ksc_A 92 EPQESEQ-GEG-RRYRDRHQKV-NRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQ 168 (496)
T ss_dssp ---------------CCCCCCE-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCC
T ss_pred hhhhccc-ccc-cccccchhee-eccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCcc
Confidence 1111111 111 1223446776 4999999999999999999999999999987 67766444 48999998
Q ss_pred -------------------ccccccCCHHHHHHHcCCCHHHHHHhh---cCCCCceEEc
Q 040805 489 -------------------NKIFKVMESEAKELAFNTRADEVERVF---GNQDQDWFFK 525 (540)
Q Consensus 489 -------------------~svl~~~~~evla~AF~vs~e~v~kl~---~~q~e~~f~~ 525 (540)
+|||++|++++|+.||||+.++|++|+ .++....||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~ 227 (496)
T 3ksc_A 169 EFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVK 227 (496)
T ss_dssp TTGGGCC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEE
T ss_pred ccccccccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEE
Confidence 699999999999999999999999999 4444456663
No 18
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=99.95 E-value=8.9e-28 Score=257.56 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=144.6
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS-- 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~-- 418 (540)
+|....| .+.+++|.+..|++.+ |.|+++||++++++|.|||+++||||+ |++|+||++|+|.++||+|+|+..
T Consensus 11 ~l~a~ep~~~~~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~ 88 (466)
T 3kgl_A 11 QLNALEPSHVLKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQ 88 (466)
T ss_dssp CCCCBCCSEEEEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEE
T ss_pred cCCCCCCcceeeCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhh
Confidence 3444445 6889999999999766 999999999999999999999999995 999999999999999999998741
Q ss_pred c---cccc--------------ccC---C-Cc---------------cccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 419 S---SERR--------------HQG---S-ST---------------REEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 419 ~---~~~~--------------~~~---~-~~---------------~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
+ ++++ +++ + ++ .+...+.++++ .+|++|||++||+|++||++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv-~~l~~GDvi~iPaG~~~~~~N 167 (466)
T 3kgl_A 89 DSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKV-EHIRTGDTIATHPGVAQWFYN 167 (466)
T ss_dssp ECCSSCCCC-----------------------------------------CCEEESCE-EEEETTEEEEECTTCEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccceee-ccccCCCEEEECCCCcEEEEe
Confidence 0 0000 000 0 00 01122446677 599999999999999999999
Q ss_pred cCCCCEEEEEEE-ecCCC------Cccccccccc----------------cccccCCHHHHHHHcCCCHHHHHHhhcCCC
Q 040805 463 SQNNNLEVVCFE-INAEG------NIRFPLAGRN----------------KIFKVMESEAKELAFNTRADEVERVFGNQD 519 (540)
Q Consensus 463 ~~~e~l~~v~F~-~~a~~------~~~~~LAG~~----------------svl~~~~~evla~AF~vs~e~v~kl~~~q~ 519 (540)
+++++|++|++. +++.. +..|||||+. |||++|++++|+.||||+.+++++|+..|+
T Consensus 168 ~g~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~ 247 (466)
T 3kgl_A 168 DGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQD 247 (466)
T ss_dssp CSSSCEEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTC
T ss_pred CCCCcEEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhcccc
Confidence 999999999874 43322 3679999986 999999999999999999999999998876
Q ss_pred -CceEEcCC
Q 040805 520 -QDWFFKGP 527 (540)
Q Consensus 520 -e~~f~~~~ 527 (540)
...|+...
T Consensus 248 ~~G~Iv~v~ 256 (466)
T 3kgl_A 248 NRGNIIRVQ 256 (466)
T ss_dssp CSCSEEECC
T ss_pred CceeEEEec
Confidence 45777653
No 19
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=99.95 E-value=3.2e-27 Score=224.25 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=138.7
Q ss_pred CceeEcCCCCCcccCCCceEEEecC-----CCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC
Q 040805 339 RGTFNLFGKRPSHSNNFGELFEADS-----NDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP 413 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G~~~~~~~-----~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p 413 (540)
++.|++.+.++.|.+++|+++.+++ ..+|.|+ ++++.+++|.|||+..|| |++|++|+||++|+++++++++
T Consensus 3 p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~ 79 (178)
T 1dgw_A 3 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP 79 (178)
T ss_dssp TTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred CceechhhcccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeC
Confidence 5689999998989999999999776 3355554 699999999999999999 8999999999999999999998
Q ss_pred CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC-CEEEEEEEecCCCCc---ccccccc-
Q 040805 414 HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN-NLEVVCFEINAEGNI---RFPLAGR- 488 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e-~l~~v~F~~~a~~~~---~~~LAG~- 488 (540)
++. + ...|++||+++||+|.+||+.|.+++ ++.++++..+++++. .++|||+
T Consensus 80 ~~~---------------------~--~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~ 136 (178)
T 1dgw_A 80 DGR---------------------D--TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 136 (178)
T ss_dssp TEE---------------------E--EEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCS
T ss_pred CCc---------------------E--EEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCc
Confidence 651 2 35899999999999999999998775 799988755554553 7789998
Q ss_pred --ccccccCCHHHHHHHcCCCHHHHHHhh-cCCCCceEEc
Q 040805 489 --NKIFKVMESEAKELAFNTRADEVERVF-GNQDQDWFFK 525 (540)
Q Consensus 489 --~svl~~~~~evla~AF~vs~e~v~kl~-~~q~e~~f~~ 525 (540)
++||+++|++||++||+++.+++++|+ ..|++..|+.
T Consensus 137 ~~~~~~~~~p~~vla~af~v~~~~~~~l~~~~~~~~~iv~ 176 (178)
T 1dgw_A 137 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVK 176 (178)
T ss_dssp SCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEE
T ss_pred CcchhhhhCCHHHHHHHHCcCHHHHHHHhcCcCcCceEEE
Confidence 799999999999999999999999999 5556677875
No 20
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=99.95 E-value=1.8e-27 Score=255.13 Aligned_cols=180 Identities=17% Similarity=0.239 Sum_probs=140.8
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~ 418 (540)
+|....| .+.+++|.+..|++. .+.|+|+||++++++|.||||++|||| +|++|+||++|+|+++||.|+|+. +
T Consensus 18 ~l~a~eP~~~i~se~G~~e~~d~~-~~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~ 95 (465)
T 3qac_A 18 RLTALEPTNRIQAERGLTEVWDSN-EQEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYE 95 (465)
T ss_dssp CCCCBCCCEEEEETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC-
T ss_pred cCCCCCCccceeCCCcEEEEECCC-ChhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceee
Confidence 5556666 478999999999855 478999999999999999999999999 999999999999999999998752 1
Q ss_pred cccc------------cccC---CCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC----
Q 040805 419 SSER------------RHQG---SSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE---- 478 (540)
Q Consensus 419 ~~~~------------~~~~---~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~---- 478 (540)
++.+ ++++ ++.++.. +.++++ .+|++||||+||+|++||++|+|+++|++|++ ++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~hqk~-~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nql 173 (465)
T 3qac_A 96 SGSQQFQGGEDERIREQGSRKFGMRGDRFQ-DQHQKI-RHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQL 173 (465)
T ss_dssp -----------------------------C-CCCCCE-EEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCS
T ss_pred cchhcccccccccccccccccccccccccc-ccccce-eeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCccccc
Confidence 1100 0000 0111112 233554 78999999999999999999999999999875 44331
Q ss_pred ---CCcccccccc----------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCCC-ceEEcC
Q 040805 479 ---GNIRFPLAGR----------------------NKIFKVMESEAKELAFNTRADEVERVFGNQDQ-DWFFKG 526 (540)
Q Consensus 479 ---~~~~~~LAG~----------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~e-~~f~~~ 526 (540)
++..+||||+ +|||++|++++|+.||||+.+++++|+..|++ ..|+..
T Consensus 174 d~~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv 247 (465)
T 3qac_A 174 DKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV 247 (465)
T ss_dssp CSSSCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC
T ss_pred ccccceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEe
Confidence 3467999997 58999999999999999999999999988763 467643
No 21
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=99.94 E-value=5e-27 Score=254.44 Aligned_cols=183 Identities=19% Similarity=0.292 Sum_probs=142.5
Q ss_pred ceeEcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805 340 GTFNLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR 417 (540)
Q Consensus 340 ~~fnL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~ 417 (540)
..++|....| .|.+++|.+..|+. +.|+|+++||++++++|.||||++|||| ++++|+||++|+|+++||+|+|+.
T Consensus 10 ~~~~L~a~~P~~~~~se~G~~e~~~~-~~~~l~~~gv~~~r~~i~pggl~~Ph~~-~~~~i~yV~~G~g~vg~v~pgc~e 87 (493)
T 2d5f_A 10 QLNNLNALEPDHRVESEGGLIETWNS-QHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPE 87 (493)
T ss_dssp CCSCCCCBCCCEEEECSSEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCC
T ss_pred CcccCCCCCCcceeecCCcEEEEeCC-CChhhccCCEEEEEEEeCCCcEeCceec-CCCeEEEEEeCEEEEEEEeCCCcc
Confidence 3678888888 58899999877774 5599999999999999999999999998 588999999999999999999862
Q ss_pred --Ccccccc-cCCC-ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCCC------Ccccccc
Q 040805 418 --SSSERRH-QGSS-TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAEG------NIRFPLA 486 (540)
Q Consensus 418 --~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~~------~~~~~LA 486 (540)
+++...+ ++++ ++++..+.++++ .+|++||||+||+|++||++|+++++|++|++ ++++.. +..+|||
T Consensus 88 t~~~~~~~~~~~~~~~~~~~~d~~qkv-~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~La 166 (493)
T 2d5f_A 88 TFEKPQQQSSRRGSRSQQQLQDSHQKI-RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLA 166 (493)
T ss_dssp CEEECC-------------CSEEESCE-EEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESS
T ss_pred ccccccccccccccccccccccccceE-EEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeecc
Confidence 1110000 0000 000011222344 48999999999999999999999999999986 433322 3688999
Q ss_pred cc---------------------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEEc
Q 040805 487 GR---------------------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFFK 525 (540)
Q Consensus 487 G~---------------------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~~ 525 (540)
|+ +|||++|++++|+.||+|+.++|++|+..++ ..+||.
T Consensus 167 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~ 239 (493)
T 2d5f_A 167 GNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT 239 (493)
T ss_dssp SCCCCSCGGGTC---------------------CCCCGGGGSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred CCccccchhhhhhcccccccccccccccccccccccchhhcCCHHHHHhHhCCCHHHHHHhhhcccCcccEEE
Confidence 84 4899999999999999999999999998876 356775
No 22
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=99.94 E-value=5.4e-27 Score=253.08 Aligned_cols=179 Identities=17% Similarity=0.304 Sum_probs=140.6
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~ 418 (540)
+|....| .+.+++|.+..|+ .++|.|+++||++++++|.||||++||||+ |++|+||++|++.++||.|+|+. +
T Consensus 16 ~l~a~eP~~~i~se~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~ 93 (531)
T 3fz3_A 16 QLQAREPDNRIQAEAGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFE 93 (531)
T ss_dssp CCCCBCCCEEEEETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred ccCcCCCchhcccCCceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCccccc
Confidence 4445555 5889999999998 468999999999999999999999999995 99999999999999999999984 0
Q ss_pred c-c--c---------------c-------ccc----------C---C------------------CccccCC--ccceEE
Q 040805 419 S-S--E---------------R-------RHQ----------G---S------------------STREEGS--ATYHKV 440 (540)
Q Consensus 419 ~-~--~---------------~-------~~~----------~---~------------------~~~~~~~--~~~~~~ 440 (540)
+ . . + .++ . + +..+... +.++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv 173 (531)
T 3fz3_A 94 ESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKT 173 (531)
T ss_dssp CCCC-------------------------------------------------------------------CCSCEESCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceee
Confidence 0 0 0 0 000 0 0 0000011 344566
Q ss_pred eeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------CCcccccccc-------------------------
Q 040805 441 SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------GNIRFPLAGR------------------------- 488 (540)
Q Consensus 441 ~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~~~~~~LAG~------------------------- 488 (540)
.+|++|||++||+|.+||++|+++++|++|++ |+++. ++..|||||+
T Consensus 174 -~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (531)
T 3fz3_A 174 -RRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQH 252 (531)
T ss_dssp -EEEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC------------------
T ss_pred -ecccCCcEEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccc
Confidence 58999999999999999999999999999985 65442 2468999997
Q ss_pred ----------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEE
Q 040805 489 ----------------NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFF 524 (540)
Q Consensus 489 ----------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~ 524 (540)
+|||++|+.++|+.||||+.+++++|+..++ ...||
T Consensus 253 ~~~~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IV 305 (531)
T 3fz3_A 253 QQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQII 305 (531)
T ss_dssp --------------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEE
T ss_pred cccccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEE
Confidence 3899999999999999999999999998765 34555
No 23
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=99.94 E-value=1.3e-26 Score=249.24 Aligned_cols=179 Identities=22% Similarity=0.275 Sum_probs=140.6
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~ 418 (540)
+|....| .+.+++|.+..++. +.|.|+++|+++++++|.|||+++|||| +|++|+||++|+|++++|+|+|+. +
T Consensus 31 ~l~a~eP~~~v~se~G~~~~~~~-~~~~l~~~gvs~~r~~i~pggl~~Ph~h-~a~ei~yVl~G~g~vg~v~p~~~~tf~ 108 (459)
T 2e9q_A 31 NLRAQDPVRRAEAEAGFTEVWDQ-DNDEFQCAGVNMIRHTIRPKGLLLPGFS-NAPKLIFVAQGFGIRGIAIPGCAETYQ 108 (459)
T ss_dssp SCCCBCCCEEEEETTEEEEECCT-TSHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred cCCcCCCCceEecCCcEEEecCC-CChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEeeEEEEEEEeCCCcchhc
Confidence 5666667 48899999988775 4599999999999999999999999998 699999999999999999998752 0
Q ss_pred ccc-ccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecC--CC-----Ccccccccc--
Q 040805 419 SSE-RRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA--EG-----NIRFPLAGR-- 488 (540)
Q Consensus 419 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a--~~-----~~~~~LAG~-- 488 (540)
++. +.++++++ ..+. +....+|++||||+||+|++||++|.++++|++|++..++ .+ +..++|||.
T Consensus 109 ~~~~~~~~~~~~--~~d~--~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~ 184 (459)
T 2e9q_A 109 TDLRRSQSAGSA--FKDQ--HQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPE 184 (459)
T ss_dssp ECCC-------C--CCEE--ECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCC
T ss_pred cchhhccccccc--cccc--cceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCcc
Confidence 100 00000001 1111 1223589999999999999999999999999999864433 12 568899985
Q ss_pred ----------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEEcCC
Q 040805 489 ----------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFFKGP 527 (540)
Q Consensus 489 ----------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~~~~ 527 (540)
+|||++||++||+.||+|+.++|++|+..++ ..+||+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~ 246 (459)
T 2e9q_A 185 QVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVD 246 (459)
T ss_dssp CCSSTTCC------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECC
T ss_pred ccchhhhccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeC
Confidence 3899999999999999999999999998876 34888754
No 24
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=99.93 E-value=1.2e-25 Score=242.82 Aligned_cols=181 Identities=17% Similarity=0.256 Sum_probs=136.6
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~ 418 (540)
+|....| .+.+++|.+..|+.. .|.|+++||++++++|.|||+++|||| +|++|+||++|+|++++|.|+|+. +
T Consensus 16 ~l~a~~P~~~v~se~G~~e~~~~~-~~~l~~~gvs~~r~~l~Pggl~~Ph~~-~a~ei~yV~~G~g~~g~v~pg~~et~~ 93 (476)
T 1fxz_A 16 KLNALKPDNRIESEGGLIETWNPN-NKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFE 93 (476)
T ss_dssp CCCCBCCSCEEEETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred cCCCCCCceEEecCCceEEeeCCC-ChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEecEEEEEEEcCCCcchhh
Confidence 3444455 588999999888855 599999999999999999999999997 599999999999999999998862 1
Q ss_pred cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------CCcccccccc---
Q 040805 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------GNIRFPLAGR--- 488 (540)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~~~~~~LAG~--- 488 (540)
++....++++.++..+. .+++ .+|++||||+||+|.+||++|.++++|++|++ ++++. .+..|+|||+
T Consensus 94 ~~~~~~~~~~~~~~~d~-~qk~-~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~ 171 (476)
T 1fxz_A 94 EPQQPQQRGQSSRPQDR-HQKI-YNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQ 171 (476)
T ss_dssp ----------------C-CCCE-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCC
T ss_pred ccccccccccccccccc-cceE-EEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCccc
Confidence 11000000000011111 1223 58999999999999999999999999999875 43331 2468889984
Q ss_pred ---------------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC---CceEEcCC
Q 040805 489 ---------------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD---QDWFFKGP 527 (540)
Q Consensus 489 ---------------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~---e~~f~~~~ 527 (540)
+|||++||++||+.||+|+.++|++|+..++ ..+||+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~ 240 (476)
T 1fxz_A 172 EFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK 240 (476)
T ss_dssp TTHHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECS
T ss_pred cccccccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeC
Confidence 3899999999999999999999999998776 45788744
No 25
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=99.93 E-value=1.6e-25 Score=242.57 Aligned_cols=181 Identities=21% Similarity=0.336 Sum_probs=137.9
Q ss_pred EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--
Q 040805 343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS-- 418 (540)
Q Consensus 343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~-- 418 (540)
+|....| .+.+++|.+..|++.+ |.|+|+||++++++|.|||+++|||| +|++|+||++|+|+++||.|+|+..
T Consensus 16 ~l~a~~p~~~~~se~G~~e~~~~~~-~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~~~~yV~~G~g~~g~v~pg~~et~~ 93 (510)
T 3c3v_A 16 RLNAQRPDNRIESEGGYIETWNPNN-QEFECAGVALSRLVLRRNALRRPFYS-NAPQEIFIQQGRGYFGLIFPGCPSTYE 93 (510)
T ss_dssp CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECCEEEEEECTTCCCCEE
T ss_pred cCCCCCchhhhccCCceEEEeCCCC-cccccCcEEEEEEEECCCCCccceec-CCCeEEEEEeCEEEEEEEeCCCccccc
Confidence 4445555 6889999998887554 99999999999999999999999997 6999999999999999999988521
Q ss_pred ---------cccccccCCCccccC---CccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------C
Q 040805 419 ---------SSERRHQGSSTREEG---SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------G 479 (540)
Q Consensus 419 ---------~~~~~~~~~~~~~~~---~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~ 479 (540)
.+.+++++.+++++. .+.++++ .+|++||||+||+|++||++|.++++|++|++ ++++. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv-~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~ 172 (510)
T 3c3v_A 94 EPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKV-HRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQF 172 (510)
T ss_dssp EECCC--------------------CEEEEESCC-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSC
T ss_pred cccccccccccccccccccccccccccccccceE-EEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccc
Confidence 000111111111110 1122333 58999999999999999999999999999875 44331 1
Q ss_pred Ccccccccc----------------------------------------------------------ccccccCCHHHHH
Q 040805 480 NIRFPLAGR----------------------------------------------------------NKIFKVMESEAKE 501 (540)
Q Consensus 480 ~~~~~LAG~----------------------------------------------------------~svl~~~~~evla 501 (540)
+..|||||+ +|||++|++++|+
T Consensus 173 ~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La 252 (510)
T 3c3v_A 173 PRRFNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLA 252 (510)
T ss_dssp CCCEESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHH
T ss_pred cceeEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHH
Confidence 467889982 3799999999999
Q ss_pred HHcCCC-HHHHHHhhcCCC---CceEEcC
Q 040805 502 LAFNTR-ADEVERVFGNQD---QDWFFKG 526 (540)
Q Consensus 502 ~AF~vs-~e~v~kl~~~q~---e~~f~~~ 526 (540)
.||||+ .+++++|+..++ ..+||..
T Consensus 253 ~af~v~~~~~~~~l~~~~~~~~~g~Iv~v 281 (510)
T 3c3v_A 253 QAFQVDDRQIVQNLRGENESEEQGAIVTV 281 (510)
T ss_dssp HHHTCCCHHHHHHHTTTTCCTTSCSEEEC
T ss_pred HHhCCCHHHHHHHhhccccccccccEEEe
Confidence 999999 999999998776 4577765
No 26
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=99.92 E-value=1e-24 Score=230.66 Aligned_cols=166 Identities=16% Similarity=0.202 Sum_probs=139.3
Q ss_pred CceeEcCC-CCCcccCCCceEEEec--CCCCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805 339 RGTFNLFG-KRPSHSNNFGELFEAD--SNDFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 339 ~~~fnL~~-~~P~~~n~~G~~~~~~--~~~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~ 414 (540)
++.|+..+ .++.|.+++|.+..++ ..++|.|++++ +++++++|.|||+++|||| +|++|+||++|+|++++|.++
T Consensus 13 p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~~~ 91 (397)
T 2phl_A 13 PFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPD 91 (397)
T ss_dssp TTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETT
T ss_pred CcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEeCC
Confidence 34555555 4578999999999972 24568999997 9999999999999999997 999999999999999999997
Q ss_pred CCCCcccccccCCCccccCCccceEEeeeeCCCcE------EEECCCCeEEEEecC-CCCEEEEEEEecCC--CCccccc
Q 040805 415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA------YIVPAGHPVVTVASQ-NNNLEVVCFEINAE--GNIRFPL 485 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV------~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~--~~~~~~L 485 (540)
+ + ....|++||| ++||+|.+||++|.+ +++|.++++...++ ....++|
T Consensus 92 ~----------------------~-~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L 148 (397)
T 2phl_A 92 D----------------------R-REYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFL 148 (397)
T ss_dssp T----------------------E-EEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEEC
T ss_pred C----------------------c-EEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeec
Confidence 5 2 2468999999 999999999999987 78999998643332 2346889
Q ss_pred ccc---ccccccCCHHHHHHHcCCCHHHHHHhhcCC---CCceEEcCCC
Q 040805 486 AGR---NKIFKVMESEAKELAFNTRADEVERVFGNQ---DQDWFFKGPS 528 (540)
Q Consensus 486 AG~---~svl~~~~~evla~AF~vs~e~v~kl~~~q---~e~~f~~~~~ 528 (540)
+|. .|||++||++||++||+++.+++++|+.++ ++.+|++.+.
T Consensus 149 ~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~ 197 (397)
T 2phl_A 149 SSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDS 197 (397)
T ss_dssp CCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCT
T ss_pred cCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCc
Confidence 985 579999999999999999999999999544 3578888775
No 27
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=99.92 E-value=1.9e-24 Score=229.99 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=131.1
Q ss_pred CceeEcCCCCCcccCCCceEEEecCC--CCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805 339 RGTFNLFGKRPSHSNNFGELFEADSN--DFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G~~~~~~~~--~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~ 415 (540)
++.|...+-++.|.+++|.+..|... +.|+|.+| ++++++++|.|||+++|| |++|++|+||++|+|++++|.|++
T Consensus 6 p~~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~~~ 84 (418)
T 3s7i_A 6 PFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNN 84 (418)
T ss_dssp TTEECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSC
T ss_pred CcccccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEecCC
Confidence 44555555557899999999999753 35788874 799999999999999999 599999999999999999999965
Q ss_pred CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEEEecCCCC---ccccccccc--
Q 040805 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCFEINAEGN---IRFPLAGRN-- 489 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F~~~a~~~---~~~~LAG~~-- 489 (540)
....+|++||||+||+|++||++|. +++.|.|++|.++++++ ..++|||..
T Consensus 85 -----------------------~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~ 141 (418)
T 3s7i_A 85 -----------------------RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQ 141 (418)
T ss_dssp -----------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSC
T ss_pred -----------------------EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcch
Confidence 2346899999999999999999995 45689999875555444 567789874
Q ss_pred -cccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 490 -KIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 490 -svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
++|++||++||++||+++.++|++|+..
T Consensus 142 ~s~~~gf~~evLa~af~v~~~~v~kl~~~ 170 (418)
T 3s7i_A 142 SSYLQGFSRNTLEAAFNAEFNEIRRVLLE 170 (418)
T ss_dssp CCGGGGSCHHHHHHHHTSCHHHHHHHTTS
T ss_pred hHHhhcCCHHHHHHHHCcCHHHHHhhhcc
Confidence 7999999999999999999999999954
No 28
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=99.91 E-value=1.3e-23 Score=224.92 Aligned_cols=166 Identities=18% Similarity=0.277 Sum_probs=138.4
Q ss_pred CceeEcCC-CCCcccCCCceEEEecC--CCCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805 339 RGTFNLFG-KRPSHSNNFGELFEADS--NDFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 339 ~~~fnL~~-~~P~~~n~~G~~~~~~~--~~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~ 414 (540)
++.|++.+ .++.+.+++|++..++. .++|.|++++ +++++++|.|||++.|| |++|++|+||++|+|++++++++
T Consensus 22 p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~ 100 (434)
T 2ea7_A 22 PFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPD 100 (434)
T ss_dssp TTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSS
T ss_pred CeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCC
Confidence 34555555 45889999999999743 5668999997 99999999999999999 68999999999999999999985
Q ss_pred CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCC---cccccccc--
Q 040805 415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGN---IRFPLAGR-- 488 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~---~~~~LAG~-- 488 (540)
+ .....|++|||++||+|.+||++|.+ +++|+++++..+++++ ..++|+|+
T Consensus 101 ~-----------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~ 157 (434)
T 2ea7_A 101 S-----------------------RDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEA 157 (434)
T ss_dssp C-----------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSS
T ss_pred C-----------------------CEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcc
Confidence 4 23458999999999999999999987 7899999874433333 45678886
Q ss_pred -ccccccCCHHHHHHHcCCCHHHHHHhh-cCC----------CCceEEcCCC
Q 040805 489 -NKIFKVMESEAKELAFNTRADEVERVF-GNQ----------DQDWFFKGPS 528 (540)
Q Consensus 489 -~svl~~~~~evla~AF~vs~e~v~kl~-~~q----------~e~~f~~~~~ 528 (540)
.|||++||++||++||+++.+++++|+ ..+ ++.+|++.++
T Consensus 158 ~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~ 209 (434)
T 2ea7_A 158 QQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKR 209 (434)
T ss_dssp CCCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------CCCSSSEEECCH
T ss_pred hhhhhhcCCHHHHHHHhCCCHHHHHhhhhcccccccccccccccceEEECCc
Confidence 369999999999999999999999999 543 4679998754
No 29
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=99.90 E-value=4.5e-23 Score=221.31 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=139.7
Q ss_pred CceeEcCCCCCcccCCCceEEEecCC--CCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805 339 RGTFNLFGKRPSHSNNFGELFEADSN--DFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G~~~~~~~~--~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~ 415 (540)
++.|+..+.++.+.+.+|++..++.. ++|.|++++ +++++++|.|||++.|| |+++++|.||++|+++++++++++
T Consensus 48 p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~ 126 (445)
T 2cav_A 48 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG 126 (445)
T ss_dssp TTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTE
T ss_pred CeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCC
Confidence 45666666556788899999998653 456899887 99999999999999999 689999999999999999999865
Q ss_pred CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCC---ccccccccc--
Q 040805 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGN---IRFPLAGRN-- 489 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~---~~~~LAG~~-- 489 (540)
. ....|++|||++||+|.+||++|.+ +++|+++++.+.++++ ..++|||..
T Consensus 127 ----------------------~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~ 183 (445)
T 2cav_A 127 ----------------------R-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRL 183 (445)
T ss_dssp ----------------------E-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSC
T ss_pred ----------------------C-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCch
Confidence 2 3468999999999999999999997 7899999865444333 366789873
Q ss_pred -cccccCCHHHHHHHcCCCHHHHHHhhc-CCCCceEEcCCC
Q 040805 490 -KIFKVMESEAKELAFNTRADEVERVFG-NQDQDWFFKGPS 528 (540)
Q Consensus 490 -svl~~~~~evla~AF~vs~e~v~kl~~-~q~e~~f~~~~~ 528 (540)
+||++||++||++||+++.+++++|+. .++..+|++.++
T Consensus 184 ~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~ 224 (445)
T 2cav_A 184 PSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPK 224 (445)
T ss_dssp CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCC
T ss_pred hhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCC
Confidence 899999999999999999999999995 445679998775
No 30
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=99.89 E-value=4.3e-23 Score=219.92 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=137.3
Q ss_pred CceeE-cCCCCCcccCCCceEEEecC--CCCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805 339 RGTFN-LFGKRPSHSNNFGELFEADS--NDFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 339 ~~~fn-L~~~~P~~~n~~G~~~~~~~--~~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~ 414 (540)
++.|+ ..+.++.+.+++|++..++. .+.|.|.+++ +++++++|.|||++.|| |++|++|.||++|+|++++|+++
T Consensus 10 p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~ 88 (416)
T 1uij_A 10 PFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNND 88 (416)
T ss_dssp TTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSS
T ss_pred CeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECC
Confidence 34454 44455689999999999744 3458899987 99999999999999999 68999999999999999999994
Q ss_pred CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEEEecCCC---Cccccccccc-
Q 040805 415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCFEINAEG---NIRFPLAGRN- 489 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F~~~a~~---~~~~~LAG~~- 489 (540)
+ .....|++|||++||+|.+||++|. ++++|+++++...+++ ...++|+|..
T Consensus 89 ~-----------------------~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~ 145 (416)
T 1uij_A 89 D-----------------------RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQA 145 (416)
T ss_dssp C-----------------------EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSS
T ss_pred C-----------------------CeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcc
Confidence 3 2346899999999999999999998 4899999987543323 2456788864
Q ss_pred --cccccCCHHHHHHHcCCCHHHHHHhh-cCC-----CCceEEcCCC
Q 040805 490 --KIFKVMESEAKELAFNTRADEVERVF-GNQ-----DQDWFFKGPS 528 (540)
Q Consensus 490 --svl~~~~~evla~AF~vs~e~v~kl~-~~q-----~e~~f~~~~~ 528 (540)
|||++||++||++||+++.+++++|+ ..+ ...+|++..+
T Consensus 146 ~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~ 192 (416)
T 1uij_A 146 QQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSK 192 (416)
T ss_dssp CCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCH
T ss_pred cchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCC
Confidence 69999999999999999999999999 665 2478998764
No 31
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=99.89 E-value=3.4e-22 Score=192.81 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=133.2
Q ss_pred CceeEc-CCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805 339 RGTFNL-FGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS 416 (540)
Q Consensus 339 ~~~fnL-~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~ 416 (540)
.+.|++ ..+++.++|..| .++.++..++|.|+++++++.+++|.||++..||||++++||+||++|+++++++++...
T Consensus 35 df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~ 114 (201)
T 1fi2_A 35 DFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDS 114 (201)
T ss_dssp CTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGG
T ss_pred ceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCC
Confidence 457887 667776677656 689999999999999999999999999999999999999999999999999999976400
Q ss_pred CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcccccccccccccc--
Q 040805 417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKV-- 494 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~-- 494 (540)
+ .+.+...|++||+++||+|.+|++.|.+++++.++++... .++....++ .++|..
T Consensus 115 -------~------------~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~-~~p~~~~~~--~~~~~~~~ 172 (201)
T 1fi2_A 115 -------G------------NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNS-QNPGIVFVP--LTLFGSDP 172 (201)
T ss_dssp -------T------------TCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESS-SCCCCEEHH--HHHHHCSS
T ss_pred -------C------------CeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECC-CCCCeEehh--hHHhcCCC
Confidence 0 0455678999999999999999999988889999887544 356666676 468886
Q ss_pred -CCHHHHHHHcCCCHHHHHHhhcC
Q 040805 495 -MESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 495 -~~~evla~AF~vs~e~v~kl~~~ 517 (540)
|+++||+++|+++.+++++|++.
T Consensus 173 ~~~~~vl~~af~~~~~~v~~l~~~ 196 (201)
T 1fi2_A 173 PIPTPVLTKALRVEAGVVELLKSK 196 (201)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99999999999999999999864
No 32
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=99.88 E-value=1.8e-22 Score=171.52 Aligned_cols=90 Identities=26% Similarity=0.513 Sum_probs=86.4
Q ss_pred cceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHh
Q 040805 436 TYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERV 514 (540)
Q Consensus 436 ~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl 514 (540)
+|++++.+|++|||||||+|||++++|++ +|+||+|.||+++|+++|||| ++|||++||.+||++||+++.+++++|
T Consensus 2 ~~~~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~~~l 79 (93)
T 1dgw_Y 2 QLRRYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEEL 79 (93)
T ss_dssp CEEEEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTTTSCHHHHHHHSSSCTHHHHHH
T ss_pred ccchhhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHHhCCHHHHHHHcCCCHHHHHHH
Confidence 48999999999999999999999999984 599999999999999999999 999999999999999999999999999
Q ss_pred hcCCCCceEEcCC
Q 040805 515 FGNQDQDWFFKGP 527 (540)
Q Consensus 515 ~~~q~e~~f~~~~ 527 (540)
+.+|++++|+++.
T Consensus 80 ~~~q~e~~~~~~~ 92 (93)
T 1dgw_Y 80 LENQKESYFVDGQ 92 (93)
T ss_dssp TTSCCCCSEECCC
T ss_pred HhcCCCceeccCC
Confidence 9999999999985
No 33
>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X
Probab=99.87 E-value=1.3e-22 Score=167.86 Aligned_cols=76 Identities=34% Similarity=0.552 Sum_probs=73.8
Q ss_pred ceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805 340 GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415 (540)
Q Consensus 340 ~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~ 415 (540)
+||||++++|+|+|.+|+++.+++.++|+|+++|||+++++|.||||+.|||||+|++|+||++|+++++||+|++
T Consensus 2 ~pfnl~~~~p~~~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g 77 (79)
T 1dgw_X 2 KPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ 77 (79)
T ss_dssp CCEETTSSCCSEECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred CccccccCCCCccCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999987
No 34
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=99.84 E-value=2.4e-20 Score=194.96 Aligned_cols=229 Identities=15% Similarity=0.145 Sum_probs=153.2
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.++++.+.||+...||+|...+++||++|++.++.|+ ...+.|++||+|+||+|++|++.|.+ +++++++++.
T Consensus 98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~---g~~~~l~~GD~~~iP~g~~H~~~n~~-~~~~~~l~v~ 173 (354)
T 2d40_A 98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD---GERTPMNEGDFILTPQWRWHDHGNPG-DEPVIWLDGL 173 (354)
T ss_dssp SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET---TEEEECCTTCEEEECTTSCEEEECCS-SSCEEEEEEE
T ss_pred CcEEEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEEC---CEEEEEcCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence 3466778899999999999999999999999999885553 36899999999999999999999998 5689998776
Q ss_pred ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805 257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG 336 (540)
Q Consensus 257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~ 336 (540)
++. .+.. |.. .+...++.+++.. ..+......++. +.++..... ... .+
T Consensus 174 d~p----~~~~--l~~-----~~~~~~~~~~~~~--~~p~~~~~~~~~----~~~~p~~~~-----~~~---~s------ 222 (354)
T 2d40_A 174 DLP----LVNI--LGC-----GFAEDYPEEQQPV--TRKEGDYLPRYA----ANMLPLRHQ-----TGN---SS------ 222 (354)
T ss_dssp CHH----HHHH--HTC-----CCEEECC--CCCC--CSCTTTHHHHHS----SSEECSSCC-----CCS---SC------
T ss_pred Cch----hHhh--cCc-----eeeecCccccCcC--cCCcchhhhhhc----cCCCCcccc-----ccC---CC------
Confidence 432 1111 100 1222334333211 112222222221 123322110 000 00
Q ss_pred CCCceeEcCC-----------CCCcccCCCceEEEecCC-CCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEec
Q 040805 337 ESRGTFNLFG-----------KRPSHSNNFGELFEADSN-DFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAG 404 (540)
Q Consensus 337 ~~~~~fnL~~-----------~~P~~~n~~G~~~~~~~~-~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G 404 (540)
....|+... ..+. ...++.+..+++. ..+.+.. |++..+.|.||++..||||+.+ +|.||++|
T Consensus 223 -p~~~y~~~~~~~~l~~~~~~~~~~-~~~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G 297 (354)
T 2d40_A 223 -PIFNYRYDRSREVLHDLTRLGDAD-EWDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTDS-TIYHVVEG 297 (354)
T ss_dssp -SCCEECHHHHHHHHHHHHTTSCCB-TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESSC-EEEEEEEE
T ss_pred -cceeccHHHHHHHHHhhhhccccC-CCCCeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCCc-EEEEEEeC
Confidence 012222211 1222 1235577787855 4667664 7777889999999999999988 99999999
Q ss_pred eEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805 405 DGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 405 ~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
+|+++| ++ ++ ..+++||+|+||++.+|.+.|+ +++.+++|.
T Consensus 298 ~g~~~v---~~----------------------~~--~~~~~GD~~~vP~~~~H~~~n~--e~~~l~~~~ 338 (354)
T 2d40_A 298 SGQVII---GN----------------------ET--FSFSAKDIFVVPTWHGVSFQTT--QDSVLFSFS 338 (354)
T ss_dssp EEEEEE---TT----------------------EE--EEEETTCEEEECTTCCEEEEEE--EEEEEEEEE
T ss_pred eEEEEE---CC----------------------EE--EEEcCCCEEEECCCCeEEEEeC--CCEEEEEEc
Confidence 999998 22 33 4799999999999999999985 578888883
No 35
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=99.81 E-value=7.7e-19 Score=183.24 Aligned_cols=250 Identities=14% Similarity=0.122 Sum_probs=158.6
Q ss_pred eeCCCcccc---ccccC-CCeEEEEEeeEEEEEEEe-cCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805 185 IANPQTFVT---PTHLD-ADAVFFVSWGQGTITVIR-ENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI 259 (540)
Q Consensus 185 ~l~Pggl~~---Ph~~~-A~ei~yV~~G~g~ig~V~-~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~ 259 (540)
.+.|++... ||||. .+|++||++|++.+.+-. ++...++.|++||+++||+|++|++.|.++ +. +++.++.+.
T Consensus 53 ~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~-~~-~~l~v~~p~ 130 (350)
T 1juh_A 53 TNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DT-EMTGVIVPG 130 (350)
T ss_dssp EEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TE-EEEEEEESS
T ss_pred EEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCC-CC-EEEEEEcCc
Confidence 566776555 78886 899999999999998754 333478999999999999999999999874 34 777776543
Q ss_pred CCCCcccccccCCCCCcccccccCCHHHHHHhcCCCH--HHHHHHhc-cCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805 260 NLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKR--DSLERVLF-QQDQGAMVKASKQQIRALSRSQEGPSIWPFAG 336 (540)
Q Consensus 260 ~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~--~~v~~l~~-~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~ 336 (540)
.+..||...+....+.++ ..++..+|+... ..++++.. .+..++++..+.++++.|.... +.+ ...
T Consensus 131 ----~~~~~f~~l~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-a~~---~~~ 199 (350)
T 1juh_A 131 ----GFEDLFYYLGTNATDTTH---TPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGT-APA---NTV 199 (350)
T ss_dssp ----CTTHHHHHHSEECCCTTC---CSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTE-ESS---SSC
T ss_pred ----cHHHHHHHhccccccccc---cccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhhccc-ccc---CCc
Confidence 355555432221112221 222234444433 44556654 3445788877766666554221 111 111
Q ss_pred CCCceeE-cC-CCCCcc-cCCCceEEEecC----------CCCCCCccccceEEEEEEcCC--CcccccccCCCcEEEEE
Q 040805 337 ESRGTFN-LF-GKRPSH-SNNFGELFEADS----------NDFRPLEDLDITVSYANISKG--AMAAPFYNSRSTKVAVV 401 (540)
Q Consensus 337 ~~~~~fn-L~-~~~P~~-~n~~G~~~~~~~----------~~~p~L~~l~isv~~~~L~pg--gm~~PH~h~~A~ei~yV 401 (540)
....+++ |. +.+|.| +++.|..+ .+. ...+..+.+.+++..+++.++ |...|+|+...++++||
T Consensus 200 w~~~~~~~l~~~~~p~~~~~~~g~~~-~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~~~~~~~v 278 (350)
T 1juh_A 200 WHTGANALASTAGDPYFIANGWGPKY-LNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQV 278 (350)
T ss_dssp SSSSCCCCCSSTTCCEEECTTCSCEE-EECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSSCEEEEE
T ss_pred cccCcccccCCCCCceEECCCccchh-hcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCCcccCCCcEEEEE
Confidence 2234777 54 567866 66766432 211 112344545678999999884 66777777899999999
Q ss_pred EeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805 402 VAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 402 ~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
++|++.++|-... . ..|++||+++||+|.+|.+.|.++. ..++.+..
T Consensus 279 leG~~~i~i~g~~------------------------~--~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~ 325 (350)
T 1juh_A 279 QEGRVVVQIGDYA------------------------A--TELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSS 325 (350)
T ss_dssp EESCEEEEETTSC------------------------C--EEECTTCEEEECTTCCEEEEESSSS-EEEEEEEE
T ss_pred EeeEEEEEECCeE------------------------E--EEeCCCCEEEECCCCCEEEEecCCe-EEEEEEec
Confidence 9999999986521 1 3799999999999999999987543 56666643
No 36
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=99.79 E-value=1.3e-18 Score=180.95 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=130.9
Q ss_pred CceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805 339 RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS 418 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~ 418 (540)
+..|++.+.+|. .+.+|+++.++..++|.+. ++++.++.|.||++..||||+++.++.||++|+++++++++++.
T Consensus 20 ~~~~~~~~~~~~-~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~-- 94 (361)
T 2vqa_A 20 AFTYAFSKTPLV-LYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGK-- 94 (361)
T ss_dssp CSEECGGGSCCE-EETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSC--
T ss_pred ceEEEcccCCce-ecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCc--
Confidence 468888888775 5689999999999999887 57999999999999999999999999999999999999998652
Q ss_pred cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHH
Q 040805 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESE 498 (540)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~e 498 (540)
.....|++||+++||+|.+|++.|.++++++++.+.... +...+...+.+++|+++|.+
T Consensus 95 --------------------~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~p~~ 153 (361)
T 2vqa_A 95 --------------------VEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDG-TFSEGATFSVTDWLSHTPIA 153 (361)
T ss_dssp --------------------EEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESST-TCCTTSSEEHHHHHHTSCHH
T ss_pred --------------------EEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCC-CccccceecHhHHHHhCCHH
Confidence 122589999999999999999999988899998764443 22211111236899999999
Q ss_pred HHHHHcCCCHHHHHHhhcCCCCceEE
Q 040805 499 AKELAFNTRADEVERVFGNQDQDWFF 524 (540)
Q Consensus 499 vla~AF~vs~e~v~kl~~~q~e~~f~ 524 (540)
+|+++|+++.+.+++|...+. .|+
T Consensus 154 vLa~~~~v~~~~~~~l~~~~~--~i~ 177 (361)
T 2vqa_A 154 WVEENLGWTAAQVAQLPKKQV--YIS 177 (361)
T ss_dssp HHHHHHTCCHHHHTTSCSSCC--CEE
T ss_pred HHHHHhCcCHHHHHhccccCc--eEE
Confidence 999999999999999987653 466
No 37
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=99.78 E-value=1.4e-17 Score=170.74 Aligned_cols=242 Identities=10% Similarity=0.062 Sum_probs=147.0
Q ss_pred cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+.+.++.+.||+...+|||. ..+++||++|++.+.+ +..++.|++||+++||+|++|.+.|.++ +++++.++
T Consensus 45 ~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~~~--~~~~~~~~ 118 (337)
T 1y3t_A 45 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL----DGERYLLISGDYANIPAGTPHSYRMQSH--RTRLVSYT 118 (337)
T ss_dssp SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECST--TEEEEEEE
T ss_pred eEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCcEEEEECCC--CeEEEEEE
Confidence 456667799999988889887 9999999999999987 4567999999999999999999999873 58888777
Q ss_pred ecCCCCCcccccccCCCCCcccccccC-CHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC-
Q 040805 257 KSINLPGQYEAFYGAGGENPESFLRAF-SWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF- 334 (540)
Q Consensus 257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f-~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~- 334 (540)
.+. .+..||..... .+-+.. |..+.. ..+.+.+.++... .++.+ ........+++. |..
T Consensus 119 ~p~----~~~~~~~~~~~---~~~~~~~p~~~~~---~~~~~~l~~~a~~--~gv~~-~~~~~~~~~~~~------~~~~ 179 (337)
T 1y3t_A 119 MKG----NVAHLYSVIGN---PYDHAEHPPYASE---EVSNERFAEAAAV--ATIVF-LDEAKPACSAKL------AELT 179 (337)
T ss_dssp ETT----SSTHHHHHHSE---ECSCSSCCSSCCC---CCTTCTTGGGTSS--CEECC-CCCCCSSCSCEE------CCBC
T ss_pred CCC----CHHHHHHHhCc---ccccccCCCCCCc---ccCHHHHHHhHhh--ccEEE-cCCCCccccccc------hhhh
Confidence 654 34444432221 111111 110000 0111111111111 12211 111111111110 100
Q ss_pred -CCCCCceeEcCCC-CCcccCCCceEEEecCCCCCCCccccceEEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEE
Q 040805 335 -AGESRGTFNLFGK-RPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIA 411 (540)
Q Consensus 335 -~~~~~~~fnL~~~-~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv 411 (540)
......++.++.. .+.+...+..+..+.+. ......+ +..+.+.| |+...+|||+.+.+++||++|++.+.+
T Consensus 180 ~l~~~~~~~v~r~~~~~~~~~~g~~~~~l~~~---~~~~~~~-~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i- 254 (337)
T 1y3t_A 180 ELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQ---KNTDGQF-IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT- 254 (337)
T ss_dssp SCCSSSCCEEECTTCSEEEEETTEEEEEEECG---GGTTTSC-EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE-
T ss_pred cCCCCCCCEEECCCCcCEEEECCcEEEEEecc---cccCCcE-EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE-
Confidence 0111234444432 23344444455555432 1122223 44556666 677789999889999999999999987
Q ss_pred cCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 412 CPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 412 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
++ +. ..|++||+++||++.+|++.|.++ ++.++.+.+.
T Consensus 255 --~~----------------------~~--~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~ 292 (337)
T 1y3t_A 255 --DG----------------------QE--IQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP 292 (337)
T ss_dssp --TT----------------------EE--EEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred --CC----------------------EE--EEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence 22 23 479999999999999999999877 7888776433
No 38
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=99.75 E-value=1.2e-17 Score=161.05 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=109.0
Q ss_pred cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecC----CceEEeeCCCc
Q 040805 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIREN----NRESYNVKRGD 229 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~----~~~~~~l~~GD 229 (540)
..++.++.+. ....|.|.+. .+.++.+++.||++..||||. ++|++||++|++++++++++ ...++.|++||
T Consensus 51 ~~G~~v~~~~--~~~~p~l~~~-~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD 127 (201)
T 1fi2_A 51 PNGSAVTELD--VAEWPGTNTL-GVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGE 127 (201)
T ss_dssp TTSEEEEEES--TTTCGGGTTS-SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTC
T ss_pred CCCcEEEEEe--cccCCCcccC-ceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCC
Confidence 3456688873 3445666632 234445599999999999986 78999999999999998763 33489999999
Q ss_pred EEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCccccccc---CCHHHHHHhcCCCHHHHHHHhccC
Q 040805 230 IIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRA---FSWEILESAFKTKRDSLERVLFQQ 306 (540)
Q Consensus 230 v~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~---f~~evLa~Af~v~~~~v~~l~~~q 306 (540)
+++||+|++|++.|.+ ++++++++++ ++.+|+.+ .++ .++|++ |+++||++||+++.+++++|++..
T Consensus 128 ~~~iP~g~~H~~~N~g-~~~~~~l~v~-~~~~p~~~---~~~-----~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~ 197 (201)
T 1fi2_A 128 TFVIPRGLMHFQFNVG-KTEAYMVVSF-NSQNPGIV---FVP-----LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF 197 (201)
T ss_dssp EEEECTTCCEEEEECS-SSCEEEEEEE-SSSCCCCE---EHH-----HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHS
T ss_pred EEEECCCCeEEEEeCC-CCCEEEEEEE-CCCCCCeE---ehh-----hHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence 9999999999999998 4689999888 44456532 232 257776 999999999999999999998764
No 39
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=99.70 E-value=9.7e-16 Score=153.06 Aligned_cols=190 Identities=12% Similarity=0.113 Sum_probs=130.7
Q ss_pred eeeeeeeCCCccccccc-c-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 180 RLGILIANPQTFVTPTH-L-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~-~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
-+.++++.||+-..+|+ + .+++++||++|++.+.+ +..++.|++||.+++|+|.+|.+.|.+ +++++++++..
T Consensus 60 ~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~----~~~~~~L~~Gd~~~~~~~~~H~~~N~~-~~~~~~l~v~~ 134 (261)
T 1rc6_A 60 VDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA----EGKTFALSEGGYLYCPPGSLMTFVNAQ-AEDSQIFLYKR 134 (261)
T ss_dssp EEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEEEE
T ss_pred EEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCC-CCCEEEEEEEe
Confidence 34455999998765443 3 47899999999999988 567899999999999999999999997 56898887764
Q ss_pred cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCC
Q 040805 258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE 337 (540)
Q Consensus 258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~ 337 (540)
.... +.| . ....+++... + +.+.
T Consensus 135 ~~~~--------~~g----------~----------------------~p~~~v~~~~--~---~~~~------------ 157 (261)
T 1rc6_A 135 RYVP--------VEG----------Y----------------------APWLVSGNAS--E---LERI------------ 157 (261)
T ss_dssp ECCC--------CTT----------C----------------------CCCCEEEEGG--G---SCCC------------
T ss_pred cccc--------CCC----------C----------------------CCceEEcCHH--H---CCcc------------
Confidence 3221 001 0 0011233221 1 1110
Q ss_pred CCceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805 338 SRGTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS 416 (540)
Q Consensus 338 ~~~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~ 416 (540)
.+...+| .++.+.+.+. ..++.+..++|.||+...+|||+...+++||++|++.+.+ ++
T Consensus 158 ------------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~- 217 (261)
T 1rc6_A 158 ------------HYEGMDDVILLDFLPKEL----GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DN- 217 (261)
T ss_dssp -------------------CEEEECSCCST----TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SS-
T ss_pred ------------cCCCCcceEEEEecCccc----CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CC-
Confidence 0001112 2222322211 3367889999999999999999888999999999999874 22
Q ss_pred CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEE
Q 040805 417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFE 474 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~ 474 (540)
+. ..|++||+++||+|.+|++.|.++ +++.++.+.
T Consensus 218 ---------------------~~--~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~ 253 (261)
T 1rc6_A 218 ---------------------NW--IPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK 253 (261)
T ss_dssp ---------------------CE--EEEETTCEEEECSSEEEEEEEC----CEEEEEEE
T ss_pred ---------------------EE--EEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEe
Confidence 22 379999999999999999999888 899988763
No 40
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=99.69 E-value=1.2e-15 Score=161.00 Aligned_cols=240 Identities=13% Similarity=0.087 Sum_probs=143.3
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe-CCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN-TDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N-~g~~e~l~~v~i~ 256 (540)
.+-+++..|.||....+|.|...+++||++|+|.++.| +..++.+++||+|++|+|..|.+.| +| +++|+++++.
T Consensus 122 ~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v---~G~~~~~~~GD~i~~P~g~~H~~~N~~g-de~l~~l~v~ 197 (394)
T 3bu7_A 122 WLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV---DGHKVELGANDFVLTPNGTWHEHGILES-GTECIWQDGL 197 (394)
T ss_dssp TBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE---TTEEEEECTTCEEEECTTCCEEEEECTT-CCCEEEEEEE
T ss_pred eeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE---CCEEEEEcCCCEEEECcCCCEEEEcCCC-CCCEEEEEcc
Confidence 45567889999999999989888999999999977554 4467899999999999999999999 87 5799999877
Q ss_pred ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhc-cCCCCCCCCcCCCC
Q 040805 257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRA-LSRSQEGPSIWPFA 335 (540)
Q Consensus 257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~-l~~~~~~~s~~~~~ 335 (540)
+-.- + . +| +. .++...+... . .-..+...-.... ..+.+..... ..+. -+|. -.|++.
T Consensus 198 d~Pl----~-~-~l-~~----~f~e~~~~~~-~-~~~~~~~~~~~~~---~~~~l~p~~~-~~~~~~sP~----~~y~w~ 256 (394)
T 3bu7_A 198 DIPL----T-N-CL-EA----NFYEVHPNDY-Q-TTDIPLNDSPLTY---GGPALLPQLD-KWDKPYSPL----LKYSWE 256 (394)
T ss_dssp CHHH----H-H-HT-TC----CCEEECTTSS-C-CCCCCTTHHHHHH---CSTTEEESSC-CCCCSSCSC----CEECHH
T ss_pred cchh----h-h-hc-Cc----cccccCcccc-c-CccCCccchhhhh---cCcccccccc-cccCCCCCc----EEecHH
Confidence 4211 0 0 11 00 1111111000 0 0000000001111 1122222210 0000 0000 001110
Q ss_pred CCCCceeEcCC--CCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEc
Q 040805 336 GESRGTFNLFG--KRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIAC 412 (540)
Q Consensus 336 ~~~~~~fnL~~--~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~ 412 (540)
.-.. .|.. ....-....| .+..+++.+-... ...|++....|.||+...||.|+.+ ++.||++|+|.+.|
T Consensus 257 ~~~~---~L~~~~~~~~~~~~~~~~l~l~nP~~g~~~-~~tl~~~~~~l~PG~~~~~HrH~~~-~v~~VleG~G~~~V-- 329 (394)
T 3bu7_A 257 PTYE---ALLNYAKASDGSPYDGLILRYTNPQTGGHP-MLTMGASMQMLRPGEHTKAHRHTGN-VIYNVAKGQGYSIV-- 329 (394)
T ss_dssp HHHH---HHHHHHTTCCCBTTTBEEEEECCTTTSSCS-SSSCEEEEEEECTTCBCCCEEESSC-EEEEEEECCEEEEE--
T ss_pred HHHH---HHHHhhhccCcCcCCceEEEEeCCCCCCCC-CCeeeEEEEEECCCCcCCCcccCCc-EEEEEEeCeEEEEE--
Confidence 0000 0000 0000111223 3344444321111 2258899999999999999999854 79999999997765
Q ss_pred CCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEE
Q 040805 413 PHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFE 474 (540)
Q Consensus 413 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~ 474 (540)
++ ++ ..+++||+|+||+|..|.+.|.+ ++++.++++.
T Consensus 330 -~g----------------------e~--~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~ 367 (394)
T 3bu7_A 330 -GG----------------------KR--FDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN 367 (394)
T ss_dssp -TT----------------------EE--EEECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred -CC----------------------EE--EEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEee
Confidence 22 33 37999999999999999999987 7889998884
No 41
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=99.66 E-value=1.2e-14 Score=146.34 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=132.3
Q ss_pred eeeeeeCCCcccccc-c-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 181 LGILIANPQTFVTPT-H-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph-~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
+.++++.||+-..++ | +.+++++||++|++.+.+ +.+++.|++||.+++|+|.+|.+.|.+ +++++++.+...
T Consensus 64 ~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~----~~~~~~L~~GD~~~~~~~~~H~~~N~~-~~~~~~l~v~~~ 138 (274)
T 1sef_A 64 DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD----GQETHELEAGGYAYFTPEMKMYLANAQ-EADTEVFLYKKR 138 (274)
T ss_dssp EEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTSCCEEEESS-SSCEEEEEEEEE
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCC-CCCEEEEEEEee
Confidence 445599999876543 3 357899999999999887 556899999999999999999999998 568888877632
Q ss_pred CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCC
Q 040805 259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGES 338 (540)
Q Consensus 259 ~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~ 338 (540)
.. | +.| + .....+++.. + +.+.
T Consensus 139 y~-~-------~~g---------------------~-----------~p~~~v~~~~--d---~~~~------------- 160 (274)
T 1sef_A 139 YQ-P-------LAG---------------------H-----------QPYKVVGSIH--D---QQPE------------- 160 (274)
T ss_dssp CC-C-------CTT---------------------C-----------CCCCEEEEGG--G---SCCE-------------
T ss_pred ee-e-------CCC---------------------C-----------CCcceeCChH--H---CCcc-------------
Confidence 21 0 000 0 0112333332 1 1110
Q ss_pred CceeEcCCCCCcccC-CCceEEEecCCCCCCCccccceEEEEEEcCCCcccc-cccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805 339 RGTFNLFGKRPSHSN-NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAP-FYNSRSTKVAVVVAGDGYIEIACPHVS 416 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n-~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~P-H~h~~A~ei~yV~~G~g~v~vv~p~~~ 416 (540)
. +.. .+..+..+.+... ..++.+..++|.||+...+ |||+ ..+++||++|++.+.+ ++
T Consensus 161 ----~-------~~~~~g~~~~~l~~~~~----~~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i---~~- 220 (274)
T 1sef_A 161 ----E-------YEGMTDVLLWSLLPKEF----DFDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DN- 220 (274)
T ss_dssp ----E-------GGGCTTEEEEECSCSST----TCSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TT-
T ss_pred ----c-------cCCCCCeEEEEeCCccc----CCCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEE---CC-
Confidence 0 111 1223333333221 2368899999999999988 9995 6799999999999986 22
Q ss_pred CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEE
Q 040805 417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFE 474 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~ 474 (540)
+. ..|++||+++||++.+|++.|.++ +++.++++.
T Consensus 221 ---------------------~~--~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~ 256 (274)
T 1sef_A 221 ---------------------EW--YPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK 256 (274)
T ss_dssp ---------------------EE--EEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred ---------------------EE--EEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEE
Confidence 22 379999999999999999999888 889988764
No 42
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=99.64 E-value=2e-14 Score=140.87 Aligned_cols=186 Identities=13% Similarity=0.227 Sum_probs=126.9
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
...+.++.+.||+...+|.|..++++||++|++.+++ +..++.|++||++++|+|++|.+.|.. +++++.+..
T Consensus 36 ~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i----~~~~~~l~~Gd~~~~p~~~~H~~~a~~---~~~~l~i~~ 108 (227)
T 3rns_A 36 NSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI----ENNKKTISNGDFLEITANHNYSIEARD---NLKLIEIGE 108 (227)
T ss_dssp SEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE----SSCEEEEETTEEEEECSSCCEEEEESS---SEEEEEEEE
T ss_pred CcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC---CcEEEEEEe
Confidence 4467778999999988888899999999999999998 456799999999999999999999964 588887763
Q ss_pred cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCC
Q 040805 258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE 337 (540)
Q Consensus 258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~ 337 (540)
.-. + .++ ++ +.++.|.. +.
