BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040810
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 61/388 (15%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSF-----ATV 191
+Y T + TP +V+D G +W+ C + + P + R+ ++
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDCD-----QNYVSSTYRPVRCRTSQCSLSGSI 75
Query: 192 PCRSPLCRKLDSSGCNRRNTC-LYQVSYGDGSITVGDFSTETLTFRGT---------RVA 241
C C GCN NTC ++ + + T G+ + + ++ T V
Sbjct: 76 ACGD--CFNGPRPGCNN-NTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP 132
Query: 242 RVALGCGHDN--EGLFVXXXXXXXXXXXXXSFPTQ--TGRRFNRKFSYCLVDRSTSAKPS 297
R C + + L + P+Q + F RKF+ CL ++S S
Sbjct: 133 RFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSN--S 190
Query: 298 SMVFGDSAVS---------RTARFTPLLANP----------KLDTFYYVELVGISVGGAH 338
++FG+ + +T +TPLL NP + Y++ + I + +
Sbjct: 191 VIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKIN-SK 249
Query: 339 VRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAF--RAGASSLKRAPDFSLF 396
+ + SL + AG GG I + T L Y A+ +AF + A ++ R + F
Sbjct: 250 IVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF 309
Query: 397 DTCFD----LSGKTEVKVPTVVLHFRGADV--SLPATNYLIPVDSSGTFCFAFAGTMSGL 450
CF LS + VP++ L + V ++ +N ++ ++ + C S L
Sbjct: 310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN-VVCLGVVDGGSNL 368
Query: 451 S---IIGNIQQQGFRVVYDLAASRIGFA 475
+IG Q + V +DLA SR+GF+
Sbjct: 369 RTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 61/388 (15%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSF-----ATV 191
+Y T + TP +V+D G +W+ C + + P + R+ ++
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDCD-----QNYVSSTYRPVRCRTSQCSLSGSI 75
Query: 192 PCRSPLCRKLDSSGCNRRNTC-LYQVSYGDGSITVGDFSTETLTFRGT---------RVA 241
C C GCN NTC ++ + + T G+ + + ++ T V
Sbjct: 76 ACGD--CFNGPRPGCNN-NTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP 132
Query: 242 RVALGCGHDN--EGLFVXXXXXXXXXXXXXSFPTQ--TGRRFNRKFSYCLVDRSTSAKPS 297
R C + + L + P+Q + F RKF+ CL ++S S
Sbjct: 133 RFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSN--S 190
Query: 298 SMVFGDSAVS---------RTARFTPLLANP----------KLDTFYYVELVGISVGGAH 338
++FG+ + +T +TPLL NP + Y++ + I + +
Sbjct: 191 VIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKIN-SK 249
Query: 339 VRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAF--RAGASSLKRAPDFSLF 396
+ + SL + AG GG I + T L Y A+ +AF + A ++ R + F
Sbjct: 250 IVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF 309
Query: 397 DTCFD----LSGKTEVKVPTVVLHFRGADV--SLPATNYLIPVDSSGTFCFAFAGTMSGL 450
CF LS + VP++ L + V ++ +N ++ ++ + C S L
Sbjct: 310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN-VVCLGVVDGGSNL 368
Query: 451 S---IIGNIQQQGFRVVYDLAASRIGFA 475
+IG Q + V +DLA SR+GF+
Sbjct: 369 RTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 73/362 (20%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPL 197
YF + +GTPP+ ++ DTGS +W+ C+ + F+P++S +++T
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYST------- 66
Query: 198 CRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-FV 256
N + + YG GS+T G F +TLT + +V G + G FV
Sbjct: 67 ------------NGQTFSLQYGSGSLT-GFFGYDTLTVQSIQVPNQEFGLSENEPGTNFV 113
Query: 257 XXXXXXXXXXXXXSFP-----------TQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSA 305
+ Q G + FS L ++ S+ ++VFG
Sbjct: 114 YAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSG-GAVVFG--G 170
Query: 306 VSRTARFTPLLANPKLDTFYY---VE--LVGISVGGAHVRGITASLFKLDPAGNGGVIID 360
V + + P Y+ +E L+G G G A I+D
Sbjct: 171 VDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQA-------------IVD 217
Query: 361 SGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGA 420
+GTS+ + + AL A A + F ++ + +P++ G
Sbjct: 218 TGTSLLTVPQQYMSALLQATGAQEDEYGQ----------FLVNCNSIQNLPSLTFIINGV 267
Query: 421 DVSLPATNYLIPVDSSGTFCFA-----FAGTMSG--LSIIGNIQQQGFRVVYDLAASRIG 473
+ LP ++Y++ S+ +C + + +G L I+G++ + + VYDL +R+G
Sbjct: 268 EFPLPPSSYIL---SNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVG 324
Query: 474 FA 475
FA
Sbjct: 325 FA 326
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 189 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 241
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 242 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 296
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 356
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 357 FYVVFDRARKRIGFAVSAC 375
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 17 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 60
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 194 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 246
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 247 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 301
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 302 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 361
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 362 FYVVFDRARKRIGFAVSAC 380
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 22 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 65
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 191 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 243
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 244 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 298
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 299 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 358
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 359 FYVVFDRARKRIGFAVSAC 377
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 19 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 62
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 192 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 244
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 245 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 299
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 300 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 359
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 360 FYVVFDRARKRIGFAVSAC 378
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 20 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 63
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 194 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 246
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 247 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 301
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 302 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 361
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 362 FYVVFDRARKRIGFAVSAC 380
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 22 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 65
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 192 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 244
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 245 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 299
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 300 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 359
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 360 FYVVFDRARKRIGFAVSAC 378
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 20 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 63
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 190 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 242
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 243 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 297
