Query 040809
Match_columns 161
No_of_seqs 126 out of 1129
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_C 20S proteasome; cell cy 100.0 1.1E-39 3.6E-44 258.7 17.2 157 1-158 1-247 (261)
2 1iru_G 20S proteasome; cell cy 100.0 2.8E-38 9.7E-43 249.7 14.7 151 1-154 3-242 (254)
3 1ryp_C 20S proteasome; multica 100.0 8.6E-38 2.9E-42 245.3 16.8 151 2-153 2-243 (244)
4 1j2p_A Alpha-ring, proteasome 100.0 3.3E-38 1.1E-42 248.1 13.6 152 1-158 4-243 (246)
5 3h4p_A Proteasome subunit alph 100.0 1.3E-38 4.4E-43 253.1 10.7 150 3-158 10-247 (264)
6 1iru_B 20S proteasome; cell cy 100.0 2.2E-37 7.5E-42 241.5 15.6 144 2-152 2-233 (233)
7 1ryp_B 20S proteasome; multica 100.0 2.7E-37 9.4E-42 243.4 15.7 149 1-151 1-250 (250)
8 1ryp_D 20S proteasome; multica 100.0 3.9E-37 1.3E-41 241.3 16.4 145 4-155 1-238 (241)
9 1ryp_A 20S proteasome; multica 100.0 1.8E-37 6.1E-42 243.4 14.1 145 3-154 1-242 (243)
10 1iru_A 20S proteasome; cell cy 100.0 4.3E-37 1.5E-41 241.6 16.1 147 3-154 7-245 (246)
11 1iru_D 20S proteasome; cell cy 100.0 2E-37 7E-42 243.9 14.1 149 1-159 1-240 (248)
12 1iru_E 20S proteasome; cell cy 100.0 4.5E-37 1.5E-41 240.9 15.8 145 1-151 3-241 (241)
13 1yar_A Proteasome alpha subuni 100.0 2.1E-37 7.4E-42 241.5 13.0 142 1-148 3-233 (233)
14 1ryp_E 20S proteasome; multica 100.0 1.7E-36 6E-41 237.6 15.6 146 6-157 1-241 (242)
15 3nzj_F Proteasome component C1 100.0 4.3E-36 1.5E-40 241.1 15.2 142 3-147 6-239 (288)
16 1iru_F 20S proteasome; cell cy 100.0 1.8E-36 6.1E-41 240.5 12.3 145 1-152 1-237 (263)
17 1ryp_G 20S proteasome; multica 100.0 3.2E-35 1.1E-39 230.9 14.3 147 3-153 2-240 (244)
18 1ryp_F 20S proteasome; multica 100.0 6.7E-36 2.3E-40 233.1 8.1 138 3-148 3-233 (233)
19 3h4p_a Proteasome subunit beta 99.9 1.1E-26 3.9E-31 179.5 15.4 137 18-159 4-210 (219)
20 1q5q_A Proteasome alpha-type s 99.9 6.9E-27 2.4E-31 185.0 8.6 139 10-158 5-242 (259)
21 1iru_L 20S proteasome; cell cy 99.9 4.1E-26 1.4E-30 174.2 12.3 133 19-156 4-204 (204)
22 1j2q_H Proteasome beta subunit 99.9 2.8E-25 9.6E-30 169.4 14.5 130 18-152 3-201 (202)
23 1yar_H Proteasome beta subunit 99.9 1.7E-24 5.8E-29 167.0 16.0 133 16-152 9-208 (217)
24 1ryp_L 20S proteasome; multica 99.9 3.6E-25 1.2E-29 170.0 12.1 136 18-158 3-207 (212)
25 3unf_N Proteasome subunit beta 99.9 1.9E-25 6.6E-30 169.8 8.6 128 19-149 4-198 (199)
26 1iru_H 20S proteasome; cell cy 99.9 4.7E-25 1.6E-29 168.5 9.9 130 18-150 3-200 (205)
27 3nzj_K Proteasome component PR 99.9 1.3E-24 4.5E-29 174.2 12.7 133 18-155 78-279 (287)
28 3mi0_A Proteasome subunit alph 99.9 4.4E-24 1.5E-28 168.0 12.8 125 25-159 38-245 (248)
29 3unf_H Proteasome subunit beta 99.9 9.4E-24 3.2E-28 164.8 10.7 122 19-145 4-192 (234)
30 1iru_J 20S proteasome; cell cy 99.9 2.4E-22 8.3E-27 153.4 14.7 119 12-130 4-194 (205)
31 1ryp_K 20S proteasome; multica 99.9 1.9E-22 6.4E-27 153.2 12.9 118 19-141 5-194 (198)
32 1iru_M 20S proteasome; cell cy 99.9 4.7E-22 1.6E-26 152.6 15.0 115 16-130 10-202 (213)
33 1ryp_J 20S proteasome; multica 99.9 5.8E-22 2E-26 151.2 15.3 119 11-130 3-193 (204)
34 1q5q_H Proteasome beta-type su 99.9 3.7E-22 1.3E-26 155.7 14.4 135 18-157 3-223 (235)
35 2jay_A Proteasome; hydrolase; 99.9 3.4E-22 1.2E-26 160.5 14.0 124 25-154 68-277 (291)
36 1ryp_I 20S proteasome; multica 99.9 2.4E-22 8.1E-27 155.5 12.1 113 18-130 3-182 (222)
37 1ryp_M 20S proteasome; multica 99.9 5.8E-22 2E-26 153.3 13.4 115 16-130 10-211 (222)
38 1q5r_H Proteasome beta-type su 99.9 1.2E-21 4E-26 157.6 15.5 135 18-157 68-288 (294)
39 3nzj_H Proteasome component PU 99.9 9E-22 3.1E-26 155.9 14.5 114 17-130 31-211 (261)
40 1ryp_N 20S proteasome; multica 99.9 1.6E-22 5.4E-27 157.4 9.6 128 16-147 9-217 (233)
41 1iru_I 20S proteasome; cell cy 99.9 7.5E-22 2.6E-26 153.9 13.1 119 18-141 3-188 (234)
42 1iru_N 20S proteasome; cell cy 99.9 2E-22 6.7E-27 155.4 9.7 127 16-147 9-208 (219)
43 1ryp_H 20S proteasome; multica 99.9 2.3E-21 7.9E-26 148.0 13.9 114 16-130 10-191 (205)
44 1g0u_M Proteasome component PR 99.9 3.7E-22 1.3E-26 158.4 9.3 126 18-147 44-250 (266)
45 1iru_K 20S proteasome; cell cy 99.9 2.1E-21 7.2E-26 147.7 13.0 117 19-140 5-192 (201)
46 1g3k_A ATP-dependent protease 99.7 3.5E-17 1.2E-21 121.9 5.7 107 18-127 3-173 (174)
47 2z3b_A ATP-dependent protease 99.7 2.6E-16 8.8E-21 118.0 8.3 108 16-126 6-179 (180)
48 1m4y_A ATP-dependent protease 99.6 3.5E-16 1.2E-20 116.1 5.3 105 19-126 4-171 (171)
49 3fpw_A HBPS, extracellular HAE 43.7 65 0.0022 23.6 6.1 46 90-140 61-106 (192)
50 3hvz_A Uncharacterized protein 39.8 10 0.00034 23.7 1.0 20 5-24 4-23 (78)
51 2a2l_A Unknown; structural gen 37.4 49 0.0017 22.9 4.5 44 92-140 10-53 (145)
52 2hc5_A ORF 99, hypothetical pr 36.1 44 0.0015 22.5 3.9 58 92-152 33-98 (117)
53 3rj2_X ORF158L protein, putati 32.8 8.8 0.0003 26.3 -0.1 17 5-21 55-71 (138)
54 3a1q_C Ubiquitin interaction m 25.3 54 0.0019 17.9 2.3 16 92-107 2-17 (45)
55 2b3g_B Cellular tumor antigen 23.8 42 0.0015 16.3 1.5 13 138-150 12-24 (28)
56 4h62_V Mediator of RNA polymer 22.6 55 0.0019 16.2 1.8 17 135-151 5-21 (31)
57 4ayb_H DNA-directed RNA polyme 21.8 77 0.0026 20.0 2.9 19 135-153 19-37 (84)
58 1eik_A RNA polymerase subunit 21.5 93 0.0032 19.3 3.2 19 135-153 13-31 (77)
59 1hmj_A RPB5, protein (subunit 21.2 70 0.0024 20.0 2.5 19 135-153 11-29 (78)
60 1egw_A MADS box transcription 21.2 28 0.00095 21.7 0.7 39 116-158 37-75 (77)
61 2lta_A De novo designed protei 26.0 21 0.00072 22.7 0.0 24 137-160 58-81 (110)
No 1
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.1e-39 Score=258.75 Aligned_cols=157 Identities=47% Similarity=0.740 Sum_probs=143.0
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|.++||+++|+||||||||||||| | |||+|+|.++++++.++..+|||+|++||+|++||+.
T Consensus 1 m~~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~ 80 (261)
T 1iru_C 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGIT 80 (261)
T ss_dssp -CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECH
T ss_pred CCCccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcH
Confidence 889999999999999999999999 6 9999999999999988669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
+|++.|++++|.+++.|++++++++
T Consensus 81 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (261)
T 1iru_C 81 SDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWK 160 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeee
Confidence 9999999999999999999999887
Q ss_pred ----------------cCCCC-CCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 ----------------QDYKD-DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ----------------~~y~~-~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.|++ +||++||++++++||..+++++..++++++|++|++++. ...|++|+++||++++..
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~-~~~~~~l~~~ei~~~l~~ 239 (261)
T 1iru_C 161 ATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG-KTVIRVLKQKEVEQLIKK 239 (261)
T ss_dssp EEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS-SCEEEECCHHHHHHHHHH
T ss_pred eEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC-eeeEEECCHHHHHHHHHH
Confidence 35789 999999999999999999999899999999999999752 224999999999999999
Q ss_pred hcccCCCC
Q 040809 151 FGVAQPAS 158 (161)
Q Consensus 151 ~~~~~~~~ 158 (161)
+.+..+++
T Consensus 240 ~~~~~~~~ 247 (261)
T 1iru_C 240 HEEEEAKA 247 (261)
T ss_dssp HHTTTTTT
T ss_pred HHhchhhh
Confidence 95444433
No 2
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.8e-38 Score=249.66 Aligned_cols=151 Identities=28% Similarity=0.403 Sum_probs=138.7
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|.++||+++|+|||+||||||||| | |||+|+|.++++++++ +.+|||+|++||+|++||+.
T Consensus 3 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~ 81 (254)
T 1iru_G 3 IGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLL 81 (254)
T ss_dssp CCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTT-TTCCEEEEETTEEEEEEECH
T ss_pred cccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcC-cCCcEEEECCCEEEEEecCh
Confidence 568999999999999999999999 5 9999999999999974 88999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
+|++.|++++|.+++.|+++|+++|
T Consensus 82 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 161 (254)
T 1iru_G 82 ADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW 161 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeee
Confidence 9999999999999999999999988
Q ss_pred ----------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHh
Q 040809 88 ----------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENF 151 (161)
Q Consensus 88 ----------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~ 151 (161)
+.|+++||++||++++++||..+++++..++++++|++|+++.+| .|++++++||+++++.+
T Consensus 162 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g--~~~~l~~~~i~~~~~~~ 239 (254)
T 1iru_G 162 GCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNG--RHEIVPKDIREEAEKYA 239 (254)
T ss_dssp EEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTT--CCEECCHHHHHHHHHHH
T ss_pred eEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCC--CeEECCHHHHHHHHHHH
Confidence 357899999999999999999999887678999999999987443 59999999999999877
Q ss_pred ccc
Q 040809 152 GVA 154 (161)
Q Consensus 152 ~~~ 154 (161)
.+.