T Consensus 109 ~~~-~----~~~--~~-----------------------~~~~~l~~----~~--------------------------- 127 (227)
T 3rns_A 109 KIG-D----GNM--EN-----------------------KTLKMLES----AS--------------------------- 127 (227)
T ss_dssp CC--------------------------------------------------C---------------------------
T ss_pred ecc-c----chh--hh-----------------------hHhhcCCc----cc---------------------------
Confidence 110 0 000 00 00111110 11
Q ss_pred CCceeEcCCCCCcccCCCce-EEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805 338 SRGTFNLFGKRPSHSNNFGE-LFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS 416 (540)
Q Consensus 338 ~~~~fnL~~~~P~~~n~~G~-~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~ 416 (540)
.|++.+..+ |. .++. ...+- .+-++.+..+.+.||+...+|||+ ..+++||++|++.+.+ ++
T Consensus 128 ---~~~~~d~~~-~~-~g~~~~~~l~-------~~~~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i---~g- 190 (227)
T 3rns_A 128 ---AFNLAEVVE-YQ-EGKIVSKNLV-------AKPNLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYV---DG- 190 (227)
T ss_dssp ---CEESGGGSC-CC-TTCEEEEEEE-------EETTEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEE---TT-
T ss_pred ---cCcHHHccc-cC-CCCEEEEEEE-------ECCCeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEE---CC-
Confidence 122222212 21 1221 11111 122578889999999999999997 6789999999999975 12
Q ss_pred CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805 417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
+. ..|++||.++||+|.+|++.|. .+++.++.
T Consensus 191 ---------------------~~--~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll 222 (227)
T 3rns_A 191 ---------------------KP--FIVKKGESAVLPANIPHAVEAE-TENFKMLL 222 (227)
T ss_dssp ---------------------EE--EEEETTEEEEECTTSCEEEECC-SSCEEEEE
T ss_pred ---------------------EE--EEECCCCEEEECCCCcEEEEeC-CCCEEEEE
Confidence 22 4799999999999999999983 34565543
No 43
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=99.64 E-value=8.8e-16 Score=161.22 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=122.6
Q ss_pred ceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCc
Q 040805 340 GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSS 419 (540)
Q Consensus 340 ~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~ 419 (540)
..|++.+.+|. ...+|+++.++...+|.+. ++++.++.|.||++..||||+ +.+|+||++|++++++++.++
T Consensus 48 ~~~~~~~~~~~-~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g---- 119 (385)
T 1j58_A 48 MKFSFSDTHNR-LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKG---- 119 (385)
T ss_dssp CEECGGGSCCE-EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTS----
T ss_pred eEEEcccCCcc-ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCC----
Confidence 57888888874 4689999999999999987 799999999999999999998 899999999999999998765
Q ss_pred ccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecCCCCccccccccccccccCCHH
Q 040805 420 SERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINAEGNIRFPLAGRNKIFKVMESE 498 (540)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a~~~~~~~LAG~~svl~~~~~e 498 (540)
+.+...|++||+++||+|.+|++.|.+ +++.|+. |+...-.....++ ..++|..+|.+
T Consensus 120 ------------------~~~~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~p~e 178 (385)
T 1j58_A 120 ------------------RSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQ--LTDWLAHTPKE 178 (385)
T ss_dssp ------------------CEEEEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEEE--HHHHHHTSCHH
T ss_pred ------------------cEEEEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchhh--hhhhhhcccHH
Confidence 333358999999999999999999975 4577776 4322111111122 26899999999
Q ss_pred HHHHHcCCCHHHHHHhhcCC
Q 040805 499 AKELAFNTRADEVERVFGNQ 518 (540)
Q Consensus 499 vla~AF~vs~e~v~kl~~~q 518 (540)
+|+.+|+++.+++++|...+
T Consensus 179 vla~~~~vs~~~~~~l~~~~ 198 (385)
T 1j58_A 179 VIAANFGVTKEEISNLPGKE 198 (385)
T ss_dssp HHHHHHTCCTGGGTTSCSSC
T ss_pred HHHHHhCCCHHHHHhccccc
Confidence 99999999999999987643
No 44
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=99.63 E-value=7.6e-14 Score=140.08 Aligned_cols=191 Identities=10% Similarity=0.065 Sum_probs=136.7
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCC-ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN-RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~-~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
..+.+.+++|.||+...+|++.+++++||++|++++.+ + ..++.|++||.+++|+|..|++.|. ++++++.+
T Consensus 68 ~~f~~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l----~~g~~~~L~~Gds~y~p~~~~H~~~N~---~~Ar~l~V 140 (266)
T 4e2q_A 68 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN----TSSSSKKLTVDSYAYLPPNFHHSLDCV---ESATLVVF 140 (266)
T ss_dssp CSSEEEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC------CCCEEECTTEEEEECTTCCCEEEES---SCEEEEEE
T ss_pred CcEEEEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE----CCCcEEEEcCCCEEEECCCCCEEEEeC---CCEEEEEE
Confidence 34556677999999877777789999999999998887 3 5679999999999999999999995 36887766
Q ss_pred eecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805 256 IKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA 335 (540)
Q Consensus 256 ~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~ 335 (540)
..... | +.| .....||.- +..+.+.
T Consensus 141 ~k~y~-~-------~~g---------------------------------~~p~~~v~~----~~dv~~~---------- 165 (266)
T 4e2q_A 141 ERRYE-Y-------LGS---------------------------------HTTELIVGS----TDKQPLL---------- 165 (266)
T ss_dssp EEECC-C-------CTT---------------------------------CCCCCEEEE----GGGSCCB----------
T ss_pred EeEee-e-------CCC---------------------------------CCCceeeCc----HhHCCCc----------
Confidence 53221 1 111 011233321 1122211
Q ss_pred CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccc-cccCCCcEEEEEEeceEEEEEEcCC
Q 040805 336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAP-FYNSRSTKVAVVVAGDGYIEIACPH 414 (540)
Q Consensus 336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~P-H~h~~A~ei~yV~~G~g~v~vv~p~ 414 (540)
+ +...+-.+..+.+.+. ..++.+..++++|||.... |.| ...+.+||++|+|.+.+ +
T Consensus 166 -----~---------~~g~~~~~r~l~p~~~----~~d~~~~~~t~~PG~~~p~~e~H-~~eh~~~vL~G~g~y~l---~ 223 (266)
T 4e2q_A 166 -----E---------TPGEVFELRKLLPMSV----AYDFNIHTMDFQPGEFLNVKEVH-YNQHGLLLLEGQGIYRL---G 223 (266)
T ss_dssp -----C---------CTTCCSEEEESSCCST----TCSEEEEEEEECTTCBCSSCCCC-SCCEEEEEEECEEEEEE---T
T ss_pred -----c---------cCCCcEEEEEccCccc----ccceEEEEEEECCCcCcCCceEc-ccceEEEEEeceEEEEE---C
Confidence 0 1111123555555543 4479999999999999987 555 45589999999999873 1
Q ss_pred CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805 415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
+ .. ..|++||++++|++.+|++.|.|++++.++-...
T Consensus 224 ~----------------------~~--~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~ykd 260 (266)
T 4e2q_A 224 D----------------------NW--YPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKD 260 (266)
T ss_dssp T----------------------EE--EEEETTCEEEECTTCCEEEEEESSSCEEEEEEEE
T ss_pred C----------------------EE--EEecCCCEEEECCCCcEEEEeCCCCCEEEEEEcc
Confidence 1 12 4799999999999999999999999999987743
No 45
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=99.61 E-value=3e-14 Score=140.89 Aligned_cols=184 Identities=11% Similarity=0.132 Sum_probs=128.3
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEE-ECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR-VPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~-iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
.++++++.||+...+|+|...+++||++|++.+.+ +..++.|++||.++ ||+|++|.+.|.+ +++++++.+...
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~----~~~~~~l~~Gd~i~~ip~~~~H~~~n~~-~~~~~~l~i~r~ 109 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV----GDVTRKMTALESAYIAPPHVPHGARNDT-DQEVIAIDIKRL 109 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE----TTEEEEEETTTCEEEECTTCCEEEEECS-SSCEEEEEEEEC
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE----CCEEEEECCCCEEEEcCCCCcEeeEeCC-CCcEEEEEEecc
Confidence 35556899999989999999999999999999887 45689999999885 9999999999998 467887765422
Q ss_pred CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCC
Q 040805 259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGES 338 (540)
Q Consensus 259 ~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~ 338 (540)
...++ + ..+. ++++.. |... . . ..
T Consensus 110 ~~~e~-----~----~~p~-------------------------------g~~~~~-------L~~~--~-~-~~----- 133 (243)
T 3h7j_A 110 KADET-----Y----TSPE-------------------------------DYFLDI-------FKTR--D-L-LP----- 133 (243)
T ss_dssp CTTCC-----C----CCCT-------------------------------TSEECC-------EECS--C-S-BT-----
T ss_pred Ccccc-----C----CCch-------------------------------hhhhhh-------ccCc--c-c-cc-----
Confidence 11110 0 0000 111100 1000 0 0 00
Q ss_pred CceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805 339 RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR 417 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~ 417 (540)
.+ + +..+ ....+.+..++|.| |+...+|||+. .+++||++|++.+.+=.
T Consensus 134 --~~------~--------~~~~--------~~~~~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i~~----- 183 (243)
T 3h7j_A 134 --GM------E--------VTFF--------VEDWVEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTVEG----- 183 (243)
T ss_dssp --TB------C--------EEEE--------EETTEEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEETT-----
T ss_pred --Cc------c--------eeee--------ccceeEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEECC-----
Confidence 00 0 0000 11135677889999 99999999975 69999999999987421
Q ss_pred CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
+. ..|++||+++||+|.+|.+.|.+++++.++.+.+.
T Consensus 184 --------------------~~--~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p 220 (243)
T 3h7j_A 184 --------------------CT--VEMKFGTAYFCEPREDHGAINRSEKESKSINIFFP 220 (243)
T ss_dssp --------------------EE--EEECTTCEEEECTTCCEEEEECSSSCEEEEEEEES
T ss_pred --------------------EE--EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcC
Confidence 22 36999999999999999999998888888776443
No 46
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=99.58 E-value=1.8e-13 Score=138.35 Aligned_cols=198 Identities=17% Similarity=0.213 Sum_probs=132.3
Q ss_pred cceeeeeeeCCCccc-ccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 178 KYRLGILIANPQTFV-TPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~-~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.+.+.++++.||+.. .|+ +|..++++||++|++.+.+ +.+++.|++||.++||+|++|.+.|.+ +++++++.+
T Consensus 67 ~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v----~g~~~~L~~GD~i~ip~~~~H~~~N~g-~~~~~~l~v 141 (278)
T 1sq4_A 67 TFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL----QGQVHAMQPGGYAFIPPGADYKVRNTT-GQHTRFHWI 141 (278)
T ss_dssp SCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE----SSCEEEECTTEEEEECTTCCEEEECCS-SSCEEEEEE
T ss_pred cEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCcEEEEECC-CCCEEEEEE
Confidence 344555699999876 454 4778999999999999988 456899999999999999999999997 568998877
Q ss_pred eecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805 256 IKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA 335 (540)
Q Consensus 256 ~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~ 335 (540)
...... +.| ++ .. ..|+- +..+ +.+.
T Consensus 142 ~~~y~~--------~~g----------~~---------------------~p-~~~vg-n~~d---i~~~---------- 167 (278)
T 1sq4_A 142 RKHYQK--------VDG----------VP---------------------LP-EAFVT-NEQD---IQPL---------- 167 (278)
T ss_dssp EEECCC--------CTT----------CC---------------------CC-CCEEE-EGGG---SCCE----------
T ss_pred Eecccc--------CCC----------Cc---------------------CC-ccccc-chhh---cCcc----------
Confidence 642221 111 00 00 11221 0111 1110
Q ss_pred CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805 336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415 (540)
Q Consensus 336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~ 415 (540)
++ |.........+.+.+.+ ...++.+..++|.||+-...|-|..-.+.+||++|++.+.+ ++
T Consensus 168 -----~~------~~~~~~~~~~r~l~p~~----~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~ 229 (278)
T 1sq4_A 168 -----VM------PDTEGRWSTTRFVDMSD----MRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQ 229 (278)
T ss_dssp -----EC------SSGGGCEEEECSSCTTC----TTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TT
T ss_pred -----cC------CCCCCceeEEEEecCCC----cCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CC
Confidence 00 00000000111111111 13478899999999999886444445679999999999874 22
Q ss_pred CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-Eec
Q 040805 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EIN 476 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~ 476 (540)
+. ..|++||++++++|.+|++.|.++++++++.+ |.|
T Consensus 230 ----------------------~~--~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d~n 267 (278)
T 1sq4_A 230 ----------------------DW--VEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVN 267 (278)
T ss_dssp ----------------------EE--EEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECS
T ss_pred ----------------------EE--EEeCCCCEEEECCCCCEEEEcCCCCCEEEEEEEEcC
Confidence 22 47999999999999999999999999998765 555
No 47
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=99.57 E-value=3.4e-13 Score=140.99 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=140.5
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.+++..|.||+...+|.|..++++||++|+|...+| +...+.+++||+|++|+|..|.+.|+| ++++++++++
T Consensus 101 ~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v---dG~~~~~~~GD~v~iP~g~~H~~~N~g-de~l~~l~v~ 176 (368)
T 3nw4_A 101 PTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV---NGDPVRMSRGDLLLTPGWCFHGHMNDT-DQPMAWIDGL 176 (368)
T ss_dssp SSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE---TTEEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred CceEEEEEEECCCCccCceecccceEEEEEecceEEEEE---CCEEEEEeCCCEEEECCCCcEEeEeCC-CCCeEEEEec
Confidence 456688889999999999988889999999999953343 446899999999999999999999998 5799999888
Q ss_pred ecCCCCCcccccccCCCCCcccccccCCH------------HHHHHhc-CC-CHHHHHHHhccCCCCcEEEccc----hh
Q 040805 257 KSINLPGQYEAFYGAGGENPESFLRAFSW------------EILESAF-KT-KRDSLERVLFQQDQGAMVKASK----QQ 318 (540)
Q Consensus 257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~------------evLa~Af-~v-~~~~v~~l~~~q~~g~Iv~~~~----e~ 318 (540)
|-.- .. +|-. +++-..+. +--.+.| ++ +... ... .....|++-+= +.
T Consensus 177 D~Pl-----~~-~l~~-----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~---~~~-~~~sP~~~ypw~~~~~a 241 (368)
T 3nw4_A 177 DIPF-----SQ-QMDV-----GFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSG---LQN-TVASPIGAYRWEFTDRA 241 (368)
T ss_dssp CHHH-----HH-HHTC-----CCEEECCSSCSCCCCCSSCHHHHHHCSTTCCCGGG---CSC-CSSCSCCEECHHHHHHH
T ss_pred chHH-----Hh-hcCc-----eeeecccccccccccccCCcccchhhccccccccc---cCC-CCCCCceecCHHHHHHH
Confidence 4211 11 1100 11111111 1000111 00 0000 000 00011111100 00
Q ss_pred hhccCCCCCCCCcCCCCCCCCceeEcCC-CCCcccCCC-c-e-EEEecCCC-CCCCccccceEEEEEEcCCCcccccccC
Q 040805 319 IRALSRSQEGPSIWPFAGESRGTFNLFG-KRPSHSNNF-G-E-LFEADSND-FRPLEDLDITVSYANISKGAMAAPFYNS 393 (540)
Q Consensus 319 l~~l~~~~~~~s~~~~~~~~~~~fnL~~-~~P~~~n~~-G-~-~~~~~~~~-~p~L~~l~isv~~~~L~pggm~~PH~h~ 393 (540)
|.. ...|.. ..+ .... | . +..+|+.+ -+.+. .|++....|.||.-..||=|+
T Consensus 242 L~~-------------------~~~l~~~~~~--~~~~~g~~~~~y~NP~tg~~~~p--ti~~~~~~L~pG~~t~~hRht 298 (368)
T 3nw4_A 242 LTE-------------------QLLLEDEGQP--ATVAPGHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEV 298 (368)
T ss_dssp HHH-------------------HHHHHHTTCS--CSSBTTEEEEECBCTTTSSBSSS--SCEEEEEEECTTCBCCCEEES
T ss_pred HHh-------------------hhhhhhccCC--CcccCceEEEEEeCCCCCCCcch--hHHhheEEECCCCccCCeecc
Confidence 100 000110 111 1111 3 3 45555432 23444 488889999999999999987
Q ss_pred CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
.+ .|.||++|+|.+.| ++ ++ .++++||+|+||.+.+|...|+ +++.+++|
T Consensus 299 ~s-~Vy~V~eG~G~~~I---~~----------------------~~--~~w~~gD~fvvP~w~~h~~~n~--~~a~Lf~~ 348 (368)
T 3nw4_A 299 GS-TVFQVFEGAGAVVM---NG----------------------ET--TKLEKGDMFVVPSWVPWSLQAE--TQFDLFRF 348 (368)
T ss_dssp SC-EEEEEEESCEEEEE---TT----------------------EE--EEECTTCEEEECTTCCEEEEES--SSEEEEEE
T ss_pred cc-EEEEEEeCcEEEEE---CC----------------------EE--EEecCCCEEEECCCCcEEEEeC--CCEEEEEE
Confidence 54 89999999999987 22 34 4799999999999999999987 46777777
Q ss_pred E
Q 040805 474 E 474 (540)
Q Consensus 474 ~ 474 (540)
.
T Consensus 349 ~ 349 (368)
T 3nw4_A 349 S 349 (368)
T ss_dssp E
T ss_pred e
Confidence 3
No 48
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=99.53 E-value=1.9e-12 Score=128.30 Aligned_cols=190 Identities=14% Similarity=0.097 Sum_probs=130.3
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
+-+.++++.||+-..+|+ .++++||++|++.+.+ +..++.|++||.++||+|++|.+.|. .+++++.+...
T Consensus 50 ~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~---~~~~~l~v~~~ 120 (246)
T 1sfn_A 50 FVQFTAEMPAGAQATESV--YQRFAFVLSGEVDVAV----GGETRTLREYDYVYLPAGEKHMLTAK---TDARVSVFEKP 120 (246)
T ss_dssp SEEEEEEECTTCEEECCS--SEEEEEEEEEEEEEEC----SSCEEEECTTEEEEECTTCCCEEEEE---EEEEEEEEEEC
T ss_pred EEEEEEEECCCCcCCCCc--eeEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeC---CCEEEEEEEee
Confidence 334455999998776665 8899999999998887 45689999999999999999999997 36777766532
Q ss_pred CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCC
Q 040805 259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGES 338 (540)
Q Consensus 259 ~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~ 338 (540)
.. | +.|-. .. ..++. +..++. +. +
T Consensus 121 y~-~-------~~g~~-------------------------------~p-~~~vg-~~~dv~---~~-------~----- 144 (246)
T 1sfn_A 121 YQ-T-------VEGVQ-------------------------------AP-GVYWG-NERENP---GY-------P----- 144 (246)
T ss_dssp CC-C-------BTTBC-------------------------------CC-CCEEE-ETTTCC---CE-------E-----
T ss_pred ec-c-------CCCCc-------------------------------CC-ceeec-cHhhCC---cc-------c-----
Confidence 21 1 11100 00 12221 111111 00 0
Q ss_pred CceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805 339 RGTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR 417 (540)
Q Consensus 339 ~~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~ 417 (540)
+....| .+..+.+.+. ..++.+..++|.||+-...|.+....+.+||++|++.+.+ ++
T Consensus 145 ------------~~~~~g~~~r~l~p~~~----~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~-- 203 (246)
T 1sfn_A 145 ------------FEGDDHLIARKLLPDEP----AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE-- 203 (246)
T ss_dssp ------------TTSCTTEEEEECSCCCT----TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT--
T ss_pred ------------cCCCCCeEEEEeCCCcc----CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CC--
Confidence 111112 2222332221 3478899999999999887655567789999999999985 22
Q ss_pred CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
+. ..|++||.++++++.+|++.|.+++++.++.+..-
T Consensus 204 --------------------~~--~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~kd~ 240 (246)
T 1sfn_A 204 --------------------NY--YPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDM 240 (246)
T ss_dssp --------------------EE--EEEETTCEEEECTTCCEEEEEESSSCEEEEEEEEC
T ss_pred --------------------EE--EEcCCCCEEEECCCCCEEEEcCCCCCEEEEEEEec
Confidence 23 37999999999999999999999999999988543
No 49
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=99.38 E-value=2.4e-12 Score=109.20 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=73.9
Q ss_pred eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHH
Q 040805 221 ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE 300 (540)
Q Consensus 221 ~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~ 300 (540)
....|++|||++||+|+++.+.+.. .|.||++-.+.++ ...+||||+. .|+|+++|.++|+.||+++.++++
T Consensus 6 ~~~~l~~G~v~vVPq~~~v~~~A~~---~le~v~F~tna~~---~~~~~LAG~~--~Svl~~l~~evla~aF~~s~ee~~ 77 (93)
T 1dgw_Y 6 YAATLSEGDIIVIPSSFPVALKAAS---DLNMVGIGVNAEN---NERNFLAGHK--ENVIRQIPRQVSDLTFPGSGEEVE 77 (93)
T ss_dssp EEEEECTTCEEEECTTCCEEEEESS---SEEEEEEEESCTT---CCEEESSSST--TBSTTTSCHHHHHHHSSSCTHHHH
T ss_pred hhceecCCcEEEECCCCceeEEecC---CeEEEEEEecCCC---CeeeeccCCc--ccHHHhCCHHHHHHHcCCCHHHHH
Confidence 3568999999999999999999974 3999988644433 4578999953 399999999999999999999999
Q ss_pred HHhccCCCCcEEEc
Q 040805 301 RVLFQQDQGAMVKA 314 (540)
Q Consensus 301 ~l~~~q~~g~Iv~~ 314 (540)
+|+..|.+++|+.+
T Consensus 78 ~l~~~q~e~~~~~~ 91 (93)
T 1dgw_Y 78 ELLENQKESYFVDG 91 (93)
T ss_dssp HHTTSCCCCSEECC
T ss_pred HHHhcCCCceeccC
Confidence 99999998998864
No 50
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=99.19 E-value=1.7e-10 Score=106.62 Aligned_cols=85 Identities=18% Similarity=0.273 Sum_probs=69.9
Q ss_pred ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEec-----CCceEEeeCCCcEEEECCCCeEEEEeCCCCcc
Q 040805 175 GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE-----NNRESYNVKRGDIIRVPSGNTFYVTNTDDDEK 249 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~-----~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~ 249 (540)
|...+.+.++.+.||+...+|+|+..+++||++|++.+.+-.. +....+.|++||+++||+|++|++.|.+.+++
T Consensus 37 g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~ 116 (163)
T 1lr5_A 37 GMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHED 116 (163)
T ss_dssp CCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSC
T ss_pred CCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCC
Confidence 4455667777999999988999999999999999999887331 11278999999999999999999999872468
Q ss_pred EEEEEEeecC
Q 040805 250 LYIVKFIKSI 259 (540)
Q Consensus 250 l~~v~i~~~~ 259 (540)
+++++++.+.
T Consensus 117 ~~~l~i~~~~ 126 (163)
T 1lr5_A 117 LQVLVIISRP 126 (163)
T ss_dssp EEEEEEEESS
T ss_pred EEEEEEECCC
Confidence 9999888554
No 51
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=99.12 E-value=3e-10 Score=104.67 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=69.6
Q ss_pred ccccceeeeeeeCCCc-ccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC-CeEEEEeCCCCccEE
Q 040805 175 GLEKYRLGILIANPQT-FVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG-NTFYVTNTDDDEKLY 251 (540)
Q Consensus 175 Gi~~~rl~~~~l~Pgg-l~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG-~~h~~~N~g~~e~l~ 251 (540)
|...+.+.++++.||+ ...+||| +..|++||++|++.+.+ +..++.|++||+++||+| ++|++.|.+ +++++
T Consensus 42 g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~i~i~~~~~~H~~~n~~-~~~~~ 116 (162)
T 3l2h_A 42 GLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM----ENDQYPIAPGDFVGFPCHAAAHSISNDG-TETLV 116 (162)
T ss_dssp TCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCCEEEECCS-SSCEE
T ss_pred CCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE----CCEEEEeCCCCEEEECCCCceEEeEeCC-CCCEE
Confidence 5666777778999999 5788988 79999999999999887 456899999999999998 999999997 57899
Q ss_pred EEEEeecC
Q 040805 252 IVKFIKSI 259 (540)
Q Consensus 252 ~v~i~~~~ 259 (540)
++.+..+.
T Consensus 117 ~l~v~~p~ 124 (162)
T 3l2h_A 117 CLVIGQRL 124 (162)
T ss_dssp EEEEEECC
T ss_pred EEEEECCC
Confidence 99888654
No 52
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=3e-10 Score=99.70 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=65.5
Q ss_pred cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+.+.++++.||+...+|||. ..+++||++|++.+.+ ++..++.|++||+++||+|++|++.|.+ ++++++++++
T Consensus 38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---~~~~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~v~ 113 (125)
T 3h8u_A 38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ---GNGIVTHLKAGDIAIAKPGQVHGAMNSG-PEPFIFVSVV 113 (125)
T ss_dssp SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC---STTCEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEEE
T ss_pred CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE---CCCeEEEeCCCCEEEECCCCEEEeEeCC-CCCEEEEEEE
Confidence 345666799999999999987 5899999999998754 2346799999999999999999999987 5689999988
Q ss_pred ecCC
Q 040805 257 KSIN 260 (540)
Q Consensus 257 ~~~~ 260 (540)
.|..
T Consensus 114 ~p~~ 117 (125)
T 3h8u_A 114 APGN 117 (125)
T ss_dssp ESTT
T ss_pred CCCc
Confidence 6543
No 53
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=99.09 E-value=6.7e-10 Score=103.81 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=68.9
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.+.++++.||+...+|||...+++||++|++.+.+ +..++.|++||+++||+|++|++.|.+.++++++++++
T Consensus 54 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~ 129 (167)
T 3ibm_A 54 PAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL----DDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIV 129 (167)
T ss_dssp SSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE----TTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEE
T ss_pred CcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEE
Confidence 34556677999999999999999999999999999887 55689999999999999999999998734689999988
Q ss_pred ecC
Q 040805 257 KSI 259 (540)
Q Consensus 257 ~~~ 259 (540)
.+.
T Consensus 130 ~~~ 132 (167)
T 3ibm_A 130 DSD 132 (167)
T ss_dssp ESS
T ss_pred eCC
Confidence 654
No 54
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=99.06 E-value=9.3e-10 Score=92.13 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=63.9
Q ss_pred ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+.+.++.+.||+...+|+|. ..+++||++|++.+.+ +...+.|++||+++||+|++|.+.|.+ ++++.++.++.
T Consensus 28 ~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~~~v~~ 102 (105)
T 1v70_A 28 MLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV----GEEEALLAPGMAAFAPAGAPHGVRNES-ASPALLLVVTA 102 (105)
T ss_dssp EEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCEEEECCS-SSCEEEEEEEE
T ss_pred eEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEeC
Confidence 45566699999988888886 5789999999999887 457899999999999999999999987 46898888775
Q ss_pred c
Q 040805 258 S 258 (540)
Q Consensus 258 ~ 258 (540)
|
T Consensus 103 p 103 (105)
T 1v70_A 103 P 103 (105)
T ss_dssp S
T ss_pred C
Confidence 4
No 55
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=99.06 E-value=1.2e-09 Score=94.87 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=73.4
Q ss_pred cccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE-eeC
Q 040805 148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY-NVK 226 (540)
Q Consensus 148 ~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~-~l~ 226 (540)
.|.-.-.++.|.++.+- . -..+.+..+.+.||+...+|||+..+++||++|++.+.+ +...+ .|+
T Consensus 6 ~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~~l~ 71 (117)
T 2b8m_A 6 VYEFKRDAKTKVVEKLV--N--------TEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL----EDQEPHNYK 71 (117)
T ss_dssp CCCCCSSCCSCEEEEEE--E--------CSSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE----TTSCCEEEE
T ss_pred eeeeecCCCcceeeeec--C--------CCceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE----CCEEEEEeC
Confidence 35445556677777652 1 123345556889999988999999999999999999887 34467 999
Q ss_pred CCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 227 RGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 227 ~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+||+++||+|++|++.|.+ ++++.++.+.
T Consensus 72 ~Gd~i~ip~~~~H~~~~~~-~~~~~~l~i~ 100 (117)
T 2b8m_A 72 EGNIVYVPFNVKMLIQNIN-SDILEFFVVK 100 (117)
T ss_dssp TTCEEEECTTCEEEEECCS-SSEEEEEEEE
T ss_pred CCCEEEECCCCcEEeEcCC-CCCEEEEEEE
Confidence 9999999999999999987 4578888775
No 56
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=99.05 E-value=1.3e-09 Score=93.02 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=66.0
Q ss_pred cceeeeeeeCCCcccccc--ccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 178 KYRLGILIANPQTFVTPT--HLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph--~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
.+.+..+++.||+...+| +|. ..+++||++|++.+.+ +..++.|++||+++||+|++|++.|.+ +++++++.
T Consensus 20 ~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~i~~~~~H~~~~~~-~~~~~~~~ 94 (113)
T 2gu9_A 20 QVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV----DGHTQALQAGSLIAIERGQAHEIRNTG-DTPLKTVN 94 (113)
T ss_dssp TEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE----TTEEEEECTTEEEEECTTCCEEEECCS-SSCEEEEE
T ss_pred cEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEcCC-CCCEEEEE
Confidence 345566699999988777 776 8999999999999887 456899999999999999999999987 46898888
Q ss_pred EeecCC
Q 040805 255 FIKSIN 260 (540)
Q Consensus 255 i~~~~~ 260 (540)
++.+..
T Consensus 95 v~~~~~ 100 (113)
T 2gu9_A 95 FYHPPA 100 (113)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 876544
No 57
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=99.03 E-value=7.6e-10 Score=99.10 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=67.0
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.+..+++.||+...+|||...+++||++|++.+.+.. +..++.|++||+++||+|++|.+.|.+ +++++++.++
T Consensus 37 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~--~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~l~i~ 113 (145)
T 3ht1_A 37 DRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD--QGRTEEVGPGEAIFIPRGEPHGFVTGP-GQTCRFLVVA 113 (145)
T ss_dssp CSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGG--GTEEEEECTTCEEEECTTCCBEEECCT-TCCEEEEEEE
T ss_pred CcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeE--CCEEEEECCCCEEEECCCCeEEeEcCC-CCCEEEEEEE
Confidence 4566777799999999999999999999999999887211 447899999999999999999999987 5679888887
Q ss_pred ecC
Q 040805 257 KSI 259 (540)
Q Consensus 257 ~~~ 259 (540)
.+.
T Consensus 114 ~~~ 116 (145)
T 3ht1_A 114 PCE 116 (145)
T ss_dssp ESC
T ss_pred CCC
Confidence 443
No 58
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=98.99 E-value=1.8e-09 Score=99.99 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=67.4
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.+.+.++++.||+...+|+|...+++||++|++.+.+ +..++.|++||+++||+|++|.+.|.+ ++++.+++++.
T Consensus 43 ~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v----~g~~~~l~~Gd~i~ip~~~~H~~~n~g-~~~~~~l~i~~ 117 (156)
T 3kgz_A 43 ACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV----GETISDVAQGDLVFIPPMTWHQFRANR-GDCLGFLCVVN 117 (156)
T ss_dssp SEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCEEEECCS-SSCEEEEEEEE
T ss_pred cEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEEe
Confidence 4455666899999999999999999999999999887 557899999999999999999999998 56899999885
Q ss_pred cC
Q 040805 258 SI 259 (540)
Q Consensus 258 ~~ 259 (540)
+.
T Consensus 118 ~~ 119 (156)
T 3kgz_A 118 AA 119 (156)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 59
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=98.98 E-value=2.7e-09 Score=97.13 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=64.5
Q ss_pred ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCC--ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENN--RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~--~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
+.+.++.+.||+...+|||. .++++||++|++.+.+-.... ..++.|++||+++||+|++|++.|.+ +++++++++
T Consensus 43 ~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~-~~~~~~l~i 121 (148)
T 2oa2_A 43 LQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTG-NRPLKLYSI 121 (148)
T ss_dssp CEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECS-SSCEEEEEE
T ss_pred eEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECC-CCCEEEEEE
Confidence 44555699999988899886 679999999999988722110 12389999999999999999999987 568988888
Q ss_pred eecCC
Q 040805 256 IKSIN 260 (540)
Q Consensus 256 ~~~~~ 260 (540)
+.+..
T Consensus 122 ~~~~~ 126 (148)
T 2oa2_A 122 YAPPQ 126 (148)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 76544
No 60
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=98.98 E-value=1.6e-09 Score=91.56 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=61.5
Q ss_pred cceeeeeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.+.+..+++.||+...+|+|..+ +++||++|++++.+ ++. ..+.|++||++++|+|++|++.|.+ +++++++.+
T Consensus 17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g-~~~~~~l~v 92 (97)
T 2fqp_A 17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET---PEGSVTSQLTRGVSYTRPEGVEHNVINPS-DTEFVFVEI 92 (97)
T ss_dssp SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE---TTEEEEEEECTTCCEEECTTCEEEEECCS-SSCEEEEEE
T ss_pred eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe---CCCCEEEEEcCCCEEEeCCCCcccCEeCC-CCcEEEEEE
Confidence 34555669999998777877765 69999999998876 222 6899999999999999999999998 467888765
Q ss_pred e
Q 040805 256 I 256 (540)
Q Consensus 256 ~ 256 (540)
-
T Consensus 93 ~ 93 (97)
T 2fqp_A 93 E 93 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 61
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=98.98 E-value=2e-09 Score=100.76 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=67.8
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.+.++++.||+...+|||...+++||++|++.+.+ +..++.|++||+++||+|++|.+.|++ ++++.+++++
T Consensus 51 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v----~g~~~~l~~GD~i~ip~g~~H~~~n~~-~~~~~~l~i~ 125 (166)
T 3jzv_A 51 LTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV----GRAVSAVAPYDLVTIPGWSWHQFRAPA-DEALGFLCMV 125 (166)
T ss_dssp CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEECCT-TSCEEEEEEE
T ss_pred CeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence 34556667999999999999999999999999999877 456899999999999999999999987 5789999888
Q ss_pred ecC
Q 040805 257 KSI 259 (540)
Q Consensus 257 ~~~ 259 (540)
.+.
T Consensus 126 ~~~ 128 (166)
T 3jzv_A 126 NAE 128 (166)
T ss_dssp ESS
T ss_pred ccC
Confidence 543
No 62
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=98.98 E-value=2.6e-09 Score=93.69 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=64.7
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.+.+.++.+.||+...+|+|...+++||++|++.+.+ +...+.|++||+++||+|++|.+.|.+ + ++.++.++.
T Consensus 40 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~-~~~~l~v~~ 113 (126)
T 4e2g_A 40 NLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI----GEETRVLRPGMAYTIPGGVRHRARTFE-D-GCLVLDIFS 113 (126)
T ss_dssp SCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE----TTEEEEECTTEEEEECTTCCEEEECCT-T-CEEEEEEEE
T ss_pred CeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEECC-C-CEEEEEEEC
Confidence 3456666999999989999988999999999999887 456799999999999999999999987 3 678887775
Q ss_pred c
Q 040805 258 S 258 (540)
Q Consensus 258 ~ 258 (540)
|
T Consensus 114 p 114 (126)
T 4e2g_A 114 P 114 (126)
T ss_dssp S
T ss_pred C
Confidence 4
No 63
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=98.98 E-value=4e-09 Score=92.02 Aligned_cols=74 Identities=12% Similarity=0.194 Sum_probs=61.9
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
..+.+..+.+.||+...+|+|..++++||++|++.+.+ +..++.|++||+++||+|++|.+.|.+ +..+.++.+
T Consensus 34 ~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~~~~-~~~~~~~~v 107 (114)
T 3fjs_A 34 HRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV----DGAQRRLHQGDLLYLGAGAAHDVNAIT-NTSLLVTVV 107 (114)
T ss_dssp TTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE----TTEEEEECTTEEEEECTTCCEEEEESS-SEEEEEEEE
T ss_pred CCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCC-CcEEEEEEE
Confidence 34566677999999999999999999999999999887 456899999999999999999999986 334544433
No 64
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=98.97 E-value=2.6e-09 Score=99.26 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=77.2
Q ss_pred ccceee-cCCceEEEeccCccccccccccccceeeeeeeCCCccc-cccccCC-CeEEEEEeeEEEEEEEecCCceEEee
Q 040805 149 ESSRVT-SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFV-TPTHLDA-DAVFFVSWGQGTITVIRENNRESYNV 225 (540)
Q Consensus 149 f~~~~~-~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~-~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~~~~~l 225 (540)
+...+. ...|.++.+ .. +. .|...+.+.++++.||+.. .+|||.. +|++||++|++.+.+ +..++.|
T Consensus 18 ~p~p~~~~~~G~~~~~--l~---~~-~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~----~~~~~~l 87 (163)
T 3i7d_A 18 YPGRLNAAMDGRSSLR--LG---DA-GGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD----DQGEHPM 87 (163)
T ss_dssp CCGGGGGGGTTEEEEE--HH---HH-TTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE----TTEEEEE
T ss_pred CCCCccccCCCeEEEE--cc---cC-CCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE----CCEEEEe
Confidence 334443 446666654 11 11 2455677778899999965 6788865 799999999999887 4568999
Q ss_pred CCCcEEEECCC--CeEEEEeCCCCccEEEEEEeecCC
Q 040805 226 KRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIKSIN 260 (540)
Q Consensus 226 ~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~~~~ 260 (540)
++||+++||+| ++|++.|.+ +++++++.+..+..
T Consensus 88 ~~GD~i~ip~~~~~~H~~~n~~-~~~~~~l~v~~p~~ 123 (163)
T 3i7d_A 88 VPGDCAAFPAGDPNGHQFVNRT-DAPATFLVVGTRTP 123 (163)
T ss_dssp CTTCEEEECTTCCCCBEEECCS-SSCEEEEEEEECCS
T ss_pred CCCCEEEECCCCCcceEEEECC-CCCEEEEEEECCCC
Confidence 99999999999 999999997 56899998886554
No 65
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=98.96 E-value=4.3e-09 Score=100.34 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=66.9
Q ss_pred cceeeeeeeCCCcc------ccccccC---CCeEEEEEeeEEEEEEEec-CCceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805 178 KYRLGILIANPQTF------VTPTHLD---ADAVFFVSWGQGTITVIRE-NNRESYNVKRGDIIRVPSGNTFYVTNTDDD 247 (540)
Q Consensus 178 ~~rl~~~~l~Pggl------~~Ph~~~---A~ei~yV~~G~g~ig~V~~-~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~ 247 (540)
.+.+.++++.||+. ..+|||. .+|++||++|++.+.+-.. +....+.|++||+++||+|++|++.|++ +
T Consensus 66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g-~ 144 (190)
T 1x82_A 66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIG-D 144 (190)
T ss_dssp CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECS-S
T ss_pred CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECC-c
Confidence 45677779999998 7788874 4799999999999988543 2334689999999999999999999998 5
Q ss_pred ccEEEEEEeecC
Q 040805 248 EKLYIVKFIKSI 259 (540)
Q Consensus 248 e~l~~v~i~~~~ 259 (540)
+++++++++.+.
T Consensus 145 ~~~~~l~v~~~~ 156 (190)
T 1x82_A 145 EPFIFLAIYPAD 156 (190)
T ss_dssp SCEEEEEEEETT
T ss_pred ccEEEEEEECCC
Confidence 689999888543
No 66
>2l37_A Ribosome-inactivating protein luffin P1; hydrolase; NMR {Luffa aegyptiaca}
Probab=98.95 E-value=5.3e-10 Score=80.90 Aligned_cols=39 Identities=26% Similarity=0.757 Sum_probs=34.4
Q ss_pred CCc--hhHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHh
Q 040805 26 KDP--ELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQR 65 (540)
Q Consensus 26 ~dp--~~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~~~~~ 65 (540)
.|| +|++|+++|+++.+ +.+++++|+++|++||++++++
T Consensus 1 ~dP~~el~~C~~~C~~q~q-~~eq~q~C~qrCee~y~e~~~~ 41 (43)
T 2l37_A 1 GSPRTEYEACRVRCQVAEH-GVERQRRCQQVCEKRLREREGR 41 (43)
T ss_dssp CCCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhcc
Confidence 489 79999999999999 6677789999999999998643
No 67
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=98.94 E-value=6.9e-09 Score=94.63 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=74.7
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceE-EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRES-YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~-~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+.+..+.+.||+...+|+|+..+++||++|++.+.+ +... +.|++||+++||+|++|++.|.+ ++++.++++.
T Consensus 47 ~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~----~~~~~~~l~~Gd~i~ip~~~~H~~~n~~-~~~~~~l~v~ 121 (147)
T 2f4p_A 47 NTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE----RGKPARILKKGDVVEIPPNVVHWHGAAP-DEELVHIGIS 121 (147)
T ss_dssp SCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE----TTSCCEEEETTCEEEECTTCCEEEEEBT-TBCEEEEEEE
T ss_pred cEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEE----CCEEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence 3455566999999888999988999999999999887 3344 89999999999999999999987 5689888877
Q ss_pred ecCCCCCcccccccCCCCCcccccccCCHHHHHHh
Q 040805 257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESA 291 (540)
Q Consensus 257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~A 291 (540)
.+.. +. ...|+..++.+.+.++
T Consensus 122 ~~~~--~~-----------~~~wl~~v~~e~~~~~ 143 (147)
T 2f4p_A 122 TQVH--LG-----------PAEWLGSVTEEEYRKA 143 (147)
T ss_dssp CCGG--GC-----------CCEECCCCCHHHHHHH
T ss_pred ccCC--CC-----------CceecccCCHHHhhhc
Confidence 4321 10 1267777777666544
No 68
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=98.94 E-value=5e-09 Score=92.09 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=63.5
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.+..+++.||....+|||+..+++||++|++.+.+ +..++.|++||+++||+|.+|.+.|.+ ++++.++++.
T Consensus 34 ~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i----~~~~~~l~~Gd~~~i~~~~~H~~~~~~-~~~~~~~~i~ 106 (128)
T 4i4a_A 34 FGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI----NDEDFPVTKGDLIIIPLDSEHHVINNN-QEDFHFYTIW 106 (128)
T ss_dssp SEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred cEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE----CCEEEEECCCcEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence 444555899999989999999999999999999888 557899999999999999999999987 4578877665
No 69
>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X
Probab=98.92 E-value=9.9e-10 Score=90.56 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=54.7
Q ss_pred cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCC
Q 040805 150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENN 219 (540)
Q Consensus 150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~ 219 (540)
...+.+.+|++..++. .+.|.|+ ||+..|+ .+.|||+++|||| +|++|+||++|++++++|++.+
T Consensus 10 ~p~~~n~~G~~~~~~~--~~~P~Ln~lgls~~r~---~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g 77 (79)
T 1dgw_X 10 DPIYSNNYGKLYEITP--EKNSQLRDLDILLNCL---QMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ 77 (79)
T ss_dssp CCSEECSSEEEEEECT--TTCHHHHTTTEEEEEE---EECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred CCCccCCCCcEEEECh--hhCcccCcCCcceEEE---EEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence 3567899999988843 3458888 6677777 9999999999996 8999999999999999999875
No 70
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=98.91 E-value=1.3e-08 Score=87.70 Aligned_cols=74 Identities=11% Similarity=-0.028 Sum_probs=62.6
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
+.+..+.+.||+...+|+|+..+++||++|++.+.+ +...+.|++||+++||+|++|.+.|.+ ++.++.++.|
T Consensus 34 ~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~v~~p 106 (116)
T 2pfw_A 34 LMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV----DGVIKVLTAGDSFFVPPHVDHGAVCPT---GGILIDTFSP 106 (116)
T ss_dssp EEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEESS---CEEEEEEEES
T ss_pred eEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE----CCEEEEeCCCCEEEECcCCceeeEeCC---CcEEEEEECC
Confidence 455666999999888898999999999999998887 456899999999999999999999986 4667777744
Q ss_pred C
Q 040805 259 I 259 (540)
Q Consensus 259 ~ 259 (540)
.
T Consensus 107 ~ 107 (116)
T 2pfw_A 107 A 107 (116)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=98.90 E-value=1.9e-07 Score=92.08 Aligned_cols=183 Identities=10% Similarity=0.119 Sum_probs=113.3
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.++++.+ .|......| ..+|++||++|+.+|+. +.....+++||+++||+|+.+-+...+ .-.+ +++.+
T Consensus 45 ~~~~~G~~~~-~g~~~v~~~-p~dE~~~VleG~~~lt~----~g~~~~~~~Gd~~~ip~G~~~~w~~~~-~~~~-~y~~~ 116 (238)
T 3myx_A 45 QGIAAGIVEF-GTALSVEAY-PYTEMLVMHRGSVTLTS----GTDSVTLSTGESAVIGRGTQVRIDAQP-ESLW-AFCAS 116 (238)
T ss_dssp TSEEEEEEEE-CSEEEESSC-SSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTCCEEEEECT-TEEE-EEEEE
T ss_pred CCeEEEEEEe-ccccccccC-CCcEEEEEEEeEEEEEC----CCeEEEEcCCCEEEECCCCEEEEEecC-CeEE-EEEec
Confidence 4567777888 776655333 34899999999999886 357889999999999999999998875 2222 22233
Q ss_pred ec-CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805 257 KS-INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA 335 (540)
Q Consensus 257 ~~-~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~ 335 (540)
+ ...|. ..| |+.+..+. .|.|. + .
T Consensus 117 -~~~~~p~-------------------------------------------~~~-~~~i~~~~--~l~P~--~---~--- 141 (238)
T 3myx_A 117 -TQASGPD-------------------------------------------KSG-ITALDRLA--LLTPS--S---P--- 141 (238)
T ss_dssp -CSCCSCC-------------------------------------------CCS-EEEECTTC--CCEEE--C---C---
T ss_pred -cCCCCCC-------------------------------------------CCc-cEEecCCC--CCCCC--C---C---
Confidence 2 11121 112 44442211 12221 0 0
Q ss_pred CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805 336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415 (540)
Q Consensus 336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~ 415 (540)
..+=.|.+.+|.... + .+... + +-.+++..-..+||..+. |+-..+|+.||++|+..++. .++
T Consensus 142 ---p~p~~~l~G~P~~~~---~--~~~~~--~---~g~~~~GiW~~tpG~~~~--~~~~~~E~~~ILeG~v~lt~--~~G 204 (238)
T 3myx_A 142 ---PDPSIMISPLPQCRS---N--NLFED--T---ASTLRIGVWDSTPYERIS--RPHKIHELMNLIEGRVVLSL--ENG 204 (238)
T ss_dssp ---CCGGGBSSCCCCEEE---E--EEEEC--S---SSSCEEEEEEECCEEBCC--EECSSCEEEEEEECCEEEEE--TTS
T ss_pred ---CChhheecCCchhee---e--EEEEC--C---CCCEEEeEEEeCCCEEEC--CcCCCCEEEEEEEeEEEEEe--CCC
Confidence 011233445554321 1 11111 1 124778888889988443 22368899999999998873 233
Q ss_pred CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
+. ..+++||+++||+|+...+.-.
T Consensus 205 ----------------------~~--~~~~aGD~~~~P~G~~~tWev~ 228 (238)
T 3myx_A 205 ----------------------SS--LTVNTGDTVFVAQGAPCKWTST 228 (238)
T ss_dssp ----------------------CE--EEECTTCEEEECTTCEEEEEES
T ss_pred ----------------------CE--EEECCCCEEEECCCCEEEEEEC
Confidence 22 3699999999999999876554
No 72
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=8.5e-09 Score=90.38 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=65.5
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+.++.|.||+...+|||+...++.||++|++.+.+- ++ +. ..|++||+++|
T Consensus 38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~----------------------~~--~~l~~Gd~~~i 91 (125)
T 3h8u_A 38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NG----------------------IV--THLKAGDIAIA 91 (125)
T ss_dssp SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TT----------------------CE--EEEETTEEEEE
T ss_pred CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CC----------------------eE--EEeCCCCEEEE
Confidence 578899999999999999999889999999999988641 12 12 36999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
|+|.+|++.|.+++++.++++.+.
T Consensus 92 ~~~~~H~~~n~~~~~~~~l~v~~p 115 (125)
T 3h8u_A 92 KPGQVHGAMNSGPEPFIFVSVVAP 115 (125)
T ss_dssp CTTCCCEEEECSSSCEEEEEEEES
T ss_pred CCCCEEEeEeCCCCCEEEEEEECC
Confidence 999999999988899998877544
No 73
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=98.89 E-value=1.1e-08 Score=89.90 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=64.2
Q ss_pred ccceeeeeeeCCCcccc-ccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 177 EKYRLGILIANPQTFVT-PTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~-Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
..+.+.++.+.||+... ||+|+..++ +||++|++.+.+ +...+.|++||+++||+|.+|.+.|.+ ++++.+++
T Consensus 24 ~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~~~~-~~~~~~~~ 98 (125)
T 3cew_A 24 TGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI----DGEKIELQAGDWLRIAPDGKRQISAAS-DSPIGFLC 98 (125)
T ss_dssp SSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE----TTEEEEEETTEEEEECTTCCEEEEEBT-TBCEEEEE
T ss_pred CCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEEEcCC-CCCEEEEE
Confidence 44556667999999877 798887655 559999999887 457899999999999999999999987 46788887
Q ss_pred EeecCC
Q 040805 255 FIKSIN 260 (540)
Q Consensus 255 i~~~~~ 260 (540)
+..+..
T Consensus 99 i~~~~~ 104 (125)
T 3cew_A 99 IQVKAG 104 (125)
T ss_dssp EEEETT
T ss_pred EEcCCc
Confidence 775543
No 74
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=98.88 E-value=1.6e-08 Score=91.97 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=68.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+.+.||+...+|||+...+++||++|++.+.+-..... ..+...|.+||+++|
T Consensus 42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~---------------------~~~~~~l~~Gd~i~i 100 (148)
T 2oa2_A 42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDN---------------------LHFQEEVFDDYAILI 100 (148)
T ss_dssp SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTB---------------------CCEEEEEETTCEEEE
T ss_pred ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccc---------------------ceeeEEECCCCEEEE
Confidence 57788999999999999999988899999999999987543210 113357999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
|+|.+|.+.|.+++++.++++...
T Consensus 101 p~g~~H~~~n~~~~~~~~l~i~~~ 124 (148)
T 2oa2_A 101 PAGTWHNVRNTGNRPLKLYSIYAP 124 (148)
T ss_dssp CTTCEEEEEECSSSCEEEEEEEES
T ss_pred CCCCcEEEEECCCCCEEEEEEECC
Confidence 999999999988888888776444
No 75
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=98.88 E-value=4.6e-09 Score=92.91 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=64.0
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
+.+..+.+.||+...+|+|+..+++||++|++++.+ +..++.|++||+++||+|.+|.+.|.+ ++++.+++++.+
T Consensus 48 ~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~g~~H~~~~~~-~~~~~~l~v~~~ 122 (126)
T 1vj2_A 48 FVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK----EQGEETVEEGFYIFVEPNEIHGFRNDT-DSEVEFLCLIPK 122 (126)
T ss_dssp EEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTCCEEEECCS-SSCEEEEEEEEG
T ss_pred EEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEEcc
Confidence 345555999999888999999999999999998876 456799999999999999999999987 467888877743
No 76
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=98.87 E-value=1.8e-08 Score=96.07 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=69.5
Q ss_pred cceEEEEEEcCCCc------ccccccC--CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805 373 DITVSYANISKGAM------AAPFYNS--RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI 444 (540)
Q Consensus 373 ~isv~~~~L~pggm------~~PH~h~--~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 444 (540)
++.+..+.|.||+. ..+|||+ +..++.||++|++.+.+-...+ +.+...|
T Consensus 66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g----------------------~~~~~~l 123 (190)
T 1x82_A 66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEG----------------------DAKWISM 123 (190)
T ss_dssp CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTC----------------------CEEEEEE
T ss_pred CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCC----------------------cEEEEEE
Confidence 57788889999998 7799998 5689999999999999876533 3445689
Q ss_pred CCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
++||+++||+|.+|++.|.+++++.++++...
T Consensus 124 ~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~ 155 (190)
T 1x82_A 124 EPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPA 155 (190)
T ss_dssp CTTCEEEECTTCEEEEEECSSSCEEEEEEEET
T ss_pred CCCcEEEECCCCeEEEEECCcccEEEEEEECC
Confidence 99999999999999999988899998876433
No 77
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=98.87 E-value=1.3e-08 Score=87.52 Aligned_cols=71 Identities=17% Similarity=0.310 Sum_probs=60.0
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.+..+.+.||....+|+|+..+++||++|++.+.+ +...+.|++||+++||+|.+|++.|.+ ++.+++++
T Consensus 40 ~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~~~v~ 110 (115)
T 1yhf_A 40 LGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI----DQETYRVAEGQTIVMPAGIPHALYAVE---AFQMLLVV 110 (115)
T ss_dssp EEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTSCEEEEESS---CEEEEEEE
T ss_pred eEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC---CceEEEEE
Confidence 345566899999888999999999999999998887 456799999999999999999999986 35555555
No 78
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=98.87 E-value=1.9e-08 Score=83.96 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=66.5
Q ss_pred cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805 371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY 450 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~ 450 (540)
.-++.+..+.+.||+...+|||+...++.||++|++.+.+- + +. ..|++||++
T Consensus 25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~---~----------------------~~--~~l~~Gd~~ 77 (105)
T 1v70_A 25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG---E----------------------EE--ALLAPGMAA 77 (105)
T ss_dssp ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET---T----------------------EE--EEECTTCEE
T ss_pred CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC---C----------------------EE--EEeCCCCEE
Confidence 33688999999999999999998888999999999998751 2 22 379999999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEEe
Q 040805 451 IVPAGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 451 vVPaG~~h~~~n~~~e~l~~v~F~~ 475 (540)
+||+|.+|.+.|.+++++.++.+.+
T Consensus 78 ~ip~~~~H~~~~~~~~~~~~~~v~~ 102 (105)
T 1v70_A 78 FAPAGAPHGVRNESASPALLLVVTA 102 (105)
T ss_dssp EECTTSCEEEECCSSSCEEEEEEEE
T ss_pred EECCCCcEEeEeCCCCCEEEEEEeC
Confidence 9999999999998788888887644
No 79
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=98.87 E-value=8.1e-09 Score=92.34 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=62.3
Q ss_pred eeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 180 RLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
-+..+++.||+...+|+|. ..+++||++|++.+.+ +..++.|++||+++||+|.+|++.|.+ +++++++++.
T Consensus 58 ~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~n~~-~~~~~~l~v~ 130 (133)
T 1o4t_A 58 LFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD----NGKDVPIKAGDVCFTDSGESHSIENTG-NTDLEFLAVI 130 (133)
T ss_dssp EEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEE
T ss_pred EEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE----CCEEEEeCCCcEEEECCCCcEEeEECC-CCCEEEEEEE
Confidence 3455699999988888886 6899999999999887 557899999999999999999999987 4688888775
No 80
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=98.86 E-value=1.2e-08 Score=96.68 Aligned_cols=77 Identities=9% Similarity=-0.024 Sum_probs=61.9
Q ss_pred ceeeeeeeCCCcccc---ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC-CCCccEEEEE
Q 040805 179 YRLGILIANPQTFVT---PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT-DDDEKLYIVK 254 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~---Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~-g~~e~l~~v~ 254 (540)
+.+..+++.||+... +|||+..|++||++|++.+.+=..+....+.|++||+++||+|++|++.|. + ++++++++
T Consensus 117 ~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~-~~~~~~l~ 195 (198)
T 2bnm_A 117 LVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKG-TGSAKLIA 195 (198)
T ss_dssp CEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTT-SCCEEEEE
T ss_pred ceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCceEEEecCC-CCCeEEEE
Confidence 444555999998876 577888999999999999887111112789999999999999999999998 7 46888887
Q ss_pred Ee
Q 040805 255 FI 256 (540)
Q Consensus 255 i~ 256 (540)
++
T Consensus 196 v~ 197 (198)
T 2bnm_A 196 VN 197 (198)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 81
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=98.85 E-value=1.9e-08 Score=92.60 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=67.7
Q ss_pred cceEEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 373 DITVSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
++.+..+.|.||+ ...+|||+...+++||++|++.+.+- + +. ..|++||+++
T Consensus 45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~---~----------------------~~--~~l~~Gd~i~ 97 (162)
T 3l2h_A 45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME---N----------------------DQ--YPIAPGDFVG 97 (162)
T ss_dssp SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET---T----------------------EE--EEECTTCEEE
T ss_pred eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC---C----------------------EE--EEeCCCCEEE
Confidence 6889999999999 58999999999999999999999841 1 22 4799999999
Q ss_pred ECCC-CeEEEEecCCCCEEEEEEEecC
Q 040805 452 VPAG-HPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 452 VPaG-~~h~~~n~~~e~l~~v~F~~~a 477 (540)
||+| .+|++.|.+++++.++++.+..
T Consensus 98 i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 98 FPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 9998 9999999888999998876554
No 82
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=98.85 E-value=1.1e-08 Score=90.30 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=61.3
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.++++.+.||+-... |.+.+|++||++|++++.+ +..++.|++||+++||+|+.|++.|.+ ++++++.+.
T Consensus 38 ~~~~~~~~~~~pG~~~~~-H~~~~E~~~Vl~G~~~~~~----~g~~~~l~~GD~v~ip~g~~H~~~~~~--~~~~~l~v~ 110 (119)
T 3lwc_A 38 GPITIGYGRYAPGQSLTE-TMAVDDVMIVLEGRLSVST----DGETVTAGPGEIVYMPKGETVTIRSHE--EGALTAYVT 110 (119)
T ss_dssp CCCEEEEEEECTTCEEEE-ECSSEEEEEEEEEEEEEEE----TTEEEEECTTCEEEECTTCEEEEEEEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCCcCc-cCCCCEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCEEEEEcCC--CCeEEEEEE
Confidence 345677779999986433 4489999999999999987 456899999999999999999998875 467777666
Q ss_pred ecC
Q 040805 257 KSI 259 (540)
Q Consensus 257 ~~~ 259 (540)
.|.
T Consensus 111 ~P~ 113 (119)
T 3lwc_A 111 YPH 113 (119)
T ss_dssp ECC
T ss_pred CCC
Confidence 544
No 83
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=98.84 E-value=2.6e-09 Score=91.25 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.+|+..++++||+.+..|+|. ..+++||++|++++.. +++. ....|++||+++||+|+.|.+.|+| +.+|+||-+
T Consensus 16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g-~~pl~~IeV 92 (98)
T 3lag_A 16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSYARKAGVQHDVRNES-TAEIVFLEI 92 (98)
T ss_dssp SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCEEECTTCEEEEBCCS-SSCEEEEEE
T ss_pred eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEEEEcCCCcEECEECC-CCeEEEEEE
Confidence 466667799999998888775 4577788899987654 4433 5678999999999999999999998 579999876
No 84
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=98.83 E-value=1.2e-08 Score=96.37 Aligned_cols=76 Identities=11% Similarity=0.067 Sum_probs=62.1
Q ss_pred ceeeeeeeCCCcccc--ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 179 YRLGILIANPQTFVT--PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~--Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.+..+++.||+... +||+...|++||++|++.+.+ +..++.|++||+++||+|++|++.|.+ ++++ +++++
T Consensus 104 ~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~GD~i~i~~~~~H~~~n~~-~~~~-~l~v~ 177 (192)
T 1y9q_A 104 LEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DEQWHELQQGEHIRFFSDQPHGYAAVT-EKAV-FQNIV 177 (192)
T ss_dssp EEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TTEEEEECTTCEEEEECSSSEEEEESS-SCEE-EEEEE
T ss_pred EEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE----CCEEEEeCCCCEEEEcCCCCeEeECCC-CCcE-EEEEE
Confidence 344455999998765 566778999999999999887 567899999999999999999999997 4678 77777
Q ss_pred ecCC
Q 040805 257 KSIN 260 (540)
Q Consensus 257 ~~~~ 260 (540)
.+..
