Query 040810
Match_columns 480
No_of_seqs 315 out of 1750
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.1E-75 4.5E-80 608.8 42.8 392 63-480 23-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.3E-59 2.9E-64 486.9 38.6 337 133-480 42-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 5.8E-58 1.3E-62 457.7 33.6 294 137-479 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 6.2E-57 1.3E-61 460.2 33.2 315 144-477 2-361 (362)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.5E-55 3.4E-60 443.8 34.2 293 135-476 8-317 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 4.7E-55 1E-59 441.8 34.6 298 135-476 4-325 (325)
7 PTZ00165 aspartyl protease; Pr 100.0 2.5E-54 5.4E-59 453.2 39.8 307 123-480 109-449 (482)
8 cd05477 gastricsin Gastricsins 100.0 1.4E-54 3E-59 437.0 35.7 296 135-477 1-318 (318)
9 cd05486 Cathespin_E Cathepsin 100.0 7.5E-55 1.6E-59 438.6 32.3 294 138-476 1-316 (316)
10 cd06096 Plasmepsin_5 Plasmepsi 100.0 6.9E-55 1.5E-59 440.7 32.1 293 136-480 2-326 (326)
11 cd05485 Cathepsin_D_like Cathe 100.0 1.3E-53 2.9E-58 431.7 34.0 298 134-476 8-329 (329)
12 cd05488 Proteinase_A_fungi Fun 100.0 2.1E-53 4.5E-58 428.8 33.6 292 135-476 8-320 (320)
13 cd06098 phytepsin Phytepsin, a 100.0 9.9E-53 2.1E-57 423.3 34.4 286 134-476 7-317 (317)
14 cd05487 renin_like Renin stimu 100.0 1.1E-52 2.5E-57 424.5 34.5 298 134-477 5-326 (326)
15 PTZ00147 plasmepsin-1; Provisi 100.0 2.3E-51 4.9E-56 427.7 39.1 303 122-478 127-450 (453)
16 cd05475 nucellin_like Nucellin 100.0 9.2E-52 2E-56 407.7 29.8 253 136-479 1-273 (273)
17 cd05473 beta_secretase_like Be 100.0 2.8E-51 6.1E-56 420.4 32.4 311 136-480 2-348 (364)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.7E-50 8.1E-55 417.8 39.1 302 123-478 127-449 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 7.7E-51 1.7E-55 399.5 29.7 258 137-479 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 4.2E-49 9.1E-54 389.8 29.1 262 138-476 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.4E-47 3E-52 381.7 30.8 271 137-477 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-47 3.1E-52 384.7 24.0 294 137-477 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-45 2.6E-50 364.4 31.3 267 138-476 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7.9E-33 1.7E-37 252.0 16.5 156 138-303 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 1.2E-28 2.7E-33 223.9 15.6 150 324-476 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 3.2E-24 6.9E-29 181.8 13.1 105 140-264 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 8.5E-06 1.8E-10 66.5 8.0 94 136-266 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.0046 1E-07 53.2 9.4 94 135-265 9-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.7 0.017 3.7E-07 46.1 9.8 89 140-265 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.7 0.14 3E-06 44.2 7.4 94 357-474 30-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 94.6 0.41 8.9E-06 41.2 10.3 91 135-265 14-106 (124)
32 PF11925 DUF3443: Protein of u 93.3 2.1 4.6E-05 43.4 13.8 105 138-268 24-150 (370)
33 cd05484 retropepsin_like_LTR_2 91.3 0.23 5E-06 40.1 3.5 29 138-168 1-29 (91)
34 COG3577 Predicted aspartyl pro 90.5 1 2.2E-05 42.0 7.2 101 134-276 102-202 (215)
35 cd06095 RP_RTVL_H_like Retrope 90.5 2.7 5.8E-05 33.5 9.0 26 141-168 2-27 (86)
36 PF08284 RVP_2: Retroviral asp 88.0 1.4 3E-05 38.6 6.1 29 449-477 104-132 (135)
37 TIGR03698 clan_AA_DTGF clan AA 86.8 2.9 6.3E-05 35.0 7.1 24 449-472 84-107 (107)
38 PF13975 gag-asp_proteas: gag- 85.3 1.5 3.2E-05 33.9 4.2 35 135-171 6-40 (72)
39 TIGR02281 clan_AA_DTGA clan AA 85.0 2 4.4E-05 36.8 5.4 36 322-376 9-44 (121)
40 PF12384 Peptidase_A2B: Ty3 tr 83.8 11 0.00023 34.1 9.3 21 357-377 48-68 (177)
41 PF00077 RVP: Retroviral aspar 83.3 1.7 3.6E-05 35.5 4.0 28 139-168 7-34 (100)
42 PF13650 Asp_protease_2: Aspar 80.4 2.3 5.1E-05 33.4 3.8 20 357-376 12-31 (90)
43 cd05484 retropepsin_like_LTR_2 79.2 3.3 7.2E-05 33.2 4.4 30 331-376 4-33 (91)
44 cd05482 HIV_retropepsin_like R 72.2 4.9 0.00011 32.4 3.5 25 141-167 2-26 (87)
45 PF13975 gag-asp_proteas: gag- 71.9 6 0.00013 30.4 3.9 29 332-376 13-41 (72)
46 cd05483 retropepsin_like_bacte 71.6 6.9 0.00015 31.0 4.4 29 332-376 7-35 (96)
47 cd06095 RP_RTVL_H_like Retrope 61.9 11 0.00023 30.0 3.6 29 332-376 3-31 (86)
48 PF00077 RVP: Retroviral aspar 53.7 11 0.00023 30.6 2.4 26 331-372 9-34 (100)
49 PF09668 Asp_protease: Asparty 46.4 25 0.00053 30.4 3.5 29 332-376 29-57 (124)
50 cd05481 retropepsin_like_LTR_1 46.0 23 0.00049 28.7 3.1 21 357-377 13-33 (93)
51 COG3577 Predicted aspartyl pro 42.4 51 0.0011 30.9 5.1 36 322-376 103-138 (215)
52 KOG0012 DNA damage inducible p 35.1 3.4E+02 0.0074 27.8 9.9 39 439-477 307-346 (380)
53 PF12384 Peptidase_A2B: Ty3 tr 31.3 63 0.0014 29.3 3.7 28 139-166 34-61 (177)
54 cd05470 pepsin_retropepsin_lik 31.2 44 0.00095 27.2 2.7 17 356-372 13-29 (109)
55 COG5550 Predicted aspartyl pro 29.5 39 0.00084 29.0 2.0 20 357-376 29-49 (125)
56 PF09668 Asp_protease: Asparty 27.8 99 0.0022 26.6 4.3 35 136-172 23-57 (124)
57 PF07172 GRP: Glycine rich pro 22.2 64 0.0014 26.4 2.0 9 1-9 1-9 (95)
58 TIGR03698 clan_AA_DTGF clan AA 21.4 1.1E+02 0.0024 25.3 3.4 67 140-240 2-73 (107)
59 cd06098 phytepsin Phytepsin, a 21.2 1.2E+02 0.0026 30.2 4.2 16 356-371 25-40 (317)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.1e-75 Score=608.79 Aligned_cols=392 Identities=37% Similarity=0.689 Sum_probs=330.5
Q ss_pred CceEEEEEccCCCCC-----CCCchhHHHHHHHHhHHHHHHHHHHHhccccCCCCCCCCCCCCCCceecccccccCCcee
Q 040810 63 SSLSLRLHHVDSLSF-----NRTPEHLFNLRIQRDVLRVKSLTAFAESAVRVPPRNRSRGRANGGFSSSVISGLAQGSGE 137 (480)
Q Consensus 63 ~~~~~~l~h~~~~~~-----~~~~~~~~~~~~~~d~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 137 (480)
..++++|+||+++++ +.++.++++++++||.+|++++.++.. ...|+.++...++++
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~------------------~~~~~~~~~~~~~~~ 84 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA------------------SPNDPQSDLISNGGE 84 (431)
T ss_pred CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc------------------cCCccccCcccCCcc
Confidence 458999999998754 335578899999999999998865411 012444444556899
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCC-CCCCCCCceeee
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSS-GCNRRNTCLYQV 216 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~-~C~~~~~~~y~~ 216 (480)
|+++|.||||||++.|++||||+++||+|.+|..|+.|.++.|||++|+||+.++|.++.|+.+... .|..++.|.|.+
T Consensus 85 Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i 164 (431)
T PLN03146 85 YLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSY 164 (431)
T ss_pred EEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 477666799999
Q ss_pred eeCCCceeEEEEEEEEEEECC-----eeeeeEEEEEEecCCCCc-cCCceEeecCCCCCChHHHhhhcCCCcEEEEeccC
Q 040810 217 SYGDGSITVGDFSTETLTFRG-----TRVARVALGCGHDNEGLF-VAAAGLLGLGRGRLSFPTQTGRRFNRKFSYCLVDR 290 (480)
Q Consensus 217 ~Ygdgs~~~G~~~~Dtvt~g~-----~~v~~~~fG~~~~~~~~~-~~~~GIlGLG~~~~Sl~~ql~~~~~~~FS~~L~~~ 290 (480)
.|+||+.+.|.+++|+|+|++ ..++++.|||++++.+.| ...+||||||++++|+++|+.....++|||||.+.
T Consensus 165 ~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~ 244 (431)
T PLN03146 165 SYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPL 244 (431)
T ss_pred EeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCC
Confidence 999999888999999999986 468999999999988777 35899999999999999999876667999999864
Q ss_pred CCC-CCCcEEEeccCC-CC-CCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCccee
Q 040810 291 STS-AKPSSMVFGDSA-VS-RTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTR 367 (480)
Q Consensus 291 ~~~-~~~g~L~fG~~d-~~-g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~ 367 (480)
.+. ...|.|+||+.. +. +.+.||||+.+. .+.+|+|.|++|+||+++++ ++...|. ..+.+++||||||++++
T Consensus 245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~-~~~~~~~--~~~~g~~iiDSGTt~t~ 320 (431)
T PLN03146 245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLP-YTGSSKN--GVEEGNIIIDSGTTLTL 320 (431)
T ss_pred CCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECc-CCccccc--cCCCCcEEEeCCcccee
Confidence 322 227999999965 33 358999998642 25799999999999999998 8877765 34567899999999999
Q ss_pred eCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcEEEEEEecC
Q 040810 368 LTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTFCFAFAGTM 447 (480)
Q Consensus 368 Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~Cl~~~~~~ 447 (480)
||+++|++|+++|.+++...+.......++.||+... ...+|+|+|||+|+++.|++++|+++... +..|+++.+.
T Consensus 321 Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~-~~~Cl~~~~~- 396 (431)
T PLN03146 321 LPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHFTGADVKLQPLNTFVKVSE-DLVCFAMIPT- 396 (431)
T ss_pred cCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEECCCeeecCcceeEEEcCC-CcEEEEEecC-
Confidence 9999999999999988754333333334678998532 25799999999999999999999998763 6789999876
Q ss_pred CCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 448 SGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 448 ~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
.+.+|||+.|||++||+||++++|||||+.+|+
T Consensus 397 ~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 397 SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 346999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-59 Score=486.88 Aligned_cols=337 Identities=47% Similarity=0.879 Sum_probs=285.3
Q ss_pred CCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC-CCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCC
Q 040810 133 QGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK-KCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNT 211 (480)
Q Consensus 133 ~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~-~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~ 211 (480)
..+++|+++|.||||||+|.|++||||+++||+|.+|. .|+.+.++.|||++|+||+.++|.++.|...... |..++.
