Query 040810
Match_columns 480
No_of_seqs 315 out of 1750
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 7.6E-65 2.6E-69 527.0 32.3 338 120-477 6-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 5.9E-60 2E-64 489.7 34.2 334 122-480 9-395 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 2.8E-58 9.7E-63 471.5 34.8 304 123-478 46-370 (370)
4 1tzs_A Cathepsin E; hydrolase, 100.0 1.9E-57 6.5E-62 462.5 34.1 310 123-480 13-344 (351)
5 2apr_A Rhizopuspepsin; hydrola 100.0 2.4E-57 8.4E-62 457.0 32.8 297 133-478 12-324 (325)
6 3c9x_A Trichoderma reesei aspa 100.0 1.5E-57 5.1E-62 459.3 30.5 299 133-477 12-329 (329)
7 1dpj_A Proteinase A; proteinas 100.0 1.7E-57 5.7E-62 458.9 30.5 304 124-478 4-329 (329)
8 2x0b_A Renin; hydrolase-hormon 100.0 6.2E-58 2.1E-62 470.4 26.8 305 123-478 51-383 (383)
9 1am5_A Pepsin, acid proteinase 100.0 4.3E-57 1.5E-61 454.9 29.1 301 124-478 3-324 (324)
10 1oew_A Endothiapepsin; hydrola 100.0 2.6E-57 9E-62 457.5 27.4 297 134-477 13-329 (329)
11 1mpp_A Pepsin; hydrolase(acid 100.0 8E-57 2.7E-61 459.6 31.2 311 123-480 8-357 (361)
12 3cms_A Chymosin B; hydrolase, 100.0 7.4E-57 2.5E-61 453.1 28.6 300 124-478 5-323 (323)
13 4aa9_A Chymosin; hydrolase, as 100.0 4.1E-57 1.4E-61 454.2 26.5 301 125-478 3-320 (320)
14 2qzx_A Candidapepsin-5; aspart 100.0 1.9E-56 6.7E-61 453.5 30.6 302 123-480 3-333 (342)
15 1htr_B Gastricsin; aspartyl pr 100.0 1.8E-56 6.2E-61 451.3 28.7 303 125-478 5-329 (329)
16 1j71_A Candidapepsin, aspartic 100.0 2.4E-56 8.3E-61 451.4 28.9 298 123-480 3-326 (334)
17 3fv3_A SAPP1P-secreted asparti 100.0 5.2E-56 1.8E-60 449.7 30.1 300 123-480 3-331 (339)
18 1t6e_X Xylanase inhibitor; two 100.0 8.8E-56 3E-60 455.1 31.8 321 123-478 3-373 (381)
19 1miq_A Plasmepsin; aspartic pr 100.0 1.2E-55 4.1E-60 452.9 31.0 301 123-478 52-374 (375)
20 3k1w_A Renin; protease, altern 100.0 4.1E-56 1.4E-60 450.7 26.4 306 122-478 7-340 (341)
21 1qdm_A Prophytepsin; aspartic 100.0 3.7E-55 1.3E-59 461.7 32.2 318 123-478 42-478 (478)
22 1ibq_A Aspergillopepsin; aspar 100.0 3.1E-55 1.1E-59 441.6 30.0 295 134-478 12-325 (325)
23 3pvk_A Candidapepsin-2; hydrol 100.0 1.5E-55 5E-60 446.8 27.7 303 123-480 3-333 (342)
24 2bju_A Plasmepsin II; aspartic 100.0 1.6E-55 5.4E-60 460.3 26.6 302 123-478 128-450 (453)
25 1yg9_A Aspartic protease BLA G 100.0 3.4E-55 1.2E-59 442.2 28.2 304 123-478 7-329 (330)
26 1izd_A Aspartic proteinase; su 100.0 8.9E-55 3E-59 437.9 27.2 293 134-478 13-323 (323)
27 2ewy_A Beta-secretase 2; BACE2 100.0 3.1E-54 1.1E-58 443.8 31.2 310 135-480 12-357 (383)
28 1bxo_A Protein (penicillopepsi 100.0 4.5E-55 1.5E-59 440.1 23.8 293 134-478 13-323 (323)
29 3qvc_A Histo-aspartic protease 100.0 2.2E-54 7.6E-59 452.0 29.4 302 122-478 126-449 (451)
30 2qp8_A Beta-secretase 1; BACE1 100.0 2.9E-54 9.9E-59 445.9 27.4 311 135-480 20-369 (395)
31 3vf3_A Beta-secretase 1; struc 100.0 1.7E-53 5.7E-58 441.2 27.2 312 135-480 27-376 (402)
32 3lpj_A Beta-secretase 1; alzhe 100.0 3.6E-53 1.2E-57 445.3 27.6 312 135-480 73-422 (455)
33 1wkr_A Polyporopepsin; hydrola 100.0 7.7E-53 2.6E-57 426.7 28.7 298 124-480 4-335 (340)
34 1b5f_A Protein (cardosin A); h 100.0 2.8E-42 9.4E-47 332.3 20.8 221 124-382 4-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 1.2E-36 4E-41 293.2 23.3 219 236-478 1-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 1.4E-22 4.7E-27 166.8 9.5 89 124-237 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 4.6E-17 1.6E-21 131.1 8.1 79 400-478 3-87 (87)
38 3s8i_A Protein DDI1 homolog 1; 92.6 0.26 8.8E-06 42.7 6.9 108 324-476 24-134 (148)
39 2i1a_A DNA damage-inducible pr 92.6 0.19 6.4E-06 43.3 6.0 96 135-276 24-121 (148)
40 2i1a_A DNA damage-inducible pr 92.2 0.45 1.5E-05 40.8 8.1 108 323-475 25-134 (148)
41 3s8i_A Protein DDI1 homolog 1; 85.9 1.7 5.9E-05 37.4 6.9 112 135-304 22-135 (148)
42 1fmb_A EIAV protease; hydrolas 84.0 0.96 3.3E-05 36.6 4.0 26 138-165 9-34 (104)
43 2hs1_A HIV-1 protease; ultra-h 83.9 1.2 4.1E-05 35.7 4.5 28 139-168 10-37 (99)
44 3ec0_A Protease; HIV-2, inhibi 79.7 2 6.7E-05 34.4 4.3 27 139-167 10-36 (99)
45 3liy_A Protease; hydrolase, hy 78.3 2 6.9E-05 35.1 4.0 31 139-169 12-45 (116)
46 2hah_A Protease, retropepsin; 74.3 2.7 9.1E-05 34.6 3.8 27 138-167 15-41 (116)
47 3sqf_A Protease; folded monome 67.8 5.1 0.00017 32.8 4.0 29 139-169 11-39 (114)
48 1lya_A Cathepsin D; lysosomal 62.4 9.4 0.00032 30.0 4.6 33 322-371 12-44 (97)
49 3slz_A GAG-Pro-POL polyprotein 54.9 13 0.00044 31.2 4.4 29 137-167 22-50 (132)
50 2rsp_A RSV protease; hydrolase 51.7 13 0.00045 30.8 3.9 24 144-169 27-50 (124)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 51.2 12 0.00041 33.8 3.8 27 138-166 9-35 (203)
52 1bxo_A Protein (penicillopepsi 43.0 23 0.00078 34.0 4.7 40 309-371 5-44 (323)
53 1izd_A Aspartic proteinase; su 41.3 25 0.00087 33.7 4.8 41 309-372 5-45 (323)
54 1mpp_A Pepsin; hydrolase(acid 41.2 30 0.001 33.7 5.4 45 308-371 5-49 (361)
55 1ibq_A Aspergillopepsin; aspar 39.4 25 0.00087 33.7 4.5 32 322-372 13-44 (325)
56 3cms_A Chymosin B; hydrolase, 39.1 30 0.001 33.1 4.9 44 309-371 2-45 (323)
57 3ka2_A [L-Ala51;Gly51']HIV-1 p 32.0 36 0.0012 30.6 3.8 27 138-166 113-139 (203)
58 1b5f_A Protein (cardosin A); h 31.0 41 0.0014 30.7 4.2 33 322-371 12-44 (239)
59 3aup_A SBG7S, BG, basic 7S glo 30.2 47 0.0016 32.9 4.8 42 312-371 11-52 (403)
60 1oew_A Endothiapepsin; hydrola 27.9 54 0.0019 31.4 4.7 33 322-371 14-46 (329)
61 1j71_A Candidapepsin, aspartic 27.2 60 0.0021 31.1 4.8 39 313-371 5-43 (334)
62 3fv3_A SAPP1P-secreted asparti 26.9 61 0.0021 31.0 4.8 40 312-371 4-43 (339)
63 2qzx_A Candidapepsin-5; aspart 26.8 67 0.0023 30.8 5.1 33 322-371 11-43 (342)
64 3c9x_A Trichoderma reesei aspa 26.7 59 0.002 31.1 4.7 33 322-371 14-46 (329)
65 1wkr_A Polyporopepsin; hydrola 26.6 58 0.002 31.3 4.6 38 313-370 5-42 (340)
66 3vla_A EDGP; extracellular, in 26.5 57 0.002 32.5 4.6 44 309-370 7-50 (413)
67 2apr_A Rhizopuspepsin; hydrola 25.8 66 0.0022 30.7 4.8 33 322-371 14-46 (325)
68 1am5_A Pepsin, acid proteinase 24.9 72 0.0025 30.3 4.9 33 322-371 11-43 (324)
69 3pvk_A Candidapepsin-2; hydrol 23.7 66 0.0023 30.8 4.4 33 322-371 11-43 (342)
70 3psg_A Pepsinogen; hydrolase(a 22.9 43 0.0015 32.8 2.9 42 310-370 45-86 (370)
71 1dpj_A Proteinase A; proteinas 22.8 80 0.0027 30.1 4.7 15 357-371 30-44 (329)
72 3k1w_A Renin; protease, altern 22.0 86 0.003 29.9 4.8 43 310-371 7-49 (341)
73 4aa9_A Chymosin; hydrolase, as 21.5 64 0.0022 30.6 3.8 33 322-371 10-42 (320)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=7.6e-65 Score=526.98 Aligned_cols=338 Identities=26% Similarity=0.479 Sum_probs=289.5
Q ss_pred CCCceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccC
Q 040810 120 NGGFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCR 199 (480)
Q Consensus 120 ~~~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~ 199 (480)
...+..||..+. .+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|.
T Consensus 6 ~~~~~~pv~~d~--~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~ 70 (413)
T 3vla_A 6 PSALVVPVKKDA--STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCS 70 (413)
T ss_dssp CSEEEEEEEECT--TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHH
T ss_pred CccEEEEeeecC--CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCccccc
Confidence 456889998875 479999999999999999999999999999999876 37999999999999998
Q ss_pred CCCCCC-----------CCCCCCceeeeee-CCCceeEEEEEEEEEEEC---------CeeeeeEEEEEEecC--CCCcc
Q 040810 200 KLDSSG-----------CNRRNTCLYQVSY-GDGSITVGDFSTETLTFR---------GTRVARVALGCGHDN--EGLFV 256 (480)
Q Consensus 200 ~~~~~~-----------C~~~~~~~y~~~Y-gdgs~~~G~~~~Dtvt~g---------~~~v~~~~fG~~~~~--~~~~~ 256 (480)
...... |. ++.|.|.+.| +||+.+.|.+++|+|+|+ +..++++.|||++.+ .+.+.
T Consensus 71 ~~~~~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~ 149 (413)
T 3vla_A 71 LSGSIACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLAS 149 (413)
T ss_dssp HTTCCEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCT
T ss_pred ccccCCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccc
Confidence 765433 33 3469999999 488888899999999996 268899999999985 45557
Q ss_pred CCceEeecCCCCCChHHHhhhc--CCCcEEEEeccCCCCCCCcEEEeccCCC--------CCC-eEEEecccCCCC----
Q 040810 257 AAAGLLGLGRGRLSFPTQTGRR--FNRKFSYCLVDRSTSAKPSSMVFGDSAV--------SRT-ARFTPLLANPKL---- 321 (480)
Q Consensus 257 ~~~GIlGLG~~~~Sl~~ql~~~--~~~~FS~~L~~~~~~~~~g~L~fG~~d~--------~g~-~~~tpl~~~~~~---- 321 (480)
.++||||||++++|+++||..+ ..++|||||.+.... .|.|+||+.+. .++ +.|+||+.++..
T Consensus 150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~--~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~ 227 (413)
T 3vla_A 150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSS--NSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227 (413)
T ss_dssp TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSS--CEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSS
T ss_pred ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCC--ceEEEECCCcccccccccccCCceeEeecccCCcccccc
Confidence 7899999999999999999876 469999999985322 79999999872 467 999999987532
Q ss_pred ------CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhc--cCCcCCCC
Q 040810 322 ------DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGAS--SLKRAPDF 393 (480)
Q Consensus 322 ------~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~--~~~~~~~~ 393 (480)
..||+|+|++|+||++.+. +++..|..+.++++++||||||++++||+++|++|+++|.+++. +++..++.
T Consensus 228 ~~~~~~~~~y~V~l~~IsVgg~~l~-~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~ 306 (413)
T 3vla_A 228 STQGEPSVEYFIGVKSIKINSKIVA-LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV 306 (413)
T ss_dssp CCTTCCCCSCEECCCEEEETTEEEC-CCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCC
T ss_pred ccccCCCceEEEEEEEEEECCEEcc-CCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCC
Confidence 2799999999999999998 99999988777788999999999999999999999999998764 34444444
Q ss_pred CccccccccCCCcc----cccceEEEEEcC--eEEEECCCCcEEEecCCCcEEEEEEecC---CCceeecHhhhcceEEE
Q 040810 394 SLFDTCFDLSGKTE----VKVPTVVLHFRG--ADVSLPATNYLIPVDSSGTFCFAFAGTM---SGLSIIGNIQQQGFRVV 464 (480)
Q Consensus 394 ~~~~~Cy~~~~~~~----~~~P~lt~~F~G--~~~~l~~~~yl~~~~~~g~~Cl~~~~~~---~~~~IlG~~fl~~~yvv 464 (480)
..++.||++++... ..+|+|+|+|+| ++++|++++|+++.+. +..|++|...+ .+.||||++|||++|+|
T Consensus 307 ~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~-~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vv 385 (413)
T 3vla_A 307 APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-NVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQ 385 (413)
T ss_dssp TTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEET-TEEEECEEEEESSCSSSEEECHHHHTTEEEE
T ss_pred CCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCC-CcEEEEEEecCCCcccceeEehhhhcCeEEE
Confidence 45778999876542 579999999997 8999999999998763 78999988763 25799999999999999
Q ss_pred EECCCCEEEEeeC
Q 040810 465 YDLAASRIGFAPR 477 (480)
Q Consensus 465 fD~~~~rIGFa~~ 477 (480)
||++++|||||++
T Consensus 386 fD~~~~riGfa~~ 398 (413)
T 3vla_A 386 FDLATSRVGFSGT 398 (413)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCCEEEEEEe
Confidence 9999999999985
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=5.9e-60 Score=489.66 Aligned_cols=334 Identities=23% Similarity=0.419 Sum_probs=268.9
Q ss_pred CceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCC
Q 040810 122 GFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKL 201 (480)
Q Consensus 122 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 201 (480)
.+..|+.... .+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|...
