Query 040809
Match_columns 161
No_of_seqs 126 out of 1129
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0176 20S proteasome, regula 100.0 1.1E-40 2.4E-45 249.2 9.6 143 3-151 6-241 (241)
2 PTZ00246 proteasome subunit al 100.0 2.2E-39 4.8E-44 257.1 17.0 158 1-158 1-248 (253)
3 KOG0178 20S proteasome, regula 100.0 1.6E-37 3.5E-42 234.1 12.1 158 1-159 1-248 (249)
4 cd03750 proteasome_alpha_type_ 100.0 5.9E-36 1.3E-40 234.0 16.1 139 5-149 1-227 (227)
5 PRK03996 proteasome subunit al 100.0 1.6E-34 3.5E-39 227.7 16.8 144 3-151 8-239 (241)
6 KOG0182 20S proteasome, regula 100.0 1.9E-34 4E-39 217.6 14.5 147 3-154 7-245 (246)
7 COG0638 PRE1 20S proteasome, a 100.0 3.2E-34 7E-39 225.5 15.6 148 3-154 1-235 (236)
8 cd03752 proteasome_alpha_type_ 100.0 2.9E-34 6.3E-39 222.5 13.3 124 3-126 1-213 (213)
9 KOG0181 20S proteasome, regula 100.0 6.9E-35 1.5E-39 217.6 8.6 144 1-151 2-233 (233)
10 TIGR03633 arc_protsome_A prote 100.0 1.9E-33 4.1E-38 219.4 14.5 135 4-143 2-224 (224)
11 cd03751 proteasome_alpha_type_ 100.0 6.7E-33 1.5E-37 214.9 12.7 123 3-126 2-212 (212)
12 KOG0183 20S proteasome, regula 100.0 1.2E-33 2.6E-38 213.6 7.3 146 3-156 2-238 (249)
13 cd03749 proteasome_alpha_type_ 100.0 8.4E-32 1.8E-36 208.5 13.4 120 5-127 1-211 (211)
14 cd03755 proteasome_alpha_type_ 100.0 8.9E-32 1.9E-36 207.7 13.0 118 5-126 1-207 (207)
15 KOG0184 20S proteasome, regula 100.0 4.6E-32 1E-36 205.9 11.0 149 1-153 1-240 (254)
16 cd03754 proteasome_alpha_type_ 100.0 2.1E-31 4.5E-36 206.9 12.9 121 4-126 1-215 (215)
17 cd03756 proteasome_alpha_arche 100.0 4.3E-31 9.4E-36 204.4 13.9 122 4-127 1-210 (211)
18 KOG0863 20S proteasome, regula 100.0 2.5E-31 5.3E-36 202.9 10.5 149 1-156 1-241 (264)
19 cd03753 proteasome_alpha_type_ 100.0 1.6E-30 3.4E-35 201.5 13.1 120 5-126 1-213 (213)
20 cd01911 proteasome_alpha prote 100.0 6.6E-30 1.4E-34 197.4 12.6 120 5-126 1-209 (209)
21 PTZ00488 Proteasome subunit be 99.9 9.9E-26 2.1E-30 178.4 17.7 141 11-156 35-243 (247)
22 TIGR03690 20S_bact_beta protea 99.9 1.7E-23 3.6E-28 163.0 15.9 132 17-153 4-216 (219)
23 cd03761 proteasome_beta_type_5 99.9 1.7E-23 3.8E-28 159.3 13.9 112 19-130 4-183 (188)
24 cd03759 proteasome_beta_type_3 99.9 7.1E-23 1.5E-27 156.7 14.5 115 16-130 4-188 (195)
25 cd03758 proteasome_beta_type_2 99.9 3.8E-22 8.2E-27 152.6 13.7 112 19-130 5-187 (193)
26 TIGR03691 20S_bact_alpha prote 99.9 4.9E-22 1.1E-26 155.7 14.0 115 25-148 38-228 (228)
27 cd03765 proteasome_beta_bacter 99.9 4.6E-22 1E-26 156.4 13.4 122 21-143 6-214 (236)
28 cd03757 proteasome_beta_type_1 99.9 5.4E-22 1.2E-26 153.8 12.9 115 16-130 9-201 (212)
29 cd03762 proteasome_beta_type_6 99.9 1.3E-21 2.9E-26 148.7 13.7 112 19-130 4-183 (188)
30 cd03763 proteasome_beta_type_7 99.9 1.4E-21 3.1E-26 148.8 13.4 112 19-130 4-182 (189)
31 cd03764 proteasome_beta_archea 99.9 6.5E-21 1.4E-25 144.9 14.9 117 18-139 3-187 (188)
32 cd03760 proteasome_beta_type_4 99.9 5.3E-21 1.1E-25 146.5 14.0 114 17-130 4-191 (197)
33 TIGR03634 arc_protsome_B prote 99.9 6.6E-21 1.4E-25 144.4 14.0 113 18-130 4-184 (185)
34 KOG0174 20S proteasome, regula 99.9 4.4E-21 9.6E-26 143.5 10.2 129 18-149 22-218 (224)
35 cd01912 proteasome_beta protea 99.8 5E-20 1.1E-24 139.8 13.9 113 18-130 3-184 (189)
36 cd01906 proteasome_protease_Hs 99.8 2.4E-18 5.1E-23 129.5 14.2 109 18-126 3-182 (182)
37 PF00227 Proteasome: Proteasom 99.8 2.5E-18 5.4E-23 130.2 12.2 110 17-126 6-190 (190)
38 KOG0175 20S proteasome, regula 99.8 7.2E-18 1.6E-22 131.0 12.0 128 25-157 82-276 (285)
39 KOG0179 20S proteasome, regula 99.8 1E-17 2.2E-22 126.8 11.8 115 16-130 30-224 (235)
40 KOG0180 20S proteasome, regula 99.7 6.6E-17 1.4E-21 119.2 9.3 105 26-130 21-193 (204)
41 cd01913 protease_HslV Protease 99.7 9.5E-17 2.1E-21 120.4 9.8 105 18-125 3-170 (171)
42 PRK05456 ATP-dependent proteas 99.7 1.1E-16 2.4E-21 120.4 8.4 105 18-125 4-171 (172)
43 TIGR03692 ATP_dep_HslV ATP-dep 99.7 6.1E-16 1.3E-20 116.0 9.0 105 18-125 3-170 (171)
44 KOG0173 20S proteasome, regula 99.6 1.8E-15 4E-20 117.3 11.2 121 10-130 31-219 (271)
45 KOG0177 20S proteasome, regula 99.6 1.1E-15 2.3E-20 114.2 9.3 105 26-130 14-187 (200)
46 PF10584 Proteasome_A_N: Prote 99.4 4.6E-14 9.9E-19 71.0 -0.1 20 5-24 1-20 (23)
47 cd01901 Ntn_hydrolase The Ntn 99.2 4.3E-10 9.4E-15 81.6 10.8 68 20-87 5-74 (164)
48 KOG0185 20S proteasome, regula 98.8 7.9E-08 1.7E-12 74.5 9.6 113 18-130 44-231 (256)
49 COG5405 HslV ATP-dependent pro 95.0 0.017 3.6E-07 43.0 2.1 55 26-80 17-72 (178)
50 COG3484 Predicted proteasome-t 80.1 3.4 7.5E-05 32.1 4.3 40 91-130 163-202 (255)
51 PF09894 DUF2121: Uncharacteri 70.7 28 0.0006 26.7 7.0 42 88-129 139-180 (194)
52 cd01785 PDZ_GEF_RA Ubiquitin-l 69.4 24 0.00051 23.3 5.5 55 92-152 21-75 (85)
53 COG3193 GlcG Uncharacterized p 58.9 41 0.00089 24.5 5.8 45 91-140 5-49 (141)
54 PRK09732 hypothetical protein; 58.2 44 0.00096 24.0 5.9 45 92-141 5-49 (134)
55 COG4728 Uncharacterized protei 49.8 19 0.00042 24.9 2.7 31 46-76 9-39 (124)
56 PF03928 DUF336: Domain of unk 48.2 36 0.00077 24.0 4.1 44 92-140 1-44 (132)
57 cd05177 PI3Kc_C2_gamma Phospho 47.8 30 0.00066 29.1 4.1 96 12-112 217-339 (354)
58 PF14804 Jag_N: Jag N-terminus 47.3 33 0.00071 20.5 3.2 33 93-132 4-36 (52)
59 COG4273 Uncharacterized conser 46.5 52 0.0011 23.6 4.5 47 55-110 47-127 (135)
60 cd05176 PI3Kc_C2_alpha Phospho 41.8 36 0.00078 28.6 3.7 96 12-112 216-338 (353)
61 COG1551 CsrA RNA-binding globa 41.5 74 0.0016 20.5 4.2 43 115-158 12-58 (73)
62 cd00895 PI3Kc_C2_beta Phosphoi 40.7 25 0.00054 29.6 2.5 25 88-112 315-339 (354)
63 PF09702 Cas_Csa5: CRISPR-asso 40.6 1.2E+02 0.0026 20.9 5.5 54 98-153 25-87 (105)
64 KOG4519 Phosphomevalonate kina 39.8 2.4E+02 0.0051 24.0 8.2 58 93-156 188-246 (459)
65 cd05781 DNA_polB_B3_exo DEDDy 39.3 12 0.00026 28.3 0.4 58 16-74 24-86 (188)
66 COG0334 GdhA Glutamate dehydro 36.6 1.4E+02 0.003 25.7 6.4 54 89-151 70-124 (411)
67 PF03646 FlaG: FlaG protein; 36.6 74 0.0016 21.5 4.1 57 94-153 34-98 (107)
68 COG4245 TerY Uncharacterized p 36.1 91 0.002 24.1 4.7 33 98-130 22-54 (207)
69 cd07422 MPP_ApaH Escherichia c 33.2 2.2E+02 0.0047 22.7 6.8 68 43-110 102-181 (257)
70 KOG0373 Serine/threonine speci 32.7 16 0.00035 29.0 0.2 29 49-78 154-182 (306)
71 PF02831 gpW: gpW; InterPro: 31.9 1.4E+02 0.003 18.9 4.8 51 94-152 1-51 (68)
72 PRK08868 flagellar protein Fla 31.4 1.1E+02 0.0023 22.5 4.3 34 118-153 99-132 (144)
73 PF03681 UPF0150: Uncharacteri 31.1 63 0.0014 18.3 2.6 19 94-112 29-47 (48)
74 PF07676 PD40: WD40-like Beta 30.9 25 0.00054 18.8 0.8 10 9-18 13-22 (39)
75 COG4079 Uncharacterized protei 30.9 1.9E+02 0.0041 23.3 5.9 57 88-147 140-196 (293)
76 PF00379 Chitin_bind_4: Insect 30.8 34 0.00075 20.0 1.4 14 11-24 33-46 (52)
77 cd05173 PI3Kc_IA_beta Phosphoi 30.7 52 0.0011 27.8 2.9 96 12-112 222-345 (362)
78 PF12566 DUF3748: Protein of u 30.5 32 0.0007 24.3 1.4 19 7-25 70-88 (122)
79 PRK02487 hypothetical protein; 30.2 2.2E+02 0.0048 20.8 6.2 34 90-127 19-52 (163)
80 KOG0306 WD40-repeat-containing 29.8 70 0.0015 29.7 3.7 38 11-49 515-575 (888)
81 PF10055 DUF2292: Uncharacteri 29.0 35 0.00076 19.1 1.1 15 9-23 18-32 (38)
82 PF01023 S_100: S-100/ICaBP ty 27.2 75 0.0016 18.1 2.4 36 96-150 1-36 (44)
83 COG3490 Uncharacterized protei 27.0 49 0.0011 27.4 2.1 16 9-24 118-134 (366)
84 PRK07738 flagellar protein Fla 26.8 1.3E+02 0.0028 21.2 3.9 34 118-153 74-107 (117)
85 PRK08452 flagellar protein Fla 26.4 2.4E+02 0.0052 20.0 6.4 34 118-153 81-114 (124)
86 PF02824 TGS: TGS domain; Int 26.2 32 0.0007 20.8 0.8 15 10-24 2-16 (60)
87 PF07661 MORN_2: MORN repeat v 25.2 49 0.0011 15.1 1.2 14 9-22 5-18 (22)
88 PF09695 YtfJ_HI0045: Bacteria 25.0 1.8E+02 0.004 21.7 4.6 33 119-153 124-159 (160)
89 PF01191 RNA_pol_Rpb5_C: RNA p 24.3 1E+02 0.0022 19.9 2.8 19 135-153 11-29 (74)
90 TIGR03544 DivI1A_domain DivIVA 23.5 62 0.0013 17.3 1.5 19 136-154 15-33 (34)
91 PF14232 DUF4334: Domain of un 23.1 1.9E+02 0.0042 17.8 5.0 47 12-64 2-49 (59)
92 PRK09570 rpoH DNA-directed RNA 23.1 94 0.002 20.3 2.5 19 135-153 14-32 (79)
93 PF08838 DUF1811: Protein of u 22.5 22 0.00049 24.4 -0.5 33 2-34 45-87 (102)
94 PF07433 DUF1513: Protein of u 22.1 74 0.0016 26.3 2.3 15 10-24 56-71 (305)
95 COG1334 FlaG Uncharacterized f 22.0 1.3E+02 0.0029 21.3 3.3 33 118-152 77-109 (120)
96 PRK04081 hypothetical protein; 21.7 1.3E+02 0.0029 23.2 3.5 17 135-151 82-98 (207)
97 PF00319 SRF-TF: SRF-type tran 21.5 44 0.00096 19.9 0.7 13 9-21 37-49 (51)
98 PRK07105 pyridoxamine kinase; 20.7 98 0.0021 24.5 2.8 28 43-70 3-30 (284)
99 PRK05578 cytidine deaminase; V 20.6 3.2E+02 0.007 19.4 5.5 35 94-130 1-35 (131)
100 PF11773 PulG: Type II secreto 20.1 1.5E+02 0.0033 19.6 3.0 33 96-130 36-68 (82)
101 KOG1930 Focal adhesion protein 20.0 70 0.0015 27.7 1.8 40 90-129 215-258 (483)
No 1
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=249.20 Aligned_cols=143 Identities=40% Similarity=0.743 Sum_probs=136.0
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
.-||+.+++|||+||||||||| | ||+++||.+++|+.++ +++||++|++||+|++||+.+|
T Consensus 6 seydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~-sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPS-SVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCch-hhhhheehhhceeeeccccccc
Confidence 5799999999999999999999 6 9999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++++++++|.+|++|++.|+++|
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~ 164 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIR 164 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEE
Confidence 99999999999999999999999
Q ss_pred ------------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 040809 88 ------------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLE 149 (161)
Q Consensus 88 ------------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~ 149 (161)
+.|+++||++||+.+++..|+++++. +++.+|+++++|++++ .|++++++|+++++.