T Consensus 178 ~~~~ 181 (192)
T 1y9q_A 178 AYPR 181 (192)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 5543
No 85
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=98.82 E-value=1.6e-08 Score=88.09 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=53.3
Q ss_pred CCccccc---cccCCCeEEEEEeeEEEEEEEecCCceE--EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 188 PQTFVTP---THLDADAVFFVSWGQGTITVIRENNRES--YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 188 Pggl~~P---h~~~A~ei~yV~~G~g~ig~V~~~~~~~--~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+|....+ +|++.+|++||++|++++.+ +... +.|++||.++||+|++|.+.|++++.++++++++.
T Consensus 39 ~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~----~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~ 109 (112)
T 2opk_A 39 NGQASPPGFWYDSPQDEWVMVVSGSAGIEC----EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC 109 (112)
T ss_dssp SSCCCCTTCCBCCSSEEEEEEEESCEEEEE----TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred CCccCCCCccccCCccEEEEEEeCeEEEEE----CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence 3444444 55688999999999999887 3345 89999999999999999999998555787788774
No 86
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.2e-08 Score=95.60 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=67.2
Q ss_pred cCCceEEEeccCccccccccccccceeeeeeeCC-Cccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEE
Q 040805 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANP-QTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR 232 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~P-ggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~ 232 (540)
+..+.+++..-|++... .+-..+++|.| |+...|++ |++++++||++|++.+++ +..++.|.+||.++
T Consensus 70 ~~~~~~~fa~~fs~~~~------~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl----~g~~~~L~~Gds~~ 139 (166)
T 2vpv_A 70 TKDENFALEIMFDKHKE------YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV----CKNKFLSVKGSTFQ 139 (166)
T ss_dssp ---CBCCCCEECCTTTC------SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE----TTEEEEEETTCEEE
T ss_pred CCCCCEEEEEeecCCcc------cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE----CCEEEEEcCCCEEE
Confidence 34455555444443222 23344558999 77666655 579999999999999998 66899999999999
Q ss_pred ECCCCeEEEEeCCCCccEEEEEEe
Q 040805 233 VPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 233 iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
||+|.+|.+.|.+ +++++++.+.
T Consensus 140 iP~g~~H~~~N~~-d~~Arll~Vq 162 (166)
T 2vpv_A 140 IPAFNEYAIANRG-NDEAKMFFVQ 162 (166)
T ss_dssp ECTTCEEEEEECS-SSCEEEEEEE
T ss_pred ECCCCCEEEEECC-CCCEEEEEEE
Confidence 9999999999998 4678777654
No 87
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=98.80 E-value=2.3e-08 Score=104.32 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=72.3
Q ss_pred CCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECC
Q 040805 156 QHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS 235 (540)
Q Consensus 156 e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPa 235 (540)
+++.++.++..+. .+.++ .+...+..|.||+...||+|..++|+||++|+|+++| +.+++++++||+++||+
T Consensus 249 ~G~~~~~~np~t~-~~~~~---ti~~~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v----~~~~~~~~~GD~~~vP~ 320 (354)
T 2d40_A 249 DGYKMRYVNPVTG-GYPMP---SMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVII----GNETFSFSAKDIFVVPT 320 (354)
T ss_dssp TBEEEEECCTTTS-SCSSS---SCEEEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECT
T ss_pred CCeEEEEeCCCcC-CCCCC---cceeEEEEECCCCCCCceecCCcEEEEEEeCeEEEEE----CCEEEEEcCCCEEEECC
Confidence 4667777754321 12333 3455566999999999999977799999999999998 45889999999999999
Q ss_pred CCeEEEEeCCCCccEEEEEEee
Q 040805 236 GNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 236 G~~h~~~N~g~~e~l~~v~i~~ 257 (540)
++.|++.|+ ++++++++.|
T Consensus 321 ~~~H~~~n~---e~~~l~~~~d 339 (354)
T 2d40_A 321 WHGVSFQTT---QDSVLFSFSD 339 (354)
T ss_dssp TCCEEEEEE---EEEEEEEEES
T ss_pred CCeEEEEeC---CCEEEEEEcC
Confidence 999999994 4788887753
No 88
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=98.80 E-value=2.1e-08 Score=100.55 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=68.3
Q ss_pred ccceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
..+-+.+++++||+.... |+|..++.+||++|+|++.+ +...+.|++||++++|++.+||+.|+| +++|++| +
T Consensus 184 ~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l----~~~~~~V~~GD~i~~~~~~~h~~~n~G-~e~~~yl-~ 257 (266)
T 4e2q_A 184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL----GDNWYPVQAGDVIWMAPFVPQWYAALG-KTRSRYL-L 257 (266)
T ss_dssp CSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEE-E
T ss_pred cceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC-CCCEEEE-E
Confidence 467788899999999875 55778899999999999987 667899999999999999999999998 5799998 4
Q ss_pred eecCCC
Q 040805 256 IKSINL 261 (540)
Q Consensus 256 ~~~~~~ 261 (540)
..+.|.
T Consensus 258 ykd~nr 263 (266)
T 4e2q_A 258 YKDVNR 263 (266)
T ss_dssp EEECSS
T ss_pred EccccC
Confidence 556664
No 89
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=98.80 E-value=1.8e-08 Score=89.47 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=58.4
Q ss_pred eeeeeeCCCccccccccCC-CeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 181 LGILIANPQTFVTPTHLDA-DAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
+..+.+.||+...+|+|+. .+++||++|++.+.+ +. ..+.|++||+++||+|++|++.|.++ ++.+++++.+
T Consensus 45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~----~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~--~~~~l~~~~p 118 (134)
T 2o8q_A 45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY----EDIGAVMLEAGGSAFQPPGVRHRELRHSD--DLEVLEIVSP 118 (134)
T ss_dssp EEEECC-----CCCEEECCSCEEEEEEESEEEEEE----TTTEEEEEETTCEEECCTTCCEEEEEECT--TCEEEEEESS
T ss_pred EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE----CCcEEEEecCCCEEEECCCCcEEeEeCCC--CeEEEEEECC
Confidence 3333556888888888875 999999999998887 33 78999999999999999999999764 3677766644
Q ss_pred CCCCCcccccccC
Q 040805 259 INLPGQYEAFYGA 271 (540)
Q Consensus 259 ~~~pg~~~~f~La 271 (540)
. .+..+|+.
T Consensus 119 ~----~~~~~~~~ 127 (134)
T 2o8q_A 119 A----GFATSVVD 127 (134)
T ss_dssp T----TCCEEECC
T ss_pred C----chheeehh
Confidence 3 34445543
No 90
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=98.80 E-value=4.7e-08 Score=83.15 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=66.8
Q ss_pred cccceEEEEEEcCCCccccc--ccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCc
Q 040805 371 DLDITVSYANISKGAMAAPF--YNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~~PH--~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD 448 (540)
.-++.+..+.+.||+...+| ||++..+++||++|++.+.+ ++ +. ..|++||
T Consensus 18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd 70 (113)
T 2gu9_A 18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DG----------------------HT--QALQAGS 70 (113)
T ss_dssp ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TT----------------------EE--EEECTTE
T ss_pred CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CC----------------------EE--EEeCCCC
Confidence 34688999999999999988 99879999999999999886 22 22 3799999
Q ss_pred EEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 449 AYIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 449 V~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
+++||+|.+|.+.|.+++++.++.+...
T Consensus 71 ~~~i~~~~~H~~~~~~~~~~~~~~v~~~ 98 (113)
T 2gu9_A 71 LIAIERGQAHEIRNTGDTPLKTVNFYHP 98 (113)
T ss_dssp EEEECTTCCEEEECCSSSCEEEEEEEES
T ss_pred EEEECCCCcEEeEcCCCCCEEEEEEECC
Confidence 9999999999999987888888776443
No 91
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=98.79 E-value=1e-08 Score=96.61 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=65.9
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
...+.+++|.||+...+|+|...+++||++|++.+.+ +..+++.|++||++ ||+|++|.+.|.+ ++++++++++.
T Consensus 78 G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l---d~ge~~~L~~GDsi-~~~g~~H~~~N~g-~~~ar~l~V~~ 152 (172)
T 3es1_A 78 GSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL---DDGAKRTVRQGGII-VQRGTNHLWRNTT-DKPCRIAFILI 152 (172)
T ss_dssp SEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC---GGGCEEEECTTCEE-EECSCCBEEECCS-SSCEEEEEEEE
T ss_pred CeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE---CCCeEEEECCCCEE-EeCCCcEEEEeCC-CCCEEEEEEEc
Confidence 3445566999999988888888899999999998876 22467999999999 9999999999998 56899999886
Q ss_pred cCC
Q 040805 258 SIN 260 (540)
Q Consensus 258 ~~~ 260 (540)
+..
T Consensus 153 P~~ 155 (172)
T 3es1_A 153 EAP 155 (172)
T ss_dssp ECC
T ss_pred CCC
Confidence 554
No 92
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=98.77 E-value=2.9e-08 Score=85.59 Aligned_cols=71 Identities=11% Similarity=0.294 Sum_probs=60.3
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.+.++.+.||....+|+|...+++||++|++.+.+ +..++.|++||+++||+|++|.+.|.+ ++.++.+.
T Consensus 38 ~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~~~~---~~~~~~i~ 108 (114)
T 2ozj_A 38 VQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF----DDQKIDLVPEDVLMVPAHKIHAIAGKG---RFKMLQIT 108 (114)
T ss_dssp EEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE----TTEEEEECTTCEEEECTTCCBEEEEEE---EEEEEEEE
T ss_pred ceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC---CcEEEEEE
Confidence 446666789998888899999999999999999887 557899999999999999999999963 56666555
No 93
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=98.77 E-value=1.4e-08 Score=86.93 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=58.0
Q ss_pred ccceeeeeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 177 EKYRLGILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
..+++..++|.||+....|.|..+ .++|+++|++ .+...++. ....|++||++++|+|..|++.|.| +++|++|.
T Consensus 15 ~~v~v~~~~l~PG~~~~~H~H~~~~~iv~v~~G~~--~~~~~dG~~~~~~l~aGd~~~~p~G~~H~~~N~g-~~~l~fi~ 91 (98)
T 2ozi_A 15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEM--TIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNES-TAEIVFLE 91 (98)
T ss_dssp SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC---CEECTTSCEECCCBCTTCCEEECTTCEEEEEECS-SSCEEEEE
T ss_pred CcEEEEEEEECCCCccCcEeCCCCEEEEEEeeEEE--EEEeCCCcEEEEEECCCCEEEECCCCceeCEECC-CCCEEEEE
Confidence 357788889999998765556544 3334456555 55555655 4679999999999999999999998 56999998
Q ss_pred Ee
Q 040805 255 FI 256 (540)
Q Consensus 255 i~ 256 (540)
+-
T Consensus 92 vE 93 (98)
T 2ozi_A 92 IE 93 (98)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 94
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=98.76 E-value=2.4e-08 Score=92.09 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=67.7
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+.|.||+...+|||+ ..+++||++|++.+.+-...... . . +.-...|++||+++|
T Consensus 40 ~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~-------~---------~--~~~~~~l~~Gd~i~i 100 (163)
T 1lr5_A 40 EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKY-------P---------G--QPQEIPFFQNTTFSI 100 (163)
T ss_dssp SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSS-------C---------C--SCEEEEECTTEEEEE
T ss_pred cEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccc-------c---------C--ccEEEEeCCCCEEEE
Confidence 588899999999999999995 67899999999999876532100 0 0 112247999999999
Q ss_pred CCCCeEEEEecC-CCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQ-NNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~-~e~l~~v~F~~~ 476 (540)
|+|.+|.+.|.+ ++++.++++...
T Consensus 101 p~~~~H~~~n~~~~~~~~~l~i~~~ 125 (163)
T 1lr5_A 101 PVNDPHQVWNSDEHEDLQVLVIISR 125 (163)
T ss_dssp CTTCCEEEECCCSSSCEEEEEEEES
T ss_pred CCCCcEEeEeCCCCCCEEEEEEECC
Confidence 999999999988 888998877544
No 95
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=98.75 E-value=2.3e-08 Score=98.59 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=66.0
Q ss_pred ceeeeeeeCC-CccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 179 YRLGILIANP-QTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 179 ~rl~~~~l~P-ggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+.+.++++.| |+...+|+|...+++||++|++.+.+ +...+.|++||+++||+|.+|.+.|.+ +++++++.++.
T Consensus 145 ~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~n~~-~~~~~~l~v~~ 219 (243)
T 3h7j_A 145 VEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV----EGCTVEMKFGTAYFCEPREDHGAINRS-EKESKSINIFF 219 (243)
T ss_dssp EEEEEEEECTTTEEEEEECCSSEEEEEECSSCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECS-SSCEEEEEEEE
T ss_pred eEEEEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEEc
Confidence 4566778999 88778888888999999999999887 457889999999999999999999998 56899998886
Q ss_pred cC
Q 040805 258 SI 259 (540)
Q Consensus 258 ~~ 259 (540)
|.
T Consensus 220 p~ 221 (243)
T 3h7j_A 220 PP 221 (243)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 96
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=98.75 E-value=1e-08 Score=101.40 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=61.0
Q ss_pred ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEe---cC-Cce------------EEeeCCCcEEEECCCCeEEE
Q 040805 179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIR---EN-NRE------------SYNVKRGDIIRVPSGNTFYV 241 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~---~~-~~~------------~~~l~~GDv~~iPaG~~h~~ 241 (540)
+.+..+++.||+...||+|. .+|++||++|++.+.+-. ++ +.. ++.+++||+++||+|++|++
T Consensus 43 ~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~ 122 (239)
T 2xlg_A 43 FAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGF 122 (239)
T ss_dssp EEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEE
T ss_pred EEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEE
Confidence 44555699999988999876 899999999999886510 00 122 78999999999999999999
Q ss_pred EeCCCCccEEE-EEEe
Q 040805 242 TNTDDDEKLYI-VKFI 256 (540)
Q Consensus 242 ~N~g~~e~l~~-v~i~ 256 (540)
.|.++ +++++ +.++
T Consensus 123 ~N~~~-~~~~~~l~~~ 137 (239)
T 2xlg_A 123 VNPTD-KTLPIVFVWM 137 (239)
T ss_dssp ECCSS-SCEEEEEEEE
T ss_pred EeCCC-CCEEEEEEEE
Confidence 99984 67887 5555
No 97
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=98.75 E-value=6.1e-08 Score=89.39 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=61.1
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.+.++++++. ++- .|+|++.+|++||++|++.+.+ +..++.|++||+++||+|+.|.+.|. ++++++++..
T Consensus 65 ~~s~g~~~~e-~~~-~~~~~~~eE~~yVLeG~~~l~i----~g~~~~l~~GD~i~iP~G~~h~~~n~---~~a~~l~V~~ 135 (151)
T 4axo_A 65 RLGCGMMEMK-ETT-FDWTLNYDEIDYVIDGTLDIII----DGRKVSASSGELIFIPKGSKIQFSVP---DYARFIYVTY 135 (151)
T ss_dssp SCEEEEEEEE-EEE-EEEECSSEEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCEEEEEEE---EEEEEEEEEE
T ss_pred cEEEEEEEEc-Ccc-ccEeCCCcEEEEEEEeEEEEEE----CCEEEEEcCCCEEEECCCCEEEEEeC---CCEEEEEEEC
Confidence 4566777776 333 5566789999999999999986 44689999999999999999999996 4688888887
Q ss_pred cCCCC
Q 040805 258 SINLP 262 (540)
Q Consensus 258 ~~~~p 262 (540)
|...+
T Consensus 136 P~~~~ 140 (151)
T 4axo_A 136 PADWA 140 (151)
T ss_dssp CSCC-
T ss_pred CCCcc
Confidence 76654
No 98
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=98.74 E-value=3.7e-08 Score=83.65 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=59.2
Q ss_pred cceeeeeeeCCCccccccccCC-CeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDA-DAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A-~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.+.+..+.+.||....+|+|+. .++ +||++|++.+.+ ++..++.|++||+++||+|.+|++.|.++ ..++.+
T Consensus 32 ~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~---~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~---~~~l~~ 105 (110)
T 2q30_A 32 NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG---DGDAVIPAPRGAVLVAPISTPHGVRAVTD---MKVLVT 105 (110)
T ss_dssp SCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC---GGGCEEEECTTEEEEEETTSCEEEEESSS---EEEEEE
T ss_pred CEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe---CCCEEEEECCCCEEEeCCCCcEEEEEcCC---cEEEEE
Confidence 3455666899999888888875 688 899999998876 21468999999999999999999999862 455555
Q ss_pred eec
Q 040805 256 IKS 258 (540)
Q Consensus 256 ~~~ 258 (540)
+.|
T Consensus 106 ~~p 108 (110)
T 2q30_A 106 IAP 108 (110)
T ss_dssp EES
T ss_pred ECC
Confidence 533
No 99
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=98.72 E-value=2.1e-08 Score=99.16 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=67.6
Q ss_pred cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEE---cCCCCCCcccccccCCCccccCCccceEEeeeeCCC
Q 040805 371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIA---CPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTD 447 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G 447 (540)
+.++++..+.+.||+...||||+++.|+.||++|++.+.+- .|+... + .-......-+.+...|++|
T Consensus 40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~-------~---~~~~~~~~~~~~~~~l~~G 109 (239)
T 2xlg_A 40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDE-------L---PVVGGAGRGDLYSIQSEPK 109 (239)
T ss_dssp TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTS-------C---CSTTTTCCEEEEEEECCTT
T ss_pred CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCC-------c---ccccccccCceeEEEECCC
Confidence 34688999999999999999999999999999999999761 111000 0 0000000013445689999
Q ss_pred cEEEECCCCeEEEEecCCCCEEE-EEE
Q 040805 448 SAYIVPAGHPVVTVASQNNNLEV-VCF 473 (540)
Q Consensus 448 DV~vVPaG~~h~~~n~~~e~l~~-v~F 473 (540)
|+++||+|.+|.+.|.+++++.+ +.+
T Consensus 110 D~i~iP~g~~H~~~N~~~~~~~~~l~~ 136 (239)
T 2xlg_A 110 QLIYSPNHYMHGFVNPTDKTLPIVFVW 136 (239)
T ss_dssp EEEEECTTEEEEEECCSSSCEEEEEEE
T ss_pred CEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence 99999999999999988888777 444
No 100
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=98.72 E-value=1.3e-08 Score=86.92 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=66.0
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
-.+.+.+++|.||+-...|+|+...++.||+.|++.+.. +++. .....|++||+++
T Consensus 15 ~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~----------------------~~~~~l~~G~~~~ 70 (98)
T 3lag_A 15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGT----------------------RSLAQLKTGRSYA 70 (98)
T ss_dssp SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSC----------------------EECCCBCTTCCEE
T ss_pred CeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCc----------------------eEEEEecCCcEEE
Confidence 368899999999999999999999999999999998763 3331 1234789999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEE
Q 040805 452 VPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F 473 (540)
||+|..|.+.|.++.+|.||.+
T Consensus 71 ip~G~~H~~~N~g~~pl~~IeV 92 (98)
T 3lag_A 71 RKAGVQHDVRNESTAEIVFLEI 92 (98)
T ss_dssp ECTTCEEEEBCCSSSCEEEEEE
T ss_pred EcCCCcEECEECCCCeEEEEEE
Confidence 9999999999999999999876
No 101
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=98.71 E-value=7.4e-08 Score=96.64 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=65.1
Q ss_pred cceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+.+.++++.||+...+ |+|...+++||++|++.+.+ +...+.|++||+++||+|++|++.|.++.++++++++.
T Consensus 181 ~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i----~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~ 256 (274)
T 1sef_A 181 DMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL----DNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK 256 (274)
T ss_dssp SEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEE
Confidence 44566679999998776 88889999999999999988 55789999999999999999999999842689888765
Q ss_pred e
Q 040805 257 K 257 (540)
Q Consensus 257 ~ 257 (540)
+
T Consensus 257 ~ 257 (274)
T 1sef_A 257 D 257 (274)
T ss_dssp E
T ss_pred c
Confidence 3
No 102
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=98.71 E-value=6.4e-08 Score=89.65 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=68.7
Q ss_pred eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccC-CCeEEEEEe--eEEEEEEEecCCceEEeeCCC
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD-ADAVFFVSW--GQGTITVIRENNRESYNVKRG 228 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~--G~g~ig~V~~~~~~~~~l~~G 228 (540)
..+...|..+.+ |.. ...++ +.+..+.+++...+|||. .+|++||++ |++.+.+ +.+.+.|++|
T Consensus 27 ~~~~~~G~srR~--l~~-~~~fp------~sv~~v~~g~~~~~H~H~~~~E~~yVLe~~G~g~v~i----dge~~~l~~G 93 (157)
T 4h7l_A 27 AVACPCGWAQRA--FGH-DAGTS------VSVHYTQITKAARTHYHREHQEIYVVLDHAAHATIEL----NGQSYPLTKL 93 (157)
T ss_dssp CEEETTEEEEEE--SCG-GGCCS------CEEEEEEECSCCCCBBCSSCEEEEEEEEECTTCEEEE----TTEEEECCTT
T ss_pred CccCCCCeeeEE--eEc-CCCCc------EEEEEEeCCCCccceECCCCcEEEEEEecCcEEEEEE----CCEEEEeCCC
Confidence 456777888776 332 22222 222233445556788884 689999999 9999988 5578999999
Q ss_pred cEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 229 DIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 229 Dv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
|+++||+|+.|++.+ ++++|+++.|...+
T Consensus 94 D~v~IPpg~~H~i~g-----~l~~L~I~~Pp~~~ 122 (157)
T 4h7l_A 94 LAISIPPLVRHRIVG-----EATIINIVSPPFDP 122 (157)
T ss_dssp EEEEECTTCCEEEES-----CEEEEEEEESSCCT
T ss_pred CEEEECCCCeEeeEC-----CEEEEEEECCCCCC
Confidence 999999999999973 59999999777654
No 103
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=98.70 E-value=4.1e-08 Score=97.64 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=62.9
Q ss_pred ceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 179 YRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+.+.++++.||+...+|+| ...|++||++|++.+.+ +...+.|++||+++||+|.+|++.|.+++++++++.+.+
T Consensus 179 ~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i----~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~d 254 (261)
T 1rc6_A 179 MNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL----DNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254 (261)
T ss_dssp EEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES----SSCEEEEETTCEEEECSSEEEEEEEC----CEEEEEEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEec
Confidence 4456779999998777876 57899999999998887 457899999999999999999999998427899987764
Q ss_pred cCCC
Q 040805 258 SINL 261 (540)
Q Consensus 258 ~~~~ 261 (540)
.|.
T Consensus 255 -~~r 257 (261)
T 1rc6_A 255 -CNR 257 (261)
T ss_dssp -CSC
T ss_pred -CCC
Confidence 443
No 104
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=98.70 E-value=4.7e-08 Score=82.35 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=65.0
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..++|.||+-..+|.|+...+++||++|++.+.+-. + . -...|.+||++++
T Consensus 17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~--g----------------------~-~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE--G----------------------S-VTSQLTRGVSYTR 71 (97)
T ss_dssp SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT--E----------------------E-EEEEECTTCCEEE
T ss_pred eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC--C----------------------C-EEEEEcCCCEEEe
Confidence 6889999999999999999988778999999999987522 1 0 1246999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~ 474 (540)
|+|.+|...|.+++++.++.+.
T Consensus 72 p~~~~H~~~N~g~~~~~~l~v~ 93 (97)
T 2fqp_A 72 PEGVEHNVINPSDTEFVFVEIE 93 (97)
T ss_dssp CTTCEEEEECCSSSCEEEEEEE
T ss_pred CCCCcccCEeCCCCcEEEEEEE
Confidence 9999999999988899888764
No 105
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=98.69 E-value=4.7e-08 Score=88.07 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=59.7
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.+.++++++.|| ..|+|++.+|++||++|++.+.+ +..++.|++||+++||+|++|.+.|. +++++++++.
T Consensus 56 ~~~~~~~~~~pG--~~~~h~~~~E~~~VLeG~~~l~~----~g~~~~l~~GD~i~~p~g~~h~~~~~---~~~~~l~v~~ 126 (133)
T 2pyt_A 56 SMAAGFMQWDNA--FFPWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTP---TSVRFLYVAW 126 (133)
T ss_dssp SSEEEEEEEEEE--EEEEECSSEEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCEEEEEEE---EEEEEEEEEE
T ss_pred cEEEEEEEECCC--CccccCCCCEEEEEEECEEEEEE----CCEEEEECCCcEEEECCCCEEEEEeC---CCEEEEEEEc
Confidence 466777899999 33445578999999999999887 46788999999999999999999884 3688887775
Q ss_pred cC
Q 040805 258 SI 259 (540)
Q Consensus 258 ~~ 259 (540)
|.
T Consensus 127 p~ 128 (133)
T 2pyt_A 127 PA 128 (133)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 106
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=98.69 E-value=8e-07 Score=83.96 Aligned_cols=161 Identities=7% Similarity=-0.012 Sum_probs=99.9
Q ss_pred ccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCCCCCcCCCCCC----CCceeEcCC--CCC---c
Q 040805 281 RAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQEGPSIWPFAGE----SRGTFNLFG--KRP---S 350 (540)
Q Consensus 281 ~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~----~~~~fnL~~--~~P---~ 350 (540)
.+++..-||+..|++..++.++-.... .. +.+.|..+.......-.|=+.+. ...++-+.. ..+ .
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g~~~~p-----~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~ 96 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENGEGGEL-----TLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGV 96 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTTCTTC-----BHHHHHHHHHHTTSCTGGGSCCCCCCCBTTBCCCCGGGCCEECCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCC-----CHHHHHHHHHHhCCCHHHEEccCCCCcccCceEEeeccccccccc
Confidence 478899999999999999999987653 21 11112111110000000101111 111222222 112 2
Q ss_pred ccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccc---ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCC
Q 040805 351 HSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA---PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGS 427 (540)
Q Consensus 351 ~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~---PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~ 427 (540)
.....|..+.+-.. ......+.+..++|.||+... +|||+. .+++||++|++.+.+-....
T Consensus 97 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~~~------------ 160 (198)
T 2bnm_A 97 RDNVDYYVYNCLVR---TKRAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKEN------------ 160 (198)
T ss_dssp TTCSTTEEEEECCC---CTTSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTS------------
T ss_pred ccCCCceEEEeecc---CCCCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCcCC------------
Confidence 23445544444332 233446889999999999987 588865 89999999999998733111
Q ss_pred CccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEE
Q 040805 428 STREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCF 473 (540)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F 473 (540)
.-...|++||.++||++.+|.+.|. +++++.++++
T Consensus 161 -----------~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 161 -----------PKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp -----------CEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred -----------cccEEECCCCEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 1124799999999999999999998 8888888765
No 107
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=98.69 E-value=1.2e-07 Score=88.36 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=66.7
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.++.+..+.|.||+...+|||+ ..+++||++|++.+.+- + +. ..|++||+++
T Consensus 54 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~i~---~----------------------~~--~~l~~Gd~i~ 105 (167)
T 3ibm_A 54 PAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEVVLD---D----------------------RV--EPLTPLDCVY 105 (167)
T ss_dssp SSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEEEET---T----------------------EE--EEECTTCEEE
T ss_pred CcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEEEEC---C----------------------EE--EEECCCCEEE
Confidence 3688999999999999999995 89999999999998752 1 22 4799999999
Q ss_pred ECCCCeEEEEecC-CCCEEEEEEEecC
Q 040805 452 VPAGHPVVTVASQ-NNNLEVVCFEINA 477 (540)
Q Consensus 452 VPaG~~h~~~n~~-~e~l~~v~F~~~a 477 (540)
||+|.+|.+.|.+ ++++.++++....
T Consensus 106 ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 106 IAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp ECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred ECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 9999999999988 8899998875443
No 108
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=98.68 E-value=6.4e-08 Score=102.13 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=66.8
Q ss_pred ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..+.+.+..|.||+...||.|..++++||++|+|.+.+ +.+++.+++||+|+||+|..|.+.|++.+++++++++.
T Consensus 292 ~tl~~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V----~ge~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~ 367 (394)
T 3bu7_A 292 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV----GGKRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN 367 (394)
T ss_dssp SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred CeeeEEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE----CCEEEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEee
Confidence 34566778999999999998988899999999997776 55789999999999999999999998745689988876
Q ss_pred e
Q 040805 257 K 257 (540)
Q Consensus 257 ~ 257 (540)
+
T Consensus 368 D 368 (394)
T 3bu7_A 368 D 368 (394)
T ss_dssp S
T ss_pred C
Confidence 3
No 109
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=98.67 E-value=1.5e-07 Score=81.53 Aligned_cols=76 Identities=11% Similarity=0.223 Sum_probs=63.6
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEee-eeCCCcEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS-RIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~GDV~v 451 (540)
++.+..+.+.||+...+||| ...+++||++|++.+.+ ++ +. . .|++||+++
T Consensus 26 ~~~~~~~~~~pg~~~~~H~H-~~~e~~~Vl~G~~~~~i---~~----------------------~~--~~~l~~Gd~i~ 77 (117)
T 2b8m_A 26 HVQINHIVLPRGEQMPKHYS-NSYVHLIIIKGEMTLTL---ED----------------------QE--PHNYKEGNIVY 77 (117)
T ss_dssp SCEEEEEEEETTCBCCCEEC-SSCEEEEEEESEEEEEE---TT----------------------SC--CEEEETTCEEE
T ss_pred ceEEEEEEECCCCcCCCEeC-CCcEEEEEEeCEEEEEE---CC----------------------EE--EEEeCCCCEEE
Confidence 56788899999999999999 57899999999999986 22 11 3 689999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEec
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
||+|.+|.+.|.++.++.++++...
T Consensus 78 ip~~~~H~~~~~~~~~~~~l~i~~~ 102 (117)
T 2b8m_A 78 VPFNVKMLIQNINSDILEFFVVKAP 102 (117)
T ss_dssp ECTTCEEEEECCSSSEEEEEEEECS
T ss_pred ECCCCcEEeEcCCCCCEEEEEEECC
Confidence 9999999999988888888877444
No 110
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=98.65 E-value=2e-07 Score=81.70 Aligned_cols=75 Identities=8% Similarity=0.148 Sum_probs=64.3
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
..+.+..+.+.||+...|||| +..+|.||++|++.+.+ ++ +. ..|++||+++
T Consensus 32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~----------------------~~--~~l~~Gd~~~ 83 (128)
T 4i4a_A 32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---ND----------------------ED--FPVTKGDLII 83 (128)
T ss_dssp CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TT----------------------EE--EEEETTCEEE
T ss_pred CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CC----------------------EE--EEECCCcEEE
Confidence 368899999999999999999 68999999999999986 22 22 3799999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEE
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
||+|.+|.+.|.+++++.++++.
T Consensus 84 i~~~~~H~~~~~~~~~~~~~~i~ 106 (128)
T 4i4a_A 84 IPLDSEHHVINNNQEDFHFYTIW 106 (128)
T ss_dssp ECTTCCEEEEECSSSCEEEEEEE
T ss_pred ECCCCcEEeEeCCCCCEEEEEEE
Confidence 99999999999878888876653
No 111
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=98.64 E-value=2e-07 Score=81.53 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=61.8
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+.++.+.||+...+|||+. .+++||++|++.+.+ ++ +. ..|++||+++|
T Consensus 40 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i 91 (126)
T 4e2g_A 40 NLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GE----------------------ET--RVLRPGMAYTI 91 (126)
T ss_dssp SCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TT----------------------EE--EEECTTEEEEE
T ss_pred CeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CC----------------------EE--EEeCCCCEEEE
Confidence 6889999999999999999985 899999999999976 22 22 47999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~ 474 (540)
|+|.+|.+.|.++ +..++.+.
T Consensus 92 p~~~~H~~~~~~~-~~~~l~v~ 112 (126)
T 4e2g_A 92 PGGVRHRARTFED-GCLVLDIF 112 (126)
T ss_dssp CTTCCEEEECCTT-CEEEEEEE
T ss_pred CCCCcEEeEECCC-CEEEEEEE
Confidence 9999999999866 66666543
No 112
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=98.64 E-value=3.4e-07 Score=81.68 Aligned_cols=74 Identities=11% Similarity=0.179 Sum_probs=63.7
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+.+..+.+.||+...||||+...+++||++|++.+.+- + +. ..|++||+++|
T Consensus 56 ~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~---~----------------------~~--~~l~~Gd~i~i 108 (133)
T 1o4t_A 56 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN---G----------------------KD--VPIKAGDVCFT 108 (133)
T ss_dssp EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET---T----------------------EE--EEEETTEEEEE
T ss_pred eEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEEC---C----------------------EE--EEeCCCcEEEE
Confidence 467889999999999999997789999999999998752 2 22 37999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|+|.+|.+.|.+++++.++++
T Consensus 109 ~~~~~H~~~n~~~~~~~~l~v 129 (133)
T 1o4t_A 109 DSGESHSIENTGNTDLEFLAV 129 (133)
T ss_dssp CTTCEEEEECCSSSCEEEEEE
T ss_pred CCCCcEEeEECCCCCEEEEEE
Confidence 999999999988888887765
No 113
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=98.62 E-value=1.6e-07 Score=87.15 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=76.4
Q ss_pred CcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcc-cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCC
Q 040805 349 PSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMA-APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGS 427 (540)
Q Consensus 349 P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~-~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~ 427 (540)
|......|..+..-. +.+...++.+..++|.||+.. .+|||+...+++||++|++.+.+- +
T Consensus 21 p~~~~~~G~~~~~l~---~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~---~------------ 82 (163)
T 3i7d_A 21 RLNAAMDGRSSLRLG---DAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD---Q------------ 82 (163)
T ss_dssp GGGGGGTTEEEEEHH---HHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET---T------------
T ss_pred CccccCCCeEEEEcc---cCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC---C------------
Confidence 444455676554432 222333688999999999965 799998888999999999998752 1
Q ss_pred CccccCCccceEEeeeeCCCcEEEECCC--CeEEEEecCCCCEEEEEEEecC
Q 040805 428 STREEGSATYHKVSSRIRTDSAYIVPAG--HPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~GDV~vVPaG--~~h~~~n~~~e~l~~v~F~~~a 477 (540)
+. ..|++||+++||+| .+|.+.|.+++++.++++.+..
T Consensus 83 ----------~~--~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 83 ----------GE--HPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp ----------EE--EEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred ----------EE--EEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 22 47999999999999 9999999888899988875554
No 114
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=98.61 E-value=1.7e-07 Score=82.14 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=64.0
Q ss_pred cccceEEEEEEcCCCccc-ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805 371 DLDITVSYANISKGAMAA-PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449 (540)
Q Consensus 371 ~l~isv~~~~L~pggm~~-PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV 449 (540)
..++.+..+.+.||+... ||||+....+.||++|++.+.+- + +. ..|++||+
T Consensus 23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~---~----------------------~~--~~l~~Gd~ 75 (125)
T 3cew_A 23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID---G----------------------EK--IELQAGDW 75 (125)
T ss_dssp CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET---T----------------------EE--EEEETTEE
T ss_pred CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC---C----------------------EE--EEeCCCCE
Confidence 446888899999999987 89996554566699999998751 2 23 37999999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805 450 YIVPAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 450 ~vVPaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
++||+|.+|.+.|.+++++.++++....
T Consensus 76 i~i~~~~~H~~~~~~~~~~~~~~i~~~~ 103 (125)
T 3cew_A 76 LRIAPDGKRQISAASDSPIGFLCIQVKA 103 (125)
T ss_dssp EEECTTCCEEEEEBTTBCEEEEEEEEET
T ss_pred EEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 9999999999999877888887764443
No 115
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=98.61 E-value=2.6e-07 Score=85.41 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=66.4
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.++.+..+.|.||+...+|||+ ..+++||++|++.+.+ ++ +. ..|++||+++
T Consensus 42 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~v~v---~g----------------------~~--~~l~~Gd~i~ 93 (156)
T 3kgz_A 42 LACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGHGQCLV---GE----------------------TI--SDVAQGDLVF 93 (156)
T ss_dssp CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEE
T ss_pred CcEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE---CC----------------------EE--EEeCCCCEEE
Confidence 4688999999999999999997 4689999999999985 22 22 3799999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEecC
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
||+|.+|.+.|.+++++.++++....
T Consensus 94 ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 94 IPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 99999999999889999998875443
No 116
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=98.60 E-value=2.2e-07 Score=86.84 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=66.0
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.++.+..++|.||+...+|||+. .+++||++|++.+.+ ++ +. ..|.+||+++
T Consensus 51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v---~g----------------------~~--~~l~~GD~i~ 102 (166)
T 3jzv_A 51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMV---GR----------------------AV--SAVAPYDLVT 102 (166)
T ss_dssp CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEE---TT----------------------EE--EEECTTCEEE
T ss_pred CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CC----------------------EE--EEeCCCCEEE
Confidence 46889999999999999999975 699999999999875 22 22 4799999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEec
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
||+|.+|.+.|.+++++.++++...
T Consensus 103 ip~g~~H~~~n~~~~~~~~l~i~~~ 127 (166)
T 3jzv_A 103 IPGWSWHQFRAPADEALGFLCMVNA 127 (166)
T ss_dssp ECTTCCEEEECCTTSCEEEEEEEES
T ss_pred ECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 9999999999988999999887544
No 117
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=98.59 E-value=2.7e-07 Score=82.35 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=64.9
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+.+.||+...+|||+ ..+++||++|++.+.+...+ +. ..|++||+++|
T Consensus 38 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~~~-----------------------~~--~~l~~Gd~~~i 91 (145)
T 3ht1_A 38 RFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQG-----------------------RT--EEVGPGEAIFI 91 (145)
T ss_dssp SEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGGGT-----------------------EE--EEECTTCEEEE
T ss_pred cEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeECC-----------------------EE--EEECCCCEEEE
Confidence 688999999999999999997 55778999999998742221 22 37999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEecC
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
|+|.+|.+.|.+++++.++++...+
T Consensus 92 p~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 92 PRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp CTTCCBEEECCTTCCEEEEEEEESC
T ss_pred CCCCeEEeEcCCCCCEEEEEEECCC
Confidence 9999999999888888888765443
No 118
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=98.58 E-value=3e-07 Score=90.89 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=66.3
Q ss_pred ccceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
..+-+.+++++||+.... ++|..++.+||++|++.+.+ +...+.|++||+++++++.+|++.|+| ++++++|.+
T Consensus 163 ~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~----~~~~~~l~~GD~~~~~~~~pH~~~n~g-~~~~~yl~~ 237 (246)
T 1sfn_A 163 FDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL----EENYYPVTAGDIIWMGAHCPQWYGALG-RNWSKYLLY 237 (246)
T ss_dssp CSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEEEE
T ss_pred CCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE----CCEEEEcCCCCEEEECCCCCEEEEcCC-CCCEEEEEE
Confidence 355677789999998765 45678899999999999888 667899999999999999999999998 568988854
Q ss_pred eecCCC
Q 040805 256 IKSINL 261 (540)
Q Consensus 256 ~~~~~~ 261 (540)
- +.|.
T Consensus 238 k-d~~r 242 (246)
T 1sfn_A 238 K-DMNR 242 (246)
T ss_dssp E-ECSS
T ss_pred E-eccc
Confidence 4 5664
No 119
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=98.57 E-value=5.9e-07 Score=84.66 Aligned_cols=152 Identities=8% Similarity=0.016 Sum_probs=94.0
Q ss_pred ccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCCC-ceeEcCCCCCcccCCCce-E
Q 040805 281 RAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESR-GTFNLFGKRPSHSNNFGE-L 358 (540)
Q Consensus 281 ~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~-~~fnL~~~~P~~~n~~G~-~ 358 (540)
.+++..-||+..|++..++.++-..... .+.+.+..|.....-...|=+..... .. .........|. +
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g~~~-----p~~~~l~~ia~~l~v~~~~l~~~~~~~~~-----~~~~~~~~~g~~~ 92 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERGESS-----PTIATLWKIASGLEASFSAFFANDPQLLS-----SERSFPDDLNMKI 92 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTTCSC-----CCHHHHHHHHHHHTCCSGGGGTTSTHHHH-----HCCBCTTCTTEEE
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCC-----CCHHHHHHHHHHHCcCHHHHcCCCCCCCc-----cceEEeCCCCEEE
Confidence 4788999999999999999999876532 12222222211000000011111111 00 11122234453 2
Q ss_pred EEecCCCCCCCccccceEEEEEEcCCCcccccccC-CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc
Q 040805 359 FEADSNDFRPLEDLDITVSYANISKGAMAAPFYNS-RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY 437 (540)
Q Consensus 359 ~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~-~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~ 437 (540)
..+. |......+.+..+++.||+...++||. ...+++||++|++.+.+ ++
T Consensus 93 ~~l~----~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~---------------------- 143 (192)
T 1y9q_A 93 HTLF----PYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DE---------------------- 143 (192)
T ss_dssp EEEE----EEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TT----------------------
T ss_pred EEec----cCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CC----------------------
Confidence 2332 222334688999999999998744432 45799999999999876 22
Q ss_pred eEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805 438 HKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 438 ~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
+. ..|++||+++||+|.+|.+.|.+++++ ++++.
T Consensus 144 ~~--~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~ 177 (192)
T 1y9q_A 144 QW--HELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIV 177 (192)
T ss_dssp EE--EEECTTCEEEEECSSSEEEEESSSCEE-EEEEE
T ss_pred EE--EEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEE
Confidence 23 379999999999999999999888888 76653
No 120
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=98.57 E-value=2e-07 Score=82.18 Aligned_cols=77 Identities=8% Similarity=0.084 Sum_probs=65.2
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.++.+..+.+.||+...+|||+ ..+++||++|++.+.+ ++ +. ..|++||+++
T Consensus 46 ~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~----------------------~~--~~l~~Gd~i~ 97 (126)
T 1vj2_A 46 PNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQ----------------------GE--ETVEEGFYIF 97 (126)
T ss_dssp SSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SS----------------------CE--EEEETTEEEE
T ss_pred CCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEE---CC----------------------EE--EEECCCCEEE
Confidence 3688999999999999999997 7899999999999874 12 22 3699999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEec
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
||+|.+|.+.|.+++++.++++...
T Consensus 98 ip~g~~H~~~~~~~~~~~~l~v~~~ 122 (126)
T 1vj2_A 98 VEPNEIHGFRNDTDSEVEFLCLIPK 122 (126)
T ss_dssp ECTTCCEEEECCSSSCEEEEEEEEG
T ss_pred ECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 9999999999988888888876544
No 121
>2l37_A Ribosome-inactivating protein luffin P1; hydrolase; NMR {Luffa aegyptiaca}
Probab=98.57 E-value=6.9e-08 Score=69.87 Aligned_cols=42 Identities=21% Similarity=0.612 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHhhhccC
Q 040805 89 GEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGE 131 (540)
Q Consensus 89 ~d~~~~~~~~c~~~c~~~~~~~~q~~~c~~rc~~~~~~~~~~~ 131 (540)
.|| +++|.+|+++|+++..+..++..|+++|+++|+++++++
T Consensus 1 ~dP-~~el~~C~~~C~~q~q~~eq~q~C~qrCee~y~e~~~~~ 42 (43)
T 2l37_A 1 GSP-RTEYEACRVRCQVAEHGVERQRRCQQVCEKRLREREGRR 42 (43)
T ss_dssp CCC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHCSC
T ss_pred CCH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhccC
Confidence 378 999999999999988877899999999999999887543
No 122
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=98.56 E-value=5.2e-07 Score=91.98 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=59.0
Q ss_pred eeeeCCC-ccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805 183 ILIANPQ-TFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI 259 (540)
Q Consensus 183 ~~~l~Pg-gl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~ 259 (540)
++.+.|+ ....+|||. ..+++||++|++++.+ +..++.|++||+++||+|++|++.|.+ + +++++.++.+.
T Consensus 221 ~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i----~~~~~~l~~GD~~~ip~~~~H~~~n~~-~-~~~~l~v~~~~ 293 (337)
T 1y3t_A 221 VSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPANTVHSYRLDS-H-YTKMVGVLVPG 293 (337)
T ss_dssp EEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECS-S-SEEEEEEEESS
T ss_pred EEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCeEEEEECC-C-CeEEEEEEcCc
Confidence 3366674 556778886 7999999999999988 457899999999999999999999987 4 78888887544
No 123
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=98.56 E-value=3e-07 Score=83.71 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=73.1
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.++.+..+.+.||+...+|||+. .+++||++|++.+.+=. +. ...|++||+++
T Consensus 46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~~-------------------------~~-~~~l~~Gd~i~ 98 (147)
T 2f4p_A 46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERG-------------------------KP-ARILKKGDVVE 98 (147)
T ss_dssp SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETT-------------------------SC-CEEEETTCEEE
T ss_pred CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEECC-------------------------EE-EEEECCCCEEE
Confidence 36889999999999999999976 89999999999987521 11 13699999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHH
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKE 501 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla 501 (540)
||+|.+|++.|.+++++.++++....... ...++..+..+...
T Consensus 99 ip~~~~H~~~n~~~~~~~~l~v~~~~~~~-------~~~wl~~v~~e~~~ 141 (147)
T 2f4p_A 99 IPPNVVHWHGAAPDEELVHIGISTQVHLG-------PAEWLGSVTEEEYR 141 (147)
T ss_dssp ECTTCCEEEEEBTTBCEEEEEEECCGGGC-------CCEECCCCCHHHHH
T ss_pred ECCCCcEEeEeCCCCCEEEEEEEccCCCC-------CceecccCCHHHhh
Confidence 99999999999888888888775443111 13455555555443
No 124
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=98.56 E-value=1.9e-07 Score=94.13 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=67.9
Q ss_pred ccceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 177 EKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.++.+.+++++||+.... |+|..++.+||++|++.+.+ +...+.|++||++++++|.+|+++|+| +++|++|.+
T Consensus 189 ~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~----~~~~~~v~~GD~~~~~~~~~h~~~n~g-~~~~~yl~~ 263 (278)
T 1sq4_A 189 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL----NQDWVEVEAGDFMWLRAFCPQACYSGG-PGRFRYLLY 263 (278)
T ss_dssp CSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE----TTEEEEEETTCEEEEEESCCEEEECCS-SSCEEEEEE
T ss_pred CCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEEcCC-CCCEEEEEE
Confidence 467788899999998764 45667899999999998887 567899999999999999999999998 579999977
Q ss_pred eecCCC
Q 040805 256 IKSINL 261 (540)
Q Consensus 256 ~~~~~~ 261 (540)
. +.|.
T Consensus 264 ~-d~nr 268 (278)
T 1sq4_A 264 K-DVNR 268 (278)
T ss_dssp E-ECSS
T ss_pred E-EcCC
Confidence 7 4664
No 125
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=98.55 E-value=2.5e-07 Score=90.30 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=61.1
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe-CCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN-TDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N-~g~~e~l~~v~i~ 256 (540)
.+.+.++.+.||+...+|+|..++++||++|++.+.+ +...+.|++||.++||+|++|++.| .+ ++.++.++
T Consensus 152 ~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~g~~~~l~~Gd~i~ip~~~~H~~~~~~~---~~~~ll~~ 224 (227)
T 3rns_A 152 NLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV----DGKPFIVKKGESAVLPANIPHAVEAETE---NFKMLLIL 224 (227)
T ss_dssp TEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE----TTEEEEEETTEEEEECTTSCEEEECCSS---CEEEEEEE
T ss_pred CeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCCC---CEEEEEEE
Confidence 4567778999999988898988999999999999987 4568999999999999999999999 54 46555443
No 126
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=98.54 E-value=4.1e-07 Score=79.15 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
-++.+.++.+.||+...+|||+. .+++||++|++.+.+ ++ +. ..|++||+++
T Consensus 34 ~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~----------------------~~--~~l~~Gd~i~ 85 (114)
T 3fjs_A 34 HRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGV---DG----------------------AQ--RRLHQGDLLY 85 (114)
T ss_dssp TTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEE---TT----------------------EE--EEECTTEEEE
T ss_pred CCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEE---CC----------------------EE--EEECCCCEEE
Confidence 36889999999999999999975 699999999999875 12 22 4799999999
Q ss_pred ECCCCeEEEEecCCCCEEE
Q 040805 452 VPAGHPVVTVASQNNNLEV 470 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~ 470 (540)
||+|.+|.+.|.++..+.+
T Consensus 86 ip~~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 86 LGAGAAHDVNAITNTSLLV 104 (114)
T ss_dssp ECTTCCEEEEESSSEEEEE
T ss_pred ECCCCcEEEEeCCCcEEEE
Confidence 9999999999986544443
No 127
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=98.53 E-value=5.9e-07 Score=77.21 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=60.2
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+.+.||+...+|||+ ..+++||++|++.+.+ ++ +. ..|.+||+++|
T Consensus 33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i 84 (116)
T 2pfw_A 33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DG----------------------VI--KVLTAGDSFFV 84 (116)
T ss_dssp TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TT----------------------EE--EEECTTCEEEE
T ss_pred ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CC----------------------EE--EEeCCCCEEEE
Confidence 478899999999999999997 7899999999999886 22 22 36999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~ 474 (540)
|+|.+|.+.|.+ +..++.+.
T Consensus 85 p~~~~H~~~~~~--~~~~l~v~ 104 (116)
T 2pfw_A 85 PPHVDHGAVCPT--GGILIDTF 104 (116)
T ss_dssp CTTCCEEEEESS--CEEEEEEE
T ss_pred CcCCceeeEeCC--CcEEEEEE
Confidence 999999998875 55655543
No 128
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=98.50 E-value=3.1e-07 Score=76.81 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=51.1
Q ss_pred eeeeeeeCCCccccccccCC-CeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 180 RLGILIANPQTFVTPTHLDA-DAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
.+.+..+. +...+|+|+. .+++||++|++.+.+ +..++.|++||+++||+|.+|.+.|.+ +..++.
T Consensus 32 ~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~ 98 (102)
T 3d82_A 32 QFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAF----RDQNITLQAGEMYVIPKGVEHKPMAKE---ECKIMI 98 (102)
T ss_dssp EEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTCCBEEEEEE---EEEEEE
T ss_pred EEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEE----CCEEEEEcCCCEEEECCCCeEeeEcCC---CCEEEE
Confidence 34344443 4467888876 999999999998876 346789999999999999999999974 455543
No 129
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=98.50 E-value=1.5e-07 Score=80.29 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=50.9
Q ss_pred eeeCCCccccccccCC-CeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 184 LIANPQTFVTPTHLDA-DAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
+.+.||.. .+|+|.. .+++||++|++.+.+ ++..++.|++||+++||+|++|.+.|.+ ++.++.+
T Consensus 33 ~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~---~~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~i 98 (107)
T 2i45_A 33 LVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDF---ADGGSMTIREGEMAVVPKSVSHRPRSEN---GCSLVLI 98 (107)
T ss_dssp EEEEEEEC-CCBCC--CCEEEEESSSCEEEEE---TTSCEEEECTTEEEEECTTCCEEEEEEE---EEEEEEE
T ss_pred EEECCCCC-cceeCCCCCEEEEEEeCEEEEEE---CCCcEEEECCCCEEEECCCCcEeeEeCC---CeEEEEE
Confidence 46678874 5788876 999999999998887 2226899999999999999999999953 4666543
No 130
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=98.50 E-value=5.5e-07 Score=85.99 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=59.8
Q ss_pred eeeeeeeCCCc----------cccccccCCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCCCc
Q 040805 180 RLGILIANPQT----------FVTPTHLDADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDDDE 248 (540)
Q Consensus 180 rl~~~~l~Pgg----------l~~Ph~~~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e 248 (540)
...++.+.|+. ++.+|+|+.+||+||++|+|.+.+-..+ ......|++||+|+||+|+.||+.+.. +.
T Consensus 75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~-~~ 153 (191)
T 1vr3_A 75 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDE-KN 153 (191)
T ss_dssp EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECT-TC
T ss_pred ceeEEEECCCcCcchhhhhccCCcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCC-CC
Confidence 34556667764 3466778889999999999999985542 233579999999999999999999865 45
Q ss_pred cEEEEEEee
Q 040805 249 KLYIVKFIK 257 (540)
Q Consensus 249 ~l~~v~i~~ 257 (540)
.+..+.+|.
T Consensus 154 ~~~airlF~ 162 (191)
T 1vr3_A 154 YVKAMRLFV 162 (191)
T ss_dssp CEEEEEEES
T ss_pred CEEEEEEEC
Confidence 788888884
No 131
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=98.50 E-value=1.8e-07 Score=79.86 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=62.5
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
-.+.+.+++|.||+-...|.|+....|+|+++|++.+. ..++. .....|++||+++
T Consensus 15 ~~v~v~~~~l~PG~~~~~H~H~~~~~iv~v~~G~~~~~--~~dG~----------------------~~~~~l~aGd~~~ 70 (98)
T 2ozi_A 15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIV--APDGT----------------------RSLAQLKTGRSYA 70 (98)
T ss_dssp SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEE--CTTSC----------------------EECCCBCTTCCEE
T ss_pred CcEEEEEEEECCCCccCcEeCCCCEEEEEEeeEEEEEE--eCCCc----------------------EEEEEECCCCEEE
Confidence 36889999999999999898887666666667766654 44441 1124699999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEE
Q 040805 452 VPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
+|+|.+|++.|.++.+++|+++.
T Consensus 71 ~p~G~~H~~~N~g~~~l~fi~vE 93 (98)
T 2ozi_A 71 RKAGVQHDVRNESTAEIVFLEIE 93 (98)
T ss_dssp ECTTCEEEEEECSSSCEEEEEEE
T ss_pred ECCCCceeCEECCCCCEEEEEEE
Confidence 99999999999999999999874
No 132
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=98.49 E-value=6.4e-07 Score=79.02 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=57.5
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
..+++.++++.||+-. +||....|+.||++|++.+.+ ++ +. ..|++||+++
T Consensus 38 ~~~~~~~~~~~pG~~~--~~H~~~~E~~~Vl~G~~~~~~---~g----------------------~~--~~l~~GD~v~ 88 (119)
T 3lwc_A 38 GPITIGYGRYAPGQSL--TETMAVDDVMIVLEGRLSVST---DG----------------------ET--VTAGPGEIVY 88 (119)
T ss_dssp CCCEEEEEEECTTCEE--EEECSSEEEEEEEEEEEEEEE---TT----------------------EE--EEECTTCEEE
T ss_pred CCEEEEEEEECCCCCc--CccCCCCEEEEEEeCEEEEEE---CC----------------------EE--EEECCCCEEE
Confidence 3688999999999854 677789999999999999987 23 23 3699999999
Q ss_pred ECCCCeEEEEecCCCCEEEEE
Q 040805 452 VPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~ 472 (540)
||+|.+|++.|.+ +...++.
T Consensus 89 ip~g~~H~~~~~~-~~~~~l~ 108 (119)
T 3lwc_A 89 MPKGETVTIRSHE-EGALTAY 108 (119)
T ss_dssp ECTTCEEEEEEEE-EEEEEEE
T ss_pred ECCCCEEEEEcCC-CCeEEEE
Confidence 9999999988764 4555544
No 133
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=98.49 E-value=4.2e-07 Score=88.05 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=74.8
Q ss_pred eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
-|...+|...++ ..+.+.- -..++++++.+.||+..+.|.|.++|++||++|.+.+.+ ++...+.+++||++
T Consensus 110 ~f~~~~a~~elv---GP~g~~~--s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v---~~g~~~~l~pGd~v 181 (217)
T 4b29_A 110 DFLNRFGWFELA---GPSGHFL--TQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHL---RNAPDLMLEPGQTR 181 (217)
T ss_dssp HHHHHEEEEEEE---ETTSSEE--CSSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEE---TTSCCEEECTTCEE
T ss_pred hHHhCceEEEEE---CCCCCCC--CCeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEE---CCCCEEecCCCCEE
Confidence 456677888887 3332222 356788899999999977777889999999999998887 44678899999999
Q ss_pred EECCCCeEEEEeCCCCccEEEEEEe
Q 040805 232 RVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 232 ~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
++|+|++|++.+ + +++|.++.+.
T Consensus 182 ~ipsgv~Ha~rt-~-dePllalwvW 204 (217)
T 4b29_A 182 FHPANAPHAMTT-L-TDPILTLVLW 204 (217)
T ss_dssp EECTTCCEEEEC-C-SSCEEEEEEE
T ss_pred EcCCCCceeEEE-C-CccEEEEEEE
Confidence 999999999985 4 4788665554
No 134
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=98.48 E-value=2.7e-07 Score=79.25 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=51.0
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.++++.+.||.. |.|++..|++||++|++.+.+ ++..++.|++||+++||+|++|.+.|.+
T Consensus 32 ~~~~~~~~pg~~--~~hH~~~E~~~Vl~G~~~~~i---~~g~~~~l~~GD~i~ip~g~~H~~~n~~ 92 (101)
T 1o5u_A 32 KWPIWEKEVSEF--DWYYDTNETCYILEGKVEVTT---EDGKKYVIEKGDLVTFPKGLRCRWKVLE 92 (101)
T ss_dssp GSCEEEECSEEE--EEECSSCEEEEEEEEEEEEEE---TTCCEEEEETTCEEEECTTCEEEEEEEE
T ss_pred EEEEEEeCCCcc--cccCCceEEEEEEeCEEEEEE---CCCCEEEECCCCEEEECCCCcEEEEeCC
Confidence 355678899875 334678999999999999887 2256899999999999999999999976
No 135
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=98.48 E-value=7.6e-07 Score=76.41 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=60.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+.+.||+-..+|||+ ..+++||++|++.+.+ ++ +. ..|.+||+++|
T Consensus 39 ~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i 90 (115)
T 1yhf_A 39 DLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQ----------------------ET--YRVAEGQTIVM 90 (115)
T ss_dssp TEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TT----------------------EE--EEEETTCEEEE
T ss_pred ceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CC----------------------EE--EEECCCCEEEE
Confidence 578889999999999999997 6899999999999875 22 22 37999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
|+|.+|.+.|.+ ++.++++.+.