T Consensus 9 ~~~~pl~~~~--~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~~ 73 (403)
T 3aup_A 9 LVVLPVQNDG--STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSRA 73 (403)
T ss_dssp CEEEEEEECT--TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHHT
T ss_pred cEEEeeecCC--CCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccCc
Confidence 4678887432 478999999999999999999999999999999875 3799999999999999876
Q ss_pred CCC-----------CCCCCCCceeeeeeC-CCceeEEEEEEEEEEECC-----------eeeeeEEEEEEecCC---CCc
Q 040810 202 DSS-----------GCNRRNTCLYQVSYG-DGSITVGDFSTETLTFRG-----------TRVARVALGCGHDNE---GLF 255 (480)
Q Consensus 202 ~~~-----------~C~~~~~~~y~~~Yg-dgs~~~G~~~~Dtvt~g~-----------~~v~~~~fG~~~~~~---~~~ 255 (480)
... .|.. +.|.|.+.|+ ||+.+.|.+++|+|+|++ ..++++.|||++... +.+
T Consensus 74 ~~~~c~~c~~~~~s~~~~-~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~ 152 (403)
T 3aup_A 74 NTHQCLSCPAASRPGCHK-NTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLP 152 (403)
T ss_dssp TCCCEEECSSSCBTTBCS-SEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSS
T ss_pred cccCccccCCCCCCCCCC-CcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCC
Confidence 433 3433 4799999998 788888999999999987 789999999999863 334
Q ss_pred cCCceEeecCCCCCChHHHhhhc--CCCcEEEEeccCCCCCCCcEEEeccCC---C--C-C-----CeEEEecccCCCCC
Q 040810 256 VAAAGLLGLGRGRLSFPTQTGRR--FNRKFSYCLVDRSTSAKPSSMVFGDSA---V--S-R-----TARFTPLLANPKLD 322 (480)
Q Consensus 256 ~~~~GIlGLG~~~~Sl~~ql~~~--~~~~FS~~L~~~~~~~~~g~L~fG~~d---~--~-g-----~~~~tpl~~~~~~~ 322 (480)
..++||||||++.+|++.|+++. ..++||+||.+.... .|.|+||+ | + . | ++.|+||+.++ .
T Consensus 153 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~--~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~--~ 227 (403)
T 3aup_A 153 RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTS--KGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL--Q 227 (403)
T ss_dssp TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTS--CEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--T
T ss_pred CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCC--CeeEEECC-CchhccccccccccCceeecccccCC--C
Confidence 67899999999999999999765 568999999875333 79999999 7 4 3 5 99999999864 3
Q ss_pred eeEEEEEeeEEECCeee-cceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccc
Q 040810 323 TFYYVELVGISVGGAHV-RGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFD 401 (480)
Q Consensus 323 ~~y~v~l~gisVgg~~~-~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~ 401 (480)
.+|+|.|++|+||++.+ . ++...+.++..+++++||||||++++||+++|++|+++|.+++..++.......++.||+
T Consensus 228 ~~y~v~l~~i~v~g~~~~~-~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~ 306 (403)
T 3aup_A 228 GEYNVRVNSIRINQHSVFP-LNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFN 306 (403)
T ss_dssp SCEEECEEEEEETTEEEEC-C------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEEC
T ss_pred CcceEEEEEEEECCEEccc-CChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEE
Confidence 69999999999999998 7 787777777677889999999999999999999999999876543333322223456874
Q ss_pred cCCCcccccceEEEEEcC---eEEEECCCCcEEEecCCCcEEEEEEecC---CCceeecHhhhcceEEEEECCCCEEEE-
Q 040810 402 LSGKTEVKVPTVVLHFRG---ADVSLPATNYLIPVDSSGTFCFAFAGTM---SGLSIIGNIQQQGFRVVYDLAASRIGF- 474 (480)
Q Consensus 402 ~~~~~~~~~P~lt~~F~G---~~~~l~~~~yl~~~~~~g~~Cl~~~~~~---~~~~IlG~~fl~~~yvvfD~~~~rIGF- 474 (480)
|.....+|+|+|+|+| ++++||+++|+++.. ++..|++|++.+ .+.||||+.|||++|+|||++++||||
T Consensus 307 --c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~-~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~ 383 (403)
T 3aup_A 307 --SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQ-PGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFS 383 (403)
T ss_dssp --GGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC----CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEE
T ss_pred --CCCcCcCCcEEEEEcCCCceEEEEcccceEEEcC-CCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEe
Confidence 5544579999999996 599999999999865 367899998764 257999999999999999999999999
Q ss_pred ------eeCCCC
Q 040810 475 ------APRGCA 480 (480)
Q Consensus 475 ------a~~~C~ 480 (480)
++++|+
T Consensus 384 A~~~~~~~~~C~ 395 (403)
T 3aup_A 384 TSSLHSHGVKCA 395 (403)
T ss_dssp SSCGGGGTCCGG
T ss_pred cccccccCCCcc
Confidence 777774
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=2.8e-58 Score=471.54 Aligned_cols=304 Identities=22% Similarity=0.418 Sum_probs=258.1
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLD 202 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 202 (480)
...|+.+. .+.+|+++|+||||||++.|++||||+++||+|..|..|.|+.++.|||++|+||+..
T Consensus 46 ~~~~l~n~---~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~----------- 111 (370)
T 3psg_A 46 GDEPLENY---LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----------- 111 (370)
T ss_dssp CCCTTGGG---TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE-----------
T ss_pred ceecceec---cCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEEC-----------
Confidence 45677654 3789999999999999999999999999999999999888888999999999999987
Q ss_pred CCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHH
Q 040810 203 SSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPT 273 (480)
Q Consensus 203 ~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ 273 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ..++||||||++.++ +..
T Consensus 112 --------~~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~ 182 (370)
T 3psg_A 112 --------SQELSITYGTGSM-TGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD 182 (370)
T ss_dssp --------EEEEEEESSSCEE-EEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHH
T ss_pred --------CcEEEEEeCCceE-EEEEEEEEEeeCCcccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHHH
Confidence 5899999999995 599999999999999999999999988663 3 468999999998765 556
Q ss_pred Hhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecccc
Q 040810 274 QTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLF 347 (480)
Q Consensus 274 ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~ 347 (480)
+|.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+. .
T Consensus 183 ~l~~qg~i~~~~FS~~L~~~~~~--~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~-~----- 250 (370)
T 3psg_A 183 NLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIA-C----- 250 (370)
T ss_dssp HHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEE-C-----
T ss_pred HHHHCCCCCCCEEEEEEccCCCC--CeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECCEEEe-c-----
Confidence 67665 579999999986333 7999999999 679999999986 4799999999999998764 2
Q ss_pred ccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCC
Q 040810 348 KLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPAT 427 (480)
Q Consensus 348 ~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~ 427 (480)
.+...+||||||+++++|++++++|.+++.+.. ...+ +|.++|.....+|+|+|+|+|++++||++
T Consensus 251 ----~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~----~~~g------~~~v~C~~~~~lP~i~f~~~g~~~~l~~~ 316 (370)
T 3psg_A 251 ----SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE----NSDG------EMVISCSSIDSLPDIVFTIDGVQYPLSPS 316 (370)
T ss_dssp ----TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE----CTTC------CEECCGGGGGGCCCEEEEETTEEEEECHH
T ss_pred ----CCCceEEEcCCCCcEECCHHHHHHHHHHhCCcc----cCCC------cEEEECCCcccCCcEEEEECCEEEEECHH
Confidence 234679999999999999999999999986542 1112 46677777778999999999999999999
Q ss_pred CcEEEecCCCcEEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 428 NYLIPVDSSGTFCF-AFAGTM-----SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 428 ~yl~~~~~~g~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+|+++ . +..|+ +|.+.+ +..||||++|||++|+|||++++|||||+++
T Consensus 317 ~yi~~-~--~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 317 AYILQ-D--DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp HHEEE-C--SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred Hhccc-C--CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 99998 3 34598 677642 2369999999999999999999999999974
No 4
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-57 Score=462.52 Aligned_cols=310 Identities=24% Similarity=0.408 Sum_probs=255.2
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLD 202 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 202 (480)
...|+.+. .+++|+++|.||||+|++.|++||||+++||+|.+|..+.|..++.|||++|+||+..
T Consensus 13 ~~~~l~n~---~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~----------- 78 (351)
T 1tzs_A 13 AKEPLINY---LDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQP----------- 78 (351)
T ss_dssp -CCTTGGG---SSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCC-----------
T ss_pred cceeceec---CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEEC-----------
Confidence 34677642 4689999999999999999999999999999999998434456799999999999886
Q ss_pred CCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHH
Q 040810 203 SSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPT 273 (480)
Q Consensus 203 ~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ 273 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++ +..
T Consensus 79 --------~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 149 (351)
T 1tzs_A 79 --------GQSFSIQYGTGSL-SGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFD 149 (351)
T ss_dssp --------SCEEEEESSSCEE-EEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHH
T ss_pred --------CCEEEEEeCCCCe-EEEEEEeEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHH
Confidence 6999999999985 599999999999999999999999987663 2 467999999998765 566
Q ss_pred Hhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecccc
Q 040810 274 QTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLF 347 (480)
Q Consensus 274 ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~ 347 (480)
+|.++ ..++||+||.+.......|.|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+. .
T Consensus 150 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~----- 219 (351)
T 1tzs_A 150 NMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDNIQVGGTVMF-C----- 219 (351)
T ss_dssp HHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEEEEETTEEEE-C-----
T ss_pred HHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCEEEECCceEE-c-----
Confidence 77665 479999999886433237999999999 579999999986 4699999999999998753 1
Q ss_pred ccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCC
Q 040810 348 KLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPAT 427 (480)
Q Consensus 348 ~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~ 427 (480)
.....+||||||++++||+++|++|.+++.+... . +. |.++|.....+|+|+|+|+|++++||++
T Consensus 220 ----~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~-g~------~~~~C~~~~~~P~i~f~f~g~~~~i~~~ 284 (351)
T 1tzs_A 220 ----SEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV----D-GE------YAVECANLNVMPDVTFTINGVPYTLSPT 284 (351)
T ss_dssp ----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----S-SS------EEECGGGGGGSCCEEEEETTEEEEECTT
T ss_pred ----CCCceEEeccCCcceeCCHHHHHHHHHHhCCccc----C-Ce------EEEeCCCCccCCcEEEEECCEEEEECHH
Confidence 2345799999999999999999999999965421 1 21 3334444467999999999999999999
Q ss_pred CcEEEecCC-CcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 428 NYLIPVDSS-GTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 428 ~yl~~~~~~-g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+|+++.... +..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++|.
T Consensus 285 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 285 AYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp TSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred HhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 999876532 36898 68765 2457999999999999999999999999999984
No 5
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=2.4e-57 Score=456.98 Aligned_cols=297 Identities=21% Similarity=0.357 Sum_probs=252.2
Q ss_pred CCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCc
Q 040810 133 QGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTC 212 (480)
Q Consensus 133 ~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 212 (480)
..+++|+++|.||||+|++.|++||||+++||+|.+|..| ++.++.|||++|+||+.. .|
T Consensus 12 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~~-------------------~~ 71 (325)
T 2apr_A 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQAD-------------------GR 71 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEEE-------------------EE
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeeeC-------------------CC
Confidence 3578999999999999999999999999999999999999 888999999999999985 69
Q ss_pred eeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc--cCCceEeecCCCCCC-------hHHHhhhc---CC
Q 040810 213 LYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF--VAAAGLLGLGRGRLS-------FPTQTGRR---FN 280 (480)
Q Consensus 213 ~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~--~~~~GIlGLG~~~~S-------l~~ql~~~---~~ 280 (480)
.|.+.|++|+...|.+++|+|+|++..++++.|||++...+.| ...+||||||++.++ ++.||.++ ..
T Consensus 72 ~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~ 151 (325)
T 2apr_A 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151 (325)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSS
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCEEECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCC
Confidence 9999999999777999999999999999999999999876555 348999999998764 56777765 47
Q ss_pred CcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 281 RKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 281 ~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
++||+||.+..... .|.|+||++| +.|++.|+|+... ..+|.|.|++|+||+ .+. . ....+
T Consensus 152 ~~FS~~l~~~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~vg~-~~~---~--------~~~~~ 215 (325)
T 2apr_A 152 PIFGVYLGKAKNGG-GGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGT-STV---A--------SSFDG 215 (325)
T ss_dssp SEEEEEECCGGGTC-CEEEEETCCCGGGBCSCCEEEECBCT---TSSCEEEECEEEETT-EEE---E--------CCEEE
T ss_pred ceEEEEecCCCCCC-CCEEEEccCCchhccCceEEEEccCC---CCEEEEEEeEEEECC-Eec---C--------CCceE
Confidence 89999996542222 7999999998 6789999999753 569999999999999 332 1 23579
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCC
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSG 437 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g 437 (480)
||||||++++||+++|++|.+++.+.+... +. |.++|.. ..+|+|+|+|+|.+++||+++|+++.. +
T Consensus 216 iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~----g~------~~~~C~~-~~~p~i~f~f~g~~~~ip~~~~~~~~~--~ 282 (325)
T 2apr_A 216 ILDTGTTLLILPNNIAASVARAYGASDNGD----GT------YTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEF--Q 282 (325)
T ss_dssp EECTTCSSEEEEHHHHHHHHHHHTCEECSS----SC------EEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEE--T
T ss_pred EEecCCccEECCHHHHHHHHHHHhcccCCC----Ce------EEEECCC-CCCCcEEEEECCEEEEECHHHEEEcCC--C
Confidence 999999999999999999999997654321 21 3345543 358999999998899999999998765 6
Q ss_pred cEEEE-EEecCCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 438 TFCFA-FAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 438 ~~Cl~-~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
..|++ |.+.+.+.||||++|||++|+|||++++|||||+++
T Consensus 283 ~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 283 GQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp TEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 78985 565556689999999999999999999999999874
No 6
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.5e-57 Score=459.33 Aligned_cols=299 Identities=22% Similarity=0.380 Sum_probs=252.2
Q ss_pred CCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCc
Q 040810 133 QGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTC 212 (480)
Q Consensus 133 ~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 212 (480)
..+++|+++|.||||+|++.|++||||+++||+|.+|..|.++.++.|||++|+||+.++ .|
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~------------------~~ 73 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS------------------GA 73 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT------------------TC
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC------------------CC
Confidence 357899999999999999999999999999999999999988889999999999999875 58
Q ss_pred eeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeecCCCCCC---------hHHHhhhc-C
Q 040810 213 LYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGLGRGRLS---------FPTQTGRR-F 279 (480)
Q Consensus 213 ~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S---------l~~ql~~~-~ 279 (480)
.|.+.|++|+...|.+++|+|+|++..++++.|||++...+.+ ...+||||||++.++ +..+|.++ .