T Consensus 165 ~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt~e~----~f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 165 YKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVAVVTPEG----EFHIYTPEEVEQVIK 239 (241)
T ss_pred ecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH-hcCccceEEEEEcccC----ceEecCHHHHHHHHh
Confidence 25899999999999999999999985 8999999999999986 699999999999987
Q ss_pred Hh
Q 040809 150 NF 151 (161)
Q Consensus 150 ~~ 151 (161)
++
T Consensus 240 ~~ 241 (241)
T KOG0176|consen 240 RL 241 (241)
T ss_pred cC
Confidence 64
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.2e-39 Score=257.11 Aligned_cols=158 Identities=46% Similarity=0.711 Sum_probs=144.3
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|+.+||+++|+|||||||+||||| | |||+|+|.+++++++++..+|||+|++||+|++||+.
T Consensus 1 ~~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~ 80 (253)
T PTZ00246 1 MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLT 80 (253)
T ss_pred CCCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcH
Confidence 899999999999999999999999 5 8999999999999988778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
+|++.+++.+|.+++.|++.+++++
T Consensus 81 ~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~ 160 (253)
T PTZ00246 81 ADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWK 160 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecce
Confidence 9999999999999999999999876
Q ss_pred ----------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCC-ceeEEECCHHHHHHHHHH
Q 040809 88 ----------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSG-KVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ----------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g-~~~~~~l~~~ei~~~l~~ 150 (161)
++|+++|+++||++++++||+.+.+++..++++++|++|+++++. ...|++|+++||+++|++
T Consensus 161 ~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 161 ATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred EEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 368999999999999999999999998899999999999987410 115999999999999999
Q ss_pred hcccCCCC
Q 040809 151 FGVAQPAS 158 (161)
Q Consensus 151 ~~~~~~~~ 158 (161)
++++.+.+
T Consensus 241 ~~~~~~~~ 248 (253)
T PTZ00246 241 VTQEYAKE 248 (253)
T ss_pred Hhhhhhhh
Confidence 97766443
No 3
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=234.10 Aligned_cols=158 Identities=56% Similarity=0.819 Sum_probs=147.3
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|+++||..+|+|||+|||+||||| | |||+++|.+++|++.+.+.+||++|+|||+|+++|+.
T Consensus 1 msr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt 80 (249)
T KOG0178|consen 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLT 80 (249)
T ss_pred CCcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccc
Confidence 999999999999999999999999 7 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
+|+..|++++|..+|+|.++||++|
T Consensus 81 ~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWk 160 (249)
T KOG0178|consen 81 SDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWK 160 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccc
Confidence 9999999999999999999999998
Q ss_pred ----------------cCCCCC-CCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 ----------------QDYKDD-MTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ----------------~~y~~~-mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.|+++ ++++||+.+|++.|...++.++++.+.+|++.++++.+ ...++++.++||.++|.+
T Consensus 161 a~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~-k~v~~i~~~~ev~kll~k 239 (249)
T KOG0178|consen 161 ATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCN-KTVLKILKKDEVLKLLEK 239 (249)
T ss_pred eeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCC-ceEEEecCHHHHHHHHHH
Confidence 245655 45999999999999999999999999999999999875 336899999999999999
Q ss_pred hcccCCCCC
Q 040809 151 FGVAQPASE 159 (161)
Q Consensus 151 ~~~~~~~~~ 159 (161)
+...++++|
T Consensus 240 ~~~~~~~~~ 248 (249)
T KOG0178|consen 240 YHETQRQAE 248 (249)
T ss_pred hhhhhhhcc
Confidence 998888765
No 4
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-36 Score=234.03 Aligned_cols=139 Identities=29% Similarity=0.541 Sum_probs=128.6
Q ss_pred CCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHH
Q 040809 5 YDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDAN 66 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 66 (161)
||+++|+|||||||+||||| | |||+|+|.++++..+ ++.+||++|++||+|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~-~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDE-SSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCC-CCcceEEEEcCCEEEEEeEcHHhHH
Confidence 89999999999999999999 5 999999999777654 4889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc-----------------------------------------------------------
Q 040809 67 ILINTARVQARRYAYAYQEPI----------------------------------------------------------- 87 (161)
Q Consensus 67 ~l~~~~r~~~~~y~~~~~~~i----------------------------------------------------------- 87 (161)
.+++++|.+++.|++.+++++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G 159 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIG 159 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEC
Confidence 999999999999999999887
Q ss_pred -----------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 040809 88 -----------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLE 149 (161)
Q Consensus 88 -----------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~ 149 (161)
++|+++||++||++++++||+.+..| .+++.+++|++|++++ .|+.++++||+++|.
T Consensus 160 ~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~-~l~~~~iev~iv~~~~----~~~~~~~~ei~~~~~ 227 (227)
T cd03750 160 KNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEG-QMTEKNIEIGICGETK----GFRLLTPAEIKDYLA 227 (227)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEECCC----CEEECCHHHHHHHhC
Confidence 46899999999999999999999987 5799999999999863 599999999999873
No 5
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.6e-34 Score=227.71 Aligned_cols=144 Identities=44% Similarity=0.736 Sum_probs=133.4
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
.+||+++++|||||||+||||| | |||+|+|.++++... ++.+|||+|++|++|++||+.+|
T Consensus 8 ~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~-~~~~KI~~I~~~i~~~~sG~~~D 86 (241)
T PRK03996 8 MGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEP-SSIEKIFKIDDHIGAASAGLVAD 86 (241)
T ss_pred cccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCC-CccceEEEEcCCEEEEEcccHHH
Confidence 7999999999999999999999 5 999999999776654 48899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.+++++|.+++.|++.+++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a 166 (241)
T PRK03996 87 ARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATA 166 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 99999999999999999999887
Q ss_pred -------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 040809 88 -------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENF 151 (161)
Q Consensus 88 -------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~ 151 (161)
+.|+++|+++||++++++||..+.++ ..++++++|+||+++++ .|+.++++||+++++++
T Consensus 167 ~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~---~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 167 IGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETK---KFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCC---cEEECCHHHHHHHHHHh
Confidence 36899999999999999999999986 78999999999999864 59999999999999875
No 6
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=217.64 Aligned_cols=147 Identities=33% Similarity=0.628 Sum_probs=136.2
Q ss_pred CCCCCCCcccCCCCceeeEecc---------------e----EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM---------------G----CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMS 63 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya---------------G----Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~ 63 (161)
.+||+++|+|||+||||||||| | |++++|+.+.+|.+++ .+..+|+|+++|||+++|+.+
T Consensus 7 agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~-tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSS-TVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred CCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccc-cceeEEEeeccceEEEecCCc
Confidence 6899999999999999999999 3 8999999999999987 799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------------------------------------------------------
Q 040809 64 DANILINTARVQARRYAYAYQEPI-------------------------------------------------------- 87 (161)
Q Consensus 64 D~~~l~~~~r~~~~~y~~~~~~~i-------------------------------------------------------- 87 (161)
|++..++++|.+|.+++|+||.+|
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kA 165 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKA 165 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccccee
Confidence 999999999999999999999998
Q ss_pred ---------------cCCCCC--CCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 ---------------QDYKDD--MTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ---------------~~y~~~--mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
++||++ .|.+|++++|+.||..++.- +.+..++||++++++.+ .|+.|+.+||+++|+.
T Consensus 166 taaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~-Dfk~se~EVgvv~~~~p---~f~~Ls~~eie~hL~~ 241 (246)
T KOG0182|consen 166 TAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGI-DFKSSELEVGVVTVDNP---EFRILSAEEIEEHLQA 241 (246)
T ss_pred eecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhc-ccCCcceEEEEEEcCCc---ceeeccHHHHHHHHHH
Confidence 346766 77999999999999999975 57888999999999864 6999999999999999
Q ss_pred hccc
Q 040809 151 FGVA 154 (161)
Q Consensus 151 ~~~~ 154 (161)
+++.
T Consensus 242 IAEk 245 (246)
T KOG0182|consen 242 IAEK 245 (246)
T ss_pred hhhc
Confidence 9764
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=225.51 Aligned_cols=148 Identities=39% Similarity=0.693 Sum_probs=139.3
Q ss_pred CCCCCCCcccCCCCceeeEecc------------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM------------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMS 63 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya------------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~ 63 (161)
.+||+.+++|||+||++|+||| | |||+|||.++++++.++..+|||+|+|||+|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 4799999999999999999999 6 99999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------------------------------------------------------
Q 040809 64 DANILINTARVQARRYAYAYQEPI-------------------------------------------------------- 87 (161)
Q Consensus 64 D~~~l~~~~r~~~~~y~~~~~~~i-------------------------------------------------------- 87 (161)
|++.|++++|.+|+.|++.|+++|
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~ 160 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAI 160 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEE
Confidence 999999999999999999999998
Q ss_pred ------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhccc
Q 040809 88 ------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVA 154 (161)
Q Consensus 88 ------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~ 154 (161)
++|+++|++|||++++++||+++++||..++++++|++|+++. .|+.++.+++..++..+...
T Consensus 161 Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~----~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 161 GSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE----GFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred cCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC----CeEEcCHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999899999999999973 59999999999999887653
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-34 Score=222.49 Aligned_cols=124 Identities=73% Similarity=1.070 Sum_probs=118.4
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
++||+++|+|||||||+||||| | |||+|+|.+++++++++..+|||+|++||+|++||+.+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 5899999999999999999999 5 999999999999998878999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.+++++|.+++.|+++|+++|
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999988
Q ss_pred --------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 88 --------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 88 --------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii 126 (161)
+.|+++||++||++++++||+.+.+|+..+++++||++|
T Consensus 161 a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 368999999999999999999999998999999999985
No 9
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-35 Score=217.60 Aligned_cols=144 Identities=28% Similarity=0.509 Sum_probs=134.3
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|+.+|.+++|+|||.|+|.|+||| | |||++|+..++|.+.. ++.||++|.+||||++||+.
T Consensus 2 ~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~-sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 2 GDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEE-SVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhh-hhhhHhhccCCcceEEecCC
Confidence 346999999999999999999999 7 9999999999999865 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
||+|.+++..|..|++|...|+++|
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka 160 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA 160 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence 9999999999999999999999998
Q ss_pred ---------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 040809 88 ---------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENF 151 (161)
Q Consensus 88 ---------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~ 151 (161)
++|.++|.++++|+.|+..|++..+. .++++||||+++..+ .|++|+++||+.+|+.+
T Consensus 161 tA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~feg-e~~~~nieigv~~~~-----~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 161 TAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGEN-----GFRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcc-ccccCceEEEEecCC-----ceeecCHHHHHHHHhcC
Confidence 36789999999999999999999974 899999999999843 59999999999999764
No 10
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.9e-33 Score=219.36 Aligned_cols=135 Identities=44% Similarity=0.770 Sum_probs=124.5
Q ss_pred CCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHH
Q 040809 4 RYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 65 (161)
Q Consensus 4 ~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 65 (161)
+||+++|+|||+|||+||||| | |||+|+|.++++... +..+||++|+++++|++||+.+|+
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~-~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEP-SSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCC-CccceEEEECCCEEEEEeecHHhH
Confidence 799999999999999999999 5 899999998776554 588999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc----------------------------------------------------------
Q 040809 66 NILINTARVQARRYAYAYQEPI---------------------------------------------------------- 87 (161)
Q Consensus 66 ~~l~~~~r~~~~~y~~~~~~~i---------------------------------------------------------- 87 (161)
+.+.+++|.++..|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~ 160 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAI 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEE
Confidence 9999999999999999999877
Q ss_pred ------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHH
Q 040809 88 ------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPES 143 (161)
Q Consensus 88 ------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~e 143 (161)
+.|+++|+++||++++++||..+.+ +..++++++|++|+++++ .|++++++|
T Consensus 161 G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~---~~~~~~~~~ 224 (224)
T TIGR03633 161 GAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDK---KFRKLSVEE 224 (224)
T ss_pred CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCC---cEEECCCCC
Confidence 3689999999999999999999998 789999999999999865 599998875
No 11
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-33 Score=214.90 Aligned_cols=123 Identities=37% Similarity=0.571 Sum_probs=115.2
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
++||+++|+|||||||+||||| | |||+|+|.++.+...+ ..+|||+|++|++|++||+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~-~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPG-SNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcc-hhcceeEecCcEEEEEEEChHh
Confidence 6899999999999999999999 5 8999999998877765 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.+++++|.+++.|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEE
Confidence 99999999999999999999887
Q ss_pred -------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 88 -------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 88 -------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii 126 (161)
++|+++||++||+++++++|+.+++..+..+++|||+++
T Consensus 161 ~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 161 IGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 468999999999999999999999877799999999985
No 12
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=213.57 Aligned_cols=146 Identities=33% Similarity=0.573 Sum_probs=132.3
Q ss_pred CCCCCCCcccCCCCceeeEecc--------------e----EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM--------------G----CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya--------------G----Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
++||+.+|+|||||+||||||| | ||+.+|+...+|++.. ...||..+++|++|++||+.+|
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r-~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDER-TVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhh-hhhhheeecceeeEEecCCCcc
Confidence 5899999999999999999999 3 8999999999999865 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
+|.+++++|.+|+.|+++...|+
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~ 160 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKAN 160 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcc
Confidence 99999999999999999999998
Q ss_pred --------------cCCCCC--CCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 040809 88 --------------QDYKDD--MTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENF 151 (161)
Q Consensus 88 --------------~~y~~~--mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~ 151 (161)
+.|.+. .+..++++|++++|.++.+. ++.++|++|+++.+ .++.|+.++|..++..+
T Consensus 161 aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~----~~~~l~~~~I~~~v~~i 233 (249)
T KOG0183|consen 161 AIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRK----DLKMLESEEIDDIVKEI 233 (249)
T ss_pred ccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCC----ceeecCHHHHHHHHHHH
Confidence 235554 67899999999999999964 68899999999875 59999999999999998
Q ss_pred cccCC
Q 040809 152 GVAQP 156 (161)
Q Consensus 152 ~~~~~ 156 (161)
.++.+
T Consensus 234 e~E~e 238 (249)
T KOG0183|consen 234 EQEEE 238 (249)
T ss_pred HHHHH
Confidence 77743
No 13
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=8.4e-32 Score=208.52 Aligned_cols=120 Identities=36% Similarity=0.651 Sum_probs=110.9
Q ss_pred CCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHH
Q 040809 5 YDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDAN 66 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 66 (161)
||+++|+|||||||+||||| | |||+|+|.++++. +..+|||+|++||+|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~---~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS---SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC---CccccEEEeCCCEEEEEEeChHhHH
Confidence 89999999999999999999 5 8999999888753 3569999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc-----------------------------------------------------------
Q 040809 67 ILINTARVQARRYAYAYQEPI----------------------------------------------------------- 87 (161)
Q Consensus 67 ~l~~~~r~~~~~y~~~~~~~i----------------------------------------------------------- 87 (161)
.+++++|.+++.|+++++++|
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G 157 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIG 157 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEEC
Confidence 999999999999999999987
Q ss_pred -----------cCCC--CCCCHHHHHHHHHHHHHHhhccCC-CCCCcEEEEEEE
Q 040809 88 -----------QDYK--DDMTRQEAVQLALKVLRKTMDSTS-LTSEKLELAEVF 127 (161)
Q Consensus 88 -----------~~y~--~~mt~eeai~la~~al~~~~~~~~-~~~~~iei~ii~ 127 (161)
++|+ ++|+++|++++|+++|+.+++++. +++++|||++|+
T Consensus 158 ~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 158 ARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 3577 599999999999999999999776 999999999984
No 14
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=8.9e-32 Score=207.73 Aligned_cols=118 Identities=39% Similarity=0.680 Sum_probs=109.7
Q ss_pred CCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHH
Q 040809 5 YDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDAN 66 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 66 (161)
||+++|+|||||||+||||| | |||+|+|.+..+... +..+|||+|++|++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~-~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDP-RTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCC-CccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999999 5 999999988876654 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc-----------------------------------------------------------
Q 040809 67 ILINTARVQARRYAYAYQEPI----------------------------------------------------------- 87 (161)
Q Consensus 67 ~l~~~~r~~~~~y~~~~~~~i----------------------------------------------------------- 87 (161)
.+++++|.+++.|+++++++|
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 999999999999999999988
Q ss_pred ------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 88 ------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 88 ------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii 126 (161)
++|+++||++||++++++||.++++ .+++++||++|
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 3689999999999999999999996 78999999985
No 15
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-32 Score=205.91 Aligned_cols=149 Identities=36% Similarity=0.543 Sum_probs=134.0
Q ss_pred CC---CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEe
Q 040809 1 MS---RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVA 59 (161)
Q Consensus 1 m~---~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~s 59 (161)
|+ .|||++.++||||||+|||||| | ||++||-.+++|+++. ..+|||.|+.||||+++
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~-sn~ri~~V~r~iG~ava 79 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPG-SNERIFSVDRHIGMAVA 79 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccC-CCCceEeecccccEEEe
Confidence 77 8999999999999999999999 6 9999999999999998 88999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCc---------------------------------------c-----------C
Q 040809 60 GIMSDANILINTARVQARRYAYAYQEPI---------------------------------------Q-----------D 89 (161)
Q Consensus 60 G~~~D~~~l~~~~r~~~~~y~~~~~~~i---------------------------------------~-----------~ 89 (161)
|+.||++.+++++|.++.+|+.+|+.|+ + .