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 298 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 357
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 358 FYVVFDRARKRIGFAVSAC 376
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 18 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 61
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 192 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 244
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 245 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 299
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 300 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 359
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 360 FYVVFDRARKRIGFAVSAC 378
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 20 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 63
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 189 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 241
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 242 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 296
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 356
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 357 FYVVFDRARKRIGFAVSAC 375
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 17 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 60
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 196 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 248
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 249 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 303
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 304 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 363
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 364 FYVVFDRARKRIGFAVSAC 382
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 24 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 67
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 213 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 265
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 266 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 320
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 321 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 380
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 381 FYVVFDRARKRIGFAVSAC 399
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 41 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 84
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSCGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 179 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 231
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 232 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 286
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 287 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 346
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 347 FYVVFDRARKRIGFAVSAC 365
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 7 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 50
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 189 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 241
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 242 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 296
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 356
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 357 FYVVFDRARKRIGFAVSAC 375
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 17 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 60
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 236 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 288
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 289 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 343
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 344 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 403
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 404 FYVVFDRARKRIGFAVSAC 422
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 64 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 107
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 213 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 265
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 266 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 320
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 321 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 380
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 381 FYVVFDRARKRIGFAVSAC 399
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 41 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 84
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 199 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 251
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 252 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 306
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 307 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 366
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 367 FYVVFDRARKRIGFAVSAC 385
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 27 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 70
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 179 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 231
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 232 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 286
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 287 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 346
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 347 FYVVFDRARKRIGFAVSAC 365
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 7 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 50
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 229
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 230 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 284
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 344
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 345 FYVVFDRARKRIGFAVSAC 363
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 5 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 48
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 236 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 288
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 289 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 343
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 344 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 403
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 404 FYVVFDRARKRIGFAVSAC 422
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 64 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 107
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 174 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 226
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 227 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 281
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 282 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 341
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 342 FYVVFDRARKRIGFAVSAC 360
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 2 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 45
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 235 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 287