T Consensus 91 p~~~~H~~~~~~--~~~~~~v~~~ 112 (115)
T 1yhf_A 91 PAGIPHALYAVE--AFQMLLVVVK 112 (115)
T ss_dssp CTTSCEEEEESS--CEEEEEEEEC
T ss_pred CCCCCEEEEECC--CceEEEEEEc
Confidence 999999998875 4666554333
No 136
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=98.48 E-value=1.4e-06 Score=73.72 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=58.3
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEE-EEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKV-AVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY 450 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei-~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~ 450 (540)
-++.+..+.+.||+...+|||+...++ +||++|++.+.+-. + +. ..|.+||++
T Consensus 31 ~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~--~----------------------~~--~~l~~Gd~~ 84 (110)
T 2q30_A 31 ENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG--D----------------------AV--IPAPRGAVL 84 (110)
T ss_dssp SSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG--G----------------------CE--EEECTTEEE
T ss_pred CCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC--C----------------------EE--EEECCCCEE
Confidence 367888999999999999999866787 89999999987411 1 12 369999999
Q ss_pred EECCCCeEEEEecCCCCEEEEE
Q 040805 451 IVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 451 vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
+||+|.+|.+.|.++ ..++.
T Consensus 85 ~ip~~~~H~~~~~~~--~~~l~ 104 (110)
T 2q30_A 85 VAPISTPHGVRAVTD--MKVLV 104 (110)
T ss_dssp EEETTSCEEEEESSS--EEEEE
T ss_pred EeCCCCcEEEEEcCC--cEEEE
Confidence 999999999988754 44443
No 137
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=98.45 E-value=6.3e-07 Score=79.35 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
.+..+.+.||+...+|||+...+++||++|++.+.+-. + +. ..|++||+++||+
T Consensus 44 ~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~--~----------------------~~--~~l~~Gd~~~ip~ 97 (134)
T 2o8q_A 44 HVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYED--I----------------------GA--VMLEAGGSAFQPP 97 (134)
T ss_dssp EEEEECC-----CCCEEECCSCEEEEEEESEEEEEETT--T----------------------EE--EEEETTCEEECCT
T ss_pred EEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECC--c----------------------EE--EEecCCCEEEECC
Confidence 34455555899999999988899999999999987632 1 12 3699999999999
Q ss_pred CCeEEEEecCCCCEEEEEE
Q 040805 455 GHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 455 G~~h~~~n~~~e~l~~v~F 473 (540)
|.+|.+.|.++ ++.++++
T Consensus 98 g~~H~~~~~~~-~~~~l~~ 115 (134)
T 2o8q_A 98 GVRHRELRHSD-DLEVLEI 115 (134)
T ss_dssp TCCEEEEEECT-TCEEEEE
T ss_pred CCcEEeEeCCC-CeEEEEE
Confidence 99999998655 4576654
No 138
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=98.38 E-value=1.9e-07 Score=88.44 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=52.1
Q ss_pred ccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 192 VTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
+.+|+|+.+|++||++|+|.+.+...+......+++||+|+||+|+.||+.+.. +..+..+.+|.
T Consensus 93 ~~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~-~~~~~~ir~F~ 157 (179)
T 1zrr_A 93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGS-EPNFTAIRIFD 157 (179)
T ss_dssp HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSS-CSSCEEEEEEC
T ss_pred ccceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCC-CceEEEEEecc
Confidence 567888889999999999998876223334567999999999999999998865 34677777774
No 139
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=98.33 E-value=4.4e-06 Score=79.73 Aligned_cols=80 Identities=11% Similarity=0.196 Sum_probs=62.3
Q ss_pred eEEEEEEcCCC----------cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805 375 TVSYANISKGA----------MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI 444 (540)
Q Consensus 375 sv~~~~L~pgg----------m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 444 (540)
+...+.+.|+. .+.+|+|+. .+|.||++|+|.+.|-..++ +.+...|
T Consensus 75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d----------------------~~~~i~v 131 (191)
T 1vr3_A 75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKED----------------------KWIRISM 131 (191)
T ss_dssp EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTS----------------------CEEEEEE
T ss_pred ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCC----------------------eEEEEEE
Confidence 55667777775 347899986 79999999999999887533 2344579
Q ss_pred CCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805 445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
++||+++||+|.+|+..++.+..+..+.|+++.
T Consensus 132 ~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 132 EKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp ETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred CCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 999999999999999988766667777665554
No 140
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=98.31 E-value=2.2e-05 Score=78.50 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=46.9
Q ss_pred ccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 192 VTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
+-=||.+.+|++|+++|..++-+++.+......|++||+|++|+|++|.=.-..
T Consensus 44 ~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~ 97 (286)
T 2qnk_A 44 KDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA 97 (286)
T ss_dssp CCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred ccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccC
Confidence 444555789999999999999999876667889999999999999999998854
No 141
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=98.31 E-value=5.6e-06 Score=76.60 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=71.6
Q ss_pred ceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEe--ceEEEEEEcCCCCC
Q 040805 340 GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVA--GDGYIEIACPHVSR 417 (540)
Q Consensus 340 ~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~--G~g~v~vv~p~~~~ 417 (540)
...+|.+-+| .....|..+.+-..+- ...+++..+.+ ++-..+|||+...|+.||++ |++.+.+ ++
T Consensus 18 ~iv~~~ei~~-~~~~~G~srR~l~~~~----~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dg-- 85 (157)
T 4h7l_A 18 QMISLSEIEA-VACPCGWAQRAFGHDA----GTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL---NG-- 85 (157)
T ss_dssp EEEETTTSCC-EEETTEEEEEESCGGG----CCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE---TT--
T ss_pred eEEEhhhCCC-ccCCCCeeeEEeEcCC----CCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE---CC--
Confidence 3566766665 5677886655443211 12244555554 55568999999999999999 9999986 22
Q ss_pred CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805 418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
+. ..|++||+++||+|..|.+.+ ++.++++.+.+
T Consensus 86 --------------------e~--~~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~Pp 119 (157)
T 4h7l_A 86 --------------------QS--YPLTKLLAISIPPLVRHRIVG----EATIINIVSPP 119 (157)
T ss_dssp --------------------EE--EECCTTEEEEECTTCCEEEES----CEEEEEEEESS
T ss_pred --------------------EE--EEeCCCCEEEECCCCeEeeEC----CEEEEEEECCC
Confidence 23 379999999999999999872 68888876554
No 142
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=98.29 E-value=6.6e-07 Score=79.55 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=52.6
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.+.++++.+.||.... |++..+|++||++|++.+.+ .+...+.|++||+++||+|++|.+.|.+
T Consensus 48 ~~~~g~w~~~pG~~~~-~~~~~~E~~~Vl~G~~~l~~---~~g~~~~l~~GD~~~ip~g~~h~~~~~~ 111 (123)
T 3bcw_A 48 KVESGVWESTSGSFQS-NTTGYIEYCHIIEGEARLVD---PDGTVHAVKAGDAFIMPEGYTGRWEVDR 111 (123)
T ss_dssp TEEEEEEEEEEEEEEC-CCTTEEEEEEEEEEEEEEEC---TTCCEEEEETTCEEEECTTCCCEEEEEE
T ss_pred CEEEEEEEECCCceee-EcCCCcEEEEEEEEEEEEEE---CCCeEEEECCCCEEEECCCCeEEEEECC
Confidence 4678888999998754 33333899999999998775 3456789999999999999999999986
No 143
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.3e-06 Score=78.94 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=62.9
Q ss_pred cceEEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 373 DITVSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 373 ~isv~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
-+.+..++|.| |+...|+.+..+.+++||++|+..++|- + +. ..|.+||.++
T Consensus 87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~---g----------------------~~--~~L~~Gds~~ 139 (166)
T 2vpv_A 87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC---K----------------------NK--FLSVKGSTFQ 139 (166)
T ss_dssp SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEET---T----------------------EE--EEEETTCEEE
T ss_pred cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEEC---C----------------------EE--EEEcCCCEEE
Confidence 36677899999 8888999888999999999999999872 2 23 3799999999
Q ss_pred ECCCCeEEEEecCCCCEEEEEE
Q 040805 452 VPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 452 VPaG~~h~~~n~~~e~l~~v~F 473 (540)
||+|.+|.+.|.++.++.++..
T Consensus 140 iP~g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 140 IPAFNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp ECTTCEEEEEECSSSCEEEEEE
T ss_pred ECCCCCEEEEECCCCCEEEEEE
Confidence 9999999999998888776653
No 144
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=98.27 E-value=4.2e-05 Score=74.70 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=105.7
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI 259 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~ 259 (540)
.+.++.+.||+.+++|.|...+.+||++|... +. ...+.+||.+++|+|+.|.... . +.+.++..+ .
T Consensus 44 ~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~----d~----~~~~~~Gd~~~~P~g~~H~p~a-~--~gc~~~vk~--~ 110 (223)
T 3o14_A 44 ATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ----DE----HGDYPAGTYVRNPPTTSHVPGS-A--EGCTIFVKL--W 110 (223)
T ss_dssp EEEEEEECTTEECCCEECTTCEEEEEEEEEEE----ET----TEEEETTEEEEECTTCEECCEE-S--SCEEEEEEE--S
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEE----EC----CeEECCCeEEEeCCCCccccEe-C--CCCEEEEEe--c
Confidence 46677999999999998999999999999853 22 3579999999999999998876 3 235444322 1
Q ss_pred CCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCCC
Q 040805 260 NLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESR 339 (540)
Q Consensus 260 ~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~ 339 (540)
+.+ . .+...+ ..+. ..|...
T Consensus 111 ~~~---------------------------------~---------~d~~~v-~~~~-------------~~W~~~---- 130 (223)
T 3o14_A 111 QFD---------------------------------P---------ADRTQF-SKNM-------------EAELGA---- 130 (223)
T ss_dssp CSC---------------------------------T---------TCCBCE-EEET-------------TTTCCC----
T ss_pred CCC---------------------------------C---------Cccccc-ccch-------------hccccc----
Confidence 111 0 000011 1100 002110
Q ss_pred ceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805 340 GTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS 418 (540)
Q Consensus 340 ~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~ 418 (540)
...| .+..+.... +-.+.++.+.||+.+.+|.| ...|| +|++|+... .+
T Consensus 131 -------------~~~Gv~~~~L~~~~-------~E~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~d----~~---- 180 (223)
T 3o14_A 131 -------------PVEGISTSLLHEDE-------RETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVTV----ND---- 180 (223)
T ss_dssp -------------CBTTEEEEEEEECS-------SCEEEEEEECTTCEEEECCS-SCEEE-EEEEEEEEE----TT----
T ss_pred -------------CCCCeEEEEEecCC-------CcEEEEEEECCCCccCCCCC-CcEEE-EEEEeEEEE----CC----
Confidence 0123 333333221 34577899999999999998 88887 999999542 21
Q ss_pred cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
..+.+||-+..|.|..|...++
T Consensus 181 -----------------------~~~~~GsWlR~P~gs~h~~~ag 202 (223)
T 3o14_A 181 -----------------------EVLGRNAWLRLPEGEALSATAG 202 (223)
T ss_dssp -----------------------EEECTTEEEEECTTCCEEEEEE
T ss_pred -----------------------ceECCCeEEEeCCCCccCcEEC
Confidence 2588999999999999998884
No 145
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=98.25 E-value=4.4e-06 Score=71.79 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=57.0
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+.+.||.-..+|||+ ..+++||++|++.+.+ ++ +. ..|++||+++|
T Consensus 37 ~~~~~~~~~~~g~~~~~H~h~-~~e~~~vl~G~~~~~i---~~----------------------~~--~~l~~Gd~i~i 88 (114)
T 2ozj_A 37 RVQISLFSFADGESVSEEEYF-GDTLYLILQGEAVITF---DD----------------------QK--IDLVPEDVLMV 88 (114)
T ss_dssp SEEEEEEEEETTSSCCCBCCS-SCEEEEEEEEEEEEEE---TT----------------------EE--EEECTTCEEEE
T ss_pred CceEEEEEECCCCccccEECC-CCeEEEEEeCEEEEEE---CC----------------------EE--EEecCCCEEEE
Confidence 466777888999999999985 6899999999999875 22 22 37999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|+|.+|.+.|. +++.++++
T Consensus 89 ~~~~~H~~~~~--~~~~~~~i 107 (114)
T 2ozj_A 89 PAHKIHAIAGK--GRFKMLQI 107 (114)
T ss_dssp CTTCCBEEEEE--EEEEEEEE
T ss_pred CCCCcEEEEeC--CCcEEEEE
Confidence 99999998886 35555543
No 146
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=98.24 E-value=2.3e-06 Score=72.78 Aligned_cols=70 Identities=21% Similarity=0.121 Sum_probs=52.7
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG 455 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG 455 (540)
...+.+.||.. .+|||+...++.||++|++.+.+-. + +. ..|++||+++||+|
T Consensus 30 ~~~~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~~~--~----------------------~~--~~l~~Gd~~~ip~~ 82 (107)
T 2i45_A 30 QFHLVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDFAD--G----------------------GS--MTIREGEMAVVPKS 82 (107)
T ss_dssp EEEEEEEEEEC-CCBCC--CCEEEEESSSCEEEEETT--S----------------------CE--EEECTTEEEEECTT
T ss_pred EEEEEECCCCC-cceeCCCCCEEEEEEeCEEEEEECC--C----------------------cE--EEECCCCEEEECCC
Confidence 44566778874 5999988799999999999987532 1 12 36999999999999
Q ss_pred CeEEEEecCCCCEEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F~ 474 (540)
.+|.+.|. +++.++.|.
T Consensus 83 ~~H~~~~~--~~~~~l~i~ 99 (107)
T 2i45_A 83 VSHRPRSE--NGCSLVLIE 99 (107)
T ss_dssp CCEEEEEE--EEEEEEEEE
T ss_pred CcEeeEeC--CCeEEEEEE
Confidence 99998885 356666664
No 147
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=98.21 E-value=4.9e-06 Score=69.33 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
.+....+. +...+|||+.+.+++||++|++.+.+- + +. ..|.+||+++||+
T Consensus 32 ~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~~---~----------------------~~--~~l~~Gd~~~ip~ 82 (102)
T 3d82_A 32 QFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAFR---D----------------------QN--ITLQAGEMYVIPK 82 (102)
T ss_dssp EEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEECS---S----------------------CE--EEEETTEEEEECT
T ss_pred EEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEEC---C----------------------EE--EEEcCCCEEEECC
Confidence 33344443 458899998889999999999988742 1 12 3689999999999
Q ss_pred CCeEEEEecCCCCEEEEEE
Q 040805 455 GHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 455 G~~h~~~n~~~e~l~~v~F 473 (540)
|.+|.+.|.+ +..++.+
T Consensus 83 ~~~H~~~~~~--~~~~l~i 99 (102)
T 3d82_A 83 GVEHKPMAKE--ECKIMII 99 (102)
T ss_dssp TCCBEEEEEE--EEEEEEE
T ss_pred CCeEeeEcCC--CCEEEEE
Confidence 9999988863 4556555
No 148
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=98.19 E-value=2.4e-05 Score=67.79 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=65.8
Q ss_pred eeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccc--ccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805 341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPF--YNSRSTKVAVVVAGDGYIEIACPHVSRS 418 (540)
Q Consensus 341 ~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH--~h~~A~ei~yV~~G~g~v~vv~p~~~~~ 418 (540)
+.||++.-|. +........+ +++-++.+.++. .+|....|+ +|....+++||++|++.+.+=..
T Consensus 6 ~~nl~~~~~~-~~~~~~~~~l-------~~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~----- 71 (112)
T 2opk_A 6 HGNLFADVPV-GAPDEIFQPL-------LERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGD----- 71 (112)
T ss_dssp EEETTSSCCT-TCSSCEEEEE-------EEETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTC-----
T ss_pred ccchhhcCCC-CCCCceEEEe-------ecCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEECCE-----
Confidence 4688876553 2222333222 233356676664 445555553 66788899999999999975221
Q ss_pred cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC-CEEEEEEE
Q 040805 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN-NLEVVCFE 474 (540)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e-~l~~v~F~ 474 (540)
.....|++||.++||+|.+|.+.|.+++ ...|+++.
T Consensus 72 --------------------~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~ 108 (112)
T 2opk_A 72 --------------------TAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVH 108 (112)
T ss_dssp --------------------SSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred --------------------EEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEE
Confidence 1002699999999999999999987664 56677653
No 149
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=98.17 E-value=5.8e-06 Score=74.32 Aligned_cols=69 Identities=6% Similarity=0.168 Sum_probs=56.3
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.|.+..+.+.|| ..|||....|++||++|++.+++= + +.+ .|++||+++|
T Consensus 56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~~---g----------------------~~~--~l~~GD~i~~ 105 (133)
T 2pyt_A 56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRHE---G----------------------ETM--IAKAGDVMFI 105 (133)
T ss_dssp SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEET---T----------------------EEE--EEETTCEEEE
T ss_pred cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEEC---C----------------------EEE--EECCCcEEEE
Confidence 588999999999 467888899999999999999862 2 233 7999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|+|.+|.+.+. +++.+++.
T Consensus 106 p~g~~h~~~~~--~~~~~l~v 124 (133)
T 2pyt_A 106 PKGSSIEFGTP--TSVRFLYV 124 (133)
T ss_dssp CTTCEEEEEEE--EEEEEEEE
T ss_pred CCCCEEEEEeC--CCEEEEEE
Confidence 99999988764 45666654
No 150
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=98.17 E-value=6.9e-06 Score=85.85 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=62.2
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+.+.+..|.||....||-|.+++|+||++|+|.+.| +..++.+++||+|+||+++.|.+.|++ ++.++++-
T Consensus 278 ti~~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I----~~~~~~w~~gD~fvvP~w~~h~~~n~~---~a~Lf~~~ 349 (368)
T 3nw4_A 278 TLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM----NGETTKLEKGDMFVVPSWVPWSLQAET---QFDLFRFS 349 (368)
T ss_dssp SCEEEEEEECTTCBCCCEEESSCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEESS---SEEEEEEE
T ss_pred hHHhheEEECCCCccCCeeccccEEEEEEeCcEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC---CEEEEEEe
Confidence 4556666889999999999988899999999999988 567899999999999999999999963 57766554
No 151
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=98.17 E-value=7.4e-06 Score=85.06 Aligned_cols=80 Identities=9% Similarity=0.021 Sum_probs=61.1
Q ss_pred cceEEEEEEcCCCccc---ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805 373 DITVSYANISKGAMAA---PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449 (540)
Q Consensus 373 ~isv~~~~L~pggm~~---PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV 449 (540)
.+.+. ..+.|++... ||||++..|++||++|++.+.+-..++.. +. ..|++||+
T Consensus 47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~--------------------~~--~~L~~GD~ 103 (350)
T 1juh_A 47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQ--------------------QT--RVLSSGDY 103 (350)
T ss_dssp SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCC--------------------EE--EEEETTCE
T ss_pred cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCce--------------------EE--EEECCCCE
Confidence 45566 5667776655 89999999999999999999887643310 22 47999999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEEec
Q 040805 450 YIVPAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 450 ~vVPaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
++||+|.+|.+.|.+++. .++++.+.
T Consensus 104 v~ip~g~~H~~~n~~~~~-~~l~v~~p 129 (350)
T 1juh_A 104 GSVPRNVTHTFQIQDPDT-EMTGVIVP 129 (350)
T ss_dssp EEECTTEEEEEEECSTTE-EEEEEEES
T ss_pred EEECCCCcEEEEeCCCCC-EEEEEEcC
Confidence 999999999999976665 66655334
No 152
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=98.14 E-value=6.6e-06 Score=77.34 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=64.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
|+.+.+++|.||+-..+|.|. ..+++||++|++.+.+-. + +. ..|++||++ |
T Consensus 78 G~~~~~v~l~PG~~~~~H~H~-~eE~~~VLeGel~l~ld~--g----------------------e~--~~L~~GDsi-~ 129 (172)
T 3es1_A 78 GSVIRVVDMLPGKESPMHRTN-SIDYGIVLEGEIELELDD--G----------------------AK--RTVRQGGII-V 129 (172)
T ss_dssp SEEEEEEEECTTCBCCCBCCS-EEEEEEEEESCEEEECGG--G----------------------CE--EEECTTCEE-E
T ss_pred CeEEEEEEECCCCCCCCeecC-ceEEEEEEeCEEEEEECC--C----------------------eE--EEECCCCEE-E
Confidence 788999999999999999974 667899999999987531 1 12 369999999 9
Q ss_pred CCCCeEEEEecCCCCEEEEEEEecC
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
|+|.+|.+.|.+++++.++++.+.+
T Consensus 130 ~~g~~H~~~N~g~~~ar~l~V~~P~ 154 (172)
T 3es1_A 130 QRGTNHLWRNTTDKPCRIAFILIEA 154 (172)
T ss_dssp ECSCCBEEECCSSSCEEEEEEEEEC
T ss_pred eCCCcEEEEeCCCCCEEEEEEEcCC
Confidence 9999999999988999988775554
No 153
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=98.09 E-value=1.2e-05 Score=82.61 Aligned_cols=88 Identities=19% Similarity=0.379 Sum_probs=70.9
Q ss_pred eeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCC-C---cEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 181 LGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKR-G---DIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~-G---Dv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
..+.+++||...-.||| +..++++|++|++.+.+-++...+.+.+.. | |+++||+|..|.+.|.+ +++++++.+
T Consensus 274 ~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~-~~~~~~~~~ 352 (369)
T 3st7_A 274 VSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLG-DTDMVTIMW 352 (369)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECS-SSCEEEEEE
T ss_pred EEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcC-CCcEEEEEe
Confidence 44558899999988887 577999999999999887776666777776 7 99999999999999998 458998888
Q ss_pred eecCCCCCcccccc
Q 040805 256 IKSINLPGQYEAFY 269 (540)
Q Consensus 256 ~~~~~~pg~~~~f~ 269 (540)
.+...+|....+|+
T Consensus 353 ~~~~y~~~~~d~~~ 366 (369)
T 3st7_A 353 VNEMFDPNQPDTYF 366 (369)
T ss_dssp ESSCCCSSSCCCEE
T ss_pred cCcccCCCCCcccc
Confidence 76665565555554
No 154
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=98.05 E-value=1.7e-05 Score=71.50 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=50.3
Q ss_pred cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805 193 TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 193 ~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.||.++.-+++||++|++.+.+ +..++.+++||+++||+|.+|...+.+++++..++.+..
T Consensus 32 ~p~~h~~~~i~~v~~G~~~~~i----~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f 92 (164)
T 2arc_A 32 RPLGMKGYILNLTIRGQGVVKN----QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF 92 (164)
T ss_dssp ETTCCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEE
T ss_pred cccCCCceEEEEEEEeEEEEEE----CCEEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 4888899999999999999988 567899999999999999999998865224555555543
No 155
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=98.05 E-value=3.9e-05 Score=70.57 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=56.3
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+++.++++. ++ ..+||...+|+.||++|++.+++ ++ +. ..|++||+++|
T Consensus 65 ~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g----------------------~~--~~l~~GD~i~i 114 (151)
T 4axo_A 65 RLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DG----------------------RK--VSASSGELIFI 114 (151)
T ss_dssp SCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEEE
T ss_pred cEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CC----------------------EE--EEEcCCCEEEE
Confidence 5788888887 33 35688899999999999999986 33 23 36999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
|+|.+|.+.|. +.+.+++..+.
T Consensus 115 P~G~~h~~~n~--~~a~~l~V~~P 136 (151)
T 4axo_A 115 PKGSKIQFSVP--DYARFIYVTYP 136 (151)
T ss_dssp CTTCEEEEEEE--EEEEEEEEEEC
T ss_pred CCCCEEEEEeC--CCEEEEEEECC
Confidence 99999998886 46666665433
No 156
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=98.04 E-value=1.5e-05 Score=74.46 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=51.7
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.-.||+-+.-|+++.+|++||++|..+|.+.+.+......|++||+|++|+|++|+-...+
T Consensus 41 v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~ 101 (174)
T 1yfu_A 41 VGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPE 101 (174)
T ss_dssp ECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred EcCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccC
Confidence 3456666677777899999999999999998865566899999999999999999987654
No 157
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=98.02 E-value=3.2e-06 Score=79.99 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=53.1
Q ss_pred CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC
Q 040805 385 AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 385 gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~ 464 (540)
+.+.+|+|+. .+|.||++|+|.+.|. .++ +.+...|++||+++||+|.+|+..+..
T Consensus 91 ~~~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d----------------------~~~~~~l~~GDli~IP~g~~H~~~~~~ 146 (179)
T 1zrr_A 91 KFLNEHTHGE-DEVRFFVEGAGLFCLH-IGD----------------------EVFQVLCEKNDLISVPAHTPHWFDMGS 146 (179)
T ss_dssp HHHSCBEESS-CEEEEEEESCCCCCEE-CSS----------------------CEEEEECCCSCEEEECTTCCBCCCCSS
T ss_pred ccccceECCh-heEEEEEcceEEEEEE-eCC----------------------EEEEEEECCCCEEEECCCCeEeeecCC
Confidence 3467899986 8999999999999877 322 344456999999999999999988765
Q ss_pred CCCEEEEEEEecC
Q 040805 465 NNNLEVVCFEINA 477 (540)
Q Consensus 465 ~e~l~~v~F~~~a 477 (540)
+..+..+-|+++.
T Consensus 147 ~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 147 EPNFTAIRIFDNP 159 (179)
T ss_dssp CSSCEEEEEECCG
T ss_pred CceEEEEEeccCC
Confidence 5556666555443
No 158
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=97.93 E-value=1.2e-05 Score=73.22 Aligned_cols=71 Identities=4% Similarity=-0.090 Sum_probs=55.5
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceE--EeeCCCcEEEECCCCeEE-EEeCCCCccEEEEEEe
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRES--YNVKRGDIIRVPSGNTFY-VTNTDDDEKLYIVKFI 256 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~--~~l~~GDv~~iPaG~~h~-~~N~g~~e~l~~v~i~ 256 (540)
.++++.++||+.+.+|.|...+.+||++|+.... .+.+. ..+++||++++|+|..|. ..+.. .+.++.++
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e---~~~~l~~~ 117 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEFPV---ASEFYMSF 117 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEEEE---EEEEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeECCC---CeEEEEEE
Confidence 4667799999999999898888899999998643 34444 789999999999999999 55432 35555555
Q ss_pred e
Q 040805 257 K 257 (540)
Q Consensus 257 ~ 257 (540)
.
T Consensus 118 ~ 118 (145)
T 2o1q_A 118 L 118 (145)
T ss_dssp E
T ss_pred C
Confidence 3
No 159
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=97.87 E-value=5.7e-05 Score=73.16 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=75.1
Q ss_pred CcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805 349 PSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS 428 (540)
Q Consensus 349 P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~ 428 (540)
+.|.+.+|....+.+... ...-+|.+.++.|.||.....|-|+ +.||.||++|.+.+.+-..
T Consensus 109 ~~f~~~~a~~elvGP~g~--~~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~~g--------------- 170 (217)
T 4b29_A 109 RDFLNRFGWFELAGPSGH--FLTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLRNA--------------- 170 (217)
T ss_dssp HHHHHHEEEEEEEETTSS--EECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEETTS---------------
T ss_pred hhHHhCceEEEEECCCCC--CCCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEECCC---------------
Confidence 367788898878876533 2334799999999999999999997 7899999999999986422
Q ss_pred ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805 429 TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
.. ..+.+||++++|+|.+|++.+ +++++..+.
T Consensus 171 ---------~~--~~l~pGd~v~ipsgv~Ha~rt-~dePllalw 202 (217)
T 4b29_A 171 ---------PD--LMLEPGQTRFHPANAPHAMTT-LTDPILTLV 202 (217)
T ss_dssp ---------CC--EEECTTCEEEECTTCCEEEEC-CSSCEEEEE
T ss_pred ---------CE--EecCCCCEEEcCCCCceeEEE-CCccEEEEE
Confidence 11 369999999999999999986 578886443
No 160
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=97.79 E-value=7.6e-05 Score=69.71 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred eCCCccccccccCCCeEEEEEeeEEEEEEEecC----CceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIREN----NRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~----~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
=.||.-+-=||+..+|++||++|..+|.+++.+ ......|++||+|++|+|++|+-.-..
T Consensus 41 gGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~ 104 (176)
T 1zvf_A 41 GGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFA 104 (176)
T ss_dssp CSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred cCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccC
Confidence 345565555667899999999999999999855 245789999999999999999986654
No 161
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=97.79 E-value=3.2e-05 Score=66.14 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=48.7
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG 455 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG 455 (540)
+....+.||... ||....|++||++|++.+.+- ++ +. ..|++||+++||+|
T Consensus 33 ~~~~~~~pg~~~---~hH~~~E~~~Vl~G~~~~~i~--~g----------------------~~--~~l~~GD~i~ip~g 83 (101)
T 1o5u_A 33 WPIWEKEVSEFD---WYYDTNETCYILEGKVEVTTE--DG----------------------KK--YVIEKGDLVTFPKG 83 (101)
T ss_dssp SCEEEECSEEEE---EECSSCEEEEEEEEEEEEEET--TC----------------------CE--EEEETTCEEEECTT
T ss_pred EEEEEeCCCccc---ccCCceEEEEEEeCEEEEEEC--CC----------------------CE--EEECCCCEEEECCC
Confidence 345677787642 445689999999999999862 12 12 36999999999999
Q ss_pred CeEEEEecCCCCEEEE
Q 040805 456 HPVVTVASQNNNLEVV 471 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v 471 (540)
.+|.+.|.++....++
T Consensus 84 ~~H~~~n~~~~~~~yv 99 (101)
T 1o5u_A 84 LRCRWKVLEPVRKHYN 99 (101)
T ss_dssp CEEEEEEEEEEEEEEE
T ss_pred CcEEEEeCCCeeEEEE
Confidence 9999888654333333
No 162
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=97.78 E-value=4.5e-05 Score=72.83 Aligned_cols=70 Identities=11% Similarity=-0.071 Sum_probs=57.3
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
..++.++.+.||+.+++|.|...|++||++|.-. + +...+.+||.+++|+|+.|...+.+ .+.+.++.+.
T Consensus 124 ~~~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----d----e~~~~~~Gd~~~~p~g~~H~p~a~~-~~gc~~l~~~ 193 (195)
T 2q1z_B 124 EAIARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----D----ETDRFGAGDIEIADQELEHTPVAER-GLDCICLAAT 193 (195)
T ss_dssp SSEEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----C----SSSEEETTCEEEECSSCCCCCEECS-SSCEEEEEEE
T ss_pred CcEEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----C----CcEEECCCeEEEeCcCCccCCEeCC-CCCEEEEEEe
Confidence 3567788999999999999999999999999732 2 2357999999999999999999964 3467777665
No 163
>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16
Probab=97.78 E-value=0.00034 Score=65.43 Aligned_cols=129 Identities=15% Similarity=0.161 Sum_probs=83.8
Q ss_pred cCCceEEEeccCccccccccc-cccceeeeeeeCCCccccccccCCCeEEEEEeeEE-EEEEEecCCce-EE----eeCC
Q 040805 155 SQHGRVAFLPKFTQRSKLLRG-LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQG-TITVIRENNRE-SY----NVKR 227 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~G-i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g-~ig~V~~~~~~-~~----~l~~ 227 (540)
.|+|.++..-+.+ +.-.| =...-..++-|.+|.....|-.+++||.|...|.+ .+.++.+++.. +. +|.+
T Consensus 27 PEGG~yret~rs~---~~~~~~R~~~T~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~ 103 (170)
T 1yud_A 27 VEGGFYRSSYRSE---TAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAA 103 (170)
T ss_dssp TTSSEEEEEEECS---SBSSSSSBSCEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTT
T ss_pred CCCceEEEeecCC---CCCCCCCccceEEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCccc
Confidence 4788888763321 10011 12234556678899876666678999999999997 88888887553 32 5789
Q ss_pred CcE--EEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805 228 GDI--IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV 302 (540)
Q Consensus 228 GDv--~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l 302 (540)
|++ ++||+|+-+...+.++ +.+.+-|+..|.- .|..|-|+ +.+-|.+.|---.+.|++|
T Consensus 104 Ge~pQ~vVP~G~wqaa~~~~g-~~~LV~C~VaPGF---~f~dfel~------------~~~~L~~~~P~~~~~I~~l 164 (170)
T 1yud_A 104 GERPQFLVPKGCIFGSAMNQD-GFSLVGCMVSPGF---TFDDFELF------------SQEALLAMYPQHKAVVQKL 164 (170)
T ss_dssp TEESCEEECTTCEEEEEESSS-SEEEEEEEESSCC---CGGGCCBC------------BHHHHHHSCCTTHHHHTTS
T ss_pred CceeEEEECCCCEEEEEECCC-CcEEEEEEECCCc---cCCceEEc------------CHHHHHhHCchhHHHHHHh
Confidence 999 9999999999999843 4566666664433 35566554 3445555554444444443
No 164
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=97.71 E-value=7.1e-05 Score=69.79 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=56.8
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCC-CccEEEEEEe
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDD-DEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~-~e~l~~v~i~ 256 (540)
..+.++.+.||+.+.+|.|...+.+|||+|+.... +. ..+.+++||.+++|+|..|...+..+ +++++++.+.
T Consensus 43 ~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~----~~-~~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~ 116 (165)
T 3cjx_A 43 LMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT----EY-PGQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFML 116 (165)
T ss_dssp EEEEEEEECTTCBCCEEEESSCEEEEEEESEEEET----TC-TTSCEETTEEEEECTTCEECEECCTTCSSCEEEEEEE
T ss_pred cEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC----CC-ceEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEEE
Confidence 34667799999999999898999999999987542 11 14678999999999999999998642 2366555544
No 165
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=97.67 E-value=0.00012 Score=67.89 Aligned_cols=71 Identities=7% Similarity=0.177 Sum_probs=56.9
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC--CCCccEEEEEEe
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT--DDDEKLYIVKFI 256 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~--g~~e~l~~v~i~ 256 (540)
..++++.+.||+.+.+|.|...+.+||++|+... + +. ...+++||.++.|+|..|...+. + ++.++++.+.
T Consensus 42 ~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~---~-e~--~~~~~~Gd~~~~P~g~~H~~~~~~~~-~e~~~~~~~~ 114 (159)
T 3ebr_A 42 ETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY---K-EH--DWVAHAGSVVYETASTRHTPQSAYAE-GPDIITFNIV 114 (159)
T ss_dssp EEEEEEEECSSCBCCCEEESSCEEEEEEESCEEE---T-TS--SCCBCTTCEEEECSSEEECEEESSSS-SSCEEEEEEE
T ss_pred eEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE---e-CC--CeEECCCeEEEECCCCcceeEeCCCC-CCCEEEEEEe
Confidence 5677789999999999989889999999998653 1 11 24799999999999999999997 4 3567666544
No 166
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=97.67 E-value=0.00022 Score=73.12 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=63.1
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCC-C---cE
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT-D---SA 449 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-G---DV 449 (540)
......++.||.+..-|||.+.+++++|++|++.+.+-.+... +.+ .+.. | ++
T Consensus 272 ~q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~ 328 (369)
T 3st7_A 272 GQVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDD---------------------EII--EYYVSGDKLEV 328 (369)
T ss_dssp CEEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCC---------------------CCE--EEEEETTBCCE
T ss_pred ceEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCC---------------------cEE--EEEecCCcceE
Confidence 3356678899999999999999999999999999988755431 233 2333 6 99
Q ss_pred EEECCCCeEEEEecCCCCEEEEEE
Q 040805 450 YIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 450 ~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
++||.|+.|.+.|.++++++++.+
T Consensus 329 ~~ip~g~~h~~~n~~~~~~~~~~~ 352 (369)
T 3st7_A 329 VDIPVGYTHNIENLGDTDMVTIMW 352 (369)
T ss_dssp EEECTTEEEEEEECSSSCEEEEEE
T ss_pred EEeCCCceEEeEEcCCCcEEEEEe
Confidence 999999999999998889988876
No 167
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=97.67 E-value=8.1e-05 Score=65.98 Aligned_cols=65 Identities=11% Similarity=0.202 Sum_probs=50.6
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+.+....+.||.... |+|. ..++.||++|++.+.+ .++ +. ..|++||+++|
T Consensus 48 ~~~~g~w~~~pG~~~~-~~~~-~~E~~~Vl~G~~~l~~--~~g----------------------~~--~~l~~GD~~~i 99 (123)
T 3bcw_A 48 KVESGVWESTSGSFQS-NTTG-YIEYCHIIEGEARLVD--PDG----------------------TV--HAVKAGDAFIM 99 (123)
T ss_dssp TEEEEEEEEEEEEEEC-CCTT-EEEEEEEEEEEEEEEC--TTC----------------------CE--EEEETTCEEEE
T ss_pred CEEEEEEEECCCceee-EcCC-CcEEEEEEEEEEEEEE--CCC----------------------eE--EEECCCCEEEE
Confidence 5788888999998753 5542 2899999999999875 223 22 36999999999
Q ss_pred CCCCeEEEEecCC
Q 040805 453 PAGHPVVTVASQN 465 (540)
Q Consensus 453 PaG~~h~~~n~~~ 465 (540)
|+|.+|.+.|.+.
T Consensus 100 p~g~~h~~~~~~~ 112 (123)
T 3bcw_A 100 PEGYTGRWEVDRH 112 (123)
T ss_dssp CTTCCCEEEEEEE
T ss_pred CCCCeEEEEECCc
Confidence 9999998888643
No 168
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=97.65 E-value=0.00012 Score=66.17 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=56.2
Q ss_pred cceeeeeeeCCC----ccc-cccccCCCeEEEEEeeEEEEEEEecC----CceEEeeCCCcEEEECCCCeEEEEeCCCCc
Q 040805 178 KYRLGILIANPQ----TFV-TPTHLDADAVFFVSWGQGTITVIREN----NRESYNVKRGDIIRVPSGNTFYVTNTDDDE 248 (540)
Q Consensus 178 ~~rl~~~~l~Pg----gl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~----~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e 248 (540)
..+|+++...|. ++. ++.|.+.+|+++|++|+.+|-+-... ......|++|++++||+|+-|.-....
T Consensus 24 ~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~--- 100 (140)
T 3d0j_A 24 KWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQK--- 100 (140)
T ss_dssp SEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECT---
T ss_pred CEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCC---
Confidence 356666665665 333 44466899999999999999886421 124679999999999999999988754
Q ss_pred cEEEEEEeecCC
Q 040805 249 KLYIVKFIKSIN 260 (540)
Q Consensus 249 ~l~~v~i~~~~~ 260 (540)
...++ ++.|.+
T Consensus 101 e~~vL-LiEp~n 111 (140)
T 3d0j_A 101 DTKMM-YVQDSN 111 (140)
T ss_dssp TCEEE-EEEESC
T ss_pred ceEEE-EEEeCC
Confidence 35555 344554
No 169
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=97.61 E-value=0.00025 Score=62.41 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=53.6
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.+..++....||.+.... ...+|++|||+|+++++. .+.....|++||+++||+|+.--+.-. ++++=+.++
T Consensus 41 ~~~~GvWe~tPG~~~~~~-~~~~E~~~iLeG~~~lt~---ddG~~~~l~aGD~~~~P~G~~gtWev~---e~vrK~~~~ 112 (116)
T 3es4_A 41 GTIVAVWMAEPGIYNYAG-RDLEETFVVVEGEALYSQ---ADADPVKIGPGSIVSIAKGVPSRLEIL---SSFRKLATV 112 (116)
T ss_dssp CCEEEEEEECSEEEEECC-CSEEEEEEEEECCEEEEE---TTCCCEEECTTEEEEECTTCCEEEEEC---SCEEEEEEE
T ss_pred CEEEEEEecCCceeECee-CCCcEEEEEEEeEEEEEe---CCCeEEEECCCCEEEECCCCeEEEEEe---EEEeEEEEE
Confidence 456788899999986443 334599999999998775 345678999999999999998777554 344444443
No 170
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=97.56 E-value=0.0005 Score=63.60 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=67.0
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+..+..+++.||+.+.+|.|+. .+.+||++|+..+. .++ ..+.+||.++.
T Consensus 41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~---e~~--------------------------~~~~~Gd~~~~ 90 (159)
T 3ebr_A 41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRYK---EHD--------------------------WVAHAGSVVYE 90 (159)
T ss_dssp TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEET---TSS--------------------------CCBCTTCEEEE
T ss_pred CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEEe---CCC--------------------------eEECCCeEEEE
Confidence 5778899999999999999976 78899999998752 211 25889999999
Q ss_pred CCCCeEEEEec--CCCCEEEEEEEecCCCCccccccccccccccCCHHHHH
Q 040805 453 PAGHPVVTVAS--QNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKE 501 (540)
Q Consensus 453 PaG~~h~~~n~--~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla 501 (540)
|+|..|...+. +++++.++...+.. ..|+....+++.-++-..+.
T Consensus 91 P~g~~H~~~~~~~~~e~~~~~~~~~G~----l~~~~~~g~~~~~~d~~~~~ 137 (159)
T 3ebr_A 91 TASTRHTPQSAYAEGPDIITFNIVAGE----LLYLDDKDNIIAVENWKTSM 137 (159)
T ss_dssp CSSEEECEEESSSSSSCEEEEEEEESC----EEEECTTCCEEEEECHHHHH
T ss_pred CCCCcceeEeCCCCCCCEEEEEEecCc----cEecCCCCCEEEEcCHHHHH
Confidence 99999998887 66777655432221 12333334455554444333
No 171
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}
Probab=97.47 E-value=0.00087 Score=62.78 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc-----eEEeeCCCcEEEECCCCeEEEEeCCCCccEE
Q 040805 178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR-----ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLY 251 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~-----~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~ 251 (540)
.+.+.+++..||....+|=| ++..+++|++|+.+.++....+. .+..+.+||++++|+|.+|.+.|.++ ++++
T Consensus 68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~-~~aV 146 (171)
T 3eqe_A 68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTS-ERMV 146 (171)
T ss_dssp SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSS-SCEE
T ss_pred CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCC-CCEE
Confidence 34566679999998877755 47889999999999887653222 35789999999999999999999984 7888
Q ss_pred EEEEeecCC
Q 040805 252 IVKFIKSIN 260 (540)
Q Consensus 252 ~v~i~~~~~ 260 (540)
.|-++-|..
T Consensus 147 SlHvY~pp~ 155 (171)
T 3eqe_A 147 SLHVYSPPL 155 (171)
T ss_dssp EEEEEESCC
T ss_pred EEEEeCCCc
Confidence 887775543
No 172
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=97.40 E-value=0.00054 Score=67.49 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=51.8
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.+..+++...||. ..+.+++.+|++|||+|+++++. .+.....+++||+++||+|+.--+.-..
T Consensus 166 ~~~~GiW~~tpG~-~~~~~~~~~E~~~ILeG~v~lt~---~~G~~~~~~aGD~~~~P~G~~~tWev~e 229 (238)
T 3myx_A 166 TLRIGVWDSTPYE-RISRPHKIHELMNLIEGRVVLSL---ENGSSLTVNTGDTVFVAQGAPCKWTSTG 229 (238)
T ss_dssp SCEEEEEEECCEE-BCCEECSSCEEEEEEECCEEEEE---TTSCEEEECTTCEEEECTTCEEEEEESS
T ss_pred CEEEeEEEeCCCE-EECCcCCCCEEEEEEEeEEEEEe---CCCCEEEECCCCEEEECCCCEEEEEECc
Confidence 4677888999998 45656688999999999997764 3456789999999999999987776653
No 173
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=97.40 E-value=0.041 Score=54.60 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=66.9
Q ss_pred ccceeecCCceEEEeccC--cc-ccccccccccce-eeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEE
Q 040805 149 ESSRVTSQHGRVAFLPKF--TQ-RSKLLRGLEKYR-LGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESY 223 (540)
Q Consensus 149 f~~~~~~e~G~i~~l~~f--~~-~~~~L~Gi~~~r-l~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~ 223 (540)
...+-.+++|.+.+...| .. .+|.+.+...+| +....+.|+.-+.||=| +-+.|.||++|+..-. +. -....
T Consensus 30 ~~~rg~~~~gwl~~~~~fsf~~~~dP~~~~fg~l~vln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS-~Gn~~ 106 (256)
T 2vec_A 30 ARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DS-EGNHV 106 (256)
T ss_dssp CCCCSSSCTTGGGCCEEEECCCCCBTTBCSCCCEEEEEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ET-TSCEE
T ss_pred HHHCCCcccCCEEEEEeccCccccCHhHhcCCceEeccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eC-CCCEE
Confidence 334556666633222212 11 124444444444 44556889866667755 4566889999986433 22 23457
Q ss_pred eeCCCcEEEECCC--CeEEEEeCCCCccEEEEEEee
Q 040805 224 NVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 224 ~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~ 257 (540)
.|++|||-+..|| +.|.-.|..+++++.++-|..
T Consensus 107 ~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi 142 (256)
T 2vec_A 107 QASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWL 142 (256)
T ss_dssp EEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEE
T ss_pred EECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEE
Confidence 8999999999876 699999976557888887763
No 174
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=97.28 E-value=0.0011 Score=62.19 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=56.5
Q ss_pred ceeeeeeeCCCcccccccc-C------CCeEEEEEeeEEEEEEEecCCc-------------------eEEeeCCCcEEE
Q 040805 179 YRLGILIANPQTFVTPTHL-D------ADAVFFVSWGQGTITVIRENNR-------------------ESYNVKRGDIIR 232 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~-~------A~ei~yV~~G~g~ig~V~~~~~-------------------~~~~l~~GDv~~ 232 (540)
|-.-++.+.||...+.|+| . -.|=++|+.|.+++.+ ++.. ....|++||.+.
T Consensus 53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt 130 (175)
T 2y0o_A 53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT 130 (175)
T ss_dssp EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence 6666678999988777765 4 4577779999977755 4322 235899999999
Q ss_pred ECCCCeEEEEeCCCCccEEEEEEeecCCC
Q 040805 233 VPSGNTFYVTNTDDDEKLYIVKFIKSINL 261 (540)
Q Consensus 233 iPaG~~h~~~N~g~~e~l~~v~i~~~~~~ 261 (540)
||+|+.||+.|.. +.+ +|.-+.+.+.
T Consensus 131 Ippg~~H~f~age--egv-li~EvSt~~d 156 (175)
T 2y0o_A 131 IPPNTKHWFQAGE--EGA-VVTEMSSTST 156 (175)
T ss_dssp ECTTCCEEEEEEE--EEE-EEEEEEECCC
T ss_pred ECCCCcEEEEeCC--CCE-EEEEEeCCCC
Confidence 9999999999932 344 4455556654
No 175
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=97.25 E-value=0.0023 Score=59.81 Aligned_cols=59 Identities=5% Similarity=0.139 Sum_probs=48.1
Q ss_pred cCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805 382 SKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 382 ~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~ 461 (540)
.||+-+.=|.| ...|+.||++|+..+.+...+ +.-+..|++||+|+||+|.+|.-.
T Consensus 43 Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d~g-----------------------~~~~v~l~eGE~f~lP~gvpH~P~ 98 (174)
T 1yfu_A 43 GPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVDG-----------------------RRERADLKEGDIFLLPPHVRHSPQ 98 (174)
T ss_dssp SCBCCCCEEEC-SSCEEEEEEESCEEEEEEETT-----------------------EEEEEEECTTCEEEECTTCCEEEE
T ss_pred CCCcCccCcCC-CCceEEEEEeeEEEEEEEcCC-----------------------ceeeEEECCCCEEEeCCCCCcCcc
Confidence 56677888876 789999999999999998742 122347999999999999999987
Q ss_pred ecC
Q 040805 462 ASQ 464 (540)
Q Consensus 462 n~~ 464 (540)
+.+
T Consensus 99 r~~ 101 (174)
T 1yfu_A 99 RPE 101 (174)
T ss_dssp BCC
T ss_pred ccC
Confidence 753
No 176
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=97.22 E-value=0.00089 Score=63.80 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=54.7
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+..+..+.+.||+-+.+|+|+ ..++.||++|.-. +.. ..+.+||.+++
T Consensus 124 ~~~v~l~~~~pG~~~p~H~H~-g~E~~~VL~G~f~----de~---------------------------~~~~~Gd~~~~ 171 (195)
T 2q1z_B 124 EAIARLLWIPGGQAVPDHGHR-GLELTLVLQGAFR----DET---------------------------DRFGAGDIEIA 171 (195)
T ss_dssp SSEEEEEEECTTCBCCCCCCS-SCEEEEEEESEEE----CSS---------------------------SEEETTCEEEE
T ss_pred CcEEEEEEECCCCCCCCcCCC-CeEEEEEEEEEEE----CCc---------------------------EEECCCeEEEe
Confidence 356789999999999999995 6799999999843 211 25889999999
Q ss_pred CCCCeEEEEecCCCCEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~ 472 (540)
|.|..|...+.+++++.++.
T Consensus 172 p~g~~H~p~a~~~~gc~~l~ 191 (195)
T 2q1z_B 172 DQELEHTPVAERGLDCICLA 191 (195)
T ss_dssp CSSCCCCCEECSSSCEEEEE
T ss_pred CcCCccCCEeCCCCCEEEEE
Confidence 99999998887566665443
No 177
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=97.11 E-value=0.0021 Score=60.30 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=62.5
Q ss_pred ceEEEEEEcCCCcccccccCC------CcEEEEEEeceEEEEEEcCCCCCCcc---cccccCCCccccCCccceEEeeee
Q 040805 374 ITVSYANISKGAMAAPFYNSR------STKVAVVVAGDGYIEIACPHVSRSSS---ERRHQGSSTREEGSATYHKVSSRI 444 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~------A~ei~yV~~G~g~v~vv~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 444 (540)
+..-.+.|.||.+...|+|+. -.|=.+|+.|.+++.+ ++...... -..|. +..-..-.. -.|
T Consensus 53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~-----~~~~~a~~~--i~L 123 (175)
T 2y0o_A 53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQED-----REHYTVWHE--IEL 123 (175)
T ss_dssp EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGG-----GGGCCCCEE--EEE
T ss_pred ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCc-----eeeecCCcE--EEE
Confidence 788899999999999999999 8888889999977766 32210000 00000 000000012 269
Q ss_pred CCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805 445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA 477 (540)
Q Consensus 445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a 477 (540)
++||.+.||+|.+|++.|. .+++.+..|.+.+
T Consensus 124 ~pGesvtIppg~~H~f~ag-eegvli~EvSt~~ 155 (175)
T 2y0o_A 124 EPGGQYTIPPNTKHWFQAG-EEGAVVTEMSSTS 155 (175)
T ss_dssp CTTCEEEECTTCCEEEEEE-EEEEEEEEEEECC
T ss_pred CCCCEEEECCCCcEEEEeC-CCCEEEEEEeCCC
Confidence 9999999999999999994 3456666664443
No 178
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=97.06 E-value=0.00049 Score=62.40 Aligned_cols=99 Identities=9% Similarity=-0.104 Sum_probs=62.7
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
-.+.++++.||+.+.+|+|+. .+.+||++|+.... .+. |. -...|++||.+++|
T Consensus 44 ~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~--------------------~~-~~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 44 SWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGK--------------------AA-GGDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCG--------------------GG-TSEEEESSEEEEEC
T ss_pred cEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCC--------------------Ee-cceEeCCCEEEEEC
Confidence 457889999999999999985 56689999999853 221 11 01368999999999
Q ss_pred CCCeEE-EEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHc
Q 040805 454 AGHPVV-TVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAF 504 (540)
Q Consensus 454 aG~~h~-~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF 504 (540)
+|..|. ..+. ++..++.+.+. +. .|+....+...-++-.....++
T Consensus 98 ~g~~H~p~~~~--e~~~~l~~~~g---p~-~f~~~~g~~~~~~d~~~~~~~~ 143 (145)
T 2o1q_A 98 ANARHDKTEFP--VASEFYMSFLG---PL-TFVKPDGSPIAVIGWEDAQGAW 143 (145)
T ss_dssp TTCEESCCEEE--EEEEEEEEEES---CE-EEECTTSCEEEEECHHHHHHHH
T ss_pred cCCccCCeECC--CCeEEEEEECC---cc-eecCCCCCEeEEecHHHHHHhh
Confidence 999998 4333 23433332222 22 3443334454445554444443
No 179
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=97.05 E-value=0.18 Score=49.58 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=67.5
Q ss_pred ceeecCCceEEEeccCcc---cccccccccccee-eeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEee
Q 040805 151 SRVTSQHGRVAFLPKFTQ---RSKLLRGLEKYRL-GILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNV 225 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~---~~~~L~Gi~~~rl-~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l 225 (540)
.+-..++|.+++...|.- .+|.+.+...+|+ ....+.||.-+.||=| +-+.|.||++|...-. +. -.....|
T Consensus 9 ~rg~~~~~~l~~~~~fsf~~~~dP~~~~fg~l~v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS-~Gn~~~i 85 (242)
T 1tq5_A 9 ERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DS-MGNKEQV 85 (242)
T ss_dssp GSEEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ES-SSCEEEE
T ss_pred HCCCccCCCEEEEEecccccccChhHhcCCceEeeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eC-CCCcEEE
Confidence 455667777776665542 1233334333332 2345788865566644 5677899999986432 22 2345689
Q ss_pred CCCcEEEECCC--CeEEEEeCCCCccEEEEEEee
Q 040805 226 KRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 226 ~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~ 257 (540)
++|||-+.-|| +.|.-.|..+++++.++-+..
T Consensus 86 ~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv 119 (242)
T 1tq5_A 86 PAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI 119 (242)
T ss_dssp ETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEE
Confidence 99999999766 789999976556788777663
No 180
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=97.04 E-value=0.005 Score=54.98 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=43.8
Q ss_pred cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-C
Q 040805 388 APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-N 466 (540)
Q Consensus 388 ~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e 466 (540)
.||.| +..+|+||++|++.+.+ ++ +. ..|++||+++||+|.+|...+.++ +
T Consensus 32 ~p~~h-~~~~i~~v~~G~~~~~i---~~----------------------~~--~~l~~Gd~~~i~p~~~H~~~~~~~~~ 83 (164)
T 2arc_A 32 RPLGM-KGYILNLTIRGQGVVKN---QG----------------------RE--FVCRPGDILLFPPGEIHHYGRHPEAR 83 (164)
T ss_dssp ETTCC-SSEEEEEEEEECEEEEE---TT----------------------EE--EEECTTCEEEECTTCCEEEEECTTSS
T ss_pred cccCC-CceEEEEEEEeEEEEEE---CC----------------------EE--EEecCCeEEEEcCCCCEEEEeCCCCC
Confidence 58886 67789999999999986 22 23 379999999999999999877643 4
Q ss_pred CEEEEE
Q 040805 467 NLEVVC 472 (540)
Q Consensus 467 ~l~~v~ 472 (540)
+..+..
T Consensus 84 ~~~~~~ 89 (164)
T 2arc_A 84 EWYHQW 89 (164)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 455433
No 181
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19
Probab=97.01 E-value=0.0039 Score=60.04 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=64.1
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEe--cCC-----ceEEeeCCCcEEEECC--CCeEEEEeCCCCc
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIR--ENN-----RESYNVKRGDIIRVPS--GNTFYVTNTDDDE 248 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~--~~~-----~~~~~l~~GDv~~iPa--G~~h~~~N~g~~e 248 (540)
.+-+.++...||....+|-|....+++|++|+....+.. +++ ..+..+.+||++++++ |.+|-+.|...++
T Consensus 78 ~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~ 157 (208)
T 2gm6_A 78 RFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR 157 (208)
T ss_dssp SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred CEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCC
Confidence 345666799999999999887789999999999888754 222 1357899999999999 9999999985466
Q ss_pred cEEEEEEee
Q 040805 249 KLYIVKFIK 257 (540)
Q Consensus 249 ~l~~v~i~~ 257 (540)
+.+.|-++-
T Consensus 158 ~avsLHvY~ 166 (208)
T 2gm6_A 158 VSISIHVYG 166 (208)
T ss_dssp CEEEEEEES
T ss_pred cEEEEEEEc
Confidence 787776663
No 182
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=96.95 E-value=0.0026 Score=57.34 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=52.8
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
..++...|-|.+++|+.||++|+.++.+-..... .. .--.-.|++|++++||+|.-|.-.+
T Consensus 38 ~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~-----------------~~--~d~~V~l~~Ge~yvVPkGveH~p~a 98 (140)
T 3d0j_A 38 IEGIAHLEIHHSTDEQFILSAGKAILITAEKEND-----------------KF--NIELTLMEKGKVYNVPAECWFYSIT 98 (140)
T ss_dssp TTTCCEEEEESSCCEEEEEEESCEEEEEEEEETT-----------------EE--EEEEEECCTTCCEEECTTCEEEEEE
T ss_pred cccCHhhccCCCCCeEEEEEecEEEEEEecCcCC-----------------CC--ccceEEecCCCEEEeCCCccCcccC
Confidence 4577788999999999999999999988753110 00 1112479999999999999999888
Q ss_pred cCCCCEEEEEEE
Q 040805 463 SQNNNLEVVCFE 474 (540)
Q Consensus 463 ~~~e~l~~v~F~ 474 (540)
.. ...++-+.
T Consensus 99 ~~--e~~vLLiE 108 (140)
T 3d0j_A 99 QK--DTKMMYVQ 108 (140)
T ss_dssp CT--TCEEEEEE
T ss_pred CC--ceEEEEEE
Confidence 63 45666553
No 183
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=96.87 E-value=0.0038 Score=58.00 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=55.2
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+..+.++.+.||+.+.+|+|+ ..+.+||++|....+ .++. ..+.+||.+++
T Consensus 42 g~~v~lvr~~pG~~~p~H~H~-g~ee~~VL~G~f~~~---~~~~-------------------------~~~~aGd~~~~ 92 (165)
T 3cjx_A 42 GLMVMRASFAPGLTLPLHFHT-GTVHMYTISGCWYYT---EYPG-------------------------QKQTAGCYLYE 92 (165)
T ss_dssp TEEEEEEEECTTCBCCEEEES-SCEEEEEEESEEEET---TCTT-------------------------SCEETTEEEEE
T ss_pred CcEEEEEEECCCCcCCcccCC-CCEEEEEEEEEEEEC---CCce-------------------------EEECCCeEEEe
Confidence 467889999999999999997 578999999998763 1110 24789999999
Q ss_pred CCCCeEEEEecC--CCCEEEEE
Q 040805 453 PAGHPVVTVASQ--NNNLEVVC 472 (540)
Q Consensus 453 PaG~~h~~~n~~--~e~l~~v~ 472 (540)
|+|..|...+.. ++++..+.
T Consensus 93 P~g~~H~~~a~~~~~~gci~l~ 114 (165)
T 3cjx_A 93 PGGSIHQFNTPRDNEGQTEVIF 114 (165)
T ss_dssp CTTCEECEECCTTCSSCEEEEE
T ss_pred CCCCceeeEeCCCCCCCcEEEE
Confidence 999999988753 33554433
No 184
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=96.84 E-value=0.015 Score=54.45 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=72.8
Q ss_pred ceeecCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCC-------ceE
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENN-------RES 222 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~-------~~~ 222 (540)
.++..+-|.+..+ |..+...+ ....+.-+....||.++-.|+| ...++++|++|+..+.+|+-.. ...
T Consensus 29 ~~~~D~RG~f~e~--~~~~~~~~--~~f~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~ 104 (174)
T 3ejk_A 29 RQIPAEGGPVLHM--LRLDSPQF--SQFGEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQ 104 (174)
T ss_dssp CEECCTTSCEECC--CCTTCTTC--CCCCEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEE
T ss_pred CcEecCCcCEEEE--EecCccCC--CCeeEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEE
Confidence 4455666777776 33322111 1223444445688989888886 5789999999999999987542 256
Q ss_pred EeeC---CCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805 223 YNVK---RGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263 (540)
Q Consensus 223 ~~l~---~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg 263 (540)
+.|. ..-.++||+|+.|-+.|.++ ++++++.+.+...+|.