T Consensus 240 ~~~ 242 (254)
T 1iru_G 240 KES 242 (254)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 3
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=8.6e-38 Score=245.28 Aligned_cols=151 Identities=52% Similarity=0.806 Sum_probs=138.3
Q ss_pred CCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHH
Q 040809 2 SRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMS 63 (161)
Q Consensus 2 ~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~ 63 (161)
+++||+++|+||||||||||||| | |||+|+|.++++++.+++.+|||+|++||+|++||+.+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~a 81 (244)
T 1ryp_C 2 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTA 81 (244)
T ss_dssp CGGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHH
T ss_pred CCccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHH
Confidence 35899999999999999999999 5 89999999999998556899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------------------------------------------------------
Q 040809 64 DANILINTARVQARRYAYAYQEPI-------------------------------------------------------- 87 (161)
Q Consensus 64 D~~~l~~~~r~~~~~y~~~~~~~i-------------------------------------------------------- 87 (161)
|++.|++++|.+++.|++++++++
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (244)
T 1ryp_C 82 DAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKA 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeE
Confidence 999999999999999999999887
Q ss_pred ---------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEE--eCCCCceeEEECCHHHHHHHHHH
Q 040809 88 ---------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVF--LLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ---------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~--~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.|+++||++||++++++||..+++++.+++++++|++|+ +++. ...|++|+++||++++++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~-~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 162 ISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG-EVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS-SCEEEECCHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC-ceeEEECCHHHHHHHHHH
Confidence 3589999999999999999999999877789999999999 8752 113999999999999998
Q ss_pred hcc
Q 040809 151 FGV 153 (161)
Q Consensus 151 ~~~ 153 (161)
+..
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 753
No 4
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.3e-38 Score=248.09 Aligned_cols=152 Identities=37% Similarity=0.627 Sum_probs=138.5
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|+++||+++|+|||||||+||||| | |||+|+|.++++.+. ++.+|||+|++||+|++||+.
T Consensus 4 ~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~-~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEK-DTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCG-GGCCSEEECSSSEEEEEEECH
T ss_pred cccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCcccccc-CccCcEEEECCCEEEEEeEcc
Confidence 457999999999999999999999 5 899999999998774 489999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
+|++.|++++|.+++.|++++++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~gp~Ly~idp~G~~~~~~~~ 162 (246)
T 1j2p_A 83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKAT 162 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESSSEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEECCCCEEEEECCCceEEeeeEE
Confidence 9999999999999999999999877
Q ss_pred --------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEE-eCCCCceeEEECCHHHHHHHHHHhc
Q 040809 88 --------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVF-LLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 88 --------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~-~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
+.|+++||++||++++++||..++++ ..++++++|++|+ +++ .|++++++||++++.++.
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~----~~~~l~~~ei~~~~~~~~ 237 (246)
T 1j2p_A 163 AIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDR----TFKEVSPEELKPYVERAN 237 (246)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTC----CCEECCHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCC----ceEECCHHHHHHHHHHHH
Confidence 35889999999999999999999998 8899999999999 643 599999999999999986
Q ss_pred ccCCCC
Q 040809 153 VAQPAS 158 (161)
Q Consensus 153 ~~~~~~ 158 (161)
+++.+.
T Consensus 238 ~~~~~~ 243 (246)
T 1j2p_A 238 ERIREL 243 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
No 5
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-38 Score=253.06 Aligned_cols=150 Identities=38% Similarity=0.676 Sum_probs=132.3
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
.+||+++|+|||+||||||||| | |||+|+|.++++... ++.+|||+|++||+|++||+.+|
T Consensus 10 ~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~-~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 10 SAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKI-RSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp ------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCT-TTCCCEEEEETTEEEEEEECSHH
T ss_pred cccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCcccc-CccccEEEecCcEEEEeccchHH
Confidence 7899999999999999999999 5 999999999987654 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.|++++|.+++.|++.|++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~a 168 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATA 168 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEE
Confidence 99999999999999999999988
Q ss_pred -------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhccc
Q 040809 88 -------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVA 154 (161)
Q Consensus 88 -------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~ 154 (161)
+.|+++||++||++++++||..++++ .++++++|++|++++. .|++|+++||+++++++.+.
T Consensus 169 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~---~~~~l~~~ei~~~~~~~~~~ 243 (264)
T 3h4p_A 169 IGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDA---QFKKIPVEEIKKLIEKVKKK 243 (264)
T ss_dssp ESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTT---EEEECCTTTTGGGTTTTTTS
T ss_pred ECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCC---cEEECCHHHHHHHHHHHHHh
Confidence 35899999999999999999999986 7999999999998754 69999999999999988666
Q ss_pred CCCC
Q 040809 155 QPAS 158 (161)
Q Consensus 155 ~~~~ 158 (161)
.+++
T Consensus 244 ~~~~ 247 (264)
T 3h4p_A 244 LNEE 247 (264)
T ss_dssp SSCC
T ss_pred hhcc
Confidence 5544
No 6
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.2e-37 Score=241.49 Aligned_cols=144 Identities=28% Similarity=0.514 Sum_probs=133.2
Q ss_pred CCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHH
Q 040809 2 SRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMS 63 (161)
Q Consensus 2 ~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~ 63 (161)
+++||+++|+||||||||||||| | |||+|+|.++++... ++.+||++|++||+|++||+.+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~-~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDE-RSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCS-TTCCSSEESSSSEEEEEEECHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCcccccc-ccCCeEEEECCCEEEEEEEccH
Confidence 47899999999999999999999 5 899999999776654 4889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------------------------------------------------------
Q 040809 64 DANILINTARVQARRYAYAYQEPI-------------------------------------------------------- 87 (161)
Q Consensus 64 D~~~l~~~~r~~~~~y~~~~~~~i-------------------------------------------------------- 87 (161)
|++.|++++|.+++.|++++++++
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEE
Confidence 999999999999999999999887
Q ss_pred --------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 88 --------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 88 --------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
+.|+++||++||++++++||..+++++ .++++++|++|+++ .|++++++||++++++++
T Consensus 161 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~-----g~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 161 AMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEA-----GFRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETT-----EEEECCHHHHHHHHTTCC
T ss_pred EECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECC-----CEEECCHHHHHHHHHhcC
Confidence 358999999999999999999999987 88999999999987 499999999999998753
No 7
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=2.7e-37 Score=243.37 Aligned_cols=149 Identities=24% Similarity=0.432 Sum_probs=133.8
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|.++||+++|+||||||||||||| | |||+|+|.+.++... ++.+||++|++||+|++||+.
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~-~~~~Ki~~i~~~i~~~~aG~~ 79 (250)
T 1ryp_B 1 MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMS-ETLSKVSLLTPDIGAVYSGMG 79 (250)
T ss_dssp CCCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCG-GGCCSSEEEETTEEEEEEECH
T ss_pred CCCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccC-cccCceEEECCCEEEEeeeCH
Confidence 889999999999999999999998 5 899999998766554 489999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhCCCc------------------------------------------------------
Q 040809 63 SDANILINTARVQARR-YAYAYQEPI------------------------------------------------------ 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~-y~~~~~~~i------------------------------------------------------ 87 (161)
+|++.+++++|.+++. |++.|++++
T Consensus 80 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (250)
T 1ryp_B 80 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW 159 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEee
Confidence 9999999999999999 999998876
Q ss_pred -----------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCC-----------CceeEEEC
Q 040809 88 -----------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPS-----------GKVKYRIC 139 (161)
Q Consensus 88 -----------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~-----------g~~~~~~l 139 (161)
+.|+++||++||++++++||..++++ .+++++++|++|++++. +...|++|
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l 238 (250)
T 1ryp_B 160 KATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-EFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238 (250)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS-CCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEEC
T ss_pred ceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc-ccCCCCEEEEEEEccccccccccccccCCCCCeEEC
Confidence 35899999999999999999999987 67899999999998620 11259999
Q ss_pred CHHHHHHHHHHh
Q 040809 140 SPESLTMLLENF 151 (161)
Q Consensus 140 ~~~ei~~~l~~~ 151 (161)
+++||+++++++
T Consensus 239 ~~~ei~~~l~~~ 250 (250)
T 1ryp_B 239 TSQEINDRLEAL 250 (250)
T ss_dssp CHHHHHHHHTTC
T ss_pred CHHHHHHHHHhC
Confidence 999999999753
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.9e-37 Score=241.26 Aligned_cols=145 Identities=29% Similarity=0.477 Sum_probs=136.3
Q ss_pred CCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHH
Q 040809 4 RYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 65 (161)
Q Consensus 4 ~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 65 (161)
+||+++|+||||||||||||| | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 699999999999999999999 5 9999999999999988789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc----------------------------------------------------------
Q 040809 66 NILINTARVQARRYAYAYQEPI---------------------------------------------------------- 87 (161)
Q Consensus 66 ~~l~~~~r~~~~~y~~~~~~~i---------------------------------------------------------- 87 (161)
+.|++++|.+++.|+++++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 9999999999999999999987
Q ss_pred --------------cCC---CCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 --------------QDY---KDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 --------------~~y---~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.| +++||++||++++++||..+++ .++++++|++|++++ .|++++++||++++.+
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~----~~~~l~~~ei~~~~~~ 233 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS----DIVALSSEEINQYVTQ 233 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT----EEEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC----cEEECCHHHHHHHHHH
Confidence 468 8999999999999999999996 789999999999975 5999999999999999
Q ss_pred hcccC
Q 040809 151 FGVAQ 155 (161)
Q Consensus 151 ~~~~~ 155 (161)
+.+++
T Consensus 234 ~~~~~ 238 (241)
T 1ryp_D 234 IEQEK 238 (241)
T ss_dssp HTHHH
T ss_pred Hhhhh
Confidence 86544
No 9
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.8e-37 Score=243.43 Aligned_cols=145 Identities=26% Similarity=0.457 Sum_probs=133.8
Q ss_pred CCCCCCCcccCCCCceeeEecc------------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM------------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMS 63 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya------------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~ 63 (161)
.+||+++|+||||||||||||| | |||+|+|.+.++... ++.+|||+|++||+|++||+.+
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~-~~~~Ki~~i~~~i~~~~aG~~a 79 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDP-TTVSYIFCISRTIGMVVNGPIP 79 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCG-GGCCSEEECSSSCEEEEESCHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCC-CcCCceEEECCCEEEEEEecHH
Confidence 4899999999999999999998 5 999999999777664 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------------------------------------------------------
Q 040809 64 DANILINTARVQARRYAYAYQEPI-------------------------------------------------------- 87 (161)
Q Consensus 64 D~~~l~~~~r~~~~~y~~~~~~~i-------------------------------------------------------- 87 (161)
|++.+++++|.+++.|+++++++|
T Consensus 80 D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 80 DARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEE
Confidence 999999999999999999999988
Q ss_pred ---------------cCCCC-------CCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHH
Q 040809 88 ---------------QDYKD-------DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLT 145 (161)
Q Consensus 88 ---------------~~y~~-------~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~ 145 (161)
+.|++ +||++||++++++||..+++++ +++++++|++|+++ .|++++++||+
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~-----g~~~l~~~ei~ 233 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKD-----KFFTLSAENIE 233 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETT-----EEEECCHHHHH
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC-----CeEECCHHHHH
Confidence 24677 9999999999999999999997 89999999999987 49999999999
Q ss_pred HHHHHhccc
Q 040809 146 MLLENFGVA 154 (161)
Q Consensus 146 ~~l~~~~~~ 154 (161)
++++.++++
T Consensus 234 ~~~~~~~~~ 242 (243)
T 1ryp_A 234 ERLVAIAEQ 242 (243)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHhhcc
Confidence 999998543
No 10
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=4.3e-37 Score=241.64 Aligned_cols=147 Identities=29% Similarity=0.550 Sum_probs=135.0
Q ss_pred CCCCCCCcccCCCCceeeEecc------------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM------------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMS 63 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya------------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~ 63 (161)
.+||+++|+|||+|||+||||| | |||+|+|.+.++... ++.+||++|++||+|++||+.+
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~-~~~~Ki~~i~~~i~~~~aG~~a 85 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDS-STVTHLFKITENIGCVMTGMTA 85 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCG-GGCCSEEESSSSCEEEEEECHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCC-CccCceEEECCCEEEEEeccHH
Confidence 4899999999999999999998 5 999999999766654 4889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------------------------------------------------------
Q 040809 64 DANILINTARVQARRYAYAYQEPI-------------------------------------------------------- 87 (161)
Q Consensus 64 D~~~l~~~~r~~~~~y~~~~~~~i-------------------------------------------------------- 87 (161)
|++.|++++|.+++.|++++++++
T Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 165 (246)
T 1iru_A 86 DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKA 165 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeE
Confidence 999999999999999999999987
Q ss_pred ---------------cCCCC--CCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 ---------------QDYKD--DMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ---------------~~y~~--~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.|++ +||++||++++++||..+++++ .++++++|++|++++. .|++++++||+++++.
