BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040809
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82530|PSA4_PETHY Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2
SV=1
Length = 249
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 82/105 (78%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MG-------CLVGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G LVGE VTSKLLQTST
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTST 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
S+EKMYKIDDHVACAVAGIMSDANILINTARVQA+RY ++YQEP+
Sbjct: 61 SSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPM 105
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147
QDYKDD+TR+EAVQLALKVL KTMDSTSLTSEKLELAEVF L +GKVKY+ CSPE L +
Sbjct: 177 QDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVF-LSNGKVKYQACSPEKLNSM 235
Query: 148 LENFGVAQPASEVS 161
L G+ QP++E S
Sbjct: 236 LVKSGLTQPSAEES 249
>sp|O81148|PSA4_ARATH Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1
PE=1 SV=1
Length = 250
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 81/105 (77%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MG-------CLVGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L+GE VTSKLLQTST
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTST 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
SAEKMYKIDDHVACAVAGIMSDANILINTARVQA+RY + YQEP+
Sbjct: 61 SAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPM 105
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 61/74 (82%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147
QDYKDD TR+EAV+LALKVL KTMDSTSLTSEKLELAEV+L PS VKY + SPESLT L
Sbjct: 177 QDYKDDATREEAVELALKVLTKTMDSTSLTSEKLELAEVYLTPSKTVKYHVHSPESLTKL 236
Query: 148 LENFGVAQPASEVS 161
L GV QPA+E S
Sbjct: 237 LVKHGVTQPAAETS 250
>sp|P52427|PSA4_SPIOL Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2
SV=1
Length = 250
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 81/105 (77%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MG-------CLVGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L+GE VTSKLLQTST
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTST 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
S EKMYKIDDHVACAVAGIMSDANILINTARVQA+RY ++YQEP+
Sbjct: 61 STEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPM 105
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 64/74 (86%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147
QDYKDD+TR++AV+LALK L KTMDSTSLTSEKLELAEV+LLPSGKVKY++ SPESL L
Sbjct: 177 QDYKDDVTREDAVKLALKALSKTMDSTSLTSEKLELAEVYLLPSGKVKYQVHSPESLNRL 236
Query: 148 LENFGVAQPASEVS 161
L G+ QPA+E S
Sbjct: 237 LTESGLTQPAAETS 250
>sp|Q5VRG3|PSA4B_ORYSJ Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica
GN=Os06g0167600 PE=2 SV=1
Length = 250
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCL-------VGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L VGE VTSKLLQTS
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSR 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
SAEKMYKID H+ACAVAGIMSDANIL+NTAR+ A+RYA +YQEPI
Sbjct: 61 SAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPI 105
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP-SGKVKYRICSPESLTM 146
QDY+D +TR+EAV LALKVL KTMDSTSLT+EKLELAEVFL P +G+V+Y++CSPE++
Sbjct: 177 QDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGK 236
Query: 147 LLENFGVAQPASEV 160
LL G++QPA E
Sbjct: 237 LLAKAGLSQPAPEA 250
>sp|P0C8Y9|PSA4B_ORYSI Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica
GN=OsI_021067 PE=1 SV=1
Length = 250
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCL-------VGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L VGE VTSKLLQTS
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSR 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
SAEKMYKID H+ACAVAGIMSDANIL+NTAR+ A+RYA +YQEPI
Sbjct: 61 SAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPI 105
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP-SGKVKYRICSPESLTM 146
QDY+D +TR+EAV LALKVL KTMDSTSLT+EKLELAEVFL P +G+V+Y++CSPE++
Sbjct: 177 QDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGK 236
Query: 147 LLENFGVAQPASEV 160
LL G++QPA E
Sbjct: 237 LLAKAGLSQPAPEA 250
>sp|P0C1G8|PSA4A_ORYSJ Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica
GN=PAC1 PE=2 SV=1
Length = 250
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCL-------VGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L VGE VTSKLLQTS
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSR 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
SAEKMYKID H+ACAVAGIMSDANIL+NTAR+ A+RYA +YQEPI
Sbjct: 61 SAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPI 105
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP-SGKVKYRICSPESLTM 146
QDY+D MTR+EAV LALKVL KTMDSTSLT+EKLELAEVFL P +G+V+Y++CSPE++
Sbjct: 177 QDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGK 236
Query: 147 LLENFGVAQPASEV 160
LL G++QPA E
Sbjct: 237 LLAKAGLSQPAPEA 250
>sp|A2Y9X7|PSA4A_ORYSI Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica
GN=OsI_021120 PE=1 SV=2
Length = 250
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCL-------VGENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L VGE VTSKLLQTS
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSR 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
SAEKMYKID H+ACAVAGIMSDANIL+NTAR+ A+RYA +YQEPI
Sbjct: 61 SAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPI 105
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP-SGKVKYRICSPESLTM 146
QDY+D MTR+EAV LALKVL KTMDSTSLT+EKLELAEVFL P +G+V+Y++CSPE++
Sbjct: 177 QDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGK 236
Query: 147 LLENFGVAQPASEV 160
LL G++QPA E
Sbjct: 237 LLAKAGLSQPAPEA 250
>sp|P34119|PSA4_DICDI Proteasome subunit alpha type-4 OS=Dictyostelium discoideum
GN=psmA4 PE=2 SV=1
Length = 250
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 19/106 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDYM-------GCLVG-----------ENNVTSKLLQTST 42
M+RRYD++TT+FSPEGR+YQV+Y G VG E T+KLL +ST
Sbjct: 1 MARRYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSST 60
Query: 43 S-AEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
S +EKM+KID+HV CAVAGI SDANILIN AR+ ++R+ Y YQEP+
Sbjct: 61 SISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPM 106
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 89 DYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148
+YK D++ +EA+QLALKVL KTMD +++ SEKLE + F V Y I + L +
Sbjct: 180 NYKPDISLKEALQLALKVLTKTMDRSNINSEKLEFS-YFTKQGDNVVYHIFTAAELDAFI 238
Query: 149 E 149
+
Sbjct: 239 K 239
>sp|P23638|PSA3_YEAST Proteasome subunit alpha type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE9 PE=1 SV=1
Length = 258
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 65/104 (62%), Gaps = 18/104 (17%)
Query: 2 SRRYDRQTTVFSPEGRLYQVDYM-------GCLVG-----------ENNVTSKLLQTSTS 43
SRRYD +TT+FSPEGRLYQV+Y G +G E VTS LL+ TS
Sbjct: 3 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTS 62
Query: 44 AEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
EK+YK++D +A AVAG+ +DA ILINTAR+ A+ Y Y E I
Sbjct: 63 TEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDI 106
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 89 DYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPS-GKVKYRICSPESLTML 147
DYKDDM +A++LALK L KT DS++LT ++LE A + + G+V +I P+ + +
Sbjct: 179 DYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDI 238
Query: 148 LENFGVAQ 155
L G+ +
Sbjct: 239 LVKTGITK 246
>sp|Q9R1P0|PSA4_MOUSE Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1
Length = 261
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLV-------GENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L E KLL
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+EK+YK+++ +AC+VAGI SDAN+L N R+ A+RY YQEPI
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 88 QDYKD-DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTM 146
QDYK+ +MT + A+ LA+KVL KTMD + L++EK+E+A SGK R+ + +
Sbjct: 177 QDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA-TLTRESGKTVIRVLKQKEVEQ 235
Query: 147 LL 148
L+
Sbjct: 236 LI 237
>sp|P21670|PSA4_RAT Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1
SV=1
Length = 261
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLV-------GENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L E KLL
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+EK+YK+++ +AC+VAGI SDAN+L N R+ A+RY YQEPI
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 88 QDYKD-DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTM 146
QDYK+ +MT + A+ LA+KVL KTMD + L++EK+E+A +GK R+ + +
Sbjct: 177 QDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQ 235
Query: 147 LL 148
L+
Sbjct: 236 LI 237
>sp|P25789|PSA4_HUMAN Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1
Length = 261
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLV-------GENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L E KLL
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+EK+YK+++ +AC+VAGI SDAN+L N R+ A+RY YQEPI
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 88 QDYKD-DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTM 146
QDYK+ +MT + A+ LA+KVL KTMD + L++EK+E+A +GK R+ + +
Sbjct: 177 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQ 235
Query: 147 LL 148
L+
Sbjct: 236 LI 237
>sp|Q3ZCK9|PSA4_BOVIN Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1
Length = 261
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLV-------GENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L E KLL
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+EK+YK+++ +AC+VAGI SDAN+L N R+ A+RY YQEPI
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 88 QDYKD-DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTM 146
QDYK+ +MT + A+ LA+KVL KTMD + L++EK+E+A +GK R+ + +
Sbjct: 177 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQ 235
Query: 147 LL 148
L+
Sbjct: 236 LI 237
>sp|Q4R932|PSA4_MACFA Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4
PE=2 SV=1