T Consensus 74 ~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~ 153 (329)
T 3c9x_A 74 SWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASSLA 153 (329)
T ss_dssp BEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTTSS
T ss_pred eEEEEeCCCCcEEEEEEEEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHhcC
Confidence 9999999999777999999999999999999999999876544 468999999998665 45566655 4
Q ss_pred CCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCc
Q 040810 280 NRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGG 356 (480)
Q Consensus 280 ~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~ 356 (480)
.++||+||.+. . .|.|+||++| +.|++.|+|+..+ ..||.|.|++|+||++.+. .....
T Consensus 154 ~~~FS~~l~~~--~--~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~-----------~~~~~ 215 (329)
T 3c9x_A 154 EPLFTADLRHG--Q--NGSYNFGYIDTSVAKGPVAYTPVDNS---QGFWEFTASGYSVGGGKLN-----------RNSID 215 (329)
T ss_dssp SSEEEEECCSS--S--CEEEEESSCCGGGCSSCEEEEECBCT---TSSCEEEECCEEETTCCCC-----------SCCEE
T ss_pred CCEEEEEecCC--C--CcEEEEeCcChhhcccceEEEEccCC---CceEEEEEeeEEECCEecc-----------CCCce
Confidence 78999999763 2 7999999998 6799999999853 5699999999999998654 12457
Q ss_pred EEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-
Q 040810 357 VIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS- 435 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~- 435 (480)
+||||||++++||+++|++|.+++.++.. ....+. |.++|. ..+|+|+|+|+|++++||+++|+++...
T Consensus 216 aiiDSGTt~~~lp~~~~~~i~~~i~~a~~--~~~~~~------~~~~C~--~~~P~i~f~f~g~~~~ip~~~~~~~~~~~ 285 (329)
T 3c9x_A 216 GIADTGTTLLLLDDNVVDAYYANVQSAQY--DNQQEG------VVFDCD--EDLPSFSFGVGSSTITIPGDLLNLTPLEE 285 (329)
T ss_dssp EEECTTCCSEEECHHHHHHHHTTCTTCEE--ETTTTE------EEEETT--CCCCCEEEEETTEEEEECGGGGEEEESST
T ss_pred EEEECCCCcEeCCHHHHHHHHHhCCCcEE--cCCCCE------EEEECC--CCCCcEEEEECCEEEEECHHHeeeeccCC
Confidence 99999999999999999999988744321 111121 233444 3689999999999999999999987643
Q ss_pred CCcEEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeC
Q 040810 436 SGTFCFA-FAGTM-SGLSIIGNIQQQGFRVVYDLAASRIGFAPR 477 (480)
Q Consensus 436 ~g~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~ 477 (480)
+...|++ |.+.+ .+.||||++|||++|+|||++++|||||+.
T Consensus 286 ~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 286 GSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp TCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 2478985 77653 468999999999999999999999999984
No 7
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=1.7e-57 Score=458.89 Aligned_cols=304 Identities=23% Similarity=0.437 Sum_probs=256.8
Q ss_pred eecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCC
Q 040810 124 SSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDS 203 (480)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~ 203 (480)
++|+.+. .+++|+++|.||||+|++.|++||||+++||+|.+|..|.|..++.|||++|+||+..
T Consensus 4 ~~~l~~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------ 68 (329)
T 1dpj_A 4 DVPLTNY---LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKAN------------ 68 (329)
T ss_dssp EEECEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEE------------
T ss_pred ceeeeec---CCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEEC------------
Confidence 4677653 3689999999999999999999999999999999999744456789999999999886
Q ss_pred CCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCC-Cc--cCCceEeecCCCCCCh------HHH
Q 040810 204 SGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEG-LF--VAAAGLLGLGRGRLSF------PTQ 274 (480)
Q Consensus 204 ~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~-~~--~~~~GIlGLG~~~~Sl------~~q 274 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+ .| ...+||||||++.+++ ..+
T Consensus 69 -------~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~ 140 (329)
T 1dpj_A 69 -------GTEFAIQYGTGSL-EGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYN 140 (329)
T ss_dssp -------EEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHH
T ss_pred -------CcEEEEEECCceE-EEEEEEEEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHH
Confidence 6999999999965 59999999999999999999999998765 23 4689999999988764 345
Q ss_pred hhhc---CCCcEEEEeccCCC-CCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecccc
Q 040810 275 TGRR---FNRKFSYCLVDRST-SAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLF 347 (480)
Q Consensus 275 l~~~---~~~~FS~~L~~~~~-~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~ 347 (480)
|.++ ..++||+||.+... ....|.|+||++| +.|++.|+|+.. +.||.|.|++|+||++.+. .
T Consensus 141 l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~----- 210 (329)
T 1dpj_A 141 AIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIGLGDEYAE-L----- 210 (329)
T ss_dssp HHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEEE-C-----
T ss_pred HHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEeeeEEECCeEec-C-----
Confidence 6554 47899999986532 1126999999999 568999999985 5699999999999998775 2
Q ss_pred ccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCC
Q 040810 348 KLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPAT 427 (480)
Q Consensus 348 ~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~ 427 (480)
.+..+||||||++++||+++|++|.+++.+. .. .+.||.++|.....+|+|+|+|+|++++||++
T Consensus 211 -----~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~------~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~ 275 (329)
T 1dpj_A 211 -----ESHGAAIDTGTSLITLPSGLAEMINAEIGAK----KG------WTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPY 275 (329)
T ss_dssp -----SSCEEEECTTCSCEEECHHHHHHHHHHHTCE----EC------TTSSEEECGGGGGGCCCEEEEETTEEEEECTT
T ss_pred -----CCccEEeeCCCCcEECCHHHHHHHHHHhCCc----cC------CCCeEEEECCCCCcCCcEEEEECCEEEEECHH
Confidence 3467999999999999999999999998653 11 12367777877778999999999999999999
Q ss_pred CcEEEecCCCcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 428 NYLIPVDSSGTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 428 ~yl~~~~~~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+|+++.. ..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 276 ~y~~~~~---~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 276 DYTLEVS---GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp TSEEEET---TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HhEecCC---CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 9999864 5798 78764 24579999999999999999999999999975
No 8
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=6.2e-58 Score=470.44 Aligned_cols=305 Identities=22% Similarity=0.369 Sum_probs=254.8
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC----CCCCCCCCCCCCCCCCCccccCCCCccc
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK----KCYSQTDPVFDPAKSRSFATVPCRSPLC 198 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~C 198 (480)
...|+.+. .+.+|+++|+||||||+|.|+|||||+++||+|..|. .|. .++.|||++|+||+..
T Consensus 51 ~~~~l~n~---~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~--~~~~y~~~~SsT~~~~------- 118 (383)
T 2x0b_A 51 SSVILTNY---MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV--YHKLFDASDSSSYKHN------- 118 (383)
T ss_dssp CEEEEEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHH--TSCCBCGGGCTTCEEE-------
T ss_pred ceEeeeec---CCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCccccc--CCCCCCCCCCCcEEEC-------
Confidence 34677653 3689999999999999999999999999999999996 575 4689999999999987
Q ss_pred CCCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC-----
Q 040810 199 RKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS----- 270 (480)
Q Consensus 199 ~~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S----- 270 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++ +.|||++...+. | ..++||||||++.++
T Consensus 119 ------------~~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~ 184 (383)
T 2x0b_A 119 ------------GTELTLRYSTGTV-SGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 184 (383)
T ss_dssp ------------EEEEEEECSSCEE-EEEEEEEEEEETTEEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCC
T ss_pred ------------CcEEEEEcCCccE-EEEEEeeEEEEcCceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCC
Confidence 6999999999995 59999999999999999 999999987653 2 568999999998875
Q ss_pred -hHHHhhhc---CCCcEEEEeccCCCCC--CCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecc
Q 040810 271 -FPTQTGRR---FNRKFSYCLVDRSTSA--KPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRG 341 (480)
Q Consensus 271 -l~~ql~~~---~~~~FS~~L~~~~~~~--~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~ 341 (480)
+..+|.++ ..++||+||.+..... ..|+|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+.
T Consensus 185 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v~l~~i~v~~~~~~- 259 (383)
T 2x0b_A 185 PIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSVGSSTLL- 259 (383)
T ss_dssp CHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEEEECEEEESSCCCB-
T ss_pred cHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEEEEeEEEeCCceEE-
Confidence 45566665 4799999998764321 27999999999 568999999986 5799999999999998643
Q ss_pred eeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeE
Q 040810 342 ITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGAD 421 (480)
Q Consensus 342 i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~ 421 (480)
. .....+||||||+++++|+++|++|.+++.+.. ..+. |.++|.....+|+|+|+|+|++
T Consensus 260 ~---------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~g~------~~v~C~~~~~~P~i~f~~~g~~ 319 (383)
T 2x0b_A 260 C---------EDGCLALVDTGASYISGSTSSIEKLMEALGAKK-----RLFD------YVVKCNEGPTLPDISFHLGGKE 319 (383)
T ss_dssp S---------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSSC------EEEEGGGTTTCCCEEEEETTEE
T ss_pred c---------CCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-----cCCc------EEEeccccccCceEEEEECCEE
Confidence 1 234679999999999999999999999997542 2232 2233444457999999999999
Q ss_pred EEECCCCcEEEecCC-CcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 422 VSLPATNYLIPVDSS-GTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 422 ~~l~~~~yl~~~~~~-g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
++||+++|+++.... +..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 320 ~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 320 YTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 999999999876532 46898 78765 24589999999999999999999999999874
No 9
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=4.3e-57 Score=454.93 Aligned_cols=301 Identities=22% Similarity=0.434 Sum_probs=255.0
Q ss_pred eecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCC
Q 040810 124 SSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDS 203 (480)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~ 203 (480)
..|+.+. .+++|+++|.||||||++.|++||||+++||+|.+|..+.|..++.|||++|+||+..
T Consensus 3 ~~~l~n~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------ 67 (324)
T 1am5_A 3 TEQMKNE---ADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVET------------ 67 (324)
T ss_dssp EEEEEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEE------------
T ss_pred eeeeecC---CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeC------------
Confidence 4566653 3689999999999999999999999999999999998533345789999999999987
Q ss_pred CCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHH
Q 040810 204 SGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQ 274 (480)
Q Consensus 204 ~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~q 274 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++ ++.+
T Consensus 68 -------~~~~~i~Yg~Gs~-~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 139 (324)
T 1am5_A 68 -------GKTVDLTYGTGGM-RGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDN 139 (324)
T ss_dssp -------EEEEEEECSSCEE-EEEEEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHH
T ss_pred -------CcEEEEEECCCCe-EEEEEECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHh
Confidence 5899999999988 599999999999999999999999987653 3 468999999998765 5667
Q ss_pred hhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccc
Q 040810 275 TGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFK 348 (480)
Q Consensus 275 l~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~ 348 (480)
|.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+. .
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~------ 206 (324)
T 1am5_A 140 MGSQSLVEKDLFSFYLSGGGAN--GSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTAA-C------ 206 (324)
T ss_dssp HHHTTCSSSSEEEEECCSTTCS--CEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTEECC-C------
T ss_pred HHhcCCCCCCEEEEEecCCCCC--CcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCceee-c------
Confidence 7765 479999999886433 7999999999 578999999986 4699999999999998753 1
Q ss_pred cCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCC
Q 040810 349 LDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATN 428 (480)
Q Consensus 349 ~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~ 428 (480)
.+ ..+||||||++++||+++|++|.+++.+. . ..+ .|.++|.....+|+|+|+|+|++++||+++
T Consensus 207 ---~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g------~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~ 271 (324)
T 1am5_A 207 ---EG-CQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQG------EMMGNCASVQSLPDITFTINGVKQPLPPSA 271 (324)
T ss_dssp ---CC-EEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCC------CEECCTTSSSSSCCEEEEETTEEEEECHHH
T ss_pred ---cC-ceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCC------cEEEeCCCcccCCcEEEEECCEEEEECHHH
Confidence 12 67999999999999999999999999654 1 122 134455555689999999999999999999
Q ss_pred cEEEecCCCcEEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 429 YLIPVDSSGTFCF-AFAGTM-----SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 429 yl~~~~~~g~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
|+++. +..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 272 y~~~~---~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 272 YIEGD---QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp HEEES---SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred hcccC---CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 99976 46798 787652 4579999999999999999999999999975
No 10
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=2.6e-57 Score=457.51 Aligned_cols=297 Identities=22% Similarity=0.355 Sum_probs=249.4
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCce
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCL 213 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 213 (480)
.+++|+++|.||||+|++.|++||||+++||+|.+|..|.+ .++.|||++|+||+.++ .|.
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~------------------~~~ 73 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLS------------------GAT 73 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEE------------------EEE
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecC------------------CCe
Confidence 47899999999999999999999999999999999999987 78999999999999875 589
Q ss_pred eeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeecCCCCCC---------hHHHhhhc-CC
Q 040810 214 YQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGLGRGRLS---------FPTQTGRR-FN 280 (480)
Q Consensus 214 y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S---------l~~ql~~~-~~ 280 (480)
|.+.|++|+.+.|.+++|+|+|++..++++.|||++...+.+ ...+||||||++.++ +..+|.++ ..