T Consensus 105 v~Ls~~~n~~~L~IP~G~aHgf~~lsd-~~av~ly~~s~~Y~p~ 147 (174)
T 3ejk_A 105 VTLGRPDNYRLLRIPPQVWYGFAATGD-TPALVANCTDIPHRQG 147 (174)
T ss_dssp EEEETTTBCEEEEECTTCEEEEEECTT-SCEEEEEEESSCCCTT
T ss_pred EEECCccCceEEEeCCCcEEEEEEccC-CCEEEEEECCCccCCC
Confidence 7776 66799999999999999974 2466655554334443
No 185
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=96.82 E-value=0.025 Score=52.95 Aligned_cols=106 Identities=11% Similarity=-0.028 Sum_probs=70.4
Q ss_pred cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCc
Q 040805 350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSST 429 (540)
Q Consensus 350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~ 429 (540)
.+...-|.+.++...+...+... .-+......+|.++..|||..-.++++|++|+..+-+++-...
T Consensus 30 ~~~D~RG~f~e~~~~~~~~~~~f-~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~------------- 95 (174)
T 3ejk_A 30 QIPAEGGPVLHMLRLDSPQFSQF-GEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREK------------- 95 (174)
T ss_dssp EECCTTSCEECCCCTTCTTCCCC-CEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTT-------------
T ss_pred cEecCCcCEEEEEecCccCCCCe-eEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCC-------------
Confidence 45555666666543332111100 1122233478999999999999999999999999999986431
Q ss_pred cccCCccc-eEEeeeeC---CCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805 430 REEGSATY-HKVSSRIR---TDSAYIVPAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 430 ~~~~~~~~-~~~~~~l~---~GDV~vVPaG~~h~~~n~~~e~l~~v~F 473 (540)
+.+| +.....|. ....++||+|++|-+.+.++++.+++.+
T Consensus 96 ----SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~ 139 (174)
T 3ejk_A 96 ----SPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANC 139 (174)
T ss_dssp ----CTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEE
T ss_pred ----CCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEE
Confidence 1111 22344676 5679999999999999986656666655
No 186
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=96.58 E-value=0.35 Score=48.19 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=55.6
Q ss_pred cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEee--CC-----
Q 040805 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNV--KR----- 227 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l--~~----- 227 (540)
+..|.+..+ + |.-.|+.-+.+.++.|++|....-.--+-+-.++.+.|+++|.+ ...++.+ .+
T Consensus 11 ~~~g~~~~i---t---p~~a~~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~----~g~~~~~~g~R~svF~ 80 (270)
T 2qjv_A 11 SESGNIQHI---S---PQNAGWEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA----ADSFFYRIGQRMSPFE 80 (270)
T ss_dssp CSSEEEEEE---C---HHHHTSSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE----TTEEEEEECCCSSGGG
T ss_pred cCCCCEEEe---C---CCCCCcEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE----CCEEEecccccccccc
Confidence 456665554 2 22235555667777889998643333345555778899998887 3455544 22
Q ss_pred ---CcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 228 ---GDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 228 ---GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
.|.++||.|...-+...+ +++|.
T Consensus 81 ~~~p~~lYvp~g~~v~i~a~~---~~~~~ 106 (270)
T 2qjv_A 81 RIPAYSVYLPHHTEAXVTAET---DLELA 106 (270)
T ss_dssp CSCCCEEEECSSCCEEEEESS---SEEEE
T ss_pred CCCCcEEEECCCCEEEEEecC---CceEE
Confidence 599999999987787764 35544
No 187
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=96.55 E-value=0.0049 Score=60.53 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=45.8
Q ss_pred eeCCCc--cccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC
Q 040805 185 IANPQT--FVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT 244 (540)
Q Consensus 185 ~l~Pgg--l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~ 244 (540)
.++... .+.+|||+.-+|+||++|++. .++..+...+.+.+||+++||+|.+|.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~v~~G~~~--~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~ 72 (276)
T 3gbg_A 13 RMSKFDTYIFNNLYINDYKMFWIDSGIAK--LIDKNCLVSYEINSSSIILLKKNSIQRFSLT 72 (276)
T ss_dssp EECTTCEEEEEEEECSSCEEEEESSSCEE--EEETTTTEEEEECTTEEEEECTTCEEEEEEE
T ss_pred hhhcccchhccHhhhcceEEEEEecCceE--EECCccceeEEEcCCCEEEEcCCCceeeccc
Confidence 445543 247888999999999999998 4443333389999999999999999998765
No 188
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}
Probab=96.52 E-value=0.034 Score=51.88 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=63.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
++.+..+...||.-..+|=|.++..+++|++|+...++....+.. .. ..-...|.+||++++
T Consensus 68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~-----------------~~-~~~~~~l~~G~~~~~ 129 (171)
T 3eqe_A 68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEH-----------------AE-LSNSYFVHEGECLIS 129 (171)
T ss_dssp SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSS-----------------EE-EEEEEEEETTCEEEE
T ss_pred CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCc-----------------ee-ecceEEeCCCcEEEe
Confidence 467888999999999999999999999999999998877643210 00 112346899999999
Q ss_pred CCCCeEEEEecCCCCEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVV 471 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v 471 (540)
|.+.+|.+.|.++++.+-|
T Consensus 130 ~~~~iH~V~N~~~~~aVSl 148 (171)
T 3eqe_A 130 TKGLIHKMSNPTSERMVSL 148 (171)
T ss_dssp CTTCEEEEECCSSSCEEEE
T ss_pred CCCCEEEEECCCCCCEEEE
Confidence 9999999999877655433
No 189
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}
Probab=96.48 E-value=0.0044 Score=56.96 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=47.8
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc--eEEeeCCCcEEEECCCCeEEEEe
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--ESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
-..++.+.||+.+.+|+|...+.+|||+|+...+ .+. ..-.+++|+.++-|+|..|+..-
T Consensus 47 ~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~----~Gd~~~~~~~~aGsYv~ePpGs~H~p~~ 108 (153)
T 3bal_A 47 WTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVR----GGEQEGGSTAYAPSYGFESSGALHGKTF 108 (153)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEESEEEET----TCGGGTSEEEESSEEEEECTTCEESCCE
T ss_pred EEEEEEeCCCCCccCccCCCCEEEEEEEEEEEec----CccccCccccCCCeEEEcCCCCccccee
Confidence 3445589999999999999999999999976443 332 23567899999999999998533
No 190
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=96.46 E-value=0.013 Score=54.71 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
||.-+.=| |....++.||++|+..+.+.+.+... . +..+..|++||+|++|+|.+|.-.+
T Consensus 43 Pn~r~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~-----------------~--~~~dv~i~eGdmfllP~gvpHsP~r 102 (176)
T 1zvf_A 43 PNERTDYH-INPTPEWFYQKKGSMLLKVVDETDAE-----------------P--KFIDIIINEGDSYLLPGNVPHSPVR 102 (176)
T ss_dssp SBCCSCEE-ECSSCEEEEEEESCEEEEEEECSSSS-----------------C--EEEEEEECTTEEEEECTTCCEEEEE
T ss_pred CCcCCcCc-CCCCceEEEEEeCEEEEEEEcCCCcc-----------------c--ceeeEEECCCCEEEcCCCCCcCCcc
Confidence 44545556 44678899999999999999843110 0 1223589999999999999999877
Q ss_pred c
Q 040805 463 S 463 (540)
Q Consensus 463 ~ 463 (540)
.
T Consensus 103 ~ 103 (176)
T 1zvf_A 103 F 103 (176)
T ss_dssp C
T ss_pred c
Confidence 5
No 191
>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16
Probab=96.42 E-value=0.052 Score=50.59 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=85.1
Q ss_pred CCceEEEecCCCCC-CCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceE-EEEEEcCCCCCCcccccccCCCccc
Q 040805 354 NFGELFEADSNDFR-PLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG-YIEIACPHVSRSSSERRHQGSSTRE 431 (540)
Q Consensus 354 ~~G~~~~~~~~~~p-~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g-~v~vv~p~~~~~~~~~~~~~~~~~~ 431 (540)
++|++++.....-+ .-.....++.+.-|.+|.....|-+ +|+||-|...|.+ .+.++.|++..
T Consensus 28 EGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~-------------- 92 (170)
T 1yud_A 28 EGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGEL-------------- 92 (170)
T ss_dssp TSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCE--------------
T ss_pred CCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCE--------------
Confidence 66666655543200 1112246788888999999888885 7999999999986 88899997631
Q ss_pred cCCccceEEeeeeCCCcE--EEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHH
Q 040805 432 EGSATYHKVSSRIRTDSA--YIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRAD 509 (540)
Q Consensus 432 ~~~~~~~~~~~~l~~GDV--~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e 509 (540)
.-.++-.++..|++ +|||+|+.....+... +..+|+=-+. |...| + -|.-++++.|.+.|.--.+
T Consensus 93 ----~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g-~~~LV~C~Va---PGF~f-~----dfel~~~~~L~~~~P~~~~ 159 (170)
T 1yud_A 93 ----TTAQLGLDLAAGERPQFLVPKGCIFGSAMNQD-GFSLVGCMVS---PGFTF-D----DFELFSQEALLAMYPQHKA 159 (170)
T ss_dssp ----EEEEESSCTTTTEESCEEECTTCEEEEEESSS-SEEEEEEEES---SCCCG-G----GCCBCBHHHHHHSCCTTHH
T ss_pred ----EEEEeCCCcccCceeEEEECCCCEEEEEECCC-CcEEEEEEEC---CCccC-C----ceEEcCHHHHHhHCchhHH
Confidence 00234456889999 9999999999876622 4444332222 22211 1 1111256666677776666
Q ss_pred HHHHhh
Q 040805 510 EVERVF 515 (540)
Q Consensus 510 ~v~kl~ 515 (540)
.|++|-
T Consensus 160 ~I~~lt 165 (170)
T 1yud_A 160 VVQKLS 165 (170)
T ss_dssp HHTTSC
T ss_pred HHHHhh
Confidence 666664
No 192
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A
Probab=96.23 E-value=0.031 Score=53.42 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=62.3
Q ss_pred cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEe-cCC-------ceEEeeCCCcEEEE-CCCCeEEEEeCCCC
Q 040805 178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIR-ENN-------RESYNVKRGDIIRV-PSGNTFYVTNTDDD 247 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~-~~~-------~~~~~l~~GDv~~i-PaG~~h~~~N~g~~ 247 (540)
.+.+.++...||....+|=|. +-.+++|++|..+..+.. ++. ..+..+.+|||.++ |++.+|.+.|.+.+
T Consensus 69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~ 148 (200)
T 3eln_A 69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT 148 (200)
T ss_dssp TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence 456667799999998888664 889999999999888765 221 12578999999999 88889999998755
Q ss_pred ccEEEEEEee
Q 040805 248 EKLYIVKFIK 257 (540)
Q Consensus 248 e~l~~v~i~~ 257 (540)
++.+-|=++-
T Consensus 149 ~~avSlHvY~ 158 (200)
T 3eln_A 149 EPAVSLHLYS 158 (200)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 6666665553
No 193
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=96.14 E-value=0.035 Score=56.78 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=39.7
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
.++.++++..+.-. -...+..|+.|++|+|.+.. ++ .. ..|++||.|+||
T Consensus 251 F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~----------------------~~--~~l~~G~~~~vp 300 (319)
T 1qwr_A 251 FSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---ED----------------------KT--CPLKKGDHFILP 300 (319)
T ss_dssp CEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEEEC
T ss_pred EEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CC----------------------EE--EEEcCCcEEEEe
Confidence 55666666644221 12357789999999999864 22 22 369999999999
Q ss_pred CCCeEEEEe
Q 040805 454 AGHPVVTVA 462 (540)
Q Consensus 454 aG~~h~~~n 462 (540)
++..-+.+.
T Consensus 301 a~~~~~~i~ 309 (319)
T 1qwr_A 301 AQMPDFTIK 309 (319)
T ss_dssp TTCCCEEEE
T ss_pred CCCceEEEE
Confidence 987544443
No 194
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=96.13 E-value=0.084 Score=47.69 Aligned_cols=99 Identities=6% Similarity=0.028 Sum_probs=69.0
Q ss_pred ceeecCCceEEEeccCccccccccccccceeeeee-eCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCC
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILI-ANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRG 228 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~-l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~G 228 (540)
..+..+-|.+.++.+++. ++ ...-|+.++. +.||...-+|.| ...+++++++|+..+.+-+.....++.|...
T Consensus 11 ~~i~D~RG~L~~~e~~~~----ip-f~ikRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~ 85 (141)
T 2pa7_A 11 KKIIDSRGSLVAIEENKN----IP-FSIKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSP 85 (141)
T ss_dssp CEEEETTEEEEEEETTTT----SS-SCCCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCT
T ss_pred CcEecCCCcEEEEeccCC----CC-CCccEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCC
Confidence 456678899999876432 22 1234555444 348888888855 6889999999999888843334456777555
Q ss_pred c-EEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 229 D-IIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 229 D-v~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+ .+.||+|+-|-+.|-++ ..+++.+.
T Consensus 86 ~~gL~IppgvWh~~~~~s~--~avllvla 112 (141)
T 2pa7_A 86 AVGLYVGPAVWHEMHDFSS--DCVMMVLA 112 (141)
T ss_dssp TEEEEECTTCEEEEECCCT--TCEEEEEE
T ss_pred CcEEEeCCCEEEEEEEcCC--CeEEEEEC
Confidence 5 49999999999999874 35555444
No 195
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=96.09 E-value=0.018 Score=57.61 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA 462 (540)
Q Consensus 383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n 462 (540)
||.-..=| |....|+.|+++|...+.++..+ +..+-.|++|++|++|+|.+|.=.+
T Consensus 40 pN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g-----------------------~~~~V~i~eGemfllP~gv~HsP~r 95 (286)
T 2qnk_A 40 PNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQG-----------------------KHRDVVIRQGEIFLLPARVPHSPQR 95 (286)
T ss_dssp CBCCCCEE-ECSSCEEEEEEESCEEEEEEETT-----------------------EEEEEEECTTEEEEECTTCCEEEEE
T ss_pred CCcCccCc-CCCCCeEEEEEeCeEEEEEEeCC-----------------------ceeeEEECCCeEEEeCCCCCcCCcc
Confidence 33335557 67788999999999999999852 1223479999999999999998777
Q ss_pred cC
Q 040805 463 SQ 464 (540)
Q Consensus 463 ~~ 464 (540)
..
T Consensus 96 ~~ 97 (286)
T 2qnk_A 96 FA 97 (286)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 196
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=96.07 E-value=0.013 Score=55.70 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=47.2
Q ss_pred eeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCc-----------------------------------eEEeeCCC
Q 040805 185 IANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNR-----------------------------------ESYNVKRG 228 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~-----------------------------------~~~~l~~G 228 (540)
-|-|.|...|+|.| .+-++.++.|+=++.++.|... .+..|++|
T Consensus 129 wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pG 208 (235)
T 4gjz_A 129 WFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPG 208 (235)
T ss_dssp EEECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTT
T ss_pred EEeCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCC
Confidence 44565555565554 5678889999999999877421 13589999
Q ss_pred cEEEECCCCeEEEEeCC
Q 040805 229 DIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 229 Dv~~iPaG~~h~~~N~g 245 (540)
|+++||+|..|++.|.+
T Consensus 209 D~LyiP~gW~H~V~~l~ 225 (235)
T 4gjz_A 209 EILFIPVKYWHYVRALD 225 (235)
T ss_dssp CEEEECTTCEEEEEESS
T ss_pred CEEEeCCCCcEEEEECC
Confidence 99999999999999986
No 197
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=96.01 E-value=0.038 Score=48.37 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=48.9
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
+.+..=..+||.....+. ..+|+.||++|++.++.- ++. . ..|++||+++||
T Consensus 42 ~~~GvWe~tPG~~~~~~~--~~~E~~~iLeG~~~lt~d--dG~----------------------~--~~l~aGD~~~~P 93 (116)
T 3es4_A 42 TIVAVWMAEPGIYNYAGR--DLEETFVVVEGEALYSQA--DAD----------------------P--VKIGPGSIVSIA 93 (116)
T ss_dssp CEEEEEEECSEEEEECCC--SEEEEEEEEECCEEEEET--TCC----------------------C--EEECTTEEEEEC
T ss_pred EEEEEEecCCceeECeeC--CCcEEEEEEEeEEEEEeC--CCe----------------------E--EEECCCCEEEEC
Confidence 445555889998775442 234999999999999742 231 1 369999999999
Q ss_pred CCCeEEEEecCCCCEEEEEE
Q 040805 454 AGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 454 aG~~h~~~n~~~e~l~~v~F 473 (540)
+|+.-.+.-. +.+.=+.|
T Consensus 94 ~G~~gtWev~--e~vrK~~~ 111 (116)
T 3es4_A 94 KGVPSRLEIL--SSFRKLAT 111 (116)
T ss_dssp TTCCEEEEEC--SCEEEEEE
T ss_pred CCCeEEEEEe--EEEeEEEE
Confidence 9998876543 34554443
No 198
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19
Probab=95.93 E-value=0.015 Score=56.22 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=62.1
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEe--cCCc-----eEEeeCCCcEEEECCC--CeEEEEeCCCCc
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIR--ENNR-----ESYNVKRGDIIRVPSG--NTFYVTNTDDDE 248 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~--~~~~-----~~~~l~~GDv~~iPaG--~~h~~~N~g~~e 248 (540)
.+-|.++...||....+|=|.+..++.|++|..+..+.. +++. .+..+.+||+++++++ .+|-+.|..+++
T Consensus 72 ~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~ 151 (211)
T 3uss_A 72 RFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDR 151 (211)
T ss_dssp SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred CEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCCC
Confidence 455667799999998888777899999999999887754 2222 2478999999999987 899999986456
Q ss_pred cEEEEEEe
Q 040805 249 KLYIVKFI 256 (540)
Q Consensus 249 ~l~~v~i~ 256 (540)
+.+-|=++
T Consensus 152 ~avSLHvY 159 (211)
T 3uss_A 152 TSISIHVY 159 (211)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEc
Confidence 66666565
No 199
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=95.90 E-value=0.44 Score=50.74 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=42.4
Q ss_pred cceEEEEEEc--CCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805 373 DITVSYANIS--KGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449 (540)
Q Consensus 373 ~isv~~~~L~--pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV 449 (540)
..++.++++. +++ ...+ ......|++|++|+|.+.. ++.. .. ...|++||+
T Consensus 356 eF~v~~~~~~~~~~~~~~~~--~~~~~~illv~~G~g~i~~---~~~~--------------------~~-~~~l~~G~~ 409 (440)
T 1pmi_A 356 EFSVLQTIFDKSKGGKQVIE--GLNGPSIVIATNGKGTIQI---TGDD--------------------ST-KQKIDTGYV 409 (440)
T ss_dssp SCEEEEEECCTTTCCEEEEC--CCSSCEEEEEEESEEEEEE---TTCG--------------------GG-CEEEETTCE
T ss_pred eEEEEEEEecCCCCceeEEe--cCCCcEEEEEEeCeEEEEe---CCcc--------------------cc-eEEeccCCE
Confidence 3667778877 342 2222 2357789999999999874 1100 00 026899999
Q ss_pred EEECCCCeEEEEec
Q 040805 450 YIVPAGHPVVTVAS 463 (540)
Q Consensus 450 ~vVPaG~~h~~~n~ 463 (540)
|+||++....+.+.
T Consensus 410 ~fvpa~~~~~i~g~ 423 (440)
T 1pmi_A 410 FFVAPGSSIELTAD 423 (440)
T ss_dssp EEECTTCCEEEEEC
T ss_pred EEEeCCCcEEEEEe
Confidence 99999966555553
No 200
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=95.89 E-value=0.15 Score=46.04 Aligned_cols=99 Identities=8% Similarity=0.029 Sum_probs=66.7
Q ss_pred CcccCCCceEEEecC-CCCCCCccccceEEEEE-EcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccC
Q 040805 349 PSHSNNFGELFEADS-NDFRPLEDLDITVSYAN-ISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG 426 (540)
Q Consensus 349 P~~~n~~G~~~~~~~-~~~p~L~~l~isv~~~~-L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~ 426 (540)
|.+...-|.+..+.. .+.|- . --.+.++. ..||..+.+|.|...++++++++|+..+.+-+....
T Consensus 11 ~~i~D~RG~L~~~e~~~~ipf-~--ikRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~---------- 77 (141)
T 2pa7_A 11 KKIIDSRGSLVAIEENKNIPF-S--IKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNII---------- 77 (141)
T ss_dssp CEEEETTEEEEEEETTTTSSS-C--CCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCE----------
T ss_pred CcEecCCCcEEEEeccCCCCC-C--ccEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEE----------
Confidence 445667888888876 33333 1 01233333 348889999999999999999999999888332110
Q ss_pred CCccccCCccceEEeeeeC-CCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805 427 SSTREEGSATYHKVSSRIR-TDSAYIVPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~-~GDV~vVPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
+.+ .|. +-..+.||+|..|.+.+.++ +.+++.+.
T Consensus 78 -----------~~~--~L~~~~~gL~IppgvWh~~~~~s~-~avllvla 112 (141)
T 2pa7_A 78 -----------QEI--TLDSPAVGLYVGPAVWHEMHDFSS-DCVMMVLA 112 (141)
T ss_dssp -----------EEE--EECCTTEEEEECTTCEEEEECCCT-TCEEEEEE
T ss_pred -----------EEE--EECCCCcEEEeCCCEEEEEEEcCC-CeEEEEEC
Confidence 222 343 33469999999999999755 46666663
No 201
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19
Probab=95.83 E-value=0.061 Score=51.66 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=60.1
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+.+..+...||.-..+|-|.. ..+++|++|+...++...... +. ..... + ...|.+|++++|
T Consensus 78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~-------g~----~l~~~---~--~~~l~~G~v~~~ 140 (208)
T 2gm6_A 78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGS-------GR----PVLHG---E--PTRLEPGHVEAV 140 (208)
T ss_dssp SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTT-------SC----EEECS---C--CEEECTTCEEEE
T ss_pred CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCC-------Cc----ccccc---c--eEEeCCCCEEEE
Confidence 4778889999999999999986 899999999999988652210 00 00000 0 246999999999
Q ss_pred CC--CCeEEEEec-CCCCEEEE
Q 040805 453 PA--GHPVVTVAS-QNNNLEVV 471 (540)
Q Consensus 453 Pa--G~~h~~~n~-~~e~l~~v 471 (540)
+. |.+|-+.|. +++....|
T Consensus 141 ~~~~g~iH~V~N~~~~~~avsL 162 (208)
T 2gm6_A 141 SPTVGDIHRVHNAYDDRVSISI 162 (208)
T ss_dssp BTTTBCCEEEEESCSSSCEEEE
T ss_pred CCCCCCeEEeccCCCCCcEEEE
Confidence 99 999998875 56655444
No 202
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}
Probab=95.80 E-value=0.024 Score=51.98 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=50.9
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.|..+.++++.||+.+.+|||+ ..+.+||++|....+ .+. |.. ...+.+|+.++
T Consensus 44 ~g~~t~lvr~~pG~~~p~H~H~-g~ee~~VL~G~~~~~----~Gd--------------------~~~-~~~~~aGsYv~ 97 (153)
T 3bal_A 44 TSSWTAIFNCPAGSSFASHIHA-GPGEYFLTKGKMEVR----GGE--------------------QEG-GSTAYAPSYGF 97 (153)
T ss_dssp TTEEEEEEEECTTEEECCEEES-SCEEEEEEESEEEET----TCG--------------------GGT-SEEEESSEEEE
T ss_pred cceEEEEEEeCCCCCccCccCC-CCEEEEEEEEEEEec----Ccc--------------------ccC-ccccCCCeEEE
Confidence 3677889999999999999997 667899999998764 110 000 24578999999
Q ss_pred ECCCCeEEEEe
Q 040805 452 VPAGHPVVTVA 462 (540)
Q Consensus 452 VPaG~~h~~~n 462 (540)
-|+|..|+...
T Consensus 98 ePpGs~H~p~~ 108 (153)
T 3bal_A 98 ESSGALHGKTF 108 (153)
T ss_dssp ECTTCEESCCE
T ss_pred cCCCCccccee
Confidence 99999998543
No 203
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=95.74 E-value=0.023 Score=55.23 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=48.3
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+..+.++.+.||+.+.+|.|+ ..+.+||++|... +.. ..+.+||.++.
T Consensus 42 g~~~~lvr~~pG~~~p~H~H~-g~Ee~~VL~G~f~----d~~---------------------------~~~~~Gd~~~~ 89 (223)
T 3o14_A 42 ARATSIVRYAPGSRFSAHTHD-GGEEFIVLDGVFQ----DEH---------------------------GDYPAGTYVRN 89 (223)
T ss_dssp CEEEEEEEECTTEECCCEECT-TCEEEEEEEEEEE----ETT---------------------------EEEETTEEEEE
T ss_pred ccEEEEEEECCCCCcccccCC-CCEEEEEEEeEEE----ECC---------------------------eEECCCeEEEe
Confidence 446788999999999999985 6799999999964 211 25889999999
Q ss_pred CCCCeEEEEe
Q 040805 453 PAGHPVVTVA 462 (540)
Q Consensus 453 PaG~~h~~~n 462 (540)
|+|..|...+
T Consensus 90 P~g~~H~p~a 99 (223)
T 3o14_A 90 PPTTSHVPGS 99 (223)
T ss_dssp CTTCEECCEE
T ss_pred CCCCccccEe
Confidence 9999998776
No 204
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=95.42 E-value=0.057 Score=55.67 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=47.9
Q ss_pred eeeCC-CccccccccCCCeEEEEEeeEEEEEEE-ecCC----------------------------------ceEEeeCC
Q 040805 184 LIANP-QTFVTPTHLDADAVFFVSWGQGTITVI-RENN----------------------------------RESYNVKR 227 (540)
Q Consensus 184 ~~l~P-ggl~~Ph~~~A~ei~yV~~G~g~ig~V-~~~~----------------------------------~~~~~l~~ 227 (540)
+-+.| |+.+.|||-..+-++..+.|+=++.+. .|.. .....|++
T Consensus 145 ~~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~p 224 (342)
T 1vrb_A 145 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP 224 (342)
T ss_dssp EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred EEEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECC
Confidence 45556 667777775566777888899888888 4431 13468999
Q ss_pred CcEEEECCCCeEEEEeCC
Q 040805 228 GDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 228 GDv~~iPaG~~h~~~N~g 245 (540)
||+++||+|..|++.+.+
T Consensus 225 GD~LyiP~gwwH~v~s~~ 242 (342)
T 1vrb_A 225 GTMLYLPRGLWHSTKSDQ 242 (342)
T ss_dssp TCEEEECTTCEEEEECSS
T ss_pred CcEEEeCCCccEEEEECC
Confidence 999999999999999984
No 205
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=95.41 E-value=0.26 Score=51.72 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=40.6
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
..++.++++.++.. ++..++..|+.|++|++.+.. . + .. ..|++||+++|
T Consensus 323 ~F~v~~~~l~~~~~---~~~~~~~~il~v~~G~~~l~~--~-~----------------------~~--~~l~~G~~~fv 372 (394)
T 2wfp_A 323 DFAFSLHDLALQET---SIGQHSAAILFCVEGEAVLRK--D-E----------------------QR--LVLKPGESAFI 372 (394)
T ss_dssp SCEEEEEECCSSCE---EECCSSCEEEEEEEEEEEEEE--T-T----------------------EE--EEECTTCEEEE
T ss_pred EEEEEEEEEcCCeE---EecCCCcEEEEEEeceEEEEE--C-C----------------------eE--EEEccCcEEEE
Confidence 35677777775532 234467789999999998753 2 1 12 36999999999
Q ss_pred CCCCeEEEE
Q 040805 453 PAGHPVVTV 461 (540)
Q Consensus 453 PaG~~h~~~ 461 (540)
|++..-+.+
T Consensus 373 pa~~~~~~i 381 (394)
T 2wfp_A 373 GADESPVNA 381 (394)
T ss_dssp CGGGCCEEE
T ss_pred eCCCceEEE
Confidence 998644433
No 206
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=95.10 E-value=0.089 Score=49.86 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=51.5
Q ss_pred EEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCC----cccccc-cCC-----Cc-ccc-CCccceEEeee
Q 040805 377 SYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS----SSERRH-QGS-----ST-REE-GSATYHKVSSR 443 (540)
Q Consensus 377 ~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~----~~~~~~-~~~-----~~-~~~-~~~~~~~~~~~ 443 (540)
..+-|.++|- ..+|+.+. +-+..++.|+=++.++.|..... ...... .+. .. ++. .-...+.+...
T Consensus 126 ~~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~ 204 (235)
T 4gjz_A 126 INAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCI 204 (235)
T ss_dssp EEEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEE
T ss_pred eEEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEE
Confidence 3445555554 45577654 56888999999999998853200 000000 000 00 000 00001335567
Q ss_pred eCCCcEEEECCCCeEEEEecC
Q 040805 444 IRTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 444 l~~GDV~vVPaG~~h~~~n~~ 464 (540)
|++||+++||+|+.|...|.+
T Consensus 205 l~pGD~LyiP~gW~H~V~~l~ 225 (235)
T 4gjz_A 205 LSPGEILFIPVKYWHYVRALD 225 (235)
T ss_dssp ECTTCEEEECTTCEEEEEESS
T ss_pred ECCCCEEEeCCCCcEEEEECC
Confidence 999999999999999998874
No 207
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=95.10 E-value=0.056 Score=52.82 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=46.5
Q ss_pred ceEEEEEEcCCCc--ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 374 ITVSYANISKGAM--AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 374 isv~~~~L~pggm--~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
.-+....|..... +.+||| +.-+|+||++|.+. .++..+. .. ..|.+||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~--~i~~~~~---------------------~~--~~l~~g~l~~ 60 (276)
T 3gbg_A 7 FQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK--LIDKNCL---------------------VS--YEINSSSIIL 60 (276)
T ss_dssp EEEEEEEECTTCEEEEEEEEC-SSCEEEEESSSCEE--EEETTTT---------------------EE--EEECTTEEEE
T ss_pred hhhhhhhhhcccchhccHhhh-cceEEEEEecCceE--EECCccc---------------------ee--EEEcCCCEEE
Confidence 3345555565554 478996 88899999999999 4443210 02 3799999999
Q ss_pred ECCCCeEEEEec
Q 040805 452 VPAGHPVVTVAS 463 (540)
Q Consensus 452 VPaG~~h~~~n~ 463 (540)
||+|.+|.+...
T Consensus 61 i~p~~~h~~~~~ 72 (276)
T 3gbg_A 61 LKKNSIQRFSLT 72 (276)
T ss_dssp ECTTCEEEEEEE
T ss_pred EcCCCceeeccc
Confidence 999999987654
No 208
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=94.98 E-value=0.11 Score=53.51 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred EEEcC-CCcccccccCCCcEEEEEEeceEEEEEE-cCCCC--CCc-c-ccc-c------c-CCCc-cccCCccceEEeee
Q 040805 379 ANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIA-CPHVS--RSS-S-ERR-H------Q-GSST-REEGSATYHKVSSR 443 (540)
Q Consensus 379 ~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv-~p~~~--~~~-~-~~~-~------~-~~~~-~~~~~~~~~~~~~~ 443 (540)
+-+.| |+-..|||.+ .+-++..+.|+=++.+. .|... ... . ... . . -.++ .+.... ..+...
T Consensus 145 ~~~gp~g~~~~~H~D~-~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~ 221 (342)
T 1vrb_A 145 VYAAKNGGGFKAHFDA-YTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLP--DAEIVN 221 (342)
T ss_dssp EEEECSSCCCCSEECS-SEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCC--SSEEEE
T ss_pred EEEeCCCCCCCCeECC-hhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccC--CceEEE
Confidence 45555 8899999964 45688888999999999 66532 000 0 000 0 0 0000 000001 235567
Q ss_pred eCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805 444 IRTDSAYIVPAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 444 l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~ 474 (540)
|.+|||++||+|++|+..+.+++...-++|.
T Consensus 222 L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~ 252 (342)
T 1vrb_A 222 LTPGTMLYLPRGLWHSTKSDQATLALNITFG 252 (342)
T ss_dssp ECTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred ECCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence 9999999999999999988743333335554
No 209
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=94.93 E-value=0.2 Score=50.68 Aligned_cols=57 Identities=7% Similarity=0.089 Sum_probs=38.4
Q ss_pred CCCeEEEEEe-eEEEEEEEecCC------------------ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805 198 DADAVFFVSW-GQGTITVIRENN------------------RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258 (540)
Q Consensus 198 ~A~ei~yV~~-G~g~ig~V~~~~------------------~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~ 258 (540)
.-+|++|++. .++.+|+-.... .....|++||+|+||||++|.+-. | . ++-+-.+
T Consensus 116 gKpE~~y~L~~~~~~~Gf~~~~~~~~~~~~l~~~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~~-G----~-~~Eiqa~ 189 (300)
T 1zx5_A 116 GVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGEG-L----R-VLEVSSN 189 (300)
T ss_dssp CCCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEEEES-E----E-EEEEEES
T ss_pred CCcEEEEEcccHHHhhCCCCCCCHHHHHHHHHhCchhHHHHhceeECCCCCEEEcCCCCceEcCC-C----C-eeeeccc
Confidence 4578888887 577778643211 123589999999999999999833 2 3 5555544
Q ss_pred CC
Q 040805 259 IN 260 (540)
Q Consensus 259 ~~ 260 (540)
|+
T Consensus 190 SD 191 (300)
T 1zx5_A 190 ST 191 (300)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 210
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=94.83 E-value=0.16 Score=54.17 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=52.9
Q ss_pred EEEEEcCCCccc--ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 377 SYANISKGAMAA--PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 377 ~~~~L~pggm~~--PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
..+-+.|+|-.. |||. ..+-+++.+.|+=++.+..|..+.....+..- +.+... ..+...|.+|||++||+
T Consensus 141 ~n~y~~~~g~~g~~~H~D-~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~----~~~~~~--~~~~~~L~pGD~LYiP~ 213 (442)
T 2xdv_A 141 SNVYITPAGSQGLPPHYD-DVEVFILQLEGEKHWRLYHPTVPLAREYSVEA----EERIGR--PVHEFMLKPGDLLYFPR 213 (442)
T ss_dssp EEEEEECTTCBCSCSEEC-SSEEEEEEEESCEEEEEECCSSTTCSSCEECC----TTTSCS--CSEEEEECTTCEEEECT
T ss_pred cceEECCCCCCCccceEC-CcceEEEEEEeEEEEEEccCCCCccccCCCCc----hhhcCC--cceEEEECCCcEEEECC
Confidence 345667777655 9995 45668888899999999988642100000000 000111 23456799999999999
Q ss_pred CCeEEEEecC
Q 040805 455 GHPVVTVASQ 464 (540)
Q Consensus 455 G~~h~~~n~~ 464 (540)
|++|+..+..
T Consensus 214 g~~H~~~s~~ 223 (442)
T 2xdv_A 214 GTIHQADTPA 223 (442)
T ss_dssp TCEEEEECCS
T ss_pred CceEEEEecC
Confidence 9999988764
No 211
>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A
Probab=94.82 E-value=0.25 Score=47.09 Aligned_cols=100 Identities=9% Similarity=0.092 Sum_probs=66.4
Q ss_pred ceeecCCceEEEeccCcccccccc--cc-ccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC----
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GL-EKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN---- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi-~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~---- 219 (540)
.++..+-|.+..+ |... .|. |+ ...++.+..-.+|.++--||+. ...+++|++|+...-+|+-..
T Consensus 38 ~~~~D~RG~f~e~--~~~~--~f~~~gi~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpT 113 (196)
T 1wlt_A 38 KVFPDKRGFFLEV--FKSE--DFTKMRIPNVIQTNMSFSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPT 113 (196)
T ss_dssp CCEEETTEEEEEE--EEHH--HHHHTTCCCEEEEEEEEECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTT
T ss_pred CceecCCcCEEEE--Eecc--hhhhcCCCCEEEEEEEECCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCC
Confidence 3445556666665 3321 111 21 1234444455789888888875 479999999999888887542
Q ss_pred ---ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 220 ---RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 220 ---~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
...+.|.+ +..++||+|+.|-+.|.++ ...++...
T Consensus 114 fG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd--~a~~ly~~ 153 (196)
T 1wlt_A 114 FGKYVKAELNEENHYMLWIPPGFAHGFQALED--SIVIYFIT 153 (196)
T ss_dssp TTCEEEEEEETTTCCEEEECTTEEEEEEESSS--EEEEEEEE
T ss_pred CCeEEEEEecCCCCCEEEeCCCeEEEEEEcCC--CeEEEEEe
Confidence 25667764 7999999999999999974 34444333
No 212
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Probab=94.70 E-value=0.22 Score=47.45 Aligned_cols=106 Identities=12% Similarity=0.000 Sum_probs=73.7
Q ss_pred ceeecCCceEEEeccCcccccccc--ccc--c-----ceeeeeeeCCCccccccccCCCeEEEEEe-eEEEEEEEecC--
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GLE--K-----YRLGILIANPQTFVTPTHLDADAVFFVSW-GQGTITVIREN-- 218 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~--~-----~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~-G~g~ig~V~~~-- 218 (540)
.++..+-|.+... |... .+. |+. . .+.-+..-.+|.++-.|+|.-..+++|++ |+...-+|+-.
T Consensus 27 ~~~~D~RG~f~e~--f~~~--~~~~~g~~~~F~~~~i~Q~n~S~s~~GvlRGlH~h~q~Klv~~~~~G~v~dV~VDlR~S 102 (197)
T 1nxm_A 27 PVHGDNRGWFKEN--FQKE--KMLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREG 102 (197)
T ss_dssp CEEEETTEEEEEE--EEHH--HHTTTTCCGGGGTTCCCEEEEEEEETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSS
T ss_pred ceEeeCCcCEEEE--echH--HHHHcCCCcccccCceEEEEEEECCCCCcceeeecccceEEEEcCCCEEEEEEEECCCC
Confidence 4556677777664 4432 111 322 2 45544455788888889888889999999 99988888864
Q ss_pred ----CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 219 ----NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 219 ----~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
....+.|..+..++||+|+.|-+.+..+ ...++...+...+|
T Consensus 103 pTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd--~a~~~y~~s~~Y~p 148 (197)
T 1nxm_A 103 ETFGNTYQTVIDASKSIFVPRGVANGFQVLSD--FVAYSYLVNDYWAL 148 (197)
T ss_dssp TTTTCEEEEEECTTEEEEECTTEEEEEEECSS--EEEEEEEESSCCCG
T ss_pred CCCCeEEEEEeCCCcEEEeCCCeEEEEEeccC--CeEEEEECCCccCh
Confidence 3356788889999999999999999873 35554444333344
No 213
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A
Probab=94.66 E-value=0.27 Score=47.17 Aligned_cols=106 Identities=9% Similarity=0.094 Sum_probs=70.7
Q ss_pred ceeecCCceEEEeccCcccccccc---c---cccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC-
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR---G---LEKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~---G---i~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~- 219 (540)
.++..+-|.+..+ |... .|. | ....+..+..-.+|.++--|++. ...+++|++|+...-+|+-..
T Consensus 17 ~~~~D~RG~f~e~--~~~~--~f~~~~g~~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~ 92 (205)
T 1oi6_A 17 RVFADDRGLLILP--YQEE--AFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVG 92 (205)
T ss_dssp CCEEETTEEEECS--CBHH--HHHHHHSSCCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBT
T ss_pred CeEecCCcCEEEE--eehh--hhHhhcCCCCCCEEEEEEEeCCCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCC
Confidence 3556677777765 5432 111 2 23345555556789888888874 589999999999888887542
Q ss_pred ------ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 220 ------RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 220 ------~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
...+.|.+ +..++||+|+.|-+.|.+++ ..++...+...+|
T Consensus 93 SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~Y~p 141 (205)
T 1oi6_A 93 SPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD--TVMSYMLSRSYVT 141 (205)
T ss_dssp CTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT--EEEEEEESSCCCG
T ss_pred CCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC--eEEEEecCCccCH
Confidence 24567755 68999999999999999744 4444444333334
No 214
>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}
Probab=94.55 E-value=2.3 Score=42.40 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=46.2
Q ss_pred eCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccEEEEEEe
Q 040805 186 ANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 186 l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.|+.-+.||=| +-+-|.||++|...-. +. -...-.|++|||-+.-|| +.|.=.|.. +.++..+=+.
T Consensus 46 ~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS-~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~-~~~~~~lQlW 115 (277)
T 2p17_A 46 IFERGTFDVHPHRGIETVTYVISGELEHF--DS-KAGHSTLGPGDVQWMTAGRGVVHKEDPAS-GSTVHSLQLW 115 (277)
T ss_dssp EECTTCCCCEEECSEEEEEEEEESCEEEE--ET-TTEEEEECTTCEEEEECTTCEEEEEEECT-TCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eC-CCCceEECCCeEEEEeCCCCEEEEeecCC-CCCEEEEEEE
Confidence 355554466644 5677899999985332 22 234578999999999987 578888975 4567766554
No 215
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A
Probab=94.54 E-value=0.3 Score=46.55 Aligned_cols=88 Identities=8% Similarity=0.006 Sum_probs=63.1
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+++..+...||.-..+|=|.++.-+++|++|....++..-.... . . . . -..-...|.+|||.++
T Consensus 69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~-------~--~---~--l-~~~~~~~l~~G~v~~~ 133 (200)
T 3eln_A 69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKK-------S--N---E--M-IKKSERTLRENQCAYI 133 (200)
T ss_dssp TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSS-------C--C---C--C-CEEEEEEECTTCEEEE
T ss_pred ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCC-------c--c---c--c-cccceEEeCCCCEEEe
Confidence 367788999999999999999999999999999999876532110 0 0 0 0 0122357899999999
Q ss_pred -CCCCeEEEEecC-CCCEEEEEEEecC
Q 040805 453 -PAGHPVVTVASQ-NNNLEVVCFEINA 477 (540)
Q Consensus 453 -PaG~~h~~~n~~-~e~l~~v~F~~~a 477 (540)
|.+..|.+.|.+ ++. .|++++.+
T Consensus 134 ~~~~giH~V~N~s~~~~--avSlHvY~ 158 (200)
T 3eln_A 134 NDSIGLHRVENVSHTEP--AVSLHLYS 158 (200)
T ss_dssp CTTTCEEEEECCCSSCC--EEEEEEEE
T ss_pred cCCCcEEEEECCCCCCC--EEEEEeCC
Confidence 889999998875 443 34444333
No 216
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=94.39 E-value=0.11 Score=53.73 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=56.3
Q ss_pred EEEc-CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC----Cccc--ccccCC---Ccc-ccCCc---cceEEeeee
Q 040805 379 ANIS-KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR----SSSE--RRHQGS---STR-EEGSA---TYHKVSSRI 444 (540)
Q Consensus 379 ~~L~-pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~----~~~~--~~~~~~---~~~-~~~~~---~~~~~~~~l 444 (540)
+-|. +|+...+||.+. +-|..++.|+=++.++.|.... .... ..+.+. ... -+.-. ....+...|
T Consensus 187 l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l 265 (349)
T 3d8c_A 187 LLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV 265 (349)
T ss_dssp EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred EEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEE
Confidence 4455 556778899766 6789999999999999986420 0000 000000 000 00000 013466789
Q ss_pred CCCcEEEECCCCeEEEEecCCCCEEE
Q 040805 445 RTDSAYIVPAGHPVVTVASQNNNLEV 470 (540)
Q Consensus 445 ~~GDV~vVPaG~~h~~~n~~~e~l~~ 470 (540)
++||+++||+|+.|+..+.++..+.+
T Consensus 266 ~pGD~LyiP~gWwH~V~~l~d~~~si 291 (349)
T 3d8c_A 266 GPGDVLYIPMYWWHHIESLLNGGITI 291 (349)
T ss_dssp CTTCEEEECTTCEEEEEECTTSCCEE
T ss_pred CCCCEEEECCCCcEEEEEcCCCCcEE
Confidence 99999999999999999875334443
No 217
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=94.34 E-value=0.16 Score=52.34 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=46.2
Q ss_pred eeC-CCccccccccCCCeEEEEEeeEEEEEEEecCC------------------------------------ceEEeeCC
Q 040805 185 IAN-PQTFVTPTHLDADAVFFVSWGQGTITVIRENN------------------------------------RESYNVKR 227 (540)
Q Consensus 185 ~l~-Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~------------------------------------~~~~~l~~ 227 (540)
-|- +|+...+|+-..+-|..++.|+=++.++.|.. .....|++
T Consensus 188 ~iG~~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~p 267 (349)
T 3d8c_A 188 LIGMEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGP 267 (349)
T ss_dssp EEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECT
T ss_pred EEECCCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECC
Confidence 444 44555555533567888999999988887642 13468999
Q ss_pred CcEEEECCCCeEEEEeCC
Q 040805 228 GDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 228 GDv~~iPaG~~h~~~N~g 245 (540)
||+++||+|..|++.|.+
T Consensus 268 GD~LyiP~gWwH~V~~l~ 285 (349)
T 3d8c_A 268 GDVLYIPMYWWHHIESLL 285 (349)
T ss_dssp TCEEEECTTCEEEEEECT
T ss_pred CCEEEECCCCcEEEEEcC
Confidence 999999999999999986
No 218
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}
Probab=94.33 E-value=0.3 Score=46.77 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=68.9
Q ss_pred ceeecCCceEEEeccCcccccccc--cc--ccceeeee-eeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GL--EKYRLGIL-IANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN-- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi--~~~rl~~~-~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~-- 219 (540)
.++..+-|.+..+ |... .|. |+ ...+..+. ...+|.++-.||+. -.++++|++|++..-+|+-..
T Consensus 41 ~~~~D~RG~F~E~--~~~~--~f~~~gi~~~f~Q~n~S~S~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~S 116 (205)
T 3ryk_A 41 RLFGDDRGFFTES--YNKK--VLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDS 116 (205)
T ss_dssp CEEEETTEEEEEE--EEHH--HHHHTTCCCCCCEEEEEEESSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTS
T ss_pred CeEeeCCCCEEEE--eehH--HHHHcCCCCCeeEEEEEEeCCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCC
Confidence 4556666776654 4321 121 21 22333332 33789999889874 589999999999888887531
Q ss_pred -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805 220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263 (540)
Q Consensus 220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg 263 (540)
...+.|.+ +-.++||+|+.|-+.|.+++ ..++...+...+|.
T Consensus 117 pTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~--a~~~Y~~s~~Y~p~ 165 (205)
T 3ryk_A 117 PTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH--TIVMYKVDEYYSAD 165 (205)
T ss_dssp TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS--EEEEEEESSCCCTT
T ss_pred CCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC--EEEEEEcCCCcCCC
Confidence 14567754 89999999999999999743 44443443333443
No 219
>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1
Probab=94.30 E-value=0.42 Score=46.15 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=71.0
Q ss_pred ceeecCCceEEEeccCcccccccc---cc--ccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR---GL--EKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN-- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~---Gi--~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~-- 219 (540)
.++..+-|.+..+ |... .+. |+ ...+..+..-.+|.++--||+. ...+++|++|++..-+|+-..
T Consensus 26 ~~~~D~RG~F~e~--~~~~--~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~S 101 (216)
T 2c0z_A 26 EQRADPRGVFLDW--YHVD--RFAEAIGRPLRLAQANLSVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGS 101 (216)
T ss_dssp EEEEETTEEEEEC--CCHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTC
T ss_pred CeEecCCcCEEEE--eehh--HHHHhcCCCCCEEEEEEEeCCCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCC
Confidence 4566677887765 5432 221 22 2344444455689898888875 589999999999888887542
Q ss_pred -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805 220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263 (540)
Q Consensus 220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg 263 (540)
...+.|.+ +..++||+|+.|-+.|.+++ ..++...+...+|.
T Consensus 102 pTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~--a~~ly~~s~~Y~p~ 150 (216)
T 2c0z_A 102 PTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE--ATLCYLSSGTYDPA 150 (216)
T ss_dssp TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSCCCTT
T ss_pred CCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC--eEEEEecCCccCHH
Confidence 24566755 57999999999999999743 44444443333443
No 220
>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*
Probab=94.10 E-value=0.51 Score=45.83 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=70.6
Q ss_pred ceeecCCceEEEeccCcccccccc---c--cccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR---G--LEKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN-- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~---G--i~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~-- 219 (540)
.++..+-|.+..+ |... .+. | ....+..+..-.+|.++--||+. ...+++|++|++..-+|+-..
T Consensus 37 ~~~~D~RG~F~e~--~~~~--~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~S 112 (225)
T 1upi_A 37 TIHVDSRGLFFEW--LTDH--GFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGS 112 (225)
T ss_dssp CEEEETTEEEECS--CCHH--HHHHHHSSCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTC
T ss_pred ceEecCCcCEEEE--eehh--hHHHhcCCCCCeEEEEEEeCCCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCC
Confidence 4556667777764 5432 121 2 23345545556789898888875 489999999999888887542
Q ss_pred -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805 220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263 (540)
Q Consensus 220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg 263 (540)
...+.|.+ +..++||+|+.|-+.|.+++ .+++...+...+|.
T Consensus 113 pTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~--a~vly~~s~~Y~p~ 161 (225)
T 1upi_A 113 PTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN--STVMYLCSAEYNPQ 161 (225)
T ss_dssp TTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS--EEEEEEESSCCCTT
T ss_pred CCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC--EEEEEecCCccCHH
Confidence 24566654 58999999999999999744 44444443333443
No 221
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=94.05 E-value=0.14 Score=52.47 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=44.7
Q ss_pred CCCccccccccCCCeEEEEEeeEEEEEEEecCC-------------------------------ceEEeeCCCcEEEECC
Q 040805 187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENN-------------------------------RESYNVKRGDIIRVPS 235 (540)
Q Consensus 187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~-------------------------------~~~~~l~~GDv~~iPa 235 (540)
.+|+.+.+|+-..+-++.++.|+=++.+..|.. .....|++||+++||+
T Consensus 175 ~~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~ 254 (338)
T 3al5_A 175 SPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPA 254 (338)
T ss_dssp CTTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECT
T ss_pred CCCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECC
Confidence 344454555544566778899999988887631 2356899999999999
Q ss_pred CCeEEEEeCC
Q 040805 236 GNTFYVTNTD 245 (540)
Q Consensus 236 G~~h~~~N~g 245 (540)
|..|++.|.+
T Consensus 255 gWwH~v~~l~ 264 (338)
T 3al5_A 255 LWFHNVISEE 264 (338)
T ss_dssp TCEEEEEESS
T ss_pred CCeEEEeeCC
Confidence 9999999985
No 222
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=94.02 E-value=0.26 Score=52.55 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=45.6
Q ss_pred eCCCccc-cccccCCCeEEEEEeeEEEEEEEecCC-----------------ceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 186 ANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENN-----------------RESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 186 l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~-----------------~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
-.+|+.. .|||-..+-++..+.|+=++.+..|.. .....|++||+++||+|+.|+..+.+
T Consensus 146 ~~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 146 TPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp ECTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred CCCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 3455554 477755666777888998888877642 13578999999999999999999875
No 223
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Probab=94.00 E-value=5.6 Score=39.85 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=47.2
Q ss_pred eeeCCCcccccccc-CCCeEEEEE-eeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccEEEEEEe
Q 040805 184 LIANPQTFVTPTHL-DADAVFFVS-WGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~-~A~ei~yV~-~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~ 256 (540)
+.+.|+.-+.||=| +-+-|.||+ +|...-. +. -...-.|++|||-+.-|| +.|.=.|.+ +.++..+=+.
T Consensus 45 ~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS-~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~-~~~~~~lQlW 117 (290)
T 1j1l_A 45 FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DF-CGHTGKMNPGDLQWMTAGRGILHAEMPCS-EEPAHGLQLW 117 (290)
T ss_dssp EEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ET-TSCEEEECTTCEEEEECTTCEEEEEEECS-SSCEEEEEEE
T ss_pred cccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eC-CCCceEECCCcEEEEeCCCCEEEEeEcCC-CCCEEEEEEE
Confidence 34567644466644 566789999 9976433 22 224568999999999987 578888874 4577776555
No 224
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*
Probab=93.97 E-value=0.39 Score=45.19 Aligned_cols=106 Identities=8% Similarity=-0.017 Sum_probs=69.7
Q ss_pred ceeecCCceEEEeccCcccccccc---c--cccceeeeeeeCCCcccccccc---CCCeEEEEEeeEEEEEEEecCC---
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR---G--LEKYRLGILIANPQTFVTPTHL---DADAVFFVSWGQGTITVIRENN--- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~---G--i~~~rl~~~~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~~--- 219 (540)
.++..+-|.+..+ |... .+. | ....+..+..-.+|.++--|++ ....+++|++|+...-+|+-..
T Consensus 20 ~~~~D~RG~f~e~--~~~~--~~~~~~g~~~~f~Q~n~S~s~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~Sp 95 (184)
T 2ixk_A 20 RVFGDDRGFFFES--YNQR--AFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSP 95 (184)
T ss_dssp CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTST
T ss_pred ceEecCCccEEEE--eehh--hhHhhcCCCCCEEEEEEEeCCCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCC
Confidence 4566677777775 4432 111 1 1234444445568988888877 4689999999999888887542
Q ss_pred ----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 220 ----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 220 ----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
...+.|.+ +..++||+|+.|-+.|.++ ...++...+...+|
T Consensus 96 Tfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd--~a~~~y~~s~~Y~p 142 (184)
T 2ixk_A 96 TFGQWVGERLSAENKRQMWIPAGFAHGFVVLSE--YAEFLYKTTDFWAP 142 (184)
T ss_dssp TTTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESSCCCG
T ss_pred CCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCC--CEEEEEeCCCccCh
Confidence 24566654 6899999999999999974 35555444333333
No 225
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=93.95 E-value=0.3 Score=50.02 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=56.0
Q ss_pred ceEEEEEEcCC-CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCccccccc--C-----CCccc-cC-CccceEEeee
Q 040805 374 ITVSYANISKG-AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQ--G-----SSTRE-EG-SATYHKVSSR 443 (540)
Q Consensus 374 isv~~~~L~pg-gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~--~-----~~~~~-~~-~~~~~~~~~~ 443 (540)
+....+-|.+. +-..+||.+. +-+..++.|+=++.++.|..... =...+. + ...-+ -. -.....+...
T Consensus 166 ~~~s~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~-ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~ 243 (338)
T 3al5_A 166 FFSSVFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQY-LYLKGTKSEVLNIDNPDLAKYPLFSKARRYECS 243 (338)
T ss_dssp EEEEEEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGG-GTEETTEESCCCSSSCCTTTCTTGGGCCEEEEE
T ss_pred cccceeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccc-cccCCCCcccccCCCcchhhCcccccCCCEEEE
Confidence 33344555554 4556699764 56888999999999999853200 000000 0 00000 00 0001346678
Q ss_pred eCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805 444 IRTDSAYIVPAGHPVVTVASQNNNLEV 470 (540)
Q Consensus 444 l~~GDV~vVPaG~~h~~~n~~~e~l~~ 470 (540)
|++||+++||+|+.|+..|.+ ..+.+
T Consensus 244 L~pGD~LyiP~gWwH~v~~l~-~sisv 269 (338)
T 3al5_A 244 LEAGDVLFIPALWFHNVISEE-FGVGV 269 (338)
T ss_dssp ECTTCEEEECTTCEEEEEESS-CEEEE
T ss_pred ECCCCEEEECCCCeEEEeeCC-CEEEE
Confidence 999999999999999999873 34444
No 226
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.87 E-value=0.23 Score=53.08 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=47.7
Q ss_pred eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP 234 (540)
+-+-|.+...+.|.| +.-|..|+.|+=+.-++.|+.. ....+++||+++||
T Consensus 235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIP 314 (447)
T 3kv4_A 235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP 314 (447)
T ss_dssp EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecC
Confidence 455566555555643 5568899999999988877521 23588999999999
Q ss_pred CCCeEEEEeCC
Q 040805 235 SGNTFYVTNTD 245 (540)
Q Consensus 235 aG~~h~~~N~g 245 (540)
+|..|+++|..
T Consensus 315 sGWwH~V~nle 325 (447)
T 3kv4_A 315 TGWIHAVLTPV 325 (447)
T ss_dssp TTCEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 99999999986
No 227
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=93.86 E-value=0.2 Score=53.90 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCCccc-cccccCCCeEEEEEeeEEEEEEEecCCc---------------------eEEeeCCCcEEEECCCCeEEEEeC
Q 040805 187 NPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNR---------------------ESYNVKRGDIIRVPSGNTFYVTNT 244 (540)
Q Consensus 187 ~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~---------------------~~~~l~~GDv~~iPaG~~h~~~N~ 244 (540)
.||+.. .|||-+-+-++.-+.|+=+..+..|... ....|++||+++||+|+.|+..+.
T Consensus 172 p~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~ 251 (489)
T 4diq_A 172 PPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQ 251 (489)
T ss_dssp CSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBC
T ss_pred CCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEec
Confidence 444443 5666555666666777777777765421 247899999999999999999998
Q ss_pred CCCccEE
Q 040805 245 DDDEKLY 251 (540)
Q Consensus 245 g~~e~l~ 251 (540)
++.-.+.
T Consensus 252 ~~~~Slh 258 (489)
T 4diq_A 252 DGVHSLH 258 (489)
T ss_dssp SSCCEEE
T ss_pred CCCceEE
Confidence 6433343
No 228
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*
Probab=93.80 E-value=0.58 Score=43.99 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=68.9
Q ss_pred ceeecCCceEEEeccCcccccccc---c--cccceeeeeeeCCCcccccccc----CCCeEEEEEeeEEEEEEEecCC--
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR---G--LEKYRLGILIANPQTFVTPTHL----DADAVFFVSWGQGTITVIRENN-- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~---G--i~~~rl~~~~l~Pggl~~Ph~~----~A~ei~yV~~G~g~ig~V~~~~-- 219 (540)
.++..+-|.+..+ |... .+. | ....+..+..-.+|.++--|++ ....+++|++|+...-+|+-..