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 288 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 342
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 343 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 402
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 403 FYVVFDRARKRIGFAVSAC 421
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 63 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 106
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 174 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 226
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 227 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 281
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 282 PVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 341
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 342 FYVVFDRARKRIGFAVSAC 360
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 2 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 45
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 173 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 225
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 226 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 280
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 281 PVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 340
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 341 FYVVFDRARKRIGFAVSAC 359
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 1 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 44
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 179 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 231
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 232 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 286
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 287 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 346
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 347 FYVVFDRARKRIGFAVSAC 365
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 7 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 50
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 178 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 230
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 231 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 285
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 286 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 345
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 346 FYVVFDRARKRIGFAVSAC 364
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 6 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 49
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 180 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 232
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 233 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 287
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 288 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 347
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 348 FYVVFDRARKRIGFAVSAC 366
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 8 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 51
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 176 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 228
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 229 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 283
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 284 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 343
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 344 FYVVFDRARKRIGFAVSAC 362
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 4 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 47
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 189 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 241
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 242 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 296
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 356
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 357 FYVVFDRARKRIGFAVSAC 375
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 17 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 60
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 229
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 230 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 284
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 344
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 345 FYVVFDRARKRIGFAVSAC 363
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 5 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 48
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 182 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 234
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 235 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 289
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 290 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 349
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 350 FYVVFDRARKRIGFAVSAC 368
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 10 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 53
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 176 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 228
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 229 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 283
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 284 PVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 343
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 344 FYVVFDRARKRIGFAVSAC 362
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 4 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 47
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 229
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 230 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 284
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 344
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 345 FYVVFDRARKRIGFAVSAC 363
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 5 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 48
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 229
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 230 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 284
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 344
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 345 FYVVFDRARKRIGFAVSAC 363
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 5 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 48
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 189 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 241
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 242 ---IVDSGTTNLRLPKKVFEAAVASIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 296
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 297 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 356
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 357 FYVVFDRARKRIGFAVSAC 375
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 17 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 60
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 177 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 229
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 230 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 284
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 285 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 344