T Consensus 74 ~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~ 153 (329)
T 1oew_A 74 WSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDS 153 (329)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTTSSS
T ss_pred EEEEeCCCCcEEEEEEEEEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHhccC
Confidence 999999999777999999999999999999999999876554 468999999998765 45667665 47
Q ss_pred CcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 281 RKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 281 ~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
++||+||.+. . .|.|+||++| +.|++.|+|+..+ ..||.|.|++|+||++.+. . ....+
T Consensus 154 ~~FS~~L~~~--~--~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~-~----------~~~~a 215 (329)
T 1oew_A 154 PVFTADLGYH--A--PGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGTFK-S----------TSIDG 215 (329)
T ss_dssp SEEEEECCSS--S--CEEEEESCCCTTSSSSCCEEEECBCT---TSSCEEEEEEEEETTSCCE-E----------EEEEE
T ss_pred cEEEEEccCC--C--CeEEEEeccChHhcccceEEEEccCC---CceEEEEEeeEEECCeecc-C----------CCceE
Confidence 8999999863 2 7999999998 5789999999853 5799999999999998654 1 12479
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-C
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS-S 436 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~-~ 436 (480)
||||||++++||+++|++|++++.++.. ....+. |.++|. ..+|+|+|+|+|++++||+++|+++... .
T Consensus 216 iiDSGTt~~~lP~~~~~~l~~~i~~a~~--~~~~g~------~~~~C~--~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~ 285 (329)
T 1oew_A 216 IADTGTTLLYLPATVVSAYWAQVSGAKS--SSSVGG------YVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTG 285 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCEE--ETTTTE------EEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTT
T ss_pred EEeCCCCCEECCHHHHHHHHHhCCCcEE--cCCCCE------EEEECC--CCCCcEEEEECCEEEEECHHHeeeeecCCC
Confidence 9999999999999999999988744321 111121 233444 3689999999999999999999987643 3
Q ss_pred CcEEEE-EEecC-CCceeecHhhhcceEEEEEC-CCCEEEEeeC
Q 040810 437 GTFCFA-FAGTM-SGLSIIGNIQQQGFRVVYDL-AASRIGFAPR 477 (480)
Q Consensus 437 g~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~-~~~rIGFa~~ 477 (480)
...|++ |.+.+ .+.||||++|||++|+|||+ +++|||||+.
T Consensus 286 ~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 286 SSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp CSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred CCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 478985 66653 46899999999999999999 9999999984
No 11
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=8e-57 Score=459.61 Aligned_cols=311 Identities=23% Similarity=0.365 Sum_probs=259.3
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC---CCCCCCCCCCCCCCCCCccccCCCCcccC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK---KCYSQTDPVFDPAKSRSFATVPCRSPLCR 199 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~ 199 (480)
...|+.+. .+++|+++|.||||+|++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 8 ~~~~l~~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~-------- 74 (361)
T 1mpp_A 8 DTPGLYDF---DLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCV--GKRFFDPSSSSTFKET-------- 74 (361)
T ss_dssp EEEEEEET---TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCC--SSCCBCGGGCTTCEEE--------
T ss_pred ceEEeecC---CCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCC--CCCcCCCccCCceEec--------
Confidence 44677642 4689999999999999999999999999999999998 674 5789999999999987
Q ss_pred CCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCC------Cc--cCCceEeecCCCCCC-
Q 040810 200 KLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEG------LF--VAAAGLLGLGRGRLS- 270 (480)
Q Consensus 200 ~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~------~~--~~~~GIlGLG~~~~S- 270 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+ .| ...+||||||++.++
T Consensus 75 -----------~~~~~i~Yg~Gs~-~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~ 142 (361)
T 1mpp_A 75 -----------DYNLNITYGTGGA-NGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTA 142 (361)
T ss_dssp -----------EEEEEEECSSCEE-EEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSH
T ss_pred -----------CCeEEEEECCceE-EEEEEEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCccccc
Confidence 5899999999995 69999999999999999999999998754 33 468999999998665
Q ss_pred -----------hHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEE
Q 040810 271 -----------FPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGIS 333 (480)
Q Consensus 271 -----------l~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gis 333 (480)
++.+|.++ ..++||+||.+. .. .|.|+||++| +.|++.|+|+..+.....+|.|.|++|+
T Consensus 143 ~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~--~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~ 219 (361)
T 1mpp_A 143 MEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DG--GGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVK 219 (361)
T ss_dssp HHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SS--EEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEE
T ss_pred ccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CC--CcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEE
Confidence 44567665 479999999875 22 7999999999 5789999999875432339999999999
Q ss_pred ECCeeecceeccccccCCCCCCcEE-EcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCccccc-c
Q 040810 334 VGGAHVRGITASLFKLDPAGNGGVI-IDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKV-P 411 (480)
Q Consensus 334 Vgg~~~~~i~~~~~~~~~~~~~~~i-iDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~-P 411 (480)
|+++.+. .+. ...+| |||||++++||+++|++|++++.+.. +...+.. ...|+. ...+ |
T Consensus 220 v~~~~~~-~~~---------~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~---~~~~g~~-~~~C~~-----~~~~~p 280 (361)
T 1mpp_A 220 IDGSDAV-SFD---------GAQAFTIDTGTNFFIAPSSFAEKVVKAALPDA---TESQQGY-TVPCSK-----YQDSKT 280 (361)
T ss_dssp ETTEEEE-EEE---------EEEEEEEETTCCSEEEEHHHHHHHHHHHCTTC---EEETTEE-EEEHHH-----HTTCCC
T ss_pred ECCeeec-cCC---------CCEEEEECCCCCceeCCHHHHHHHHHHhCCcc---cCCCCcE-EEECCC-----cccCCC
Confidence 9998774 321 24689 99999999999999999999997642 2222221 223554 3567 9
Q ss_pred eEEEEE--c-----CeEEEECCCCcEEEecCCCcEEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 412 TVVLHF--R-----GADVSLPATNYLIPVDSSGTFCF-AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 412 ~lt~~F--~-----G~~~~l~~~~yl~~~~~~g~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+|+|+| + |++++||+++|+++...++..|+ +|.+...+.||||++|||++|+|||++++|||||+++|+
T Consensus 281 ~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~ 357 (361)
T 1mpp_A 281 TFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG 357 (361)
T ss_dssp EEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred cEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCEEEEEEcccC
Confidence 999999 7 89999999999998754456898 888765568999999999999999999999999999995
No 12
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=7.4e-57 Score=453.09 Aligned_cols=300 Identities=24% Similarity=0.402 Sum_probs=253.0
Q ss_pred eecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC--CCCCCCCCCCCCCCCCCccccCCCCcccCCC
Q 040810 124 SSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK--KCYSQTDPVFDPAKSRSFATVPCRSPLCRKL 201 (480)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~--~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 201 (480)
..|+.+. .+++|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 5 ~~~l~n~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~--~~~~y~~~~SsT~~~~---------- 69 (323)
T 3cms_A 5 SVPLTNY---LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACK--NHQRFDPRKSSTFQNL---------- 69 (323)
T ss_dssp EEEEEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH--TSCCBCGGGCTTCEEE----------
T ss_pred eeeeEec---cCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCccccc--CCCCCCCccCCCeEEC----------
Confidence 4667653 3689999999999999999999999999999999995 564 5789999999999987
Q ss_pred CCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hH
Q 040810 202 DSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FP 272 (480)
Q Consensus 202 ~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~ 272 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++ +.
T Consensus 70 ---------~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 139 (323)
T 3cms_A 70 ---------GKPLSIHYGTGSM-QGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVF 139 (323)
T ss_dssp ---------EEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHH
T ss_pred ---------CcEEEEEeCCCCe-EEEEEEEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHH
Confidence 5899999999985 599999999999999999999999987652 3 468999999998764 56
Q ss_pred HHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccc
Q 040810 273 TQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASL 346 (480)
Q Consensus 273 ~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~ 346 (480)
.+|.++ ..++||+||.+... .|.|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+. ++
T Consensus 140 ~~l~~q~~i~~~~FS~~l~~~~~---~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~~--- 208 (323)
T 3cms_A 140 DNMMNRHLVAQDLFSVYMDRNGQ---ESMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGVVVA-CE--- 208 (323)
T ss_dssp HHHHHTTCSSSSEEEEECCTTSS---CEEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEEE-ST---
T ss_pred HHHHHCCCCCCCEEEEEECCCCC---CEEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEECCEEee-cC---
Confidence 677765 47999999987532 4999999999 468999999985 4699999999999998775 32
Q ss_pred cccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECC
Q 040810 347 FKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPA 426 (480)
Q Consensus 347 ~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~ 426 (480)
....+||||||++++||+++|++|++++.+... ..+ .|.++|.....+|+|+|+|+|++++||+
T Consensus 209 ------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~----~~g------~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 272 (323)
T 3cms_A 209 ------GGCQAILDTGTSKLVGPSSDILNIQQAIGATQN----QYG------EFDIDCDNLSYMPTVVFEINGKMYPLTP 272 (323)
T ss_dssp ------TCEEEEECTTCCSEEECHHHHHHHHHHHTCEEE----TTT------EEEECTTCTTTSCCEEEEETTEEEEECH
T ss_pred ------CCcEEEEecCCccEeCCHHHHHHHHHHhCCeec----CCC------cEEEECCCCccCceEEEEECCEEEEECH
Confidence 245799999999999999999999999965321 112 2344555556799999999999999999
Q ss_pred CCcEEEecCCCcEEE-EEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 427 TNYLIPVDSSGTFCF-AFAGT-MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 427 ~~yl~~~~~~g~~Cl-~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
++|+++ .+..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 273 ~~y~~~---~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 273 SAYTSQ---DQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp HHHEEE---ETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHhccC---CCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 999998 256898 68876 35689999999999999999999999999975
No 13
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=4.1e-57 Score=454.20 Aligned_cols=301 Identities=26% Similarity=0.415 Sum_probs=253.8
Q ss_pred ecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCC
Q 040810 125 SSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSS 204 (480)
Q Consensus 125 ~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~ 204 (480)
.|+.+. .+.+|+++|+||||||++.|++||||+++||+|.+|..|.|+.++.|||++|+||+..
T Consensus 3 ~~l~n~---~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------- 66 (320)
T 4aa9_A 3 EPLTSY---LDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL------------- 66 (320)
T ss_dssp -----C---CCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEE-------------
T ss_pred ccceec---cCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcC-------------
Confidence 355443 3789999999999999999999999999999999999766667899999999999987
Q ss_pred CCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHh
Q 040810 205 GCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQT 275 (480)
Q Consensus 205 ~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql 275 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++ +..+|
T Consensus 67 ------~~~~~i~Yg~gs~-~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 139 (320)
T 4aa9_A 67 ------GKPLSIHYGTGSM-EGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNM 139 (320)
T ss_dssp ------EEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHH
T ss_pred ------CcEEEEEECCcEE-EEEEEEEEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHH
Confidence 5899999999995 699999999999999999999999987763 3 457999999987653 66777
Q ss_pred hhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecccccc
Q 040810 276 GRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKL 349 (480)
Q Consensus 276 ~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~ 349 (480)
.++ ..++||+||.+. .. .|.|+||++| +.|++.|+|+.. +.+|.|.|++|+||++.+. .+
T Consensus 140 ~~~g~i~~~~Fs~~l~~~-~~--~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~-~~------ 205 (320)
T 4aa9_A 140 MDRHLVARDLFSVYMDRN-GQ--GSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTINGVAVA-CV------ 205 (320)
T ss_dssp HHTTCSSSSEEEEECCSS-SS--CCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEETTEEEE-ST------
T ss_pred HhCCCCCCceEEEEeCCC-CC--CeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEECCEEec-cC------
Confidence 765 478999999985 22 7999999999 568999999975 5799999999999998775 32
Q ss_pred CCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCc
Q 040810 350 DPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNY 429 (480)
Q Consensus 350 ~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~y 429 (480)
....+||||||++++||+++|++|.+++.+... ..+ .|.++|.....+|+|+|+|+|++++||+++|
T Consensus 206 ---~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g------~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y 272 (320)
T 4aa9_A 206 ---GGCQAILDTGTSVLFGPSSDILKIQMAIGATEN----RYG------EFDVNCGNLRSMPTVVFEINGRDYPLSPSAY 272 (320)
T ss_dssp ---TCEEEEECTTCSSEEEEHHHHHHHHHHTTCEEC----TTS------CEEECGGGGGGCCCEEEEETTEEEEECHHHH
T ss_pred ---CCcEEEEECCCCcEECCHHHHHHHHHHhCCccc----CCC------cEEEeCCCCCcCceEEEEECCEEEEECHHHh
Confidence 245799999999999999999999999865421 112 3555666667899999999999999999999
Q ss_pred EEEecCCCcEEE-EEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 430 LIPVDSSGTFCF-AFAGT-MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 430 l~~~~~~g~~Cl-~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+.+. +..|+ +|.+. .++.||||++|||++|+|||++++|||||+++
T Consensus 273 ~~~~---~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 273 TSKD---QGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp EEEE---TTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ccCC---CCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 9762 56898 68765 34579999999999999999999999999975
No 14
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=1.9e-56 Score=453.46 Aligned_cols=302 Identities=23% Similarity=0.354 Sum_probs=253.1
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecC--CCCCC-------CCCCCCCCCCCCCCCccccCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCA--PCKKC-------YSQTDPVFDPAKSRSFATVPC 193 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~--~C~~C-------~~~~~~~fdps~SsT~~~~~C 193 (480)
+.+|+.+ ++++|+++|.||||+|++.|+|||||+++||+|. +|..| .|+.++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-- 76 (342)
T 2qzx_A 3 VAVTLHN----EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNL-- 76 (342)
T ss_dssp EEEEEEE----CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEE--
T ss_pred eeEEEec----CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccC--
Confidence 4567765 3689999999999999999999999999999966 78744 2356789999999999987
Q ss_pred CCcccCCCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCC----
Q 040810 194 RSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRL---- 269 (480)
Q Consensus 194 ~~~~C~~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~---- 269 (480)
.|.|.+.|++|+.+.|.+++|+|+|++..++++.|||++... ..+||||||++.+
T Consensus 77 -----------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~----~~~GilGLg~~~~~~~~ 135 (342)
T 2qzx_A 77 -----------------NTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWSTS----ARKGILGIGFQSGEATE 135 (342)
T ss_dssp -----------------EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC----SSSCEEECSCGGGCSSS
T ss_pred -----------------CCcEEEEeCCCCeEEEEEEEEEEEECCEEecceEEEEEEecC----CCcCEEEEccccccCCC
Confidence 599999999999878999999999999999999999999764 5799999999865
Q ss_pred ----ChHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeee
Q 040810 270 ----SFPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHV 339 (480)
Q Consensus 270 ----Sl~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~ 339 (480)
+++.||.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+..+ .+|.|.|++|+||++.+
T Consensus 136 ~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~l~~i~v~g~~~ 209 (342)
T 2qzx_A 136 FDYDNLPISLRNQGIIGKAAYSLYLNSAEAS--TGQIIFGGIDKAKYSGSLVDLPITSE----KKLTVGLRSVNVRGRNV 209 (342)
T ss_dssp SCCCCHHHHHHHTTSSSSSEEEEECCCTTCS--EEEEEETEEETTSBSSCCEEEECCCS----SSCEEEEEEEEETTEEE
T ss_pred ccCccHHHHHHHCCCcCccEEEEEeCCCCCC--CeEEEECccchhhEecceEEEeccCC----ceEEEEEeEEEECCEec
Confidence 678898876 468999999875333 7999999998 5789999999863 48999999999999887
Q ss_pred cceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEc-
Q 040810 340 RGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFR- 418 (480)
Q Consensus 340 ~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~- 418 (480)
. .+ ..+||||||++++||+++|++|++++.+..... ...+ ..|.++|.. +|+|+|+|+
T Consensus 210 ~-~~-----------~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~-~~~~-----~~~~~~C~~---~p~i~f~f~~ 268 (342)
T 2qzx_A 210 D-AN-----------TNVLLDSGTTISYFTRSIVRNILYAIGAQMKFD-SAGN-----KVYVADCKT---SGTIDFQFGN 268 (342)
T ss_dssp E-EE-----------EEEEECTTCSSEEECHHHHHHHHHHHTCEEEEC-TTSC-----EEEEECTTC---CCEEEEEETT
T ss_pred C-CC-----------cCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeec-cCCC-----cEEEEECCC---CCcEEEEECC
Confidence 6 32 369999999999999999999999997754211 1111 134455543 899999995
Q ss_pred CeEEEECCCCcEEEec----CCCcEEEE-EEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 419 GADVSLPATNYLIPVD----SSGTFCFA-FAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 419 G~~~~l~~~~yl~~~~----~~g~~Cl~-~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
|++++||+++|+++.. +.+..|++ |.+. +.||||++|||++|+|||++++|||||+++|+
T Consensus 269 g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 269 NLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp TEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CcEEEEcHHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 9999999999999753 23468984 5554 46999999999999999999999999999995
No 15
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=1.8e-56 Score=451.31 Aligned_cols=303 Identities=24% Similarity=0.473 Sum_probs=253.6
Q ss_pred ecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCC
Q 040810 125 SSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSS 204 (480)
Q Consensus 125 ~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~ 204 (480)
.|+. ..+++|+++|.||||+|++.|++||||+++||+|.+|..+.|+.++.|||++|+||+..