T Consensus 18 ~~~~D~RG~f~e~--~~~~--~~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~S 93 (183)
T 1dzr_A 18 KVFGDERGFFFES--YNQQ--TFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKES 93 (183)
T ss_dssp CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTC
T ss_pred CeEecCCcCEEEE--eehh--hHHhccCCCCCEEEEEEEeCCCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCC
Confidence 3556667777764 4432 111 1 1233444445568988888876 3589999999999888887542
Q ss_pred -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
...+.|.+ +..++||+|+.|-+.|.+++ ..++...+...+|
T Consensus 94 pTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~Y~p 141 (183)
T 1dzr_A 94 PTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY--AEFLYKATNYYSP 141 (183)
T ss_dssp TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSCCCT
T ss_pred CCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC--eEEEEEcCCccCH
Confidence 24566654 68999999999999999743 4444343333334
No 229
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=93.79 E-value=0.37 Score=51.92 Aligned_cols=95 Identities=9% Similarity=0.128 Sum_probs=56.4
Q ss_pred EEEEEcCCCcc--cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC--ccccCCccceEEeeeeCCCcEEEE
Q 040805 377 SYANISKGAMA--APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS--TREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 377 ~~~~L~pggm~--~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
+.+-+.|+|-. .|||.+ -+-+++-+.|+=++.|..|..... --.. .... ...+... ..+...|++|||++|
T Consensus 166 ~N~Y~tp~Gs~g~~pH~D~-~DvFllQv~G~KrWrL~~P~~~~~-~lp~-~~~~~~~~~~~~~--p~~e~~L~pGDvLYi 240 (489)
T 4diq_A 166 SNVYLTPPNSQGFAPHYDD-IEAFVLQLEGRKLWRVYRPRAPTE-ELAL-TSSPNFSQDDLGE--PVLQTVLEPGDLLYF 240 (489)
T ss_dssp EEEEEECSSBCCSCCBCCS-SEEEEEEEEECEEEEEECCSSGGG-TTCS-SCCCCCCGGGCCC--CSEEEEECTTCEEEE
T ss_pred ceEEecCCCcccccCccCC-cceEEEEEeeEEEEEEeCCCCccc-cCCC-cccccCCcccccC--cceEEEECCCCEEEE
Confidence 34677788764 599954 345667777888999988754210 0000 0000 0001111 235568999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEEec
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
|+|++|+..+.++..-.=+.|.+.
T Consensus 241 P~g~~H~~~s~~~~~SlhlTi~~~ 264 (489)
T 4diq_A 241 PRGFIHQAECQDGVHSLHLTLSTY 264 (489)
T ss_dssp CTTCEEEEEBCSSCCEEEEEEEEC
T ss_pred CCCCceEEEecCCCceEEEeeccc
Confidence 999999999875432222444443
No 230
>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*
Probab=93.65 E-value=0.56 Score=44.18 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=69.6
Q ss_pred ceeecCCceEEEeccCcccccccc--cc--ccceeeeeeeCCCcccccccc---CCCeEEEEEeeEEEEEEEecCC----
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR--GL--EKYRLGILIANPQTFVTPTHL---DADAVFFVSWGQGTITVIRENN---- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi--~~~rl~~~~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~~---- 219 (540)
.++..+-|.+..+ |... .+. |+ ...+..+..-.+|.++--|++ .-..+++|++|++..-+|+-..
T Consensus 20 ~~~~D~RG~f~e~--~~~~--~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpT 95 (185)
T 1ep0_A 20 EVYTDERGYFMET--FNEA--IFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDT 95 (185)
T ss_dssp CEEEETTEEEECC--CCHH--HHHHTTCCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTT
T ss_pred CeEecCCccEEEE--eehh--hHHhcCCCCCEEEEEEEeCcCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCC
Confidence 3556667777654 4432 221 21 234444445568999888877 4689999999999888887542
Q ss_pred ---ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 220 ---RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 220 ---~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
...+.|.+ +..++||+|+.|-+.|.++ ...++...+...+|
T Consensus 96 fg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd--~a~~~y~~s~~Y~p 141 (185)
T 1ep0_A 96 YGEWTGVRLSDENRREFFIPEGFAHGFLALSD--ECIVNYKCTELYHP 141 (185)
T ss_dssp TTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESSCCCG
T ss_pred CCeEEEEEecCCCCCEEEeCCCeEEEEEEcCC--CeEEEEecCCccCh
Confidence 24566644 6899999999999999974 35555444333334
No 231
>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*
Probab=93.52 E-value=0.58 Score=44.07 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=54.0
Q ss_pred cCCCccccccc--CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCCC
Q 040805 382 SKGAMAAPFYN--SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h--~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG~ 456 (540)
.+|.++..||| ..-+++++|++|+...-+|+-.-. |.+| +.....|++ +..++||+|+
T Consensus 56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G~ 118 (185)
T 1ep0_A 56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKN-----------------SDTYGEWTGVRLSDENRREFFIPEGF 118 (185)
T ss_dssp ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTT-----------------CTTTTCEEEEEEETTTCCEEEECTTE
T ss_pred cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCCe
Confidence 48999999999 667899999999998878876431 1111 223445654 6899999999
Q ss_pred eEEEEecCCCCEEEEEE
Q 040805 457 PVVTVASQNNNLEVVCF 473 (540)
Q Consensus 457 ~h~~~n~~~e~l~~v~F 473 (540)
+|-+.+.++. .+++.+
T Consensus 119 aHgf~~lsd~-a~~~y~ 134 (185)
T 1ep0_A 119 AHGFLALSDE-CIVNYK 134 (185)
T ss_dssp EEEEEECSSE-EEEEEE
T ss_pred EEEEEEcCCC-eEEEEe
Confidence 9999987554 555444
No 232
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.46 E-value=0.21 Score=53.99 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=47.7
Q ss_pred eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP 234 (540)
+-|-|.+...|.|.| +.-|..|+.|+=++-++.|+.. ....+++||+++||
T Consensus 270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIP 349 (488)
T 3kv5_D 270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP 349 (488)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEEC
T ss_pred EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeC
Confidence 455666655565543 4568899999999999888411 23588999999999
Q ss_pred CCCeEEEEeCC
Q 040805 235 SGNTFYVTNTD 245 (540)
Q Consensus 235 aG~~h~~~N~g 245 (540)
+|..|+++|.+
T Consensus 350 sGWwH~V~nle 360 (488)
T 3kv5_D 350 TGWIHAVLTSQ 360 (488)
T ss_dssp TTCEEEEEEEE
T ss_pred CCceEEeeCCC
Confidence 99999999985
No 233
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Probab=93.45 E-value=0.44 Score=45.36 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=54.5
Q ss_pred cCCCcccccccCCCcEEEEEEe-ceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCCCcEEEECCCCeEE
Q 040805 382 SKGAMAAPFYNSRSTKVAVVVA-GDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRTDSAYIVPAGHPVV 459 (540)
Q Consensus 382 ~pggm~~PH~h~~A~ei~yV~~-G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~GDV~vVPaG~~h~ 459 (540)
.+|.++..|+|+ -+++++|++ |+...-+|+-. .+ .+| +.....|+.+..++||+|+.|-
T Consensus 68 ~~GvlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR-~S-----------------pTfg~~~~v~Ls~~~~L~IP~G~aHg 128 (197)
T 1nxm_A 68 RKNVLRGLHAEP-WDKYISVADGGKVLGTWVDLR-EG-----------------ETFGNTYQTVIDASKSIFVPRGVANG 128 (197)
T ss_dssp ETTBEEEEEECS-SCEEEEECSSCCEEEEEEECB-SS-----------------TTTTCEEEEEECTTEEEEECTTEEEE
T ss_pred CCCCcceeeecc-cceEEEEcCCCEEEEEEEECC-CC-----------------CCCCeEEEEEeCCCcEEEeCCCeEEE
Confidence 689999999994 569999999 99888888875 21 111 2344578889999999999999
Q ss_pred EEecCCCCEEEEEE
Q 040805 460 TVASQNNNLEVVCF 473 (540)
Q Consensus 460 ~~n~~~e~l~~v~F 473 (540)
+.+.++ +.+++.+
T Consensus 129 f~~lsd-~a~~~y~ 141 (197)
T 1nxm_A 129 FQVLSD-FVAYSYL 141 (197)
T ss_dssp EEECSS-EEEEEEE
T ss_pred EEeccC-CeEEEEE
Confidence 888754 4555544
No 234
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=93.41 E-value=0.28 Score=52.45 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=49.1
Q ss_pred eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP 234 (540)
+-|-|.+...|.|.| +.-|..|+.|+=++-++.|... ....+.+||+++||
T Consensus 200 ~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIP 279 (451)
T 2yu1_A 200 CLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIP 279 (451)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEEC
T ss_pred EEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeC
Confidence 456666666777754 4568899999999999887621 23578999999999
Q ss_pred CCCeEEEEeCC
Q 040805 235 SGNTFYVTNTD 245 (540)
Q Consensus 235 aG~~h~~~N~g 245 (540)
+|..|++.|..
T Consensus 280 sGWwH~V~nle 290 (451)
T 2yu1_A 280 SGWIHAVYTPT 290 (451)
T ss_dssp TTCEEEEECSS
T ss_pred CCceEEEecCC
Confidence 99999999986
No 235
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=93.39 E-value=0.19 Score=52.40 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=47.5
Q ss_pred eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP 234 (540)
+-+-|.+...|.|.| +.-|..|+.|+=++-++.|+.. ....+++||+++||
T Consensus 151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP 230 (371)
T 3k3o_A 151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP 230 (371)
T ss_dssp EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence 455666665666643 4557899999999988876521 23588999999999
Q ss_pred CCCeEEEEeCC
Q 040805 235 SGNTFYVTNTD 245 (540)
Q Consensus 235 aG~~h~~~N~g 245 (540)
+|..|+++|..
T Consensus 231 sGWwH~V~nle 241 (371)
T 3k3o_A 231 TGWIHAVLTPV 241 (371)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEecCC
Confidence 99999999975
No 236
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=93.32 E-value=0.19 Score=52.63 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=47.8
Q ss_pred eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP 234 (540)
+-+-|.+...+.|.| +.-|..|+.|+=+.-++.|+.. ....+++||+++||
T Consensus 178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIP 257 (392)
T 3pua_A 178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIP 257 (392)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeC
Confidence 455666555666644 5678899999999988877521 23578999999999
Q ss_pred CCCeEEEEeCC
Q 040805 235 SGNTFYVTNTD 245 (540)
Q Consensus 235 aG~~h~~~N~g 245 (540)
+|..|+++|..
T Consensus 258 sGWwH~V~nle 268 (392)
T 3pua_A 258 SGWIYATLTPV 268 (392)
T ss_dssp TTCEEEEEEEE
T ss_pred CCceEEEecCC
Confidence 99999999985
No 237
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=93.24 E-value=0.026 Score=38.24 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhcccc
Q 040805 93 EKHLRQCQRECDRQEEGG 110 (540)
Q Consensus 93 ~~~~~~c~~~c~~~~~~~ 110 (540)
+++.+.|+++|++..++|
T Consensus 19 PWr~QECm~qCrrRrggg 36 (37)
T 2l2r_A 19 PWRVQECVSQCRRRRGGG 36 (37)
T ss_dssp GGGHHHHHHHHHSCTTTC
T ss_pred ccHHHHHHHHHHHhhcCC
Confidence 899999999999988764
No 238
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*
Probab=93.23 E-value=0.57 Score=44.09 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=53.6
Q ss_pred cCCCccccccc--CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCCC
Q 040805 382 SKGAMAAPFYN--SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h--~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG~ 456 (540)
.+|.++..||| ..-+++++|++|+...-+|+-... +.+| +.....|++ +..++||+|+
T Consensus 57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G~ 119 (184)
T 2ixk_A 57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRG-----------------SPTFGQWVGERLSAENKRQMWIPAGF 119 (184)
T ss_dssp ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTT-----------------STTTTCEEEEEEETTTCCEEEECTTE
T ss_pred CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEeCCCcCCEEEeCCCe
Confidence 48999999999 667899999999988777776321 1112 123345654 6899999999
Q ss_pred eEEEEecCCCCEEEEEE
Q 040805 457 PVVTVASQNNNLEVVCF 473 (540)
Q Consensus 457 ~h~~~n~~~e~l~~v~F 473 (540)
+|-+.+.++. .+++.+
T Consensus 120 aHgf~~lsd~-a~~~y~ 135 (184)
T 2ixk_A 120 AHGFVVLSEY-AEFLYK 135 (184)
T ss_dssp EEEEEECSSE-EEEEEE
T ss_pred EEEEEEcCCC-EEEEEe
Confidence 9999987554 555544
No 239
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}
Probab=93.06 E-value=0.62 Score=44.59 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG 455 (540)
.+|.++..|||.. -.++++|++|+...-+|+-... +.+| +.+...|++ +..++||+|
T Consensus 78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G 140 (205)
T 3ryk_A 78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKD-----------------SPTFKQWRGYILSADNHRQLLVPKG 140 (205)
T ss_dssp STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTT-----------------STTTTCEEEEEEETTTCCEEEECTT
T ss_pred CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence 5899999999953 5789999999998888886431 1122 233446764 789999999
Q ss_pred CeEEEEecCCCCEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F 473 (540)
++|-+.+.++ +..++..
T Consensus 141 ~aHGF~~Lsd-~a~~~Y~ 157 (205)
T 3ryk_A 141 FAHGFCTLVP-HTIVMYK 157 (205)
T ss_dssp EEEEEEECSS-SEEEEEE
T ss_pred ceEEEEEcCC-CEEEEEE
Confidence 9999988754 4444433
No 240
>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A
Probab=93.03 E-value=8 Score=38.63 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=33.7
Q ss_pred ccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 194 PTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 194 Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
.......|+ ++.+.|.+.|.+ ...+|.|..-|.++||.|....+..
T Consensus 73 ~yfl~~rE~~iV~l~G~~~V~v----dG~~f~lg~~dalYVp~g~~~v~~a 119 (282)
T 1xru_A 73 SYFLERRELGVINIGGAGTITV----DGQCYEIGHRDALYVGKGAKEVVFA 119 (282)
T ss_dssp SSTTTTEEEEEEECSSCEEEEE----TTEEEEECTTCEEEECTTCCCEEEE
T ss_pred ccccCCcEEEEEEccCeEEEEE----CCEEEecCCCCEEEeCCCCeEEEEE
Confidence 344555555 566788998887 4567899999999999998644444
No 241
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*
Probab=92.91 E-value=0.78 Score=43.07 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=53.1
Q ss_pred cCCCcccccccC---CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNS---RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~---~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--GDV~vVPaG 455 (540)
.+|.++..|||. .-+++++|++|+...-+|+-... |.+|. .....|++ +..++||+|
T Consensus 55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G 117 (183)
T 1dzr_A 55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKE-----------------SPTFGQWVGVNLSAENKRQLWIPEG 117 (183)
T ss_dssp ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence 489999999995 56799999999998777776421 11121 23445654 689999999
Q ss_pred CeEEEEecCCCCEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F 473 (540)
++|-+.+.++. .+++.+
T Consensus 118 ~aHgf~~lsd~-a~~~y~ 134 (183)
T 1dzr_A 118 FAHGFVTLSEY-AEFLYK 134 (183)
T ss_dssp EEEEEEECSSE-EEEEEE
T ss_pred eEEEEEEcCCC-eEEEEE
Confidence 99999887554 444443
No 242
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A
Probab=92.90 E-value=1 Score=42.94 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=54.0
Q ss_pred cCCCcccccccC---CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNS---RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~---~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--GDV~vVPaG 455 (540)
.+|.++..|||. .-+++++|++|+..--+|+-.-. |.+|. -+...|++ +..++||+|
T Consensus 52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~-----------------SpTfG~w~~v~Ls~en~~~l~IP~G 114 (201)
T 4hn1_A 52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIG-----------------SPTFGRWEIVPMDAERNTAVYLTAG 114 (201)
T ss_dssp CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCc
Confidence 689999999985 46899999999998888887431 12222 23345654 789999999
Q ss_pred CeEEEEecCCCCEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F 473 (540)
++|-+.+.++ +..++..
T Consensus 115 faHGF~~Lsd-~a~~~Y~ 131 (201)
T 4hn1_A 115 LGRAFLSLTD-DATLVFL 131 (201)
T ss_dssp CEEEEEECST-TEEEEEE
T ss_pred ceEEEeecCC-CeEEEEe
Confidence 9999888754 4554443
No 243
>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A
Probab=92.89 E-value=0.68 Score=44.03 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=53.8
Q ss_pred cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG 455 (540)
.+|.++..|||.. -.++++|++|+...-+|+-... +.+| +.+...|.. +..++||+|
T Consensus 73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~en~~~L~IP~G 135 (196)
T 1wlt_A 73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKS-----------------SPTFGKYVKAELNEENHYMLWIPPG 135 (196)
T ss_dssp CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTT-----------------STTTTCEEEEEEETTTCCEEEECTT
T ss_pred CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence 5899999999965 5799999999998777876421 1112 234456764 789999999
Q ss_pred CeEEEEecCCCCEEEEEE
Q 040805 456 HPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F 473 (540)
++|-+.+.++ +.+++.+
T Consensus 136 ~aHgf~~lsd-~a~~ly~ 152 (196)
T 1wlt_A 136 FAHGFQALED-SIVIYFI 152 (196)
T ss_dssp EEEEEEESSS-EEEEEEE
T ss_pred eEEEEEEcCC-CeEEEEE
Confidence 9999998755 4444444
No 244
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=92.89 E-value=0.37 Score=49.48 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=46.0
Q ss_pred eeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc----------------------------------------e
Q 040805 185 IANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR----------------------------------------E 221 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~----------------------------------------~ 221 (540)
-+-|.+...|.|.| .+-|..++.|+=++.++.|... .
T Consensus 177 ~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~ 256 (336)
T 3k2o_A 177 VMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPL 256 (336)
T ss_dssp EEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCE
T ss_pred EECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCceE
Confidence 45555544455544 3469999999999998876421 1
Q ss_pred EEeeCCCcEEEECCCCeEEEEeCC
Q 040805 222 SYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 222 ~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
...+++||+++||+|..|++.|.+
T Consensus 257 ~~~l~pGd~l~iP~gw~H~v~~~~ 280 (336)
T 3k2o_A 257 EILQKPGETVFVPGGWWHVVLNLD 280 (336)
T ss_dssp EEEECTTCEEEECTTCEEEEEESS
T ss_pred EEEECCCCEEEeCCCCcEEEecCC
Confidence 357899999999999999999986
No 245
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=92.85 E-value=0.32 Score=51.14 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=48.3
Q ss_pred eeeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~i 233 (540)
++-|-|.+...|.|.| +.-|..++.|+=++-++.|+.. ....+++||+++|
T Consensus 178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfI 257 (397)
T 3kv9_A 178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV 257 (397)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEe
Confidence 3456666665665543 5568899999999998887521 2347899999999
Q ss_pred CCCCeEEEEeCC
Q 040805 234 PSGNTFYVTNTD 245 (540)
Q Consensus 234 PaG~~h~~~N~g 245 (540)
|+|..|++.|..
T Consensus 258 PsGW~H~V~nle 269 (397)
T 3kv9_A 258 PTGWIHAVLTSQ 269 (397)
T ss_dssp CTTCEEEEEEEE
T ss_pred CCCCeEEccCCc
Confidence 999999999985
No 246
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A
Probab=92.69 E-value=1 Score=43.04 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=53.2
Q ss_pred cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG 455 (540)
.+|-++..|||.. -+++++|++|+...-+|+-... |.+| +.+...|+. +..++||.|
T Consensus 55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~~n~~~L~IP~G 117 (205)
T 1oi6_A 55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVG-----------------SPTFGQWDSVLMDQQDPRAVYLPVG 117 (205)
T ss_dssp CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBT-----------------CTTTTCEEEEEECSSSCCEEEECTT
T ss_pred CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence 5899999999965 5799999999998878876421 1112 234456765 589999999
Q ss_pred CeEEEEecCCCCEEEEE
Q 040805 456 HPVVTVASQNNNLEVVC 472 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~ 472 (540)
++|-+.+.++. .+++.
T Consensus 118 ~aHgf~~lsd~-a~~~y 133 (205)
T 1oi6_A 118 VGHAFVALEDD-TVMSY 133 (205)
T ss_dssp CEEEEEECSTT-EEEEE
T ss_pred eeEEEEEccCC-eEEEE
Confidence 99999987554 44443
No 247
>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*
Probab=92.19 E-value=2.3 Score=39.50 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=63.5
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEE-EEEEEecCCce-EE----eeCCCc---EEEECCCCeEEEEeCCCCccEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQG-TITVIRENNRE-SY----NVKRGD---IIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g-~ig~V~~~~~~-~~----~l~~GD---v~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
++-|.++....-|-.+++|+.|...|.. ++-++.+++.. +. +|.+|+ .++||+|+-+.-.- + ...+|
T Consensus 57 YfLL~~~~~S~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d~~~Ge~~pQ~vVP~G~WqaA~~-~---~~~LV 132 (172)
T 3loi_A 57 YYLMQAGQPDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEV-D---GYCLA 132 (172)
T ss_dssp EEEEETTCCEEEEECSSEEEEEEEEESCEEEEEECTTSCEEEEEESCTTTSTTCBSEEEECTTCEEEEEE-S---SEEEE
T ss_pred EEEEcCCCCccCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCCcccCCcceEEEECCCEEEEEEe-C---CcEEE
Confidence 3456777743333358999999999975 78888888653 33 567888 78999999766655 3 23333
Q ss_pred E-EeecCCCCC-cccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805 254 K-FIKSINLPG-QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV 302 (540)
Q Consensus 254 ~-i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l 302 (540)
. ... || .|..|-|+ +++-|.+.|---.+.|++|
T Consensus 133 sctVa----PGF~f~dfel~------------~~~~L~~~~P~~~~~I~~l 167 (172)
T 3loi_A 133 SVLVA----PGFDFKDFSLG------------KREELIKEYPQHRDVIMRC 167 (172)
T ss_dssp EEEEE----SCCCGGGCEEC------------CHHHHHHHCGGGHHHHHHT
T ss_pred EEEEc----CCccchhcEEc------------CHHHHHHHCchHHHHHHHh
Confidence 3 332 44 35555553 4566666665555555554
No 248
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=92.07 E-value=0.54 Score=48.27 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCC----Cccccccc-CCC----------ccccC--CccceEEeeee
Q 040805 383 KGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSR----SSSERRHQ-GSS----------TREEG--SATYHKVSSRI 444 (540)
Q Consensus 383 pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~----~~~~~~~~-~~~----------~~~~~--~~~~~~~~~~l 444 (540)
+|+....|+.+..+ -|..++.|+=++.++.|.... ......+. ..+ .-+.. ....+.+...|
T Consensus 181 ~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~~l 260 (336)
T 3k2o_A 181 PRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQ 260 (336)
T ss_dssp TTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCEEEEE
T ss_pred CCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCceEEEEE
Confidence 45667889988765 699999999999999987531 00000000 000 00000 00123455679
Q ss_pred CCCcEEEECCCCeEEEEecC
Q 040805 445 RTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 445 ~~GDV~vVPaG~~h~~~n~~ 464 (540)
.+||+++||+|+.|+..|..
T Consensus 261 ~pGd~l~iP~gw~H~v~~~~ 280 (336)
T 3k2o_A 261 KPGETVFVPGGWWHVVLNLD 280 (336)
T ss_dssp CTTCEEEECTTCEEEEEESS
T ss_pred CCCCEEEeCCCCcEEEecCC
Confidence 99999999999999999885
No 249
>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*
Probab=91.74 E-value=1.6 Score=42.40 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=52.6
Q ss_pred cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG 455 (540)
.+|-++..|||.. -+++++|++|+...-+|+-... +.+| +.+...|+. +..++||+|
T Consensus 74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~~n~~~L~IP~G 136 (225)
T 1upi_A 74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREG-----------------SPTFGRWDSVLLDDQDRRTIYVSEG 136 (225)
T ss_dssp CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCC-----------------CCCCCcEEEEEecCCCCcEEEeCCC
Confidence 5899999999965 4799999999998777776321 1112 233446655 589999999
Q ss_pred CeEEEEecCCCCEEEEE
Q 040805 456 HPVVTVASQNNNLEVVC 472 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~ 472 (540)
++|-+.+.++. .+++.
T Consensus 137 ~aHgF~~Lsd~-a~vly 152 (225)
T 1upi_A 137 LAHGFLALQDN-STVMY 152 (225)
T ss_dssp CEEEEEECSSS-EEEEE
T ss_pred eeEEEEEcCCC-EEEEE
Confidence 99999987554 44443
No 250
>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1
Probab=91.55 E-value=1.2 Score=42.85 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=52.6
Q ss_pred cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805 382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG 455 (540)
Q Consensus 382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG 455 (540)
.+|-++..|||.. -+++++|++|+...-+|+-... +.+| +.+...|+. +..++||.|
T Consensus 63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~~n~~~L~IP~G 125 (216)
T 2c0z_A 63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVG-----------------SPTYGCWEGTRLDDVSRRAVYLSEG 125 (216)
T ss_dssp ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence 4899999999965 5799999999988777776421 1111 233446655 579999999
Q ss_pred CeEEEEecCCCCEEEEE
Q 040805 456 HPVVTVASQNNNLEVVC 472 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~ 472 (540)
++|-+.+.++. .+++.
T Consensus 126 ~aHgF~~Lsd~-a~~ly 141 (216)
T 2c0z_A 126 IGHGFCAISDE-ATLCY 141 (216)
T ss_dssp EEEEEEECSSE-EEEEE
T ss_pred eeEEEEEcCCC-eEEEE
Confidence 99999987554 44443
No 251
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A
Probab=91.44 E-value=1.6 Score=41.54 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=68.8
Q ss_pred ceeecCCceEEEeccCcccccccc---cc--ccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805 151 SRVTSQHGRVAFLPKFTQRSKLLR---GL--EKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN-- 219 (540)
Q Consensus 151 ~~~~~e~G~i~~l~~f~~~~~~L~---Gi--~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~-- 219 (540)
.++..+-|.+..+ |... .|. |+ ......+..-.+|.++-.|++. ...+++|++|+..--+|+-..
T Consensus 15 ~~f~D~RG~F~e~--~~~~--~f~~~~G~~~~fvQ~n~S~S~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~S 90 (201)
T 4hn1_A 15 VIHSDHRGRSHEW--FRGE--SFRQAFGHDFPVAQVNVAVSHRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGS 90 (201)
T ss_dssp CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEECTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTC
T ss_pred ceEeeCCcCEEEe--eeHH--HHHHhhCCCCCeeEEEEEEcCCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCC
Confidence 4566777777554 4432 222 22 2233333344789999888863 689999999999888887431
Q ss_pred -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
-....|.+ +-.++||+|+.|-+.+..++ ..++...+...+|
T Consensus 91 pTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~--a~~~Y~~t~~Y~p 138 (201)
T 4hn1_A 91 PTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD--ATLVFLCSSGYAP 138 (201)
T ss_dssp TTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT--EEEEEEESSCCCG
T ss_pred CCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC--eEEEEeCCCCcCh
Confidence 13556654 88999999999999998743 4444334333344
No 252
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=91.30 E-value=0.45 Score=51.52 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=46.6
Q ss_pred eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP 234 (540)
+.+-|.+...+.|.| +.-|.+|+.|+=+.-++.|+.. ....+++||+++||
T Consensus 300 ~lmg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIP 379 (528)
T 3pur_A 300 CLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIP 379 (528)
T ss_dssp EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEEC
T ss_pred EEEeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEec
Confidence 345555555555543 5578899999998888777521 12478999999999
Q ss_pred CCCeEEEEeCC
Q 040805 235 SGNTFYVTNTD 245 (540)
Q Consensus 235 aG~~h~~~N~g 245 (540)
+|..|+++|..
T Consensus 380 sGW~HaV~tle 390 (528)
T 3pur_A 380 AGWIHAVLTPV 390 (528)
T ss_dssp TTCEEEEEEEE
T ss_pred CCceEEEecCC
Confidence 99999999985
No 253
>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A
Probab=90.87 E-value=0.25 Score=49.75 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=44.4
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEE--EecC------CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITV--IREN------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~--V~~~------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v 253 (540)
.+.||+...||. |.-++.+...|..++-+ +++. +...+.+++|.+|++=...+|+..|.|+...+.++
T Consensus 97 rL~PG~~I~~Hr-D~~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RIhLv 172 (290)
T 1e5r_A 97 RNLKNAIVIPHR-DFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLC 172 (290)
T ss_dssp EEEESEEEEEEC-CC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCCEEE
T ss_pred EeCCCCEeeCcc-CccccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeEEEE
Confidence 899999988884 32233334455544433 3322 23568999999999999999999999866566554
No 254
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=90.67 E-value=0.84 Score=48.74 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=52.6
Q ss_pred cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCCc---ccccccCCCcccc-CCccceEEeeeeCCCcEEEECCCC
Q 040805 382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTREE-GSATYHKVSSRIRTDSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~vVPaG~ 456 (540)
.+|+....|+.+.++ .|..|+.|+=++-++.|....-. .+.... .+.... ....-+.+...+.+||+++||.|+
T Consensus 204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~-~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGW 282 (451)
T 2yu1_A 204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSG-SQGDIFLGDRVSDCQRIELKQGYTFVIPSGW 282 (451)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTT-CCSSSCHHHHSSCCEEEEECTTCEEEECTTC
T ss_pred cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccc-cchhhhhccccccceEEEECCCcEEEeCCCc
Confidence 356666778887754 58899999999999999642100 000000 000000 000002344578999999999999
Q ss_pred eEEEEecCCCCEEE
Q 040805 457 PVVTVASQNNNLEV 470 (540)
Q Consensus 457 ~h~~~n~~~e~l~~ 470 (540)
.|+..|.. ..+.|
T Consensus 283 wH~V~nle-dsIai 295 (451)
T 2yu1_A 283 IHAVYTPT-DTLVF 295 (451)
T ss_dssp EEEEECSS-CEEEE
T ss_pred eEEEecCC-CeEEE
Confidence 99999873 33444
No 255
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=90.36 E-value=0.65 Score=50.11 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=50.8
Q ss_pred cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCCc---ccccccCCCcccc-CCccceEEeeeeCCCcEEEECCCC
Q 040805 382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTREE-GSATYHKVSSRIRTDSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~vVPaG~ 456 (540)
.+|+....|+.+..+ .|..|+.|+=++-++.|....-. .+.... .+.+.. .....+-+...|++||+++||+|+
T Consensus 274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGW 352 (488)
T 3kv5_D 274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSV-TQSEVFFGDKVDKCYKCVVKQGHTLFVPTGW 352 (488)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCS-SGGGSCGGGSSSCCEEEEEETTCEEEECTTC
T ss_pred CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCC-ccchhhhcccccceEEEeeCCCCEEEeCCCc
Confidence 467778889988776 47789999999999988421000 000000 000000 000012344579999999999999
Q ss_pred eEEEEec
Q 040805 457 PVVTVAS 463 (540)
Q Consensus 457 ~h~~~n~ 463 (540)
.|+..|.
T Consensus 353 wH~V~nl 359 (488)
T 3kv5_D 353 IHAVLTS 359 (488)
T ss_dssp EEEEEEE
T ss_pred eEEeeCC
Confidence 9999987
No 256
>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}
Probab=90.26 E-value=5.6 Score=38.41 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=64.6
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEE-EEEEEecCC----------------------------c-eEE----eeCCC
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQG-TITVIRENN----------------------------R-ESY----NVKRG 228 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g-~ig~V~~~~----------------------------~-~~~----~l~~G 228 (540)
++-|.+|....-|-.+++|+.+...|.. ++-++.+++ . +++ +|.+|
T Consensus 64 YfLL~~g~~S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~G 143 (225)
T 3m3i_A 64 YFLCTPESPSHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQPPAAPQAETDTADARPKYQVYRRVLVGARVERG 143 (225)
T ss_dssp EEEECSSSCEEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC------------------CCSSCEEEEEEESSCGGGT
T ss_pred EEEecCCCCcccEEecCCEEEEEECCCCEEEEEEcCCCcccccccccccccccccccccccccccCceEEEEeCCCccCC
Confidence 4467888753222247999999999985 677888765 1 233 44667
Q ss_pred c--EEEECCCCeEEEEeCCCC----ccEEEE-EEeecCCCCC-cccccccCCCCCcccccccCCHHHHHHhcCCCHHHHH
Q 040805 229 D--IIRVPSGNTFYVTNTDDD----EKLYIV-KFIKSINLPG-QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE 300 (540)
Q Consensus 229 D--v~~iPaG~~h~~~N~g~~----e~l~~v-~i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~ 300 (540)
+ .++||+|+-+.-.-.+++ ....+| |... || .|..|-|+ +.+-|.+.|.--.+.|+
T Consensus 144 e~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVa----PGFdF~DFel~------------~~~~L~~~~P~~~~~I~ 207 (225)
T 3m3i_A 144 ELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVS----PGFDYRDFEIF------------TQAQLMELYPQHEAVIK 207 (225)
T ss_dssp CBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEE----SCCCGGGCEEC------------BHHHHHHHCGGGHHHHH
T ss_pred ceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEc----CCccchhcEec------------CHHHHHHHCchHHHHHH
Confidence 6 579999997777655432 123333 3332 44 35555553 46666666655556666
Q ss_pred HHh
Q 040805 301 RVL 303 (540)
Q Consensus 301 ~l~ 303 (540)
+|-
T Consensus 208 ~lt 210 (225)
T 3m3i_A 208 QMA 210 (225)
T ss_dssp HHS
T ss_pred Hhc
Confidence 664
No 257
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=89.88 E-value=1.1 Score=47.72 Aligned_cols=64 Identities=17% Similarity=0.313 Sum_probs=43.4
Q ss_pred cceeeeeeeC--CCc-cccccccCCCeEEEEEeeEEEEEEEecCCceE-EeeCCCcEEEECCCCeEEEEeC
Q 040805 178 KYRLGILIAN--PQT-FVTPTHLDADAVFFVSWGQGTITVIRENNRES-YNVKRGDIIRVPSGNTFYVTNT 244 (540)
Q Consensus 178 ~~rl~~~~l~--Pgg-l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~-~~l~~GDv~~iPaG~~h~~~N~ 244 (540)
.+.+..+++. +++ ..++ -.+...|+.|++|+|+++. .+.... ..|++||+++||++...-+.+.
T Consensus 356 eF~v~~~~~~~~~~~~~~~~-~~~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~ 423 (440)
T 1pmi_A 356 EFSVLQTIFDKSKGGKQVIE-GLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTAD 423 (440)
T ss_dssp SCEEEEEECCTTTCCEEEEC-CCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred eEEEEEEEecCCCCceeEEe-cCCCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence 3455555777 442 2222 2357789999999998875 222122 6899999999999976667765
No 258
>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}
Probab=89.44 E-value=1.5 Score=41.71 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=52.0
Q ss_pred eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC-------CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEE
Q 040805 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYI 252 (540)
Q Consensus 180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~ 252 (540)
.+.+..|.||+...||.-...-.+ +..++++.|. +.++...+.|.++++-.-..|+..|.++. -++
T Consensus 103 ~a~fs~L~pG~~I~pH~g~~n~~l-----R~HL~L~~p~~~~~i~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~--~Rv 175 (197)
T 3rcq_A 103 QIKYSIMHPGTHVWPHTGPTNCRL-----RMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASS--FRL 175 (197)
T ss_dssp EEEEEEECTTEEEEEECCSCTTEE-----EEEEEEECCSSSEEEEETTEEECCCBTCEEEECTTSCEEEEECSSS--CEE
T ss_pred eEEEEEeCCCCCcCCeeCCCCCeE-----EEEEEEEeCCCCcEEEECCEEEEeeCCcEEEEcCCeEEEEEECCCC--CEE
Confidence 467788999999999984322111 3445555554 33567899999999999999999998743 445
Q ss_pred EEEeecCCCC
Q 040805 253 VKFIKSINLP 262 (540)
Q Consensus 253 v~i~~~~~~p 262 (540)
+.++| ...|
T Consensus 176 vL~~D-~~rP 184 (197)
T 3rcq_A 176 IFIVD-VWHP 184 (197)
T ss_dssp EEEEE-EECT
T ss_pred EEEEe-eeCC
Confidence 54553 4444
No 259
>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*
Probab=89.44 E-value=4.2 Score=38.79 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=61.4
Q ss_pred eeeeCCCcc-ccccccCCCeEEEEEeeEEEEEEEecCCce-EE----eeCCCc--EEEECCCCeEEEEeCCCCcc---EE
Q 040805 183 ILIANPQTF-VTPTHLDADAVFFVSWGQGTITVIRENNRE-SY----NVKRGD--IIRVPSGNTFYVTNTDDDEK---LY 251 (540)
Q Consensus 183 ~~~l~Pggl-~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~~----~l~~GD--v~~iPaG~~h~~~N~g~~e~---l~ 251 (540)
++-|.++.. ..-|-.+++||.|...|.+..-++.+++.. +. +|.+|+ -++||+|+-+.-....++.- .-
T Consensus 83 YfLL~~~~~~S~wHRv~sdEiW~~h~G~p~~~li~~dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~~~~~~~tL 162 (203)
T 1xe7_A 83 YYLLTPDSPIGKFHKNINRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEFDNGFL 162 (203)
T ss_dssp EEEEBTTBCEEEEEEESSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCCTTTTTCEE
T ss_pred EEEEcCCCCcccceeeCCCEEEEEEcCCccEEEEcCCCCEEEEEeCCCcccCcccEEEEcCCEEEEeEecCCCCcccceE
Confidence 345777763 333335899999999998877677777553 33 455566 48999998877655421222 22
Q ss_pred EEEEeecCCCCC-cccccccCCCCCcccccccCCHH-HHHHhcCCCHHHHHHH
Q 040805 252 IVKFIKSINLPG-QYEAFYGAGGENPESFLRAFSWE-ILESAFKTKRDSLERV 302 (540)
Q Consensus 252 ~v~i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~e-vLa~Af~v~~~~v~~l 302 (540)
+=|... || .|..|-|+ +.+ -|.+.| +.+.++.|
T Consensus 163 VgCtVa----PGFdF~dFel~------------~~~~~L~~~~--P~~~~~~l 197 (203)
T 1xe7_A 163 ISEVVV----PGFDFEDHTFL------------KGEDELKHLV--GPEKAAEL 197 (203)
T ss_dssp EEEEES----SCCCGGGEEEC------------CHHHHHHHHH--CHHHHHHT
T ss_pred EEEEec----CCccchhcEec------------CCcHHHHHHC--CHHHHHHH
Confidence 333332 55 45666654 344 555555 45666654
No 260
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=89.29 E-value=1.1 Score=47.70 Aligned_cols=82 Identities=9% Similarity=0.097 Sum_probs=51.3
Q ss_pred cCCCcccccccCCCcE-EEEEEeceEEEEEEcCCCCCCc---ccccccCCCccc-cCCccceEEeeeeCCCcEEEECCCC
Q 040805 382 SKGAMAAPFYNSRSTK-VAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTRE-EGSATYHKVSSRIRTDSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h~~A~e-i~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~l~~GDV~vVPaG~ 456 (540)
.+|+....|+.+.++- |..|+.|+=++-++.|....-. .+.... .+.+. -.....+-+...+++||+++||+|+
T Consensus 239 ~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~-~~~~~~~~~~~~~~~~v~l~pGetlfIPsGW 317 (447)
T 3kv4_A 239 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSS-NQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW 317 (447)
T ss_dssp CTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCS-SGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred CCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCc-chhhhhccccccceEEEEECCCcEEecCCCC
Confidence 4566777888887774 7889999999998888531000 000000 00000 0000012344579999999999999
Q ss_pred eEEEEecC
Q 040805 457 PVVTVASQ 464 (540)
Q Consensus 457 ~h~~~n~~ 464 (540)
.|+..|..
T Consensus 318 wH~V~nle 325 (447)
T 3kv4_A 318 IHAVLTPV 325 (447)
T ss_dssp EEEEEESS
T ss_pred eEEEecCC
Confidence 99999983
No 261
>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A
Probab=88.93 E-value=1.2 Score=47.34 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=57.9
Q ss_pred CceEEEecCCCCCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccC
Q 040805 355 FGELFEADSNDFRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEG 433 (540)
Q Consensus 355 ~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~ 433 (540)
.|....+. +.-+.++. |+++.....+. +| -.-.+|.++++++|+-+|++++.-..
T Consensus 140 ~Gl~tl~g-ngD~~~~~-G~aI~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--------------------- 195 (471)
T 1eyb_A 140 SGLHTLCG-AGDIKSNN-GLAIHIFLCNT-SMENRCFYNSDGDFLIVPQKGNLLIYTEF--------------------- 195 (471)
T ss_dssp TTEEEEEE-ESCGGGTC-CEEEEEEEECS-CCCSEEEEESSEEEEEEEEESCEEEEETT---------------------
T ss_pred cchhheec-cCCccccc-ceEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec---------------------
Confidence 45443333 33343432 56665555544 56 56678999999999999999987333
Q ss_pred CccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805 434 SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 434 ~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
-++ .+++||++|||+|..+.+.-.+ +.....
T Consensus 196 ----G~L--~v~pgei~VIPRGi~frv~l~~--p~Rgyi 226 (471)
T 1eyb_A 196 ----GKM--LVQPNEICVIQRGMRFSIDVFE--ETRGYI 226 (471)
T ss_dssp ----EEE--EECTTEEEEECTTCCEEEECSS--SEEEEE
T ss_pred ----ccE--EeccCCEEEECCccEEEEeeCC--CceEEE
Confidence 234 5899999999999999876553 554433
No 262
>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A
Probab=88.71 E-value=1.2 Score=47.48 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=36.4
Q ss_pred cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.|.++++|+.+|++.|.. .--...|++||+++||+|+.+.+.=.+
T Consensus 176 aDGD~Livpq~G~l~i~T----EfG~L~v~pgei~VIPRGi~frv~l~~ 220 (471)
T 1eyb_A 176 SDGDFLIVPQKGNLLIYT----EFGKMLVQPNEICVIQRGMRFSIDVFE 220 (471)
T ss_dssp SSEEEEEEEEESCEEEEE----TTEEEEECTTEEEEECTTCCEEEECSS
T ss_pred CCCCEEEEEEeCCEEEEE----ecccEEeccCCEEEECCccEEEEeeCC
Confidence 368899999999997765 222467999999999999999886554
No 263
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=88.64 E-value=1.1 Score=46.99 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=52.0
Q ss_pred EEEEcC-CCcccccccCCCcE-EEEEEeceEEEEEEcCCCCCC---cccccccCCCcccc-CCccceEEeeeeCCCcEEE
Q 040805 378 YANISK-GAMAAPFYNSRSTK-VAVVVAGDGYIEIACPHVSRS---SSERRHQGSSTREE-GSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 378 ~~~L~p-ggm~~PH~h~~A~e-i~yV~~G~g~v~vv~p~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~v 451 (540)
++-|.| |+....|+.+..+- |..++.|+=++-++.|....- ..+.... .+.+.. .....+-+...+.+||+++
T Consensus 178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~-~~~e~~~~~~~~~~~~v~l~pGe~lf 256 (397)
T 3kv9_A 178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSV-TQSEVFFGDKVDKCYKCVVKQGHTLF 256 (397)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSG-GGGGSCGGGGSSCCEEEEEETTCEEE
T ss_pred EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCC-CcchhhhccccCceEEEEECCCCEEE
Confidence 344554 55666699988774 789999999999998853210 0000000 000000 0000123445799999999
Q ss_pred ECCCCeEEEEec
Q 040805 452 VPAGHPVVTVAS 463 (540)
Q Consensus 452 VPaG~~h~~~n~ 463 (540)
||+|+.|+..|.
T Consensus 257 IPsGW~H~V~nl 268 (397)
T 3kv9_A 257 VPTGWIHAVLTS 268 (397)
T ss_dssp ECTTCEEEEEEE
T ss_pred eCCCCeEEccCC
Confidence 999999999886
No 264
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=88.57 E-value=0.13 Score=33.66 Aligned_cols=31 Identities=35% Similarity=0.734 Sum_probs=20.2
Q ss_pred CCchhHHHHHHHHHhhccCHHHHHHHHHHHHHH
Q 040805 26 KDPELKQCKHQCRARQQYDEKQKEQCARTCEEY 58 (540)
Q Consensus 26 ~dp~~~~c~~~c~~~~~~~~~~~~~c~~~c~~~ 58 (540)
+||| |||--|-.|+-.+.+-.+.|...||+.
T Consensus 2 tdpe--qckvmcyaqrhsspellrrcldnceke 32 (34)
T 2cmy_B 2 TDPE--QCKVMCYAQRHSSPELLRRCLDNCEKE 32 (34)
T ss_dssp -------CHHHHHHBC--CCHHHHHHHHHC---
T ss_pred CChH--HhhHHHHHhhcCCHHHHHHHHHhhhhc
Confidence 5665 899999999999999999999999863
No 265
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=88.48 E-value=0.98 Score=47.36 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=41.1
Q ss_pred cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT 242 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~ 242 (540)
.+.+..+++.++...+ -.+...|+.|++|++++.. + ..+..|++||+++||++..-+..
T Consensus 323 ~F~v~~~~l~~~~~~~--~~~~~~il~v~~G~~~l~~---~-~~~~~l~~G~~~fvpa~~~~~~i 381 (394)
T 2wfp_A 323 DFAFSLHDLALQETSI--GQHSAAILFCVEGEAVLRK---D-EQRLVLKPGESAFIGADESPVNA 381 (394)
T ss_dssp SCEEEEEECCSSCEEE--CCSSCEEEEEEEEEEEEEE---T-TEEEEECTTCEEEECGGGCCEEE
T ss_pred EEEEEEEEEcCCeEEe--cCCCcEEEEEEeceEEEEE---C-CeEEEEccCcEEEEeCCCceEEE
Confidence 3445555777553322 2357799999999998764 2 25689999999999998644433
No 266
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=88.46 E-value=0.61 Score=48.57 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=51.5
Q ss_pred cCCCcccccccCCCcE-EEEEEeceEEEEEEcCCCCCCc---ccccccCCCccc-cCCccceEEeeeeCCCcEEEECCCC
Q 040805 382 SKGAMAAPFYNSRSTK-VAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTRE-EGSATYHKVSSRIRTDSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h~~A~e-i~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~l~~GDV~vVPaG~ 456 (540)
.+|+....|+.+..+- |..|+.|+=++-++.|....-. .+.... .+.+. -.....+-+...+++||+++||+|+
T Consensus 155 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~-~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGW 233 (371)
T 3k3o_A 155 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSS-NQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW 233 (371)
T ss_dssp CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTST-TGGGSCGGGTSSCCEEEEEETTCEEEECTTC
T ss_pred CCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCC-ccchhhcccccCceEEEEECCCcEEEeCCCC
Confidence 5677788899888875 6789999999998888532000 000000 00000 0000012344579999999999999
Q ss_pred eEEEEec
Q 040805 457 PVVTVAS 463 (540)
Q Consensus 457 ~h~~~n~ 463 (540)
.|+..|.
T Consensus 234 wH~V~nl 240 (371)
T 3k3o_A 234 IHAVLTP 240 (371)
T ss_dssp EEEEEEE
T ss_pred eEEEecC
Confidence 9999986
No 267
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=88.44 E-value=1.3 Score=44.07 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=52.1
Q ss_pred ccceeeeeeeCCCccc---cccccCC---C------eEEEE-E---eeEEEEEEEecC--CceEEeeCCCcEEEECCCCe
Q 040805 177 EKYRLGILIANPQTFV---TPTHLDA---D------AVFFV-S---WGQGTITVIREN--NRESYNVKRGDIIRVPSGNT 238 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~---~Ph~~~A---~------ei~yV-~---~G~g~ig~V~~~--~~~~~~l~~GDv~~iPaG~~ 238 (540)
..+-++++ +.|+|.- +||.|+. + |++|. + +|-|.--+-.++ ..+++.|+-||++.||.|.
T Consensus 151 ~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy- 228 (270)
T 2qjv_A 151 DSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY- 228 (270)
T ss_dssp SSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-
T ss_pred ceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-
Confidence 34434444 8899865 8888874 4 88876 3 355543333333 2367999999999999999
Q ss_pred EEEEeCCCCccEEEEEEee
Q 040805 239 FYVTNTDDDEKLYIVKFIK 257 (540)
Q Consensus 239 h~~~N~g~~e~l~~v~i~~ 257 (540)
|-.....+. .+.+|.+.-
T Consensus 229 Hp~~a~pGy-~~YylwvMa 246 (270)
T 2qjv_A 229 HPVATIAGY-DNYYLNVMA 246 (270)
T ss_dssp CCEEECTTC-EEEEEEEEE
T ss_pred CCCcCCCCc-ccEEEEEEE
Confidence 987655323 566777663
No 268
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Probab=87.86 E-value=0.94 Score=44.75 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=59.8
Q ss_pred CCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECC
Q 040805 156 QHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS 235 (540)
Q Consensus 156 e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPa 235 (540)
..|..|.|. +.+. |.+.++| .+.|+=-.+|--+.|+--+||++|+..+| ...+.+|+.+++|+
T Consensus 77 ~~gs~RlLs-~~d~-----GaSTl~V---~fpp~~~~P~Gi~~ad~E~fVL~G~i~~G--------~~~l~~h~Y~f~Pa 139 (303)
T 2qdr_A 77 APGSRRLLT-WHDS-----GASTSRV---VLPPKFEAPSGIFTADLEIFVIKGAIQLG--------EWQLNKHSYSFIPA 139 (303)
T ss_dssp CCEEEEEEE-ECTT-----SCEEEEE---EECTTCEECCBEESSCEEEEEEESEEEET--------TEEECTTEEEEECT
T ss_pred Cccceeecc-cCCC-----CcceEEE---EecCCCCCCCcccccceEEEEEEeEEEeC--------CEEecCCceEEecC
Confidence 468888874 2222 7777888 88888777888888888899999998665 26799999999999
Q ss_pred CC--eEEEEeCCCCccEEEEEE
Q 040805 236 GN--TFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 236 G~--~h~~~N~g~~e~l~~v~i 255 (540)
|+ .-|.. .| +++..+|.+
T Consensus 140 GV~~~~~kv-~~-~~g~~iL~f 159 (303)
T 2qdr_A 140 GVRIGSWKV-LG-GEEAEILWM 159 (303)
T ss_dssp TCCBCCEEE-ET-TSCEEEEEE
T ss_pred CCccCceee-cC-CCCcEEEEE
Confidence 97 33333 24 356777755
No 269
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=87.78 E-value=0.76 Score=48.16 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=51.1
Q ss_pred cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCCc---ccccccCCCcccc-CCccceEEeeeeCCCcEEEECCCC
Q 040805 382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTREE-GSATYHKVSSRIRTDSAYIVPAGH 456 (540)
Q Consensus 382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~vVPaG~ 456 (540)
.+|+....|+.+..+ .|..|+.|+=++-++.|....-. .+.... .+.+.- .....+-+...+++||+++||+|+
T Consensus 182 p~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~-~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGW 260 (392)
T 3pua_A 182 VKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSAS-NHSEMFFADQVDKCYKCIVKQGQTLFIPSGW 260 (392)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHST-TGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred CCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCc-chhhhhhcccccceEEEEECCCcEEeeCCCc
Confidence 567788889988876 48899999999988888532100 000000 000000 000002244579999999999999
Q ss_pred eEEEEec
Q 040805 457 PVVTVAS 463 (540)
Q Consensus 457 ~h~~~n~ 463 (540)
.|+..|.
T Consensus 261 wH~V~nl 267 (392)
T 3pua_A 261 IYATLTP 267 (392)
T ss_dssp EEEEEEE
T ss_pred eEEEecC
Confidence 9999987
No 270
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19
Probab=87.56 E-value=5.2 Score=38.26 Aligned_cols=86 Identities=6% Similarity=0.051 Sum_probs=60.6
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
.+++..+...||--..+|=|. +.-++.|++|....++....... . -...+ . ...|.+|||.++
T Consensus 72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g-------~----~~~~~---~--~~~l~~G~v~~~ 134 (211)
T 3uss_A 72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGG-------R----PHPSG---A--RRRLEPGEVEAL 134 (211)
T ss_dssp SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTS-------C----EEECS---C--CEEECTTCEEEE
T ss_pred CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCC-------C----ccccc---c--eEEecCCCEEEE
Confidence 477888999999999999998 89999999999988875532110 0 00000 0 136999999999
Q ss_pred CCC--CeEEEEec-CCCCEEEEEEEecC
Q 040805 453 PAG--HPVVTVAS-QNNNLEVVCFEINA 477 (540)
Q Consensus 453 PaG--~~h~~~n~-~~e~l~~v~F~~~a 477 (540)
+.+ .+|-+.|. +++. .|++++.+
T Consensus 135 ~p~~g~IH~V~N~~~d~~--avSLHvYg 160 (211)
T 3uss_A 135 SPRIGDVHQVSNAFSDRT--SISIHVYG 160 (211)
T ss_dssp BTTTBCCEEEEESCSSSC--EEEEEEES
T ss_pred CCCCCCEEEEccCCCCCC--EEEEEEcC
Confidence 987 89998875 3443 34444443
No 271
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=87.13 E-value=2.5 Score=35.43 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=49.5
Q ss_pred eeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 184 LIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 184 ~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
-.|.||.. ++ ..++|+.-|++|...+-+ |+...-..+++||.|.||++.-+-+.-. +...++|.+
T Consensus 28 GVm~pGey---tF~T~~~E~M~vvsG~~~V~l--pg~~ew~~~~aGesF~Vpans~F~l~v~---~~~~YlC~y 93 (94)
T 2oyz_A 28 GVMLPGEY---TFGTQAPERMTVVKGALVVKR--VGEADWTTYSSGESFDVEGNSSFELQVK---DATAYLCEY 93 (94)
T ss_dssp EEECSEEE---EEEESSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECSSEEEEEEES---SCEEEEEEC
T ss_pred EEEeceEE---EEcCCCeEEEEEEEeEEEEEc--CCCCcCEEECCCCEEEECCCCEEEEEEc---ccEeEEEEc
Confidence 34556542 12 479999999999997776 7766678899999999999999888774 356677654
No 272
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=86.87 E-value=1.3 Score=45.02 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=39.8
Q ss_pred ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805 179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT 242 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~ 242 (540)
+.+..+.+.++. ... ..+...|+.|++|++++.. +..++.|++||+++||+++.-+..
T Consensus 251 F~~~~~~~~~~~-~~~-~~~~~~il~v~~G~~~l~~----~~~~~~l~~G~~~~vpa~~~~~~i 308 (319)
T 1qwr_A 251 FSVYKWDINGEA-EMA-QDESFLICSVIEGSGLLKY----EDKTCPLKKGDHFILPAQMPDFTI 308 (319)
T ss_dssp CEEEEEEEEEEE-EEC-CCSSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCCEEE
T ss_pred EEEEEEEECCce-EEc-cCCccEEEEEEcCeEEEEE----CCEEEEEcCCcEEEEeCCCceEEE
Confidence 334444665432 221 1367889999999998865 245679999999999998744443
No 273
>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16
Probab=86.80 E-value=6.8 Score=35.71 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=62.8
Q ss_pred cCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeE-EEEEEEecCCc-eEE----eeCC
Q 040805 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQ-GTITVIRENNR-ESY----NVKR 227 (540)
Q Consensus 155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~-g~ig~V~~~~~-~~~----~l~~ 227 (540)
.|+|.++.. |......-| ...-.-++-|.++....-|-. +++||.|...|. .++.++.+++. ++. +|.+
T Consensus 20 PEGG~yrEt--~Rs~~~~~R--~~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~ 95 (154)
T 1znp_A 20 PEGGFYHQT--FRDKAGGER--GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILE 95 (154)
T ss_dssp TTSSEEEEE--EECSSSTTT--CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTT
T ss_pred CCCccEEEE--EeCCCCCCC--cceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCccc
Confidence 478888876 321111111 111222335667765444446 899999999997 66667777654 333 5567
Q ss_pred CcE--EEECCCCeEEEEeCCCCccEEEEEEeecCCCCC-cccccccC
Q 040805 228 GDI--IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG-QYEAFYGA 271 (540)
Q Consensus 228 GDv--~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg-~~~~f~La 271 (540)
|++ ++||+|+-+.-...| ...+|... + .|| .|..|-|+
T Consensus 96 Ge~pQ~vVP~G~WqaA~~~g---~~~LVsCt--V-aPGF~f~dFel~ 136 (154)
T 1znp_A 96 GERPQVIVPANCWQSAESLG---DFTLVGCT--V-SPGFAFSSFVMA 136 (154)
T ss_dssp TEESEEEECTTCEEEEEESS---SEEEEEEE--E-SSCCCGGGEEEC
T ss_pred CcccEEEEcCCEEEEeeECC---CeEEEEEE--e-cCCCcccccEec
Confidence 875 899999988776554 23344332 1 255 46666665
No 274
>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*
Probab=86.57 E-value=17 Score=33.61 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=74.2
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEece-EEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCc---E
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGD-GYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS---A 449 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~-g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD---V 449 (540)
.++.+.-|.+|....-|- -+|+||-+.-.|. ..+-++.|++.. .-.++-.++..|+ .
T Consensus 53 ~TaIYfLL~~~~~S~~HR-v~sdEiW~~~~G~pL~l~~~~~dG~~------------------~~~~LG~d~~~Ge~~pQ 113 (172)
T 3loi_A 53 LTMIYYLMQAGQPDPFHR-VKSDETFVHNLGGSMKIHMIHPDGSY------------------SCSILGNPLEHPEARHQ 113 (172)
T ss_dssp CEEEEEEEETTCCEEEEE-CSSEEEEEEEEESCEEEEEECTTSCE------------------EEEEESCTTTSTTCBSE
T ss_pred ceEEEEEEcCCCCccCEE-ecCCEEEEEEcCCCEEEEEEcCCCce------------------EEEEeCCCcccCCcceE
Confidence 567778889998666565 4789988888886 589999998631 0023334667888 7
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhc
Q 040805 450 YIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFG 516 (540)
Q Consensus 450 ~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~ 516 (540)
+|||+|+...... .+..+|+=-+. |.+.| + -|.-.+++-|...|.--.+.|++|-.
T Consensus 114 ~vVP~G~WqaA~~---~~~~LVsctVa---PGF~f-~----dfel~~~~~L~~~~P~~~~~I~~lt~ 169 (172)
T 3loi_A 114 VVVPRRVWFAQEV---DGYCLASVLVA---PGFDF-K----DFSLGKREELIKEYPQHRDVIMRCTS 169 (172)
T ss_dssp EEECTTCEEEEEE---SSEEEEEEEEE---SCCCG-G----GCEECCHHHHHHHCGGGHHHHHHTSC
T ss_pred EEECCCEEEEEEe---CCcEEEEEEEc---CCccc-h----hcEEcCHHHHHHHCchHHHHHHHhcc
Confidence 8999999776554 34555543233 22221 1 12224677778888777777887754
No 275
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=86.50 E-value=2.2 Score=40.79 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=54.0
Q ss_pred EEEEEcCCCcccccccCCCcE--EEEEEe--ceEEEEEEcCCCCCC-cccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 377 SYANISKGAMAAPFYNSRSTK--VAVVVA--GDGYIEIACPHVSRS-SSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 377 ~~~~L~pggm~~PH~h~~A~e--i~yV~~--G~g~v~vv~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
=.....+|+...+|.|+++.- +.||.- +.|.+.+..|....- .....+. ....... ......-++||+++
T Consensus 106 W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~---~~~~~~~--~~~~i~P~~G~lvl 180 (216)
T 2rg4_A 106 WINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRK---GAREELR--TFRSVAPKVGDVLL 180 (216)
T ss_dssp EEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCC---CSCGGGC--SEEEECCCTTEEEE
T ss_pred EEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccc---cCcccCC--CeeEecCCCCeEEE
Confidence 345667899999999998754 445543 345566666532100 0000000 0000001 11234679999999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEEecC
Q 040805 452 VPAGHPVVTVAS-QNNNLEVVCFEINA 477 (540)
Q Consensus 452 VPaG~~h~~~n~-~~e~l~~v~F~~~a 477 (540)
+|.-++|..... ++++-.-|+|++..