T Consensus 80 Gl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~ 159 (254)
T KOG0184|consen 80 GLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYG 159 (254)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccc
Confidence 9999999999999999999999999988 0 0
Q ss_pred C--------------------CCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 040809 90 Y--------------------KDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLE 149 (161)
Q Consensus 90 y--------------------~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~ 149 (161)
| -++|+.+|+++-+.++|+.+++..+.....||++|++...+| .+..-|+||.+...
T Consensus 160 Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG---~h~~vp~el~~ea~ 236 (254)
T KOG0184|consen 160 YKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNG---LHEKVPSELLEEAE 236 (254)
T ss_pred eeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCC---ccccCcHHHHHHHH
Confidence 1 258999999999999999999988889999999999998876 44555668888776
Q ss_pred Hhcc
Q 040809 150 NFGV 153 (161)
Q Consensus 150 ~~~~ 153 (161)
+++.
T Consensus 237 ~~a~ 240 (254)
T KOG0184|consen 237 KYAK 240 (254)
T ss_pred HHHH
Confidence 6643
No 16
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.1e-31 Score=206.90 Aligned_cols=121 Identities=31% Similarity=0.667 Sum_probs=111.7
Q ss_pred CCCCCCcccCCCCceeeEecc------------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 4 RYDRQTTVFSPEGRLYQVDYM------------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 4 ~y~~~~~~fsp~Grl~qveya------------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
+||+++|+|||||||+||||| | |||+|+|.+++++.++ ..+|||+|++||+|++||+.+|
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~-~~~Ki~~I~~~i~~~~sG~~~D 79 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPS-TVTHLFRITDEIGCVMTGMIAD 79 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCc-ccCceEEEcCCEEEEEEechhh
Confidence 699999999999999999999 5 8999999998877765 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.+++++|.+++.|+++|+++|
T Consensus 80 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 80 SRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEE
Confidence 99999999999999999999988
Q ss_pred --------------cCCCCC--C--CHHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 88 --------------QDYKDD--M--TRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 88 --------------~~y~~~--m--t~eeai~la~~al~~~~~~~~~~~~~iei~ii 126 (161)
++|+++ | |.+||++++++||.++++|+ ++++++||+||
T Consensus 160 a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd-~~~~~~ei~~~ 215 (215)
T cd03754 160 AAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 246774 7 99999999999999999985 67999999986
No 17
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=4.3e-31 Score=204.39 Aligned_cols=122 Identities=50% Similarity=0.818 Sum_probs=113.5
Q ss_pred CCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHH
Q 040809 4 RYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 65 (161)
Q Consensus 4 ~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 65 (161)
+||+++|+|||||||+||||| | |||+|+|.++++... ++.+|||+|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~-~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEP-ESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCC-CccceEEEEcCCEEEEEecCHHHH
Confidence 699999999999999999999 5 999999998777664 488999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc----------------------------------------------------------
Q 040809 66 NILINTARVQARRYAYAYQEPI---------------------------------------------------------- 87 (161)
Q Consensus 66 ~~l~~~~r~~~~~y~~~~~~~i---------------------------------------------------------- 87 (161)
+.+++++|.+++.|++++++++
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~ 159 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAI 159 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEE
Confidence 9999999999999999999887
Q ss_pred ------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEE
Q 040809 88 ------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVF 127 (161)
Q Consensus 88 ------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~ 127 (161)
+.|+|+|+++||++++++||..+.++ ..++++++|++|+
T Consensus 160 G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~-~~~~~~~~v~ii~ 210 (211)
T cd03756 160 GSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEE-NETPENVEIAYVT 210 (211)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEe
Confidence 36899999999999999999999986 4699999999996
No 18
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=202.92 Aligned_cols=149 Identities=30% Similarity=0.513 Sum_probs=133.6
Q ss_pred CC-CCCCCCCcccCCCCceeeEecc-----------e-------EEEEEcccCCCCcccCCCCCceEEecCceEEEEecc
Q 040809 1 MS-RRYDRQTTVFSPEGRLYQVDYM-----------G-------CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGI 61 (161)
Q Consensus 1 m~-~~y~~~~~~fsp~Grl~qveya-----------G-------Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~ 61 (161)
|. +.||.++|+|||+|||+||||| | ||++-+|..+.|.. .+.|||+||+|++++++|+
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLss---~QkKi~~iD~h~g~siAGL 77 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELSS---HQKKIFKIDDHIGISIAGL 77 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHHH---hhheeEecccccceEEecc
Confidence 44 8899999999999999999999 2 99999999998853 6799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc-----------------c------------------------------------
Q 040809 62 MSDANILINTARVQARRYAYAYQEPI-----------------Q------------------------------------ 88 (161)
Q Consensus 62 ~~D~~~l~~~~r~~~~~y~~~~~~~i-----------------~------------------------------------ 88 (161)
.+|+|.|++++|.+|..|++.|++++ +
T Consensus 78 t~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~ 157 (264)
T KOG0863|consen 78 TADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECK 157 (264)
T ss_pred CcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEe
Confidence 99999999999999999999999998 0
Q ss_pred ------------CC-------CCCCCHHHHHHHHHHHHHHhhcc-CCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 040809 89 ------------DY-------KDDMTRQEAVQLALKVLRKTMDS-TSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148 (161)
Q Consensus 89 ------------~y-------~~~mt~eeai~la~~al~~~~~~-~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l 148 (161)
-| .++++.||+|+.++.||++++.. +.+++.|++|+||.++. .|+.++.+++.+++
T Consensus 158 g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~----pf~~~d~~~~~k~~ 233 (264)
T KOG0863|consen 158 GMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE----PFTILDQKDVAKYV 233 (264)
T ss_pred eeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC----ceEeecHHHHHHHH
Confidence 01 37999999999999999999984 48999999999999997 69999999999998
Q ss_pred HHhcccCC
Q 040809 149 ENFGVAQP 156 (161)
Q Consensus 149 ~~~~~~~~ 156 (161)
.......+
T Consensus 234 ~~~~~~~~ 241 (264)
T KOG0863|consen 234 DLFKKVDE 241 (264)
T ss_pred HHhhcCCC
Confidence 77654433
No 19
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.6e-30 Score=201.53 Aligned_cols=120 Identities=48% Similarity=0.850 Sum_probs=110.4
Q ss_pred CCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHH
Q 040809 5 YDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDAN 66 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 66 (161)
||+++|+|||||||+||||| | |||+|+|.++++...+ ..+||++|++||+|++||+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~-~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPS-SVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCC-ccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999999 5 8999999988876654 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc-----------------------------------------------------------
Q 040809 67 ILINTARVQARRYAYAYQEPI----------------------------------------------------------- 87 (161)
Q Consensus 67 ~l~~~~r~~~~~y~~~~~~~i----------------------------------------------------------- 87 (161)
.+++.+|.+++.|++.++++|
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~ 159 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCD 159 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeeccc
Confidence 999999999999998888765
Q ss_pred ----------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 88 ----------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 88 ----------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii 126 (161)
++|+++|+++||++++++||+.+.++ .++++++||++|
T Consensus 160 ~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~-~~~~~~~ei~~~ 213 (213)
T cd03753 160 AKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEE-KLNSTNVELATV 213 (213)
T ss_pred EEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEC
Confidence 36899999999999999999999875 699999999985
No 20
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.97 E-value=6.6e-30 Score=197.44 Aligned_cols=120 Identities=53% Similarity=0.930 Sum_probs=112.1
Q ss_pred CCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHH
Q 040809 5 YDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDAN 66 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 66 (161)
||+++|+|||||||+||||| | |||+|+|.+.++.. .++.+|||+|+++++|+.||..+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLD-PSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccC-CcccceEEEecCCeEEEeccCcHhHH
Confidence 89999999999999999999 5 89999999987664 35889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc-----------------------------------------------------------
Q 040809 67 ILINTARVQARRYAYAYQEPI----------------------------------------------------------- 87 (161)
Q Consensus 67 ~l~~~~r~~~~~y~~~~~~~i----------------------------------------------------------- 87 (161)
.+.+.++..+..|++.++++|
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 999999999999999999887
Q ss_pred ------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 88 ------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 88 ------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii 126 (161)
+.|+++|+++||++++++||..+.+++. ++++++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 3689999999999999999999999987 9999999985
No 21
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.94 E-value=9.9e-26 Score=178.40 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=126.4
Q ss_pred ccCCCCceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc-
Q 040809 11 VFSPEGRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI- 87 (161)
Q Consensus 11 ~fsp~Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i- 87 (161)
.++.-+.+.-|.|. | |||+|+|.+.+.++..++.+|||+|++|++|++||+.+|++.|++++|.+++.|++.++++|
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 44445568888887 6 99999999975555556899999999999999999999999999999999999999999987
Q ss_pred -----------------------------------------------------------------cCCCCCCCHHHHHHH
Q 040809 88 -----------------------------------------------------------------QDYKDDMTRQEAVQL 102 (161)
Q Consensus 88 -----------------------------------------------------------------~~y~~~mt~eeai~l 102 (161)
+.|+++||.+||+++
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l 194 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDL 194 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHH
Confidence 468999999999999
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCC
Q 040809 103 ALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQP 156 (161)
Q Consensus 103 a~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~ 156 (161)
+++||+.+.+|+..++++++|++|+++ +|+.|+++||+++++++.++++
T Consensus 195 ~~kal~~~~~Rd~~sg~~~ei~iI~k~-----g~~~l~~~ei~~~l~~~~~~~~ 243 (247)
T PTZ00488 195 GRRAIYHATFRDAYSGGAINLYHMQKD-----GWKKISADDCFDLHQKYAAEKE 243 (247)
T ss_pred HHHHHHHHHHhccccCCCeEEEEEcCC-----ccEECCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999976 4899999999999999876654
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.91 E-value=1.7e-23 Score=163.00 Aligned_cols=132 Identities=21% Similarity=0.274 Sum_probs=115.6
Q ss_pred ceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Q 040809 17 RLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------- 87 (161)
Q Consensus 17 rl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------- 87 (161)
.+.-+.+. | |||+|+|.+++.++.+++.+|||+|++|++|++||+.+|++.+++++|.+++.|++.++++|
T Consensus 4 T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~ 83 (219)
T TIGR03690 4 TIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKAN 83 (219)
T ss_pred EEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 35666676 6 99999999985555555899999999999999999999999999999999999999999887
Q ss_pred -----------------------------------------------------------------cCCCCCCCHHHHHHH
Q 040809 88 -----------------------------------------------------------------QDYKDDMTRQEAVQL 102 (161)
Q Consensus 88 -----------------------------------------------------------------~~y~~~mt~eeai~l 102 (161)
++|+++||.+||+++
T Consensus 84 ~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l 163 (219)
T TIGR03690 84 RLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRV 163 (219)
T ss_pred HHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHH
Confidence 368999999999999
Q ss_pred HHHHHHHhhccCCCCCCc-------EEEEEEEeCCCCceeEEECCHHHHHHHHHHhcc
Q 040809 103 ALKVLRKTMDSTSLTSEK-------LELAEVFLLPSGKVKYRICSPESLTMLLENFGV 153 (161)
Q Consensus 103 a~~al~~~~~~~~~~~~~-------iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~ 153 (161)
+++||..+.+++..+++. +||++|+++ .|++|+++||+++++++.+
T Consensus 164 ~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~-----g~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 164 AVEALYDAADDDSATGGPDLVRGIYPTVVVITAD-----GARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHhcccccCCcccccccccEEEEEccC-----ceEEcCHHHHHHHHHHHHh
Confidence 999999999987756653 399999755 4999999999999988754
No 23
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=1.7e-23 Score=159.29 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=103.2
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-+.|. | |||+|+|.+++.++.+++.+|||+|++|++|++||+.+|++.|++++|.+++.|++.|+++|
T Consensus 4 igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~l 83 (188)
T cd03761 4 LAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLL 83 (188)
T ss_pred EEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 445555 6 99999999997777666899999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHh
Q 040809 88 ---------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 88 ---------------------------------------------------------~~y~~~mt~eeai~la~~al~~~ 110 (161)
++|+++||++||++++++||+.+
T Consensus 84 s~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~ 163 (188)
T cd03761 84 SNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHA 163 (188)
T ss_pred HHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999
Q ss_pred hccCCCCCCcEEEEEEEeCC
Q 040809 111 MDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 111 ~~~~~~~~~~iei~ii~~~~ 130 (161)
.+||..++++++|++|++++
T Consensus 164 ~~rd~~sg~~~~v~ii~~~g 183 (188)
T cd03761 164 THRDAYSGGNVNLYHVREDG 183 (188)
T ss_pred HHhcccCCCCeEEEEEcCCc
Confidence 99999999999999999874
No 24
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=7.1e-23 Score=156.74 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=106.9