T Consensus 5 ~~l~----~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~------------- 67 (329)
T 1htr_B 5 EPMA----YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTN------------- 67 (329)
T ss_dssp CGGG----GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEE-------------
T ss_pred eeeE----EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEEC-------------
Confidence 5665 24789999999999999999999999999999999998533345789999999999987
Q ss_pred CCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHh
Q 040810 205 GCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQT 275 (480)
Q Consensus 205 ~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql 275 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ...+||||||++.++ ++.+|
T Consensus 68 ------~~~~~i~Yg~gs~-~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 140 (329)
T 1htr_B 68 ------GQTFSLQYGSGSL-TGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGM 140 (329)
T ss_dssp ------EEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHH
T ss_pred ------CcEEEEEeCCCCe-EEEEEeeeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHH
Confidence 5899999999997 699999999999999999999999987653 3 468999999998775 56677
Q ss_pred hhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecccccc
Q 040810 276 GRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKL 349 (480)
Q Consensus 276 ~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~ 349 (480)
.++ ..++||+||.+.... ..|.|+||++| +.|++.|+|+.. +.+|.|.|++|+||++.+. ..
T Consensus 141 ~~qg~i~~~~Fs~~L~~~~~~-~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~~------ 208 (329)
T 1htr_B 141 VQEGALTSPVFSVYLSNQQGS-SGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLIGGQASG-WC------ 208 (329)
T ss_dssp HHTTCSSSSEEEEEECSSCSS-EEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEETTEECC-TT------
T ss_pred HhcCCCCCCEEEEEEcCCCCC-CCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEECCceee-ec------
Confidence 765 479999999886432 26999999999 468999999985 5699999999999998753 11
Q ss_pred CCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCc
Q 040810 350 DPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNY 429 (480)
Q Consensus 350 ~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~y 429 (480)
.....+||||||++++||+++|++|++++.+... ..+. |.++|.....+|+|+|+|+|++++||+++|
T Consensus 209 --~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~----~~g~------~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y 276 (329)
T 1htr_B 209 --SEGCQAIVDTGTSLLTVPQQYMSALLQATGAQED----EYGQ------FLVNCNSIQNLPSLTFIINGVEFPLPPSSY 276 (329)
T ss_dssp --TTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEEC----TTSC------EEECGGGGGGSCCEEEEETTEEEEECHHHH
T ss_pred --CCCceEEEecCCccEECCHHHHHHHHHHhCCeec----CCCe------EEEeCCCcccCCcEEEEECCEEEEECHHHh
Confidence 2346799999999999999999999999965421 1222 233444446799999999999999999999
Q ss_pred EEEecCCCcEEE-EEEecC-----CC-ceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 430 LIPVDSSGTFCF-AFAGTM-----SG-LSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 430 l~~~~~~g~~Cl-~~~~~~-----~~-~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+++.. + .|+ +|.+.+ ++ .||||++|||++|+|||++++|||||+++
T Consensus 277 ~~~~~--g-~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 277 ILSNN--G-YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EEECS--S-CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccCC--C-EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 99865 4 898 787642 34 79999999999999999999999999975
No 16
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=2.4e-56 Score=451.36 Aligned_cols=298 Identities=20% Similarity=0.386 Sum_probs=252.2
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecC--CCCCC-------CCCCCCCCCCCCCCCccccCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCA--PCKKC-------YSQTDPVFDPAKSRSFATVPC 193 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~--~C~~C-------~~~~~~~fdps~SsT~~~~~C 193 (480)
+.+|+.+. +++|+++|.||||+|++.|++||||+++||+|. +|..| .|+.++.|||++|+||+..
T Consensus 3 ~~~~l~~~----~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-- 76 (334)
T 1j71_A 3 VPTTLINE----GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNL-- 76 (334)
T ss_dssp EEEEEEEC----SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEE--
T ss_pred eeEEEecC----CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccC--
Confidence 45677653 589999999999999999999999999999976 78754 3456789999999999987
Q ss_pred CCcccCCCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCC----
Q 040810 194 RSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRL---- 269 (480)
Q Consensus 194 ~~~~C~~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~---- 269 (480)
.|.|.+.|++|+.+.|.+++|+|+|++..++++.|||++... ..+||||||++.+
T Consensus 77 -----------------~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~ 135 (334)
T 1j71_A 77 -----------------NQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTS----VDQGIMGIGFTADEAGY 135 (334)
T ss_dssp -----------------EEEEEEEBTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES----SSSCEEECSCGGGSSTT
T ss_pred -----------------CCceEEEECCCCEEEEEEEEEEEEECCEEEccEEEEEEEecC----CCccEEEEcCCcccCcc
Confidence 599999999999878999999999999999999999999764 6799999999865
Q ss_pred ----ChHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeee
Q 040810 270 ----SFPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHV 339 (480)
Q Consensus 270 ----Sl~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~ 339 (480)
+++.||.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+
T Consensus 136 ~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~ 209 (334)
T 1j71_A 136 NLYDNVPVTLKKQGIINKNAYSLYLNSEDAS--TGKIIFGGVDNAKYTGTLTALPVTS----SVELRVHLGSINFDGTSV 209 (334)
T ss_dssp CCCCCHHHHHHHTTSCSSSEEEEECCCTTCS--EEEEEETEEETTSEEEEEEEEECCC----SSSCEEEEEEEEETTEEE
T ss_pred ccCCcHHHHHHHCCCCCccEEEEEeCCCCCC--CeEEEEeeechHHccCceEEEEccC----CCeEEEEEeEEEECCEec
Confidence 678898876 468999999875333 7999999998 457999999986 358999999999999887
Q ss_pred cceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccc-cCCCcccccceEEEEEc
Q 040810 340 RGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFD-LSGKTEVKVPTVVLHFR 418 (480)
Q Consensus 340 ~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~-~~~~~~~~~P~lt~~F~ 418 (480)
. .+ ..+||||||++++||+++|++|++++.+... ...+ .|. ++|.. +|+|+|+|+
T Consensus 210 ~-~~-----------~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~~------~~~~~~C~~---~p~i~f~f~ 265 (334)
T 1j71_A 210 S-TN-----------ADVVLDSGTTITYFSQSTADKFARIVGATWD---SRNE------IYRLPSCDL---SGDAVFNFD 265 (334)
T ss_dssp E-EE-----------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE---TTTT------EEECSSSCC---CSEEEEEES
T ss_pred c-CC-----------ccEEEeCCCCcEecCHHHHHHHHHHcCCccc---CCCc------eEEEEcCCC---CCceEEEEc
Confidence 6 32 3699999999999999999999999977542 1111 233 44532 899999994
Q ss_pred -CeEEEECCCCcEEEecCCCcEEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 419 -GADVSLPATNYLIPVDSSGTFCF-AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 419 -G~~~~l~~~~yl~~~~~~g~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
|++++||+++|+++..+ +..|+ +|.+. +.||||+.|||++|+|||++++|||||+++|+
T Consensus 266 ~g~~~~i~~~~y~~~~~~-~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 266 QGVKITVPLSELILKDSD-SSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp TTCEEEEEGGGGEEECSS-SSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred CCcEEEECHHHheeecCC-CCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 99999999999998653 44698 56554 46999999999999999999999999999995
No 17
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=5.2e-56 Score=449.67 Aligned_cols=300 Identities=22% Similarity=0.401 Sum_probs=254.1
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEe-----cCCCCCCCCCCCCCCCCCCCCCccccCCCCcc
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQ-----CAPCKKCYSQTDPVFDPAKSRSFATVPCRSPL 197 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~-----~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~ 197 (480)
+++|+.+. +++|+++|.||||||++.|++||||+++||+ |.+|..|. .++.|||++|+||+..
T Consensus 3 i~~~l~~~----~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~--~~~~y~~~~SsT~~~~------ 70 (339)
T 3fv3_A 3 ISLSLINE----GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCK--SSGTFTPSSSSSYKNL------ 70 (339)
T ss_dssp EEEEEEEC----SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTT--TTCCBCGGGCTTCEEE------
T ss_pred eeeEEEcC----CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCC--CCCcCCCccCcceeeC------
Confidence 46677654 5799999999999999999999999999998 66666775 5789999999999988
Q ss_pred cCCCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCCC-------
Q 040810 198 CRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRLS------- 270 (480)
Q Consensus 198 C~~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~S------- 270 (480)
.|.|.+.|++|+...|.+++|+|+|++..++++.|||++...+ .+||||||++.++
T Consensus 71 -------------~~~~~i~Yg~gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~----~~GilGLg~~~~~~~~~~~~ 133 (339)
T 3fv3_A 71 -------------GAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSV----DQGILGIGYTSNEAVYDTSG 133 (339)
T ss_dssp -------------EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEESS----SSCEEECSCGGGCCCBCTTS
T ss_pred -------------CceEEEEECCCceEEEEEEEEEEEECCEEECceEEEEEEecCC----CceeEEecCccccccccccc
Confidence 5999999999987789999999999999999999999998763 6999999998753
Q ss_pred ---------hHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEEC
Q 040810 271 ---------FPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVG 335 (480)
Q Consensus 271 ---------l~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVg 335 (480)
++.||.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. ..+|.|.|++|+|+
T Consensus 134 ~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~ 207 (339)
T 3fv3_A 134 RQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE--TGTIIFGGVDNAKYSGKLVAEQVTS----SQALTISLASVNLK 207 (339)
T ss_dssp CBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCS--EEEEEETEEETTSBSSCCEEEEBCC----SSSCEEEEEEEEES
T ss_pred cccCccCCcHHHHHHHCCCCCCceEEEEECCCCCC--CeEEEEeeechHHeecceEEEeccc----CccEEEEEEEEEEC
Confidence 78888876 468999999876433 7999999998 578999999986 35899999999999
Q ss_pred CeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEE
Q 040810 336 GAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVL 415 (480)
Q Consensus 336 g~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~ 415 (480)
++.+. .+ ..+||||||++++||+++|++|.+++.+.........+ -|.++|.. ..+|+|+|
T Consensus 208 g~~~~-~~-----------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~------~~~~~C~~-~~~p~i~f 268 (339)
T 3fv3_A 208 GSSFS-FG-----------DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQY------LYFIDCNT-DTSGTTVF 268 (339)
T ss_dssp SCEEE-EE-----------EEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEE------EEEECTTC-CCCSEEEE
T ss_pred CEeec-CC-----------ccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCc------eEEEecCC-CCCCcEEE
Confidence 99876 32 46999999999999999999999999865321101111 23345544 56899999
Q ss_pred EEc-CeEEEECCCCcEEEecCCCcEEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 416 HFR-GADVSLPATNYLIPVDSSGTFCF-AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 416 ~F~-G~~~~l~~~~yl~~~~~~g~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+|+ |++++||+++|+++.. +..|+ +|.+ .+.||||+.|||++|+|||++++|||||+++|+
T Consensus 269 ~f~~g~~~~v~~~~~~~~~~--~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 269 NFGNGAKITVPNTEYVYQNG--DGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp EETTSCEEEEEGGGGEEECS--SSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EECCCCEEEECHHHheeeCC--CCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 996 8999999999999864 45685 8887 357999999999999999999999999999995
No 18
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=8.8e-56 Score=455.06 Aligned_cols=321 Identities=26% Similarity=0.490 Sum_probs=259.1
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCC-
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKL- 201 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~- 201 (480)
+.+||.... .+++|+++|.|||| |+|||||+++||+|.+|. +|+.++|.++.|...