T Consensus 181 FpS~l~H~V~p~~~~~~RiSIsFN~~~ 207 (216)
T 2rg4_A 181 WESWLRHEVPMNMAEEDRISVSFNYAW 207 (216)
T ss_dssp EETTSCEEECCCCSSSCEEEEEEEEEC
T ss_pred ECCCCEEeccCCCCCCCEEEEEEEeec
Confidence 999999987643 34445557886654
No 276
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=84.40 E-value=8.5 Score=33.14 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=50.6
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
+-.|.||.-..-.-..++|+.-|+.|...+-+ |+...-..+.+|+.|.||+..-+-+.-. +...++|.+
T Consensus 41 lGVm~PGe~~YtF~T~~~E~MevvsG~l~V~L--pg~~eW~~~~aGesF~VpanssF~lkv~---~~~~Y~C~y 109 (111)
T 3hqx_A 41 LGVILPTEQPLTFETHVPERMEIISGECRVKI--ADSTESELFRAGQSFYVPGNSLFKIETD---EVLDYVCHL 109 (111)
T ss_dssp EEEECCCSSCEEEECSSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECTTCEEEEECS---SCEEEEEEE
T ss_pred EEEEeccccceEEcCCCcEEEEEEEeEEEEEc--CCcccCEEeCCCCEEEECCCCcEEEEEC---cceeEEEEc
Confidence 33456664101111479999999999997776 7766667899999999999999988774 367777754
No 277
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=84.32 E-value=1.9 Score=46.73 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=49.9
Q ss_pred cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCC---cccccccCCCcccc----CCccceEEeeeeCCCcEEEEC
Q 040805 382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRS---SSERRHQGSSTREE----GSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~l~~GDV~vVP 453 (540)
..|+....|..+.++ .|..|+.|+=++-++.|....- ..+.... ....- -...+ +...+++||+++||
T Consensus 304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~--~~~~wfgd~l~~~~--~~v~l~pGEtlfIP 379 (528)
T 3pur_A 304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSP--DTTTWFGDIANGAV--KRVVIKEGQTLLIP 379 (528)
T ss_dssp CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSS--CCSCCGGGGTTTCC--EEEEEETTCEEEEC
T ss_pred CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCC--chhhhhcccccccE--EEEEECCCCEEEec
Confidence 467777888887776 4889999999998888742100 0000000 00000 00112 23479999999999
Q ss_pred CCCeEEEEec
Q 040805 454 AGHPVVTVAS 463 (540)
Q Consensus 454 aG~~h~~~n~ 463 (540)
+|+.|+.+|.
T Consensus 380 sGW~HaV~tl 389 (528)
T 3pur_A 380 AGWIHAVLTP 389 (528)
T ss_dssp TTCEEEEEEE
T ss_pred CCceEEEecC
Confidence 9999999987
No 278
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=84.60 E-value=0.2 Score=34.12 Aligned_cols=38 Identities=26% Similarity=0.684 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHhhh
Q 040805 90 EPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREK 128 (540)
Q Consensus 90 d~~~~~~~~c~~~c~~~~~~~~q~~~c~~rc~~~~~~~~ 128 (540)
.| ++++..|+.-|.--.|.-.--..|...|++++++++
T Consensus 3 kp-qqeleecqnvcrmkrwstemvhrcekkceekferqq 40 (41)
T 2lqx_A 3 KP-QQELEECQNVCRMKRWSTEMVHRCEKKCEEKFERQQ 40 (41)
Confidence 35 889999999999888876777889999999999875
No 279
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=83.55 E-value=4.9 Score=35.49 Aligned_cols=74 Identities=9% Similarity=-0.068 Sum_probs=50.4
Q ss_pred CCCccccc---c-cCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805 383 KGAMAAPF---Y-NSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV 458 (540)
Q Consensus 383 pggm~~PH---~-h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h 458 (540)
|++++.+| . ++..-..+-|++|+..+-.....+.. .-. +. .-+.+|+..+||++..|
T Consensus 23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~---------------~~~--~~--~l~~~~~~~~i~Pq~wH 83 (127)
T 3bb6_A 23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSA---------------EPD--QV--ILIEAGQFAVFPPEKWH 83 (127)
T ss_dssp CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCS---------------SCS--EE--EEEEBTBEEECCSSCEE
T ss_pred hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCc---------------cee--EE--EEeCCCCceEECCCCcE
Confidence 56778888 4 33333578899999999877765520 000 11 13679999999999999
Q ss_pred EEEecCCCCEEE-EEEEec
Q 040805 459 VTVASQNNNLEV-VCFEIN 476 (540)
Q Consensus 459 ~~~n~~~e~l~~-v~F~~~ 476 (540)
.+..-.+ ++.| |.|...
T Consensus 84 ~Ve~lsd-d~~f~leFyc~ 101 (127)
T 3bb6_A 84 NIEAMTD-DTYFNIDFFVA 101 (127)
T ss_dssp EEEESST-TCEEEEEEEEC
T ss_pred EEEEcCC-CEEEEEEEEeC
Confidence 9987433 6776 777443
No 280
>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A
Probab=83.19 E-value=2.3 Score=42.73 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=53.6
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
+.+.++.|.|||...||-.+ -+..+...|..|+-|.-...+. ....-.. +. ..+++|.++++=
T Consensus 91 l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~-~~f~vdg------------~~--~~m~~GE~w~~d 153 (290)
T 1e5r_A 91 LQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPL-AFHSNED------------TV--IHMRPGEIWFLD 153 (290)
T ss_dssp EEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTT-EEEEETT------------EE--ECCCTTEEEECC
T ss_pred hheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCC-cEEEECC------------EE--EecCCCCEEEEc
Confidence 36787899999999999644 3455455777666555443321 0000000 23 478999999999
Q ss_pred CCCeEEEEecCCCCEEEEEEEe
Q 040805 454 AGHPVVTVASQNNNLEVVCFEI 475 (540)
Q Consensus 454 aG~~h~~~n~~~e~l~~v~F~~ 475 (540)
...+|+..|.++.+-..+++|.
T Consensus 154 ~~~~H~v~N~g~~~RIhLv~D~ 175 (290)
T 1e5r_A 154 AATVHSAVNFSEISRQSLCVDF 175 (290)
T ss_dssp TTSCEEEEESSSSCCCEEEEEE
T ss_pred CCCeeEEEcCCCCCeEEEEEEe
Confidence 9999999998887766666765
No 281
>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}
Probab=82.38 E-value=8.9 Score=36.27 Aligned_cols=79 Identities=8% Similarity=0.090 Sum_probs=57.4
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC-CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH-VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
++.+..|.||+-..||..+....+ +..++++.|. +. .-+-+. +. ...++|.++++=
T Consensus 103 ~a~fs~L~pG~~I~pH~g~~n~~l------R~HL~L~~p~~~~---~i~V~~------------~~--~~w~eGe~~~fD 159 (197)
T 3rcq_A 103 QIKYSIMHPGTHVWPHTGPTNCRL------RMHLGLVIPKEGC---KIRCAN------------ET--KTWEEGKVLIFD 159 (197)
T ss_dssp EEEEEEECTTEEEEEECCSCTTEE------EEEEEEECCSSSE---EEEETT------------EE--ECCCBTCEEEEC
T ss_pred eEEEEEeCCCCCcCCeeCCCCCeE------EEEEEEEeCCCCc---EEEECC------------EE--EEeeCCcEEEEc
Confidence 588899999999999998765444 3455677765 21 000001 12 367899999999
Q ss_pred CCCeEEEEecCCCCEEEEEEEec
Q 040805 454 AGHPVVTVASQNNNLEVVCFEIN 476 (540)
Q Consensus 454 aG~~h~~~n~~~e~l~~v~F~~~ 476 (540)
-.+.|+..|.++++-.++.+++-
T Consensus 160 ds~~Hev~N~~d~~RvvL~~D~~ 182 (197)
T 3rcq_A 160 DSFEHEVWQDASSFRLIFIVDVW 182 (197)
T ss_dssp TTSCEEEEECSSSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEeee
Confidence 99999999988888777777665
No 282
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=82.11 E-value=6.5 Score=38.31 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=54.5
Q ss_pred cceeeeeeeCCCcccccccc-CCCeEEEEEee-EEEEEEEecC----------------CceE------EeeCCCcEEEE
Q 040805 178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWG-QGTITVIREN----------------NRES------YNVKRGDIIRV 233 (540)
Q Consensus 178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G-~g~ig~V~~~----------------~~~~------~~l~~GDv~~i 233 (540)
.|--=++.+.||-..+-|+| .-.|=+++.-| ...|.+...+ ...+ ..|.+|+-|.|
T Consensus 105 ~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl 184 (246)
T 3kmh_A 105 CYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICL 184 (246)
T ss_dssp CEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEE
T ss_pred cceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEec
Confidence 45555678899988777766 44555666666 4444544433 1111 37899999999
Q ss_pred CCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805 234 PSGNTFYVTNTDDDEKLYIVKFIKSINLP 262 (540)
Q Consensus 234 PaG~~h~~~N~g~~e~l~~v~i~~~~~~p 262 (540)
|+|+-||+..-++.-++ +|.=+.+.|.+
T Consensus 185 ~Pg~~H~F~ae~g~G~v-ligEVSt~NDD 212 (246)
T 3kmh_A 185 PPGLYHSFWAEAGFGDV-LVGEVSSVNDD 212 (246)
T ss_dssp CTTEEEEEEECTTSCCE-EEEEEEECCCT
T ss_pred CCCCEEEEEecCCCccE-EEEEcccCcCC
Confidence 99999999997532234 44445456654
No 283
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=81.32 E-value=2.6 Score=42.41 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=38.4
Q ss_pred ceeeeeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805 179 YRLGILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT 242 (540)
Q Consensus 179 ~rl~~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~ 242 (540)
+.+..+.+.+ ...... +.. .|+.|++| |++.. +..+..|++||+++|||+..-+..
T Consensus 230 F~v~~~~~~~-~~~~~~--~~~~~il~v~~G-~~i~~----~~~~~~l~~G~~~~ipa~~~~~~i 286 (300)
T 1zx5_A 230 FGLEVVDVTG-TAEIKT--GGVMNILYAAEG-YFILR----GKETADLHRGYSCLVPASTDSFTV 286 (300)
T ss_dssp EEEEEEEEEE-EEEEEC--CSBCEEEEEEES-CEEEE----SSSEEEECTTCEEEECTTCCEEEE
T ss_pred EEEEEEEECC-ceEEec--CCceEEEEEccc-EEEEe----CCeEEEEccceEEEEeCCCceEEE
Confidence 4444446653 332322 666 89999999 98775 234578999999999999855544
No 284
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=81.00 E-value=8.2 Score=34.05 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=44.0
Q ss_pred CCCcccccc---ccCCC--eEEEEEeeEEEEEEEecCCc----eEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 187 NPQTFVTPT---HLDAD--AVFFVSWGQGTITVIRENNR----ESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 187 ~Pggl~~Ph---~~~A~--ei~yV~~G~g~ig~V~~~~~----~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
-|.+++.+| ...+. ..+-|++|+..+-+.+..+. +..-+.+|+..+||++..|.+.-..
T Consensus 22 lP~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~ls 89 (127)
T 3bb6_A 22 APAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMT 89 (127)
T ss_dssp SCGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESS
T ss_pred ChHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcC
Confidence 477776677 43444 45789999998877665443 3445789999999999999999744
No 285
>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16
Probab=80.98 E-value=22 Score=32.27 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEece-EEEEEEcCCCCCCcccccccCCCcccc
Q 040805 354 NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGD-GYIEIACPHVSRSSSERRHQGSSTREE 432 (540)
Q Consensus 354 ~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~-g~v~vv~p~~~~~~~~~~~~~~~~~~~ 432 (540)
++|++++........-+. -.++.+.-|.+|....-|=..+|+||-+.-.|. ..+-++.+++..
T Consensus 21 EGG~yrEt~Rs~~~~~R~-~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~--------------- 84 (154)
T 1znp_A 21 EGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREV--------------- 84 (154)
T ss_dssp TSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCC---------------
T ss_pred CCccEEEEEeCCCCCCCc-ceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcE---------------
Confidence 666666655443222222 245666668888865544423699988888886 677788886631
Q ss_pred CCccceEEeeeeCCCcE--EEECCCCeEEEEecCCCCEEEEE
Q 040805 433 GSATYHKVSSRIRTDSA--YIVPAGHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 433 ~~~~~~~~~~~l~~GDV--~vVPaG~~h~~~n~~~e~l~~v~ 472 (540)
.-.++-.++..|++ +|||+|+...-...+ +..+|+
T Consensus 85 ---~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~g--~~~LVs 121 (154)
T 1znp_A 85 ---QTFTLGPAILEGERPQVIVPANCWQSAESLG--DFTLVG 121 (154)
T ss_dssp ---EEEEESSCTTTTEESEEEECTTCEEEEEESS--SEEEEE
T ss_pred ---EEEEeCCCcccCcccEEEEcCCEEEEeeECC--CeEEEE
Confidence 00234456677875 899999988765443 455554
No 286
>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}
Probab=80.69 E-value=23 Score=34.18 Aligned_cols=153 Identities=11% Similarity=0.094 Sum_probs=80.5
Q ss_pred CCceEEEecCCCCC------CCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceE-EEEEEcCCCCCCcc--cccc
Q 040805 354 NFGELFEADSNDFR------PLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG-YIEIACPHVSRSSS--ERRH 424 (540)
Q Consensus 354 ~~G~~~~~~~~~~p------~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g-~v~vv~p~~~~~~~--~~~~ 424 (540)
++|++.+....... .-+ .-.+..+.-|.+|....-|- -+|+||-+.-.|.. .+-++.+++..... -..+
T Consensus 35 EGG~yrEt~Rs~~~v~~~~~~~R-~~~TaIYfLL~~g~~S~~HR-v~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~~ 112 (225)
T 3m3i_A 35 EGGYYSEVVRSAHKVDNEEGNRR-HAYTTIYFLCTPESPSHLHR-LCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQPP 112 (225)
T ss_dssp TSSEEEEEEECSSEEECTTSCEE-ESCEEEEEEECSSSCEEEEE-CSSEEEEEEEEESCEEEEEEESSSTTTTC------
T ss_pred CCceEEEEEECCCcccCCCCCCc-ccceeEEEEecCCCCcccEE-ecCCEEEEEECCCCEEEEEEcCCCccccccccccc
Confidence 56666555543321 111 23567778889999754444 47889888888874 78888887610000 0000
Q ss_pred cCCCcccc-C-----CccceE--EeeeeCCCc--EEEECCCCeEEEEecCCC-----CEEEEEEEecCCCCccccccccc
Q 040805 425 QGSSTREE-G-----SATYHK--VSSRIRTDS--AYIVPAGHPVVTVASQNN-----NLEVVCFEINAEGNIRFPLAGRN 489 (540)
Q Consensus 425 ~~~~~~~~-~-----~~~~~~--~~~~l~~GD--V~vVPaG~~h~~~n~~~e-----~l~~v~F~~~a~~~~~~~LAG~~ 489 (540)
..-+.+.+ . ...|++ +-.+|..|+ .+|||+|+.....-.++. +..+|+=-+. |.+.| +
T Consensus 113 ~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVa---PGFdF-~--- 185 (225)
T 3m3i_A 113 AAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVS---PGFDY-R--- 185 (225)
T ss_dssp ------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEE---SCCCG-G---
T ss_pred ccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEc---CCccc-h---
Confidence 00000000 0 001222 333456676 579999998766543322 4555543223 22221 1
Q ss_pred cccccCCHHHHHHHcCCCHHHHHHhhc
Q 040805 490 KIFKVMESEAKELAFNTRADEVERVFG 516 (540)
Q Consensus 490 svl~~~~~evla~AF~vs~e~v~kl~~ 516 (540)
-|.-++++-|...|.--++.|++|-.
T Consensus 186 -DFel~~~~~L~~~~P~~~~~I~~lt~ 211 (225)
T 3m3i_A 186 -DFEIFTQAQLMELYPQHEAVIKQMAY 211 (225)
T ss_dssp -GCEECBHHHHHHHCGGGHHHHHHHSB
T ss_pred -hcEecCHHHHHHHCchHHHHHHHhch
Confidence 12224677777788777888888864
No 287
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=80.63 E-value=7.4 Score=38.27 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=52.3
Q ss_pred EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCC-
Q 040805 378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGH- 456 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~- 456 (540)
...+.||+-+.||=|.+-..|.||++|+..-. ++.+. ...|++|||-++.||.
T Consensus 68 ~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn------------------------~~~i~~GdvQ~MtAG~G 121 (256)
T 2vec_A 68 QEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGN------------------------HVQASAGEALLLSTQPG 121 (256)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSC------------------------EEEEETTEEEEECCCTT
T ss_pred ccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCC------------------------EEEECCCeEEEEECCCC
Confidence 46678888889999977777999999987665 33331 1368999999998876
Q ss_pred -eEEEEecC-CCCEEEEEE
Q 040805 457 -PVVTVASQ-NNNLEVVCF 473 (540)
Q Consensus 457 -~h~~~n~~-~e~l~~v~F 473 (540)
.|..+|.. ++++.++-+
T Consensus 122 I~HsE~n~~~~~~l~~lQl 140 (256)
T 2vec_A 122 VSYSEHNLSKDKPLTRMQL 140 (256)
T ss_dssp CCEEEEECCSSSCEEEEEE
T ss_pred eEEEEEECCCCceEEEEEE
Confidence 78888853 467877544
No 288
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=79.83 E-value=8.7 Score=32.84 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
..++|+.-|+.|...+-+ |+...-..+.+|+.|.||+..-+-+.-. +...++|
T Consensus 52 T~~~E~MevvsG~l~V~L--pG~~eW~~~~aGesF~VpanssF~lkv~---~~t~Y~C 104 (106)
T 3eo6_A 52 SEVAETIRVLSGMAYYHA--EGANDVQELHAGDSMVIPANQSYRLEVM---EPLDYLL 104 (106)
T ss_dssp CSSCEEEEEEEEEEEEEC--TTCSSCEEEETTCEEEECSSSCEEEEEE---EEEEEEE
T ss_pred CCCcEEEEEEEeEEEEEC--CCCccCEEECCCCEEEECCCCcEEEEEC---ceEEEEE
Confidence 469999999999997766 7766667899999999999988887664 2455554
No 289
>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*
Probab=79.13 E-value=36 Score=32.29 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=48.5
Q ss_pred ceEEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCc--EE
Q 040805 374 ITVSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS--AY 450 (540)
Q Consensus 374 isv~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD--V~ 450 (540)
.++.+.-|.+++ +..-|=. +|+||-|.-.|.+..-++.+++.. .-.++-.+|..|+ .+
T Consensus 79 ~TaIYfLL~~~~~~S~wHRv-~sdEiW~~h~G~p~~~li~~dg~~------------------~~~~LG~dl~~Ge~pQ~ 139 (203)
T 1xe7_A 79 STLIYYLLTPDSPIGKFHKN-INRIIHILQRGKGQYVLVYPDGQV------------------KSFKVGFDYKNGEVSQW 139 (203)
T ss_dssp CEEEEEEEBTTBCEEEEEEE-SSCEEEEEEEECEEEEEECTTSCE------------------EEEEESSCGGGTCBSEE
T ss_pred eeEEEEEEcCCCCcccceee-CCCEEEEEEcCCccEEEEcCCCCE------------------EEEEeCCCcccCcccEE
Confidence 456666788887 5666653 799999999998877788887531 0023344556666 48
Q ss_pred EECCCCeEEEEe
Q 040805 451 IVPAGHPVVTVA 462 (540)
Q Consensus 451 vVPaG~~h~~~n 462 (540)
|||+|+...-..
T Consensus 140 vVPaG~WqaA~~ 151 (203)
T 1xe7_A 140 VVPGGVFKASFL 151 (203)
T ss_dssp EECTTCEEEEEE
T ss_pred EEcCCEEEEeEe
Confidence 999999887543
No 290
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=76.55 E-value=1.2 Score=27.58 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=23.1
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHH
Q 040805 32 QCKHQCRARQQYDEKQKEQCARTCEE 57 (540)
Q Consensus 32 ~c~~~c~~~~~~~~~~~~~c~~~c~~ 57 (540)
|||--|-.|+-.+.+-.+.|...||+
T Consensus 1 qckvmcyaqrhsspellrrcldncek 26 (26)
T 2plx_B 1 QCKVMCYAQRHSSPELLRRCLDNCEK 26 (26)
T ss_dssp CHHHHHHHBCCCCHHHHHHHHHHHTC
T ss_pred CceEEeehhhcCCHHHHHHHHhcccC
Confidence 59999999999899999999999973
No 291
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=75.53 E-value=2.2 Score=28.95 Aligned_cols=27 Identities=22% Similarity=0.684 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHH
Q 040805 31 KQCKHQCRARQQYDEKQKEQCARTCEE 57 (540)
Q Consensus 31 ~~c~~~c~~~~~~~~~~~~~c~~~c~~ 57 (540)
+.|+.||-....-..=.+++|+.+|+.
T Consensus 5 ~eCRrqC~Rr~edePWr~QECm~qCrr 31 (37)
T 2l2r_A 5 GSCRSQCMRRHEDEPWRVQECVSQCRR 31 (37)
T ss_dssp CCHHHHHHHHTSSCGGGHHHHHHHHHS
T ss_pred cHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 459999943333234468999999974
No 292
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=75.95 E-value=0.67 Score=31.54 Aligned_cols=32 Identities=28% Similarity=0.819 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Q 040805 29 ELKQCKHQCRARQQYDEKQKEQCARTCEEYYKE 61 (540)
Q Consensus 29 ~~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~ 61 (540)
||..|+.-|+..+- +-+-.-.|...|++-|..
T Consensus 7 eleecqnvcrmkrw-stemvhrcekkceekfer 38 (41)
T 2lqx_A 7 ELEECQNVCRMKRW-STEMVHRCEKKCEEKFER 38 (41)
Confidence 69999999998764 555667788888876654
No 293
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=73.64 E-value=12 Score=36.40 Aligned_cols=69 Identities=12% Similarity=0.049 Sum_probs=51.1
Q ss_pred EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCC-
Q 040805 378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGH- 456 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~- 456 (540)
...+.||+-+.||=|.+=..|.||++|...-. ++.+. . ..|++|||-.+-||.
T Consensus 45 ~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn---------------------~---~~i~~GdvQ~MtAG~G 98 (242)
T 1tq5_A 45 DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN---------------------K---EQVPAGEFQIMSAGTG 98 (242)
T ss_dssp EEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC---------------------E---EEEETTCEEEEECTTC
T ss_pred cceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eCCCC---------------------c---EEECCCcEEEEECCCC
Confidence 56678888889999988888999999986654 33331 1 469999999998875
Q ss_pred -eEEEEecC-CCCEEEEE
Q 040805 457 -PVVTVASQ-NNNLEVVC 472 (540)
Q Consensus 457 -~h~~~n~~-~e~l~~v~ 472 (540)
.|..+|.. ++++.++=
T Consensus 99 I~HsE~~~~~~~~l~~lQ 116 (242)
T 1tq5_A 99 IRHSEYNPSSTERLHLYQ 116 (242)
T ss_dssp EEEEEECCCSSCCEEEEE
T ss_pred cEEEEEcCCCCCeEEEEE
Confidence 56777753 45677653
No 294
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=73.12 E-value=18 Score=31.56 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=43.1
Q ss_pred CCccccccccCCCeE--EEEEeeEEEEEEEecCCc----eEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 188 PQTFVTPTHLDADAV--FFVSWGQGTITVIRENNR----ESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 188 Pggl~~Ph~~~A~ei--~yV~~G~g~ig~V~~~~~----~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
|-+++..|-..+.-| +-|++|+.+.-+....+. ...-+.+|+..+||+...|.+.-++
T Consensus 25 P~~l~~~HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sd 88 (119)
T 3dl3_A 25 PEALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSD 88 (119)
T ss_dssp CHHHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECT
T ss_pred hHHHHhccCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECC
Confidence 445555555566655 579999998887665432 4557899999999999999999554
No 295
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=73.01 E-value=20 Score=29.89 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=52.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV 452 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV 452 (540)
|-......|.||- -++++.+.|+.=|+.|...+.+-.... . ..+++||.|.|
T Consensus 22 G~~~TvGVm~pGe---ytF~T~~~E~M~vvsG~~~V~lpg~~e---------------------w----~~~~aGesF~V 73 (94)
T 2oyz_A 22 GQDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRVGEAD---------------------W----TTYSSGESFDV 73 (94)
T ss_dssp TEEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEETTCSS---------------------C----EEEETTCEEEE
T ss_pred CCCEEEEEEeceE---EEEcCCCeEEEEEEEeEEEEEcCCCCc---------------------C----EEECCCCEEEE
Confidence 4445566677774 578899999999999999887654321 1 35789999999
Q ss_pred CCCCeEEEEecCCCCEEEEEE
Q 040805 453 PAGHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F 473 (540)
|++.-+-+... +...++|.
T Consensus 74 pans~F~l~v~--~~~~YlC~ 92 (94)
T 2oyz_A 74 EGNSSFELQVK--DATAYLCE 92 (94)
T ss_dssp CSSEEEEEEES--SCEEEEEE
T ss_pred CCCCEEEEEEc--ccEeEEEE
Confidence 99998877654 45677764
No 296
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=71.78 E-value=6.3 Score=33.30 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=38.8
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
....+.+|..+...--.++.++||++|.+.+...++++.. ...+.+||+|-
T Consensus 29 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 81 (149)
T 2pqq_A 29 SEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIG 81 (149)
T ss_dssp EEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEES
T ss_pred eEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEec
Confidence 3457888887665555678899999999999888776543 46788999873
No 297
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=70.42 E-value=5.2 Score=33.64 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=35.3
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce-----EEeeCCCcEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE-----SYNVKRGDIIR 232 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-----~~~l~~GDv~~ 232 (540)
+....+.+|..+...--.++.++||++|.+.+....+++.. ...+.+||+|-
T Consensus 29 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 29 SEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp EEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred hcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 34457788887666556689999999999988776665432 45678888873
No 298
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=69.98 E-value=8.9 Score=34.34 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=39.1
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
...+++|..+...--.++.++||++|.+.+..+++++.+ ...+.+||++-
T Consensus 32 ~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~g 83 (194)
T 3dn7_A 32 LKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLS 83 (194)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEC
T ss_pred EEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEe
Confidence 457788887665555688999999999999988877654 35679999985
No 299
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=67.65 E-value=10 Score=34.10 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=39.2
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
...+.+|..+...--.++.+++|++|.+.+...++++.+ ...+.+||+|-.
T Consensus 15 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 67 (207)
T 2oz6_A 15 RRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGE 67 (207)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESC
T ss_pred eEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCccc
Confidence 346788887665555688899999999999988876553 457899999843
No 300
>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}
Probab=67.50 E-value=28 Score=34.44 Aligned_cols=83 Identities=12% Similarity=0.181 Sum_probs=50.8
Q ss_pred cCCceEEEecc-C-ccccccccccccceeeeeeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 155 SQHGRVAFLPK-F-TQRSKLLRGLEKYRLGILIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 155 ~e~G~i~~l~~-f-~~~~~~L~Gi~~~rl~~~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
.+++.++++-. + ...+| ++--..+.+..+.|+||+-+ +|--....-++||++|++.++ +. ...|.+||.+
T Consensus 142 ~~g~~~rviaG~~~g~~~p-~~~~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~----g~--~~~l~~~d~~ 214 (277)
T 2p17_A 142 EEGATIRVFSGSSKGVKAP-TKNIVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG----AD--NIEGKAGQAL 214 (277)
T ss_dssp ETTEEEEEEESEETTEECC-CCCSSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET----TT--TEEEETTEEE
T ss_pred eCCeEEEEEEcCccCCCCc-eecCCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC----CC--ceEeCCCcEE
Confidence 35667787642 1 22223 22123444555689999754 443334567899999997653 21 2369999999
Q ss_pred EECC-C----CeEEEEeC
Q 040805 232 RVPS-G----NTFYVTNT 244 (540)
Q Consensus 232 ~iPa-G----~~h~~~N~ 244 (540)
++.. | ...-+.+.
T Consensus 215 ~~~~~~~~~~~~l~l~a~ 232 (277)
T 2p17_A 215 FFSRHNRGEETELNVTAR 232 (277)
T ss_dssp EECCCCTTCEEEEEEEES
T ss_pred EEcCCCCCccceEEEEeC
Confidence 9986 7 55566664
No 301
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=66.94 E-value=9.2 Score=35.06 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDII 231 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~ 231 (540)
.....+++|..+...-..++.+++|++|.+.+...++++.+ ...+.+||+|
T Consensus 22 ~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 74 (213)
T 1o5l_A 22 GKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 74 (213)
T ss_dssp SEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEES
T ss_pred cEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEe
Confidence 33457788887666555688999999999999888776554 4578999987
No 302
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=66.93 E-value=11 Score=34.31 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=40.1
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
....+++|..+...-..++.++||++|.+.+...++++.+ ...+.+||+|-
T Consensus 23 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 75 (216)
T 4ev0_A 23 QRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFG 75 (216)
T ss_dssp EEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEEC
T ss_pred eEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEe
Confidence 3457788887666555688999999999999988777653 46789999984
No 303
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13
Probab=66.65 E-value=20 Score=35.88 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=39.2
Q ss_pred eeCCCccc-cccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 185 IANPQTFV-TPTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 185 ~l~Pggl~-~Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
.|.++..+ .+......|+ ++.+.|.+.|.+ ...+|.|..-|.++||.|...++..
T Consensus 63 ~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~v----dg~~f~lg~~dalYVp~G~~~v~~a 119 (289)
T 1ywk_A 63 EIILDKELGVDYFLERRELGVINIGGPGFIEI----DGAKETMKKQDGYYIGKETKHVRFS 119 (289)
T ss_dssp ECCCSGGGTSSSTTTTEEEEEEECSSCEEEEE----TTEEEEECTTCEEEECTTCCCEEEE
T ss_pred EcCCCceecccccCCCcEEEEEEccCeEEEEE----CCEEEecCCCCEEEeCCCCeEEEEE
Confidence 66766443 4444555555 566788998887 4567899999999999997755554
No 304
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=66.54 E-value=11 Score=34.98 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=40.0
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
....+.+|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-
T Consensus 35 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 35 VWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred EEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 3457788887665555688999999999999988877653 45789999984
No 305
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=66.47 E-value=13 Score=33.46 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=39.5
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDII 231 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~ 231 (540)
+....+.+|..+...--.++.+++|++|.+.+....+++.+ ...+.+||+|
T Consensus 62 ~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~f 114 (187)
T 3gyd_A 62 MQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAII 114 (187)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEE
T ss_pred cEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCee
Confidence 34457788887666556688999999999999988877653 4578999987
No 306
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=66.39 E-value=51 Score=28.29 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
......|.||- -+-++++.+.|+.=|+.|...|.+-.... . ..+.+|+-|.||+
T Consensus 38 ~kTlGVm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lpg~~e---------------------W----~~~~aGesF~Vpa 91 (111)
T 3hqx_A 38 KKTLGVILPTE-QPLTFETHVPERMEIISGECRVKIADSTE---------------------S----ELFRAGQSFYVPG 91 (111)
T ss_dssp EEEEEEECCCS-SCEEEECSSCEEEEEEESEEEEEETTCSS---------------------C----EEEETTCEEEECT
T ss_pred EEEEEEEeccc-cceEEcCCCcEEEEEEEeEEEEEcCCccc---------------------C----EEeCCCCEEEECC
Confidence 45556677772 11578899999999999999887654321 1 3578999999999
Q ss_pred CCeEEEEecCCCCEEEEEE
Q 040805 455 GHPVVTVASQNNNLEVVCF 473 (540)
Q Consensus 455 G~~h~~~n~~~e~l~~v~F 473 (540)
+.-+-+... +...++|-
T Consensus 92 nssF~lkv~--~~~~Y~C~ 108 (111)
T 3hqx_A 92 NSLFKIETD--EVLDYVCH 108 (111)
T ss_dssp TCEEEEECS--SCEEEEEE
T ss_pred CCcEEEEEC--cceeEEEE
Confidence 999887654 46778873
No 307
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=66.05 E-value=10 Score=34.22 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=36.4
Q ss_pred eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
.+++|..+...-..++.++||++|.+.+...++++.+ ...+.+||+|-.
T Consensus 3 ~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge 53 (195)
T 3b02_A 3 RFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE 53 (195)
T ss_dssp EECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG
T ss_pred EcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech
Confidence 4567766544444578899999999999888776553 457899999843
No 308
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=65.73 E-value=6.3 Score=33.58 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=36.3
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDII 231 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~ 231 (540)
.....+++|..+...--.++.++||++|.+.+....+++.. ...+.+||+|
T Consensus 35 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~ 87 (154)
T 2z69_A 35 SDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 87 (154)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEE
T ss_pred CcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCee
Confidence 34457788887766556688899999999988776654432 4578889887
No 309
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=64.50 E-value=30 Score=29.52 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=48.8
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA 454 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa 454 (540)
......|.|| .-++++.+.|+.=|+.|...+.+-.... . ..+.+|+-|.||+
T Consensus 37 ~kTlGVm~PG---eY~F~T~~~E~MevvsG~l~V~LpG~~e---------------------W----~~~~aGesF~Vpa 88 (106)
T 3eo6_A 37 MHSLTLLHPG---VYTLSSEVAETIRVLSGMAYYHAEGAND---------------------V----QELHAGDSMVIPA 88 (106)
T ss_dssp EEEEEEECSE---EEEECCSSCEEEEEEEEEEEEECTTCSS---------------------C----EEEETTCEEEECS
T ss_pred eEEEEEEeee---EEEecCCCcEEEEEEEeEEEEECCCCcc---------------------C----EEECCCCEEEECC
Confidence 3455666777 4678999999999999998887533211 1 3578999999999
Q ss_pred CCeEEEEecCCCCEEEEE
Q 040805 455 GHPVVTVASQNNNLEVVC 472 (540)
Q Consensus 455 G~~h~~~n~~~e~l~~v~ 472 (540)
+.-+-+... +...++|
T Consensus 89 nssF~lkv~--~~t~Y~C 104 (106)
T 3eo6_A 89 NQSYRLEVM--EPLDYLL 104 (106)
T ss_dssp SSCEEEEEE--EEEEEEE
T ss_pred CCcEEEEEC--ceEEEEE
Confidence 998876543 2455555
No 310
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.36 E-value=13 Score=33.52 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=39.7
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
...+++|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-.
T Consensus 21 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~ 73 (210)
T 3ryp_A 21 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 73 (210)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESC
T ss_pred EEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 346788887665555688999999999999888776554 457899999853
No 311
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=63.12 E-value=14 Score=33.93 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=40.4
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
....+++|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-.
T Consensus 35 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 88 (230)
T 3iwz_A 35 HRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGE 88 (230)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred eEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEe
Confidence 3457788887665555688999999999999988877654 457899999853
No 312
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=62.99 E-value=16 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=20.0
Q ss_pred EeeeeCCCcEEEECCCCeEEEEecCCCCEE
Q 040805 440 VSSRIRTDSAYIVPAGHPVVTVASQNNNLE 469 (540)
Q Consensus 440 ~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~ 469 (540)
+-..++.||.++++.||.-..+..+++.+.
T Consensus 55 ~p~~VkvGD~Vlf~k~y~Gtevk~dgeey~ 84 (97)
T 1pcq_O 55 KPLDVKVGDIVIFNDGYGVKSEKIDNEEVL 84 (97)
T ss_dssp EECSCCTTCEEEECCCSSCEEEEETTEEEE
T ss_pred EecccCCCCEEEECCccCCeEEEECCEEEE
Confidence 345799999999999666554444334333
No 313
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.71 E-value=14 Score=33.84 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=39.0
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
...+.+|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-
T Consensus 31 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G 82 (227)
T 3d0s_A 31 PVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFG 82 (227)
T ss_dssp EEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred EEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEe
Confidence 447788887655555688899999999999888776553 45789999884
No 314
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=61.97 E-value=35 Score=31.10 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=46.5
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.....+.+|..+...--.++.++||++|.+.+. ..+++.+ ...+.+||+|- .-..+.+.... +..++.+
T Consensus 23 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG--~~~~~~~~A~~---~~~v~~i 93 (222)
T 1ft9_A 23 FRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC--MHSGCLVEATE---RTEVRFA 93 (222)
T ss_dssp CEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE--SCSSCEEEESS---CEEEEEE
T ss_pred CcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec--CCCCEEEEEcc---ceEEEEE
Confidence 334577888876555556788999999999995 6665543 45789999998 33444555543 3555433
No 315
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=61.39 E-value=13 Score=33.65 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=36.2
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
+....+.||......--.++.++||++|.+.+.. +++.....+.+||+|
T Consensus 94 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~~~~~l~~G~~f 142 (198)
T 2ptm_A 94 LEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGVIATSLSDGSYF 142 (198)
T ss_dssp CEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSCEEEEECTTCEE
T ss_pred ccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCeEEEEecCCCEe
Confidence 3445778888766555567889999999987654 555566778888887
No 316
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=61.19 E-value=16 Score=33.24 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=39.9
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~ 231 (540)
....+++|......--.++.++||++|.+.+...++++.+ ...+.+||++
T Consensus 27 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 78 (220)
T 3dv8_A 27 ITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMC 78 (220)
T ss_dssp EEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEE
T ss_pred ceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCee
Confidence 3457888888766666788999999999999988887654 3578999996
No 317
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=61.01 E-value=16 Score=31.56 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDII 231 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~ 231 (540)
...+.+|..+...--.++.+++|++|.+.+.. .+++.. ...+.+||+|
T Consensus 63 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~f 112 (161)
T 3idb_B 63 EKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSF 112 (161)
T ss_dssp EEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEE
T ss_pred eeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEe
Confidence 35778888766655668899999999998887 444332 4567888866
No 318
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=60.75 E-value=5.1 Score=40.98 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.5
Q ss_pred EeeCCCcEEEECCCCeEEEEeCCC
Q 040805 223 YNVKRGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 223 ~~l~~GDv~~iPaG~~h~~~N~g~ 246 (540)
+.=++||.|++++|+.||..|.|-
T Consensus 281 ~~QkpGd~Vi~~PgayH~v~n~G~ 304 (332)
T 2xxz_A 281 FVQRPGDLVWINAGTVHWVQATGW 304 (332)
T ss_dssp EEECTTCEEEECTTCEEEEEESSS
T ss_pred EEECCCCEEEECCCceEEEEecce
Confidence 355999999999999999999984
No 319
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=60.68 E-value=38 Score=30.79 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=46.6
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF 255 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i 255 (540)
.....+++|..+...--.++.++||++|.+.+ ...+++.+ ...+.+||+|-.|. .+.+.... +..++.+
T Consensus 27 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~-~~~~~G~~~~~~~~~~G~~~G~~~--~~~~~A~~---~~~v~~i 97 (220)
T 2fmy_A 27 FREQRYSKKAILYTPNTERNLVFLVKSGRVRV-YLAYEDKEFTLAILEAGDIFCTHT--RAFIQAME---DTTILYT 97 (220)
T ss_dssp SEEEEECTTCEEECTTCSSCEEEEEEESEEEE-EEECSSCEEEEEEEETTCEEESCS--SSEEEESS---SEEEEEE
T ss_pred hheeEeCCCCEEECCCCCCCeEEEEEecEEEE-EECCCCCEEEEEEcCCCCEeCCcc--ceEEEEcC---cEEEEEE
Confidence 34457788887655555688999999999999 56665543 46789999998743 34444443 3555433
No 320
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=60.36 E-value=13 Score=33.66 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=37.7
Q ss_pred eeeCCCccccccccCC--CeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 184 LIANPQTFVTPTHLDA--DAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A--~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
..+++|..+...--.+ +.++||++|.+.+...++++.+ ...+.+||+|-.
T Consensus 8 ~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 61 (202)
T 2zcw_A 8 VSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE 61 (202)
T ss_dssp EEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT
T ss_pred EEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee
Confidence 3567887765544456 7899999999999888876554 457899998853
No 321
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=59.85 E-value=18 Score=34.25 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=42.4
Q ss_pred eeCCCccccccccCC---CeEEEEEe--eEEEEEEEecCC------------------c-eEEeeCCCcEEEECCCCeEE
Q 040805 185 IANPQTFVTPTHLDA---DAVFFVSW--GQGTITVIRENN------------------R-ESYNVKRGDIIRVPSGNTFY 240 (540)
Q Consensus 185 ~l~Pggl~~Ph~~~A---~ei~yV~~--G~g~ig~V~~~~------------------~-~~~~l~~GDv~~iPaG~~h~ 240 (540)
..++|++..+|.|.. +-++||-- +.|.+.+.+|.. . ....-++||++++|+-+.|.
T Consensus 109 ~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~l~H~ 188 (216)
T 2rg4_A 109 ILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESWLRHE 188 (216)
T ss_dssp EECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETTSCEE
T ss_pred EcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCCCEEe
Confidence 568999988887643 44567655 346677766631 1 13466999999999999999
Q ss_pred EEeC
Q 040805 241 VTNT 244 (540)
Q Consensus 241 ~~N~ 244 (540)
+.-.
T Consensus 189 V~p~ 192 (216)
T 2rg4_A 189 VPMN 192 (216)
T ss_dssp ECCC
T ss_pred ccCC
Confidence 8754
No 322
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=59.49 E-value=11 Score=34.71 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=36.2
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc--eEEeeCCCcEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--ESYNVKRGDIIR 232 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--~~~~l~~GDv~~ 232 (540)
.....+++|..+...--.++.++||++|.+.+...++++. ....+.+||+|-
T Consensus 33 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G 86 (232)
T 2gau_A 33 IQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFG 86 (232)
T ss_dssp CEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEES
T ss_pred CeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEee
Confidence 3445788888766555568889999999999887776544 356889999883
No 323
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=59.05 E-value=16 Score=30.60 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=33.6
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
...+.+|..+...--.++.+++|++|.+.+.. ++.....+.+||+|
T Consensus 48 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~~~~~~~~G~~f 93 (139)
T 3ocp_A 48 PVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGVKLCTMGPGKVF 93 (139)
T ss_dssp EEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTEEEEEECTTCEE
T ss_pred EEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCEEEEEeCCCCEe
Confidence 45778888766555568899999999998732 34455677888876
No 324
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Probab=59.02 E-value=29 Score=34.37 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
-|-+-.+|.+.|+=-..|-.|.--.| .||++|+..++ + .+|.+|+-.+
T Consensus 89 ~GaSTl~V~fpp~~~~P~Gi~~ad~E-~fVL~G~i~~G-----~--------------------------~~l~~h~Y~f 136 (303)
T 2qdr_A 89 SGASTSRVVLPPKFEAPSGIFTADLE-IFVIKGAIQLG-----E--------------------------WQLNKHSYSF 136 (303)
T ss_dssp TSCEEEEEEECTTCEECCBEESSCEE-EEEEESEEEET-----T--------------------------EEECTTEEEE
T ss_pred CCcceEEEEecCCCCCCCcccccceE-EEEEEeEEEeC-----C--------------------------EEecCCceEE
Confidence 36777788888888888888754455 99999998774 1 2588999999
Q ss_pred ECCCCeE-EEEecCCCCEEEEEE
Q 040805 452 VPAGHPV-VTVASQNNNLEVVCF 473 (540)
Q Consensus 452 VPaG~~h-~~~n~~~e~l~~v~F 473 (540)
+|+|... .+...|+++.+++.|
T Consensus 137 ~PaGV~~~~~kv~~~~g~~iL~f 159 (303)
T 2qdr_A 137 IPAGVRIGSWKVLGGEEAEILWM 159 (303)
T ss_dssp ECTTCCBCCEEEETTSCEEEEEE
T ss_pred ecCCCccCceeecCCCCcEEEEE
Confidence 9999966 344445778888888
No 325
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=58.97 E-value=17 Score=34.02 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=39.3
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
+..+++|..+...--.++.+++|++|.+.+...++++.+ ...+.+||+|-
T Consensus 45 ~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G 96 (243)
T 3la7_A 45 VETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFG 96 (243)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEES
T ss_pred eEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEc
Confidence 346788887665555688999999999999988877654 45789999884
No 326
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=58.77 E-value=16 Score=34.20 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=40.7
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
.....+++|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-
T Consensus 32 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 85 (250)
T 3e6c_C 32 GLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIG 85 (250)
T ss_dssp SEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEEC
T ss_pred CeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEe
Confidence 34457788888666556688999999999999988877654 45789999984
No 327
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=58.42 E-value=19 Score=30.97 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=35.3
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
+....+.+|..+...-..++.+++|++|.+.+.. ++.....+.+||+|
T Consensus 61 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~~~~~~~~G~~f 108 (154)
T 3pna_A 61 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNEWATSVGEGGSF 108 (154)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTEEEEEECTTCEE
T ss_pred ceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCEEEEEecCCCEe
Confidence 3345778888876555568999999999998765 34455568888876
No 328
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=57.92 E-value=12 Score=38.95 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.5
Q ss_pred eEEeeCCCcEEEECCCCeEEEEeCC
Q 040805 221 ESYNVKRGDIIRVPSGNTFYVTNTD 245 (540)
Q Consensus 221 ~~~~l~~GDv~~iPaG~~h~~~N~g 245 (540)
.++.-..||+|+||+|.+|-+.|..
T Consensus 293 ~~~~Q~~GeavfiPaG~~HQV~Nl~ 317 (392)
T 2ypd_A 293 CTLIQFLGDAIVLPAGALHQVQNFH 317 (392)
T ss_dssp EEEEEETTCEEEECTTCEEEEEESS
T ss_pred EEEEEcCCCEEEecCCCHHHHhccc
Confidence 4567799999999999999999986
No 329
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=57.55 E-value=13 Score=34.20 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=39.2
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
+....+.+|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-
T Consensus 29 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 29 VTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp EEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred cEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe
Confidence 34457788887666556688999999999999888776554 46789999984
No 330
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=57.04 E-value=19 Score=34.12 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=39.7
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
...+.+|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-.
T Consensus 71 ~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge 123 (260)
T 3kcc_A 71 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 123 (260)
T ss_dssp EEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESC
T ss_pred EEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 447788887655555688999999999999988776654 467899999843
No 331
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=56.41 E-value=1e+02 Score=30.02 Aligned_cols=97 Identities=8% Similarity=0.059 Sum_probs=62.4
Q ss_pred cceEEEEEEcCCCcccccccCCCcEEEEEEec-eEEEEEEcCCCCCCccc------ccccCCCccccCCccceEEeeeeC
Q 040805 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAG-DGYIEIACPHVSRSSSE------RRHQGSSTREEGSATYHKVSSRIR 445 (540)
Q Consensus 373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G-~g~v~vv~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 445 (540)
-+..-.+.+.+|=....|+|+.-.|=++..-| ...|.+..+.....-.. -.|. +..-..-..+ .|.
T Consensus 105 ~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~-----~~~~~aG~~i--~L~ 177 (246)
T 3kmh_A 105 CYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGC-----RQKHTAGSQL--RLS 177 (246)
T ss_dssp CEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTE-----EEEECTTCEE--EEC
T ss_pred cceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCe-----EEEeCCCCEE--EEC
Confidence 47788889999999999999998888777776 66777766653210000 0000 0000000122 689
Q ss_pred CCcEEEECCCCeEEEEecCCC-CEEEEEEEec
Q 040805 446 TDSAYIVPAGHPVVTVASQNN-NLEVVCFEIN 476 (540)
Q Consensus 446 ~GDV~vVPaG~~h~~~n~~~e-~l~~v~F~~~ 476 (540)
+|+-+-+|+|.-|++.+.+.. ++.+-.+.+.
T Consensus 178 PGESiTl~Pg~~H~F~ae~g~G~vligEVSt~ 209 (246)
T 3kmh_A 178 PGESICLPPGLYHSFWAEAGFGDVLVGEVSSV 209 (246)
T ss_dssp TTCEEEECTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred CCCeEecCCCCEEEEEecCCCccEEEEEcccC
Confidence 999999999999999887542 3554445433
No 332
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=56.34 E-value=15 Score=33.99 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=39.4
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIR 232 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~ 232 (540)
.....+.+|..+...--.++.++||++|.+.+...++++.+ ...+.+||+|-
T Consensus 43 ~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 43 LHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred cEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 34457888887665555688999999999999887766543 45789999884
No 333
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=55.89 E-value=22 Score=30.33 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=34.4
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR 232 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~ 232 (540)
...+.+|..+...--.++.+++|++|.+.+.. .......+.+||+|-
T Consensus 52 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~~~~~~~~~~G~~fG 98 (160)
T 4f8a_A 52 TVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ---DDEVVAILGKGDVFG 98 (160)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESEEEEEE---TTEEEEEEETTCEEE
T ss_pred eeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE---CCEEEEEecCCCEeC
Confidence 45778888766665668899999999998754 333455677888774
No 334
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Probab=55.23 E-value=49 Score=32.90 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=53.7
Q ss_pred cCCceEEEecc-C-ccccccccccccceeeeeeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 155 SQHGRVAFLPK-F-TQRSKLLRGLEKYRLGILIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 155 ~e~G~i~~l~~-f-~~~~~~L~Gi~~~rl~~~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
.++..++++.- + ...+|.. --..+.+..+.|+||+-+ +|--....-++||++|.+.++ +......+.++.++
T Consensus 144 ~~g~~v~viaG~~~g~~~p~~-~~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~----g~~~~~~~~~~~~~ 218 (290)
T 1j1l_A 144 KDGVTVAVISGEALGIKSKVY-TRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG----PDDAQQKIEPHHTA 218 (290)
T ss_dssp ETTEEEEEEESEETTEECCCC-CSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES----CTTSCEEECTTEEE
T ss_pred ECCEEEEEEcCCcccCCCcee-ccCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC----CcccceeccCceEE
Confidence 35567777632 1 1112321 112344555689999754 333234567899999998663 22112457778888
Q ss_pred EECCCCeEEEEeCCCCccEEEE
Q 040805 232 RVPSGNTFYVTNTDDDEKLYIV 253 (540)
Q Consensus 232 ~iPaG~~h~~~N~g~~e~l~~v 253 (540)
++..|-...+.|.+ .++++++
T Consensus 219 ~l~~gd~~~i~~~a-~~~a~~L 239 (290)
T 1j1l_A 219 VLGEGDSVQVENKD-PKRSHFV 239 (290)
T ss_dssp EECSCSEEEEECCS-SSCEEEE
T ss_pred EecCCCEEEEEEcC-CCCcEEE
Confidence 88888777777642 2345554
No 335
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=54.06 E-value=29 Score=28.99 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=49.0
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|-+....= -.++.+.+|++|..++....+++. ......+.+||+|-...
T Consensus 28 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~G~~~~ 85 (149)
T 2pqq_A 28 MSEVTLARGDTLFHEG-DPGDRLYVVTEGKVKLHRTSPDGR---------------------ENMLAVVGPSELIGELSL 85 (149)
T ss_dssp CEEEEECTTCEEECTT-SEECEEEEEEESCEEEEEECTTSS---------------------EEEEEEECTTCEESGGGG
T ss_pred ceEEEeCCCCEEECCC-CCCCeEEEEEecEEEEEEECCCCc---------------------EEEEEEcCCcCEechHHh
Confidence 4567778887765543 346779999999999998887653 34457899999874321
Q ss_pred --C--CeEEEEecCCCCEEEEEEE
Q 040805 455 --G--HPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 --G--~~h~~~n~~~e~l~~v~F~ 474 (540)
+ ++..+.+. ++..++.+.
T Consensus 86 ~~~~~~~~~~~a~--~~~~~~~i~ 107 (149)
T 2pqq_A 86 FDPGPRTATGTAL--TEVKLLALG 107 (149)
T ss_dssp TSCEECSSEEEES--SCEEEEEEE
T ss_pred cCCCCcceEEEEc--cceEEEEEe
Confidence 1 22334444 345666663
No 336
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=53.57 E-value=19 Score=32.56 Aligned_cols=48 Identities=13% Similarity=0.341 Sum_probs=34.1
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
+....+.||..+...--.++.++||++|.+.+. .+++. ...+.+||+|
T Consensus 95 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~--~~~g~-~~~l~~G~~f 142 (202)
T 3bpz_A 95 LKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVL--TKGNK-EMKLSDGSYF 142 (202)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECEEEEE--CTTSC-CEEEETTCEE
T ss_pred CCceEECCCCEEEECCCcCCeEEEEeccEEEEE--ECCCe-EEEEcCCCEe
Confidence 334577898876655556788999999998763 44443 3468888887
No 337
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=50.31 E-value=9.1 Score=41.55 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.6
Q ss_pred EeeCCCcEEEECCCCeEEEEeCCC
Q 040805 223 YNVKRGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 223 ~~l~~GDv~~iPaG~~h~~~N~g~ 246 (540)
+.=++||.|++++|+.||..|.|-
T Consensus 340 ~vQkpGd~Vi~~PgayH~v~n~G~ 363 (531)
T 3avr_A 340 FIQRPGDLVWINAGTVHWVQAIGW 363 (531)
T ss_dssp EEECTTCEEEECTTCEEEEEESSS
T ss_pred EEECCCCEEEECCCceEEEEecce
Confidence 455999999999999999999984
No 338
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=49.92 E-value=34 Score=32.54 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=37.4
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc---eEEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR---ESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~---~~~~l~~GDv~ 231 (540)
....+.+|......--.++.+++|++|++.+....+++. ....+.+||+|
T Consensus 181 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 181 EPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred EEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 345678887766555568899999999998887665442 35678999988
No 339
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=49.63 E-value=23 Score=32.89 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=37.2
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEEC
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRVP 234 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~iP 234 (540)
..+.+|..+...--.++.+++|++|.+.+...++++.+ ...+ +||+|-..
T Consensus 21 ~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~ 72 (238)
T 2bgc_A 21 KQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMS 72 (238)
T ss_dssp EEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEES
T ss_pred EEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecch
Confidence 46788887655445678899999999999888876554 2345 89998654
No 340
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=48.62 E-value=62 Score=30.04 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=76.2
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE---
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV--- 452 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV--- 452 (540)
+....+.+|.++...= -.++.+.+|++|..++....++|. ..+...+.+||+|-.
T Consensus 32 ~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~~~~~~~G~~~G~~l~ 89 (250)
T 3e6c_C 32 GLIRDFAKGSAVIMPG-EEITSMIFLVEGKIKLDIIFEDGS---------------------EKLLYYAGGNSLIGKLYP 89 (250)
T ss_dssp SEEEEECTTCEEECTT-CCCCSEEEEEESCEEEEEECTTSC---------------------EEEEEEECTTCEECCCSC
T ss_pred CeEEEECCCCEEECCC-CCCCeEEEEEeeEEEEEEECCCCC---------------------EEEEEEecCCCEEeeecC
Confidence 5667777887765543 456779999999999999888763 345578899999842
Q ss_pred CCCCeEEEEecCCCCEEEEEEEecC------CCCc--------------------------------cccc---c---cc
Q 040805 453 PAGHPVVTVASQNNNLEVVCFEINA------EGNI--------------------------------RFPL---A---GR 488 (540)
Q Consensus 453 PaG~~h~~~n~~~e~l~~v~F~~~a------~~~~--------------------------------~~~L---A---G~ 488 (540)
.. +++.+.+.. +..++.+.... .++. ..+| + |.
T Consensus 90 ~~-~~~~~~A~~--~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~ 166 (250)
T 3e6c_C 90 TG-NNIYATAME--PTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGK 166 (250)
T ss_dssp CS-CCEEEEESS--SEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCE
T ss_pred CC-CceEEEEcc--cEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 33 566666763 56666653221 1110 0000 0 00
Q ss_pred -----ccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 489 -----NKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 489 -----~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
..+.-.++.+-+|..+|++.+++.++++.
T Consensus 167 ~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~ 200 (250)
T 3e6c_C 167 RVGDTYEITMPLSQKSIGEITGVHHVTVSRVLAS 200 (250)
T ss_dssp EETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHH
Confidence 01223578999999999999999988764
No 341
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=47.97 E-value=46 Score=30.48 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=50.0
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC--
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP-- 453 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP-- 453 (540)
+....+.+|-+....= -.++.+.+|++|..++....++|. ..+...+.+||+|-..
T Consensus 34 ~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~~~~~~~G~~~G~~~~ 91 (237)
T 3fx3_A 34 AVWRSYDRGETLFLQE-EKAQAIHVVIDGWVKLFRMTPTGS---------------------EAVVSVFTRGESFGEAVA 91 (237)
T ss_dssp CEEEEECTTCEEECTT-SCCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTEEECHHHH
T ss_pred CEEEEECCCCEEEcCC-CccceEEEEEeeEEEEEEECCCCC---------------------EEEEEEeCCCCEechHHH
Confidence 3456667777664443 457789999999999999888763 3455678999998432
Q ss_pred ---CCCeEEEEecCCCCEEEEEEE
Q 040805 454 ---AGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 454 ---aG~~h~~~n~~~e~l~~v~F~ 474 (540)
.-+++.+.+.. +..++.+.
T Consensus 92 ~~~~~~~~~~~a~~--~~~v~~i~ 113 (237)
T 3fx3_A 92 LRNTPYPVSAEAVT--PCEVMHIP 113 (237)
T ss_dssp HHTCCCSSEEEESS--SEEEEEEE
T ss_pred hcCCCCCceEEECC--ceEEEEEc
Confidence 22344555653 56666653
No 342
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=47.94 E-value=11 Score=40.67 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.7
Q ss_pred EeeCCCcEEEECCCCeEEEEeCCC
Q 040805 223 YNVKRGDIIRVPSGNTFYVTNTDD 246 (540)
Q Consensus 223 ~~l~~GDv~~iPaG~~h~~~N~g~ 246 (540)
+.=++||.|++++|+.||+.|.|-
T Consensus 315 ~iQkPGdfVit~PgtyH~Vqs~Gf 338 (510)
T 4ask_A 315 FVQRPGDLVWINAGTVHWVQATGW 338 (510)
T ss_dssp EEECTTCEEEECTTCEEEEEESSS
T ss_pred EEECCCCEEEECCCceEEEEecCe
Confidence 455999999999999999999984
No 343
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=47.92 E-value=43 Score=29.89 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=49.9
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|.++...= -.++.+.+|++|..++....++|. ..+...+.+||+|-...
T Consensus 13 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~~~~~~~g~~~G~~~~ 70 (207)
T 2oz6_A 13 CHRRRYTAKSTIIYAG-DRCETLFFIIKGSVTILIEDDDGR---------------------EMIIGYLNSGDFFGELGL 70 (207)
T ss_dssp SEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTCEESCTTT
T ss_pred cceEEECCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCC---------------------EEEEEEcCCCCCcccHHH
Confidence 3456777777764433 356779999999999998888763 34556789999984321
Q ss_pred --------CCeEEEEecCCCCEEEEEEE
Q 040805 455 --------GHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 --------G~~h~~~n~~~e~l~~v~F~ 474 (540)
-+++.+.+. ++..++.+.