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
|.+.-+-|. | |||+|+|.+++++++++..+|||+|++|++|++||+.+|++.+++++|.+++.|++.++++|
T Consensus 4 ~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 83 (195)
T cd03759 4 GAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFS 83 (195)
T ss_pred ceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 447777787 6 99999999999998776789999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------cCCCCCCCHHHHHHHHHH
Q 040809 88 --------------------------------------------------------------QDYKDDMTRQEAVQLALK 105 (161)
Q Consensus 88 --------------------------------------------------------------~~y~~~mt~eeai~la~~ 105 (161)
+.|+++||.+||++++++
T Consensus 84 ~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 163 (195)
T cd03759 84 SLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQ 163 (195)
T ss_pred HHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 368999999999999999
Q ss_pred HHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 106 VLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 106 al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
||+.+.+|+..++++++|++|++++
T Consensus 164 ~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 164 ALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHhhCcccCCceEEEEEcCCc
Confidence 9999999999999999999999874
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=3.8e-22 Score=152.56 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=102.0
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
..+.|. | |||+|+|.+.+.++.+++.+|||+|++|++|++||+.+|++.|++++|.+++.|++.+++++
T Consensus 5 igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l 84 (193)
T cd03758 5 IGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFT 84 (193)
T ss_pred EEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445555 6 99999999887656566899999999999999999999999999999999999999999887
Q ss_pred ------------------------------------------------------------cCCCCCCCHHHHHHHHHHHH
Q 040809 88 ------------------------------------------------------------QDYKDDMTRQEAVQLALKVL 107 (161)
Q Consensus 88 ------------------------------------------------------------~~y~~~mt~eeai~la~~al 107 (161)
+.|+++||++||++++++|+
T Consensus 85 ~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~ 164 (193)
T cd03758 85 RRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCI 164 (193)
T ss_pred HHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999
Q ss_pred HHhhccCCCCCCcEEEEEEEeCC
Q 040809 108 RKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 108 ~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
..+.+||..++++++|++|++++
T Consensus 165 ~~~~~rd~~~~~~i~i~ii~~~g 187 (193)
T cd03758 165 KELKKRFIINLPNFTVKVVDKDG 187 (193)
T ss_pred HHHHHhccccCCceEEEEEcCCC
Confidence 99999999999999999999874
No 26
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.88 E-value=4.9e-22 Score=155.67 Aligned_cols=115 Identities=25% Similarity=0.360 Sum_probs=101.0
Q ss_pred e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhC-CCc---------------
Q 040809 25 G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQ-EPI--------------- 87 (161)
Q Consensus 25 G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~-~~i--------------- 87 (161)
| |||+|++. ++.+|||+|++||+|++||+.+|++.+++++|.+++.|++.|+ .++
T Consensus 38 gVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~ 109 (228)
T TIGR03691 38 GILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGT 109 (228)
T ss_pred eEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccc
Confidence 6 99999972 2579999999999999999999999999999999999999998 444
Q ss_pred ---------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHh
Q 040809 88 ---------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 88 ---------------------------------------------------------~~y~~~mt~eeai~la~~al~~~ 110 (161)
++|+++||++||+++|++||+.+
T Consensus 110 ~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~ 189 (228)
T TIGR03691 110 IFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAG 189 (228)
T ss_pred ccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 35899999999999999999999
Q ss_pred hc--cCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 040809 111 MD--STSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148 (161)
Q Consensus 111 ~~--~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l 148 (161)
++ ++.+++.++||++|+++.. ...|++|+++||+++|
T Consensus 190 ~~~~r~~~~~~~iEv~ii~k~~~-~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 190 GNGEKRELDAASLEVAVLDRSRP-RRAFRRITGEALERLL 228 (228)
T ss_pred hccccccCCccceEEEEEeCCCC-ccceEECCHHHHHhhC
Confidence 64 5679999999999997531 2269999999999875
No 27
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=4.6e-22 Score=156.37 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=107.0
Q ss_pred Eecc-e-EEEEEcccCCCCcccCCCCCceEEec----CceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCC-Cc------
Q 040809 21 VDYM-G-CLVGENNVTSKLLQTSTSAEKMYKID----DHVACAVAGIMSDANILINTARVQARRYAYAYQE-PI------ 87 (161)
Q Consensus 21 veya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~----~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~-~i------ 87 (161)
|.+. | |||+|+|.++++...+ +.+|||+|+ +||+||.||+.+|++.+++++|.+++.|++++|+ ++
T Consensus 6 Ik~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la 84 (236)
T cd03765 6 IKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAA 84 (236)
T ss_pred EEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHH
Confidence 3444 6 9999999999988877 789999998 8999999999999999999999999999999999 56
Q ss_pred --------------------------------------------------------------------------cCCCCC
Q 040809 88 --------------------------------------------------------------------------QDYKDD 93 (161)
Q Consensus 88 --------------------------------------------------------------------------~~y~~~ 93 (161)
++|+++
T Consensus 85 ~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~~~~a~~~Lek~yk~~ 164 (236)
T cd03765 85 RYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGETKYGKPILDRVITPD 164 (236)
T ss_pred HHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCCchhhHHHHHHhcCCC
Confidence 246899
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHH
Q 040809 94 MTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPES 143 (161)
Q Consensus 94 mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~e 143 (161)
||++||+++|++||.+++++|..++.+|+|++|++++.-....+++..++
T Consensus 165 ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~ 214 (236)
T cd03765 165 TSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDD 214 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCC
Confidence 99999999999999999999999999999999999854222566676655
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=5.4e-22 Score=153.76 Aligned_cols=115 Identities=16% Similarity=0.276 Sum_probs=105.6
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
+.+.-+.|. | |||+|+|.++++++..+..+|||+|++|++|++||+.+|++.+++++|.+++.|++.++++|
T Consensus 9 ~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la 88 (212)
T cd03757 9 GTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIA 88 (212)
T ss_pred ccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHH
Confidence 348889998 5 99999999999988666899999999999999999999999999999999999999999887
Q ss_pred -------------------------------------------------------------cCC---------CCCCCHH
Q 040809 88 -------------------------------------------------------------QDY---------KDDMTRQ 97 (161)
Q Consensus 88 -------------------------------------------------------------~~y---------~~~mt~e 97 (161)
+.| +++||++
T Consensus 89 ~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~e 168 (212)
T cd03757 89 QLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLE 168 (212)
T ss_pred HHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHH
Confidence 133 3899999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 98 EAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 98 eai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
||++++++||+.+.+||..++++++|++|++++
T Consensus 169 ea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g 201 (212)
T cd03757 169 EAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG 201 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC
Confidence 999999999999999999999999999999875
No 29
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=1.3e-21 Score=148.67 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=102.5
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-+-|. | |||+|+|.+.+.++.+++.+|||+|++|++|++||+.+|++.+.+.+|.+++.|++.+++++
T Consensus 4 igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l 83 (188)
T cd03762 4 IAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLF 83 (188)
T ss_pred EEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHH
Confidence 345555 6 89999999997666666899999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHh
Q 040809 88 ---------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 88 ---------------------------------------------------------~~y~~~mt~eeai~la~~al~~~ 110 (161)
+.|+++||++||++++++||+.+
T Consensus 84 ~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~ 163 (188)
T cd03762 84 KNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLA 163 (188)
T ss_pred HHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999
Q ss_pred hccCCCCCCcEEEEEEEeCC
Q 040809 111 MDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 111 ~~~~~~~~~~iei~ii~~~~ 130 (161)
.+||..++++++|++|++++
T Consensus 164 ~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 164 MSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred HHhccccCCCEEEEEECCCC
Confidence 99999999999999999874
No 30
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=1.4e-21 Score=148.76 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=102.5
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
..+-|. | |||+|+|.+++.++..+..+|||+|+++++|++||+.+|++.+++++|.+++.|++.+++++
T Consensus 4 igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l 83 (189)
T cd03763 4 VGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTML 83 (189)
T ss_pred EEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344555 6 99999999998777666889999999999999999999999999999999999999999887
Q ss_pred --------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHhh
Q 040809 88 --------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKTM 111 (161)
Q Consensus 88 --------------------------------------------------------~~y~~~mt~eeai~la~~al~~~~ 111 (161)
++|+|+||++||++++++||..+.
T Consensus 84 ~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~ 163 (189)
T cd03763 84 KQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGI 163 (189)
T ss_pred HHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999
Q ss_pred ccCCCCCCcEEEEEEEeCC
Q 040809 112 DSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 112 ~~~~~~~~~iei~ii~~~~ 130 (161)
+|+..++++++|++|++++
T Consensus 164 ~rd~~~~~~~~v~ii~~~g 182 (189)
T cd03763 164 FNDLGSGSNVDLCVITKDG 182 (189)
T ss_pred HhcCcCCCceEEEEEcCCc
Confidence 9999999999999999874
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=6.5e-21 Score=144.88 Aligned_cols=117 Identities=24% Similarity=0.451 Sum_probs=105.4
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+..+.|. | |||+|+|.+++.++..+..+||++|++|++|+++|+.+|++.+.+.+|.+++.|++.+++++
T Consensus 3 ~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (188)
T cd03764 3 TVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATL 82 (188)
T ss_pred EEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3456666 5 89999999987666666899999999999999999999999999999999999999999887
Q ss_pred ----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHH
Q 040809 88 ----------------------------------------------------------QDYKDDMTRQEAVQLALKVLRK 109 (161)
Q Consensus 88 ----------------------------------------------------------~~y~~~mt~eeai~la~~al~~ 109 (161)
+.|+++|+++||++++++||+.
T Consensus 83 i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~ 162 (188)
T cd03764 83 LSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKS 162 (188)
T ss_pred HHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999
Q ss_pred hhccCCCCCCcEEEEEEEeCCCCceeEEEC
Q 040809 110 TMDSTSLTSEKLELAEVFLLPSGKVKYRIC 139 (161)
Q Consensus 110 ~~~~~~~~~~~iei~ii~~~~~g~~~~~~l 139 (161)
+.+|+..++++++|++|++++ +++|
T Consensus 163 ~~~rd~~~~~~i~i~iv~~~g-----~~~~ 187 (188)
T cd03764 163 AIERDSASGDGIDVVVITKDG-----YKEL 187 (188)
T ss_pred HHhhcCCCCCcEEEEEECCCC-----eEeC
Confidence 999999999999999999773 7765
No 32
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=5.3e-21 Score=146.55 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=100.2
Q ss_pred ceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHH-HHHHHhCCCc------
Q 040809 17 RLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAR-RYAYAYQEPI------ 87 (161)
Q Consensus 17 rl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~y~~~~~~~i------ 87 (161)
.+.-+.+. | |||+|+|.+.+.++..+..+|||+|++|++|+++|+.+|++.+++++|.+++ .|++.++++|
T Consensus 4 T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la 83 (197)
T cd03760 4 SVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIH 83 (197)
T ss_pred eEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 46677777 5 9999999985444444588999999999999999999999999999999997 5667888777
Q ss_pred ---------------------------------------------------------------cCCCC--CCCHHHHHHH
Q 040809 88 ---------------------------------------------------------------QDYKD--DMTRQEAVQL 102 (161)
Q Consensus 88 ---------------------------------------------------------------~~y~~--~mt~eeai~l 102 (161)
+.|++ +||++||+++
T Consensus 84 ~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l 163 (197)
T cd03760 84 SYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARAL 163 (197)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 36888 9999999999
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 103 ALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 103 a~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
+++||+.+.+|+..++++++|++|++++
T Consensus 164 ~~~~l~~~~~rd~~~~~~~~i~ii~~~g 191 (197)
T cd03760 164 IEECMKVLYYRDARSINKYQIAVVTKEG 191 (197)
T ss_pred HHHHHHHHHHhccccCCceEEEEECCCC
Confidence 9999999999999999999999999874
No 33
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.86 E-value=6.6e-21 Score=144.43 Aligned_cols=113 Identities=22% Similarity=0.434 Sum_probs=102.6
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-+.|. | |||+|+|.+.+.++..+..+|||+|++|++|++||..+|++.+.+++|.+++.|++.+++++
T Consensus 4 ~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 83 (185)
T TIGR03634 4 TVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATL 83 (185)
T ss_pred EEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 4556666 6 89999999876666666899999999999999999999999999999999999999999887
Q ss_pred ----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHH
Q 040809 88 ----------------------------------------------------------QDYKDDMTRQEAVQLALKVLRK 109 (161)
Q Consensus 88 ----------------------------------------------------------~~y~~~mt~eeai~la~~al~~ 109 (161)
+.|+++||++||++++++||+.