Length = 261
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLV-------GENNVTSKLLQTST 42
MSRRYD +TT+FSPEGRLYQV+Y +G L E KLL
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+EK+YK+++ +AC+VAGI SDAN+L N R+ A+RY YQEPI
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPI 105
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 88 QDYKD-DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTM 146
QDYK+ +MT + A+ LA+KVL KTMD + L++EK+E+A +GK R+ + +
Sbjct: 177 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQ 235
Query: 147 LL 148
L+
Sbjct: 236 LI 237
>sp|Q09682|PSA3_SCHPO Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC13C5.01c PE=3
SV=1
Length = 248
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MG-------CLVGENNVTSKLLQTST 42
MSR YD +TT+FSPEGRLYQV+Y +G L E VTSKLL+
Sbjct: 1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
SAEK+Y I D++ CAVAG+ +DANILIN AR ++Y + E +
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEM 105
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126
Q+YKDD+ EA +A+K L KT+DS SLT EK+E A +
Sbjct: 177 QEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATI 215
>sp|P18053|PSA4_DROME Proteasome subunit alpha type-4 OS=Drosophila melanogaster
GN=Pros29 PE=1 SV=2
Length = 264
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 18/105 (17%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLV-------GENNVTSKLLQTST 42
M+RRYD +TT+FSPEGRLYQV+Y +G L E T+KLL ++
Sbjct: 1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAI 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+EK+Y+++D++ C+VAGI SDAN+L + R+ A+RY ++Y E I
Sbjct: 61 PSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVI 105
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 94 MTRQEAVQLALKVLRKTMDSTSLTSEKLELA 124
+T +A LA+KVL T+D+T LT EK+E+A
Sbjct: 187 LTLADAKDLAIKVLSMTLDTTKLTPEKVEMA 217
>sp|Q9N599|PSA4_CAEEL Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3
PE=3 SV=2
Length = 250
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 20/108 (18%)
Query: 1 MSRRYDRQTTVFSPEGRLYQVDY-----------MGCLVGENNVTS-------KLLQTST 42
M+RRYD +TT+FSPEGRLYQV+Y +G L E V + KLL S
Sbjct: 1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSV 60
Query: 43 SAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQE--PIQ 88
EK+Y++ D+++C VAGI +DANILIN R A Y +Y E P++
Sbjct: 61 MTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVE 108
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELA 124
Q+YK +EA QLA+KVL KT+D L SEK+E+A
Sbjct: 177 QEYKSP-NLEEAKQLAIKVLWKTLD-VKLASEKVEMA 211
>sp|Q8TYB7|PSA_METKA Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=psmA PE=3 SV=1
Length = 246
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDYM-----------------GCLVG-ENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y G ++G + VTSKL++ S EK
Sbjct: 10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPE-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+Y+ID H+ A AG+++DA +L+ AR++A+ Y Y Y EPI
Sbjct: 69 VYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPI 109
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126
++Y++DMT QEA++LA++ L + + T++ LE+A V
Sbjct: 180 EEYREDMTLQEAIELAVRALYEASREET-TADNLEIAVV 217
>sp|B6YSH9|PSA_THEON Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=psmA PE=3 SV=1
Length = 260
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y +G L E +TSKL++ S S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPS-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+A A +GI++DA +L++ AR++A+ Y Y EP+
Sbjct: 69 IFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPV 109
>sp|C6A459|PSA_THESM Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=psmA PE=3 SV=1
Length = 260
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGC-----LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV Y + C L E VTSKL++ S EK
Sbjct: 10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPE-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+A A +GI++DA +L++ AR++A+ Y Y EP+
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147
+ Y+D+MT +EA++LA+ L K M+ S S EV ++ + K++ +PE +
Sbjct: 179 EKYRDEMTLEEAIKLAVLALSKIMEEPSPES-----IEVAVISVKEKKFKKITPEEVAKC 233
Query: 148 LEN 150
LE
Sbjct: 234 LEE 236
>sp|C5A2C2|PSA_THEGJ Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1
Length = 260
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y +G L E +TS+L++ S S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPS-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+A A +GI++DA +L++ AR++A+ Y Y EP+
Sbjct: 69 IFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPV 109
>sp|Q8U0L6|PSA_PYRFU Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmA PE=3 SV=1
Length = 260
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 19/100 (19%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGCLVGEN-------NVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y +G GE +TS+L++ S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPD-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEP 86