T Consensus 71 ~~~~~~~~~~~~~~~A~--~~~~v~~i~ 96 (207)
T 2oz6_A 71 FEKEGSEQERSAWVRAK--VECEVAEIS 96 (207)
T ss_dssp CC-----CBCCSEEEES--SCEEEEEEE
T ss_pred hcCCCCCCCcceEEEEC--CcEEEEEEC
Confidence 134455665 346666653
No 344
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=47.89 E-value=32 Score=28.48 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=35.5
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEE---eeeeCCCcEEEE
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKV---SSRIRTDSAYIV 452 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~GDV~vV 452 (540)
+....+.+|-.....= -.++.+.+|++|...+....+++. ..+ ...+.+||+|-.
T Consensus 29 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~~~~G~~fG~ 86 (142)
T 3mdp_A 29 SEEKSFPTGSVIFKEN-SKADNLMLLLEGGVELFYSNGGAG---------------------SAANSTVCSVVPGAIFGV 86 (142)
T ss_dssp EEEEEECTTCEEECTT-SBCCEEEEEEESCEEEECC------------------------------CEEEEECTTCEECG
T ss_pred hcEEecCCCCEEEeCC-CCCCcEEEEEeCEEEEEEECCCCC---------------------ceEeeeEEEecCCCEech
Confidence 5667777887664443 457889999999999887777652 122 367899998853
No 345
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=47.59 E-value=14 Score=30.87 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.3
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
....+.+|..+...--.++.+++|++|.+.+.... ...+.+||+|
T Consensus 35 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-----~~~~~~G~~~ 79 (138)
T 1vp6_A 35 RARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-----PVELGPGAFF 79 (138)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-----CEEECTTCEE
T ss_pred cEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-----cceECCCCEe
Confidence 34578898887665566888999999999775422 2456777765
No 346
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=47.46 E-value=48 Score=29.77 Aligned_cols=118 Identities=9% Similarity=0.010 Sum_probs=75.2
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE---
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV--- 452 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV--- 452 (540)
+....+.+|-+....= -.++.+.+|++|...+....+++. ......+.+||+|-.
T Consensus 22 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~G~~~~ 79 (216)
T 4ev0_A 22 FQRRLYPQGKPIFYQG-DLGQALYLVASGKVRLFRTHLGGQ---------------------ERTLALLGPGELFGEMSL 79 (216)
T ss_dssp CEEEEECTTCEEECTT-CBCCEEEEEEESCEEEEEECSSSC---------------------EEEEEEECTTCEECHHHH
T ss_pred heEEEeCCCCEEEeCC-CCCCEEEEEEeCEEEEEEECCCCC---------------------EEEEEEecCCCEEeehhh
Confidence 4566777777765443 357789999999999999888763 345578999999843
Q ss_pred --CCCCeEEEEecCCCCEEEEEEEecC------CCCc--------------------------------cccc---ccc-
Q 040805 453 --PAGHPVVTVASQNNNLEVVCFEINA------EGNI--------------------------------RFPL---AGR- 488 (540)
Q Consensus 453 --PaG~~h~~~n~~~e~l~~v~F~~~a------~~~~--------------------------------~~~L---AG~- 488 (540)
..-+++.+.+.. +..++.+.... .++. ..+| +..
T Consensus 80 ~~~~~~~~~~~a~~--~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~ 157 (216)
T 4ev0_A 80 LDEGERSASAVAVE--DTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAYALLKLLRQG 157 (216)
T ss_dssp HHCCBCSSEEEESS--SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCcceEEEEcC--CEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Confidence 122344556653 46666664322 0110 0000 000
Q ss_pred ccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 489 NKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 489 ~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
..+.-.++.+-+|..+|++++++.++++.
T Consensus 158 ~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 186 (216)
T 4ev0_A 158 LGPLFQIRHHELAALAGTSRETVSRVLHA 186 (216)
T ss_dssp CCSEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 12234578999999999999999988765
No 347
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=47.25 E-value=69 Score=28.77 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=75.2
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE---
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV--- 452 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV--- 452 (540)
+....+.+|-+....= -.++.+.+|++|...+....++|. ..+...+.+||++.+
T Consensus 26 ~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~~~~~~~G~~~~~g~~ 83 (220)
T 3dv8_A 26 LITQHVKKGTIIHNGN-MDCTGLLLVKSGQLRTYILSDEGR---------------------EITLYRLFDMDMCLLSAS 83 (220)
T ss_dssp CEEEEECTTCEEEEGG-GCCCEEEEEEESCEEEEEECTTSC---------------------EEEEEEECTTCEESGGGG
T ss_pred CceEEeCCCCEEECCC-CCcceEEEEEeceEEEEEECCCCC---------------------EEEEEecCCCCeeehhHH
Confidence 3567778888765543 457789999999999999988763 344567899999632
Q ss_pred ----CCCCeEEEEecCCCCEEEEEEEecC------CCCc--c---cccccc-----------------------------
Q 040805 453 ----PAGHPVVTVASQNNNLEVVCFEINA------EGNI--R---FPLAGR----------------------------- 488 (540)
Q Consensus 453 ----PaG~~h~~~n~~~e~l~~v~F~~~a------~~~~--~---~~LAG~----------------------------- 488 (540)
..-+++.+.+.. +..++.+.... .++. . ..++-+
T Consensus 84 ~~~~~~~~~~~~~a~~--~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~ 161 (220)
T 3dv8_A 84 CIMRSIQFEVTIEAEK--DTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEETS 161 (220)
T ss_dssp GGCTTCCCCCEEEESS--CEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCceEEEEee--eeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 223445556653 56666664322 1110 0 000000
Q ss_pred --ccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 489 --NKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 489 --~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
..+.-.++.+-+|..+|++++++.++++.
T Consensus 162 ~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 192 (220)
T 3dv8_A 162 IEGTNELKITHETIANHLGSHREVITRMLRY 192 (220)
T ss_dssp HHTSSEECCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCceecCCHHHHHHHhCCCHHHHHHHHHH
Confidence 01112578899999999999999988765
No 348
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=46.89 E-value=14 Score=30.90 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=32.6
Q ss_pred eeeeeC-CCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 182 GILIAN-PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~-Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
.+..+. +|..+...--.++.++||++|.+.+. .+++.. ..+.+||+|
T Consensus 40 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~--~~~g~~-~~l~~G~~f 87 (134)
T 2d93_A 40 IFEVVEQAGAIILEDGQELDSWYVILNGTVEIS--HPDGKV-ENLFMGNSF 87 (134)
T ss_dssp EEEEECSSSCEEECTTCEECEEEECCBSCEEEE--CSSSCE-EEECTTCEE
T ss_pred eEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEE--cCCCcE-EEecCCCcc
Confidence 344677 78775544445778999999999765 344444 668888876
No 349
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=46.54 E-value=51 Score=29.15 Aligned_cols=74 Identities=8% Similarity=-0.113 Sum_probs=49.3
Q ss_pred EEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE-EC--
Q 040805 377 SYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI-VP-- 453 (540)
Q Consensus 377 ~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v-VP-- 453 (540)
....+.+|.+....= -.++.+.+|++|..++....++|. ..+..-+.+||+|- +.
T Consensus 31 ~~~~~~~g~~l~~~G-~~~~~~y~i~~G~v~~~~~~~~G~---------------------e~~~~~~~~g~~~ge~~~~ 88 (194)
T 3dn7_A 31 QLKKVRKKETLLKTG-EICRINYFVVKGCLRLFFIDEKGI---------------------EQTTQFAIENWWLSDYMAF 88 (194)
T ss_dssp EEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTCEECCHHHH
T ss_pred EEEEEcCCCEEECCC-CeeeEEEEeecCeEEEEEECCCCC---------------------EEEEEEccCCcEEeehHHH
Confidence 456667777654332 346789999999999999888763 34446789999996 32
Q ss_pred -CC--CeEEEEecCCCCEEEEEEE
Q 040805 454 -AG--HPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 454 -aG--~~h~~~n~~~e~l~~v~F~ 474 (540)
.+ +++.+.+. ++..++.+.
T Consensus 89 ~~~~~~~~~~~a~--~~~~v~~i~ 110 (194)
T 3dn7_A 89 QKQQPADFYIQSV--ENCELLSIT 110 (194)
T ss_dssp HHTCBCSSEEEES--SCEEEEEEE
T ss_pred hcCCCCceEEEEE--CCEEEEEEe
Confidence 12 34455665 356666663
No 350
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=45.10 E-value=12 Score=31.17 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=33.3
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EE--eeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SY--NVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~--~l~~GDv~ 231 (540)
....+++|..+...--.++.++||++|.+.+. ..+++.+ .. .+.+||+|
T Consensus 30 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~f 82 (137)
T 1wgp_A 30 KPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFC 82 (137)
T ss_dssp BCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBS
T ss_pred eEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEe
Confidence 34467888776655556889999999999853 3444332 23 67888866
No 351
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=44.78 E-value=75 Score=28.79 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=73.7
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG 455 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG 455 (540)
+....+.+|.++...= -.++.+.+|++|..++. ..+++. ..+...+.+||+|- ..
T Consensus 23 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~-~~~~G~---------------------~~~~~~~~~G~~fG--~~ 77 (222)
T 1ft9_A 23 FRSKIHAKGSLVCTGE-GDENGVFVVVDGRLRVY-LVGEER---------------------EISLFYLTSGDMFC--MH 77 (222)
T ss_dssp CEEEEECTTCEEECTT-CCCCCEEEEEESEEEEE-EEETTE---------------------EEEEEEEETTCEEE--SC
T ss_pred CcEEEECCCCEEECCC-CCCCeEEEEEecEEEEE-ECCCCC---------------------EEEEEEcCCCCEec--CC
Confidence 5567788888764433 34677999999999994 666552 34457789999998 45
Q ss_pred CeEEEEecCCCCEEEEEEEecC------CCCc--------------------------------cccc---c---cc---
Q 040805 456 HPVVTVASQNNNLEVVCFEINA------EGNI--------------------------------RFPL---A---GR--- 488 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F~~~a------~~~~--------------------------------~~~L---A---G~--- 488 (540)
+++...+.. +..++.+.... .++. ..+| + |.
T Consensus 78 ~~~~~~A~~--~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~ 155 (222)
T 1ft9_A 78 SGCLVEATE--RTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQTQ 155 (222)
T ss_dssp SSCEEEESS--CEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCBCCCSCC-
T ss_pred CCEEEEEcc--ceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 566667753 56666663221 1110 0000 1 00
Q ss_pred --ccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 489 --NKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 489 --~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
..+.-.++.+-+|..+|++.+++.++++.
T Consensus 156 ~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~ 186 (222)
T 1ft9_A 156 GGVIVSVDFTVEEIANLIGSSRQTTSTALNS 186 (222)
T ss_dssp -CCCCEECCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcEEEeccCCHHHHHHHhCCcHHHHHHHHHH
Confidence 01334578999999999999999888764
No 352
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=44.61 E-value=12 Score=34.35 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=39.3
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce--EEeeCCCcEEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE--SYNVKRGDIIRV 233 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~--~~~l~~GDv~~i 233 (540)
.....+.+|..+...-..++.++||++|.+.+...++++.. ...+.+||+|-.
T Consensus 32 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 86 (227)
T 3dkw_A 32 SDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 86 (227)
T ss_dssp CEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred CEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 33457788887666556688999999999988877665442 457889998853
No 353
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=44.54 E-value=48 Score=30.23 Aligned_cols=75 Identities=9% Similarity=0.027 Sum_probs=50.6
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC--
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP-- 453 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP-- 453 (540)
+....+.+|-+....= -.++.+.+|++|...+....+++. ..+...+.+||+|-..
T Consensus 29 ~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~G~~~~ 86 (231)
T 3e97_A 29 VTERNFQPDELVVEQD-AEGEALHLVTTGVVRVSRVSLGGR---------------------ERVLGDIYAPGVVGETAV 86 (231)
T ss_dssp EEEEEECTTCBCCCTT-CTTTCEEEECSSEEEEEEECC--C---------------------EEEEEEEESSEEESTTTT
T ss_pred cEEEEECCCCEEEeCC-CCCCeEEEEEecEEEEEEECCCCc---------------------eEEEEecCCCCEEeeHHH
Confidence 5677788888765553 457789999999999998888763 3455788999998532
Q ss_pred ---CCCeEEEEecCCCCEEEEEEE
Q 040805 454 ---AGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 454 ---aG~~h~~~n~~~e~l~~v~F~ 474 (540)
.-+++.+.+.. +..++.+.
T Consensus 87 ~~~~~~~~~~~a~~--~~~v~~i~ 108 (231)
T 3e97_A 87 LAHQERSASVRALT--PVRTLMLH 108 (231)
T ss_dssp TCCCCCCEEEEESS--CEEEEEEC
T ss_pred hCCCCceEEEEECC--cEEEEEEe
Confidence 22345556653 56666663
No 354
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=43.90 E-value=54 Score=29.24 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=50.1
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|.+....= -.++.+.+|++|..++....+++. ..+...+.+||+|-...
T Consensus 19 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~g~~~G~~~~ 76 (210)
T 3ryp_A 19 CHIHKYPSKSTLIHQG-EKAETLYYIVKGSVAVLIKDEEGK---------------------EMILSYLNQGDFIGELGL 76 (210)
T ss_dssp SEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECTTCC---------------------EEEEEEEETTCEESCTTT
T ss_pred cEEEEeCCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCC---------------------EEEEEEcCCCCEeeeHHH
Confidence 3456677777765443 347789999999999998888763 34456789999985322
Q ss_pred -----CCeEEEEecCCCCEEEEEEE
Q 040805 455 -----GHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 -----G~~h~~~n~~~e~l~~v~F~ 474 (540)
-+++.+.+. ++..++.+.
T Consensus 77 ~~~~~~~~~~~~a~--~~~~v~~i~ 99 (210)
T 3ryp_A 77 FEEGQERSAWVRAK--TACEVAEIS 99 (210)
T ss_dssp TSTTCBCSSEEEES--SCEEEEEEE
T ss_pred hcCCCCceEEEEEC--CcEEEEEEc
Confidence 234455665 356666663
No 355
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=43.77 E-value=57 Score=30.27 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=52.2
Q ss_pred ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453 (540)
Q Consensus 374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP 453 (540)
..+....+.+|-++...= -.++.+.+|++|..++....++|. ..+...+.+||+|-..
T Consensus 41 ~~~~~~~~~~ge~i~~~G-~~~~~ly~v~~G~v~~~~~~~~G~---------------------~~~l~~~~~g~~~G~~ 98 (243)
T 3la7_A 41 FPPVVETFERNKTIFFPG-DPAERVYFLLKGAVKLSRVYEAGE---------------------EITVALLRENSVFGVL 98 (243)
T ss_dssp CCCEEEEECTTCEEECTT-SBCCEEEEEEESCEEEEEECTTCC---------------------EEEEEEECTTCEESCH
T ss_pred chheeEEECCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCC---------------------EEEEEEecCCCEEcch
Confidence 334477788888875544 456789999999999999988763 3455788999988432
Q ss_pred -------CCCeEEEEecCCCCEEEEEEE
Q 040805 454 -------AGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 454 -------aG~~h~~~n~~~e~l~~v~F~ 474 (540)
..+.....+. ++..++.+.
T Consensus 99 ~~~~~~~~~~~~~~~A~--~~~~v~~i~ 124 (243)
T 3la7_A 99 SLLTGNKSDRFYHAVAF--TPVELLSAP 124 (243)
T ss_dssp HHHSSCCSBCCEEEEES--SSEEEEEEE
T ss_pred HHhCCCCCcceEEEEEc--cceEEEEEc
Confidence 1122445555 356666663
No 356
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=43.77 E-value=27 Score=29.40 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=35.9
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY 450 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~ 450 (540)
+....+.+|-++...= -.++.+.+|++|...+....+++. ......+.+||+|
T Consensus 35 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~G~~~ 87 (154)
T 2z69_A 35 SDLVNLDKGAYVFRQG-EPAHAFYYLISGCVKIYRLTPEGQ---------------------EKILEVTNERNTF 87 (154)
T ss_dssp CEEEEECTTCEEECTT-SBCCEEEEEEESCEEEECCCC--------------------------CCEEECTTEEE
T ss_pred CcEEEecCCCEEecCC-CccceEEEEEeCEEEEEEECCCCC---------------------EEEEEEccCCCee
Confidence 5566777777765543 457779999999999987766552 2334578999987
No 357
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=43.57 E-value=77 Score=28.59 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=73.7
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG 455 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG 455 (540)
+....+.+|-+..-.= -.++.+.+|++|..++ ...+++. ..+...+.+||+|-.|
T Consensus 27 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~-~~~~~G~---------------------~~~~~~~~~G~~~G~~-- 81 (220)
T 2fmy_A 27 FREQRYSKKAILYTPN-TERNLVFLVKSGRVRV-YLAYEDK---------------------EFTLAILEAGDIFCTH-- 81 (220)
T ss_dssp SEEEEECTTCEEECTT-CSSCEEEEEEESEEEE-EEECSSC---------------------EEEEEEEETTCEEESC--
T ss_pred hheeEeCCCCEEECCC-CCCCeEEEEEecEEEE-EECCCCC---------------------EEEEEEcCCCCEeCCc--
Confidence 4567778888764433 3567899999999999 5666552 3445678999999773
Q ss_pred CeEEEEecCCCCEEEEEEEecC------CCCc--------------------------------cccc---c---cc---
Q 040805 456 HPVVTVASQNNNLEVVCFEINA------EGNI--------------------------------RFPL---A---GR--- 488 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F~~~a------~~~~--------------------------------~~~L---A---G~--- 488 (540)
+++.+.+.. +..++.+.... .++. ..+| + |.
T Consensus 82 ~~~~~~A~~--~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~ 159 (220)
T 2fmy_A 82 TRAFIQAME--DTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVP 159 (220)
T ss_dssp SSSEEEESS--SEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCEEET
T ss_pred cceEEEEcC--cEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 445556653 56666664321 1110 0000 0 00
Q ss_pred --ccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 489 --NKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 489 --~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
..+.-.++.+-+|..+|++.+++.++++.
T Consensus 160 ~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 190 (220)
T 2fmy_A 160 QGIKLELGLNTEEIALMLGTTRQTVSVLLND 190 (220)
T ss_dssp TEEEEECSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcEEEeccCCHHHHHHHhCCcHHHHHHHHHH
Confidence 01334578999999999999999988764
No 358
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=43.24 E-value=53 Score=29.28 Aligned_cols=54 Identities=4% Similarity=0.030 Sum_probs=39.8
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
+....+.+|-++...= -.++.+.+|++|.+.+....+++. ......+.+||+|-
T Consensus 62 ~~~~~~~~ge~i~~~G-~~~~~ly~I~~G~v~v~~~~~~g~---------------------~~~~~~~~~G~~fG 115 (187)
T 3gyd_A 62 MQCYAAPRDCQLLTEG-DPGDYLLLILTGEVNVIKDIPNKG---------------------IQTIAKVGAGAIIG 115 (187)
T ss_dssp CEEEEECTTCEEECTT-SCCCEEEEEEEEEEEEEEEETTTE---------------------EEEEEEEETTCEES
T ss_pred cEEEEeCCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCC---------------------eEEEEEccCCCeee
Confidence 4566777777665443 457789999999999998888662 34456889999873
No 359
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=42.70 E-value=69 Score=29.05 Aligned_cols=74 Identities=8% Similarity=0.157 Sum_probs=49.4
Q ss_pred EEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE----
Q 040805 377 SYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV---- 452 (540)
Q Consensus 377 ~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV---- 452 (540)
....+.+|-+..-.- -.++.+.+|++|...+....+++. ..+...+.+||+|-.
T Consensus 30 ~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~G~~~G~~~~~ 87 (227)
T 3d0s_A 30 QPVDFPRGHTVFAEG-EPGDRLYIIISGKVKIGRRAPDGR---------------------ENLLTIMGPSDMFGELSIF 87 (227)
T ss_dssp CEEEECTTCEEECTT-CCCCEEEEEEESCEEEEEECTTSC---------------------EEEEEEECTTCEESCHHHH
T ss_pred eEEEeCCCCEEEcCC-CcCCEEEEEEeeEEEEEEECCCCc---------------------EEEEEEecCCCEEeeHHHc
Confidence 356677777664433 356779999999999998888763 344578899999842
Q ss_pred -CCCCeEEEEecCCCCEEEEEEE
Q 040805 453 -PAGHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 453 -PaG~~h~~~n~~~e~l~~v~F~ 474 (540)
..-+++...+.. +..++.+.
T Consensus 88 ~~~~~~~~~~A~~--~~~v~~i~ 108 (227)
T 3d0s_A 88 DPGPRTSSATTIT--EVRAVSMD 108 (227)
T ss_dssp SCSCCSSEEEESS--CEEEEEEE
T ss_pred CCCCceeEEEEcc--cEEEEEEe
Confidence 223444556653 45666553
No 360
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=42.02 E-value=34 Score=31.09 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=35.2
Q ss_pred eeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEE
Q 040805 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR 232 (540)
Q Consensus 181 l~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~ 232 (540)
+....+.||..+...--.++.++||++|.+.+.. ++.....+.+||+|-
T Consensus 98 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~~~~~~l~~G~~fG 146 (212)
T 3ukn_A 98 IKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DNTVLAILGKGDLIG 146 (212)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SSCEEEEECTTCEEE
T ss_pred hheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CCeEEEEecCCCCcC
Confidence 3445778998766555568899999999987653 334556788888874
No 361
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=41.79 E-value=60 Score=29.40 Aligned_cols=75 Identities=8% Similarity=-0.089 Sum_probs=49.8
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|-+....= -.++.+.+|++|...+....++|. ..+...+.+||+|-...
T Consensus 34 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~~~~~~~g~~~G~~~~ 91 (230)
T 3iwz_A 34 SHRRRYPTRTDVFRPG-DPAGTLYYVISGSVSIIAEEDDDR---------------------ELVLGYFGSGEFVGEMGL 91 (230)
T ss_dssp SEEEEECTTCEEECTT-SBCCEEEEEEESCEEEEEECTTSC---------------------EEEEEEECTTCEESCGGG
T ss_pred CeEEEeCCCCEEECCC-CCCCeEEEEEeeEEEEEEECCCCC---------------------EEEEEEecCCCEEEehhh
Confidence 3456677777664443 346789999999999999888763 34556789999985322
Q ss_pred ---C--CeEEEEecCCCCEEEEEEE
Q 040805 455 ---G--HPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 ---G--~~h~~~n~~~e~l~~v~F~ 474 (540)
+ +.+.+.+.. +..++.+.
T Consensus 92 ~~~~~~~~~~~~a~~--~~~v~~i~ 114 (230)
T 3iwz_A 92 FIESDTREVILRTRT--QCELAEIS 114 (230)
T ss_dssp TSCCSBCCSEEEESS--CEEEEEEE
T ss_pred hcCCCCceeEEEEcC--cEEEEEEe
Confidence 2 334455553 45665553
No 362
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.47 E-value=29 Score=31.91 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=41.7
Q ss_pred ccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEE----EEecCCceEEeeCCCcEE---EECCCCeEEEEeCC
Q 040805 177 EKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTIT----VIRENNRESYNVKRGDII---RVPSGNTFYVTNTD 245 (540)
Q Consensus 177 ~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig----~V~~~~~~~~~l~~GDv~---~iPaG~~h~~~N~g 245 (540)
..+|+++..+.|..+.+|.+. +-..=++|+.|.+... +...-+..-..+..||++ +-+.|-+||.+|-.
T Consensus 65 G~l~~GvT~~dP~~l~lP~~~~~L~~~~Wv~~~~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~G~l~~~iNg~ 141 (170)
T 2e63_A 65 GSIEIGVTALDPSVLDFPSSATGLKGGSWVVSGCSVLRDGRSVLEEYGQDLDQLGEGDRVGVERTVAGELRLWVNGR 141 (170)
T ss_dssp CCCEEEEESSCTTSCCCCSSGGGCCSSEEEESSSEEEESSCEEEESCSSCGGGCCSSCCEEEEECTTSCEEEEESSC
T ss_pred eeEEEEEEccChhhccCCCChhhCCCCeEEEeccccccCCcccchhccccccccCCCCEEEEEEcCCcEEEEEECCc
Confidence 368999999999999999985 2111123333322111 111112112356799976 56889999999953
No 363
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=40.63 E-value=62 Score=28.78 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=67.5
Q ss_pred EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE---C-CC
Q 040805 380 NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV---P-AG 455 (540)
Q Consensus 380 ~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV---P-aG 455 (540)
.+.+|-++...= -.++.+.+|++|...+....+++. ..+...+.+||+|-. . .-
T Consensus 3 ~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~---------------------~~~~~~~~~G~~~Ge~~~~~~~ 60 (195)
T 3b02_A 3 RFARKETIYLRG-EEARTLYRLEEGLVRVVELLPDGR---------------------LITLRHVLPGDYFGEEALEGKA 60 (195)
T ss_dssp EECTTCEEECTT-SBCCCEEEEEESCEEEEEECTTSC---------------------EEEEEEECTTCEECGGGGTCSB
T ss_pred EcCCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCC---------------------EEEEEEecCCCEechhhhCCCC
Confidence 344555443222 346679999999999998888763 344578899999843 1 11
Q ss_pred CeEEEEecCCCCEEEEEEEecCCCCc--------------------------------cccc---c---ccc---c-ccc
Q 040805 456 HPVVTVASQNNNLEVVCFEINAEGNI--------------------------------RFPL---A---GRN---K-IFK 493 (540)
Q Consensus 456 ~~h~~~n~~~e~l~~v~F~~~a~~~~--------------------------------~~~L---A---G~~---s-vl~ 493 (540)
+++...+. ++..++.+....=.+. ..+| + |.. . +.-
T Consensus 61 ~~~~~~A~--~~~~v~~i~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~ 138 (195)
T 3b02_A 61 YRYTAEAM--TEAVVQGLEPRAMDHEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYV 138 (195)
T ss_dssp CSSEEEES--SSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEE
T ss_pred ceeEEEEC--CcEEEEEEcHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeec
Confidence 33455554 3566666632220000 0001 0 000 0 233
Q ss_pred cCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 494 VMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 494 ~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
.++.+-+|..+|++.+++.++++.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~ 162 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLAD 162 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 578899999999999998888764
No 364
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=40.58 E-value=52 Score=29.79 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC-
Q 040805 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP- 453 (540)
Q Consensus 375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP- 453 (540)
.+....+.+|.++.-.- -.++.+.+|++|..++....++|. ..+...+.+||+|-..
T Consensus 21 ~~~~~~~~~g~~i~~~G-~~~~~~y~v~~G~v~~~~~~~~G~---------------------~~~~~~~~~G~~~G~~~ 78 (213)
T 1o5l_A 21 CGKVIVFRKGEIVKHQD-DPIEDVLILLEGTLKTEHVSENGK---------------------TLEIDEIKPVQIIASGF 78 (213)
T ss_dssp GSEEEEECTTCEEECTT-CBCCEEEEEEESCEEEEEECTTSC---------------------EEEEEEECSSEESSGGG
T ss_pred ccEEEEECCCCEEEcCC-CccceEEEEEeeEEEEEEECCCCC---------------------EEEEEEecCCCEeeeHH
Confidence 35567778888765443 356779999999999998888763 3445678999988321
Q ss_pred ----C-CCeEEEEecCCCCEEEEEEEecC------CCCcc--------------------------------ccc---cc
Q 040805 454 ----A-GHPVVTVASQNNNLEVVCFEINA------EGNIR--------------------------------FPL---AG 487 (540)
Q Consensus 454 ----a-G~~h~~~n~~~e~l~~v~F~~~a------~~~~~--------------------------------~~L---AG 487 (540)
. .+.+.+.+.. +..++.+.... .++.. .+| +.
T Consensus 79 ~~~~~~~~~~~~~A~~--~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~~~~ 156 (213)
T 1o5l_A 79 IFSSEPRFPVNVVAGE--NSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLREKLMNFLVRHMN 156 (213)
T ss_dssp TTSSSCBCSSEEEESS--SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HhcCCCCceEEEEEcc--ceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Confidence 1 2445556653 46666653221 01100 000 00
Q ss_pred cc-cccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEE
Q 040805 488 RN-KIFKVMESEAKELAFNTRADEVERVFGNQDQDWFF 524 (540)
Q Consensus 488 ~~-svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~ 524 (540)
.. .+.-.++.+-+|..+|++.+++.++++.=.+..++
T Consensus 157 ~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I 194 (213)
T 1o5l_A 157 EKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYI 194 (213)
T ss_dssp --------------------------------------
T ss_pred cCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeE
Confidence 00 12224677888999999999988888764444333
No 365
>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A
Probab=39.63 E-value=1.2e+02 Score=30.23 Aligned_cols=72 Identities=8% Similarity=0.106 Sum_probs=42.1
Q ss_pred eeeeeeCCCcc---ccccccCC--CeEEEEE---eeEEEEEEEe-cCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEE
Q 040805 181 LGILIANPQTF---VTPTHLDA--DAVFFVS---WGQGTITVIR-ENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLY 251 (540)
Q Consensus 181 l~~~~l~Pggl---~~Ph~~~A--~ei~yV~---~G~g~ig~V~-~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~ 251 (540)
+++-.+.|||. .+||-|+. ++++|.- +|.+ +.++. |+......|+-||++.+|.+.+|.-..+ +...
T Consensus 182 mg~evltpgg~WSSyPpHkHDrr~EeyyYF~l~~~gfv-~q~~g~p~Etrhi~V~n~daVlvP~wh~h~~~G~---~~Y~ 257 (282)
T 1xru_A 182 MGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACV-FHMMGQPQETRHIVMHNEQAVISPSWSIHSGVGT---KAYT 257 (282)
T ss_dssp EEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCE-EEEEEETTEEEEEEECSSEEEEECTTCEEEEEES---SCCE
T ss_pred EEEEEEeCCCCcCCCCCccCCCCceEEEEEEeCCCCEE-EEEeCCCCCeeEEEEECCCEEEeCCCCCCCCCCc---cceE
Confidence 56667889974 46776763 4444432 1333 33332 3333345779999999996577775433 3444
Q ss_pred EEEEe
Q 040805 252 IVKFI 256 (540)
Q Consensus 252 ~v~i~ 256 (540)
+|.+.
T Consensus 258 ylwvM 262 (282)
T 1xru_A 258 FIWGM 262 (282)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55444
No 366
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=38.98 E-value=48 Score=31.47 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=34.6
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
....+.+|..+...--.++.+++|++|.+.+.. ++.....+.+||+|
T Consensus 63 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g~~~~~l~~G~~f 109 (291)
T 2qcs_B 63 FPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNEWATSVGEGGSF 109 (291)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TTEEEEEECTTCEE
T ss_pred cEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CCeEEEEcCCCCcc
Confidence 344778888766555568899999999987765 33456677888877
No 367
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=38.92 E-value=50 Score=30.36 Aligned_cols=118 Identities=9% Similarity=0.056 Sum_probs=74.7
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC--
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP-- 453 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP-- 453 (540)
+....+.+|.+..-.- -.++.+.+|++|..++....++|. ..+...+.+||+|-..
T Consensus 43 ~~~~~~~~ge~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~l~~~~~G~~fG~~~~ 100 (232)
T 1zyb_A 43 LHFIKHKAGETIIKSG-NPCTQLCFLLKGEISIVTNAKENI---------------------YTVIEQIEAPYLIEPQSL 100 (232)
T ss_dssp CEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECGGGS---------------------CEEEEEEESSEEECGGGG
T ss_pred cEEEEECCCCEEECCC-CcccEEEEEEeeEEEEEEECCCCC---------------------EEEEEEccCCCeeeehHH
Confidence 5667778888765543 457789999999999988887653 3444678999988422
Q ss_pred --C-C-CeEEEEecCCCCEEEEEEEecC------CCCc--------------------------------cccc---ccc
Q 040805 454 --A-G-HPVVTVASQNNNLEVVCFEINA------EGNI--------------------------------RFPL---AGR 488 (540)
Q Consensus 454 --a-G-~~h~~~n~~~e~l~~v~F~~~a------~~~~--------------------------------~~~L---AG~ 488 (540)
. . +++.+.+.. +..++.+.... .++. ..+| +-.
T Consensus 101 ~~~~~~~~~~~~A~~--~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~ 178 (232)
T 1zyb_A 101 FGMNTNYASSYVAHT--EVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEK 178 (232)
T ss_dssp SSSCCBCSSEEEESS--CEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSS
T ss_pred hCCCCCCceEEEEcc--ceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Confidence 1 2 455666653 56666654221 1110 0000 000
Q ss_pred c--cccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 489 N--KIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 489 ~--svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
. .+.-.++.+-+|..+|++.+++.++++.
T Consensus 179 ~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~ 209 (232)
T 1zyb_A 179 PQGEKTFKVKMDDLARCLDDTRLNISKTLNE 209 (232)
T ss_dssp SSSCEEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCeEEecCCHHHHHHHhCCChhHHHHHHHH
Confidence 0 2334578999999999999999888764
No 368
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=38.91 E-value=46 Score=30.40 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=70.8
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC--
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP-- 453 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP-- 453 (540)
+....+.+|-+..-.- -.++.+.+|++|..++....+++. ..+...+.+||+|-..
T Consensus 33 ~~~~~~~~g~~i~~~g-~~~~~~y~v~~G~v~~~~~~~~g~---------------------~~~~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 33 IQPFPCKKASTVFSEG-DIPNNLFYLYEGKIKILREGVYGR---------------------FHISRIVKPGQFFGMRPY 90 (232)
T ss_dssp CEEEEECTTCEEECTT-CCCCEEEEEEESCEEEEC-----C---------------------CCEEEEECTTCEESHHHH
T ss_pred CeEEEECCCCEEEeCC-CCCCeEEEEEeCEEEEEEECCCCC---------------------EEEEEEeCCCCEeeeehh
Confidence 5667778888765443 356779999999999988877653 2344678999988422
Q ss_pred ---CCCeEEEEecCCCCEEEEEEEecC------CCCc--------------------------------cccc---c---
Q 040805 454 ---AGHPVVTVASQNNNLEVVCFEINA------EGNI--------------------------------RFPL---A--- 486 (540)
Q Consensus 454 ---aG~~h~~~n~~~e~l~~v~F~~~a------~~~~--------------------------------~~~L---A--- 486 (540)
.-+++.+.+.. +..++.+.... .++. ..+| +
T Consensus 91 ~~~~~~~~~~~A~~--~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~ 168 (232)
T 2gau_A 91 FAEETCSSTAIAVE--NSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLLILKENF 168 (232)
T ss_dssp HHTSCCSSEEEESS--CEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hCCCCcceEEEEec--ceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 22445566653 46666664221 0110 0011 0
Q ss_pred c----cccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 487 G----RNKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 487 G----~~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
| ...+.-.++.+-+|..+|++.+++.++++.
T Consensus 169 ~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 203 (232)
T 2gau_A 169 GFENDGATLSIYLSREELATLSNMTVSNAIRTLST 203 (232)
T ss_dssp CBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHH
Confidence 0 011234578999999999999999888764
No 369
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=37.13 E-value=69 Score=28.56 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=70.1
Q ss_pred EEEEcCCCcccccccCCC--cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE---
Q 040805 378 YANISKGAMAAPFYNSRS--TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV--- 452 (540)
Q Consensus 378 ~~~L~pggm~~PH~h~~A--~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV--- 452 (540)
...+.+|-++...= -.+ +.+.+|++|..++....++|. ..+...+.+||+|-.
T Consensus 7 ~~~~~~g~~i~~~g-~~~~~~~~y~v~~G~v~~~~~~~~G~---------------------~~~~~~~~~g~~~G~~~l 64 (202)
T 2zcw_A 7 TVSFKAGDVILYPG-VPGPRDRAYRVLEGLVRLEAVDEEGN---------------------ALTLRLVRPGGFFGEEAL 64 (202)
T ss_dssp CEEECTTCEEECSB-SCCTTCCCEEEEESCEEEEEECTTSC---------------------EEEEEEECTTCEECTHHH
T ss_pred EEEECCCCEEECCC-CCCCCCeEEEEEeCEEEEEEECCCCc---------------------EEEEEEecCCCEeeehhc
Confidence 35566777654433 234 669999999999998888763 345578899998853
Q ss_pred -CCCCeEEEEecCCCCEEEEEEEecCCCCc--------------------------------cccc---c---cc----c
Q 040805 453 -PAGHPVVTVASQNNNLEVVCFEINAEGNI--------------------------------RFPL---A---GR----N 489 (540)
Q Consensus 453 -PaG~~h~~~n~~~e~l~~v~F~~~a~~~~--------------------------------~~~L---A---G~----~ 489 (540)
...+++...+.. +..++.+ ...=.+. ..+| + |. .
T Consensus 65 ~~~~~~~~~~A~~--~~~v~~i-~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~ 141 (202)
T 2zcw_A 65 FGQERIYFAEAAT--DVRLEPL-PENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALLELSETPLAHEEEG 141 (202)
T ss_dssp HTCCBCSEEEESS--CEEEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTEEEETT
T ss_pred CCCCcceEEEEcc--cEEEEEE-hHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCc
Confidence 223445556653 4555555 3220000 0000 0 00 0
Q ss_pred cccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 490 KIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 490 svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
.+.-.++.+-+|..+|++.+++.++++.
T Consensus 142 ~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 169 (202)
T 2zcw_A 142 KVVLKATHDELAAAVGSVRETVTKVIGE 169 (202)
T ss_dssp EEEEECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEccCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 1223478899999999999999888764
No 370
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=36.61 E-value=56 Score=31.88 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=37.7
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce-EEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE-SYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~~~l~~GDv~ 231 (540)
....+++|..+..-=-.++.+++|++|.+.+....+++.. ...+.+||+|
T Consensus 37 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~f 87 (333)
T 4ava_A 37 QPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIV 87 (333)
T ss_dssp EEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEE
T ss_pred eEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEe
Confidence 3456788877665555688899999999999887776543 4577888887
No 371
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13
Probab=36.18 E-value=70 Score=31.94 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=31.9
Q ss_pred eeeeeeCCCcc---ccccccC-CCeEEEEEe----eEEEEEEEe-cCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805 181 LGILIANPQTF---VTPTHLD-ADAVFFVSW----GQGTITVIR-ENNRESYNVKRGDIIRVPSGNTFYVTN 243 (540)
Q Consensus 181 l~~~~l~Pggl---~~Ph~~~-A~ei~yV~~----G~g~ig~V~-~~~~~~~~l~~GDv~~iPaG~~h~~~N 243 (540)
+++-.+.|||. .+||-|+ ..|.+|-.. |. .+.++. ++......|+-||+|.+|.|-.|--..
T Consensus 182 mg~evltpGg~WSSyPpHkHDrr~E~yyYF~l~p~~~-v~h~~g~pdEtrh~~V~n~daVlvP~wgyHp~~G 252 (289)
T 1ywk_A 182 MGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTR-IFHMMGKPDETKHLVMSNEQAAISPSWSIHSGVG 252 (289)
T ss_dssp EEEEEECTTCCCCC--------CEEEEEEESCCTTCC-EEEEESSTTSCEEEEECTTEEEEECTTSCCCEEE
T ss_pred EEEEEEeCCCCcCCCCCccCCCCCeeEEEEEeCCCCe-EEEECCCCCceEEEEEECCCEEEeCCCcccCCCC
Confidence 56667889974 4677676 334444322 22 222221 222233577999999999987775333
No 372
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=36.14 E-value=44 Score=34.41 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=39.3
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc----eEEeeCCCcEEEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR----ESYNVKRGDIIRV 233 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~----~~~~l~~GDv~~i 233 (540)
...+.+|..+...--.++.++||++|.+.+....+++. ....+.+||+|--
T Consensus 67 ~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe 121 (469)
T 1o7f_A 67 YENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE 121 (469)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECG
T ss_pred EEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcch
Confidence 34778888766555568899999999999888776653 4568899999854
No 373
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=35.94 E-value=40 Score=30.84 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=34.0
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
...+++|......-..++.+++|++|.+.+.. ++.....+.+||+|
T Consensus 32 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~~~~~~~g~~f 77 (246)
T 3of1_A 32 EKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNKVNSSGPGSSF 77 (246)
T ss_dssp EEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSCCEEECTTCEE
T ss_pred eEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEEEEecCCCCee
Confidence 44778888766555668899999999997653 33445678888887
No 374
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=35.34 E-value=80 Score=29.69 Aligned_cols=75 Identities=9% Similarity=-0.038 Sum_probs=50.1
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|.++...= -.++.+.||++|..++....+++. ..+...+.+||+|-...
T Consensus 69 ~~~~~~~~ge~i~~~G-~~~~~~y~I~~G~v~~~~~~~~G~---------------------e~~~~~~~~G~~~Ge~~~ 126 (260)
T 3kcc_A 69 CHIHKYPSKSTLIHQG-EKAETLYYIVKGSVAVLIKDEEGK---------------------EMILSYLNQGDFIGELGL 126 (260)
T ss_dssp SEEEEECTTCEEECTT-CBCCEEEEEEECEEEEEEECTTCC---------------------EEEEEEEETTCEESCTTT
T ss_pred CEEEEECCCCEEECCC-CcCCeEEEEEeCEEEEEEECCCCC---------------------EEEEEEcCCCCEEeehHH
Confidence 4566777777764443 346789999999999998888763 34557889999984332
Q ss_pred -----CCeEEEEecCCCCEEEEEEE
Q 040805 455 -----GHPVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 -----G~~h~~~n~~~e~l~~v~F~ 474 (540)
.+...+.+.. +..++.+.
T Consensus 127 ~~~~~~~~~~~~A~~--~~~l~~i~ 149 (260)
T 3kcc_A 127 FEEGQERSAWVRAKT--ACEVAEIS 149 (260)
T ss_dssp TSTTCBCCSEEEESS--CEEEEEEE
T ss_pred hCCCCCCceEEEECC--CeEEEEEc
Confidence 2344556653 46666653
No 375
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=33.95 E-value=43 Score=30.66 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=33.1
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
....+.+|......--.++.+++|++|.+.+... +......+.+||+|
T Consensus 149 ~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~--~~~~~~~l~~g~~f 196 (246)
T 3of1_A 149 DTKIYQPGETIIREGDQGENFYLIEYGAVDVSKK--GQGVINKLKDHDYF 196 (246)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEECEEEEEET--TTEEEEEEETTCEE
T ss_pred heEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEc--CCceEEEcCCCCcc
Confidence 3346677777655555688999999999876552 22255678888877
No 376
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=33.53 E-value=82 Score=26.89 Aligned_cols=53 Identities=8% Similarity=-0.019 Sum_probs=37.0
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI 451 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v 451 (540)
+....+.+|.++.-. .-.++.+.+|++|...+.. .+++. ......+.+||+|=
T Consensus 61 ~~~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~-~~~g~---------------------~~~~~~~~~G~~fG 113 (161)
T 3idb_B 61 MFEKLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYV-KCDGV---------------------GRCVGNYDNRGSFG 113 (161)
T ss_dssp CEEEEECTTCEEECT-TSCCCEEEEEEESEEEEEE-EETTE---------------------EEEEEEEESCCEEC
T ss_pred cceeEeCCCCEEEeC-CCCCcEEEEEEeCEEEEEE-cCCCC---------------------eEEEEEcCCCCEec
Confidence 445677777765443 2467789999999999988 55442 34446789999773
No 377
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=31.87 E-value=80 Score=26.51 Aligned_cols=25 Identities=4% Similarity=0.010 Sum_probs=18.0
Q ss_pred EEeeeeCCCcEEEECCCCeEEEEec
Q 040805 439 KVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 439 ~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
.+-..++.||.++++.....-+.-+
T Consensus 59 ~~p~~VkvGD~Vlf~ky~Gtevk~d 83 (100)
T 1we3_O 59 RVPLEVKEGDIVVFAKYGGTEIEID 83 (100)
T ss_dssp EECCSCCTTCEEEECTTCSEEEECS
T ss_pred EEeeecCCCCEEEECCCCCeEEEEC
Confidence 4445799999999999666554433
No 378
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=31.69 E-value=46 Score=34.58 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=21.3
Q ss_pred EeeeeCCCcEEEECCCCeEEEEecC
Q 040805 440 VSSRIRTDSAYIVPAGHPVVTVASQ 464 (540)
Q Consensus 440 ~~~~l~~GDV~vVPaG~~h~~~n~~ 464 (540)
++..-.+||+++||+|.||-..|..
T Consensus 293 ~~~~Q~~GeavfiPaG~~HQV~Nl~ 317 (392)
T 2ypd_A 293 CTLIQFLGDAIVLPAGALHQVQNFH 317 (392)
T ss_dssp EEEEEETTCEEEECTTCEEEEEESS
T ss_pred EEEEEcCCCEEEecCCCHHHHhccc
Confidence 4456689999999999999988874
No 379
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=31.62 E-value=1e+02 Score=28.36 Aligned_cols=75 Identities=4% Similarity=-0.071 Sum_probs=48.4
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|.++.-.- -.++.+.+|++|..++....++|. ..+...+ +||+|-...
T Consensus 18 ~~~~~~~~ge~i~~~G-~~~~~~y~I~~G~v~~~~~~~~G~---------------------e~~~~~~-~G~~~Ge~~~ 74 (238)
T 2bgc_A 18 IKPKQFHKKELIFNQW-DPQEYCIFLYDGITKLTSISENGT---------------------IMNLQYY-KGAFVIMSGF 74 (238)
T ss_dssp CCCEEEETTCEEECTT-CCCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEE-ESSEEEESBC
T ss_pred ceEEEECCCCEEEeCC-CCCceEEEEEecEEEEEEECCCCC---------------------EEEEEEc-CCCEecchhh
Confidence 3456677777764332 356789999999999998888763 3333557 899986543
Q ss_pred --CC----eEEEEecCCCCEEEEEEE
Q 040805 455 --GH----PVVTVASQNNNLEVVCFE 474 (540)
Q Consensus 455 --G~----~h~~~n~~~e~l~~v~F~ 474 (540)
+. ++...+.. ++..++.+.
T Consensus 75 ~~~~~~~~~~~~~a~~-~~~~v~~i~ 99 (238)
T 2bgc_A 75 IDTETSVGYYNLEVIS-EQATAYVIK 99 (238)
T ss_dssp TTTCCBSCCCEEEECS-SEEEEEEEE
T ss_pred hcCCCcCcceeEEEEE-cceEEEEEe
Confidence 22 34445543 456666664
No 380
>2rqx_A PMRD, polymyxin B resistance protein; signaling protein; NMR {Klebsiella pneumoniae}
Probab=31.21 E-value=42 Score=27.28 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805 198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254 (540)
Q Consensus 198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~ 254 (540)
.++..+.|++|.+ +-++..-..-++.|++||++. |=--+.|..|...+..+.|+.
T Consensus 13 k~~~~~lvL~gGa-LkMIAEv~s~~~~~k~GDlLs-PL~dA~YCiNrn~~~tvKii~ 67 (89)
T 2rqx_A 13 SASLCRVVLQSGA-LEMIAEIEACRLRLREGDKLT-PLADARYCLNNNPTQTLKIRN 67 (89)
T ss_dssp SSSCEEEEEEETT-EEEEEEEECSCCCCCTTCEEE-ECSSSCEEETTCTTSEEEEEE
T ss_pred ccCeEEEEEeCch-HHHHHHHhhcccccccccccc-cchhhhhhhcCCCCceEEEEe
Confidence 4666777887754 334332222257899999875 555677888987666777664
No 381
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=28.37 E-value=2.2e+02 Score=24.51 Aligned_cols=71 Identities=11% Similarity=-0.021 Sum_probs=48.2
Q ss_pred CCcccccccCCCcEE--EEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805 384 GAMAAPFYNSRSTKV--AVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461 (540)
Q Consensus 384 ggm~~PH~h~~A~ei--~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~ 461 (540)
-+++.-| |+.+..| +-|++|+..+.+....+.. ...-.+ -+.+|+..+||+...|.+.
T Consensus 26 ~~l~~~H-nTK~GtWgkL~Vl~G~Lkf~~~~e~~~~----------------~~~~~~---~~~~~~~~~i~Pq~wHrVe 85 (119)
T 3dl3_A 26 EALLTHH-NTAVDVFGQICVMEGVVTYYGFANSEAT----------------EPEIKV---VINAGQFATSPPQYWHRIE 85 (119)
T ss_dssp HHHHSSB-CCCTTEEEEEEEEESEEEEEEESSTTCC----------------SCSEEE---EEETTEEEEECTTCEEEEE
T ss_pred HHHHhcc-CCCCcEEEEEEEEEeEEEEEEEcCCCCC----------------cccEEE---EeCCCCCceeCCCceEEEE
Confidence 3455666 5777664 6789999999887765420 000022 3679999999999999988
Q ss_pred ecCCCCEEE-EEEEec
Q 040805 462 ASQNNNLEV-VCFEIN 476 (540)
Q Consensus 462 n~~~e~l~~-v~F~~~ 476 (540)
.+ +++.+ |.|...
T Consensus 86 ~s--dD~~f~leFyc~ 99 (119)
T 3dl3_A 86 LS--DDAQFNINFWSD 99 (119)
T ss_dssp EC--TTCEEEEEEEEC
T ss_pred EC--CCeEEEEEEEEC
Confidence 55 35666 667444
No 382
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=28.29 E-value=7.4 Score=32.69 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEEC
Q 040805 199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVP 234 (540)
Q Consensus 199 A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iP 234 (540)
+-.-.||+.|+. .|+++-++.....+.+||.++|=
T Consensus 28 ~RfeTYvI~Ger-SG~I~lNGAAArl~~~GD~vII~ 62 (97)
T 1uhe_A 28 ERFSTYVILGKK-RGEICVNGAAARKVAIGDVVIIL 62 (97)
T ss_dssp CEEEEECEEECS-TTCEEEEGGGGGGCCTTCEEEEE
T ss_pred ceEEEEEEeecc-CCeEEEchHHHccCCCCCEEEEE
Confidence 334689999987 77777788888889999999883
No 383
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=27.79 E-value=76 Score=30.27 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=33.2
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
..+.+|..+.-.--.++.+++|++|.+.+.. ++.....+.+||+|
T Consensus 65 ~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~g~~~~~~~~G~~f 109 (299)
T 3shr_A 65 VEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGVKLCTMGPGKVF 109 (299)
T ss_dssp EEECTTCEEECTTCBCCCEEEEEESCEEEEE---TTEEEEEECTTCEE
T ss_pred EEECCCCEEEcCCCcCceEEEEEEEEEEEEE---CCEEEEEeCCCCee
Confidence 4678888766555568899999999998732 34455677888876
No 384
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=27.43 E-value=65 Score=30.79 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=35.2
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEe-cCCc--eEEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIR-ENNR--ESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~-~~~~--~~~~l~~GDv~ 231 (540)
....+.+|..+...--.++.+++|++|.+.+.... +++. ....+.+||+|
T Consensus 181 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 181 EETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp EEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred cEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 34466777766555455788999999999888766 2332 34578888887
No 385
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=23.95 E-value=1.3e+02 Score=25.01 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=29.8
Q ss_pred CCCcccccccc-CCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC
Q 040805 187 NPQTFVTPTHL-DADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG 236 (540)
Q Consensus 187 ~Pggl~~Ph~~-~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG 236 (540)
..+|+++|--. .-+.. ..|.-|.|.. ...+......|+.||.+.++.|
T Consensus 21 T~gGI~LP~sakeKp~~G~VvAVG~G~~--~~~G~~~p~~VkvGD~Vlf~k~ 70 (97)
T 1pcq_O 21 SAGGIVLTGSAAAKSTRGEVLAVGNGRI--LENGEVKPLDVKVGDIVIFNDG 70 (97)
T ss_dssp TTTSSCCCCCCSCCCCEEEEEEECSEEC--TTSSSCEECSCCTTCEEEECCC
T ss_pred ccceEEeCcccccCCcccEEEEEcCcee--cCCCCEEecccCCCCEEEECCc
Confidence 46888899654 23333 3444466642 1222334568999999999993
No 386
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=23.91 E-value=74 Score=32.17 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc---eEEeeCCCcEE
Q 040805 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR---ESYNVKRGDII 231 (540)
Q Consensus 184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~---~~~~l~~GDv~ 231 (540)
..+.+|..+..---.++.+++|++|++.+....+++. ....+.+||+|
T Consensus 274 ~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f 324 (381)
T 4din_B 274 VQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF 324 (381)
T ss_dssp CCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred ccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence 3556666655444568899999999998887655432 35678999987
No 387
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=22.81 E-value=4.6e+02 Score=24.34 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred ecCCceEEEeccCcccc-ccccccccceeeeeeeCCCccccccccCCCeEEEEEeeE-EEEEEEecCCceEEeeCCCcEE
Q 040805 154 TSQHGRVAFLPKFTQRS-KLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ-GTITVIRENNRESYNVKRGDII 231 (540)
Q Consensus 154 ~~e~G~i~~l~~f~~~~-~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~-g~ig~V~~~~~~~~~l~~GDv~ 231 (540)
+|-+|..+.+-.+.... ..|. +|+.+.++.-.|- .-.++.-+.++.+++|. .++.. ++.....|.+++.+
T Consensus 25 kNGgG~TrEI~~~P~~~~~~F~----wRiSiA~V~~~g~-FS~FpG~dR~l~lL~G~gl~L~~---~g~~~~~L~~~~p~ 96 (193)
T 3esg_A 25 KNGGGSTEEITRDAGTGLEGFG----WRLSIADIGESGG-FSSFAGYQRVITVIQGAGMVLTV---DGEEQRGLLPLQPF 96 (193)
T ss_dssp TTSSEEEEEEEECCCBTTTBCS----EEEEEEEECSSEE-CCCCTTCEEEEEEEESSCEEEEE---TTSCCEEECBTCCE
T ss_pred cCCCeEEEEEEEcCCCcCCCce----EEEEEEEEcCCCC-CCCCCCceEEEEEEcCCcEEEEe---CCCccEecCCCCCE
Q ss_pred EECCCCeEEEEeCCCCccEEEEEEe
Q 040805 232 RVPSGNTFYVTNTDDDEKLYIVKFI 256 (540)
Q Consensus 232 ~iPaG~~h~~~N~g~~e~l~~v~i~ 256 (540)
.++-+......+.+ .+.+-+.+.
T Consensus 97 ~F~G~~~v~a~L~~--G~v~DfNlM 119 (193)
T 3esg_A 97 AFRGDSQVSCRLIT--GPIRDFNLI 119 (193)
T ss_dssp EEETTSCEEEEESS--SCEEEEEEE
T ss_pred EeCCCCeEEEEECC--CCEEEEEEE
No 388
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=20.39 E-value=1.3e+02 Score=30.90 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=32.2
Q ss_pred eeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC------Cc--eEEeeCCCcEE
Q 040805 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN------NR--ESYNVKRGDII 231 (540)
Q Consensus 182 ~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~------~~--~~~~l~~GDv~ 231 (540)
....+.+|..+..---.++.+++|++|.+.+....++ +. ....+.+||+|
T Consensus 291 ~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~f 348 (416)
T 3tnp_B 291 GTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYF 348 (416)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEE
T ss_pred eEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEe
Confidence 3446677776555445688999999999988765543 21 34567888876
No 389
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=20.30 E-value=1.5e+02 Score=30.45 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=33.4
Q ss_pred eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc--eEEeeCCCcEE
Q 040805 183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--ESYNVKRGDII 231 (540)
Q Consensus 183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--~~~~l~~GDv~ 231 (540)
...+++|..+.-.--..+.+++|++|.+.+.. ..++. ....+.+||+|
T Consensus 170 ~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~f 219 (416)
T 3tnp_B 170 EKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSF 219 (416)
T ss_dssp EEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEE
T ss_pred EEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCEE
Confidence 34678887766555568899999999998776 33332 24467777766
No 390
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=20.28 E-value=50 Score=29.87 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=69.9
Q ss_pred EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC-
Q 040805 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA- 454 (540)
Q Consensus 376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa- 454 (540)
+....+.+|-+....= -.++.+.+|++|...+....++|. ......+.+||+|-...
T Consensus 32 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~G~---------------------~~~~~~~~~g~~~G~~~~ 89 (227)
T 3dkw_A 32 SDLVNLDKGAYVFRQG-EPAHAFYYLISGCVKIYRLTPEGQ---------------------EKILEVTNERNTFAEAMM 89 (227)
T ss_dssp CEEEECCTTEEEECTT-SBCCEEEEEEESCEECCBCCGGGC---------------------CBCCCEECTTEEESCTTT
T ss_pred CEEEEECCCCEEEcCC-CccceEEEEEeCEEEEEEECCCCC---------------------EEEEEEcCCCCEeeeHHh
Confidence 4456666776654443 356779999999999887777552 22335688999885432
Q ss_pred --C---CeEEEEecCCCCEEEEEEEecC------CCCcc--------------------------------ccc---cc-
Q 040805 455 --G---HPVVTVASQNNNLEVVCFEINA------EGNIR--------------------------------FPL---AG- 487 (540)
Q Consensus 455 --G---~~h~~~n~~~e~l~~v~F~~~a------~~~~~--------------------------------~~L---AG- 487 (540)
+ +++.+.+.. +..++.+.... .++.. .+| +-
T Consensus 90 ~~~~~~~~~~~~a~~--~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~ 167 (227)
T 3dkw_A 90 FMDTPNYVATAQAVV--PSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAH 167 (227)
T ss_dssp TTTCSBCSSCEEESS--CCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCceEEEEcC--cEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 2 334455553 45555553221 11100 000 00
Q ss_pred ----cccccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805 488 ----RNKIFKVMESEAKELAFNTRADEVERVFGN 517 (540)
Q Consensus 488 ----~~svl~~~~~evla~AF~vs~e~v~kl~~~ 517 (540)
...+.-.++.+-+|..+|++.+++.++++.
T Consensus 168 ~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 201 (227)
T 3dkw_A 168 APGENCRVEIPVAKQLVAGHLSIQPETFSRIMHR 201 (227)
T ss_dssp SSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHH
Confidence 001333567899999999999999888764
No 391
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=20.25 E-value=1.8e+02 Score=24.14 Aligned_cols=25 Identities=4% Similarity=-0.121 Sum_probs=17.9
Q ss_pred EEeeeeCCCcEEEECCCCeEEEEec
Q 040805 439 KVSSRIRTDSAYIVPAGHPVVTVAS 463 (540)
Q Consensus 439 ~~~~~l~~GDV~vVPaG~~h~~~n~ 463 (540)
.+...++.||.+++|.....-+.-+
T Consensus 54 ~~p~~VkvGD~Vl~~ky~Gtevk~d 78 (95)
T 3nx6_A 54 LHAPVVKVGDKVIYGQYAGSSYKSE 78 (95)
T ss_dssp EECCSCCTTCEEEECTTCSEEEEET
T ss_pred EEccccCCCCEEEECCcCCeEEEEC
Confidence 3445799999999999666554433
Done!