T Consensus 166 ~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~---~~~~l~~~ei~~~~~~ 241 (246)
T 1iru_A 166 TAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENP---KFRILTEAEIDAHLVA 241 (246)
T ss_dssp EEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEE---EEEECCHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCC---eEEECCHHHHHHHHHH
Confidence 35788 9999999999999999999997 9999999999998742 4999999999999999
Q ss_pred hccc
Q 040809 151 FGVA 154 (161)
Q Consensus 151 ~~~~ 154 (161)
++++
T Consensus 242 ~~~~ 245 (246)
T 1iru_A 242 LAER 245 (246)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 8543
No 11
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2e-37 Score=243.92 Aligned_cols=149 Identities=32% Similarity=0.530 Sum_probs=135.8
Q ss_pred CCCCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccH
Q 040809 1 MSRRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIM 62 (161)
Q Consensus 1 m~~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~ 62 (161)
|+ ||+++|+||||||||||||| | |||+|+|.++++... ++.+|||+|++||+|++||+.
T Consensus 1 ~~--yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~-~~~~KI~~i~~~i~~~~aG~~ 77 (248)
T 1iru_D 1 MS--YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDE-RTVRKICALDDNVCMAFAGLT 77 (248)
T ss_dssp -C--CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCG-GGGCSEEESSSSCEEEEEECH
T ss_pred CC--ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccC-CCCCcEEEEcCCEEEEEeecH
Confidence 66 99999999999999999999 5 999999999997654 488999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-------------------------------------------------------
Q 040809 63 SDANILINTARVQARRYAYAYQEPI------------------------------------------------------- 87 (161)
Q Consensus 63 ~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------- 87 (161)
+|++.|++++|.+++.|+++++++|
T Consensus 78 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 157 (248)
T 1iru_D 78 ADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWK 157 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEee
Confidence 9999999999999999999999987
Q ss_pred ----------------cCCCCCC--CHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 040809 88 ----------------QDYKDDM--TRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLE 149 (161)
Q Consensus 88 ----------------~~y~~~m--t~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~ 149 (161)
+.|+++| |++||++++++||..+++ .++++++|++|++++ .|++++++||++++.
T Consensus 158 ~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g----~~~~l~~~ei~~~~~ 230 (248)
T 1iru_D 158 ANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ----SLKILNPEEIEKYVA 230 (248)
T ss_dssp EEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS----CEECCCHHHHHHHTT
T ss_pred EEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC----cEEECCHHHHHHHHH
Confidence 3689999 999999999999999996 578999999999975 599999999999999
Q ss_pred HhcccCCCCC
Q 040809 150 NFGVAQPASE 159 (161)
Q Consensus 150 ~~~~~~~~~~ 159 (161)
.+.+++++++
T Consensus 231 ~~~~~~~~~~ 240 (248)
T 1iru_D 231 EIEKEKEENE 240 (248)
T ss_dssp TTTTTTTTTT
T ss_pred HHHhcchhhh
Confidence 9977665543
No 12
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.5e-37 Score=240.88 Aligned_cols=145 Identities=37% Similarity=0.706 Sum_probs=131.4
Q ss_pred CCC-CCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEecc
Q 040809 1 MSR-RYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGI 61 (161)
Q Consensus 1 m~~-~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~ 61 (161)
|++ +||+++|+|||||||+||||| | |||+|+|.++++.+ +++.+||++|++||+|++||+
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~ 81 (241)
T 1iru_E 3 LTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGL 81 (241)
T ss_dssp -----CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEEC
T ss_pred CccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeC
Confidence 554 899999999999999999999 5 89999999999988 568999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc------------------------------------------------------
Q 040809 62 MSDANILINTARVQARRYAYAYQEPI------------------------------------------------------ 87 (161)
Q Consensus 62 ~~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------ 87 (161)
.+|++.+++++|.+++.|++++++++
T Consensus 82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~ 161 (241)
T 1iru_E 82 IADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGT 161 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCc
Confidence 99999999999999999998887755
Q ss_pred ---------------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHH
Q 040809 88 ---------------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTM 146 (161)
Q Consensus 88 ---------------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~ 146 (161)
+.|+++||++||++++++||..++++ .+++++++|++|++++ .|++|+++||++
T Consensus 162 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~----~~~~l~~~ei~~ 236 (241)
T 1iru_E 162 FVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQ----NFHMFTKEELEE 236 (241)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSS----CCEECCHHHHHH
T ss_pred EEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCC----CeEECCHHHHHH
Confidence 24789999999999999999999998 8899999999999885 499999999999
Q ss_pred HHHHh
Q 040809 147 LLENF 151 (161)
Q Consensus 147 ~l~~~ 151 (161)
+++++
T Consensus 237 ~~~~~ 241 (241)
T 1iru_E 237 VIKDI 241 (241)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 99753
No 13
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.1e-37 Score=241.53 Aligned_cols=142 Identities=35% Similarity=0.644 Sum_probs=123.2
Q ss_pred CCC-CCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEecc
Q 040809 1 MSR-RYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGI 61 (161)
Q Consensus 1 m~~-~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~ 61 (161)
|++ +||+++|+|||||||+||||| | |||+|+|.++++.. .++.+||++|++||+|++||+
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~-~~~~~Ki~~i~~~i~~~~aG~ 81 (233)
T 1yar_A 3 QGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIE-QNSIEKIQLIDDYVAAVTSGL 81 (233)
T ss_dssp ----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBC-STTCCSEEEEETTEEEEEEEB
T ss_pred cccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCccccc-ccccCeEEEecCCEEEEEeeC
Confidence 554 899999999999999999999 5 89999999998765 458899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc------------------------------------------------------
Q 040809 62 MSDANILINTARVQARRYAYAYQEPI------------------------------------------------------ 87 (161)
Q Consensus 62 ~~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------ 87 (161)
.+|++.+++++|.+++.|++++++++
T Consensus 82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~ 161 (233)
T 1yar_A 82 VADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYK 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeee
Confidence 99999999999999999999999887
Q ss_pred ----------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 040809 88 ----------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148 (161)
Q Consensus 88 ----------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l 148 (161)
+.|+++||++||++++++||..+++++. ++++++|++|++++ .|++++++||+++|
T Consensus 162 ~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~----~~~~~~~~ei~~~l 233 (233)
T 1yar_A 162 ATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN----KYRIYDQEEVKKFL 233 (233)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTS----CCEECCHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCC----CEEECCHHHHHhhC
Confidence 3589999999999999999999999865 89999999999885 49999999998764
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.7e-36 Score=237.58 Aligned_cols=146 Identities=36% Similarity=0.573 Sum_probs=134.4
Q ss_pred CCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHH
Q 040809 6 DRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANI 67 (161)
Q Consensus 6 ~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 67 (161)
|+++|+||||||||||||| | |||+|+|.++++++ +++.+|||+|++||+|++||+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHH
Confidence 7899999999999999999 5 99999999999988 558999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCc------------------------------------------------------------
Q 040809 68 LINTARVQARRYAYAYQEPI------------------------------------------------------------ 87 (161)
Q Consensus 68 l~~~~r~~~~~y~~~~~~~i------------------------------------------------------------ 87 (161)
+++++|.+++.|++++++++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999877655
Q ss_pred -----------------cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 -----------------QDYKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 -----------------~~y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.|+++||++||++++++||..++++ ..++.+++|++|++++ .|++++++||++++++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~----~~~~~~~~ei~~~~~~ 234 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQD----GFKIYDNEKTAELIKE 234 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTT----EEEECCHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCC----CeEECCHHHHHHHHHH
Confidence 35789999999999999999999998 8899999999999875 5999999999999999
Q ss_pred hcccCCC
Q 040809 151 FGVAQPA 157 (161)
Q Consensus 151 ~~~~~~~ 157 (161)
+.+++++
T Consensus 235 ~~~~~~~ 241 (242)
T 1ryp_E 235 LKEKEAA 241 (242)
T ss_dssp HHHHHTT
T ss_pred Hhhhhcc
Confidence 9665543
No 15
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.3e-36 Score=241.08 Aligned_cols=142 Identities=29% Similarity=0.473 Sum_probs=129.5
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
.+||+++|+|||+||||||||| | |||+|+|.++++++++ ..+|||+|++||+|++||+.+|
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD 84 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPD 84 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHH
Confidence 7899999999999999999999 6 9999999999999987 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.|++++|.+++.|+++|+++|
T Consensus 85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 164 (288)
T 3nzj_F 85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 164 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEE
Confidence 99999999999999999999988
Q ss_pred -------------cC---CCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEe-CCCCceeEEECCHHHHHHH
Q 040809 88 -------------QD---YKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFL-LPSGKVKYRICSPESLTML 147 (161)
Q Consensus 88 -------------~~---y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~-~~~g~~~~~~l~~~ei~~~ 147 (161)
+. |+++||++||++++++||..+++++..+++++||+||++ +.+| .++.++.+++++.
T Consensus 165 iGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~--~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 165 TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG--LHKFVKGDLLQEA 239 (288)
T ss_dssp ESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTT--CCEECCHHHHHHH
T ss_pred EcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCc--eEEECCHHHHHHH
Confidence 35 899999999999999999999999888999999999998 5444 5666666665543
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.8e-36 Score=240.52 Aligned_cols=145 Identities=26% Similarity=0.499 Sum_probs=133.0
Q ss_pred CC-CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEecc
Q 040809 1 MS-RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGI 61 (161)
Q Consensus 1 m~-~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~ 61 (161)
|. ++||+++|+|||+||||||||| | |||+|+|.++++. ++.+|||+|++||+|++||+
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~ 77 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGL 77 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEEC
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCC
Confidence 55 5899999999999999999999 5 9999999999974 36799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc------------------------------------------------------
Q 040809 62 MSDANILINTARVQARRYAYAYQEPI------------------------------------------------------ 87 (161)
Q Consensus 62 ~~D~~~l~~~~r~~~~~y~~~~~~~i------------------------------------------------------ 87 (161)
.+|++.|++++|.+++.|+++|+++|
T Consensus 78 ~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 157 (263)
T 1iru_F 78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCR 157 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEee
Confidence 99999999999999999999999988
Q ss_pred ----------------cCCCC--CCCHHHHHHHHHHHHHHhhccC-CCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 040809 88 ----------------QDYKD--DMTRQEAVQLALKVLRKTMDST-SLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148 (161)
Q Consensus 88 ----------------~~y~~--~mt~eeai~la~~al~~~~~~~-~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l 148 (161)
+.|++ +||++||++++++||..+++++ .+++++++|++|++++ .|++++++||++++
T Consensus 158 ~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~----~~~~l~~~ei~~~~ 233 (263)
T 1iru_F 158 AMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL----EFTIYDDDDVSPFL 233 (263)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE----EEEEECSGGGHHHH
T ss_pred EEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC----CeEECCHHHHHHHH
Confidence 24666 9999999999999999999998 4899999999999875 59999999999999
Q ss_pred HHhc
Q 040809 149 ENFG 152 (161)
Q Consensus 149 ~~~~ 152 (161)
.++.