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~~~~~~ 120 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-CSPNSS 120 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-cccCCc
Confidence 34689999999999999999999999999999999999 8987777779999999999999999999998766 666668
Q ss_pred ceeeeeeCCCceeEEEEEEEEEEECC---eeeeeEEEEEEecCCCCc---cCCceEeecCCCCCChHHHhhhcC--CCcE
Q 040810 212 CLYQVSYGDGSITVGDFSTETLTFRG---TRVARVALGCGHDNEGLF---VAAAGLLGLGRGRLSFPTQTGRRF--NRKF 283 (480)
Q Consensus 212 ~~y~~~Ygdgs~~~G~~~~Dtvt~g~---~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~Sl~~ql~~~~--~~~F 283 (480)
|.|.+.||||+.+.|.+++|+|+|++ ..++++.|||++.+.+.+ ...+||||||++.+|+++|+.... .++|
T Consensus 121 C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~F 200 (398)
T KOG1339|consen 121 CPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVF 200 (398)
T ss_pred CceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeE
Confidence 99999999988778999999999997 788889999999987532 357999999999999999998763 3469
Q ss_pred EEEeccCCCCC-CCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEE
Q 040810 284 SYCLVDRSTSA-KPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVII 359 (480)
Q Consensus 284 S~~L~~~~~~~-~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ii 359 (480)
||||.+..... ..|.|+||+.| ..+.+.|+||+.++. .||+|.|++|+||++. . +++..+..+ .+++|+
T Consensus 201 S~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~-~~~~~~~~~---~~~~ii 273 (398)
T KOG1339|consen 201 SYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-P-IGSSLFCTD---GGGAII 273 (398)
T ss_pred EEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-C-CCcceEecC---CCCEEE
Confidence 99999875432 37999999999 457899999998653 6999999999999987 6 776666432 578999
Q ss_pred cccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEc-CeEEEECCCCcEEEecCCCc
Q 040810 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFR-GADVSLPATNYLIPVDSSGT 438 (480)
Q Consensus 360 DSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~-G~~~~l~~~~yl~~~~~~g~ 438 (480)
||||++++||+++|++|.++|.+.+. .. ......+..||...... ..+|+|+|+|+ |+++.|++++|++++.....
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~-~~-~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~ 350 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVS-VV-GTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGG 350 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhhee-cc-ccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCC
Confidence 99999999999999999999998640 00 11122345798865443 56999999999 89999999999998875222
Q ss_pred EEEEEEecC-C-CceeecHhhhcceEEEEECC-CCEEEEee--CCCC
Q 040810 439 FCFAFAGTM-S-GLSIIGNIQQQGFRVVYDLA-ASRIGFAP--RGCA 480 (480)
Q Consensus 439 ~Cl~~~~~~-~-~~~IlG~~fl~~~yvvfD~~-~~rIGFa~--~~C~ 480 (480)
.|+++.... . ..||||++|||+++++||.. ++|||||+ ..|.
T Consensus 351 ~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 351 VCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred ceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 399776553 2 47999999999999999999 99999999 8884
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.8e-58 Score=457.69 Aligned_cols=294 Identities=61% Similarity=1.050 Sum_probs=254.1
Q ss_pred eEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceeee
Q 040810 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQV 216 (480)
Q Consensus 137 ~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~ 216 (480)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------------------------Ceeee
Confidence 699999999999999999999999999988765 46889
Q ss_pred eeCCCceeEEEEEEEEEEECCe-eeeeEEEEEEecCCCCccCCceEeecCCCCCChHHHhhhcCCCcEEEEeccCCCCCC
Q 040810 217 SYGDGSITVGDFSTETLTFRGT-RVARVALGCGHDNEGLFVAAAGLLGLGRGRLSFPTQTGRRFNRKFSYCLVDRSTSAK 295 (480)
Q Consensus 217 ~Ygdgs~~~G~~~~Dtvt~g~~-~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~Sl~~ql~~~~~~~FS~~L~~~~~~~~ 295 (480)
.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+...+||||||+..+|++.|+..+..++||+||.+.... .
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~-~ 117 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSS-S 117 (299)
T ss_pred EeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCC-C
Confidence 9999998789999999999988 8999999999988776667899999999999999999877789999999875412 2
Q ss_pred CcEEEeccCCC-CCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHH
Q 040810 296 PSSMVFGDSAV-SRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYI 374 (480)
Q Consensus 296 ~g~L~fG~~d~-~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~ 374 (480)
.|+|+||++|. .+++.|+|++.++..+.+|.|+|++|+||++.+. +++.. ..++++||||||++++||+++|+
T Consensus 118 ~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~-~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 118 SGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLP-IPPAS-----FGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECC-CCccc-----cCCCCeEEeCCCcceecCHHHHH
Confidence 79999999994 5899999999876556799999999999999887 54321 23568999999999999999999
Q ss_pred HHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEc-CeEEEECCCCcEEEecCCCcEEEEEEec--CCCce
Q 040810 375 ALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFR-GADVSLPATNYLIPVDSSGTFCFAFAGT--MSGLS 451 (480)
Q Consensus 375 ~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~-G~~~~l~~~~yl~~~~~~g~~Cl~~~~~--~~~~~ 451 (480)
+|.+++.+.....+...+...++.||..++.....+|+|+|+|+ |++++|++++|+++....+..|++|.+. ..+.+
T Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCE
Confidence 99999998764443334444566799988776678999999998 9999999999999544456789988875 24579
Q ss_pred eecHhhhcceEEEEECCCCEEEEeeCCC
Q 040810 452 IIGNIQQQGFRVVYDLAASRIGFAPRGC 479 (480)
Q Consensus 452 IlG~~fl~~~yvvfD~~~~rIGFa~~~C 479 (480)
|||+.|||++|+|||++++|||||+.+|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.2e-57 Score=460.18 Aligned_cols=315 Identities=30% Similarity=0.536 Sum_probs=261.9
Q ss_pred ecCCCcE-EEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCC------------CCCCCC
Q 040810 144 VGTPPRY-VYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSS------------GCNRRN 210 (480)
Q Consensus 144 iGTP~q~-~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~------------~C~~~~ 210 (480)
+|||-.+ +.|++||||+++||||.+| +|+||+.++|+++.|+.+... .|.++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~--------------~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~- 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG--------------HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNN- 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC--------------CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCC-
Confidence 5888777 9999999999999999863 588999999999999876432 45433
Q ss_pred Cceeeee-eCCCceeEEEEEEEEEEECC--------eeeeeEEEEEEecCC--CCccCCceEeecCCCCCChHHHhhhc-
Q 040810 211 TCLYQVS-YGDGSITVGDFSTETLTFRG--------TRVARVALGCGHDNE--GLFVAAAGLLGLGRGRLSFPTQTGRR- 278 (480)
Q Consensus 211 ~~~y~~~-Ygdgs~~~G~~~~Dtvt~g~--------~~v~~~~fG~~~~~~--~~~~~~~GIlGLG~~~~Sl~~ql~~~- 278 (480)
.|.|... |++|+.+.|.+++|+|+|+. ..++++.|||++++. +.+..++||||||++++|+++|+..+
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 5988765 88998888999999999963 378999999999864 33456899999999999999999875
Q ss_pred -CCCcEEEEeccCCCCCCCcEEEeccCCC---------CCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccc
Q 040810 279 -FNRKFSYCLVDRSTSAKPSSMVFGDSAV---------SRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFK 348 (480)
Q Consensus 279 -~~~~FS~~L~~~~~~~~~g~L~fG~~d~---------~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~ 348 (480)
..++|||||.+..+. .|.|+||+.+. .+.+.||||+.++..+.||+|+|++|+||++++. +++..+.
T Consensus 147 ~~~~~FS~CL~~~~~~--~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~-~~~~~~~ 223 (362)
T cd05489 147 GVARKFALCLPSSPGG--PGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVP-LNPTLSA 223 (362)
T ss_pred CCCcceEEEeCCCCCC--CeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECC-CCchhcc
Confidence 358999999875332 79999999872 3789999999876556899999999999999998 8877776
Q ss_pred cCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCC-CCccccccccCC----CcccccceEEEEEcC--eE
Q 040810 349 LDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPD-FSLFDTCFDLSG----KTEVKVPTVVLHFRG--AD 421 (480)
Q Consensus 349 ~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~-~~~~~~Cy~~~~----~~~~~~P~lt~~F~G--~~ 421 (480)
.+..+.+++||||||++|+||+++|++|+++|.+++...+.... ...++.||.... .....+|+|+|||+| ++
T Consensus 224 ~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~ 303 (362)
T cd05489 224 NDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVN 303 (362)
T ss_pred ccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeE
Confidence 66667789999999999999999999999999987654433222 122478998542 224689999999986 99
Q ss_pred EEECCCCcEEEecCCCcEEEEEEecC---CCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 422 VSLPATNYLIPVDSSGTFCFAFAGTM---SGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 422 ~~l~~~~yl~~~~~~g~~Cl~~~~~~---~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
++|++++|++++. .+.+|++|.+.+ ...||||+.|||++|++||++++|||||+.
T Consensus 304 ~~l~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 304 WTIFGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999876 367899998763 347999999999999999999999999974
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.5e-55 Score=443.77 Aligned_cols=293 Identities=22% Similarity=0.436 Sum_probs=252.9
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+.+|+++|+||||+|++.|+|||||+++||+|..|..|.|+.++.|||++|+||+.. .+.|
T Consensus 8 ~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~-------------------~~~~ 68 (317)
T cd05478 8 DMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQST-------------------GQPL 68 (317)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeC-------------------CcEE
Confidence 689999999999999999999999999999999999877778899999999999886 5899
Q ss_pred eeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeecCCCCC------ChHHHhhhc---CCCc
Q 040810 215 QVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGLGRGRL------SFPTQTGRR---FNRK 282 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~------Sl~~ql~~~---~~~~ 282 (480)
.+.|++|+. .|.+++|+|+|++..++++.|||++...+.+ ...+||||||++.+ +++.||+++ ..+.
T Consensus 69 ~~~yg~gs~-~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~ 147 (317)
T cd05478 69 SIQYGTGSM-TGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDL 147 (317)
T ss_pred EEEECCceE-EEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCE
Confidence 999999996 5999999999999999999999998776654 35799999998765 477888876 4689
Q ss_pred EEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEE
Q 040810 283 FSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVII 359 (480)
Q Consensus 283 FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ii 359 (480)
||+||.+.... .|+|+||++| +.|++.|+|+.. +.+|.|.|++|+||++.+. .. .+..+||
T Consensus 148 FS~~L~~~~~~--~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~-~~---------~~~~~ii 211 (317)
T cd05478 148 FSVYLSSNGQQ--GSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVA-CS---------GGCQAIV 211 (317)
T ss_pred EEEEeCCCCCC--CeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEc-cC---------CCCEEEE
Confidence 99999875433 6999999998 678999999975 5799999999999999875 32 2457999
Q ss_pred cccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcE
Q 040810 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTF 439 (480)
Q Consensus 360 DSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~ 439 (480)
||||++++||+++|++|.+++.+... . ..+|.++|.....+|.|+|+|+|++++||+++|+++. +..