+++IDDH+A A +GI++DA +L+N AR++A+ Y Y EP
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEP 108
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELA 124
+ Y+DDM ++A++LAL L KTM++ S ++ +E+A
Sbjct: 179 EKYRDDMNLEDAIKLALMALAKTMENPS--ADNIEVA 213
>sp|O24733|PSA_THEK1 Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA
PE=3 SV=1
Length = 260
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y +G L E +TSKL++ S S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
++ IDDH+A A +GI++DA +L++ AR++A+ Y Y EP+
Sbjct: 69 IFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126
+ Y+DD+ + +A++LA+ L KT++ T+E +E+A +
Sbjct: 179 EHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215
>sp|Q5JIU9|PSA_PYRKO Proteasome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmA PE=3 SV=1
Length = 260
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y +G L E +TSKL++ S S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
++ IDDH+A A +GI++DA +L++ AR++A+ Y Y EP+
Sbjct: 69 IFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126
+ Y+DD+ + +A++LA+ L KT++ T+E +E+A +
Sbjct: 179 EHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215
>sp|Q60177|PSA_METJA Proteasome subunit alpha OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmA PE=1 SV=1
Length = 261
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGCLVG-----ENNVTSKLLQTSTSAEK 46
YDR TVFSPEGRLYQV+Y + C G + +TSKL++ S EK
Sbjct: 9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEK 67
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDHVA A +G+++DA +LI+ AR++A+ Y Y E I
Sbjct: 68 IFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEI 108
>sp|O29760|PSA_ARCFU Proteasome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmA PE=1 SV=1
Length = 246
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGC-----LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y + C L+ + V SKLL+ T EK
Sbjct: 8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADT-IEK 66
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+YKID+H+ A +G+++DA +LI+ AR++A+ Y EPI
Sbjct: 67 IYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPI 107
>sp|Q975G5|PSA_SULTO Proteasome subunit alpha OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=psmA PE=3 SV=2
Length = 242
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 20/105 (19%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR T+FSP+G LYQVDY +G L+GE ++LL S EK
Sbjct: 10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVD-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQ-DY 90
++ +DDHV C+ AG+ SD ILI+ AR QA ++ Y EPI DY
Sbjct: 69 VFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDY 113
>sp|O81149|PSA5A_ARATH Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1
PE=1 SV=1
Length = 237
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 22/129 (17%)
Query: 5 YDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAEK 46
YDR FSPEGRL+QV+Y +G L E +TS LL+ S S EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPS-SVEK 66
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQDYKDDMTRQEAVQLALKV 106
+ +IDDH+ CA++G+++DA L+ ARV+ + + ++Y EP+ + T Q LAL+
Sbjct: 67 IMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM---TVESTTQALCDLALRF 123
Query: 107 LRKTMDSTS 115
+S S
Sbjct: 124 GEGEEESMS 132
>sp|Q42134|PSA5B_ARATH Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2
PE=1 SV=2
Length = 237
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAEK 46
YDR FSPEGRL+QV+Y +G L E +TS LL+ S S EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPS-SVEK 66
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+ +IDDH+ CA++G+++DA L+ ARV+ + + ++Y EP+
Sbjct: 67 IMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 107
>sp|Q9V122|PSA_PYRAB Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmA PE=3 SV=1
Length = 260
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 19/100 (19%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGCLVG-----ENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y + C G E +TS+L++ S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPE-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEP 86
+++IDDH+A A +GI++DA +L+N AR++A+ + Y EP
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEP 108
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 90 YKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148
Y+DDMT EA++LA+ L KTM+ S +E +E+A ++ K+R S E + L
Sbjct: 181 YRDDMTLDEAIKLAIFALAKTMEKPS--AENIEVA---VITVKDKKFRKLSKEEIEKFL 234
>sp|O59219|PSA_PYRHO Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmA PE=3 SV=1
Length = 260
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 19/100 (19%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGC-----LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y + C L E +TS+L++ S EK
Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPE-SYEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEP 86
+++IDDH+A A +GI++DA +L+N AR++A+ + Y EP
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEP 108