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 345 FYVVFDRARKRIGFAVSAC 363
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 5 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 48
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 182 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 234
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 235 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 289
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 290 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 349
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 350 FYVVFDRARKRIGFAVSAC 368
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 10 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 53
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 312 FTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371
+TP+ + + +Y V +V + + G ++ + + D + I+DSGT+ RL +
Sbjct: 182 YTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-----IVDSGTTNLRLPKK 231
Query: 372 AYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV-PTVVLHFRGA------D 421
+ A + +A ASS ++ PD F L + C+ +G T + P + L+ G
Sbjct: 232 VFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIFPVISLYLMGEVTNQSFR 289
Query: 422 VSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQGFRVVYDLAASRIGFAPR 477
+++ YL PV+ T C+ FA + S +++G + +GF VV+D A RIGFA
Sbjct: 290 ITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVS 349
Query: 478 GC 479
C
Sbjct: 350 AC 351
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 7 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 50
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSGT+ RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGTTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S + +G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTCMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 29/199 (14%)
Query: 298 SMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGN 354
SM+ G S + + +TP+ + + +Y V +V + + G ++ + + D +
Sbjct: 193 SMIIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLK-MDCKEYNYDKS-- 245
Query: 355 GGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFD--TCFDLSGKTEVKV- 410
I+DSG + RL + + A + +A ASS ++ PD F L + C+ +G T +
Sbjct: 246 ---IVDSGCTNLRLPKKVFEAAVKSIKA-ASSTEKFPDGFWLGEQLVCWQ-AGTTPWNIF 300
Query: 411 PTVVLHFRGA------DVSLPATNYLIPVDSSGTF---CFAFAGTMSGL-SIIGNIQQQG 460
P + L+ G +++ YL PV+ T C+ FA + S +++G + +G
Sbjct: 301 PVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 360
Query: 461 FRVVYDLAASRIGFAPRGC 479
F VV+D A RIGFA C
Sbjct: 361 FYVVFDRARKRIGFAVSAC 379
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168
++ L SG+ Y+ + VG+PP+ + +++DTGS + AP
Sbjct: 21 EMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAP 64
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 68/316 (21%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWI-----QCAPCKKCYSQTDPVFDPAKSRSFATVP 192
Y +++ VG+ + +++DTGS W+ QC C ++ F P+ S S+ +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNLG 71
Query: 193 CRSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRG-------------TR 239
+ + YGDGS + G + +T+T G T
Sbjct: 72 AA-------------------FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTS 112
Query: 240 VARVALGCGH-DNEGLFVXXXXXXXXXXXXXSFPTQTGRRFN-RKFSYCLVDRSTSAKPS 297
V + LG G+ NE ++ + P ++ R +Y L S SA+
Sbjct: 113 VDQGILGIGYTSNEAVY--DTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETG 170
Query: 298 SMVFGDSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357
+++FG A+++ L ++ + + + IS+ +++G + S G
Sbjct: 171 TIIFGG---VDNAKYSGKLVAEQVTS---SQALTISLASVNLKGSSFSF-------GDGA 217
Query: 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLF--DTCFDLSGKTEVKVPTVVL 415
++DSGT++T P+ A + A +AGA ++ A D L+ D D SG T V
Sbjct: 218 LLDSGTTLTYF--PSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSG-------TTVF 268
Query: 416 HF-RGADVSLPATNYL 430
+F GA +++P T Y+
Sbjct: 269 NFGNGAKITVPNTEYV 284
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 43/344 (12%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
+YF ++ +GTPP+ +V DTGS +W+ CK + FDP KS +F + P
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL--GKP 69
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEG-LF 255
L + YG GS+ G +T+T +G + G +F
Sbjct: 70 L-----------------SIHYGTGSME-GFLGYDTVTVSNIVDPNQTVGLSTEQPGEVF 111
Query: 256 VXXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPL 315
S ++ ++ ++DR A+ V+ D + + T
Sbjct: 112 TYSEFDGILGLAYPSLASE----YSVPVFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLG 166
Query: 316 LANPKLDT--FYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAY 373
+P T ++V + V +T + + G I+D+GTSV L P+
Sbjct: 167 AIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVGGCQAILDTGTSV--LFGPSS 224
Query: 374 IALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPV 433
L+ GA+ + FD++ +PTVV G D L + Y
Sbjct: 225 DILKIQMAIGATENRYGE--------FDVNCGNLRSMPTVVFEINGRDYPLSPSAY---T 273
Query: 434 DSSGTFCFA-FAG-TMSGLSIIGNIQQQGFRVVYDLAASRIGFA 475
FC + F G S L I+G++ + + V+D A +R+G A
Sbjct: 274 SKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLA 317
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPL 197
YF +G+GTPP+ ++ DTGS V+W+ P KC + CR+
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWV---PSSKCINSK---------------ACRAHS 56
Query: 198 CRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLT 234
+ S + N + YG GSIT G FS +++T
Sbjct: 57 MYESSDSSTYKENGTFGAIIYGTGSIT-GFFSQDSVT 92
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/363 (20%), Positives = 135/363 (37%), Gaps = 76/363 (20%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EY+ + +GTPP ++ DTGS +W+ + C F P +S ++
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVET----- 67
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
+ +D ++YG G + G +T++ G LG G F
Sbjct: 68 -GKTVD-------------LTYGTGGMR-GILGQDTVSVGGGSDPNQELGESQTEPGPF- 111
Query: 257 XXXXXXXXXXXXXSFPTQTGRR----FNRKFSYCLVDRST--------SAKPSSMVFG-- 302
++P+ F+ S LV++ A S ++ G
Sbjct: 112 -QAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGV 170
Query: 303 -DSAVSRTARFTPLLANPKLDTFYYVELVGISVGG--AHVRGITASLFKLDPAGNGGVII 359
+S + + + P+ A + ++ V L GI+V G A G A I+
Sbjct: 171 DNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTAACEGCQA-------------IV 213
Query: 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRG 419
D+GTS ++ P AL + + +S + + C + +P + G
Sbjct: 214 DTGTS--KIVAPVS-ALANIMKDIGASENQG---EMMGNCASVQ-----SLPDITFTING 262
Query: 420 ADVSLPATNYLIPVDSSGTFCFAFAGT------MSGLSIIGNIQQQGFRVVYDLAASRIG 473
LP + Y ++ FC + G+ S L I G++ + + +YD +++G
Sbjct: 263 VKQPLPPSAY---IEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVG 319
Query: 474 FAP 476
FAP
Sbjct: 320 FAP 322
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 46/349 (13%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP--CKKCYSQTDPVFDPAKSRSFATVPCRS 195
Y + +G+ + +++DTGS +W+ A C K P +S F C+
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPR--------PGQSADF----CKG 61
Query: 196 PLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDN---E 252
SS ++ + + YGDGS + G +T+ F G + + +
Sbjct: 62 KGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIPQ 121
Query: 253 GLFVXXXXXXXXXXXXXSFP-TQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTAR 311
G+ + P T + K +Y L S +A ++FG V +
Sbjct: 122 GILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQIIFG--GVDKAKY 179
Query: 312 FTPLLANPKL-DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