T Consensus 212 DTGts~~~lp~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~---~~~ 278 (317)
T cd05478 212 DTGTSLLVGPSSDIANIQSDIGASQN----Q------NGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD---QGS 278 (317)
T ss_pred CCCchhhhCCHHHHHHHHHHhCCccc----c------CCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC---CCE
Confidence 99999999999999999998865321 1 1246667776678999999999999999999999864 468
Q ss_pred EE-EEEecC-CCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 440 CF-AFAGTM-SGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 440 Cl-~~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
|+ +|.+.+ .+.||||++|||++|+|||++++||||||
T Consensus 279 C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 279 CTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 98 677653 36799999999999999999999999996
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.7e-55 Score=441.77 Aligned_cols=298 Identities=22% Similarity=0.436 Sum_probs=246.7
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCC--CCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCc
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKC--YSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTC 212 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 212 (480)
+.+|+++|.||||||++.|++||||+++||+|..|..| .|..++.|||++|+||+.. +|
T Consensus 4 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~-------------------~~ 64 (325)
T cd05490 4 DAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKN-------------------GT 64 (325)
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeC-------------------Cc
Confidence 68999999999999999999999999999999999732 2345689999999999864 58
Q ss_pred eeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHhhhc---CC
Q 040810 213 LYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQTGRR---FN 280 (480)
Q Consensus 213 ~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql~~~---~~ 280 (480)
.|.+.|++|+. .|.+++|+|+|++..++++.|||+++..+. | ...+||||||++.++ ++.+|.++ ..
T Consensus 65 ~~~i~Yg~G~~-~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~ 143 (325)
T cd05490 65 EFAIQYGSGSL-SGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQ 143 (325)
T ss_pred EEEEEECCcEE-EEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence 99999999986 599999999999999999999999887652 3 457999999998765 45577664 47
Q ss_pred CcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 281 RKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 281 ~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
++||+||.+.......|+|+||++| +.|++.|+|+.. ..+|.|+|++|+||++... . .....+
T Consensus 144 ~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~-~---------~~~~~a 209 (325)
T cd05490 144 NVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTL-C---------KGGCEA 209 (325)
T ss_pred CEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeee-c---------CCCCEE
Confidence 8999999864322226999999999 678999999875 5799999999999987432 1 124579
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-C
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS-S 436 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~-~ 436 (480)
||||||+++++|++++++|.+++.+. +...+ +|.++|.....+|+|+|+|+|++++|+|++|+++... .
T Consensus 210 iiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~------~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~ 279 (325)
T cd05490 210 IVDTGTSLITGPVEEVRALQKAIGAV----PLIQG------EYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRG 279 (325)
T ss_pred EECCCCccccCCHHHHHHHHHHhCCc----cccCC------CEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCC
Confidence 99999999999999999999988542 11222 3556666667899999999999999999999997653 2
Q ss_pred CcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 437 GTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 437 g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
...|+ +|... ....||||++|||++|+|||++++|||||+
T Consensus 280 ~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 280 TTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 35898 67653 235799999999999999999999999996
No 7
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.5e-54 Score=453.17 Aligned_cols=307 Identities=20% Similarity=0.409 Sum_probs=253.3
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLD 202 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 202 (480)
...|+.+ +.+.+|+++|+||||||+|.|++||||+++||+|..|..|.|+.++.|||++|+||+.+.+..
T Consensus 109 ~~~~l~n---~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------- 178 (482)
T PTZ00165 109 LQQDLLN---FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------- 178 (482)
T ss_pred cceeccc---ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-------
Confidence 4556654 357999999999999999999999999999999999997767788999999999999853211
Q ss_pred CCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCC-Cc--cCCceEeecCCCCC---------C
Q 040810 203 SSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEG-LF--VAAAGLLGLGRGRL---------S 270 (480)
Q Consensus 203 ~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~-~~--~~~~GIlGLG~~~~---------S 270 (480)
....+.+.||+|+.. |.+++|+|+||+..++++.|||++...+ .| ..+|||||||++.+ +
T Consensus 179 -------~~~~~~i~YGsGs~~-G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p 250 (482)
T PTZ00165 179 -------ESAETYIQYGTGECV-LALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALP 250 (482)
T ss_pred -------ccceEEEEeCCCcEE-EEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCC
Confidence 012567999999987 9999999999999999999999998754 34 46899999999875 3
Q ss_pred hHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---C--CCCeEEEecccCCCCCeeEEEEEeeEEECCeeecce
Q 040810 271 FPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---V--SRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGI 342 (480)
Q Consensus 271 l~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~--~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i 342 (480)
+..+|.++ ..++||+||.+.... .|+|+||++| + .+++.|+|+.. ..||.|.+++|+||++.+. +
T Consensus 251 ~~~~l~~qgli~~~~FS~yL~~~~~~--~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~-~ 323 (482)
T PTZ00165 251 IVDNIKKQNLLKRNIFSFYMSKDLNQ--PGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLG-F 323 (482)
T ss_pred HHHHHHHcCCcccceEEEEeccCCCC--CCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEee-e
Confidence 56677765 578999999764333 7999999998 3 46899999986 5799999999999998776 4
Q ss_pred eccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCe--
Q 040810 343 TASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGA-- 420 (480)
Q Consensus 343 ~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~-- 420 (480)
.. ....+|+||||+++++|++++++|.+++... ..|.. ...+|+|+|+|+|.
T Consensus 324 ~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~-----~~~lP~itf~f~g~~g 377 (482)
T PTZ00165 324 CD--------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSN-----KDSLPRISFVLEDVNG 377 (482)
T ss_pred cC--------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccc-----cccCCceEEEECCCCC
Confidence 21 2357999999999999999999999887532 13654 35799999999864
Q ss_pred ---EEEECCCCcEEEe---cCCCcEEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 421 ---DVSLPATNYLIPV---DSSGTFCF-AFAGTM-----SGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 421 ---~~~l~~~~yl~~~---~~~g~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
++.|+|++|+++. ...+..|+ +|.+.+ ++.||||++|||++|+|||.+++|||||+++|.
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 8999999999974 22456896 888642 357999999999999999999999999999984
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-54 Score=437.00 Aligned_cols=296 Identities=23% Similarity=0.467 Sum_probs=251.7
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+..|+++|.||||||++.|+|||||+++||+|..|..+.|..++.|||++|+||+.. .|.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~-------------------~~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTN-------------------GETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceEC-------------------CcEE
Confidence 468999999999999999999999999999999999765567889999999999876 5899
Q ss_pred eeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCC------CChHHHhhhc---CCCc
Q 040810 215 QVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGR------LSFPTQTGRR---FNRK 282 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~------~Sl~~ql~~~---~~~~ 282 (480)
++.|++|+. .|.+++|+|+|++..++++.|||++...+. + ...+||||||++. .+++.||.++ ..++
T Consensus 62 ~~~Yg~Gs~-~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~ 140 (318)
T cd05477 62 SLQYGSGSL-TGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPI 140 (318)
T ss_pred EEEECCcEE-EEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCE
Confidence 999999986 599999999999999999999999986543 2 4579999999864 3678888875 4789
Q ss_pred EEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEE
Q 040810 283 FSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVII 359 (480)
Q Consensus 283 FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ii 359 (480)
||+||.+..... .|.|+||++| +.+++.|+|+.. ..+|.|+|++|+||++++. +. ..+..+||
T Consensus 141 FS~~L~~~~~~~-~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~-~~--------~~~~~~ii 206 (318)
T cd05477 141 FSFYLSGQQGQQ-GGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATG-WC--------SQGCQAIV 206 (318)
T ss_pred EEEEEcCCCCCC-CCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEec-cc--------CCCceeeE
Confidence 999998753222 6999999999 678999999875 5799999999999998875 32 12357999
Q ss_pred cccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcE
Q 040810 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTF 439 (480)
Q Consensus 360 DSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~ 439 (480)
||||++++||+++|++|++++.+... . ..+|.++|.....+|+|+|+|+|+++.||+++|+++. ...
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~---~~~ 273 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQD----Q------YGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN---NGY 273 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccc----c------CCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC---CCe
Confidence 99999999999999999999865421 1 1256777877778999999999999999999999864 457
Q ss_pred EE-EEEec------CCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 440 CF-AFAGT------MSGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 440 Cl-~~~~~------~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
|+ +|.+. +...+|||+.|||++|++||++++|||||++
T Consensus 274 C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 274 CTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 96 88753 1246999999999999999999999999985
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.5e-55 Score=438.60 Aligned_cols=294 Identities=25% Similarity=0.453 Sum_probs=245.7
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceeeee
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQVS 217 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~~ 217 (480)
|+++|+||||||++.|+|||||+++||+|..|..+.|+.++.|||++|+||+.. .|.|.+.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~-------------------~~~~~i~ 61 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSN-------------------GEAFSIQ 61 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccC-------------------CcEEEEE
Confidence 899999999999999999999999999999998544456789999999999876 5899999
Q ss_pred eCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHhhhc---CCCcEEE
Q 040810 218 YGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQTGRR---FNRKFSY 285 (480)
Q Consensus 218 Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql~~~---~~~~FS~ 285 (480)
|++|+. .|.+++|+|+|++..++++.|||+....+. | ...+||||||++.++ +..+|.++ ..++||+
T Consensus 62 Yg~g~~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~ 140 (316)
T cd05486 62 YGTGSL-TGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSV 140 (316)
T ss_pred eCCcEE-EEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEE
Confidence 999986 599999999999999999999999876543 3 467999999998765 45666655 4679999
Q ss_pred EeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEccc
Q 040810 286 CLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSG 362 (480)
Q Consensus 286 ~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSG 362 (480)
||.+.......|+|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+. .+ ....+|||||
T Consensus 141 ~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~-~~---------~~~~aiiDTG 206 (316)
T cd05486 141 YMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIF-CS---------DGCQAIVDTG 206 (316)
T ss_pred EEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEe-cC---------CCCEEEECCC
Confidence 99864332227999999998 678999999875 5799999999999998764 32 2357999999
Q ss_pred CcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-CCcEEE
Q 040810 363 TSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS-SGTFCF 441 (480)
Q Consensus 363 Tt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~-~g~~Cl 441 (480)
|+++++|++++++|.+++.+. ... .+|.++|.....+|+|+|+|+|++++|+|++|++.... .+..|+
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~-----~~~------~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~ 275 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGAT-----ATD------GEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCS 275 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCc-----ccC------CcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEe
Confidence 999999999999998877542 111 24566776667899999999999999999999987532 356897
Q ss_pred -EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 442 -AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 442 -~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
+|+.. ..+.||||++|||++|+|||.+++|||||+
T Consensus 276 ~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 276 SGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 67653 234799999999999999999999999996
No 10
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=6.9e-55 Score=440.66 Aligned_cols=293 Identities=26% Similarity=0.506 Sum_probs=245.6
Q ss_pred eeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceee
Q 040810 136 GEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQ 215 (480)
Q Consensus 136 ~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~ 215 (480)
++|+++|.||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+|++.++|.+..|.. ...|.+ +.|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~-~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLN-NKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCC-CcCcEE
Confidence 68999999999999999999999999999999999998888899999999999999999999953 234654 479999
Q ss_pred eeeCCCceeEEEEEEEEEEECCeeee-------eEEEEEEecCCCCc--cCCceEeecCCCCCC-hH---HHhhhc----
Q 040810 216 VSYGDGSITVGDFSTETLTFRGTRVA-------RVALGCGHDNEGLF--VAAAGLLGLGRGRLS-FP---TQTGRR---- 278 (480)
Q Consensus 216 ~~Ygdgs~~~G~~~~Dtvt~g~~~v~-------~~~fG~~~~~~~~~--~~~~GIlGLG~~~~S-l~---~ql~~~---- 278 (480)
+.|++|+.+.|.+++|+|+|++..++ ++.|||+....+.| ...+||||||+...+ .. .++..+
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~ 158 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKL 158 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccc
Confidence 99999987789999999999876553 57899999887665 467999999998753 21 112221
Q ss_pred -CCCcEEEEeccCCCCCCCcEEEeccCC---CC----------CCeEEEecccCCCCCeeEEEEEeeEEECCeeecceec
Q 040810 279 -FNRKFSYCLVDRSTSAKPSSMVFGDSA---VS----------RTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITA 344 (480)
Q Consensus 279 -~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~----------g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~ 344 (480)
..++||+||.+. .|.|+||++| +. +++.|+|+.. +.+|.|.+++|+||++... +..