T Consensus 84 l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~ 163 (185)
T TIGR03634 84 LSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKS 163 (185)
T ss_pred HHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999
Q ss_pred hhccCCCCCCcEEEEEEEeCC
Q 040809 110 TMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 110 ~~~~~~~~~~~iei~ii~~~~ 130 (161)
+.+++..++.+++|++|++++
T Consensus 164 ~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 164 AIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHhcccCCCCEEEEEEcCCC
Confidence 999999999999999999764
No 34
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.4e-21 Score=143.52 Aligned_cols=129 Identities=16% Similarity=0.300 Sum_probs=120.3
Q ss_pred eeeEecce--EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYMG--CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveyaG--Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
|..|+|.| ||++|.|.+.+-++.+|-.+|+.+|+|+|+||.||.++|.+++.+.++.....|...+++|+
T Consensus 22 ImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l 101 (224)
T KOG0174|consen 22 IMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASL 101 (224)
T ss_pred EEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Confidence 89999995 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHH
Q 040809 88 ----------------------------------------------------------QDYKDDMTRQEAVQLALKVLRK 109 (161)
Q Consensus 88 ----------------------------------------------------------~~y~~~mt~eeai~la~~al~~ 109 (161)
+.|+|+||+||++.+..+|+..
T Consensus 102 ~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~l 181 (224)
T KOG0174|consen 102 FREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSL 181 (224)
T ss_pred HHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999
Q ss_pred hhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 040809 110 TMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLE 149 (161)
Q Consensus 110 ~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~ 149 (161)
++.||-.+|..|.+.+|++++- .++.+.++++..+..
T Consensus 182 Ai~rDGsSGGviR~~~I~~~Gv---er~~~~~d~~~~~~v 218 (224)
T KOG0174|consen 182 AIERDGSSGGVIRLVIINKAGV---ERRFFPGDKLGQFAV 218 (224)
T ss_pred HHhccCCCCCEEEEEEEccCCc---eEEEecCCccccccc
Confidence 9999999999999999999864 677888888766543
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.84 E-value=5e-20 Score=139.81 Aligned_cols=113 Identities=22% Similarity=0.333 Sum_probs=103.1
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-+.|. | |||+|+|.++++.+.....+|||+|+++++|++||+.+|++.+++++|.+++.|++.+++++
T Consensus 3 ~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (189)
T cd01912 3 IVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANL 82 (189)
T ss_pred EEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445565 6 99999999999988555899999999999999999999999999999999999999999877
Q ss_pred -----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHH
Q 040809 88 -----------------------------------------------------------QDYKDDMTRQEAVQLALKVLR 108 (161)
Q Consensus 88 -----------------------------------------------------------~~y~~~mt~eeai~la~~al~ 108 (161)
+.|+++|+++||++++++||.
T Consensus 83 l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~ 162 (189)
T cd01912 83 LSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAID 162 (189)
T ss_pred HHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999
Q ss_pred HhhccCCCCCCcEEEEEEEeCC
Q 040809 109 KTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 109 ~~~~~~~~~~~~iei~ii~~~~ 130 (161)
.+.+++..++.+++|++|++++
T Consensus 163 ~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 163 SAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHhcCccCCcEEEEEECCCC
Confidence 9999999999999999999874
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.80 E-value=2.4e-18 Score=129.47 Aligned_cols=109 Identities=39% Similarity=0.662 Sum_probs=98.7
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|-|. | |||+|+|.++++.+..++.+|||+|+++++|+.+|+.+|++.+.+.++.++..|++.+++++
T Consensus 3 ~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (182)
T cd01906 3 IVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKL 82 (182)
T ss_pred EEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3455565 6 99999999999887556899999999999999999999999999999999999999998887
Q ss_pred -------------------------------------------------------------cCCCCCCCHHHHHHHHHHH
Q 040809 88 -------------------------------------------------------------QDYKDDMTRQEAVQLALKV 106 (161)
Q Consensus 88 -------------------------------------------------------------~~y~~~mt~eeai~la~~a 106 (161)
+.|+++||.+||++++++|
T Consensus 83 l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~ 162 (182)
T cd01906 83 LANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKA 162 (182)
T ss_pred HHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 3578999999999999999
Q ss_pred HHHhhccCCCCCCcEEEEEE
Q 040809 107 LRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 107 l~~~~~~~~~~~~~iei~ii 126 (161)
|..+.+++..++.+++|++|
T Consensus 163 l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 163 LKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHcccCCCCCCEEEEEC
Confidence 99999998889999999985
No 37
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.78 E-value=2.5e-18 Score=130.19 Aligned_cols=110 Identities=28% Similarity=0.544 Sum_probs=98.0
Q ss_pred ceeeEecc-e-EEEEEcccCCCCcccCCC-CCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 17 RLYQVDYM-G-CLVGENNVTSKLLQTSTS-AEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 17 rl~qveya-G-Vlaadkr~~~~l~~~~~~-~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
.+.-+-|. | |||+|+|.+.+..+..+. .+|||+|++|++|++||..+|++.+.++++.+++.|++.++.++
T Consensus 6 t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 85 (190)
T PF00227_consen 6 TVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLA 85 (190)
T ss_dssp EEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHH
T ss_pred EEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhh
Confidence 36677777 5 999999999554442323 69999999999999999999999999999999999999999988
Q ss_pred ------------------------------------------------------------------cCCCCCCCHHHHHH
Q 040809 88 ------------------------------------------------------------------QDYKDDMTRQEAVQ 101 (161)
Q Consensus 88 ------------------------------------------------------------------~~y~~~mt~eeai~ 101 (161)
+.|+++||++||++
T Consensus 86 ~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~ 165 (190)
T PF00227_consen 86 KAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIE 165 (190)
T ss_dssp HHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHH
T ss_pred hhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHH
Confidence 24689999999999
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEE
Q 040809 102 LALKVLRKTMDSTSLTSEKLELAEV 126 (161)
Q Consensus 102 la~~al~~~~~~~~~~~~~iei~ii 126 (161)
++++||+.+.+++..++++++|+||
T Consensus 166 ~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 166 LALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999999987
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.2e-18 Score=130.97 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=118.1
Q ss_pred e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc----------------
Q 040809 25 G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI---------------- 87 (161)
Q Consensus 25 G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i---------------- 87 (161)
| |+|+|.|++.+-+|.+..+.||..||+++.-+++|-++||+.+-+.+..+|+.|++++++.|
T Consensus 82 GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~Y 161 (285)
T KOG0175|consen 82 GVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQY 161 (285)
T ss_pred cEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhc
Confidence 6 88999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCC
Q 040809 88 --------------------------------------------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLT 117 (161)
Q Consensus 88 --------------------------------------------------~~y~~~mt~eeai~la~~al~~~~~~~~~~ 117 (161)
..|+++|+.|||.+|+.+||.-+.-||..+
T Consensus 162 kGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDayS 241 (285)
T KOG0175|consen 162 KGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYS 241 (285)
T ss_pred cCcchhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhccccc
Confidence 368999999999999999999999999999
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCC
Q 040809 118 SEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPA 157 (161)
Q Consensus 118 ~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~ 157 (161)
|.-+.+..|..++ +..++..++.++...+.+.+++
T Consensus 242 GG~vnlyHv~edG-----W~~v~~~Dv~~L~~~~~e~~~~ 276 (285)
T KOG0175|consen 242 GGVVNLYHVKEDG-----WVKVSNTDVSELHYHYYEVAPP 276 (285)
T ss_pred CceEEEEEECCcc-----ceecCCccHHHHHHHHHHhcCc
Confidence 9999999999873 8899999999996655444443
No 39
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-17 Score=126.84 Aligned_cols=115 Identities=15% Similarity=0.295 Sum_probs=103.0
Q ss_pred CceeeEecce--EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 16 GRLYQVDYMG--CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 16 Grl~qveyaG--Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
|.+..+.--+ |+|+|+|.++++.|.+|..+|||+++|++.++.||+++|+..|...++...+.|++.++..|
T Consensus 30 GT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A 109 (235)
T KOG0179|consen 30 GTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAA 109 (235)
T ss_pred ceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHH
Confidence 4454443323 99999999999999999999999999999999999999999999999999999999998888
Q ss_pred ------------------------------------------------------------------cCC------CCCCC
Q 040809 88 ------------------------------------------------------------------QDY------KDDMT 95 (161)
Q Consensus 88 ------------------------------------------------------------------~~y------~~~mt 95 (161)
+.+ ++.++
T Consensus 110 ~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls 189 (235)
T KOG0179|consen 110 QLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLS 189 (235)
T ss_pred HHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccC
Confidence 011 35789
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 96 RQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 96 ~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
+|+|++|+..+|..|.+|+..+|++++|+|+++++
T Consensus 190 ~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g 224 (235)
T KOG0179|consen 190 LERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG 224 (235)
T ss_pred HHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC
Confidence 99999999999999999999999999999999985
No 40
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.6e-17 Score=119.21 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=99.7
Q ss_pred EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------------------
Q 040809 26 CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------------------ 87 (161)
Q Consensus 26 Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------------------ 87 (161)
++|+|+|.....+..++..+|||+|.|+++++.+|+++|.+++.+++|..-..|+++.++.|
T Consensus 21 aIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRf 100 (204)
T KOG0180|consen 21 AIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRF 100 (204)
T ss_pred EEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhc
Confidence 78999999988777778999999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCC
Q 040809 88 --------------------------------------------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLT 117 (161)
Q Consensus 88 --------------------------------------------------~~y~~~mt~eeai~la~~al~~~~~~~~~~ 117 (161)
..|+|+|..|++++.+.+||.++.+||.++
T Consensus 101 gpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalS 180 (204)
T KOG0180|consen 101 GPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALS 180 (204)
T ss_pred CCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhc
Confidence 258999999999999999999999999999
Q ss_pred CCcEEEEEEEeCC
Q 040809 118 SEKLELAEVFLLP 130 (161)
Q Consensus 118 ~~~iei~ii~~~~ 130 (161)
|++..+.||+|+.
T Consensus 181 GwGa~vyiI~kdk 193 (204)
T KOG0180|consen 181 GWGAVVYIITKDK 193 (204)
T ss_pred cCCeEEEEEccch
Confidence 9999999999985
No 41
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.70 E-value=9.5e-17 Score=120.37 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=93.2
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecC-ceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDD-HVACAVAGIMSDANILINTARVQARRYAYAYQEPI------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------- 87 (161)
++-|.|. | |||+|+|.+.+.++.++..+||++|++ |++|+.||..+|++.|.++++.+++.|+.+.++.+
T Consensus 3 ivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~~aa~l~~~l 82 (171)
T cd01913 3 ILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLRAAVELAKDW 82 (171)
T ss_pred EEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 5667787 4 999999999999999999999999999 99999999999999999999999999997655443
Q ss_pred ----------------------------------------------------cCCCCC-CCHHHHHHHHHHHHHHhhccC
Q 040809 88 ----------------------------------------------------QDYKDD-MTRQEAVQLALKVLRKTMDST 114 (161)
Q Consensus 88 ----------------------------------------------------~~y~~~-mt~eeai~la~~al~~~~~~~ 114 (161)
..|+++ |+ +.++|++|++.+++||
T Consensus 83 ~~~~~~~~l~a~~iv~~~~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd 159 (171)
T cd01913 83 RTDRYLRRLEAMLIVADKEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAADIC 159 (171)
T ss_pred HhccCcCceEEEEEEeCCCcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhhC
Confidence 357885 99 5599999999999999
Q ss_pred CCCCCcEEEEE
Q 040809 115 SLTSEKLELAE 125 (161)
Q Consensus 115 ~~~~~~iei~i 125 (161)
..++++|.|-.
T Consensus 160 ~~tg~~i~~~~ 170 (171)
T cd01913 160 IYTNHNITVEE 170 (171)
T ss_pred cccCCCEEEEe
Confidence 99999998753
No 42
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.69 E-value=1.1e-16 Score=120.40 Aligned_cols=105 Identities=20% Similarity=0.247 Sum_probs=91.1
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEe-cCceEEEEeccHHHHHHHHHHHHHHHHHHHHH------------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKI-DDHVACAVAGIMSDANILINTARVQARRYAYA------------ 82 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~------------ 82 (161)
++-|.|. | |||+|+|.+.+.++.++..+||++| ++|++|+.||..+|++.|.+.++.+++.|+..
T Consensus 4 ivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~~~~~a~l~~~l 83 (172)
T PRK05456 4 ILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNLLRAAVELAKDW 83 (172)
T ss_pred EEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 5677887 4 9999999999999999999999999 99999999999999999999999987777621
Q ss_pred ----hCCCc-------------------------------------------cCCC-CCCCHHHHHHHHHHHHHHhhccC
Q 040809 83 ----YQEPI-------------------------------------------QDYK-DDMTRQEAVQLALKVLRKTMDST 114 (161)
Q Consensus 83 ----~~~~i-------------------------------------------~~y~-~~mt~eeai~la~~al~~~~~~~ 114 (161)
|..++ ++|+ |+| ||++++++|+..+.+||
T Consensus 84 ~~~~~~~~l~~~~lv~d~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd 160 (172)
T PRK05456 84 RTDRYLRRLEAMLIVADKEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADIC 160 (172)
T ss_pred HhccCCCccEEEEEEEcCCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhC
Confidence 11111 3578 999 99999999999999999
Q ss_pred CCCCCcEEEEE
Q 040809 115 SLTSEKLELAE 125 (161)
Q Consensus 115 ~~~~~~iei~i 125 (161)
..+++++.|-.
T Consensus 161 ~~sg~~i~v~~ 171 (172)
T PRK05456 161 IYTNHNITIEE 171 (172)
T ss_pred eeCCCcEEEEE
Confidence 99999998754
No 43
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.65 E-value=6.1e-16 Score=116.01 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=91.2
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEe-cCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKI-DDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------- 87 (161)
++-|.|. | |||+|+|.+.+.++.++..+||++| ++|++|+.||..+|++.|.+++|.+++.|+...++.+
T Consensus 3 ivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~~~~~a~l~~~~ 82 (171)
T TIGR03692 3 ILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNLTRAAVELAKDW 82 (171)
T ss_pred EEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 5667787 4 9999999999999999999999999 5999999999999999999999999999986432222
Q ss_pred ----------------------------------------------------cCC-CCCCCHHHHHHHHHHHHHHhhccC
Q 040809 88 ----------------------------------------------------QDY-KDDMTRQEAVQLALKVLRKTMDST 114 (161)
Q Consensus 88 ----------------------------------------------------~~y-~~~mt~eeai~la~~al~~~~~~~ 114 (161)
..| +++|+ |+++|++|++.+++||
T Consensus 83 ~~~~~~~~l~a~~iv~~~~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd 159 (171)
T TIGR03692 83 RTDRYLRRLEAMLIVADKETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADIC 159 (171)
T ss_pred hhcccccccEEEEEEEcCCCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhC
Confidence 246 46777 9999999999999999
Q ss_pred CCCCCcEEEEE
Q 040809 115 SLTSEKLELAE 125 (161)
Q Consensus 115 ~~~~~~iei~i 125 (161)
..++++|.|-.