T Consensus 3 ~~~pv~~~~--~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~----------------~~~~~~C~s~~C~~~~ 59 (381)
T 1t6e_X 3 VLAPVTKDP--ATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ----------------PPAEIPCSSPTCLLAN 59 (381)
T ss_dssp EEEEEEECT--TTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC----------------CCCCCBTTSHHHHHHH
T ss_pred eEEeEEecC--CCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC----------------CCCccCCCCchhcccc
Confidence 346776432 47899999999998 999999999999998751 366788988888642
Q ss_pred --CCCCCCC--------CCCc-eeeeeeCCCceeEEEEEEEEEEECC----eeeeeE----EEEEEecC--CCCccCCce
Q 040810 202 --DSSGCNR--------RNTC-LYQVSYGDGSITVGDFSTETLTFRG----TRVARV----ALGCGHDN--EGLFVAAAG 260 (480)
Q Consensus 202 --~~~~C~~--------~~~~-~y~~~Ygdgs~~~G~~~~Dtvt~g~----~~v~~~----~fG~~~~~--~~~~~~~~G 260 (480)
....|.. ++.| .|.+.|+||+.+.|.+++|+|+|++ ..++++ .|||++.+ .+.+..++|
T Consensus 60 ~~~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~~~~~dG 139 (381)
T 1t6e_X 60 AYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTG 139 (381)
T ss_dssp SSCCTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEE
T ss_pred CCCCCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCCCCCCce
Confidence 2335653 2357 5999999999877999999999974 567765 56999876 444467899
Q ss_pred EeecCCCCCChHHHhhhc--CCCcEEEEeccCCCCCCCcEEEeccCCC-----CCCeEEEecccCCCCCeeEEEEEeeEE
Q 040810 261 LLGLGRGRLSFPTQTGRR--FNRKFSYCLVDRSTSAKPSSMVFGDSAV-----SRTARFTPLLANPKLDTFYYVELVGIS 333 (480)
Q Consensus 261 IlGLG~~~~Sl~~ql~~~--~~~~FS~~L~~~~~~~~~g~L~fG~~d~-----~g~~~~tpl~~~~~~~~~y~v~l~gis 333 (480)
|||||++++|+++||..+ ..++||+||.+. . .|.|+||+.+. .+++.|+|++.++.. .+|+|.|++|+
T Consensus 140 IlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~--~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~-~~y~v~l~~i~ 214 (381)
T 1t6e_X 140 VAGLANSGLALPAQVASAQKVANRFLLCLPTG--G--PGVAIFGGGPVPWPQFTQSMPYTPLVTKGGS-PAHYISARSIV 214 (381)
T ss_dssp EEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--S--CEEEEESCCSCSCHHHHTTCCEEECBCCTTC-CSCEECEEEEE
T ss_pred EEEeCCCcchhHHHHhhhcccCceEEEEeCCC--C--CeeEEeCCcccccccccCcceeeccccCCCC-cceEEEEEEEE
Confidence 999999999999999875 679999999875 2 79999999873 589999999986533 35779999999
Q ss_pred ECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhc-------cCCcC-CCCCccccccccCCC
Q 040810 334 VGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGAS-------SLKRA-PDFSLFDTCFDLSGK 405 (480)
Q Consensus 334 Vgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~-------~~~~~-~~~~~~~~Cy~~~~~ 405 (480)
||++.+. ++...|. ++++||||||++++||+++|++|+++|.+++. .+++. .....++.||+.++.
T Consensus 215 vg~~~~~-~~~~~~~-----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~ 288 (381)
T 1t6e_X 215 VGDTRVP-VPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTL 288 (381)
T ss_dssp ETTEECC-CCTTCSC-----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGC
T ss_pred EcCEEec-CCHHHcc-----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCC
Confidence 9999987 7766552 46799999999999999999999999988763 23222 222345789987754
Q ss_pred cc----cccceEEEEEc-CeEEEECCCCcEEEecCCCcEEEEEEecCC--------CceeecHhhhcceEEEEECCCCEE
Q 040810 406 TE----VKVPTVVLHFR-GADVSLPATNYLIPVDSSGTFCFAFAGTMS--------GLSIIGNIQQQGFRVVYDLAASRI 472 (480)
Q Consensus 406 ~~----~~~P~lt~~F~-G~~~~l~~~~yl~~~~~~g~~Cl~~~~~~~--------~~~IlG~~fl~~~yvvfD~~~~rI 472 (480)
.. ..+|+|+|+|+ |++++||+++|+++.. .+..|++|++.+. +.||||+.|||++|+|||++++||
T Consensus 289 ~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~ri 367 (381)
T 1t6e_X 289 GNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRL 367 (381)
T ss_dssp CEETTEECCCCEEEEETTSCEEEECHHHHEEEEE-TTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEE
T ss_pred cccccCCcCCeEEEEECCCcEEEeCCCeEEEEcC-CCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEE
Confidence 32 47999999998 6999999999999875 3779999987643 579999999999999999999999
Q ss_pred EEeeCC
Q 040810 473 GFAPRG 478 (480)
Q Consensus 473 GFa~~~ 478 (480)
|||++.
T Consensus 368 GfA~~~ 373 (381)
T 1t6e_X 368 GFSRLP 373 (381)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 999864
No 19
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=1.2e-55 Score=452.87 Aligned_cols=301 Identities=19% Similarity=0.327 Sum_probs=254.0
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLD 202 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 202 (480)
...|+.+ ..+++|+++|.||||||++.|+|||||+++||+|.+|..+.|+.++.|||++|+||+..
T Consensus 52 ~~~pl~~---~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~----------- 117 (375)
T 1miq_A 52 DVIELDD---VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKD----------- 117 (375)
T ss_dssp BCCCGGG---TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEE-----------
T ss_pred ceEEccc---CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEEC-----------
Confidence 4467764 24789999999999999999999999999999999998544456899999999999987
Q ss_pred CCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEec----CCCCc--cCCceEeecCCCCCC------
Q 040810 203 SSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHD----NEGLF--VAAAGLLGLGRGRLS------ 270 (480)
Q Consensus 203 ~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~----~~~~~--~~~~GIlGLG~~~~S------ 270 (480)
+|.|.+.|++|+. .|.+++|+|+|++..+++ .|||++. .. .| ...+||||||++.++
T Consensus 118 --------~~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~~~s~~~~~~ 186 (375)
T 1miq_A 118 --------GTKVDITYGSGTV-KGFFSKDLVTLGHLSMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWKDLSIGSIDP 186 (375)
T ss_dssp --------EEEEEEEETTEEE-EEEEEEEEEEETTEEEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSCCTTCSSCCC
T ss_pred --------CcEEEEEeCCCeE-EEEEEEEEEEEcCceECc-EEEEEEecccccc-ccccCCCceEEeCCCCcccccCCCC
Confidence 5999999999995 699999999999999999 9999998 54 44 568999999998764
Q ss_pred hHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceec
Q 040810 271 FPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITA 344 (480)
Q Consensus 271 l~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~ 344 (480)
++.+|.++ ..++||+||.+... ..|.|+||++| +.|++.|+|+.. +.||.|.|+ |+||++.+.
T Consensus 187 ~~~~l~~qg~i~~~~FS~~L~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~-i~v~g~~~~---- 255 (375)
T 1miq_A 187 IVVELKNQNKIDNALFTFYLPVHDV--HAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTME---- 255 (375)
T ss_dssp HHHHHHHTTSSSSSEEEEECCTTCT--TEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEEE-EEETTEEEE----
T ss_pred HHHHHHhccCcCCCEEEEEecCCCC--CCeEEEEcccCHHHcCCceEEEecCC----CceEEEEEE-EEECCEEcc----
Confidence 56677765 47999999998643 27999999999 568999999975 579999999 999998651
Q ss_pred cccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEE
Q 040810 345 SLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSL 424 (480)
Q Consensus 345 ~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l 424 (480)
...+||||||++++||+++|++|.+++.+.. +...+. |.++|.. ..+|+|+|+|+|++++|
T Consensus 256 ---------~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~---~~~~g~------~~~~C~~-~~~P~i~f~f~g~~~~l 316 (375)
T 1miq_A 256 ---------KANVIVDSGTTTITAPSEFLNKFFANLNVIK---VPFLPF------YVTTCDN-KEMPTLEFKSANNTYTL 316 (375)
T ss_dssp ---------EEEEEECTTBSSEEECHHHHHHHHHHHTCEE---CTTSSC------EEEETTC-TTCCCEEEECSSCEEEE
T ss_pred ---------cceEEecCCCccEEcCHHHHHHHHHHhCCcc---cCCCCe------EEEECCC-CCCCcEEEEECCEEEEE
Confidence 2469999999999999999999999997642 222222 3334444 57999999999999999
Q ss_pred CCCCcEEEecC-CCcEEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 425 PATNYLIPVDS-SGTFCF-AFAGTM--SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 425 ~~~~yl~~~~~-~g~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
|+++|+++... ++..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 317 ~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 317 EPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp CGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 99999998753 346898 888775 3689999999999999999999999999874
No 20
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=4.1e-56 Score=450.73 Aligned_cols=306 Identities=22% Similarity=0.384 Sum_probs=257.8
Q ss_pred CceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC----CCCCCCCCCCCCCCCCCccccCCCCcc
Q 040810 122 GFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK----KCYSQTDPVFDPAKSRSFATVPCRSPL 197 (480)
Q Consensus 122 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~ 197 (480)
....|+.+.. +.+|+++|.||||||++.|++||||+++||+|.+|. .| +.++.|||++|+||+..
T Consensus 7 ~~~~~l~n~~---d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~------ 75 (341)
T 3k1w_A 7 TSSVILTNYM---DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC--VYHKLFDASDSSSYKHN------ 75 (341)
T ss_dssp CEEEEEEEET---TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHH--HTSCCBCGGGCTTCEEE------
T ss_pred CccccceEcc---CCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcc--cCCCCCCCCcCcCeeEC------
Confidence 4567887643 689999999999999999999999999999999998 45 46789999999999986
Q ss_pred cCCCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC----
Q 040810 198 CRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS---- 270 (480)
Q Consensus 198 C~~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S---- 270 (480)
.|.|.+.|++|+. .|.+++|+|+|++..+ ++.|||++...+. | ...+||||||++.++
T Consensus 76 -------------~~~~~i~Yg~gs~-~G~~~~D~v~ig~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 140 (341)
T 3k1w_A 76 -------------GTELTLRYSTGTV-SGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRV 140 (341)
T ss_dssp -------------EEEEEEEETTEEE-EEEEEEEEEEETTEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGC
T ss_pred -------------CCEEEEEECCcEE-EEEEEEEEEEECCcee-eEEEEEEEEccccccccCCcceEEECCchhhcccCC
Confidence 5999999999995 6999999999999999 9999999987754 3 467999999998775
Q ss_pred --hHHHhhhc---CCCcEEEEeccCCC--CCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeec
Q 040810 271 --FPTQTGRR---FNRKFSYCLVDRST--SAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVR 340 (480)
Q Consensus 271 --l~~ql~~~---~~~~FS~~L~~~~~--~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~ 340 (480)
++.+|.++ ..++||+||.+... ....|.|+||++| +.|++.|+|+.. ..+|.|.|++|+||++.+.
T Consensus 141 ~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~ 216 (341)
T 3k1w_A 141 TPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSVGSSTLL 216 (341)
T ss_dssp CCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEEECCEEETTEEEE
T ss_pred CCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEEEeEEEECCEEee
Confidence 56677765 57999999987641 1227999999999 568999999985 5799999999999998754
Q ss_pred ceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCe
Q 040810 341 GITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGA 420 (480)
Q Consensus 341 ~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~ 420 (480)
. .....+||||||++++||++++++|.+++.+... ..+ |.++|.....+|+|+|+|+|+
T Consensus 217 -~---------~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g-------~~~~C~~~~~~p~i~f~f~g~ 275 (341)
T 3k1w_A 217 -C---------EDGCLALVDTGASYISGSTSSIEKLMEALGAKKR----LFD-------YVVKCNEGPTLPDISFHLGGK 275 (341)
T ss_dssp -C---------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----SSC-------EEEEGGGGGGCCCEEEEETTE
T ss_pred -c---------CCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec----CCC-------eEEeCCCCCcCCcEEEEECCE
Confidence 2 2245799999999999999999999999965421 112 455566567899999999999
Q ss_pred EEEECCCCcEEEecC-CCcEEE-EEEec-----CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 421 DVSLPATNYLIPVDS-SGTFCF-AFAGT-----MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 421 ~~~l~~~~yl~~~~~-~g~~Cl-~~~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+++||+++|+++... ++..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 276 ~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 276 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999999999987653 357898 68763 34679999999999999999999999999975
No 21
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=3.7e-55 Score=461.65 Aligned_cols=318 Identities=23% Similarity=0.412 Sum_probs=254.6
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC---CCCCCCCCCCCCCCCCCccccCCCCcccC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK---KCYSQTDPVFDPAKSRSFATVPCRSPLCR 199 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~ 199 (480)
...|+.+. .+++|+++|.||||||++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 42 ~~~~l~n~---~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~-------- 108 (478)
T 1qdm_A 42 DIVALKNY---MNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACY--LHSRYKAGASSTYKKN-------- 108 (478)
T ss_dssp CSGGGCCG---GGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGG--GSCCBCGGGCTTCBCC--------
T ss_pred ceEEeEec---cCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCcccc--CCCCCCcccCCCeeeC--------
Confidence 34677653 3689999999999999999999999999999999996 575 4689999999999876
Q ss_pred CCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCCh-----
Q 040810 200 KLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLSF----- 271 (480)
Q Consensus 200 ~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~Sl----- 271 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ..++||||||++.++.