T Consensus 159 ~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~-~~~ 228 (326)
T cd06096 159 KKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSN-SGN 228 (326)
T ss_pred cCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccc-eec
Confidence 248999999863 6999999998 33 7899999986 4699999999999988611 111
Q ss_pred cccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEc-CeEEE
Q 040810 345 SLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFR-GADVS 423 (480)
Q Consensus 345 ~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~-G~~~~ 423 (480)
.....+||||||++++||+++|++|.+++ |+|+|+|+ |++++
T Consensus 229 -------~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~ 271 (326)
T cd06096 229 -------TKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKID 271 (326)
T ss_pred -------ccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEE
Confidence 23567999999999999999999997665 88999999 89999
Q ss_pred ECCCCcEEEecCCCcEEEEEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 424 LPATNYLIPVDSSGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 424 l~~~~yl~~~~~~g~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
|+|++|+++... ...|+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 272 i~p~~y~~~~~~-~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 272 WKPSSYLYKKES-FWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ECHHHhccccCC-ceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999997652 3345566554 467999999999999999999999999999995
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.3e-53 Score=431.71 Aligned_cols=298 Identities=23% Similarity=0.443 Sum_probs=249.7
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCC--CCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCC
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKC--YSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNT 211 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~ 211 (480)
.+.+|+++|.||||+|++.|++||||+++||+|.+|..| .|..++.|||++|+|++.. .
T Consensus 8 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~-------------------~ 68 (329)
T cd05485 8 MDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKN-------------------G 68 (329)
T ss_pred cCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEEC-------------------C
Confidence 479999999999999999999999999999999999732 2235678999999999876 5
Q ss_pred ceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHhhhc---C
Q 040810 212 CLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQTGRR---F 279 (480)
Q Consensus 212 ~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql~~~---~ 279 (480)
|.|.+.|++|+. .|.+++|+++|++..++++.|||++...+. | ...+||||||++.++ +..||.++ .
T Consensus 69 ~~~~i~Y~~g~~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~ 147 (329)
T cd05485 69 TEFAIQYGSGSL-SGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVD 147 (329)
T ss_pred eEEEEEECCceE-EEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCC
Confidence 899999999985 599999999999999999999999876553 3 457999999998775 34677665 4
Q ss_pred CCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCc
Q 040810 280 NRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGG 356 (480)
Q Consensus 280 ~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~ 356 (480)
.+.||+||.+..+....|+|+||++| +.|++.|+|+.. +.+|.|.+++|+|+++.+. ..+..
T Consensus 148 ~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~-----------~~~~~ 212 (329)
T cd05485 148 APVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFC-----------SGGCQ 212 (329)
T ss_pred CCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeec-----------CCCcE
Confidence 68999999865433237999999998 568999999974 5799999999999998764 23457
Q ss_pred EEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-
Q 040810 357 VIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS- 435 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~- 435 (480)
+||||||++++||++++++|.+++.+.. . . ..||.++|.....+|+|+|+|+|+++.|++++|+++...
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~~~--~--~------~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~ 282 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGAKP--I--I------GGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQM 282 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCCcc--c--c------CCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCC
Confidence 9999999999999999999998886421 1 1 125677887767899999999999999999999998764
Q ss_pred CCcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 436 SGTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 436 ~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
+...|+ +|... ..+.+|||+.|||++|+|||++++|||||.
T Consensus 283 ~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 283 GQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 246898 67753 234699999999999999999999999984
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.1e-53 Score=428.80 Aligned_cols=292 Identities=25% Similarity=0.471 Sum_probs=245.9
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+.+|+++|.||||+|++.|++||||+++||+|.+|..+.|..++.|+|++|+||+.. .|.|
T Consensus 8 ~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~-------------------~~~~ 68 (320)
T cd05488 8 NAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKAN-------------------GTEF 68 (320)
T ss_pred CCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeC-------------------CCEE
Confidence 689999999999999999999999999999999998544456689999999999865 5899
Q ss_pred eeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCChHH------Hhhhc---CCCc
Q 040810 215 QVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLSFPT------QTGRR---FNRK 282 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~Sl~~------ql~~~---~~~~ 282 (480)
.+.|++|+. .|.+++|++++++..++++.|||++...+. + ...+||||||++..+... +|.++ ..++
T Consensus 69 ~~~y~~g~~-~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~ 147 (320)
T cd05488 69 KIQYGSGSL-EGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPV 147 (320)
T ss_pred EEEECCceE-EEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCE
Confidence 999999986 699999999999999999999999877654 2 467999999998876432 44443 4789
Q ss_pred EEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEE
Q 040810 283 FSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVII 359 (480)
Q Consensus 283 FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ii 359 (480)
||+||.+.... .|.|+||++| +.+++.|+|+.. ..+|.|.+++|+||++.+. .+ +..+||
T Consensus 148 FS~~L~~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~-~~----------~~~~iv 210 (320)
T cd05488 148 FSFYLGSSEED--GGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELE-LE----------NTGAAI 210 (320)
T ss_pred EEEEecCCCCC--CcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEec-cC----------CCeEEE
Confidence 99999976433 7999999998 678999999975 5699999999999998775 32 356999
Q ss_pred cccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcE
Q 040810 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTF 439 (480)
Q Consensus 360 DSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~ 439 (480)
||||++++||++++++|.+++.+... ...+|.++|.....+|+|+|+|+|++++||+++|+++. +..
T Consensus 211 DSGtt~~~lp~~~~~~l~~~~~~~~~----------~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~---~g~ 277 (320)
T cd05488 211 DTGTSLIALPSDLAEMLNAEIGAKKS----------WNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV---SGS 277 (320)
T ss_pred cCCcccccCCHHHHHHHHHHhCCccc----------cCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC---CCe
Confidence 99999999999999999988854211 12356777777678999999999999999999999853 347
Q ss_pred EE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 440 CF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 440 Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
|+ .|.+. ....||||+.|||++|+|||++++|||||+
T Consensus 278 C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 278 CISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 98 56543 134699999999999999999999999996
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=9.9e-53 Score=423.30 Aligned_cols=286 Identities=26% Similarity=0.486 Sum_probs=237.0
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC---CCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCC
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK---KCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRN 210 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~ 210 (480)
.+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|||++|+||+..
T Consensus 7 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~------------------- 65 (317)
T cd06098 7 LDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKN------------------- 65 (317)
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccC-------------------
Confidence 4789999999999999999999999999999999996 575 5689999999999876
Q ss_pred CceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHhhhc---
Q 040810 211 TCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQTGRR--- 278 (480)
Q Consensus 211 ~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql~~~--- 278 (480)
...+.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++..+ +..+|.++
T Consensus 66 ~~~~~i~Yg~G~~-~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i 144 (317)
T cd06098 66 GTSASIQYGTGSI-SGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLV 144 (317)
T ss_pred CCEEEEEcCCceE-EEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCC
Confidence 4788999999986 599999999999999999999999876542 3 467999999998764 34456554
Q ss_pred CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCC
Q 040810 279 FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNG 355 (480)
Q Consensus 279 ~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~ 355 (480)
..++||+||.+.......|+|+||++| +.|++.|+|+.. ..||.|.+++|+||++.+. +.. ...
T Consensus 145 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~-~~~--------~~~ 211 (317)
T cd06098 145 KEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTG-FCA--------GGC 211 (317)
T ss_pred CCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEee-ecC--------CCc
Confidence 467999999865332227999999998 678999999975 5799999999999998875 432 235
Q ss_pred cEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC
Q 040810 356 GVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS 435 (480)
Q Consensus 356 ~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~ 435 (480)
.+||||||+++++|++++++|. ..+ .|+. ...+|+|+|+|+|++++|+|++|+++...
T Consensus 212 ~aivDTGTs~~~lP~~~~~~i~----------------~~~-~C~~-----~~~~P~i~f~f~g~~~~l~~~~yi~~~~~ 269 (317)
T cd06098 212 AAIADSGTSLLAGPTTIVTQIN----------------SAV-DCNS-----LSSMPNVSFTIGGKTFELTPEQYILKVGE 269 (317)
T ss_pred EEEEecCCcceeCCHHHHHhhh----------------ccC-Cccc-----cccCCcEEEEECCEEEEEChHHeEEeecC
Confidence 7999999999999998876653 011 2543 35799999999999999999999987654
Q ss_pred -CCcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 436 -SGTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 436 -~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
....|+ +|... .+..||||+.|||++|+|||++++|||||+
T Consensus 270 ~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 270 GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 235897 67643 234699999999999999999999999995
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.1e-52 Score=424.50 Aligned_cols=298 Identities=21% Similarity=0.394 Sum_probs=247.3
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCC--CCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCC
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKC--YSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNT 211 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C--~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~ 211 (480)
.+..|+++|+||||+|++.|++||||+++||+|..|..| .|..++.|||++|+||+.. +
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~-------------------~ 65 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKEN-------------------G 65 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeEC-------------------C
Confidence 468999999999999999999999999999999989753 3456789999999999876 6
Q ss_pred ceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCC-Cc--cCCceEeecCCCCCC------hHHHhhhc---C
Q 040810 212 CLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEG-LF--VAAAGLLGLGRGRLS------FPTQTGRR---F 279 (480)
Q Consensus 212 ~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~-~~--~~~~GIlGLG~~~~S------l~~ql~~~---~ 279 (480)
|.|++.|++|++ .|.+++|+|++++..+. +.|||+....+ .| ...+||||||++..+ +..+|.++ .
T Consensus 66 ~~~~~~Yg~g~~-~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~ 143 (326)
T cd05487 66 TEFTIHYASGTV-KGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLK 143 (326)
T ss_pred EEEEEEeCCceE-EEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCC
Confidence 999999999985 69999999999998885 78999987542 22 468999999997654 34455554 5
Q ss_pred CCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCc
Q 040810 280 NRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGG 356 (480)
Q Consensus 280 ~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~ 356 (480)
.++||+||.+.......|.|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+. +. .+..