T Consensus 234 ~~~~ 237 (263)
T 1iru_F 234 EGLE 237 (263)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 9885
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=3.2e-35 Score=230.93 Aligned_cols=147 Identities=28% Similarity=0.439 Sum_probs=133.1
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
++||+++|+|||+||||||||| | |||+|+|.++++++++ ..+||++|++||+|++||+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHH
Confidence 5899999999999999999999 6 9999999999999987 4699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.|++++|.+++.|++++++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 160 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 160 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEE
Confidence 99999999999999999999977
Q ss_pred -------------cC---CCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEe-CCCCceeEEECCHHHHHHHHHH
Q 040809 88 -------------QD---YKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFL-LPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 -------------~~---y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~-~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+. |+++||++||++++++||..+++++..++.+++|++|++ +.+ .++++.++++.+...+
T Consensus 161 iG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~---g~~~~~~~~~~~~~~~ 237 (244)
T 1ryp_G 161 TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETN---GLHKFVKGDLLQEAID 237 (244)
T ss_dssp ESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTT---TSEEECCTHHHHHHHH
T ss_pred ECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCC---CeeeeChHHHHHHHHH
Confidence 23 899999999999999999999999888999999999997 222 3678888888777766
Q ss_pred hcc
Q 040809 151 FGV 153 (161)
Q Consensus 151 ~~~ 153 (161)
.++
T Consensus 238 ~~~ 240 (244)
T 1ryp_G 238 FAQ 240 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=6.7e-36 Score=233.15 Aligned_cols=138 Identities=27% Similarity=0.451 Sum_probs=126.8
Q ss_pred CCCCCCCcccCCCCceeeEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHH
Q 040809 3 RRYDRQTTVFSPEGRLYQVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSD 64 (161)
Q Consensus 3 ~~y~~~~~~fsp~Grl~qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D 64 (161)
++||+++|+|||||||+||||| | |||+|+|.++++. . +.+||++|++||+|++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~-~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--S-YQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--C-CCCCEEEEETTEEEEEEECHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--c-ccCcEEEEcCCEEEEEEechHH
Confidence 4799999999999999999999 5 9999999999875 2 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc---------------------------------------------------------
Q 040809 65 ANILINTARVQARRYAYAYQEPI--------------------------------------------------------- 87 (161)
Q Consensus 65 ~~~l~~~~r~~~~~y~~~~~~~i--------------------------------------------------------- 87 (161)
++.+++++|.+++.|+++++++|
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEE
Confidence 99999999999999999999988
Q ss_pred -------------cCCCC--CC--CHHHHHHHHHHHHHHhhccC-CCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHH
Q 040809 88 -------------QDYKD--DM--TRQEAVQLALKVLRKTMDST-SLTSEKLELAEVFLLPSGKVKYRICSPESLTMLL 148 (161)
Q Consensus 88 -------------~~y~~--~m--t~eeai~la~~al~~~~~~~-~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l 148 (161)
+.|++ +| |++||++++++||..++ ++ .+++++++|++|++++ .|++++++||+++|
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~----~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT----PFTIYDGEAVAKYI 233 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE----EEEEEEGGGGGGGC
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC----CEEECCHHHHHhhC
Confidence 24677 99 99999999999999999 66 5799999999999875 59999999998764
No 19
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.1e-26 Score=179.47 Aligned_cols=137 Identities=23% Similarity=0.351 Sum_probs=120.8
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++.|++++
T Consensus 4 ~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~ 83 (219)
T 3h4p_a 4 TVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATL 83 (219)
T ss_dssp EEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5566666 6 99999999998776667899999999999999999999999999999999999999999988
Q ss_pred ------------------------------------------------------------cCCCCCCCHHHHHHHHHHHH
Q 040809 88 ------------------------------------------------------------QDYKDDMTRQEAVQLALKVL 107 (161)
Q Consensus 88 ------------------------------------------------------------~~y~~~mt~eeai~la~~al 107 (161)
+.|+++||++||++++++||
T Consensus 84 l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al 163 (219)
T 3h4p_a 84 LSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNAL 163 (219)
T ss_dssp HHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999
Q ss_pred HHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCCCC
Q 040809 108 RKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPASE 159 (161)
Q Consensus 108 ~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~~~ 159 (161)
..++++|..++++++|++|+++ .|++|+++||+++|++++.+++++.
T Consensus 164 ~~~~~rd~~sg~~i~v~vi~~~-----g~~~l~~~ei~~~l~~~~~~~~~~~ 210 (219)
T 3h4p_a 164 KSAMERDTFSGNGISLAVITKD-----GVKIFEDEEIEKILDSMKAKPKKKT 210 (219)
T ss_dssp HHHHTSCSSCCSCCCEEEEETT-----EEEECCHHHHHHHHHHCC-------
T ss_pred HHHHhhcCCCCCcEEEEEEeCC-----CeEEcCHHHHHHHHHHhhccccccc
Confidence 9999999999999999999987 4999999999999999987776654
No 20
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.94 E-value=6.9e-27 Score=185.00 Aligned_cols=139 Identities=23% Similarity=0.279 Sum_probs=112.5
Q ss_pred cccCCCCcee-eEecc-----------------e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHH
Q 040809 10 TVFSPEGRLY-QVDYM-----------------G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILIN 70 (161)
Q Consensus 10 ~~fsp~Grl~-qveya-----------------G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~ 70 (161)
..|||+|++. ||||| | |||+|+| +++.+|||+|++||+|++||+.+|++.|++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 3589999995 99999 6 9999998 247899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-Cc--------------------------------------------------------------
Q 040809 71 TARVQARRYAYAYQE-PI-------------------------------------------------------------- 87 (161)
Q Consensus 71 ~~r~~~~~y~~~~~~-~i-------------------------------------------------------------- 87 (161)
++|.+++.|++.|+. +|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ai 156 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVM 156 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEE
Confidence 999999999988874 55
Q ss_pred ------------cCCCCCCCHHHHHHHHHHHHHHhh-----ccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 88 ------------QDYKDDMTRQEAVQLALKVLRKTM-----DSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 88 ------------~~y~~~mt~eeai~la~~al~~~~-----~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+.|+++||++||++++++||..++ +++. ++.+++|++|++++.+ +.|++|+++||++++.+
T Consensus 157 G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~-~~~~~l~~~ei~~~~~~ 234 (259)
T 1q5q_A 157 GGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPR-RAFRRIAGTALEQLVPA 234 (259)
T ss_dssp SSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSS-CCEEECCHHHHHTTSCC
T ss_pred CCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCc-CCeEECCHHHHHHHHHH
Confidence 246899999999999999999999 7766 9999999999998422 25999999999999988
Q ss_pred hcccCCCC
Q 040809 151 FGVAQPAS 158 (161)
Q Consensus 151 ~~~~~~~~ 158 (161)
+.+...++
T Consensus 235 ~~~~~~~~ 242 (259)
T 1q5q_A 235 EPAAASES 242 (259)
T ss_dssp C-------
T ss_pred hhhccccc
Confidence 85554433
No 21
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.94 E-value=4.1e-26 Score=174.24 Aligned_cols=133 Identities=18% Similarity=0.250 Sum_probs=118.3
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-+.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++++++++
T Consensus 4 vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l 83 (204)
T 1iru_L 4 LAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLL 83 (204)
T ss_dssp EEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred EEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 445555 5 89999999986555556899999999999999999999999999999999999999999887
Q ss_pred ---------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHh
Q 040809 88 ---------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 88 ---------------------------------------------------------~~y~~~mt~eeai~la~~al~~~ 110 (161)
+.|+++||++||++++++||..+
T Consensus 84 ~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~ 163 (204)
T 1iru_L 84 ANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQA 163 (204)
T ss_dssp HHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999999
Q ss_pred hccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCC
Q 040809 111 MDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQP 156 (161)
Q Consensus 111 ~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~ 156 (161)
++++..++++++|++|+++ .|+.++++||+++++++.+++|
T Consensus 164 ~~rd~~s~~~i~v~vi~~~-----g~~~l~~~ei~~~~~~~~~~~~ 204 (204)
T 1iru_L 164 TYRDAYSGGAVNLYHVRED-----GWIRVSSDNVADLHEKYSGSTP 204 (204)
T ss_dssp HHHBTTCCSEEEEEEECSS-----CEEEEEEEEHHHHHHHHTC---
T ss_pred HHhCccCCCceEEEEEeCC-----ceEEeCHHHHHHHHHHhccCCC
Confidence 9998889999999999986 4999999999999999977654
No 22
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.93 E-value=2.8e-25 Score=169.37 Aligned_cols=130 Identities=22% Similarity=0.372 Sum_probs=117.2
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|-+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|+++++++|
T Consensus 3 ~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (202)
T 1j2q_H 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATL 82 (202)
T ss_dssp EEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3445555 5 99999999986555556899999999999999999999999999999999999999999987
Q ss_pred -----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHH
Q 040809 88 -----------------------------------------------------------QDYKDDMTRQEAVQLALKVLR 108 (161)
Q Consensus 88 -----------------------------------------------------------~~y~~~mt~eeai~la~~al~ 108 (161)
+.|+++||++||++++++||.
T Consensus 83 l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~ 162 (202)
T 1j2q_H 83 TSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIY 162 (202)
T ss_dssp HHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHH
Confidence 358999999999999999999
Q ss_pred HhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 109 KTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 109 ~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
.+++++..++++++|++|+++ .|++++++||++++++++
T Consensus 163 ~~~~~d~~s~~~i~v~vi~~~-----g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 163 SAMKRDSASGDGIDVVKITED-----EFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHTTCTTSCSCEEEEEECSS-----CEEECHHHHHHHHGGGTT
T ss_pred HHHhcCCCCCCcEEEEEEeCC-----CeEEeCHHHHHHHHHHhh
Confidence 999998889999999999987 399999999999998875
No 23
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.92 E-value=1.7e-24 Score=166.99 Aligned_cols=133 Identities=17% Similarity=0.317 Sum_probs=120.0
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
+.+.-|.+. | |||+|+|.+++.++.+++.+||++|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 9 tt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 88 (217)
T 1yar_H 9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 88 (217)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 347777777 6 99999999986555556899999999999999999999999999999999999999999887
Q ss_pred -----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHH
Q 040809 88 -----------------------------------------------------------QDYKDDMTRQEAVQLALKVLR 108 (161)
Q Consensus 88 -----------------------------------------------------------~~y~~~mt~eeai~la~~al~ 108 (161)
+.|+++||++||++++++||.
T Consensus 89 ~~l~~~~~~~r~rp~~v~~lvaG~D~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~ 168 (217)
T 1yar_H 89 TLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAIS 168 (217)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEESSSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEEEEEECCCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence 358999999999999999999
Q ss_pred HhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 109 KTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 109 ~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
.+.++|..++++++|++|+++. .|++++++||+++++++.