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELA 124
+ YKDDM+ +EA++LA+ L KTM+ S +E +E+A
Sbjct: 179 EKYKDDMSLEEAIKLAIFALAKTMEKPS--AENIEVA 213
>sp|A6URN9|PSA_METVS Proteasome subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1
Length = 259
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGCLVG-----ENNVTSKLLQTSTSAEK 46
YDR T+FSPEGRLYQV+Y + C G + +TSKL+ S S EK
Sbjct: 10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+ A +G+++DA +LI+ ARV+A+ +Y E I
Sbjct: 69 IFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAI 109
>sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica
GN=PAE1 PE=2 SV=1
Length = 237
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 22/119 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAEK 46
YDR FSPEGRL+QV+Y +G L E VTS LL+ S S EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS-SVEK 66
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQDYKDDMTRQEAVQLALK 105
+ +ID+H+ CA++G+++DA L+ ARV+ + + ++Y EP+ + T Q LAL+
Sbjct: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM---TVESTTQAICDLALR 122
>sp|Q9Z2U1|PSA5_MOUSE Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1
Length = 241
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 19/100 (19%)
Query: 4 RYDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAE 45
YDR FSPEGRL+QV+Y +G CL E +TS L++ S S E
Sbjct: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIE 65
Query: 46 KMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQE 85
K+ +ID H+ CA++G+++DA LI+ ARV+ + + + Y E
Sbjct: 66 KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNE 105
>sp|P28066|PSA5_HUMAN Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3
Length = 241
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 19/100 (19%)
Query: 4 RYDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAE 45
YDR FSPEGRL+QV+Y +G CL E +TS L++ S S E
Sbjct: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIE 65
Query: 46 KMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQE 85
K+ +ID H+ CA++G+++DA LI+ ARV+ + + + Y E
Sbjct: 66 KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNE 105
>sp|Q5E987|PSA5_BOVIN Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1
Length = 241
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 19/100 (19%)
Query: 4 RYDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAE 45
YDR FSPEGRL+QV+Y +G CL E +TS L++ S S E
Sbjct: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIE 65
Query: 46 KMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQE 85
K+ +ID H+ CA++G+++DA LI+ ARV+ + + + Y E
Sbjct: 66 KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNE 105
>sp|P34064|PSA5_RAT Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2
SV=1
Length = 241
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 19/100 (19%)
Query: 4 RYDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAE 45
YDR FSPEGRL+QV+Y +G CL E +TS L++ S S E
Sbjct: 7 EYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIE 65
Query: 46 KMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQE 85
K+ +ID H+ CA++G+++DA LI+ ARV+ + + + Y E
Sbjct: 66 KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNE 105
>sp|Q6M0L9|PSA_METMP Proteasome subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmA PE=3 SV=1
Length = 259
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGCLVG-----ENNVTSKLLQTSTSAEK 46
YDR T+FSPEGRLYQV+Y + C G + +TSKL+ S S EK
Sbjct: 10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+ A +G+++DA +LI+ AR++A+ +Y E I
Sbjct: 69 IFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAI 109
>sp|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
Length = 237
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 22/119 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY------MG------------CLVGENNVTSKLLQTSTSAEK 46
YDR FSPEGRL+QV+Y +G L E +TS LL+ S S EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEK 66
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQDYKDDMTRQEAVQLALK 105
+ +ID+H+ CA++G+++DA L+ ARV+ + + ++Y EP+ + T Q LAL+
Sbjct: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM---TVESTTQALCDLALR 122
>sp|Q9UT97|PSA5_SCHPO Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup2 PE=1 SV=1
Length = 247
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 20/105 (19%)
Query: 1 MSR-RYDRQTTVFSPEGRLYQVDYM-----------------GCLVG-ENNVTSKLLQTS 41
M+R YDR FSPEGRL+QV+Y ++G E +TS L++ S
Sbjct: 3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME-S 61
Query: 42 TSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEP 86
S EK+++ID H+ CA++G+ +DA +I ARVQ + + + Y EP
Sbjct: 62 HSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEP 106
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 82 AYQEPIQDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126
A E ++++ DMT +EA L LKVLR+ M+ L S+ ++LA+V
Sbjct: 178 AKSELVKEFHKDMTLEEAEVLILKVLRQVMEE-KLDSKNVQLAKV 221
>sp|A4FZT6|PSA_METM5 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmA PE=3 SV=1
Length = 259
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGCLVG-----ENNVTSKLLQTSTSAEK 46