T Consensus 144 ~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~-~~---------~~~~ 209 (326)
T cd05487 144 EDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLL-CE---------DGCT 209 (326)
T ss_pred CCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEe-cC---------CCCE
Confidence 78999999875422237999999998 678999999865 5799999999999998765 32 2357
Q ss_pred EEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-
Q 040810 357 VIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS- 435 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~- 435 (480)
+||||||++++||.+++++|++++++... . .+|.++|.....+|+|+|+|+|++++|++++|+++..+
T Consensus 210 aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~------~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~ 278 (326)
T cd05487 210 AVVDTGASFISGPTSSISKLMEALGAKER-----L------GDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDF 278 (326)
T ss_pred EEECCCccchhCcHHHHHHHHHHhCCccc-----C------CCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCC
Confidence 99999999999999999999999864311 1 24566777767899999999999999999999997653
Q ss_pred CCcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 436 SGTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 436 ~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
.+..|+ +|... .++.||||+.|||++|+|||++++|||||++
T Consensus 279 ~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 279 SDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 356896 78753 2347999999999999999999999999985
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.3e-51 Score=427.72 Aligned_cols=303 Identities=19% Similarity=0.332 Sum_probs=245.9
Q ss_pred CceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCC
Q 040810 122 GFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKL 201 (480)
Q Consensus 122 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 201 (480)
...+|+..- .+.+|+++|+||||||++.|++||||+++||+|.+|..|.|+.++.|||++|+||+..
T Consensus 127 ~~~v~L~n~---~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~---------- 193 (453)
T PTZ00147 127 FDNVELKDL---ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKD---------- 193 (453)
T ss_pred CCeeecccc---CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEEC----------
Confidence 345666543 3689999999999999999999999999999999999777778899999999999876
Q ss_pred CCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC---c--cCCceEeecCCCCCC------
Q 040810 202 DSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL---F--VAAAGLLGLGRGRLS------ 270 (480)
Q Consensus 202 ~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~---~--~~~~GIlGLG~~~~S------ 270 (480)
++.|++.|++|+. .|.+++|+|++|+..++ ..|+|+.+..+. + ...+||||||++.++
T Consensus 194 ---------~~~f~i~Yg~Gsv-sG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p 262 (453)
T PTZ00147 194 ---------GTKVEMNYVSGTV-SGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDP 262 (453)
T ss_pred ---------CCEEEEEeCCCCE-EEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCC
Confidence 5899999999986 59999999999999998 579998865442 2 357999999998765
Q ss_pred hHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceec
Q 040810 271 FPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITA 344 (480)
Q Consensus 271 l~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~ 344 (480)
++.+|..+ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. +.+|.|.++ +.+|+...
T Consensus 263 ~~~~L~~qg~I~~~vFS~~L~~~~~~--~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~----- 330 (453)
T PTZ00147 263 YVVELKNQNKIEQAVFTFYLPPEDKH--KGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS----- 330 (453)
T ss_pred HHHHHHHcCCCCccEEEEEecCCCCC--CeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec-----
Confidence 45577665 467999999865433 7999999999 679999999964 579999998 47765422
Q ss_pred cccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEE
Q 040810 345 SLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSL 424 (480)
Q Consensus 345 ~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l 424 (480)
....+||||||+++++|++++++|.+++.+.. .+.. +. ....|+ . ..+|+|+|+|+|..++|
T Consensus 331 --------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~-~~-y~~~C~-----~-~~lP~~~f~f~g~~~~L 392 (453)
T PTZ00147 331 --------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL-PL-YVTTCN-----N-TKLPTLEFRSPNKVYTL 392 (453)
T ss_pred --------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC-Ce-EEEeCC-----C-CCCCeEEEEECCEEEEE
Confidence 23579999999999999999999999885431 1111 11 122354 3 46899999999999999
Q ss_pred CCCCcEEEecC-CCcEEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 425 PATNYLIPVDS-SGTFCF-AFAGTM--SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 425 ~~~~yl~~~~~-~g~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+|++|+.+..+ ....|+ +|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 393 ~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 393 EPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999986543 235797 788753 3579999999999999999999999999975
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=9.2e-52 Score=407.70 Aligned_cols=253 Identities=32% Similarity=0.681 Sum_probs=217.7
Q ss_pred eeEEEEEEecCCCcEEEEEEECCCCceEEec-CCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 136 GEYFTRLGVGTPPRYVYMVLDTGSDVVWIQC-APCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 136 ~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~-~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
|+|+++|.||||||++.|++||||+++||+| .+|..| .|.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------------------------------~c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------------------------------QCDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------------cCcc
Confidence 5899999999999999999999999999999 477666 2789
Q ss_pred eeeeCCCceeEEEEEEEEEEEC----CeeeeeEEEEEEecCCCCc----cCCceEeecCCCCCChHHHhhhc--CCCcEE
Q 040810 215 QVSYGDGSITVGDFSTETLTFR----GTRVARVALGCGHDNEGLF----VAAAGLLGLGRGRLSFPTQTGRR--FNRKFS 284 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g----~~~v~~~~fG~~~~~~~~~----~~~~GIlGLG~~~~Sl~~ql~~~--~~~~FS 284 (480)
++.|+||+.+.|.+++|+|+|+ +..++++.|||++++.+.+ ...+||||||+++.|+++||+.+ ..++||
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 9999988888899999999995 3577899999998765533 36799999999999999999865 568899
Q ss_pred EEeccCCCCCCCcEEEeccCC-CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccC
Q 040810 285 YCLVDRSTSAKPSSMVFGDSA-VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGT 363 (480)
Q Consensus 285 ~~L~~~~~~~~~g~L~fG~~d-~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGT 363 (480)
+||.+. . .|.|+||+.. +.+++.|+|+..++ ...+|.|++.+|+||++.+. .....+||||||
T Consensus 123 ~~l~~~--~--~g~l~~G~~~~~~g~i~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~-----------~~~~~~ivDTGT 186 (273)
T cd05475 123 HCLSSN--G--GGFLFFGDDLVPSSGVTWTPMRRES-QKKHYSPGPASLLFNGQPTG-----------GKGLEVVFDSGS 186 (273)
T ss_pred EEccCC--C--CeEEEECCCCCCCCCeeecccccCC-CCCeEEEeEeEEEECCEECc-----------CCCceEEEECCC
Confidence 999862 1 6999999655 56789999998764 25799999999999998543 234679999999
Q ss_pred cceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcC----eEEEECCCCcEEEecCCCcE
Q 040810 364 SVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRG----ADVSLPATNYLIPVDSSGTF 439 (480)
Q Consensus 364 t~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G----~~~~l~~~~yl~~~~~~g~~ 439 (480)
++++||+++| +|+|+|+|+| ++++||+++|+++.. ++..
T Consensus 187 t~t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~~~~ 229 (273)
T cd05475 187 SYTYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-KGNV 229 (273)
T ss_pred ceEEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-CCCE
Confidence 9999999876 6889999995 799999999999765 4678
Q ss_pred EEEEEecC----CCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 040810 440 CFAFAGTM----SGLSIIGNIQQQGFRVVYDLAASRIGFAPRGC 479 (480)
Q Consensus 440 Cl~~~~~~----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 479 (480)
|+++.... .+.||||+.|||++|++||++++|||||+++|
T Consensus 230 Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 230 CLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 99887542 34799999999999999999999999999999
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.8e-51 Score=420.38 Aligned_cols=311 Identities=25% Similarity=0.420 Sum_probs=238.7
Q ss_pred eeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceee
Q 040810 136 GEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQ 215 (480)
Q Consensus 136 ~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~ 215 (480)
.+|+++|.||||+|++.|+|||||+++||+|.+|. +.++.|||++|+||+.. +|.|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~-------------------~~~~~ 58 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDL-------------------GKGVT 58 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccC-------------------CceEE
Confidence 47999999999999999999999999999999873 34678999999999987 58999
Q ss_pred eeeCCCceeEEEEEEEEEEECCeeee--eEEEEEEecCCCCc---cCCceEeecCCCCCC--------hHHHhhhc--CC
Q 040810 216 VSYGDGSITVGDFSTETLTFRGTRVA--RVALGCGHDNEGLF---VAAAGLLGLGRGRLS--------FPTQTGRR--FN 280 (480)
Q Consensus 216 ~~Ygdgs~~~G~~~~Dtvt~g~~~v~--~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S--------l~~ql~~~--~~ 280 (480)
+.|++|++. |.+++|+|+|++.... .+.|++.++..+.+ ...+||||||++.++ +..+|.++ ..
T Consensus 59 i~Yg~Gs~~-G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~ 137 (364)
T cd05473 59 VPYTQGSWE-GELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIP 137 (364)
T ss_pred EEECcceEE-EEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCc
Confidence 999999874 9999999999853211 13456766655544 257999999998763 33455443 45
Q ss_pred CcEEEEeccC----C---CCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccC
Q 040810 281 RKFSYCLVDR----S---TSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLD 350 (480)
Q Consensus 281 ~~FS~~L~~~----~---~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~ 350 (480)
++||+||... + .....|.|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+. ++...+
T Consensus 138 ~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~-~~~~~~--- 209 (364)
T cd05473 138 DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLN-LDCKEY--- 209 (364)
T ss_pred cceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecc-cccccc---
Confidence 6999987531 0 11127999999998 678999999975 4799999999999999887 544332
Q ss_pred CCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCC--CccccccccCCCcccccceEEEEEcC------eEE
Q 040810 351 PAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDF--SLFDTCFDLSGKTEVKVPTVVLHFRG------ADV 422 (480)
Q Consensus 351 ~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~--~~~~~Cy~~~~~~~~~~P~lt~~F~G------~~~ 422 (480)
....+||||||++++||+++|++|+++++++........++ .....|+.........+|+|+|+|+| .++
T Consensus 210 --~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 210 --NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred --cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEE
Confidence 12469999999999999999999999998864311111111 11235776443323469999999974 478
Q ss_pred EECCCCcEEEecC--CCcEEEEEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 423 SLPATNYLIPVDS--SGTFCFAFAGT-MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 423 ~l~~~~yl~~~~~--~g~~Cl~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+|+|++|+++... .+..|+++... ..+.+|||++|||++|+|||++++|||||+.+|+
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 9999999986532 24689865432 2356999999999999999999999999999995
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.7e-50 Score=417.83 Aligned_cols=302 Identities=19% Similarity=0.315 Sum_probs=243.0
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLD 202 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 202 (480)
-..|+..- .+.+|+++|.||||+|++.|++||||+++||+|..|..+.|+.++.|||++|+||+..
T Consensus 127 ~~~~l~d~---~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~----------- 192 (450)
T PTZ00013 127 DVIELDDV---ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKD----------- 192 (450)
T ss_pred Cceeeecc---CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccC-----------
Confidence 34555433 3579999999999999999999999999999999998655567789999999999876
Q ss_pred CCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC---c--cCCceEeecCCCCCC------h
Q 040810 203 SSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL---F--VAAAGLLGLGRGRLS------F 271 (480)
Q Consensus 203 ~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~---~--~~~~GIlGLG~~~~S------l 271 (480)
+|.+.+.||+|++ .|.+++|+|+||+..++ ..|+++.+..+. + ..++||||||++.++ +
T Consensus 193 --------~~~~~i~YG~Gsv-~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~ 262 (450)
T PTZ00013 193 --------GTKVDITYGSGTV-KGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPI 262 (450)
T ss_pred --------CcEEEEEECCceE-EEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCH
Confidence 5899999999985 59999999999999887 578888765321 2 357999999998764 5
Q ss_pred HHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecc
Q 040810 272 PTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITAS 345 (480)
Q Consensus 272 ~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~ 345 (480)
+.+|.++ ..++||+||.+.... .|.|+|||+| +.|++.|+|+.. +.||.|.++ +.+|.....