T Consensus 169 ~~~~rd~~s~~~i~v~vi~~~~----g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 169 AAKQRDSASGGMIDVAVITRKD----GYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHCTTCCSCCEEEEEETTT----EEEECCHHHHHHHHHHHT
T ss_pred HHHhccCCCCCcEEEEEEECCC----CEEEcCHHHHHHHHHHHH
Confidence 9999988899999999999843 599999999999998775
No 24
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.92 E-value=3.6e-25 Score=169.98 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=120.6
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++++++++
T Consensus 3 ~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~ 82 (212)
T 1ryp_L 3 TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKI 82 (212)
T ss_dssp EEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445565 5 99999999986555555899999999999999999999999999999999999999999887
Q ss_pred -----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHH
Q 040809 88 -----------------------------------------------------------QDYKDDMTRQEAVQLALKVLR 108 (161)
Q Consensus 88 -----------------------------------------------------------~~y~~~mt~eeai~la~~al~ 108 (161)
+.|+++||++||++++++||.
T Consensus 83 l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~ 162 (212)
T 1ryp_L 83 LSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 162 (212)
T ss_dssp HHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999
Q ss_pred HhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCCC
Q 040809 109 KTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPAS 158 (161)
Q Consensus 109 ~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~~ 158 (161)
.+++++..++++++|++|+++ .|++++++||++++.++.+++.++
T Consensus 163 ~~~~rd~~s~~~i~v~vi~~~-----g~~~~~~~ei~~~~~~~~~~~~~~ 207 (212)
T 1ryp_L 163 AAAHRDAYSGGSVNLYHVTED-----GWIYHGNHDVGELFWKVKEEEGSF 207 (212)
T ss_dssp HHHHHBTTCCSEEEEEEEETT-----EEEEEEEEEHHHHHHHHHHHHCCC
T ss_pred HHHHhccccCCceEEEEEcCC-----ceEEECHHHHHHHHHHHHHhhhhh
Confidence 999998899999999999976 499999999999999886655443
No 25
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.92 E-value=1.9e-25 Score=169.80 Aligned_cols=128 Identities=17% Similarity=0.285 Sum_probs=115.4
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-|.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 4 vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l 83 (199)
T 3unf_N 4 MAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVV 83 (199)
T ss_dssp EEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred EEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445565 5 99999999998666667899999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHhh
Q 040809 88 --------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKTM 111 (161)
Q Consensus 88 --------------------------------------------------------~~y~~~mt~eeai~la~~al~~~~ 111 (161)
+.|+++||++||++++++||..++
T Consensus 84 ~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 163 (199)
T 3unf_N 84 KNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAM 163 (199)
T ss_dssp HHHHHHTTTTCCCCEEEEEEETTTEEEEEECGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999
Q ss_pred ccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHH
Q 040809 112 DSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLE 149 (161)
Q Consensus 112 ~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~ 149 (161)
++|..++++++|++|++++. .|+.|+++||+++++
T Consensus 164 ~~d~~sg~~i~v~vi~~~g~---~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 164 NRDGSSGGVIYLVTITAAGV---DHRVILGDELPKFYD 198 (199)
T ss_dssp HHCTTCCSCEEEEEECSSCE---EEEEECGGGSCCCCC
T ss_pred HhccccCCCeEEEEEcCCCE---EEEEcCcccCccccc
Confidence 99989999999999999853 699999999987653
No 26
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.92 E-value=4.7e-25 Score=168.49 Aligned_cols=130 Identities=17% Similarity=0.289 Sum_probs=116.2
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 3 ~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~ 82 (205)
T 1iru_H 3 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASL 82 (205)
T ss_dssp EEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445555 6 99999999999555566889999999999999999999999999999999999999999887
Q ss_pred ----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHH
Q 040809 88 ----------------------------------------------------------QDYKDDMTRQEAVQLALKVLRK 109 (161)
Q Consensus 88 ----------------------------------------------------------~~y~~~mt~eeai~la~~al~~ 109 (161)
+.|+++||++||++++++||..
T Consensus 83 l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~ 162 (205)
T 1iru_H 83 FKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALAL 162 (205)
T ss_dssp HHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999
Q ss_pred hhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHH
Q 040809 110 TMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLEN 150 (161)
Q Consensus 110 ~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~ 150 (161)
+++++..++++++|++|++++. .|++|+++||++++++
T Consensus 163 ~~~~d~~s~~~i~v~vi~~~g~---~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 163 AMERDGSSGGVIRLAAIAESGV---ERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHBTTCCSCEEEEEEETTEE---EEEEECGGGSCCCCCC
T ss_pred HHHhccccCCcEEEEEEeCCCe---EEEEeChHHhhHHHhh
Confidence 9999889999999999998752 5899999999888764
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.92 E-value=1.3e-24 Score=174.22 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=120.8
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|.|. | |||+|+|.+.+.++.+++.+||++|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 78 ~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ 157 (287)
T 3nzj_K 78 TLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKI 157 (287)
T ss_dssp EEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4444444 6 99999999987766677899999999999999999999999999999999999999999987
Q ss_pred -----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHH
Q 040809 88 -----------------------------------------------------------QDYKDDMTRQEAVQLALKVLR 108 (161)
Q Consensus 88 -----------------------------------------------------------~~y~~~mt~eeai~la~~al~ 108 (161)
+.|+++||++||++++++||.
T Consensus 158 ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~ 237 (287)
T 3nzj_K 158 LSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 237 (287)
T ss_dssp HHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999
Q ss_pred HhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccC
Q 040809 109 KTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQ 155 (161)
Q Consensus 109 ~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~ 155 (161)
.+.++|..++++++|++|+++ .|++++++||++++.++++++
T Consensus 238 ~a~~rD~~sg~~i~V~vItkd-----g~~~l~~~ev~~~l~~~~e~~ 279 (287)
T 3nzj_K 238 AAAHRDAYSGGSVNLYHVTED-----GWIYHGNHDVGELFWKVKEEE 279 (287)
T ss_dssp HHHHHBTTCCSEEEEEEEETT-----EEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHhhCcCCCCceEEEEEeCC-----CEEEeCHHHHHHHHHHHHHhh
Confidence 999999999999999999988 499999999999999887654
No 28
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.91 E-value=4.4e-24 Score=168.01 Aligned_cols=125 Identities=26% Similarity=0.342 Sum_probs=99.7
Q ss_pred e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhC-CCc---------------
Q 040809 25 G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQ-EPI--------------- 87 (161)
Q Consensus 25 G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~-~~i--------------- 87 (161)
| |||+|+| +++.+|||+|++||+|++||+.+|++.|.+.++..++.|+++|+ ++|
T Consensus 38 gVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q 109 (248)
T 3mi0_A 38 GVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGT 109 (248)
T ss_dssp EEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 5 9999999 23789999999999999999999999999999999999999999 666
Q ss_pred -----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHH
Q 040809 88 -----------------------------------------------------------QDYKDDMTRQEAVQLALKVLR 108 (161)
Q Consensus 88 -----------------------------------------------------------~~y~~~mt~eeai~la~~al~ 108 (161)
++|+++||++||++++++||+
T Consensus 110 ~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~ 189 (248)
T 3mi0_A 110 IFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALR 189 (248)
T ss_dssp HHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred HhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 247899999999999999999
Q ss_pred Hhh-------ccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCCCC
Q 040809 109 KTM-------DSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPASE 159 (161)
Q Consensus 109 ~~~-------~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~~~ 159 (161)
.++ ++ .++++++||+||++++. .+.|++|+++||+++|+++...+-+.|
T Consensus 190 ~~~~~~~~~~~~-~~~~~~iev~vv~~~g~-~~~f~~l~~~ei~~~l~~~~~~~~~~~ 245 (248)
T 3mi0_A 190 AGSADTSGGDQP-TLGVASLEVAVLDANRP-RRAFRRITGSALQALLVDQESPQSDGE 245 (248)
T ss_dssp HC-------------CCTTEEEEEEETTSS-SCCEEECCHHHHHHTC-----------
T ss_pred HHHhhcccCccc-ccCCCcEEEEEEECCCC-cccEEECCHHHHHHHHHHcCCCccccc
Confidence 999 44 68899999999999852 237999999999999998865544433
No 29
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.90 E-value=9.4e-24 Score=164.81 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=111.1
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-+-|. | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 4 vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l 83 (234)
T 3unf_H 4 AGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRIL 83 (234)
T ss_dssp EEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred EEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHH
Confidence 345555 6 99999999999988877899999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHhh
Q 040809 88 --------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKTM 111 (161)
Q Consensus 88 --------------------------------------------------------~~y~~~mt~eeai~la~~al~~~~ 111 (161)
+.|+++||++||++++++||..++
T Consensus 84 ~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~ 163 (234)
T 3unf_H 84 RQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGI 163 (234)
T ss_dssp HHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999
Q ss_pred ccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHH
Q 040809 112 DSTSLTSEKLELAEVFLLPSGKVKYRICSPESLT 145 (161)
Q Consensus 112 ~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~ 145 (161)
.+|..++++++|++|++++ ++.+++.+++
T Consensus 164 ~~D~~sg~~iev~vi~~dg-----~~~l~~~~i~ 192 (234)
T 3unf_H 164 LSDLGSGGNVDACVITAGG-----AKLQRALSTP 192 (234)
T ss_dssp HHBTTCCSCEEEEEEESSC-----EEEEEEEECC
T ss_pred hhcCCCCCcEEEEEEECCC-----EEEeCceecc
Confidence 9988899999999999983 8888877764
No 30
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.89 E-value=2.4e-22 Score=153.37 Aligned_cols=119 Identities=10% Similarity=0.170 Sum_probs=108.9
Q ss_pred cCCCCc-eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc-
Q 040809 12 FSPEGR-LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI- 87 (161)
Q Consensus 12 fsp~Gr-l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i- 87 (161)
+...|. +.-|.+. | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++.+++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 1iru_J 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIK 83 (205)
T ss_dssp TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred ccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 334443 7888888 5 99999999999999887899999999999999999999999999999999999999999887
Q ss_pred --------------------------------------------------------------------cCCCCCCCHHHH
Q 040809 88 --------------------------------------------------------------------QDYKDDMTRQEA 99 (161)
Q Consensus 88 --------------------------------------------------------------------~~y~~~mt~eea 99 (161)
+.|+++||++||
T Consensus 84 v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea 163 (205)
T 1iru_J 84 PYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHL 163 (205)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHH
Confidence 357899999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 100 VQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 100 i~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
++++++||..+++++..++++++|++|++++
T Consensus 164 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 164 FETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp HHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred HHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 9999999999999988899999999999875
No 31
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.89 E-value=1.9e-22 Score=153.16 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=106.9
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-|.+. | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++++++++
T Consensus 5 vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l 84 (198)
T 1ryp_K 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFV 84 (198)
T ss_dssp EEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred EEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 445555 5 89999999999988777899999999999999999999999999999999999999999877
Q ss_pred -------------------------------------------------------------cCCCCCCCHHHHHHHHHHH
Q 040809 88 -------------------------------------------------------------QDYKDDMTRQEAVQLALKV 106 (161)
Q Consensus 88 -------------------------------------------------------------~~y~~~mt~eeai~la~~a 106 (161)
+.|+++||++||++++++|
T Consensus 85 ~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~a 164 (198)
T 1ryp_K 85 RQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLC 164 (198)
T ss_dssp HHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 3589999999999999999
Q ss_pred HHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 040809 107 LRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSP 141 (161)
Q Consensus 107 l~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~ 141 (161)
|..+.+++..++++++|++|+++ +++++++
T Consensus 165 l~~~~~~d~~s~~~i~v~vi~~~-----g~~~~~~ 194 (198)