T Consensus 160 ~~sg~~i~v~~ 170 (171)
T TIGR03692 160 IYTNHNITIEE 170 (171)
T ss_pred ccCCCCEEEEe
Confidence 99999998753
No 44
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-15 Score=117.35 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=108.0
Q ss_pred cccCCCCc-eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCC
Q 040809 10 TVFSPEGR-LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEP 86 (161)
Q Consensus 10 ~~fsp~Gr-l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~ 86 (161)
..|...|. |.-|-|- | ||++|+|.+.+-.+++++.+||+.|.++|+||.+|-.+|...+.+.+..+...|+++.++.
T Consensus 31 p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 31 PKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred CcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 34555666 6666666 5 9999999999999999999999999999999999999999999999999999999888877
Q ss_pred c-----------------------------------------------------------------cCCCCCCCHHHHHH
Q 040809 87 I-----------------------------------------------------------------QDYKDDMTRQEAVQ 101 (161)
Q Consensus 87 i-----------------------------------------------------------------~~y~~~mt~eeai~ 101 (161)
+ .+|+|+|+.|||++
T Consensus 111 ~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~ 190 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIK 190 (271)
T ss_pred CceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHH
Confidence 6 36999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 102 LALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 102 la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
|+.+|+...+-.|-.+|.||.++||++.+
T Consensus 191 Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 191 LVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred HHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 99999999998888999999999999643
No 45
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=114.20 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=99.9
Q ss_pred EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------------------
Q 040809 26 CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------------------ 87 (161)
Q Consensus 26 Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------------------ 87 (161)
+||+|+....++...+.+.+|+++|++|+.|+.+|-.||+-.+.+++...++.|+.++|.++
T Consensus 14 ilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LR 93 (200)
T KOG0177|consen 14 ILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLR 93 (200)
T ss_pred EEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 78999999989888888999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHhhccCCC
Q 040809 88 ---------------------------------------------------QDYKDDMTRQEAVQLALKVLRKTMDSTSL 116 (161)
Q Consensus 88 ---------------------------------------------------~~y~~~mt~eeai~la~~al~~~~~~~~~ 116 (161)
++|+|+||.+||+.+..+|+.+.-.|..+
T Consensus 94 sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvi 173 (200)
T KOG0177|consen 94 SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVI 173 (200)
T ss_pred cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 36899999999999999999999999999
Q ss_pred CCCcEEEEEEEeCC
Q 040809 117 TSEKLELAEVFLLP 130 (161)
Q Consensus 117 ~~~~iei~ii~~~~ 130 (161)
...++.|.||+|++
T Consensus 174 n~~~f~v~IVdkdG 187 (200)
T KOG0177|consen 174 NLPGFIVKIVDKDG 187 (200)
T ss_pred CCCCcEEEEEcCCC
Confidence 99999999999985
No 46
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.39 E-value=4.6e-14 Score=71.03 Aligned_cols=20 Identities=65% Similarity=1.250 Sum_probs=19.5
Q ss_pred CCCCCcccCCCCceeeEecc
Q 040809 5 YDRQTTVFSPEGRLYQVDYM 24 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya 24 (161)
||+++|+|||+|||+|||||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA 20 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYA 20 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHH
T ss_pred CCCCceeECCCCeEEeeEee
Confidence 89999999999999999998
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.17 E-value=4.3e-10 Score=81.61 Aligned_cols=68 Identities=28% Similarity=0.430 Sum_probs=60.5
Q ss_pred eEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 040809 20 QVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87 (161)
Q Consensus 20 qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i 87 (161)
-+.+. | |||+|++.+.++........||+.++++++++++|+.+|++.+.++++.+++.|++.++.++
T Consensus 5 ~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~ 74 (164)
T cd01901 5 AIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPI 74 (164)
T ss_pred EEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34444 5 99999999999887555889999999999999999999999999999999999999888765
No 48
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.9e-08 Score=74.48 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=90.7
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHH-HhCCCc-------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAY-AYQEPI------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~-~~~~~i------- 87 (161)
+..+.|. | |+|+|+..+-+.+--=+.++|||+|++++.+++||=.+|.+.+.+.+.....+... -=|..+
T Consensus 44 Vla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~ 123 (256)
T KOG0185|consen 44 VLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHS 123 (256)
T ss_pred EEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHH
Confidence 7788887 7 99999988765333224899999999999999999999999999999888776431 111222
Q ss_pred --------------------------------------------------------------cCCC---CCCCHHHHHHH
Q 040809 88 --------------------------------------------------------------QDYK---DDMTRQEAVQL 102 (161)
Q Consensus 88 --------------------------------------------------------------~~y~---~~mt~eeai~l 102 (161)
+.|. ++++.+||..+
T Consensus 124 yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~l 203 (256)
T KOG0185|consen 124 YLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEAL 203 (256)
T ss_pred HHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHH
Confidence 1222 67899999999
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 103 ALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 103 a~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
+.+|++-..-||.-+...++|++|+.++
T Consensus 204 i~~cMrVL~YRD~ra~n~fqva~v~~eG 231 (256)
T KOG0185|consen 204 IEKCMRVLYYRDARASNEFQVATVDEEG 231 (256)
T ss_pred HHHHHHHHhccccccccceEEEEEcccc
Confidence 9999999999999999999999999864
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.017 Score=42.96 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=45.2
Q ss_pred EEEEEcccCCCCcccCCCCCceEEecC-ceEEEEeccHHHHHHHHHHHHHHHHHHH
Q 040809 26 CLVGENNVTSKLLQTSTSAEKMYKIDD-HVACAVAGIMSDANILINTARVQARRYA 80 (161)
Q Consensus 26 Vlaadkr~~~~l~~~~~~~~KI~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~y~ 80 (161)
|+++|-..+-+-.+...+..|+-+|.. .+..+++|-.+|+..|..++..+++.|.
T Consensus 17 ~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~ 72 (178)
T COG5405 17 VIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ 72 (178)
T ss_pred EEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc
Confidence 788888877766666656666666654 8999999999999999999999998884
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=3.4 Score=32.06 Aligned_cols=40 Identities=23% Similarity=0.102 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 91 KDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 91 ~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
.-+++++|+.+.|+-++...+.....-|-.+.+-++.+|.
T Consensus 163 ~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 163 TYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 4588999999999999999887655556678888888764
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=70.69 E-value=28 Score=26.75 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=34.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeC
Q 040809 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLL 129 (161)
Q Consensus 88 ~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~ 129 (161)
++|++.|+++++.++...+|..+....+.-+...++...++.
T Consensus 139 k~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 139 KYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 568899999999999999999997665666667888777654
No 52
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=69.39 E-value=24 Score=23.25 Aligned_cols=55 Identities=35% Similarity=0.452 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 92 DDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 92 ~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
++-|..|++.+|++.|.... ...+..++-|+....|..+.++| |+.+.++.+++.
T Consensus 21 K~Tta~evv~lal~eFgi~~-----~s~~~sLceVtV~~~g~IKQrRL-Pdql~~La~RI~ 75 (85)
T cd01785 21 KETTAHEVVMLALQEFGITA-----PSSNFSLCEVSVTPGGVIKQRRL-PDQLQNLAERIQ 75 (85)
T ss_pred ccccHHHHHHHHHHHhCCCC-----CccceEEEEEEecCCceeeeccC-CHHHHHHHHhhc
Confidence 45677888888888876432 25677888888777777777777 677888877663
No 53
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=58.91 E-value=41 Score=24.54 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECC
Q 040809 91 KDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICS 140 (161)
Q Consensus 91 ~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~ 140 (161)
++.++++.|.+++-.++.++.+. +..+.|+||+.++. .+.|.+++
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~-~~a~~RmD 49 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGH-LVALERMD 49 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCC-EEEEEecC
Confidence 46789999999999999988752 88999999998753 33555544
No 54
>PRK09732 hypothetical protein; Provisional
Probab=58.17 E-value=44 Score=24.01 Aligned_cols=45 Identities=7% Similarity=-0.130 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 040809 92 DDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSP 141 (161)
Q Consensus 92 ~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~ 141 (161)
+.||++.|..++..++..+.+. +..+.|+||+..+. -..|.+++.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~-l~a~~RmDg 49 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGH-LLALSRMDD 49 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCC-EEEEEEcCC
Confidence 5689999999999999998863 66899999998653 235555443
No 55
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.85 E-value=19 Score=24.89 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=27.8
Q ss_pred ceEEecCceEEEEeccHHHHHHHHHHHHHHH
Q 040809 46 KMYKIDDHVACAVAGIMSDANILINTARVQA 76 (161)
Q Consensus 46 KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 76 (161)
-+|+|-+..|+.+-|..+|...+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4789999999999999999999999888754
No 56
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=48.24 E-value=36 Score=23.98 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECC
Q 040809 92 DDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICS 140 (161)
Q Consensus 92 ~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~ 140 (161)
|.+|+++|..++..++..+.++ +..+-|+||+..+. ...|.+++
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~-~~~~~r~d 44 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGH-LLAFARMD 44 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS--EEEEEE-T
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCC-EEEEEecC
Confidence 4578999999999999999874 45688999987642 23455554
No 57
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=47.80 E-value=30 Score=29.06 Aligned_cols=96 Identities=11% Similarity=0.207 Sum_probs=51.8
Q ss_pred cCCCCceeeEecceEEEEEcccCCCCcccCCCCCceEEecCceE--EEEeccHHHHH----HHHHHH----HHHHHHH--
Q 040809 12 FSPEGRLYQVDYMGCLVGENNVTSKLLQTSTSAEKMYKIDDHVA--CAVAGIMSDAN----ILINTA----RVQARRY-- 79 (161)
Q Consensus 12 fsp~Grl~qveyaGVlaadkr~~~~l~~~~~~~~KI~~I~~~i~--~~~sG~~~D~~----~l~~~~----r~~~~~y-- 79 (161)
.+++|+++-|+|-=+|...+... ++ + ..+.-|++++.+. ++..|..++.. .++-.+ |..+...
T Consensus 217 i~~~G~~~HIDFG~ilg~~~~~~-~~---~-~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~ 291 (354)
T cd05177 217 LTHSGHMFHIDFGKFLGHAQTFG-SI---K-RDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLN 291 (354)
T ss_pred EcCCCCEEEEehHHhcCCCcccc-CC---C-cCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46899999999952554333221 11 1 1245567777654 45556544432 222111 1111111
Q ss_pred --HHHhCCCc-------------cCCCCCCCHHHHHHHHHHHHHHhhc
Q 040809 80 --AYAYQEPI-------------QDYKDDMTRQEAVQLALKVLRKTMD 112 (161)
Q Consensus 80 --~~~~~~~i-------------~~y~~~mt~eeai~la~~al~~~~~ 112 (161)
..--..++ +.++.++|.+||.....+-+..+.+
T Consensus 292 l~~lm~~s~iP~~~~~~~i~~l~~~~~l~~sd~eA~~~f~~lI~~s~~ 339 (354)
T cd05177 292 LLEMMLHAGLPELKDIQDLKYVYNNLRPQDTDLEATSYFTKKIKESLE 339 (354)
T ss_pred HHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 11111222 4568999999999998888888774
No 58
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=47.34 E-value=33 Score=20.49 Aligned_cols=33 Identities=33% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCC
Q 040809 93 DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSG 132 (161)
Q Consensus 93 ~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g 132 (161)
.-|+|||+..|+.-|.. ..+.+++-|+....+|
T Consensus 4 gkt~eeAi~~A~~~l~~-------~~~~~~~eVi~~g~kG 36 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV-------PREELEYEVIEEGKKG 36 (52)
T ss_dssp ESSHHHHHHHHHHHTT---------GGGEEEEEEE--B--
T ss_pred ECCHHHHHHHHHHHhCC-------ChHHEEEEEEEcCCCc
Confidence 34788998888877654 3458899999986554
No 59
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=46.54 E-value=52 Score=23.62 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=36.1
Q ss_pred EEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc----------------------------------cCCCCCCCHHHHH
Q 040809 55 ACAVAGIMSDANILINTARVQARRYAYAYQEPI----------------------------------QDYKDDMTRQEAV 100 (161)
Q Consensus 55 ~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i----------------------------------~~y~~~mt~eeai 100 (161)
.++.+|..++...+++.+|. +.+| +.|..|++.||+.
T Consensus 47 l~C~agvg~gv~~l~~~ars---------grrIlalDGCp~~Catk~l~~AGv~~D~~l~itdlGikK~~~~D~~~edv~ 117 (135)
T COG4273 47 LSCTAGVGAGVPALVDAARS---------GRRILALDGCPLRCATKCLAEAGVQADVHLTITDLGIKKTYPSDCKDEDVE 117 (135)
T ss_pred heeeecccCCcHHHHHHhhc---------CCceEEecCChHHHHHHHHHHhccceeEEEEehhcccccCCCCCCCHHHHH
Confidence 57888999999999988873 4444 5688999999998
Q ss_pred HHHHHHHHHh
Q 040809 101 QLALKVLRKT 110 (161)
Q Consensus 101 ~la~~al~~~ 110 (161)
+++..+....