YDR T+FSPEGRLYQV+Y + C G + +TSKL+ S S EK
Sbjct: 10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+ A +G+++DA +LI+ AR++A+ +Y E I
Sbjct: 69 IFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAI 109
>sp|A6VIP0|PSA_METM7 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmA PE=3 SV=1
Length = 259
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGCLVG-----ENNVTSKLLQTSTSAEK 46
YDR T+FSPEGRLYQV+Y + C G + +TSKL+ S S EK
Sbjct: 10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+ A +G+++DA +LI+ AR++A+ +Y E I
Sbjct: 69 IFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAI 109
>sp|A9A846|PSA_METM6 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmA PE=3 SV=1
Length = 259
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGC-----LVGENNVTSKLLQTSTSAEK 46
YDR T+FSPEGRLYQV+Y + C L + +TSKL+ S S EK
Sbjct: 10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVS-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+ A +G+++DA +LI+ AR++A+ +Y E I
Sbjct: 69 IFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAI 109
>sp|A4YCU9|PSA_METS5 Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmA PE=3 SV=1
Length = 240
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 20/105 (19%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR T+FSP+G LYQVDY +G ++GE S+LL S EK
Sbjct: 10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVD-SIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQ-DY 90
++ +DDHV C+ AG+ SD ILI+ AR + ++ Y EPI DY
Sbjct: 69 VFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDY 113
>sp|Q4JB24|PSA_SULAC Proteasome subunit alpha OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmA PE=3 SV=1
Length = 242
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MGC-------LVGENNVTSKLLQTSTSAEK 46
YDR T+FSP+G LYQVDY +G L+ E ++LL EK
Sbjct: 10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVD-GIEK 68
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
++ +DDHV C AG+ SD ILI+ AR QA ++ Y EPI
Sbjct: 69 IFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPI 109
>sp|A5UJS2|PSA_METS3 Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1
Length = 250
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 17/101 (16%)
Query: 5 YDRQTTVFSPEGRLYQVDYM-----------------GCLVGENNVTSKLLQTSTSAEKM 47
YDR TVFSP+GRL+QV+Y G ++ + T+ L +TS EK+
Sbjct: 9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKI 68
Query: 48 YKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQ 88
+KID+H+ A +G+++DA L+ ARV+A+ Y EPI+
Sbjct: 69 FKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIR 109
>sp|Q469M6|PSA_METBF Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmA PE=3 SV=1
Length = 249
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MG-------CLVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRL+QV+Y +G L+ + +TS+L++ + S EK
Sbjct: 9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVE-AESIEK 67
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+++IDDH+ A +G+++DA L++ ARV+A+ +Y EPI
Sbjct: 68 IFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPI 108
>sp|Q8ZVM1|PSA_PYRAE Proteasome subunit alpha OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=psmA
PE=3 SV=1
Length = 243
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDYMG------------------CLVGENNVTSKLLQTSTSAEK 46
YDR T+FSPEG++YQV+Y G L E S L +S S EK
Sbjct: 9 YDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSS-SLEK 67
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
+Y ID+HVA + +G+++DA ILI+ AR A + + Y EPI
Sbjct: 68 IYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPI 108
>sp|A3CW55|PSA_METMJ Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1
Length = 240
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 19/101 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-------------MGC-----LVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRLYQV+Y + C L+ + VTS+LL+ S EK
Sbjct: 9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLE-PVSIEK 67
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87
++KID H+ A +G++ DA L++ ARV+++ +Y EPI
Sbjct: 68 IFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPI 108
>sp|A7I9C7|PSA_METB6 Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8)
GN=psmA PE=3 SV=1
Length = 240
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 19/102 (18%)
Query: 5 YDRQTTVFSPEGRLYQVDY-----------MG-------CLVGENNVTSKLLQTSTSAEK 46
YDR TVFSP+GRLYQV+Y +G L+ + V+SKLL++S S EK
Sbjct: 9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESS-SIEK 67
Query: 47 MYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPIQ 88
++KID+H+ A +G++ DA L++ AR++ + +Y E I+
Sbjct: 68 IFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIE 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,383,209
Number of Sequences: 539616
Number of extensions: 1714331
Number of successful extensions: 5706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5221
Number of HSP's gapped (non-prelim): 338
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)