T 1ryp_K 165 VQELEKRMPMDFKGVIVKIVDKD-----GIRQVDD 194 (198)
T ss_dssp HHHHHHHCSBCCCCEEEEEEETT-----EEEEECC
T ss_pred HHHHHHhCccCCCceEEEEEcCC-----CEEEecc
Confidence 99999998899999999999987 4777764
No 32
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.89 E-value=4.7e-22 Score=152.61 Aligned_cols=115 Identities=13% Similarity=0.202 Sum_probs=106.5
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
+.+.-|.+. | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++++++++
T Consensus 10 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 89 (213)
T 1iru_M 10 GTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIA 89 (213)
T ss_dssp CEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 348888888 6 99999999999998877899999999999999999999999999999999999999999877
Q ss_pred -------------------------------------------------------------cC---------CCCCCCHH
Q 040809 88 -------------------------------------------------------------QD---------YKDDMTRQ 97 (161)
Q Consensus 88 -------------------------------------------------------------~~---------y~~~mt~e 97 (161)
+. |+++||++
T Consensus 90 ~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~e 169 (213)
T 1iru_M 90 AMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLD 169 (213)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHH
Confidence 23 88999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 98 EAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 98 eai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
||++++++||..+.+++..++++++|++|++++
T Consensus 170 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 202 (213)
T 1iru_M 170 RAMRLVKDVFISAAERDVYTGDALRICIVTKEG 202 (213)
T ss_dssp HHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC
Confidence 999999999999999988999999999999874
No 33
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.88 E-value=5.8e-22 Score=151.18 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=109.2
Q ss_pred ccCCCCc-eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 040809 11 VFSPEGR-LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI 87 (161)
Q Consensus 11 ~fsp~Gr-l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i 87 (161)
+|+..|. +.-|.+. | |||+|+|.++++++.+++.+|||+|+ ||+|++||+.+|++.|++++|.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 81 (204)
T 1ryp_J 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI 81 (204)
T ss_dssp GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 4555554 8888888 5 99999999999999888899999999 99999999999999999999999999999999887
Q ss_pred ---------------------------------------------------------------------cCCCCCCCHHH
Q 040809 88 ---------------------------------------------------------------------QDYKDDMTRQE 98 (161)
Q Consensus 88 ---------------------------------------------------------------------~~y~~~mt~ee 98 (161)
+.|+++||++|
T Consensus 82 ~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 161 (204)
T 1ryp_J 82 EPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPED 161 (204)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHH
Confidence 35789999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 99 AVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 99 ai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
|++++++||..+++++..++++++|++|++++
T Consensus 162 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 162 LFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC
Confidence 99999999999999988999999999999875
No 34
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.88 E-value=3.7e-22 Score=155.66 Aligned_cols=135 Identities=22% Similarity=0.252 Sum_probs=115.6
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|-+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|+++|++++
T Consensus 3 ~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~ 82 (235)
T 1q5q_H 3 IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANR 82 (235)
T ss_dssp EEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHH
Confidence 3455566 5 99999999986555556899999999999999999999999999999999999999988877
Q ss_pred ---------------------------------------------------------------------cCCCCCCCHHH
Q 040809 88 ---------------------------------------------------------------------QDYKDDMTRQE 98 (161)
Q Consensus 88 ---------------------------------------------------------------------~~y~~~mt~ee 98 (161)
+.|+++||++|
T Consensus 83 l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 162 (235)
T 1q5q_H 83 LASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEET 162 (235)
T ss_dssp HHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHH
Confidence 23689999999
Q ss_pred HHHHHHHHHHHhhccCCCCCC--cE-----EEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCC
Q 040809 99 AVQLALKVLRKTMDSTSLTSE--KL-----ELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPA 157 (161)
Q Consensus 99 ai~la~~al~~~~~~~~~~~~--~i-----ei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~ 157 (161)
|++++++||..++++|..++. ++ +|++|+++ .|++++++|+++++.++.+++.+
T Consensus 163 A~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~-----g~~~l~~~ei~~~~~~~~~~~~~ 223 (235)
T 1q5q_H 163 ALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA-----GAVHVSEETTSELARRIVAERTE 223 (235)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT-----EEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCC-----CeEEeCHHHHHHHHHHHHHHHhh
Confidence 999999999999998777664 23 99999976 49999999999999998665443
No 35
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.88 E-value=3.4e-22 Score=160.51 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=96.3
Q ss_pred e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc----------------
Q 040809 25 G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI---------------- 87 (161)
Q Consensus 25 G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i---------------- 87 (161)
| |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++.+++++
T Consensus 68 GVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~ 147 (291)
T 2jay_A 68 GVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGN 147 (291)
T ss_dssp EEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHh
Confidence 5 99999999998777777899999999999999999999999999999999999999988877
Q ss_pred -------------------------------------------------------------cCCCCCCCHHHHHHHHHHH
Q 040809 88 -------------------------------------------------------------QDYKDDMTRQEAVQLALKV 106 (161)
Q Consensus 88 -------------------------------------------------------------~~y~~~mt~eeai~la~~a 106 (161)
+.|+++||++||++++++|
T Consensus 148 ~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~a 227 (291)
T 2jay_A 148 LAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEA 227 (291)
T ss_dssp HHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHH
T ss_pred hhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 2367999999999999999
Q ss_pred HHHhhccCCCCCCcE--------EEEEEEeCCCCceeEEECCHHHHHHHHHHhccc
Q 040809 107 LRKTMDSTSLTSEKL--------ELAEVFLLPSGKVKYRICSPESLTMLLENFGVA 154 (161)
Q Consensus 107 l~~~~~~~~~~~~~i--------ei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~ 154 (161)
|..++++|..++ ++ +|++|+++ .|++++++||++++..+.++
T Consensus 228 L~~a~~~D~~sg-~~e~vr~~~~~v~vi~~d-----g~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 228 LYDAADDDSATG-GPDLVRGIFPTAVIIDAD-----GAVDVPESRIAELARAIIES 277 (291)
T ss_dssp HHHC-----------------CCEEEEEETT-----EEEECCHHHHHHHHHHC---
T ss_pred HHHHHhhCCCCC-CcccccccCCEEEEEECC-----CeEEcCHHHHHHHHHHHHHh
Confidence 999999876655 44 69999987 49999999999999988554
No 36
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.88 E-value=2.4e-22 Score=155.52 Aligned_cols=113 Identities=15% Similarity=0.247 Sum_probs=103.8
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|.+. | |||+|+|.++++++.+++.+||++|++||+|++||+.+|++.|++++|.+++.|++++++++
T Consensus 3 ~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~ 82 (222)
T 1ryp_I 3 IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQM 82 (222)
T ss_dssp EEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred EEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445565 5 99999999999988887899999999999999999999999999999999999999999987
Q ss_pred ---------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHh
Q 040809 88 ---------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 88 ---------------------------------------------------------~~y~~~mt~eeai~la~~al~~~ 110 (161)
+.|+++||++||++++++||..+
T Consensus 83 l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~ 162 (222)
T 1ryp_I 83 LKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAG 162 (222)
T ss_dssp HHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHH
Confidence 35899999999999999999999
Q ss_pred hccCCCCCCcEEEEEEEeCC
Q 040809 111 MDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 111 ~~~~~~~~~~iei~ii~~~~ 130 (161)
+++|..++++++|++|++++
T Consensus 163 ~~~d~~sg~~i~v~vi~~~g 182 (222)
T 1ryp_I 163 IWNDLGSGSNVDVCVMEIGK 182 (222)
T ss_dssp HHHCTTCCSCEEEEEEETTS
T ss_pred HhccccCCCcEEEEEEECCC
Confidence 99988899999999999874
No 37
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.88 E-value=5.8e-22 Score=153.26 Aligned_cols=115 Identities=13% Similarity=0.216 Sum_probs=106.6
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhC-CCc-----
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQ-EPI----- 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~-~~i----- 87 (161)
+.+.-|.+. | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|+++++ +++
T Consensus 10 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~l 89 (222)
T 1ryp_M 10 GTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSA 89 (222)
T ss_dssp CEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred ccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 348888888 5 99999999999988777899999999999999999999999999999999999999999 877
Q ss_pred --------------------------------------------------------------cC----------------
Q 040809 88 --------------------------------------------------------------QD---------------- 89 (161)
Q Consensus 88 --------------------------------------------------------------~~---------------- 89 (161)
+.
T Consensus 90 a~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~ 169 (222)
T 1ryp_M 90 ARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVK 169 (222)
T ss_dssp HHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSB
T ss_pred HHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccc
Confidence 12
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Q 040809 90 -YKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 90 -y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
|+++||+|||++++++||..+.+++..++++++|++|++++
T Consensus 170 ~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g 211 (222)
T 1ryp_M 170 KPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG 211 (222)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC
Confidence 88999999999999999999999998999999999999874
No 38
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.88 E-value=1.2e-21 Score=157.57 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=114.9
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|-|. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|+++|++++
T Consensus 68 iVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~ 147 (294)
T 1q5r_H 68 IVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANR 147 (294)
T ss_dssp EEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHH
Confidence 5555555 5 99999999986555556899999999999999999999999999999999999999988877
Q ss_pred ---------------------------------------------------------------------cCCCCCCCHHH
Q 040809 88 ---------------------------------------------------------------------QDYKDDMTRQE 98 (161)
Q Consensus 88 ---------------------------------------------------------------------~~y~~~mt~ee 98 (161)
+.|+++||++|
T Consensus 148 la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eE 227 (294)
T 1q5r_H 148 LASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEET 227 (294)
T ss_dssp HHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHH
Confidence 24679999999
Q ss_pred HHHHHHHHHHHhhccCCCCCC--cE-----EEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCC
Q 040809 99 AVQLALKVLRKTMDSTSLTSE--KL-----ELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPA 157 (161)
Q Consensus 99 ai~la~~al~~~~~~~~~~~~--~i-----ei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~ 157 (161)
|++++++||..++++|..++. ++ +|++|+++ .|++++++||++++.++.++..+
T Consensus 228 Ai~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~-----g~~~l~~~ei~~~l~~i~~~~~~ 288 (294)
T 1q5r_H 228 ALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA-----GAVHVSEETTSELARRIVAERTE 288 (294)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT-----EEEECCHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECC-----CEEEcCHHHHHHHHHHHHHHhhh
Confidence 999999999999998777653 36 99999976 49999999999999999666543
No 39
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.88 E-value=9e-22 Score=155.86 Aligned_cols=114 Identities=15% Similarity=0.244 Sum_probs=105.2
Q ss_pred ceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Q 040809 17 RLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------- 87 (161)
Q Consensus 17 rl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------- 87 (161)
.+.-|.|. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 31 Tivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~ 110 (261)
T 3nzj_H 31 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQ 110 (261)
T ss_dssp CEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred eEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHH
Confidence 46666666 6 99999999998777777899999999999999999999999999999999999999999887
Q ss_pred ----------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHH
Q 040809 88 ----------------------------------------------------------QDYKDDMTRQEAVQLALKVLRK 109 (161)
Q Consensus 88 ----------------------------------------------------------~~y~~~mt~eeai~la~~al~~ 109 (161)
+.|+++||+|||++++++||..