T Consensus 118 kv~~~i~e~l 127 (135)
T COG4273 118 KVARTIKEAL 127 (135)
T ss_pred HHHHHHHHHh
Confidence 8877665543
No 60
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=41.75 E-value=36 Score=28.63 Aligned_cols=96 Identities=10% Similarity=0.172 Sum_probs=52.8
Q ss_pred cCCCCceeeEecceEEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHH--Hh------
Q 040809 12 FSPEGRLYQVDYMGCLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAY--AY------ 83 (161)
Q Consensus 12 fsp~Grl~qveyaGVlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~--~~------ 83 (161)
..++|+++-|+|.=+|...+... + .+ ..+.-|++++.+.-++.|..++...+....+..++.|.. ++
T Consensus 216 i~~~Ghl~HIDFG~ilg~~~~~g-~---~~-~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~ 290 (353)
T cd05176 216 LRSTGHMFHIDFGKFLGHAQMFG-S---FK-RDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLN 290 (353)
T ss_pred EcCCCCEEEEeeHHhcCCCcccc-C---CC-CCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 47899999999952554333211 1 11 235667888877655555433321121111112222211 11
Q ss_pred ------CCCc-------------cCCCCCCCHHHHHHHHHHHHHHhhc
Q 040809 84 ------QEPI-------------QDYKDDMTRQEAVQLALKVLRKTMD 112 (161)
Q Consensus 84 ------~~~i-------------~~y~~~mt~eeai~la~~al~~~~~ 112 (161)
+..+ ++++.++|.+||.....+-+..+.+
T Consensus 291 L~~lM~~s~iP~~~~~~~i~~l~~r~~l~~sd~ea~~~f~~lI~~s~~ 338 (353)
T cd05176 291 LLSLMTQSGLPELTGVQDLKYVYDALQPQTTDAEATIFFTRLIESSLG 338 (353)
T ss_pred HHHHHhCCCCcccCCchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 1111 4568999999999988888877764
No 61
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=41.54 E-value=74 Score=20.46 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEEEeCCCCceeEEECCHHHH----HHHHHHhcccCCCC
Q 040809 115 SLTSEKLELAEVFLLPSGKVKYRICSPESL----TMLLENFGVAQPAS 158 (161)
Q Consensus 115 ~~~~~~iei~ii~~~~~g~~~~~~l~~~ei----~~~l~~~~~~~~~~ 158 (161)
..-|++|+|.+++.+++ .+..-+--|.++ +++.+.+.+++.++
T Consensus 12 i~IgddI~itVl~i~gn-qVkiGi~APk~v~I~R~Eiy~~Iq~En~~a 58 (73)
T COG1551 12 IMIGDDIEITVLSIKGN-QVKIGINAPKEVSIHREEIYQRIQEENSKA 58 (73)
T ss_pred EEecCCeEEEEEEEcCC-eEEEeecCChhhhHHHHHHHHHHHHhhhcc
Confidence 45689999999998874 223334455665 34455555555443
No 62
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=40.71 E-value=25 Score=29.61 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=20.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhc
Q 040809 88 QDYKDDMTRQEAVQLALKVLRKTMD 112 (161)
Q Consensus 88 ~~y~~~mt~eeai~la~~al~~~~~ 112 (161)
+.+..++|.+||.....+-+..+.+
T Consensus 315 ~rf~l~~se~eA~~~f~~lI~~s~~ 339 (354)
T cd00895 315 DALRPQDTEADATTYFTRLIESSLG 339 (354)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 4578999999999998888887764
No 63
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=40.65 E-value=1.2e+02 Score=20.92 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhccCCCCC-----CcEEEEEEEeCCCCceeEEE----CCHHHHHHHHHHhcc
Q 040809 98 EAVQLALKVLRKTMDSTSLTS-----EKLELAEVFLLPSGKVKYRI----CSPESLTMLLENFGV 153 (161)
Q Consensus 98 eai~la~~al~~~~~~~~~~~-----~~iei~ii~~~~~g~~~~~~----l~~~ei~~~l~~~~~ 153 (161)
-++.-|+++++.+.++.+... ...-+.+..++..| .+.. =+.+||+.+|..+..
T Consensus 25 ~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg--~~i~~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 25 VALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEG--NYIIVGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred HHHHHHHHHHHHHhccccccccccccCccccceeeccCCC--CEEecCCCCChHHHHHHHHHHHH
Confidence 345566677777776654433 33334444333333 3333 357889999987643
No 64
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=39.77 E-value=2.4e+02 Score=24.00 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHH-HHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCC
Q 040809 93 DMTRQEAVQLALK-VLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQP 156 (161)
Q Consensus 93 ~mt~eeai~la~~-al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~ 156 (161)
+.+-.+.|+...+ |-..+.. ...+|+++-.++...- .|++++|+=|..+.+.+....+
T Consensus 188 d~s~~~viHnlAQ~aHC~AQG-KvGSGFDV~aA~yGS~-----rYrRF~P~lis~lp~~i~~~~~ 246 (459)
T KOG4519|consen 188 DCSDLDVIHNLAQTAHCLAQG-KVGSGFDVSAAVYGSQ-----RYRRFSPELISFLPQVIVTGLP 246 (459)
T ss_pred CchHHHHHHHHHHHHHHHhcC-CccCCcceehhhccce-----eeeeCCHHHHHHHHHHHhccCh
Confidence 4444555544433 3333333 3556667766666543 7999999999888766554433
No 65
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=39.33 E-value=12 Score=28.28 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=41.7
Q ss_pred CceeeEecc---e--EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHH
Q 040809 16 GRLYQVDYM---G--CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARV 74 (161)
Q Consensus 16 Grl~qveya---G--Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~ 74 (161)
.+|++|.++ | .+.+.+..+..-++. .-.+-|-..++++.+++.|..-|...|..+++.
T Consensus 24 d~Ii~Is~~~~~g~~~~~~~~~~~E~~lL~-~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 24 DPIIVISLATSNGDVEFILAEGLDDRKIIR-EFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred CCEEEEEEEeCCCCEEEEEecCCCHHHHHH-HHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 479999998 4 223332222222222 366778889999999999999999999999875
No 66
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=36.63 E-value=1.4e+02 Score=25.73 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 040809 89 DYKDDMTRQEAVQLAL-KVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENF 151 (161)
Q Consensus 89 ~y~~~mt~eeai~la~-~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~ 151 (161)
+|+|+.|++++..|+. ..+++++-.-++.|..- .|.-|+ +.+|..|++.+.+.+
T Consensus 70 RfhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKG---gi~~DP------k~~S~~E~erl~raf 124 (411)
T COG0334 70 RFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKG---GIIVDP------KGLSDGELERLSRAF 124 (411)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCce---eeeCCc------ccCCHHHHHHHHHHH
Confidence 6899999999999988 78888886555555421 112232 458999999887655
No 67
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=36.56 E-value=74 Score=21.45 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHhhccCC--------CCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcc
Q 040809 94 MTRQEAVQLALKVLRKTMDSTS--------LTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGV 153 (161)
Q Consensus 94 mt~eeai~la~~al~~~~~~~~--------~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~ 153 (161)
.+.++ +.-++..|...+.... -..+.+-|.|++++++- ..|.++++|+..+...+.+
T Consensus 34 ~~~e~-l~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~e--VIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 34 PSKEE-LEEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGE--VIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp --HHH-HHHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-S--EEEEE-HHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCc--EEEeCCcHHHHHHHHHHHH
Confidence 34444 4555666665553210 12357889999987632 7799999999998877643
No 68
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=36.11 E-value=91 Score=24.12 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 98 EAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 98 eai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
|+++.+++.|.+.+..|.+.-..++|+||+-++
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~ 54 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGG 54 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecC
Confidence 678999999999988888888999999999875
No 69
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=33.22 E-value=2.2e+02 Score=22.67 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCCceEEecC-ceEEEEeccHHH-----HHHHHHHHHHHHH------HHHHHhCCCccCCCCCCCHHHHHHHHHHHHHHh
Q 040809 43 SAEKMYKIDD-HVACAVAGIMSD-----ANILINTARVQAR------RYAYAYQEPIQDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 43 ~~~KI~~I~~-~i~~~~sG~~~D-----~~~l~~~~r~~~~------~y~~~~~~~i~~y~~~mt~eeai~la~~al~~~ 110 (161)
+.+-...+++ ++.++-+|+.|+ +..+.+.+....+ ....-|+..+..|.++++-.+-+..++.+|...
T Consensus 102 ~lPl~~~~~~~~~l~vHAGi~p~w~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~W~~~l~g~~r~r~~~n~~trm 181 (257)
T cd07422 102 HQPLLHRDPELGILMVHAGIPPQWSIEQALKLAREVEAALRGPNYREFLKNMYGNEPDRWSDDLTGIDRLRYIVNAFTRM 181 (257)
T ss_pred hCCCEEEECCccEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhhCCCCcccCcccCccHHHHHHHHHhhce
Confidence 4566666654 899999999985 4444444443332 122346666678999999999899999888753
No 70
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=32.67 E-value=16 Score=28.96 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=22.7
Q ss_pred EecCceEEEEeccHHHHHHHHHHHHHHHHH
Q 040809 49 KIDDHVACAVAGIMSDANILINTARVQARR 78 (161)
Q Consensus 49 ~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~ 78 (161)
-||+.+.|+..|++||.+++-+ +|...+.
T Consensus 154 iID~~vLCVHGGLSPdirtlDq-ir~i~R~ 182 (306)
T KOG0373|consen 154 IIDEKVLCVHGGLSPDIRTLDQ-IRLIERN 182 (306)
T ss_pred HhcCcEEEEcCCCCccceeHHH-HHhHHhh
Confidence 4899999999999999998744 5554443
No 71
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=31.86 E-value=1.4e+02 Score=18.94 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 94 MTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 94 mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
|+..+.+.-|..|++...- |..+ +. ++.|+ -++.|..=+-.++..|+..++
T Consensus 1 Mt~~~~L~~a~~A~h~L~t-----G~~v-vs-v~~dg-rsV~Yt~a~i~~L~~yI~~L~ 51 (68)
T PF02831_consen 1 MTTQEQLAEARAAYHDLLT-----GQRV-VS-VQGDG-RSVTYTQANIGDLRAYIQQLE 51 (68)
T ss_dssp --CHHHHHHHHHHHHHHHC-----S-SE-EE-EEETT-EEEEEEGGGHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHh-----CCce-eE-eecCC-eEEEEecCCHHHHHHHHHHHH
Confidence 6667777888888887652 3222 11 67765 456777777777788877664
No 72
>PRK08868 flagellar protein FlaG; Provisional
Probab=31.40 E-value=1.1e+02 Score=22.46 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=28.2
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcc
Q 040809 118 SEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGV 153 (161)
Q Consensus 118 ~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~ 153 (161)
.+.+-|.||+++.+. ..|.++++|+..+++.+.+
T Consensus 99 tgr~VVkViD~~T~E--VIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGD--IIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCc--eeeeCCCHHHHHHHHHHHH
Confidence 347789999987644 7899999999999998874
No 73
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=31.06 E-value=63 Score=18.35 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 040809 94 MTRQEAVQLALKVLRKTMD 112 (161)
Q Consensus 94 mt~eeai~la~~al~~~~~ 112 (161)
-|++||+..+..+|...++
T Consensus 29 ~t~eea~~~~~eal~~~le 47 (48)
T PF03681_consen 29 DTLEEALENAKEALELWLE 47 (48)
T ss_dssp SSHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 3789999999999887654
No 74
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=30.89 E-value=25 Score=18.84 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=6.5
Q ss_pred CcccCCCCce
Q 040809 9 TTVFSPEGRL 18 (161)
Q Consensus 9 ~~~fsp~Grl 18 (161)
.-.|||||+-
T Consensus 13 ~p~~SpDGk~ 22 (39)
T PF07676_consen 13 SPAWSPDGKY 22 (39)
T ss_dssp EEEE-TTSSE
T ss_pred CEEEecCCCE
Confidence 3469999983
No 75
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.85 E-value=1.9e+02 Score=23.30 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=41.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 040809 88 QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147 (161)
Q Consensus 88 ~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~ 147 (161)
..|.+.++++++.++...++..+....+.-+....+..+++.-. ++.+|-..+|+.+
T Consensus 140 ~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d---~~~rl~kkDie~L 196 (293)
T COG4079 140 DNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVD---PVLRLVKKDIETL 196 (293)
T ss_pred hhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcC---HHHHHHHHHHHHH
Confidence 56899999999999888888877755556667888888876543 3556655665443
No 76
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=30.79 E-value=34 Score=19.99 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.8
Q ss_pred ccCCCCceeeEecc
Q 040809 11 VFSPEGRLYQVDYM 24 (161)
Q Consensus 11 ~fsp~Grl~qveya 24 (161)
..+|||+...|.|.
T Consensus 33 y~~pdG~~~~V~Y~ 46 (52)
T PF00379_consen 33 YIDPDGQTRTVTYV 46 (52)
T ss_pred EECCCCCEEEEEEE
Confidence 35799999999983
No 77
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=30.66 E-value=52 Score=27.77 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=52.7
Q ss_pred cCCCCceeeEecceEEEEEcccCCCCcccCCCCCceEEecCceEEEE----ec---cHHHHHHHHHHHHHHHHHHHH---
Q 040809 12 FSPEGRLYQVDYMGCLVGENNVTSKLLQTSTSAEKMYKIDDHVACAV----AG---IMSDANILINTARVQARRYAY--- 81 (161)
Q Consensus 12 fsp~Grl~qveyaGVlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~----sG---~~~D~~~l~~~~r~~~~~y~~--- 81 (161)
.+++|+++-|+|.=+|...+ .++-+ . ....-|++++.+.-++ +| ..+-.+.++..+=...+.|..
T Consensus 222 i~~~G~l~HIDFG~ilg~~~---~~~~~-~-~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil 296 (362)
T cd05173 222 VRKNGQLFHIDFGHILGNFK---SKFGI-K-RERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFI 296 (362)
T ss_pred ECCCCCEEEEehHHhhccCC---cccCC-C-CCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHH
Confidence 46899999999952554322 12211 1 2345678888764322 23 223333333332222222211
Q ss_pred -----HhCCCc-------------cCCCCCCCHHHHHHHHHHHHHHhhc
Q 040809 82 -----AYQEPI-------------QDYKDDMTRQEAVQLALKVLRKTMD 112 (161)
Q Consensus 82 -----~~~~~i-------------~~y~~~mt~eeai~la~~al~~~~~ 112 (161)
--...+ +++..++|.+||...-.+-+..+..
T Consensus 297 ~l~~lM~~s~ip~~~~~~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~ 345 (362)
T cd05173 297 TLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFRQKFDEALR 345 (362)
T ss_pred HHHHHHhcCCCccccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 111111 4678999999999998888888875
No 78
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=30.50 E-value=32 Score=24.27 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=16.3
Q ss_pred CCCcccCCCCceeeEecce
Q 040809 7 RQTTVFSPEGRLYQVDYMG 25 (161)
Q Consensus 7 ~~~~~fsp~Grl~qveyaG 25 (161)
.+.-+|||||..+-..|--
T Consensus 70 tHvHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 70 THVHVFSPDGSWLSFTYND 88 (122)
T ss_pred ccceEECCCCCEEEEEecc
Confidence 4567899999999999984
No 79
>PRK02487 hypothetical protein; Provisional
Probab=30.16 E-value=2.2e+02 Score=20.83 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEE
Q 040809 90 YKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVF 127 (161)
Q Consensus 90 y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~ 127 (161)
..+.+|+++|..++..++..+.+. +..+.|+|+.