L+A P D + L + G ++ G N V++DSGT++T L +
Sbjct: 180 SGSLIAVPVTSDRELRITLNSLKAVGKNING------------NIDVLLDSGTTITYLQQ 227
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHF-RGADVSLPATNY 429
+ DAF+A S + F + D C SG TV +F A +S+PA+ +
Sbjct: 228 DVAQDIIDAFQAELKSDGQGHTFYVTD-C-QTSG-------TVDFNFDNNAKISVPASEF 278
Query: 430 LIPVDSSGTFCFAFAGTMSGLS---IIGNIQQQGFRVVYDLAASRIGFA 475
P+ + + + G+S I+G+ + +VYDL +I A
Sbjct: 279 TAPLSYANGQPYPKCQLLLGISDANILGDNFLRSAYLVYDLDDDKISLA 327
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 33/186 (17%)
Query: 312 FTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371
+TP+ K + +Y +E++ + +GG + + + D A I+DSGT++ RL +
Sbjct: 188 YTPI----KEEWYYQIEILKLEIGGQSLN-LDCREYNADKA-----IVDSGTTLLRLPQK 237
Query: 372 AYIALRDAFRAGASSLKRAPDFSL-FDT-----CFDLSGKTEVKVPTVVLHFRGADVS-- 423
+ A+ +A A AS + P+FS F T C+ S P + ++ R + S
Sbjct: 238 VFDAVVEAV-ARASLI---PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRS 293
Query: 424 -----LPATNYLIPVDSSGT----FCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGF 474
LP Y+ P+ +G + F + + + L +IG +GF V++D A R+GF
Sbjct: 294 FRITILPQL-YIQPMMGAGLNYECYRFGISPSTNAL-VIGATVMEGFYVIFDRAQKRVGF 351
Query: 475 APRGCA 480
A CA
Sbjct: 352 AASPCA 357
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 126 SVISGLAQGSGE-YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAK 184
+++ L SG Y+ + +GTPP+ + +++DTGS + P +S D FD +
Sbjct: 2 AMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTP----HSYIDTYFDTER 57
Query: 185 SRSF 188
S ++
Sbjct: 58 SSTY 61
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 132/371 (35%), Gaps = 59/371 (15%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPV----FDPAKSRSFATVP 192
EY + +GTP + ++ DTGS W+ P K C V FDP+ S +F
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWV---PHKGCTKSEGCVGSRFFDPSASSTFKATN 75
Query: 193 CRSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNE 252
L + G N Y + SI +GD + R N
Sbjct: 76 YN--LNITYGTGGANGL--------YFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNA 125
Query: 253 GLFVXXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVD-----------------RSTSAK 295
+F+ ++P T +Y V +T++
Sbjct: 126 DIFLDGLFGA-------AYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSG 178
Query: 296 PSSMVFG---DSAVSRTARFTPLLANPKLDTFYYVELVGISV-GGAHVRGITASLFKLDP 351
+VFG ++ + +T +++ F+ + GI+V G A VR F +D
Sbjct: 179 TGEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTIDT 238
Query: 352 AGNGGVIIDSGTS-VTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKV 410
N ++ S S + + P + + +S + + S SG + +
Sbjct: 239 GTNFFIMPSSAASKIVKAALPDATETQQGWVVPCASYQNSK--STISIVMQKSGSSSDTI 296
Query: 411 PTVVLHFRGADVSLPATNYLIPVDSSGTFC-FAFAGTMSGLSIIGNIQQQGFRVVYDLAA 469
++S+P + L+PVD S C F I+GN+ + F VYD
Sbjct: 297 ----------EISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFFVNVYDFGN 346
Query: 470 SRIGFAPRGCA 480
+RIGFAP A
Sbjct: 347 NRIGFAPLASA 357
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 135/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 67
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 68 -SQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 113 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 165
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 166 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 223
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C ++ +P +V G L + Y+
Sbjct: 224 PTSAIANIQSDIGAS---ENSDGEMVISCSSIA-----SLPDIVFTINGVQYPLSPSAYI 275
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 276 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 139/356 (39%), Gaps = 56/356 (15%)
Query: 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCR 194
+ +Y+T + +GTPP+ ++LDTGS +W+ C +D S S+
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 195 SPLCRKLDS-SGCNRRNTCLYQVSYGDGSITVGDFSTET----LTFRGTRVARVALGCGH 249
+ S G ++T +S GD +I DF+ T LTF + + LG G+
Sbjct: 72 FAIQYGTGSLEGYISQDT----LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGI-LGLGY 126
Query: 250 DNEGLFVXXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKP-SSMVFG---DSA 305
D Q ++F++ L D S + FG +S
Sbjct: 127 DT--------ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESK 178
Query: 306 VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSV 365
+ P+ + ++ V+ GI +G + + G ID+GTS+
Sbjct: 179 FKGDITWLPV----RRKAYWEVKFEGIGLGDEYAE-----------LESHGAAIDTGTSL 223
Query: 366 TRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLP 425
+T P+ +A GA K+ + + L T +P ++ +F G + ++
Sbjct: 224 --ITLPSGLAEMINAEIGA---KKG-----WTGQYTLDCNTRDNLPDLIFNFNGYNFTIG 273
Query: 426 ATNYLIPVDSSGTFCFA------FAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFA 475
+Y + V S C + F + L+I+G+ + + +YDL + +G A
Sbjct: 274 PYDYTLEVSGS---CISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 111
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 112 -SQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 156
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 157 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 209
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 210 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 267
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C + +P +V G L + Y+
Sbjct: 268 PTSAIANIQSDIGAS---ENSDGEMVISCSSID-----SLPDIVFTIDGVQYPLSPSAYI 319
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 320 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 368
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 67
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 68 -SQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 113 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 165
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 166 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 223
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C + +P +V G L + Y+
Sbjct: 224 PTSAIANIQSDIGAS---ENSDGEMVISCSSID-----SLPDIVFTINGVQYPLSPSAYI 275
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 276 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 111
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 112 -XQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 156
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 157 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 209
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 210 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 267
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C + +P +V G L + Y+
Sbjct: 268 PTSAIANIQSDIGAS---ENSDGEMVISCSSID-----SLPDIVFTIDGVQYPLSPSAYI 319
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 320 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 368
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 136/356 (38%), Gaps = 56/356 (15%)
Query: 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCR 194
+ +Y+T + +GTPP+ ++LDTGS +W+ C +D S S+
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 195 SPLCRKLDS-SGCNRRNTCLYQVSYGDGSITVGDFSTET----LTFRGTRVARVALGCGH 249
+ S G ++T +S GD +I DF+ T LTF + + LG G+
Sbjct: 72 FAIQYGTGSLEGYISQDT----LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGI-LGLGY 126
Query: 250 DNEGLFVXXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKP-SSMVFG---DSA 305
D Q ++F++ L D S + FG +S
Sbjct: 127 DT--------ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESK 178
Query: 306 VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSV 365
+ P+ + ++ V+ GI +G + + G ID+GTS+