T Consensus 109 -----------~~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p 176 (478)
T 1qdm_A 109 -----------GKPAAIQYGTGSI-AGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVP 176 (478)
T ss_dssp -----------CCEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCC
T ss_pred -----------CcEEEEEcCCCCe-EEEEEEEEEEECCeEECCEEEEEEEecCCcccccccccceecccccccccCCCCc
Confidence 5899999999995 599999999999999999999999987653 3 5679999999998764
Q ss_pred -HHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceec
Q 040810 272 -PTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITA 344 (480)
Q Consensus 272 -~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~ 344 (480)
..+|.++ ..++||+||.+.......|.|+||++| +.|++.|+|+.. .+||.|.|++|+||++.+. ++
T Consensus 177 ~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l~~i~v~g~~~~-~~- 250 (478)
T 1qdm_A 177 VWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDMGDVLVGGKSTG-FC- 250 (478)
T ss_dssp HHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEECCEEETTEECS-TT-
T ss_pred HHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEEeEEEECCEEEe-ec-
Confidence 4456554 468999999876322227999999999 458999999985 4699999999999998875 43
Q ss_pred cccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhh----------------------ccCCc-----------CC
Q 040810 345 SLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGA----------------------SSLKR-----------AP 391 (480)
Q Consensus 345 ~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~----------------------~~~~~-----------~~ 391 (480)
.+...+||||||++++||+++|++|.+++.+.. ...+. .+
T Consensus 251 -------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~ 323 (478)
T 1qdm_A 251 -------AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFD 323 (478)
T ss_dssp -------TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC---
T ss_pred -------CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccC
Confidence 234679999999999999999999999986531 00000 00
Q ss_pred CC----------------------------------------------------Cccccccc---------cCCCccccc
Q 040810 392 DF----------------------------------------------------SLFDTCFD---------LSGKTEVKV 410 (480)
Q Consensus 392 ~~----------------------------------------------------~~~~~Cy~---------~~~~~~~~~ 410 (480)
+. ...+.|+. ++|+....+
T Consensus 324 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~l 403 (478)
T 1qdm_A 324 GTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSM 403 (478)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTC
T ss_pred ccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccccc
Confidence 00 00123433 456655689
Q ss_pred ceEEEEEcCeEEEECCCCcEEEecCC-CcEEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 411 PTVVLHFRGADVSLPATNYLIPVDSS-GTFCF-AFAGTM-----SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 411 P~lt~~F~G~~~~l~~~~yl~~~~~~-g~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
|+|+|+|+|++++|+|++|+++...+ +..|+ +|...+ ++.||||++|||++|+|||++++|||||++.
T Consensus 404 P~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 404 PDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp CCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 99999999999999999999987642 35898 577532 4579999999999999999999999999863
No 22
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=3.1e-55 Score=441.60 Aligned_cols=295 Identities=21% Similarity=0.332 Sum_probs=248.1
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCce
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCL 213 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 213 (480)
.+++|+++|.|| +|++.|++||||+++||+|.+|..|.++.++.|||++|+ ++.. .|.
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-------------------~~~ 69 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLS-------------------GYS 69 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECT-------------------TCB
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccC-------------------CCE
Confidence 478999999999 999999999999999999999999988889999999998 5432 699
Q ss_pred eeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeecCCCCCC---------hHHHhhhc-CC
Q 040810 214 YQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGLGRGRLS---------FPTQTGRR-FN 280 (480)
Q Consensus 214 y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S---------l~~ql~~~-~~ 280 (480)
|.+.|++|+.+.|.+++|+|+|++..++++.|||++...+.+ ...+||||||++.++ +.+||.++ ..
T Consensus 70 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~i~~ 149 (325)
T 1ibq_A 70 WDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQLDS 149 (325)
T ss_dssp EEEECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSS
T ss_pred EEEEeCCCCEEEEEEEEeEEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHhcCC
Confidence 999999999777999999999999999999999999876544 367999999998765 45777765 57
Q ss_pred CcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 281 RKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 281 ~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
++||+||.+. . .|.|+||++| +.|++.|+|+..+ ..||.|.|++|+||++.+. .....+
T Consensus 150 ~~FS~~l~~~--~--~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~~~~~-----------~~~~~a 211 (325)
T 1ibq_A 150 PLFAVQLKHD--A--PGVYDFGYIDDSKYTGSITYTDADSS---QGYWGFSTDGYSIGDGSSS-----------SSGFSA 211 (325)
T ss_dssp SEEEEEEETT--E--EEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEECEEEETTSCCB-----------SCCEEE
T ss_pred cEEEEEecCC--C--CceEEECCcChhhccCceEEEEcCCC---CceEEEEECcEEECCeecc-----------CCCceE
Confidence 8999999863 2 7999999999 6799999999753 5799999999999998654 234579
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecC-C
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDS-S 436 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~-~ 436 (480)
||||||++++||+++|++|.+++.++. .....+. |.++|. ..+|+|+|+|+|++++||+++|+++... +
T Consensus 212 iiDSGTt~~~lP~~~~~~i~~~i~~a~--~~~~~g~------~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~ 281 (325)
T 1ibq_A 212 IADTGTTLILLDDEIVSAYYEQVSGAQ--ESYEAGG------YVFSCS--TDLPDFTVVIGDYKAVVPGKYINYAPVSTG 281 (325)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCB--CCSSSSS------CEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTT
T ss_pred EEeCCCCcEeCCHHHHHHHHHhCCCce--EcCcCCe------EEEEcC--CCCCcEEEEECCEEEEECHHHhcccccCCC
Confidence 999999999999999999999885432 1112222 223443 3689999999999999999999987643 2
Q ss_pred CcEEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 437 GTFCFA-FAGTM-SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 437 g~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
...|++ |.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 282 SSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp CSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 378985 77653 4689999999999999999999999999874
No 23
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1.5e-55 Score=446.81 Aligned_cols=303 Identities=21% Similarity=0.405 Sum_probs=250.0
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCC--CCCC-------CCCCCCCCCCCCCCCccccCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAP--CKKC-------YSQTDPVFDPAKSRSFATVPC 193 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~--C~~C-------~~~~~~~fdps~SsT~~~~~C 193 (480)
+.+|+.+ ++++|+++|.||||||++.|++||||+++||+|.. |..| .|+.++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~-- 76 (342)
T 3pvk_A 3 VPVTLHN----EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDL-- 76 (342)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEE--
T ss_pred cceEEec----CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeec--
Confidence 3455544 36899999999999999999999999999998654 5322 2245789999999999988
Q ss_pred CCcccCCCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCC----
Q 040810 194 RSPLCRKLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRL---- 269 (480)
Q Consensus 194 ~~~~C~~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~---- 269 (480)
.|.|.+.|++|+...|.+++|+|+|++..++++.|||++... ..+||||||++.+
T Consensus 77 -----------------~~~~~i~Yg~gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~----~~~GilGLg~~~~~~~~ 135 (342)
T 3pvk_A 77 -----------------NTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS----IDQGILGVGYKTNEAGG 135 (342)
T ss_dssp -----------------EEEEEEECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES----SSSCEEECSCGGGCSSC
T ss_pred -----------------CCeEEEEecCCCeEEEEEEEEEEEECCEEecceEEEEEEccC----CCccEEEecCccccccc
Confidence 589999999999777999999999999999999999999765 5799999999873
Q ss_pred ---ChHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeec
Q 040810 270 ---SFPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVR 340 (480)
Q Consensus 270 ---Sl~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~ 340 (480)
+++.||.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 136 ~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~--~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~ 209 (342)
T 3pvk_A 136 SYDNVPVTLKKQGVIAKNAYSLYLNSPDAA--TGQIIFGGVDNAKYSGSLIALPVTS----DRELRISLGSVEVSGKTIN 209 (342)
T ss_dssp SSCCHHHHHHHTTSSSSSEEEEECCCTTCS--EEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEEEETTEEEE
T ss_pred cCCcHHHHHHhcCCCCCceEEEEeCCCCCC--CcEEEECccCccceeeeeEEeecCc----cceEEEEEeEEEECCEEec
Confidence 688898876 468999999875433 7999999998 578999999986 3489999999999999886
Q ss_pred ceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEc-C
Q 040810 341 GITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFR-G 419 (480)
Q Consensus 341 ~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~-G 419 (480)
.+ ...+||||||++++||+++|++|.+++.+..... ..+ ..+|.++|.. .|+|+|+|+ |
T Consensus 210 -~~----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~--~~~----~~~~~~~C~~---~p~i~f~f~~g 269 (342)
T 3pvk_A 210 -TD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD--SNG----NSFYEVDCNL---SGDVVFNFSKN 269 (342)
T ss_dssp -EE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEEC--TTS----CEEEEECSCC---CSEEEEEESTT
T ss_pred -CC----------CceEEEeCCCCCeecCHHHHHHHHHHcCCeeccc--CCC----ceEEEEecCC---CCceEEEECCC
Confidence 43 2469999999999999999999999997654211 111 1135556653 599999998 8
Q ss_pred eEEEECCCCcEEEecC-CC---cEEE-EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 420 ADVSLPATNYLIPVDS-SG---TFCF-AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 420 ~~~~l~~~~yl~~~~~-~g---~~Cl-~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
++++||+++|+++... .+ ..|+ +|.+. +.||||+.|||++|+|||++++|||||+++|+
T Consensus 270 ~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~--~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 270 AKISVPASEFAASLQGDDGQPYDKCQLLFDVN--DANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp CEEEEEGGGGEEC----------CEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CEEEEcHHHheeeccccCCCcCCeeEEEEeeC--CCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 9999999999987432 23 6797 56653 57999999999999999999999999999995
No 24
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.6e-55 Score=460.32 Aligned_cols=302 Identities=19% Similarity=0.288 Sum_probs=253.4
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLD 202 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~ 202 (480)
...|+... .+++|+++|.||||||++.|++||||+++||+|.+|..+.|+.++.|||++|+||+..
T Consensus 128 ~~~~L~n~---~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~----------- 193 (453)
T 2bju_A 128 DNIELVDF---QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKD----------- 193 (453)
T ss_dssp EEEEEEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEE-----------
T ss_pred CceeeEec---CCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeEC-----------
Confidence 45677642 4689999999999999999999999999999999998555567899999999999987
Q ss_pred CCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCC--CC-c--cCCceEeecCCCCCC------h
Q 040810 203 SSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNE--GL-F--VAAAGLLGLGRGRLS------F 271 (480)
Q Consensus 203 ~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~--~~-~--~~~~GIlGLG~~~~S------l 271 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++ +.|||++... +. | ...+||||||++.++ +
T Consensus 194 --------~~~~~i~YgdGs~-~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~ 263 (453)
T 2bju_A 194 --------GTKVEMNYVSGTV-SGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPI 263 (453)
T ss_dssp --------EEEEEEECSSSEE-EEEEEEEEEEETTEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCH
T ss_pred --------CcEEEEEcCCCCe-EEEEEEEEEEEeCcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcH
Confidence 5999999999995 59999999999999999 9999999876 53 3 568999999998764 5
Q ss_pred HHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecc
Q 040810 272 PTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITAS 345 (480)
Q Consensus 272 ~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~ 345 (480)
+.+|.++ ..++||+||.+.+.. .|.|+||++| +.|++.|+|+.. +.||.|.|+ |+||+ .+ +
T Consensus 264 ~~~L~~qg~i~~~~FS~~L~~~~~~--~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~-I~Vgg-~~--~--- 330 (453)
T 2bju_A 264 VVELKNQNKIENALFTFYLPVHDKH--TGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD-AHVGN-IM--L--- 330 (453)
T ss_dssp HHHHHHTTSSSSCEEEEECCBTTTB--CEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE-EEETT-EE--E---
T ss_pred HHHHHHCCCCCCCEEEEEeCCCCCC--CeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE-EEECc-EE--e---
Confidence 5677765 479999999986322 7999999999 568999999986 469999999 99999 32 2
Q ss_pred ccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEEC
Q 040810 346 LFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLP 425 (480)
Q Consensus 346 ~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~ 425 (480)
....+||||||++++||+++|++|.+++.+. +...+. +|.++|.. ..+|+|+|+|+|++++||
T Consensus 331 -------~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g~-----~~~v~C~~-~~~P~itf~fgg~~~~l~ 393 (453)
T 2bju_A 331 -------EKANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFLP-----FYVTLCNN-SKLPTFEFTSENGKYTLE 393 (453)
T ss_dssp -------EEEEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTSS-----CEEEETTC-TTCCCEEEECSSCEEEEC
T ss_pred -------ccccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCCc-----eEEEecCC-CCCCcEEEEECCEEEEEC
Confidence 1357999999999999999999999888653 112221 24445554 679999999999999999
Q ss_pred CCCcEEEecC-CCcEEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 426 ATNYLIPVDS-SGTFCF-AFAGTM--SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 426 ~~~yl~~~~~-~g~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+++|+++... ++..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 394 PEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp HHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999998754 346898 788764 3589999999999999999999999999875
No 25
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=3.4e-55 Score=442.21 Aligned_cols=304 Identities=16% Similarity=0.239 Sum_probs=255.3
Q ss_pred ceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC--CCCCCCCCCCCCCCCCCccccCCCCcccCC
Q 040810 123 FSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK--KCYSQTDPVFDPAKSRSFATVPCRSPLCRK 200 (480)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~--~C~~~~~~~fdps~SsT~~~~~C~~~~C~~ 200 (480)
+..|+.+. .+.+|+++|.|| +|++.|++||||+++||+|.+|. .|.++.++.|||++| ||+..
T Consensus 7 ~~~~l~n~---~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~--------- 71 (330)
T 1yg9_A 7 LYKLVHVF---INTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISD--------- 71 (330)
T ss_dssp SCSCEEEE---ECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEE---------
T ss_pred eEeeeecC---CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEEC---------
Confidence 34566543 367999999999 89999999999999999999997 685567899999999 99886
Q ss_pred CCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc--cCCceEeecCCCCCC-------h
Q 040810 201 LDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF--VAAAGLLGLGRGRLS-------F 271 (480)
Q Consensus 201 ~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~--~~~~GIlGLG~~~~S-------l 271 (480)
++.|.+.|++|+. .|.+++|+|+|++..++++.|||++.....| ...+||||||++.++ +
T Consensus 72 ----------~~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~ 140 (330)
T 1yg9_A 72 ----------GNVQVKFFDTGSA-VGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTV 140 (330)
T ss_dssp ----------EEEEEEETTTEEE-EEEEEEEEEEETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCH
T ss_pred ----------CCEEEEEECCceE-EEEEEEEEEEECCEEEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCCH
Confidence 5899999999998 6999999999999999999999999874334 468999999998877 6
Q ss_pred HHHhhhc--CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccc
Q 040810 272 PTQTGRR--FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASL 346 (480)
Q Consensus 272 ~~ql~~~--~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~ 346 (480)
+.+|.++ ..++||+||.+..+....|.|+||++| +.|++.|+|+.. +.||.|.|++|+||++.+.