T Consensus 111 ~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~ 190 (261)
T 3nzj_H 111 MLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQA 190 (261)
T ss_dssp HHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999
Q ss_pred hhccCCCCCCcEEEEEEEeCC
Q 040809 110 TMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 110 ~~~~~~~~~~~iei~ii~~~~ 130 (161)
++.+|..++++++|++|++++
T Consensus 191 a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 191 GIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp HHHHCTTCCSCEEEEEEETTS
T ss_pred HHhhCCCCCCcEEEEEEECCC
Confidence 999988899999999999985
No 40
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.88 E-value=1.6e-22 Score=157.45 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=114.5
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHH-----HhCCCc-
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAY-----AYQEPI- 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~-----~~~~~i- 87 (161)
+.+.-|.+. | |||+|+|.+.+.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++ .+++++
T Consensus 9 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (233)
T 1ryp_N 9 TSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALE 88 (233)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCC
T ss_pred ceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCC
Confidence 346677777 5 99999999987666666899999999999999999999999999999999999999 899887
Q ss_pred --------------------------------------------------------------------cCCCC-----CC
Q 040809 88 --------------------------------------------------------------------QDYKD-----DM 94 (161)
Q Consensus 88 --------------------------------------------------------------------~~y~~-----~m 94 (161)
+.|++ +|
T Consensus 89 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~m 168 (233)
T 1ryp_N 89 PSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKT 168 (233)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCC
Confidence 36788 99
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 040809 95 TRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147 (161)
Q Consensus 95 t~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~ 147 (161)
|++||++++++||..+++++..++.+++|++|+++. .++.++++||+++
T Consensus 169 s~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~----g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 169 TVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT----GLTFKKNLQVENM 217 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT----EEEEEEEEECCSC
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCC----CeEEcChHhcccc
Confidence 999999999999999999998999999999999874 4899998888765
No 41
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.87 E-value=7.5e-22 Score=153.90 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=106.8
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc--------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI-------- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i-------- 87 (161)
+.-|.+. | |||+|+|.++++++.+++.+|||+|++||+|++||+.+|++.+++++|.+++.|++.+++++
T Consensus 3 ivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~ 82 (234)
T 1iru_I 3 IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRM 82 (234)
T ss_dssp EEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3445565 6 99999999999988877889999999999999999999999999999999999999999987
Q ss_pred ---------------------------------------------------------cCCCCCCCHHHHHHHHHHHHHHh
Q 040809 88 ---------------------------------------------------------QDYKDDMTRQEAVQLALKVLRKT 110 (161)
Q Consensus 88 ---------------------------------------------------------~~y~~~mt~eeai~la~~al~~~ 110 (161)
+.|+++||++||++++++||..+
T Consensus 83 l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a 162 (234)
T 1iru_I 83 LKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAG 162 (234)
T ss_dssp HHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHH
T ss_pred HHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999999
Q ss_pred hccCCCCCCcEEEEEEEeCCCCceeEEECCH
Q 040809 111 MDSTSLTSEKLELAEVFLLPSGKVKYRICSP 141 (161)
Q Consensus 111 ~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~ 141 (161)
++++..++++++|++|+++ .++.+.+
T Consensus 163 ~~~d~~sg~~i~v~vi~k~-----g~~~~~~ 188 (234)
T 1iru_I 163 IFNDLGSGSNIDLCVISKN-----KLDFLRP 188 (234)
T ss_dssp HHHCTTCCSCEEEEEEETT-----EEECCSE
T ss_pred HHhcccCCCCEEEEEEECC-----cEEEEcc
Confidence 9998888999999999987 3555543
No 42
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.87 E-value=2e-22 Score=155.40 Aligned_cols=127 Identities=12% Similarity=0.097 Sum_probs=112.5
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHH-HhCCCc-----
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAY-AYQEPI----- 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~-~~~~~i----- 87 (161)
+.+.-|.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++ .+++++
T Consensus 9 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~l 88 (219)
T 1iru_N 9 TSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAI 88 (219)
T ss_dssp CCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHH
T ss_pred ceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 346667777 5 99999999986666556899999999999999999999999999999999999998 888887
Q ss_pred ---------------------------------------------------------------cCCCC--CCCHHHHHHH
Q 040809 88 ---------------------------------------------------------------QDYKD--DMTRQEAVQL 102 (161)
Q Consensus 88 ---------------------------------------------------------------~~y~~--~mt~eeai~l 102 (161)
+.|++ +||++||+++
T Consensus 89 a~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l 168 (219)
T 1iru_N 89 HSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDL 168 (219)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 24678 9999999999
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 040809 103 ALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147 (161)
Q Consensus 103 a~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~ 147 (161)
+++||..+++++..++++++|++|+++ .++.++++||+..
T Consensus 169 ~~~al~~~~~~d~~sg~~i~v~vi~~~-----g~~~~~~~~i~~~ 208 (219)
T 1iru_N 169 VERCMRVLYYRDARSYNRFQTATVTEK-----GVEIEGPLSTETN 208 (219)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETT-----EEEEEEEECCCCC
T ss_pred HHHHHHHHHHhcCcCCCcEEEEEEcCC-----CEEEcCCeeccch
Confidence 999999999998899999999999987 4899998887653
No 43
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.87 E-value=2.3e-21 Score=148.03 Aligned_cols=114 Identities=13% Similarity=0.323 Sum_probs=104.3
Q ss_pred CceeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc------
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI------ 87 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i------ 87 (161)
+.+.-|.+. | |||+|+|.+++.++.+++.+||++|++||+|++||+.+|++.+++++|.+++.|++++++ +
T Consensus 10 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la 88 (205)
T 1ryp_H 10 ASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAA 88 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 447778887 5 999999999986666668899999999999999999999999999999999999999998 7
Q ss_pred ------------------------------------------------------------cCCCCCCCHHHHHHHHHHHH
Q 040809 88 ------------------------------------------------------------QDYKDDMTRQEAVQLALKVL 107 (161)
Q Consensus 88 ------------------------------------------------------------~~y~~~mt~eeai~la~~al 107 (161)
+.|+++||++||++++++||
T Consensus 89 ~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 168 (205)
T 1ryp_H 89 SVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 168 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999
Q ss_pred HHhhccCCCCCCcEEEEEEEeCC
Q 040809 108 RKTMDSTSLTSEKLELAEVFLLP 130 (161)
Q Consensus 108 ~~~~~~~~~~~~~iei~ii~~~~ 130 (161)
..+++++..++++++|++|++++
T Consensus 169 ~~a~~~d~~sg~~i~v~vi~~~g 191 (205)
T 1ryp_H 169 SQAIKWDGSSGGVIRMVVLTAAG 191 (205)
T ss_dssp HHHHHHBTTCCSCEEEEEEETTE
T ss_pred HHHHHhCCccCCeEEEEEEcCCC
Confidence 99999988899999999999875
No 44
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.87 E-value=3.7e-22 Score=158.38 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=112.3
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHH-----HhCCCc---
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAY-----AYQEPI--- 87 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~-----~~~~~i--- 87 (161)
+.-|.+. | |||+|+|.+.+.++.+++.+|||+|++||+|++||+.+|++.|++++|.+++.|++ .+++++
T Consensus 44 ~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~ 123 (266)
T 1g0u_M 44 VISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPS 123 (266)
T ss_dssp EEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHH
T ss_pred EEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHH
Confidence 5555555 5 99999999987666666899999999999999999999999999999999999998 888887
Q ss_pred ------------------------------------------------------------------cCCCC-----CCCH
Q 040809 88 ------------------------------------------------------------------QDYKD-----DMTR 96 (161)
Q Consensus 88 ------------------------------------------------------------------~~y~~-----~mt~ 96 (161)
+.|++ +||+
T Consensus 124 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~ 203 (266)
T 1g0u_M 124 YIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTV 203 (266)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCH
T ss_pred HHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCH
Confidence 36788 9999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECCHHHHHHH
Q 040809 97 QEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICSPESLTML 147 (161)
Q Consensus 97 eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~ 147 (161)
+||++++++||..+++++..++.+++|++|+++. .|+.++++||+++
T Consensus 204 eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~----g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 204 QVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT----GLTFKKNLQVENM 250 (266)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT----EEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCC----CeEEcCHHHhhhh
Confidence 9999999999999999999999999999999874 4899998888765
No 45
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.87 E-value=2.1e-21 Score=147.74 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=103.6
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCc---------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQARRYAYAYQEPI--------- 87 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i--------- 87 (161)
.-|.+. | |||+|+|.+++.++.+++.+|||+|++||+|++||+.+|++.+++++|.+++.|++++++++
T Consensus 5 vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~ 84 (201)
T 1iru_K 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFT 84 (201)
T ss_dssp EEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred EEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555 5 89999999986555556899999999999999999999999999999999999999999876
Q ss_pred ------------------------------------------------------------cCCCCCCCHHHHHHHHHHHH
Q 040809 88 ------------------------------------------------------------QDYKDDMTRQEAVQLALKVL 107 (161)
Q Consensus 88 ------------------------------------------------------------~~y~~~mt~eeai~la~~al 107 (161)
+.|+++||++||++++++||
T Consensus 85 ~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 164 (201)
T 1iru_K 85 RRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCL 164 (201)
T ss_dssp HHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 35899999999999999999
Q ss_pred HHhhccCCCCCCcEEEEEEEeCCCCceeEEECC
Q 040809 108 RKTMDSTSLTSEKLELAEVFLLPSGKVKYRICS 140 (161)
Q Consensus 108 ~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~ 140 (161)
..+.+++..++.+++|++|++++ ++.+.
T Consensus 165 ~~a~~rd~~sg~~i~v~vi~~~g-----~~~~~ 192 (201)
T 1iru_K 165 EELQKRFILNLPTFSVRIIDKNG-----IHDLD 192 (201)
T ss_dssp HHHHHTBCBCCCCEEEEEEETTE-----EECCC
T ss_pred HHHHhhccccCCceEEEEEcCCC-----eEEee
Confidence 99999998999999999999873 66654
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.68 E-value=3.5e-17 Score=121.92 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=88.7
Q ss_pred eeeEecc-e-EEEEEcccCCCCcccCCCCCceEEe-cCceEEEEeccHHHHHHHHHHHHHHHHHHHHHh-----------
Q 040809 18 LYQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKI-DDHVACAVAGIMSDANILINTARVQARRYAYAY----------- 83 (161)
Q Consensus 18 l~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~----------- 83 (161)
+.-|-+. | |||+|+|.+++.++.+++.+|||+| ++|++|++||+.+|++.|.+++|.+++.|++..
T Consensus 3 ~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (174)
T 1g3k_A 3 IVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDW 82 (174)
T ss_dssp EEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445555 5 9999999998866666789999999 999999999999999999999999998885311
Q ss_pred -----CCCc--------------------------------------------cCCC-CCCCHHHHHHHHHHHHHHhhcc
Q 040809 84 -----QEPI--------------------------------------------QDYK-DDMTRQEAVQLALKVLRKTMDS 113 (161)
Q Consensus 84 -----~~~i--------------------------------------------~~y~-~~mt~eeai~la~~al~~~~~~ 113 (161)
..++ +.|+ ++||.+ +++.+||..+.++
T Consensus 83 ~~~~~~r~~~~~l~g~d~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~r 159 (174)
T 1g3k_A 83 RTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDI 159 (174)
T ss_dssp HHSTTGGGCCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHH
T ss_pred HhccCcCcceEEEEEECCCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHh
Confidence 1111 2467 999965 6899999999999
Q ss_pred CCCCCCcEEEEEEE
Q 040809 114 TSLTSEKLELAEVF 127 (161)
Q Consensus 114 ~~~~~~~iei~ii~ 127 (161)
|..++++++|++|+
T Consensus 160 d~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 160 CVFTNTNFTIEELP 173 (174)
T ss_dssp CTTCCSCCEEEEEC
T ss_pred ccccCCceEEEEec
Confidence 99999999999985
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.65 E-value=2.6e-16 Score=117.97 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=90.6
Q ss_pred CceeeEecc-e-EEEEEcccCCCCc-ccCCCCCceEEe-cCceEEEEeccHHHHHHHHHHHHHHHHHHH---H-------
Q 040809 16 GRLYQVDYM-G-CLVGENNVTSKLL-QTSTSAEKMYKI-DDHVACAVAGIMSDANILINTARVQARRYA---Y------- 81 (161)
Q Consensus 16 Grl~qveya-G-Vlaadkr~~~~l~-~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~---~------- 81 (161)
+.+.-|.+. | |||+|+|.+.+.+ +.+++.+|||+| ++|++|++||+.+|++.|.+++|.+++.|+ .