Sbjct: 179 FKGDITWLPV----RRKAYWEVKFEGIGLGDEYAE-----------LESHGAAIDTGTSL 223
Query: 366 TRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLP 425
+T P+ +A GA + L T +P ++ +F G + ++
Sbjct: 224 --ITLPSGLAEMINAEIGAKKGSTGQ--------YTLDCNTRDNLPDLIFNFNGYNFTIG 273
Query: 426 ATNYLIPVDSSGTFCFA------FAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFA 475
+Y + V S C + F + L+I+G+ + + +YDL + +G A
Sbjct: 274 PYDYTLEVSGS---CISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 67
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 68 -XQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 113 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 165
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 166 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 223
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C + +P +V G L + Y+
Sbjct: 224 PTSAIANIQSDIGAS---ENSDGEMVISCSSID-----SLPDIVFTINGVQYPLSPSAYI 275
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 276 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 134/365 (36%), Gaps = 73/365 (20%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF + +G+PP+ ++ DTGS +W+ C +T F P++S +++ P +S
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ-PGQS- 81
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGS----ITVGDFSTETLTFRGTRVARVALGCGH--- 249
+ + YG GS I S E LT G + G
Sbjct: 82 -----------------FSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFV 124
Query: 250 --DNEGLFVXXXXXXXXXXXXXSFPTQTGRRFNR--KFSYCLVDRSTSAKPSSMVFG--- 302
+ +G+ F + FS + S ++FG
Sbjct: 125 DAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYD 184
Query: 303 DSAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHV---RGITASLFKLDPAGNGGVII 359
S S + + P+ ++ + L I VGG + G A I+
Sbjct: 185 HSHFSGSLNWVPVTKQ----AYWQIALDNIQVGGTVMFCSEGCQA-------------IV 227
Query: 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAP-DFSLFDTCFDLSGKTEVKVPTVVLHFR 418
D+GTS+ +T P+ D + +++ AP D C +L+ +P V
Sbjct: 228 DTGTSL--ITGPS-----DKIKQLQNAIGAAPVDGEYAVECANLN-----VMPDVTFTIN 275
Query: 419 GADVSLPATNY-LIPVDSSGTFCFA-FAGT-----MSGLSIIGNIQQQGFRVVYDLAASR 471
G +L T Y L+ FC + F G L I+G++ + F V+D +R
Sbjct: 276 GVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNR 335
Query: 472 IGFAP 476
+G AP
Sbjct: 336 VGLAP 340
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 73/362 (20%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWI--QCAPCKKCYSQTDPVFDPAKSRSFATVPCRS 195
Y + + VG+ + + +V+DTGS +W+ C+ Q DP F C++
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQ-DPNF------------CKN 60
Query: 196 PLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRG-------------TRVAR 242
SS ++ + + YGDG+ + G + +T+ F G T V +
Sbjct: 61 EGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTSTSVDQ 120
Query: 243 VALGCG---HDNEGLFVXXXXXXXXXXXXXSFP-TQTGRRFNRKFSYCLVDRSTSAKPSS 298
LG G H+ EG + + P T + K +Y L S A
Sbjct: 121 GILGIGYKTHEAEGNY-------------DNVPVTLKNQGIISKNAYSLYLNSRQATSGQ 167
Query: 299 MVFGDSAVSRTARFTPLLANPKL-DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357
++FG V L+A P D + L + V G + I A + V
Sbjct: 168 IIFG--GVDNAKYSGTLIALPVTSDNELRIHLNTVKVAG---QSINADV---------DV 213
Query: 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHF 417
++DSGT++T L + + AF + F L D C +LSG +
Sbjct: 214 LLDSGTTITYLQQGVADQVISAFNGQETYDANGNLFYLVD-C-NLSGSVDFAFD------ 265
Query: 418 RGADVSLPATNYLIPVDSSG----TFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIG 473
+ A +S+PA+ + P+ + C GT S +I+G+ + +VYDL + I
Sbjct: 266 KNAKISVPASEFTAPLYTEDGQVYDQCQLLFGT-SDYNILGDNFLRSAYIVYDLDDNEIS 324
Query: 474 FA 475
A
Sbjct: 325 LA 326
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 135/361 (37%), Gaps = 70/361 (19%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + +V DTGS +W+ C F+P S ++
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY-------- 64
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
+ + ++YG GS+T G +T+ G G G F+
Sbjct: 65 -----------QSTSETVSITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRR--FNRKFSYCLVDR--------STSAKPSSMVFGDSAV 306
+ +G F+ ++ LV + + S ++FG
Sbjct: 113 YYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFG---- 168
Query: 307 SRTARFTPLLANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIID 360
+D+ YY + V ++V G V IT + + A I+D
Sbjct: 169 -------------GIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVD 215
Query: 361 SGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGA 420
+GTS+ LT P GAS D + +C +S +P +V G
Sbjct: 216 TGTSL--LTGPTSPIANIQSDIGAS---ENSDGDMVVSCSAIS-----SLPDIVFTINGV 265
Query: 421 DVSLPATNYLIPVDSSGTFCFAFAG----TMSG-LSIIGNIQQQGFRVVYDLAASRIGFA 475
+P + Y++ S G+ F G T SG L I+G++ + + V+D A +++G A
Sbjct: 266 QYPVPPSAYIL--QSEGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVGLA 323
Query: 476 P 476
P
Sbjct: 324 P 324
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 67
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 68 -SQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 113 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 165
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 166 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 223
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C + +P +V G L + Y+
Sbjct: 224 PTSAIANIQSDIGAS---ENSDGEMVISCSSID-----SLPDIVFTIDGVQYPLSPSAYI 275
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 276 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 129/374 (34%), Gaps = 43/374 (11%)
Query: 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCR 194
+G ++ L TP V +++D + +W+ C + P + T C
Sbjct: 20 TGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCL 79
Query: 195 SPLCRKLDSSGCNRRNTC-LYQVSYGDGSITVGDFSTETLTFRGTRVARVALG------- 246
S C GC++ NTC L + +G+ + L T+ + LG
Sbjct: 80 S--CPAASRPGCHK-NTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQ 136
Query: 247 ----CGHD---NEGLFVXXXXXXXXXXXXXSFPTQTGRRF--NRKFSYCLVDRSTSAKPS 297
C +GL S P Q F R+F+ CL TS
Sbjct: 137 FLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSK--G 194
Query: 298 SMVFGDSA----------VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLF 347
+++FGD+ + FTPL L Y V + I + V +
Sbjct: 195 AIIFGDAPNNMRQFQNQDIFHDLAFTPLTI--TLQGEYNVRVNSIRINQHSVFPLNKISS 252
Query: 348 KLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTE 407
+ + +GG +I + T L + Y A F + + F CF+ +
Sbjct: 253 TIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINA 312
Query: 408 VKVPTVVLHFRGADVSLPATNYLIPVDSSGTFCFAFAGTMSG------LSIIGNIQQQGF 461
+V+ V + L+ G C G M+G +G Q +
Sbjct: 313 YPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCL---GVMNGGMQPRAEITLGARQLEEN 369
Query: 462 RVVYDLAASRIGFA 475
VV+DLA SR+GF+
Sbjct: 370 LVVFDLARSRVGFS 383
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 135/361 (37%), Gaps = 70/361 (19%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + +V DTGS +W+ C F+P S ++
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY-------- 64
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
+ + ++YG GS+T G +T+ G G G F+
Sbjct: 65 -----------QSTSETVSITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRR--FNRKFSYCLVDR--------STSAKPSSMVFGDSAV 306
+ +G F+ ++ LV + + S ++FG
Sbjct: 113 YYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFG---- 168
Query: 307 SRTARFTPLLANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIID 360
+D+ YY + V ++V G V IT + + A I+D
Sbjct: 169 -------------GIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVD 215
Query: 361 SGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGA 420