T Consensus 263 ~~~L~~qg~I~~~vFS~~L~~~~~~--~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~~----- 330 (450)
T PTZ00013 263 VVELKNQNKIDNALFTFYLPVHDVH--AGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTMQ----- 330 (450)
T ss_pred HHHHHhccCcCCcEEEEEecCCCCC--CCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceecc-----
Confidence 6677765 567999999865333 7999999999 579999999964 579999998 667644322
Q ss_pred ccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEEC
Q 040810 346 LFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLP 425 (480)
Q Consensus 346 ~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~ 425 (480)
...+||||||+++++|+++++++.+++.... .+. .+ .|..+|.. ..+|+|+|+|+|.+++|+
T Consensus 331 --------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~-~~------~y~~~C~~-~~lP~i~F~~~g~~~~L~ 392 (450)
T PTZ00013 331 --------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF-LP------FYVTTCDN-KEMPTLEFKSANNTYTLE 392 (450)
T ss_pred --------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCC-CC------eEEeecCC-CCCCeEEEEECCEEEEEC
Confidence 3569999999999999999999998885431 111 11 13334443 568999999999999999
Q ss_pred CCCcEEEecC-CCcEEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 426 ATNYLIPVDS-SGTFCF-AFAGTM--SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 426 ~~~yl~~~~~-~g~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
|++|+.+... ++..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 393 p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 393 PEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9999976432 356897 777652 4579999999999999999999999999975
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=7.7e-51 Score=399.45 Aligned_cols=258 Identities=52% Similarity=0.927 Sum_probs=226.1
Q ss_pred eEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceeee
Q 040810 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQV 216 (480)
Q Consensus 137 ~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~ 216 (480)
+|+++|+||||||++.|++||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 699999999999999999999999999986 35788
Q ss_pred eeCCCceeEEEEEEEEEEECCe--eeeeEEEEEEecCCCCc-cCCceEeecCCCCCChHHHhhhcCCCcEEEEeccCCCC
Q 040810 217 SYGDGSITVGDFSTETLTFRGT--RVARVALGCGHDNEGLF-VAAAGLLGLGRGRLSFPTQTGRRFNRKFSYCLVDRSTS 293 (480)
Q Consensus 217 ~Ygdgs~~~G~~~~Dtvt~g~~--~v~~~~fG~~~~~~~~~-~~~~GIlGLG~~~~Sl~~ql~~~~~~~FS~~L~~~~~~ 293 (480)
.|+||+...|.+++|+|+|++. .++++.|||++...+.. ..++||||||+...|+++||..+. ++||+||.+....
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~~~~ 114 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHDDT 114 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCCCCC
Confidence 9999988889999999999988 89999999999876522 578999999999999999998655 7999999875322
Q ss_pred CCCcEEEeccCCC--CCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 294 AKPSSMVFGDSAV--SRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 294 ~~~g~L~fG~~d~--~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
...|+|+||++|. .+++.|+|++.++....+|.|+|++|+|+++.+. +++..+.........+||||||++++||++
T Consensus 115 ~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~-~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 115 GGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLP-IPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEec-CCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 2279999999994 6899999999865456799999999999999987 766655444455678999999999999998
Q ss_pred HHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEc-CeEEEECCCCcEEEecCCCcEEEEEEec-CCC
Q 040810 372 AYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFR-GADVSLPATNYLIPVDSSGTFCFAFAGT-MSG 449 (480)
Q Consensus 372 ~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~-G~~~~l~~~~yl~~~~~~g~~Cl~~~~~-~~~ 449 (480)
+| |+|+|+|+ |.++.+++++|+++.. .+..|+++... ..+
T Consensus 194 ~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~~~~~~~~~ 235 (265)
T cd05476 194 AY-------------------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLAILSSSSGG 235 (265)
T ss_pred cc-------------------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEEEecCCCCC
Confidence 87 88999999 9999999999999654 46799998876 466
Q ss_pred ceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 040810 450 LSIIGNIQQQGFRVVYDLAASRIGFAPRGC 479 (480)
Q Consensus 450 ~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C 479 (480)
.+|||+.|||++|++||++++|||||+++|
T Consensus 236 ~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 236 VSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred cEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.2e-49 Score=389.79 Aligned_cols=262 Identities=25% Similarity=0.391 Sum_probs=222.3
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceeeee
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQVS 217 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~~ 217 (480)
|+++|+||||+|++.|++||||+++||+|..|..|.++.++.|||++|+|++..+ .|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~------------------~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP------------------GATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC------------------CcEEEEE
Confidence 7999999999999999999999999999999999988888899999999998764 5899999
Q ss_pred eCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCCh---------HHHhhhc-CCCcEE
Q 040810 218 YGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLSF---------PTQTGRR-FNRKFS 284 (480)
Q Consensus 218 Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~Sl---------~~ql~~~-~~~~FS 284 (480)
|++|+...|.+++|+|+|++..++++.|||++...+. + ...+||||||+..++. ..+|..+ ..+.||
T Consensus 63 Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs 142 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFT 142 (278)
T ss_pred eCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEE
Confidence 9999866799999999999999999999999987652 2 4789999999986643 3444433 368999
Q ss_pred EEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcc
Q 040810 285 YCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDS 361 (480)
Q Consensus 285 ~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDS 361 (480)
+||.+. . .|+|+||++| +.|++.|+|+..+ ..+|.|++++|+||++... . ..+..+||||
T Consensus 143 ~~l~~~--~--~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~-~---------~~~~~~iiDS 205 (278)
T cd06097 143 ADLRKA--A--PGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPW-S---------RSGFSAIADT 205 (278)
T ss_pred EEecCC--C--CcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCccee-e---------cCCceEEeec
Confidence 999862 2 7999999999 6799999999864 5799999999999988432 1 2346799999
Q ss_pred cCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcEEE
Q 040810 362 GTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTFCF 441 (480)
Q Consensus 362 GTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~Cl 441 (480)
||+++++|++++++|.+++.+.. +.. ...+|.++|+.. +|+|+|+|
T Consensus 206 GTs~~~lP~~~~~~l~~~l~g~~--~~~------~~~~~~~~C~~~--~P~i~f~~------------------------ 251 (278)
T cd06097 206 GTTLILLPDAIVEAYYSQVPGAY--YDS------EYGGWVFPCDTT--LPDLSFAV------------------------ 251 (278)
T ss_pred CCchhcCCHHHHHHHHHhCcCCc--ccC------CCCEEEEECCCC--CCCEEEEE------------------------
Confidence 99999999999999999884321 111 123577888864 99999999
Q ss_pred EEEecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 442 AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 442 ~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.4e-47 Score=381.71 Aligned_cols=271 Identities=27% Similarity=0.458 Sum_probs=228.2
Q ss_pred eEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceeee
Q 040810 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQV 216 (480)
Q Consensus 137 ~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~ 216 (480)
.|+++|.||||+|++.|++||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999997 3577
Q ss_pred eeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCC-----------ChHHHhhhc---CCCc
Q 040810 217 SYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRL-----------SFPTQTGRR---FNRK 282 (480)
Q Consensus 217 ~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~-----------Sl~~ql~~~---~~~~ 282 (480)
.|++|+...|.+++|+|+|++..++++.|||+++.. ..+||||||+.+. +++.||.++ ..+.
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~ 110 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNA 110 (295)
T ss_pred EeccCCcEEEEEEEEEEEECCeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceE
Confidence 899987777999999999999999999999999853 5799999999886 688999876 4688
Q ss_pred EEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCC--CCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 283 FSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPK--LDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 283 FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~--~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
||+||.+.... .|.|+||++| +.+++.|+|+..++. ...+|.|.+++|+|+++.+. .+. ......+
T Consensus 111 Fsl~l~~~~~~--~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~-~~~------~~~~~~~ 181 (295)
T cd05474 111 YSLYLNDLDAS--TGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGN-TTL------LSKNLPA 181 (295)
T ss_pred EEEEeCCCCCC--ceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCc-ccc------cCCCccE
Confidence 99999875433 7999999998 568999999997642 23799999999999999875 421 1345789
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC--
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS-- 435 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~-- 435 (480)
||||||++++||+++|++|.+++.+.... ..+ +|..+|..... |+|+|+|+|++++||+++|+++...
T Consensus 182 iiDSGt~~~~lP~~~~~~l~~~~~~~~~~---~~~------~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~ 251 (295)
T cd05474 182 LLDSGTTLTYLPSDIVDAIAKQLGATYDS---DEG------LYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDD 251 (295)
T ss_pred EECCCCccEeCCHHHHHHHHHHhCCEEcC---CCc------EEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCC
Confidence 99999999999999999999999765321 111 34445554445 9999999999999999999998642
Q ss_pred -CCcEEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 436 -SGTFCF-AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 436 -~g~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
.+..|+ +|.+.+.+.+|||++|||++|++||.+++|||||++
T Consensus 252 ~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 252 GGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 356785 888876578999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-47 Score=384.66 Aligned_cols=294 Identities=26% Similarity=0.535 Sum_probs=251.4
Q ss_pred eEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCC-CCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceee
Q 040810 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKC-YSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQ 215 (480)
Q Consensus 137 ~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C-~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~ 215 (480)
+|+++|.||||+|++.|++||||+.+||++..|..| .+.....|+|.+|+|++.. .+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~-------------------~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ-------------------GKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE-------------------EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc-------------------eeeee
Confidence 699999999999999999999999999999999987 6667899999999999987 58899
Q ss_pred eeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC---ccCCceEeecCCCC-------CChHHHhhhc---CCCc
Q 040810 216 VSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL---FVAAAGLLGLGRGR-------LSFPTQTGRR---FNRK 282 (480)
Q Consensus 216 ~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~---~~~~~GIlGLG~~~-------~Sl~~ql~~~---~~~~ 282 (480)
+.|++|+ ..|.+++|+|+|++..++++.||++....+. ....+||||||+.. .+++.+|.++ ..++
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~ 140 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNV 140 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSE
T ss_pred eeccCcc-cccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccc
Confidence 9999999 5699999999999999999999999986443 26789999999753 3677888876 5789
Q ss_pred EEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEE
Q 040810 283 FSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVII 359 (480)
Q Consensus 283 FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ii 359 (480)
||++|.+.... .|.|+||++| +.+++.|+|+.. ..+|.|.+++|+++++... ... ...++|
T Consensus 141 fsl~l~~~~~~--~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~-~~~---------~~~~~~ 204 (317)
T PF00026_consen 141 FSLYLNPSDSQ--NGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVF-SSS---------GQQAIL 204 (317)
T ss_dssp EEEEEESTTSS--EEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEE-EEE---------EEEEEE
T ss_pred cceeeeecccc--cchheeeccccccccCceeccCccc----ccccccccccccccccccc-ccc---------ceeeec
Confidence 99999987622 7999999998 578999999984 6799999999999999332 211 235999
Q ss_pred cccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCC-Cc
Q 040810 360 DSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSS-GT 438 (480)
Q Consensus 360 DSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~-g~ 438 (480)
||||++++||.+++++|++++...... .+|.++|.....+|.++|+|+|.+++||+++|+++.... ..