T Consensus 19 ~~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~ 52 (163)
T PRK02487 19 VFPHFDNDDAWQLGSLLVELARER----GLPIAIDITL 52 (163)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE
Confidence 357899999999999999998753 5689999984
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.75 E-value=70 Score=29.74 Aligned_cols=38 Identities=39% Similarity=0.531 Sum_probs=29.3
Q ss_pred ccCCCCceeeEecc-------------------e----EEEEEcccCCCCcccCCCCCceEE
Q 040809 11 VFSPEGRLYQVDYM-------------------G----CLVGENNVTSKLLQTSTSAEKMYK 49 (161)
Q Consensus 11 ~fsp~Grl~qveya-------------------G----Vlaadkr~~~~l~~~~~~~~KI~~ 49 (161)
-+|||||++.|.-- | |+..|-...+++.+.+ +.+|-.+
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg-SADKnVK 575 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG-SADKNVK 575 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec-cCCCceE
Confidence 48999999998865 6 8888887777877766 5666555
No 81
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.97 E-value=35 Score=19.13 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=11.0
Q ss_pred CcccCCCCceeeEec
Q 040809 9 TTVFSPEGRLYQVDY 23 (161)
Q Consensus 9 ~~~fsp~Grl~qvey 23 (161)
+++--.||++.|+|-
T Consensus 18 V~iiiqdG~vvQIe~ 32 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEK 32 (38)
T ss_pred EEEEEECCEEEEEEh
Confidence 444556999999983
No 82
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=27.18 E-value=75 Score=18.13 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 96 RQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 96 ~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+|.|+..++.+++....++ + ....|+..|+.+++++
T Consensus 1 LE~ai~~iI~vFhkYa~~~---------------G----d~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 1 LEKAIETIIDVFHKYAGKE---------------G----DKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHTSS---------------S----STTSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC---------------C----CCCeEcHHHHHHHHHH
Confidence 5788999999999988652 1 1346777788777753
No 83
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.99 E-value=49 Score=27.43 Aligned_cols=16 Identities=50% Similarity=0.889 Sum_probs=12.1
Q ss_pred CcccCCCCc-eeeEecc
Q 040809 9 TTVFSPEGR-LYQVDYM 24 (161)
Q Consensus 9 ~~~fsp~Gr-l~qveya 24 (161)
--+|||||+ ||.-|..
T Consensus 118 HGvfs~dG~~LYATEnd 134 (366)
T COG3490 118 HGVFSPDGRLLYATEND 134 (366)
T ss_pred ccccCCCCcEEEeecCC
Confidence 358999999 6666665
No 84
>PRK07738 flagellar protein FlaG; Provisional
Probab=26.75 E-value=1.3e+02 Score=21.23 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=27.9
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcc
Q 040809 118 SEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGV 153 (161)
Q Consensus 118 ~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~ 153 (161)
.+.+-|.||+++++. ..|.++++++-.++.++.+
T Consensus 74 t~~~vVkVvD~~T~E--VIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 74 LNEYYVQVVDERTNE--VIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CCcEEEEEEECCCCe--eeeeCCCHHHHHHHHHHHH
Confidence 368889999987643 7899999999999887754
No 85
>PRK08452 flagellar protein FlaG; Provisional
Probab=26.43 E-value=2.4e+02 Score=20.02 Aligned_cols=34 Identities=12% Similarity=-0.067 Sum_probs=27.1
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcc
Q 040809 118 SEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGV 153 (161)
Q Consensus 118 ~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~ 153 (161)
.+.+-|.|++++++- ..|.++++|+-.+...+.+
T Consensus 81 ~~~~vVkVvD~~T~e--VIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGK--VIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCc--eeeeCCCHHHHHHHHHHHH
Confidence 347888999987643 7899999999998887654
No 86
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=26.20 E-value=32 Score=20.84 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.4
Q ss_pred cccCCCCceeeEecc
Q 040809 10 TVFSPEGRLYQVDYM 24 (161)
Q Consensus 10 ~~fsp~Grl~qveya 24 (161)
.+|.|+|++..++..
T Consensus 2 ~v~lpdG~~~~~~~g 16 (60)
T PF02824_consen 2 RVYLPDGSIKELPEG 16 (60)
T ss_dssp EEEETTSCEEEEETT
T ss_pred EEECCCCCeeeCCCC
Confidence 578899999988775
No 87
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=25.22 E-value=49 Score=15.12 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=10.1
Q ss_pred CcccCCCCceeeEe
Q 040809 9 TTVFSPEGRLYQVD 22 (161)
Q Consensus 9 ~~~fsp~Grl~qve 22 (161)
...|.|+|+|.+..
T Consensus 5 ~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 5 WKFYYENGKLKSEG 18 (22)
T ss_pred EEEEeCCCCEEEEE
Confidence 35688999887654
No 88
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=25.01 E-value=1.8e+02 Score=21.66 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=23.5
Q ss_pred CcEEEEEEEeCCCCceeEEE---CCHHHHHHHHHHhcc
Q 040809 119 EKLELAEVFLLPSGKVKYRI---CSPESLTMLLENFGV 153 (161)
Q Consensus 119 ~~iei~ii~~~~~g~~~~~~---l~~~ei~~~l~~~~~ 153 (161)
.+--|.+++++ |.+.|.. |+++|+++.++-+.+
T Consensus 124 ~~SaiiVlDK~--G~V~F~k~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 124 ESSAIIVLDKQ--GKVQFVKEGALSPAEVQQVIALLKK 159 (160)
T ss_pred CCceEEEEcCC--ccEEEEECCCCCHHHHHHHHHHHhc
Confidence 34457788877 4555554 999999999876643
No 89
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=24.31 E-value=1e+02 Score=19.87 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred eEEECCHHHHHHHHHHhcc
Q 040809 135 KYRICSPESLTMLLENFGV 153 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~~~ 153 (161)
....|+++|.+++|++++-
T Consensus 11 kH~ils~eE~~~lL~~y~i 29 (74)
T PF01191_consen 11 KHEILSEEEKKELLKKYNI 29 (74)
T ss_dssp EEEEE-HHHHHHHHHHTT-
T ss_pred CeEEcCHHHHHHHHHHhCC
Confidence 7899999999999998854
No 90
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=23.52 E-value=62 Score=17.27 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=15.2
Q ss_pred EEECCHHHHHHHHHHhccc
Q 040809 136 YRICSPESLTMLLENFGVA 154 (161)
Q Consensus 136 ~~~l~~~ei~~~l~~~~~~ 154 (161)
++=+.++||+.+|+.+..+
T Consensus 15 ~rGY~~~eVD~fLd~v~~~ 33 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRVADD 33 (34)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4557899999999988653
No 91
>PF14232 DUF4334: Domain of unknown function (DUF4334)
Probab=23.08 E-value=1.9e+02 Score=17.77 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=31.9
Q ss_pred cCCCCceeeEecce-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 12 FSPEGRLYQVDYMG-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 12 fsp~Grl~qveyaG-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
..|..+|-.+||-| |=|+-- ++...-.+..-+|+++..+++-..-++
T Consensus 2 ~~~~A~Lr~~~frG~vsAtMv------YD~~PI~D~FR~Vd~~tv~G~Md~k~~ 49 (59)
T PF14232_consen 2 RKGEARLRMVEFRGKVSATMV------YDDQPIIDHFRKVDDDTVLGAMDGKGD 49 (59)
T ss_pred CCCceEEEEEEECCEEEEEEE------cCCCcccceEEEEcCCEEEEEeccCCC
Confidence 46788999999999 544422 111224577889999998887655544
No 92
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=23.07 E-value=94 Score=20.34 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=16.8
Q ss_pred eEEECCHHHHHHHHHHhcc
Q 040809 135 KYRICSPESLTMLLENFGV 153 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~~~ 153 (161)
....|+++|.+++|++++-
T Consensus 14 kH~iLs~eE~~~lL~~y~i 32 (79)
T PRK09570 14 EHEILSEEEAKKLLKEYGI 32 (79)
T ss_pred CeEECCHHHHHHHHHHcCC
Confidence 6889999999999998853
No 93
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=22.52 E-value=22 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=20.1
Q ss_pred CCCCCCCCcccCC---------CCceeeEecc-eEEEEEcccC
Q 040809 2 SRRYDRQTTVFSP---------EGRLYQVDYM-GCLVGENNVT 34 (161)
Q Consensus 2 ~~~y~~~~~~fsp---------~Grl~qveya-GVlaadkr~~ 34 (161)
..+|-.+...|-| +|..|+|+|- ||+|=-.|..
T Consensus 45 AksYl~dp~~f~~G~~Y~i~~~~~~~F~V~ylnGVfAWG~r~~ 87 (102)
T PF08838_consen 45 AKSYLLDPSDFRPGEIYRIEGDPEEYFKVDYLNGVFAWGYRQN 87 (102)
T ss_dssp HHHCCS-GGGS-TT-EEEETTCCCEEEEEEEEETTEEEEEETT
T ss_pred HHHHhCChhhccCCCEEEecCCCCceEEEEEEeeEEEEEeecC
Confidence 3456666666666 3557778887 6777666663
No 94
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.12 E-value=74 Score=26.26 Aligned_cols=15 Identities=53% Similarity=0.959 Sum_probs=11.9
Q ss_pred cccCCCCc-eeeEecc
Q 040809 10 TVFSPEGR-LYQVDYM 24 (161)
Q Consensus 10 ~~fsp~Gr-l~qveya 24 (161)
-+|||||+ ||..|-.
T Consensus 56 g~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 56 GVFSPDGRLLYTTEND 71 (305)
T ss_pred EEEcCCCCEEEEeccc
Confidence 47999999 7777765
No 95
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=21.95 E-value=1.3e+02 Score=21.28 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=26.5
Q ss_pred CCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 118 SEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 118 ~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
-+.+-|.|++++++- ..|..+|+++-++++.+.
T Consensus 77 lg~~vVkI~d~~Tge--VIRqIPpee~L~l~~r~~ 109 (120)
T COG1334 77 LGELVVKIIDKDTGE--VIRQIPPEEALELAARMR 109 (120)
T ss_pred cCcEEEEEEECCCCc--chhhCChHHHHHHHHHHH
Confidence 346788889887643 788999999999988775
No 96
>PRK04081 hypothetical protein; Provisional
Probab=21.68 E-value=1.3e+02 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.8
Q ss_pred eEEECCHHHHHHHHHHh
Q 040809 135 KYRICSPESLTMLLENF 151 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~ 151 (161)
.-|+|+.+|+++|+++-
T Consensus 82 ~ER~LS~eE~dkLi~eE 98 (207)
T PRK04081 82 TERVLSQEEIDKLIKEE 98 (207)
T ss_pred cccccCHHHHHHHHHHH
Confidence 67899999999999754
No 97
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=21.47 E-value=44 Score=19.87 Aligned_cols=13 Identities=54% Similarity=1.081 Sum_probs=10.2
Q ss_pred CcccCCCCceeeE
Q 040809 9 TTVFSPEGRLYQV 21 (161)
Q Consensus 9 ~~~fsp~Grl~qv 21 (161)
+-+|+|+|+++..
T Consensus 37 ~iv~~~~g~~~~f 49 (51)
T PF00319_consen 37 LIVFSPDGKLYTF 49 (51)
T ss_dssp EEEEETTSEEEEE
T ss_pred EEEECCCCCEEEe
Confidence 4679999998753
No 98
>PRK07105 pyridoxamine kinase; Validated
Probab=20.73 E-value=98 Score=24.51 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=25.2
Q ss_pred CCCceEEecCceEEEEeccHHHHHHHHH
Q 040809 43 SAEKMYKIDDHVACAVAGIMSDANILIN 70 (161)
Q Consensus 43 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~ 70 (161)
..+||-.++|+.+.+.+|+.+|...+..
T Consensus 3 ~~~~vl~~~d~~~~G~aG~~adi~~~~~ 30 (284)
T PRK07105 3 PVKRVAAIHDLSGFGRVALTASIPIMSS 30 (284)
T ss_pred CCCeEEEEecccccceehHhhHHHHHHH
Confidence 3569999999999999999999998876
No 99
>PRK05578 cytidine deaminase; Validated
Probab=20.59 E-value=3.2e+02 Score=19.36 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 94 MTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 94 mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
|+.++++..|..++..+.- .++...+=.++.+.++
T Consensus 1 ~~~~~L~~~a~~~~~~ay~--PyS~f~Vgaa~~~~~G 35 (131)
T PRK05578 1 MDWKELIEAAIEASEKAYA--PYSKFPVGAALLTDDG 35 (131)
T ss_pred CCHHHHHHHHHHHHHhcCC--CcCCCceEEEEEeCCC
Confidence 5678899999999988774 4677777778888765
No 100
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=20.10 E-value=1.5e+02 Score=19.55 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 96 RQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 96 ~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
-+|++..|.-|+.... +.++-.+++|.+...++
T Consensus 36 qqEvLnvA~MAvQT~Q--~~L~lNGv~V~v~~~~~ 68 (82)
T PF11773_consen 36 QQEVLNVAQMAVQTGQ--DHLSLNGVEVQVERTQK 68 (82)
T ss_pred HHHHHHHHHHHHHhCc--ceEEEcCeEEEEEEcCC
Confidence 3789999999999755 46788899999998765
No 101
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=20.03 E-value=70 Score=27.68 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-hccCCC---CCCcEEEEEEEeC
Q 040809 90 YKDDMTRQEAVQLALKVLRKT-MDSTSL---TSEKLELAEVFLL 129 (161)
Q Consensus 90 y~~~mt~eeai~la~~al~~~-~~~~~~---~~~~iei~ii~~~ 129 (161)
||+++|+|+||.|..+.=--+ +-||.. +..++-+.|-+..
T Consensus 215 YKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPP 258 (483)
T KOG1930|consen 215 YKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPP 258 (483)
T ss_pred cCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCC
Confidence 699999999998866531111 112222 2346666665543
Done!