+GTS+ LT P GAS D + +C +S +P +V G
Sbjct: 216 TGTSL--LTGPTSPIANIQSDIGAS---ENSDGDMVVSCSAIS-----SLPDIVFTINGV 265
Query: 421 DVSLPATNYLIPVDSSGTFCFAFAG----TMSG-LSIIGNIQQQGFRVVYDLAASRIGFA 475
+P + Y++ S G+ F G T SG L I+G++ + + V+D A +++G A
Sbjct: 266 QYPVPPSAYIL--QSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGLA 323
Query: 476 P 476
P
Sbjct: 324 P 324
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 69
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQ--TDPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 46/349 (13%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EYF +G+GTP + ++ DTGS +W+ C F+P S +F
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----- 67
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFV 256
++L ++YG GS+T G +T+ G G G F+
Sbjct: 68 -XQEL-------------SITYGTGSMT-GILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
Query: 257 XXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTARFTPLL 316
++P+ + F L D+ ++ V+ +S ++
Sbjct: 113 --YYAPFDGILGLAYPSISASGATPVFD-NLWDQGLVSQDLFSVY----LSSNDDSGSVV 165
Query: 317 ANPKLDTFYY---VELVGISVGGAH---VRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370
+D+ YY + V +SV G + IT + +G I+D+GTS+ LT
Sbjct: 166 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSL--LTG 223
Query: 371 PAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYL 430
P GAS D + +C + +P +V G L + Y+
Sbjct: 224 PTSAIANIQSDIGAS---ENSDGEMVISCSSID-----SLPDIVFTIDGVQYPLSPSAYI 275
Query: 431 IPVDSSGTFCFAFAG--TMSG-LSIIGNIQQQGFRVVYDLAASRIGFAP 476
+ D S T F T SG L I+G++ + + V+D A +++G AP
Sbjct: 276 LQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 68
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 65
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 139/356 (39%), Gaps = 56/356 (15%)
Query: 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCR 194
+ +Y+T + +GTPP+ ++LDTGS +W+ C +D S S+
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTE 71
Query: 195 SPLCRKLDS-SGCNRRNTCLYQVSYGDGSITVGDFSTET----LTFRGTRVARVALGCGH 249
+ S G ++T +S GD +I DF+ T LTF + + LG G+
Sbjct: 72 FAIQYGTGSLEGYISQDT----LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGI-LGLGY 126
Query: 250 DNEGLFVXXXXXXXXXXXXXSFPTQTGRRFNRKFSYCLVDRSTSAKP-SSMVFG---DSA 305
D Q ++F++ L D S + FG +S
Sbjct: 127 DT--------ISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESK 178
Query: 306 VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSV 365
+ P+ + ++ V+ GI +G + + G ID+GTS+
Sbjct: 179 FKGDITWLPV----RRKAYWEVKFEGIGLGDEYAE-----------LESHGAAIDTGTSL 223
Query: 366 TRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLP 425
+T P+ +A GA K+ + + L T +P ++ +F G + ++
Sbjct: 224 --ITLPSGLAEMINAEIGA---KKG-----WTGQYTLDCNTRDNLPDLIFNFNGYNFTIG 273
Query: 426 ATNYLIPVDSSGTFCFA------FAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFA 475
+Y + V S C + F + L+I+G+ + + +YD+ + +G A
Sbjct: 274 PYDYTLEVSGS---CISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGNNAVGLA 326
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQT--DPVFDPAKSRSF 188
+Y+ +G+GTPP+ +V DTGS VW+ + C + Y+ +FD + S S+
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 115
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Query: 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCR 194
+ +YF +GVGTPP+ ++ DTGS +W+ P KCY ++ C
Sbjct: 51 NAQYFGEIGVGTPPQKFTVIFDTGSSNLWV---PSAKCY---------------FSIACY 92
Query: 195 SPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLT 234
K +S ++N + YG GSI G FS +++T
Sbjct: 93 LHSRYKAGASSTYKKNGKPAAIQYGTGSIA-GYFSEDSVT 131
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 42/234 (17%)
Query: 270 SFPTQ--TGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAV-----SRTARFTPLLANPKLD 322
+ P+Q + ++ KF CL + P +FG + +++ +TPL+A
Sbjct: 151 ALPSQVASAQKVPNKFLLCL----PTGGPGVAIFGGGPLPWPQFTQSMDYTPLVAK-GGS 205
Query: 323 TFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRA 382
+Y+ I V V +L GGV++ + L R Y L DAF
Sbjct: 206 PAHYISARSIKVENTRVPISERAL------ATGGVMLSTRLPYVLLRRDVYRPLVDAFTK 259
Query: 383 --------GASSLKRAPDFSLFDTCFDL----SGKTEVKVPTVVLHFRG-ADVSLPATNY 429
GA + + F+ C+D + VP V+L G +D ++ N
Sbjct: 260 ALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNS 319
Query: 430 LIPVDSSGTFCFAFAGTMSGLS---------IIGNIQQQGFRVVYDLAASRIGF 474
++ V GT C AF M G+ I+G Q + F + +D+ R+GF
Sbjct: 320 MVDV-KPGTACVAFV-EMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 40/299 (13%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWI--QCAPCKKCYSQTDPVFDPAKSRSFATVPCRS 195
Y + VG+ + + +++DTGS +W+ C+ YS D D K + P S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYS--DQTADFCKQKGTYD-PSGS 70
Query: 196 PLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALG---CGHDNE 252
+ L++ +++ YGDGS + G +T+ F G + L ++
Sbjct: 71 SASQDLNTP---------FKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ 121
Query: 253 GLFVXXXXXXXXXXXXXSFPTQTGRR-FNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTAR 311
G+ + P ++ K +Y L S A ++FG V
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFG--GVDNAKY 179
Query: 312 FTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371
L+A P + IS+G V G T + +D V++DSGT++T L +
Sbjct: 180 SGSLIALPVTSD----RELRISLGSVEVSGKTINTDNVD------VLLDSGTTITYLQQD 229
Query: 372 AYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHF-RGADVSLPATNY 429
+ AF + F D C +LSG VV +F + A +S+PA+ +
Sbjct: 230 LADQIIKAFNGKLTQDSNGNSFYEVD-C-NLSGD-------VVFNFSKNAKISVPASEF 279
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 421 DVSLPATNYLIPVDSSGTFCFAFAGTMSGLS-IIGNIQQQGFRVVYDLAASRIGFAP 476
DVS+P + L+PVD SG C G I+GN+ + F VYD +RIGFAP
Sbjct: 297 DVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPV----FDPAKSRSF 188
EY + +GTP + Y++ DTGS W+ P K C + V FDP+ S +F
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWV---PHKGCDNSEGCVGKRFFDPSSSSTF 71
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATV 191
+YF ++ +GTPP+ ++ DTGS W+ CK + FDP KS +F +
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATV 191
+YF ++ +GTPP+ ++ DTGS W+ CK + FDP KS +F +
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 40/299 (13%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCA--PCKKCYSQTDPVFDPAKSRSFATVPCRS 195
Y + VG+ + + +++DTGS +W+ C+ YS D D K + P S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYS--DQTADFCKQKGTYD-PSGS 70
Query: 196 PLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALG---CGHDNE 252
+ L++ + + YGDGS + G +T+ F G + L ++
Sbjct: 71 SASQDLNTP---------FSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ 121
Query: 253 GLFVXXXXXXXXXXXXXSFPTQTGRR-FNRKFSYCLVDRSTSAKPSSMVFGDSAVSRTAR 311
G+ + P ++ K +Y L S + ++FG V
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATGQIIFG--GVDNAKY 179
Query: 312 FTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371
L+A P + IS+G V G T + +D V++DSGT++T L +
Sbjct: 180 SGSLIALPVTSD----RELRISLGSVEVSGKTINTDNVD------VLLDSGTTITYLQQD 229
Query: 372 AYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHF-RGADVSLPATNY 429
+ AF + F D C +LSG VV +F + A +S+PA+++
Sbjct: 230 LADQIIKAFNGKLTQDSNGNSFYEVD-C-NLSGD-------VVFNFSKNAKISVPASDF 279
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 140/353 (39%), Gaps = 60/353 (16%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWI--QCAPCKKCYS-------QTDPVFDPAKSRSF 188
Y + VG+ + +V+DTGS +W+ A C+ YS + + FDP+ S S
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSS- 72
Query: 189 ATVPCRSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALG-- 246
+ L+ + + YGD + + G F +T+ F G +