T Consensus 205 Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~ 273 (317)
T PF00026_consen 205 DTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGG 273 (317)
T ss_dssp ETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSS
T ss_pred ccccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEeeCCEEEEecchHhcccccccccc
Confidence 999999999999999999999775332 357788888788999999999999999999999987752 34
Q ss_pred EEE-EEEe----cCCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 439 FCF-AFAG----TMSGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 439 ~Cl-~~~~----~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
.|+ +|.+ .....+|||.+|||++|++||.+++|||||++
T Consensus 274 ~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 274 YCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 896 7777 24567999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-45 Score=364.44 Aligned_cols=267 Identities=33% Similarity=0.644 Sum_probs=229.0
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCC--CCCCCCCCccccCCCCcccCCCCCCCCCCCCCceee
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPV--FDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQ 215 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~--fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~ 215 (480)
|+++|.||||+|++.|++||||+++||+|..|..|.++.... |++..|+++... .|.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~-------------------~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT-------------------GCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC-------------------CCEEE
Confidence 789999999999999999999999999999999887766655 788888777654 69999
Q ss_pred eeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc--cCCceEeecCCCC------CChHHHhhhc---CCCcEE
Q 040810 216 VSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF--VAAAGLLGLGRGR------LSFPTQTGRR---FNRKFS 284 (480)
Q Consensus 216 ~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~--~~~~GIlGLG~~~------~Sl~~ql~~~---~~~~FS 284 (480)
+.|++|+.. |.+++|+|+|++..++++.|||+++..+.+ ...+||||||+.. .+++.||.++ ..++||
T Consensus 62 ~~Y~~g~~~-g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs 140 (283)
T cd05471 62 ITYGDGSVT-GGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFS 140 (283)
T ss_pred EEECCCeEE-EEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEE
Confidence 999999776 999999999999999999999999887533 5789999999998 7899999986 579999
Q ss_pred EEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcc
Q 040810 285 YCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDS 361 (480)
Q Consensus 285 ~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDS 361 (480)
+||.+.......|.|+||++| +.+++.|+|+..+ ...+|.|.|++|+|+++... . ......+||||
T Consensus 141 ~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~-~--------~~~~~~~iiDs 209 (283)
T cd05471 141 FYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVI-S--------SSGGGGAIVDS 209 (283)
T ss_pred EEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceee-e--------cCCCcEEEEec
Confidence 999985311127999999999 4689999999975 36799999999999987411 1 13456899999
Q ss_pred cCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcEEE
Q 040810 362 GTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTFCF 441 (480)
Q Consensus 362 GTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~Cl 441 (480)
||++++||+++|++|.+++.+.... ...|+...|.....+|+|+|+|
T Consensus 210 Gt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------------ 256 (283)
T cd05471 210 GTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------------ 256 (283)
T ss_pred CCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE------------------------
Confidence 9999999999999999999876432 2346677777778999999999
Q ss_pred EEEecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 442 AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 442 ~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
.+|||++|||++|++||.++++||||+
T Consensus 257 --------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=7.9e-33 Score=251.97 Aligned_cols=156 Identities=46% Similarity=0.908 Sum_probs=129.2
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCC--CCC-CCCCcee
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSS--GCN-RRNTCLY 214 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~--~C~-~~~~~~y 214 (480)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|...... .|. .++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 46899999999999999999999987643 333 3668999
Q ss_pred eeeeCCCceeEEEEEEEEEEECC-----eeeeeEEEEEEecCCCCccCCceEeecCCCCCChHHHhhhcCCCcEEEEecc
Q 040810 215 QVSYGDGSITVGDFSTETLTFRG-----TRVARVALGCGHDNEGLFVAAAGLLGLGRGRLSFPTQTGRRFNRKFSYCLVD 289 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~-----~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~Sl~~ql~~~~~~~FS~~L~~ 289 (480)
.+.|++++.+.|.+++|+|+++. ..+.++.|||++.+.+.+..++||||||++++||++||.+...++|||||++
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~ 151 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS 151 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC
Confidence 99999999999999999999964 5789999999999998888999999999999999999977779999999999
Q ss_pred CCCCCCCcEEEecc
Q 040810 290 RSTSAKPSSMVFGD 303 (480)
Q Consensus 290 ~~~~~~~g~L~fG~ 303 (480)
. +....|.|+||+
T Consensus 152 ~-~~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 S-SPSSSGFLSFGD 164 (164)
T ss_dssp --SSSSEEEEEECS
T ss_pred C-CCCCCEEEEeCc
Confidence 2 222289999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=1.2e-28 Score=223.94 Aligned_cols=150 Identities=53% Similarity=0.929 Sum_probs=124.4
Q ss_pred eEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCC--c-CCCCCcccccc
Q 040810 324 FYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLK--R-APDFSLFDTCF 400 (480)
Q Consensus 324 ~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~--~-~~~~~~~~~Cy 400 (480)
+|+|+|++|+||++++. +++..|+. .++.+++||||||++|+||+++|++|+++|.+++.... + ......++.||
T Consensus 1 ~Y~v~l~~Isvg~~~l~-~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLP-IPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCY 78 (161)
T ss_dssp SEEEEEEEEEETTEEE----TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EE
T ss_pred CccEEEEEEEECCEEec-CChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCcee
Confidence 69999999999999999 99999988 78889999999999999999999999999999887543 1 23456788999
Q ss_pred ccCC----CcccccceEEEEEc-CeEEEECCCCcEEEecCCCcEEEEEEec---CCCceeecHhhhcceEEEEECCCCEE
Q 040810 401 DLSG----KTEVKVPTVVLHFR-GADVSLPATNYLIPVDSSGTFCFAFAGT---MSGLSIIGNIQQQGFRVVYDLAASRI 472 (480)
Q Consensus 401 ~~~~----~~~~~~P~lt~~F~-G~~~~l~~~~yl~~~~~~g~~Cl~~~~~---~~~~~IlG~~fl~~~yvvfD~~~~rI 472 (480)
+.+. .....+|+|+|||. |++++|++++|+++.+ .+.+|++|.++ ..+.+|||+.+|++++++||++++||
T Consensus 79 ~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 79 NLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp EGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred eccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 9887 35578999999999 8999999999999987 58999999988 56789999999999999999999999
Q ss_pred EEee
Q 040810 473 GFAP 476 (480)
Q Consensus 473 GFa~ 476 (480)
||+|
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=3.2e-24 Score=181.82 Aligned_cols=105 Identities=32% Similarity=0.725 Sum_probs=95.5
Q ss_pred EEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCC-CCCCCCCccccCCCCcccCCCCCCCCCCCCCceeeeee
Q 040810 140 TRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVF-DPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQVSY 218 (480)
Q Consensus 140 ~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~f-dps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~~Y 218 (480)
++|.||||||++.|+|||||+++||+|.+|..|.++..+.| +|++|++++.. .|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~-------------------~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN-------------------GCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC-------------------CcEEEEEe
Confidence 47999999999999999999999999999998887777777 99999999876 59999999
Q ss_pred CCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeec
Q 040810 219 GDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGL 264 (480)
Q Consensus 219 gdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGL 264 (480)
++|+.. |.+++|+|+|++..++++.|||++...+.+ ...+|||||
T Consensus 62 ~~g~~~-g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTGSLS-GGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCeEE-EEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 999865 999999999999999999999999987753 568999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.16 E-value=8.5e-06 Score=66.47 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=69.9
Q ss_pred eeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceee
Q 040810 136 GEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQ 215 (480)
Q Consensus 136 ~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~ 215 (480)
+.|++++.|| .+++.+++|||++.+|+.-.-...+.. .. .. .....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~------------~~--~~------------------~~~~~ 46 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL------------PL--TL------------------GGKVT 46 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC------------Cc--cC------------------CCcEE
Confidence 3689999999 899999999999999996543222210 00 00 24556
Q ss_pred eeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCC
Q 040810 216 VSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGR 266 (480)
Q Consensus 216 ~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~ 266 (480)
+...+|.........+.+++|+..++++.+........ ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 77788877666777899999999999999988876543 5799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.05 E-value=0.0046 Score=53.24 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=64.6
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+|.|++++.|. .+++.+++|||++.+-+...--.... .++.. . ....
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~------~-------------------~~~~ 55 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRLG------LDLNR------L-------------------GYTV 55 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC------CCccc------C-------------------CceE
Confidence 69999999998 78999999999999988543211110 01100 0 1233
Q ss_pred eeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecC
Q 040810 215 QVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLG 265 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG 265 (480)
.+.=..|......+.-|.+++|+..+.|+++.+..... ..+|+||+.
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~----~~~~LLGm~ 102 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA----LSESLLGMS 102 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc----CCceEcCHH
Confidence 44445666554566889999999999999988875432 237999986
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.72 E-value=0.017 Score=46.07 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=56.9
Q ss_pred EEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCceeeeeeC
Q 040810 140 TRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLYQVSYG 219 (480)
Q Consensus 140 ~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y~~~Yg 219 (480)
+++.|+ .+++.+++|||++.+.+.-.-+.... ..+... .....+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~-------------------------~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPK-------------------------SVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCC-------------------------ceeEEEEeC
Confidence 356777 78999999999998887543322110 000000 112333444
Q ss_pred CCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecC
Q 040810 220 DGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLG 265 (480)
Q Consensus 220 dgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG 265 (480)
+|.........+.+++|+..+.++.|-..... ...+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIGGITLKNVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEECCEEEEeEEEEEECCC----CCCEEEeCCc
Confidence 55555456667789999999999988777722 3578999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.67 E-value=0.14 Score=44.20 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=51.6
Q ss_pred EEEcccCcceeeCHHHHHHHHHHHHhhhccCC-cCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC
Q 040810 357 VIIDSGTSVTRLTRPAYIALRDAFRAGASSLK-RAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS 435 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~-~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~ 435 (480)
++||||.+.+.++++..+++--..... ..+. ...+.... .+ ........+.++|..+.+ +
T Consensus 30 ~LvDTGAs~s~Is~~~a~~lgl~~~~~-~~~~~~~~g~g~~-~~-------~g~~~~~~l~i~~~~~~~---~------- 90 (124)
T cd05479 30 AFVDSGAQMTIMSKACAEKCGLMRLID-KRFQGIAKGVGTQ-KI-------LGRIHLAQVKIGNLFLPC---S------- 90 (124)
T ss_pred EEEeCCCceEEeCHHHHHHcCCccccC-cceEEEEecCCCc-EE-------EeEEEEEEEEECCEEeee---E-------
Confidence 799999999999998877642111000 0000 00010000 00 011233444444443221 1
Q ss_pred CCcEEEEEEecCCCceeecHhhhcceEEEEECCCCEEEE
Q 040810 436 SGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGF 474 (480)
Q Consensus 436 ~g~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGF 474 (480)
+.+.+...-..|||..||+.+-.+.|+.+++|-|
T Consensus 91 -----~~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 91 -----FTVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred -----EEEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 1222333446899999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.62 E-value=0.41 Score=41.23 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=59.5
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
...+++++.|+ ++++.+++|||++.+++.-.-+..+.-+.. . ...+
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~~~------~--------------------------~~~~ 59 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLMRL------I--------------------------DKRF 59 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCccc------c--------------------------Ccce
Confidence 46789999999 899999999999999986544333321100 0 0112
Q ss_pred e-eeeC-CCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecC
Q 040810 215 Q-VSYG-DGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLG 265 (480)
Q Consensus 215 ~-~~Yg-dgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG 265 (480)
. ...+ ++....|..-.+.+.+++..++ +.|.+.... ..++|||+-
T Consensus 60 ~~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~-----~~d~ILG~d 106 (124)
T cd05479 60 QGIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD-----DVDFLIGLD 106 (124)
T ss_pred EEEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC-----CcCEEecHH
Confidence 1 1233 2233446666778999998875 677666433 579999986
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=93.32 E-value=2.1 Score=43.39 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=59.3
Q ss_pred EEEEEEecCCC----cEE-EEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCc
Q 040810 138 YFTRLGVGTPP----RYV-YMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTC 212 (480)
Q Consensus 138 Y~~~i~iGTP~----q~~-~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 212 (480)
-++.|+|=-|. |++ +|+|||||.-+=|....-..-. .+..-+ .+..-..+ .+|
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~l---~~~Lp~-~t~~g~~l------------aEC------ 81 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSSL---AGSLPQ-QTGGGAPL------------AEC------ 81 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchhh---hccCCc-ccCCCcch------------hhh------
Confidence 46667775443 555 8999999998877654210000 001111 11111111 112
Q ss_pred eeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecC-----------CCC------ccCCceEeecCCCC
Q 040810 213 LYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDN-----------EGL------FVAAAGLLGLGRGR 268 (480)
Q Consensus 213 ~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~-----------~~~------~~~~~GIlGLG~~~ 268 (480)
..|++|..+ |-+-+-.|+|++..-.++++-+..+. .+. ..++.||||+|.-.