T Consensus 6 tTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~g~~~~~~~~l~ 85 (180)
T 2z3b_A 6 TTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELA 85 (180)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred eEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 457888888 5 9999999998654 556689999999 999999999999999999999999999986 1
Q ss_pred ----Hh--CCCc-------------------------------------------cCCCC---CCCHHHHHHHHHHHHHH
Q 040809 82 ----AY--QEPI-------------------------------------------QDYKD---DMTRQEAVQLALKVLRK 109 (161)
Q Consensus 82 ----~~--~~~i-------------------------------------------~~y~~---~mt~eeai~la~~al~~ 109 (161)
.+ .+|. +.|++ +||.|| ++.+||..
T Consensus 86 ~~~~~~~~~rp~~~~~lvad~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~ 162 (180)
T 2z3b_A 86 KEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALET 162 (180)
T ss_dssp HHHHHCTTGGGCCCCEEEECSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHH
T ss_pred HHHHhhhCcCcceEEEEEEcCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHH
Confidence 11 1111 24677 999999 46799999
Q ss_pred hhccCCCCCCcEEEEEE
Q 040809 110 TMDSTSLTSEKLELAEV 126 (161)
Q Consensus 110 ~~~~~~~~~~~iei~ii 126 (161)
+.++|..++++++|.+|
T Consensus 163 a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 163 AGEICVYTNDQIILEEL 179 (180)
T ss_dssp HHHHCTTCCSCCEEEEE
T ss_pred HHHhcCccCCeEEEEEE
Confidence 99999999999999988
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.61 E-value=3.5e-16 Score=116.09 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=86.4
Q ss_pred eeEecc-e-EEEEEcccCCCCcccCCCCCceEEe-cCceEEEEeccHHHHHHHHHHHHHHHHHHHH--------------
Q 040809 19 YQVDYM-G-CLVGENNVTSKLLQTSTSAEKMYKI-DDHVACAVAGIMSDANILINTARVQARRYAY-------------- 81 (161)
Q Consensus 19 ~qveya-G-Vlaadkr~~~~l~~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~-------------- 81 (161)
.-|.+. | |||+|+|.+.+.++.+++.+|||+| ++|++|++||+.+|++.+++++|.+++.|++
T Consensus 4 vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (171)
T 1m4y_A 4 LVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWR 83 (171)
T ss_dssp EEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445555 5 9999999998766666689999999 9999999999999999999999999998751
Q ss_pred Hh--CCCc-------------------------------------------cCCC-CCCCHHHHHHHHHHHHHHhhccCC
Q 040809 82 AY--QEPI-------------------------------------------QDYK-DDMTRQEAVQLALKVLRKTMDSTS 115 (161)
Q Consensus 82 ~~--~~~i-------------------------------------------~~y~-~~mt~eeai~la~~al~~~~~~~~ 115 (161)
.+ ..|. +.|+ ++||. ++++++||..+.+||.
T Consensus 84 ~~~~~~~~~~~~lv~D~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~ 160 (171)
T 1m4y_A 84 TDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICI 160 (171)
T ss_dssp HCTTGGGCCCEEEEECSSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCT
T ss_pred HhCCCCceEEEEEEEcCCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCc
Confidence 11 1111 3467 89997 5689999999999999
Q ss_pred CCCCcEEEEEE
Q 040809 116 LTSEKLELAEV 126 (161)
Q Consensus 116 ~~~~~iei~ii 126 (161)
.++++++|.++
T Consensus 161 ~sg~~i~v~~~ 171 (171)
T 1m4y_A 161 YTNQNIVIEEV 171 (171)
T ss_dssp TCCSCCEEEEC
T ss_pred ccCCeEEEEEC
Confidence 99999999864
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=43.67 E-value=65 Score=23.61 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECC
Q 040809 90 YKDDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICS 140 (161)
Q Consensus 90 y~~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~ 140 (161)
-.+.+|+++|..++..++..+.++ +..+.|.|++..++ -..|.+++
T Consensus 61 ~~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~-lla~~RmD 106 (192)
T 3fpw_A 61 QSTHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGN-TLVTLRGD 106 (192)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC-EEEEEECT
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCC-EEEEEecC
Confidence 457899999999999999999875 45899999987642 23455553
No 50
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=39.84 E-value=10 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=14.9
Q ss_pred CCCCCcccCCCCceeeEecc
Q 040809 5 YDRQTTVFSPEGRLYQVDYM 24 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qveya 24 (161)
|...+.+|+|+|.++.++--
T Consensus 4 ~~~~i~v~tP~G~~~~lp~G 23 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIG 23 (78)
T ss_dssp --CEEEEECTTSCEEEEETT
T ss_pred cCceEEEECCCCCEEEecCC
Confidence 45578899999999887653
No 51
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=37.45 E-value=49 Score=22.89 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEeCCCCceeEEECC
Q 040809 92 DDMTRQEAVQLALKVLRKTMDSTSLTSEKLELAEVFLLPSGKVKYRICS 140 (161)
Q Consensus 92 ~~mt~eeai~la~~al~~~~~~~~~~~~~iei~ii~~~~~g~~~~~~l~ 140 (161)
+.+|+++|..++..++..+.++ +..+.|+|++..+. ...|.+++
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~-ll~~~rmd 53 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGN-TLLIQRMD 53 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC-EEEEEECT
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCC-EEEEEECC
Confidence 4589999999999999998874 55899999986542 23455554
No 52
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=36.10 E-value=44 Score=22.48 Aligned_cols=58 Identities=5% Similarity=-0.001 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhccC--C------CCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhc
Q 040809 92 DDMTRQEAVQLALKVLRKTMDST--S------LTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFG 152 (161)
Q Consensus 92 ~~mt~eeai~la~~al~~~~~~~--~------~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~ 152 (161)
...+.+++ .-++.-|...+... . -..+.+-|.|++++++ ...|.++++|+..++.++.
T Consensus 33 ~~~~~eel-~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~Tg--EVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 33 HQVSYTNL-AEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTN--EVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp CCCCHHHH-HHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTT--EEEEEECHHHHHHHHHHHH
T ss_pred ccCCHHHH-HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCC--cEEEeCChHHHHHHHHHHH
Confidence 34555553 45555555555321 0 1245788999998763 2679999999998887764
No 53
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=32.77 E-value=8.8 Score=26.26 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=12.6
Q ss_pred CCCCCcccCCCCceeeE
Q 040809 5 YDRQTTVFSPEGRLYQV 21 (161)
Q Consensus 5 y~~~~~~fsp~Grl~qv 21 (161)
.+...|.|+|+||+.--
T Consensus 55 m~h~vTfF~~~Grl~~h 71 (138)
T 3rj2_X 55 MRHRVTFFNATGRYITH 71 (138)
T ss_dssp CEEEEEEECTTSCEEEE
T ss_pred ceeEEEEEcCCCcEEEE
Confidence 35568999999986543
No 54
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=25.35 E-value=54 Score=17.89 Aligned_cols=16 Identities=31% Similarity=0.248 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHH
Q 040809 92 DDMTRQEAVQLALKVL 107 (161)
Q Consensus 92 ~~mt~eeai~la~~al 107 (161)
|+||.+|-+.||++--
T Consensus 2 p~mtEEEq~ALA~rmS 17 (45)
T 3a1q_C 2 PLGSEEEQFALALKMS 17 (45)
T ss_dssp CCSCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHh
Confidence 7899999888887643
No 55
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=23.79 E-value=42 Score=16.33 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=10.4
Q ss_pred ECCHHHHHHHHHH
Q 040809 138 ICSPESLTMLLEN 150 (161)
Q Consensus 138 ~l~~~ei~~~l~~ 150 (161)
.|++++|++++.+
T Consensus 12 mlspddi~qw~s~ 24 (28)
T 2b3g_B 12 MLSPDDIEQWFTE 24 (28)
T ss_dssp GCCHHHHHHHHHC
T ss_pred hcChHHHHHHhhc
Confidence 5889999988753
No 56
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=22.64 E-value=55 Score=16.16 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=10.7
Q ss_pred eEEECCHHHHHHHHHHh
Q 040809 135 KYRICSPESLTMLLENF 151 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~ 151 (161)
...++++.+|+++|++.
T Consensus 5 gvtrfdekqieelldnc 21 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNC 21 (31)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 46789999999999865
No 57
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=21.79 E-value=77 Score=19.99 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.9
Q ss_pred eEEECCHHHHHHHHHHhcc
Q 040809 135 KYRICSPESLTMLLENFGV 153 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~~~ 153 (161)
....|+++|.+++|++++-
T Consensus 19 kH~vLs~eE~~~ll~~y~i 37 (84)
T 4ayb_H 19 KHEVLSIDEAYKILKELGI 37 (84)
T ss_dssp EEEECCHHHHHHHHHHHTC
T ss_pred CeEECCHHHHHHHHHHhcC
Confidence 7899999999999998864
No 58
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=21.51 E-value=93 Score=19.33 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=17.0
Q ss_pred eEEECCHHHHHHHHHHhcc
Q 040809 135 KYRICSPESLTMLLENFGV 153 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~~~ 153 (161)
....|+++|.+++|+++.-
T Consensus 13 kH~iLs~eEk~~lL~~y~i 31 (77)
T 1eik_A 13 EHVILNESEAKRVLKELDA 31 (77)
T ss_dssp EEEEECHHHHHHHHHHTTC
T ss_pred CEEEcCHHHHHHHHHHcCC
Confidence 7889999999999999864
No 59
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=21.20 E-value=70 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.7
Q ss_pred eEEECCHHHHHHHHHHhcc
Q 040809 135 KYRICSPESLTMLLENFGV 153 (161)
Q Consensus 135 ~~~~l~~~ei~~~l~~~~~ 153 (161)
....|+++|.+++|+++.-
T Consensus 11 kH~iLs~eEk~~lL~~y~i 29 (78)
T 1hmj_A 11 KHEIVPKEEVEEILKRYNI 29 (78)
T ss_pred CeEECCHHHHHHHHHHcCC
Confidence 6789999999999998863
No 60
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=21.19 E-value=28 Score=21.67 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=21.3
Q ss_pred CCCCcEEEEEEEeCCCCceeEEECCHHHHHHHHHHhcccCCCC
Q 040809 116 LTSEKLELAEVFLLPSGKVKYRICSPESLTMLLENFGVAQPAS 158 (161)
Q Consensus 116 ~~~~~iei~ii~~~~~g~~~~~~l~~~ei~~~l~~~~~~~~~~ 158 (161)
+.+-.+-+.+++.. | ....+....++++|+++....++.
T Consensus 37 LCdaeV~livfs~~--g--k~~~~~s~~~~~il~ry~~~~~~~ 75 (77)
T 1egw_A 37 LCDCEIALIIFNSS--N--KLFQYASTDMDKVLLKYTEYNEPH 75 (77)
T ss_dssp HTTCEEEEEEECTT--C--CEEEEESSCHHHHHHHHHHC----
T ss_pred ccCCeEEEEEECCC--C--CEeeCCCCCHHHHHHHHHhccCCC
Confidence 44445555555554 3 344555567999999887665544
No 61
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.00 E-value=21 Score=22.68 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=18.1
Q ss_pred EECCHHHHHHHHHHhcccCCCCCC
Q 040809 137 RICSPESLTMLLENFGVAQPASEV 160 (161)
Q Consensus 137 ~~l~~~ei~~~l~~~~~~~~~~~~ 160 (161)
+.-+.++|+++++++.++.|+-||
T Consensus 58 kvkddddidkwidkikkerpqlev 81 (110)
T 2lta_A 58 KVKDDDDIDKWIDKIKKERPQLEV 81 (110)
Confidence 344567789999999888887665
Done!