Sbjct: 73 ---------AQNLNQD---------FSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADV 114
Query: 247 --CGHDNEGLFVXXXXXXXXXXXXXSFPTQTGRR-FNRKFSYCLVDRSTSAKPSSMVFGD 303
D + + + P ++ K +Y L S A ++FG
Sbjct: 115 TTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFG- 173
Query: 304 SAVSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGT 363
V L A P + VEL + +G + G + S N V++DSGT
Sbjct: 174 -GVDNAKYTGTLTALPVTSS---VEL-RVHLGSINFDGTSVST-------NADVVLDSGT 221
Query: 364 SVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHF-RGADV 422
++T ++ A + A GA+ R + L +C DLSG V +F +G +
Sbjct: 222 TITYFSQST--ADKFARIVGATWDSRNEIYRL-PSC-DLSGD-------AVFNFDQGVKI 270
Query: 423 SLPATNYLIPVDSSGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFA 475
++P + LI DS + C+ F + + +I+G+ + +VYDL I A
Sbjct: 271 TVPLSE-LILKDSDSSICY-FGISRNDANILGDNFLRRAYIVYDLDDKTISLA 321
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EY+ ++ +GTP + + DTGS +WI C C S+ +DP +S ++
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSSTY-------- 66
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRV 240
+ + + +SYGDGS G + + + G +
Sbjct: 67 -----------QADGRTWSISYGDGSSASGILAKDNVNLGGLLI 99
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYS-QTDPVFDPAKSRSFATVPCRS 195
EY+ ++ +GTP + + DTGS +WI C C S QT +DP +S ++
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK--YDPNQSSTY------- 66
Query: 196 PLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRV 240
+ + + +SYGDGS G + + + G +
Sbjct: 67 ------------QADGRTWSISYGDGSSASGILAKDNVNLGGLLI 99
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 42/235 (17%)
Query: 270 SFPTQ--TGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAV-----SRTARFTPLLANPKLD 322
+ P Q + ++ +F CL + P +FG V +++ +TPL+
Sbjct: 149 ALPAQVASAQKVANRFLLCL----PTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTK-GGS 203
Query: 323 TFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAF-- 380
+Y+ I VG V +L GGV++ + L Y L DAF
Sbjct: 204 PAHYISARSIVVGDTRVPVPEGAL------ATGGVMLSTRLPYVLLRPDVYRPLMDAFTK 257
Query: 381 -----RAGASSLKRAPD-FSLFDTCFDL----SGKTEVKVPTVVLHFRG-ADVSLPATNY 429
A + + RA + + F C+D + VP V L G +D ++ N
Sbjct: 258 ALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNS 317
Query: 430 LIPVDSSGTFCFAFAGTMSGLS---------IIGNIQQQGFRVVYDLAASRIGFA 475
++ V GT C AF M G++ I+G Q + F + +D+ R+GF+
Sbjct: 318 MVDV-KQGTACVAFV-EMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 136 GEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRS 195
+Y+ +G+GTPP+ +V DTGS +W+ CK + C
Sbjct: 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK-----------------LLDIACWI 55
Query: 196 PLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLT 234
D S +N + + YG GS++ G S +T++
Sbjct: 56 HHKYNSDKSSTYVKNGTSFDIHYGSGSLS-GYLSQDTVS 93
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCY 173
+Y+ +G+GTPP+ ++ DTGS +W+ C + Y
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLY 52
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 42/235 (17%)
Query: 270 SFPTQ--TGRRFNRKFSYCLVDRSTSAKPSSMVFGDSAV-----SRTARFTPLLANPKLD 322
+ P Q + ++ +F CL + P +FG V +++ +TPL+
Sbjct: 149 ALPAQVASAQKVANRFLLCL----PTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTK-GGS 203
Query: 323 TFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRA 382
+Y+ I VG V +L GGV++ + L Y L DAF
Sbjct: 204 PAHYISARSIVVGDTRVPVPEGAL------ATGGVMLSTRLPYVLLRPDVYRPLMDAFTK 257
Query: 383 --------GASSLKRAPDFSLFDTCFDL----SGKTEVKVPTVVLHFRG-ADVSLPATNY 429
GA + + F C+D + VP V L G +D ++ N
Sbjct: 258 ALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNS 317
Query: 430 LIPVDSSGTFCFAFAGTMSGLS---------IIGNIQQQGFRVVYDLAASRIGFA 475
++ V GT C AF M G++ I+G Q + F + +D+ R+GF+
Sbjct: 318 MVDV-KQGTACVAFV-EMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDP 182
EY T + +GTP + + + DTGS +W+ + K + ++ P
Sbjct: 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTP 61
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 430 LIPVDSSGTFCFAFAGTMSGL--SIIGNIQQQGFRVVYDLAASRIGFAPR 477
L P++ + CF + SG+ +I G++ + VV+DL R+G+A +
Sbjct: 280 LTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSF 188
Y+ +G + + DTGS +W+ A C +T ++D KS+++
Sbjct: 23 YYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTY 73
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYS---QTDPVFDPAKSRSFA 189
G GE VG + ++ DTGS +W+ P KKC S T ++D +KS+S+
Sbjct: 18 GEGE------VGDNHQKFMLIFDTGSANLWV---PSKKCNSIGCSTKHLYDSSKSKSYE 67
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 153 MVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFA 189
+LDTGS +W+ C T ++D +KSR++
Sbjct: 82 FILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYE 118
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 28/112 (25%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQ-----CAPC----KKCYSQTDPVFDPAKSRSF 188
Y + VG+ + + +++DTGS +WI C P K + ++ + PA SR+
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 189 ATVPCRSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRV 240
+ R + + YGDGS G +T+ G V
Sbjct: 74 QNLNTR-------------------FDIKYGDGSYAKGKLYKDTVGIGGVSV 106
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRS 187
Y T + +GTP + + + DTGS +W+ + ++ P+KS +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTT 66
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRS 187
Y T + +GTP + + + DTGS +W+ + ++ P+KS +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTT 66
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 154 VLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFA 189
+LDTGS +W+ C T ++D +KSR++
Sbjct: 156 ILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYE 191
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 153 MVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFA 189
+LDTGS +W+ C T ++D +KSR++
Sbjct: 33 FILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYE 69
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 153 MVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFA 189
+LDTGS +W+ C T ++D +KSR++
Sbjct: 33 FILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYE 69
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 153 MVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFA 189
+LDTGS +W+ C T ++D +KSR++
Sbjct: 31 FILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYE 67
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 153 MVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFA 189
+LDTGS +W+ C T ++D +KSR++
Sbjct: 31 FILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYE 67
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYS---QTDPVFDPAKSRSFA 189
G GE VG + ++ DTGS +W+ P KKC S ++D +KS+S+
Sbjct: 66 GEGE------VGDNHQKFMLIFDTGSANLWV---PSKKCNSSGCSIKNLYDSSKSKSYE 115
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYS---QTDPVFDPAKSRSFA 189
G GE VG + ++ DTGS +W+ P KKC S ++D +KS+S+
Sbjct: 20 GEGE------VGDNHQKFMLIFDTGSANLWV---PSKKCNSSGCSIKNLYDSSKSKSYE 69
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSP 196
EY T++ VG + + DTGS +W+ SQT P+ RS
Sbjct: 16 EYITQVTVGDDT--LGLDFDTGSADLWVFS-------SQT-----PSSERSGHDYYTPGS 61
Query: 197 LCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVAL 245
+K+D + +SYGDGS GD + +T G A+
Sbjct: 62 SAQKIDG--------ATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAV 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,516,128
Number of Sequences: 62578
Number of extensions: 486712
Number of successful extensions: 1131
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 183
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)