T Consensus 82 ---~~F~sgytW-GsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 82 ---AQFASGYTW-GSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred ---hhccCcccc-cceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 246776665 99999999999876555555555331 111 14789999998743
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.28 E-value=0.23 Score=40.12 Aligned_cols=29 Identities=28% Similarity=0.206 Sum_probs=25.5
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecCC
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~ 168 (480)
|++++.|+ .+++.+.+||||+.+++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 899999999999999996543
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=90.52 E-value=1 Score=41.95 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=69.9
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCce
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCL 213 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 213 (480)
++|-|.++..|- +|++.+++|||-+.+-+.-+.-.. --||.+.. +.+
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l-------------------------~y~ 148 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSL-------------------------DYT 148 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCcccc-------------------------CCc
Confidence 479999999998 899999999999998886543211 12332221 366
Q ss_pred eeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCCChHHHhh
Q 040810 214 YQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRLSFPTQTG 276 (480)
Q Consensus 214 y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~Sl~~ql~ 276 (480)
+.+.-.+|......+--|.+.||++.++|+.=-++.+.. ...-+||+ ||+.|+.
T Consensus 149 ~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~----L~~sLLGM-----SfL~rL~ 202 (215)
T COG3577 149 ITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVAEDGA----LDESLLGM-----SFLNRLS 202 (215)
T ss_pred eEEEccCCccccceEEeeeEEEccEEEcCchhheecCCc----cchhhhhH-----HHHhhcc
Confidence 777788998876677789999999999887654443321 12334444 5777765
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.46 E-value=2.7 Score=33.54 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=21.4
Q ss_pred EEEecCCCcEEEEEEECCCCceEEecCC
Q 040810 141 RLGVGTPPRYVYMVLDTGSDVVWIQCAP 168 (480)
Q Consensus 141 ~i~iGTP~q~~~~ivDTGS~~~Wv~~~~ 168 (480)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 789999999999999996543
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=88.03 E-value=1.4 Score=38.62 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=26.3
Q ss_pred CceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 449 GLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 449 ~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
-..|||..+|+.+...-|+.+++|-|...
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 45899999999999999999999999754
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.82 E-value=2.9 Score=34.96 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred CceeecHhhhcceEEEEECCCCEE
Q 040810 449 GLSIIGNIQQQGFRVVYDLAASRI 472 (480)
Q Consensus 449 ~~~IlG~~fl~~~yvvfD~~~~rI 472 (480)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 368999999999999999988753
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.32 E-value=1.5 Score=33.86 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.3
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCC
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKK 171 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~ 171 (480)
.+.+++.+.|| ++.+.+++|||++...|...-+..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~r 40 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLAKR 40 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHHH
Confidence 58999999999 799999999999999987665543
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=84.96 E-value=2 Score=36.76 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=29.0
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
.++|+++ +.|+|+++. ++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------------EEEECCCCcEEcCHHHHHHc
Confidence 5677766 677887655 79999999999999887665
No 40
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=83.76 E-value=11 Score=34.06 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEcccCcceeeCHHHHHHHH
Q 040810 357 VIIDSGTSVTRLTRPAYIALR 377 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l~ 377 (480)
++||||+....+-.+..+.|.
T Consensus 48 vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEeCCCccceeehhhHHhhC
Confidence 899999999999988877763
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.30 E-value=1.7 Score=35.48 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.8
Q ss_pred EEEEEecCCCcEEEEEEECCCCceEEecCC
Q 040810 139 FTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168 (480)
Q Consensus 139 ~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~ 168 (480)
+.+|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5778888 789999999999999997553
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.43 E-value=2.3 Score=33.41 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.4
Q ss_pred EEEcccCcceeeCHHHHHHH
Q 040810 357 VIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l 376 (480)
++||||.+.+.+.++.++++
T Consensus 12 ~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 12 FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEcCCCCcEEECHHHHHHc
Confidence 89999999999999888776
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.19 E-value=3.3 Score=33.23 Aligned_cols=30 Identities=20% Similarity=0.479 Sum_probs=25.8
Q ss_pred eEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 331 GISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 331 gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
.+.|+|+.+. +.+|||.+.+.++++.+..+
T Consensus 4 ~~~Ing~~i~----------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------------EEEcCCcceEEeCHHHHHHh
Confidence 3678888776 79999999999999988876
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=72.22 E-value=4.9 Score=32.36 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.3
Q ss_pred EEEecCCCcEEEEEEECCCCceEEecC
Q 040810 141 RLGVGTPPRYVYMVLDTGSDVVWIQCA 167 (480)
Q Consensus 141 ~i~iGTP~q~~~~ivDTGS~~~Wv~~~ 167 (480)
.+.|+ .|.+.+++|||++++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999653
No 45
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=71.89 E-value=6 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=24.9
Q ss_pred EEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 332 ISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 332 isVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
+.|+|..+. +++|||.+..+++.+..+.+
T Consensus 13 ~~I~g~~~~----------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------------EEEeCCCcceecCHHHHHHh
Confidence 567777665 89999999999999998887
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.61 E-value=6.9 Score=31.02 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=23.8
Q ss_pred EEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 332 ISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 332 isVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
+.||++.+. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~----------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR----------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE----------------EEEECCCCcEEcCHHHHHHc
Confidence 677777665 79999999999999877665
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=61.94 E-value=11 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.3
Q ss_pred EEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 332 ISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 332 isVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------------EEEECCCCeEEECHHHhhhc
Confidence 567777665 79999999999999988775
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=53.75 E-value=11 Score=30.60 Aligned_cols=26 Identities=15% Similarity=0.566 Sum_probs=20.9
Q ss_pred eEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHH
Q 040810 331 GISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPA 372 (480)
Q Consensus 331 gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~ 372 (480)
.|.++|+.+. ++||||...+.++++.
T Consensus 9 ~v~i~g~~i~----------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK----------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE----------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE----------------EEEecCCCcceecccc
Confidence 3667777665 8999999999999753
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.36 E-value=25 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=23.8
Q ss_pred EEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 332 ISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 332 isVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
++|+|+.+. ++||||+..+.++.+.++++
T Consensus 29 ~~ing~~vk----------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK----------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE----------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE----------------EEEeCCCCccccCHHHHHHc
Confidence 678898876 89999999999999988874
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.01 E-value=23 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=18.9
Q ss_pred EEEcccCcceeeCHHHHHHHH
Q 040810 357 VIIDSGTSVTRLTRPAYIALR 377 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l~ 377 (480)
+.+|||.+...+|...|..+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 799999999999999888774
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=42.37 E-value=51 Score=30.93 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=29.9
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIAL 376 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l 376 (480)
+++|.++ ..|||+.+. .++|||.|...|+++....+
T Consensus 103 ~GHF~a~---~~VNGk~v~----------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE----------------EEEecCcceeecCHHHHHHh
Confidence 6777766 689999887 69999999999999876554
No 52
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=35.08 E-value=3.4e+02 Score=27.77 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=30.8
Q ss_pred EE-EEEEecCCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 439 FC-FAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 439 ~C-l~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
.| +.+....+-...||.-.||.+--.-|++++++-|+..
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 47 4666654456889999999999999999998877643
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=31.30 E-value=63 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=21.7
Q ss_pred EEEEEecCCCcEEEEEEECCCCceEEec
Q 040810 139 FTRLGVGTPPRYVYMVLDTGSDVVWIQC 166 (480)
Q Consensus 139 ~~~i~iGTP~q~~~~ivDTGS~~~Wv~~ 166 (480)
...+.+++-..+++++|||||..-.+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 3444555558999999999999988854
No 54
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=31.16 E-value=44 Score=27.21 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.7
Q ss_pred cEEEcccCcceeeCHHH
Q 040810 356 GVIIDSGTSVTRLTRPA 372 (480)
Q Consensus 356 ~~iiDSGTt~t~Lp~~~ 372 (480)
.++||||++.++++..-
T Consensus 13 ~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 13 NVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEeCCCCCEEEeCCC
Confidence 48999999999999753
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.55 E-value=39 Score=29.03 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=18.2
Q ss_pred EEEcccCc-ceeeCHHHHHHH
Q 040810 357 VIIDSGTS-VTRLTRPAYIAL 376 (480)
Q Consensus 357 ~iiDSGTt-~t~Lp~~~y~~l 376 (480)
.+||||-+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999887
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=27.84 E-value=99 Score=26.63 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=25.1
Q ss_pred eeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCC
Q 040810 136 GEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKC 172 (480)
Q Consensus 136 ~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C 172 (480)
...|+++.|+ .+++.+.+|||.-.+-+.-+-+..|
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 5679999999 8999999999999988865533455
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.16 E-value=64 Score=26.39 Aligned_cols=9 Identities=44% Similarity=0.231 Sum_probs=6.1
Q ss_pred CCccchhHH
Q 040810 1 MEGKARNHL 9 (480)
Q Consensus 1 ~~~~~~~~~ 9 (480)
|+.++++.|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 887776554
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.43 E-value=1.1e+02 Score=25.32 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=40.2
Q ss_pred EEEEecCCC----cEEEEEEECCCCceE-EecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 140 TRLGVGTPP----RYVYMVLDTGSDVVW-IQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 140 ~~i~iGTP~----q~~~~ivDTGS~~~W-v~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
++|.|..|. -++.+++|||.+..- ++..--.. - -.++ ....
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~~-----l-gl~~----------------------------~~~~ 47 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVNK-----L-GLPE----------------------------LDQR 47 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHHH-----c-CCCc----------------------------ccCc
Confidence 577888772 368999999998653 33221000 0 0111 0123
Q ss_pred eeeeCCCceeEEEEEEEEEEECCeee
Q 040810 215 QVSYGDGSITVGDFSTETLTFRGTRV 240 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~~~v 240 (480)
.+.-++|....-....+++.+++...
T Consensus 48 ~~~tA~G~~~~~~v~~~~v~igg~~~ 73 (107)
T TIGR03698 48 RVYLADGREVLTDVAKASIIINGLEI 73 (107)
T ss_pred EEEecCCcEEEEEEEEEEEEECCEEE
Confidence 45566776555667788999988765
No 59
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.17 E-value=1.2e+02 Score=30.16 Aligned_cols=16 Identities=31% Similarity=0.435 Sum_probs=14.1
Q ss_pred cEEEcccCcceeeCHH
Q 040810 356 GVIIDSGTSVTRLTRP 371 (480)
Q Consensus 356 ~~iiDSGTt~t~Lp~~ 371 (480)
.++||||++.+++|..
T Consensus 25 ~v~~DTGSs~lWv~~~ 40 (317)
T cd06098 25 TVIFDTGSSNLWVPSS 40 (317)
T ss_pred EEEECCCccceEEecC
Confidence 3899999999999964
Done!