T Consensus 141 ~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~------ 210 (330)
T 1yg9_A 141 LENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVKIGDTTVA------ 210 (330)
T ss_dssp HHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEEETTEEEE------
T ss_pred HHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEEECCEEEc------
Confidence 7778765 589999999886332226999999999 568999999984 5799999999999998753
Q ss_pred cccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCcccccc-ccCCCcccccceEEEEEcCeEEEEC
Q 040810 347 FKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCF-DLSGKTEVKVPTVVLHFRGADVSLP 425 (480)
Q Consensus 347 ~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy-~~~~~~~~~~P~lt~~F~G~~~~l~ 425 (480)
.....+||||||++++||+++|++|++++.+... ..+. ..| .++|.....+|+|+|+|+|++++||
T Consensus 211 -----~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~~g~----~~~~~~~C~~~~~~p~i~f~fgg~~~~l~ 277 (330)
T 1yg9_A 211 -----PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVE----KTTT----RRICKLDCSKIPSLPDVTFVINGRNFNIS 277 (330)
T ss_dssp -----CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEE----ECSS----CEEEEECGGGGGGSCCEEEEETTEEEEEC
T ss_pred -----CCCcEEEEecCCccccCCHHHHHHHHHHhCCccc----CCCc----eEEEEEECCCccccCcEEEEECCEEEEEC
Confidence 2246799999999999999999999999965421 1120 124 5566655689999999999999999
Q ss_pred CCCcEEEecCCCcEEE-EEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 426 ATNYLIPVDSSGTFCF-AFAGT-MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 426 ~~~yl~~~~~~g~~Cl-~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
+++|+++. +..|+ +|.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 278 ~~~y~~~~---~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 278 SQYYIQQN---GNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp HHHHEEEE---TTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhcccC---CCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 99999986 46898 77764 34579999999999999999999999999875
No 26
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=8.9e-55 Score=437.93 Aligned_cols=293 Identities=21% Similarity=0.331 Sum_probs=245.8
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCce
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCL 213 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 213 (480)
.+.+|+++|.|| ||++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++.. +|.
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-------------------~~~ 70 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID-------------------GAT 70 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE-------------------EEE
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC-------------------CCe
Confidence 478999999999 899999999999999999999999888889999999999 6533 699
Q ss_pred eeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeecCCCCCC---------hHHHhhhc-CC
Q 040810 214 YQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGLGRGRLS---------FPTQTGRR-FN 280 (480)
Q Consensus 214 y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S---------l~~ql~~~-~~ 280 (480)
|.+.|++|+...|.+++|+|+|++..++++.|||++...+.+ ...+||||||++.++ +.++|.++ ..
T Consensus 71 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~i~~ 150 (323)
T 1izd_A 71 WSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSE 150 (323)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSS
T ss_pred EEEEcCCCCeEEEEEEEEEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHhccC
Confidence 999999999777999999999999999999999999876544 367999999998765 45666655 57
Q ss_pred CcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 281 RKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 281 ~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
++||+||.+. . .|.|+||++| +.|++.|+|+... ..||.|.|++|+||+ .+. .....+
T Consensus 151 ~~FS~~L~~~--~--~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~~-----------~~~~~a 211 (323)
T 1izd_A 151 PIFAVALKHN--A--PGVYDFGYTDSSKYTGSITYTDVDNS---QGFWGFTADGYSIGS-DSS-----------SDSITG 211 (323)
T ss_dssp SEEEEECCTT--S--CEEEEESSCCTTSEEEEEEEEECBCT---TSSCEEEESEEEETT-EEE-----------CCCEEE
T ss_pred cEEEEEccCC--C--CCEEEECCcCccccccceEEEECCCC---CceEEEEECeEEECC-ccc-----------CCCceE
Confidence 9999999863 2 7999999999 4589999999743 579999999999999 443 224579
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCC
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSG 437 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g 437 (480)
||||||++++||+++|++|.+++.++. .....+. |.++|. ..+|+|+|+|+|++++||+++|+++.. ++
T Consensus 212 iiDSGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g~------~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~-~~ 280 (323)
T 1izd_A 212 IADTGTTLLLLDDSIVDAYYEQVNGAS--YDSSQGG------YVFPSS--ASLPDFSVTIGDYTATVPGEYISFADV-GN 280 (323)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE------EEEETT--CCCCCEEEEETTEEEEECHHHHEEEEC-ST
T ss_pred EEeCCCcceeCCHHHHHHHHHhCCCcE--EcCcCCE------EEEECC--CCCceEEEEECCEEEecCHHHeEEecC-CC
Confidence 999999999999999999998885321 1111222 334444 378999999999999999999998764 36
Q ss_pred cEEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 438 TFCFA-FAGTM-SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 438 ~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
..|++ |.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 281 ~~C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 281 GQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp TEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 78985 77763 4689999999999999999999999999864
No 27
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-54 Score=443.82 Aligned_cols=310 Identities=23% Similarity=0.419 Sum_probs=248.8
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+..|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+.. +|.|
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~----~~~f~~~~SsT~~~~-------------------~~~~ 68 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI----DTYFDTERSSTYRSK-------------------GFDV 68 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB----SCCCCGGGCTTCEEE-------------------EEEE
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc----ccCcccccCccceeC-------------------CceE
Confidence 46899999999999999999999999999999999766 578999999999987 5899
Q ss_pred eeeeCCCceeEEEEEEEEEEECCee-ee-eEEEEEEecCCCCc---cCCceEeecCCCCCC--------hHHHhhhc--C
Q 040810 215 QVSYGDGSITVGDFSTETLTFRGTR-VA-RVALGCGHDNEGLF---VAAAGLLGLGRGRLS--------FPTQTGRR--F 279 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~~~-v~-~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S--------l~~ql~~~--~ 279 (480)
.+.|++|+. .|.+++|+|+|++.. +. .+.|+|..+..+.| ...+||||||++.++ +..+|.++ .
T Consensus 69 ~i~Yg~Gs~-~G~~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i 147 (383)
T 2ewy_A 69 TVKYTQGSW-TGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANI 147 (383)
T ss_dssp EEECSSCEE-EEEEEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTC
T ss_pred EEEECCcEE-EEEEEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCC
Confidence 999999997 599999999997532 22 46788887665555 357999999998764 34455544 4
Q ss_pred CCcEEEEeccC-----CCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCC
Q 040810 280 NRKFSYCLVDR-----STSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDP 351 (480)
Q Consensus 280 ~~~FS~~L~~~-----~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~ 351 (480)
.++||+||... ......|.|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+. ++...+
T Consensus 148 ~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~-~~~~~~---- 218 (383)
T 2ewy_A 148 PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEILKLEIGGQSLN-LDCREY---- 218 (383)
T ss_dssp CSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEEEEEETTEECC-CCTTTT----
T ss_pred CcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEEEEEECCEEcc-cccccc----
Confidence 68999999642 112227999999998 679999999986 4699999999999999887 665443
Q ss_pred CCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCC-CC--CccccccccCCCcccccceEEEEEcCe------EE
Q 040810 352 AGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAP-DF--SLFDTCFDLSGKTEVKVPTVVLHFRGA------DV 422 (480)
Q Consensus 352 ~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~-~~--~~~~~Cy~~~~~~~~~~P~lt~~F~G~------~~ 422 (480)
....+||||||++++||+++|++|++++.+.... +... ++ .....|+..+......+|+|+|+|+|. ++
T Consensus 219 -~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~ 296 (383)
T 2ewy_A 219 -NADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI-PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRI 296 (383)
T ss_dssp -TSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS-SCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEE
T ss_pred -CCccEEEEcCCccccCCHHHHHHHHHHHhhhccc-ccCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEE
Confidence 1357999999999999999999999999886431 1111 11 123468876544445799999999964 79
Q ss_pred EECCCCcEEEecC--CCcEEEE--EEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 423 SLPATNYLIPVDS--SGTFCFA--FAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 423 ~l~~~~yl~~~~~--~g~~Cl~--~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+||+++|+++... .+..|++ +.+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 297 ~l~~~~yi~~~~~~~~~~~C~~~~i~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 297 TILPQLYIQPMMGAGLNYECYRFGISPS-TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp EECHHHHEEEECCCTTCSEEEEESEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred EEChHHheeecccCCCCceeEEEEecCC-CCcEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 9999999998742 3568985 4443 457999999999999999999999999999994
No 28
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=4.5e-55 Score=440.06 Aligned_cols=293 Identities=20% Similarity=0.343 Sum_probs=245.6
Q ss_pred CceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCce
Q 040810 134 GSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCL 213 (480)
Q Consensus 134 ~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 213 (480)
.+.+|+++|.|| ||++.|+|||||+++||+|.+|..|.++.++.|||++|+ ++.. +|.
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-------------------~~~ 70 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS-------------------GYT 70 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE-------------------EEE
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC-------------------CCe
Confidence 478999999999 999999999999999999999999988889999999998 6543 699
Q ss_pred eeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCc---cCCceEeecCCCCCC---------hHHHhhhc-CC
Q 040810 214 YQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLF---VAAAGLLGLGRGRLS---------FPTQTGRR-FN 280 (480)
Q Consensus 214 y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S---------l~~ql~~~-~~ 280 (480)
|.+.|++|+...|.+++|+|+|++..++++.|||++...+.+ ...+||||||++.++ +..+|.++ ..
T Consensus 71 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~ 150 (323)
T 1bxo_A 71 WSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQ 150 (323)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGGBSS
T ss_pred EEEEeCCCCeEEEEEEEEEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHhcCC
Confidence 999999999777999999999999999999999999876544 367999999997654 45666655 57
Q ss_pred CcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcE
Q 040810 281 RKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGV 357 (480)
Q Consensus 281 ~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~ 357 (480)
++||+||.+. . .|.|+||++| +.|++.|+|+..+ ..||.|.|++|+||+ +. . ....+
T Consensus 151 ~~FS~~L~~~--~--~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~--~~--~---------~~~~a 210 (323)
T 1bxo_A 151 PLFAVALKHQ--Q--PGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS--QS--G---------DGFSG 210 (323)
T ss_dssp SEEEEECCSS--S--CEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT--EE--E---------EEEEE
T ss_pred cEEEEEEeCC--C--CceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC--cc--C---------CCceE
Confidence 9999999863 2 7999999999 6799999999753 578999999999999 22 1 13469
Q ss_pred EEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCC
Q 040810 358 IIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSG 437 (480)
Q Consensus 358 iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g 437 (480)
||||||++++||+++|++|.+++.++. .....+. |.++|. ..+|+|+|+|+|++++||+++|+++...++
T Consensus 211 iiDSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g~------~~~~C~--~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~ 280 (323)
T 1bxo_A 211 IADTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAGG------YVFDCS--TNLPDFSVSISGYTATVPGSLINYGPSGDG 280 (323)
T ss_dssp EECTTCSSEEECHHHHHHHHTTSTTCE--EETTTTE------EEECTT--CCCCCEEEEETTEEEEECHHHHEEEECSSS
T ss_pred EEeCCCCceeCCHHHHHHHHHhCCCce--EcCcCCE------EEEECC--CCCceEEEEECCEEEEECHHHeEEeccCCC
Confidence 999999999999999999999884432 1111222 334454 378999999999999999999998765334
Q ss_pred cEEEE-EEecC-CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 438 TFCFA-FAGTM-SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 438 ~~Cl~-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
..|++ |.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 281 ~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 281 STCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp SCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 78985 77653 4689999999999999999999999999874
No 29
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=2.2e-54 Score=452.02 Aligned_cols=302 Identities=17% Similarity=0.254 Sum_probs=255.6
Q ss_pred CceecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCC
Q 040810 122 GFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKL 201 (480)
Q Consensus 122 ~~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~ 201 (480)
....|+.+. .+.+|+++|.||||||++.|++||||+++||+|.+|....|+.++.|||++|+||+..
T Consensus 126 ~~~~pL~n~---~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~---------- 192 (451)
T 3qvc_A 126 FDNVELKDL---ANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKD---------- 192 (451)
T ss_dssp -CCCCGGGG---BCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE----------
T ss_pred CCccceeec---CCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccC----------
Confidence 345677653 3689999999999999999999999999999999996433356789999999999986
Q ss_pred CCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEec----CCCCc--cCCceEeecCCCCC------
Q 040810 202 DSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHD----NEGLF--VAAAGLLGLGRGRL------ 269 (480)
Q Consensus 202 ~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~----~~~~~--~~~~GIlGLG~~~~------ 269 (480)
+|.|.+.|++|+ ..|.+++|+|+|++..++ +.|||++. ..+ | ...+||||||++.+
T Consensus 193 ---------~~~f~i~YgdGs-~~G~~~~Dtv~igg~~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~~~s~~~~~ 260 (451)
T 3qvc_A 193 ---------DTPVKLTSKAGT-ISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGWKDLSIGSID 260 (451)
T ss_dssp ---------EEEEEEECSSEE-EEEEEEEEEEEETTEEEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSSBCSSSSCCC
T ss_pred ---------CCEEEEEECCCE-EEEEEEEEEEEECCEEEE-EEEEEEEeccccCCC-ccCCCCCEEEecCCCcccccCCC
Confidence 589999999999 569999999999999999 99999998 666 5 46799999999875
Q ss_pred ChHHHhhhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeeccee
Q 040810 270 SFPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGIT 343 (480)
Q Consensus 270 Sl~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~ 343 (480)
+++.+|.++ ..++||+||.+.... .|.|+||++| +.|++.|+|+.. +.||.|.|+ |+||++ ..
T Consensus 261 ~~~~~L~~qg~I~~~~FS~~L~~~~~~--~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~l~-I~Vgg~-~~--- 329 (451)
T 3qvc_A 261 PYIVELKTQNKIEQAVYSIYLPPENKN--KGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVDLD-VHFGNV-SS--- 329 (451)
T ss_dssp CHHHHHHHTTSSSSSEEEEECCTTCTT--EEEEEESSCCGGGEEEEEEEEECSS----TTSSEEEEE-EEETTE-EE---
T ss_pred CHHHHHHHcCCCCCCEEEEEEcCCCCC--CCEEEECCcchhhcCCceEEEEccc----CCeeEEEEE-EEECCc-cC---
Confidence 467788776 578999999987433 7999999999 568999999985 579999999 999988 21
Q ss_pred ccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEE
Q 040810 344 ASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVS 423 (480)
Q Consensus 344 ~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~ 423 (480)
....+||||||++++||++++++|.+++.+... ... .+|.++|. ...+|+|+|+|+|++++
T Consensus 330 ---------~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~---~~~------g~y~v~C~-~~~~P~itf~fgg~~i~ 390 (451)
T 3qvc_A 330 ---------KKANVILDSATSVITVPTEFFNQFVESASVFKV---PFL------SLYVTTCG-NTKLPTLEYRSPNKVYT 390 (451)
T ss_dssp ---------EEEEEEECTTBSSEEECHHHHHHHHTTTTCEEC---TTS------SCEEEETT-CTTCCCEEEEETTEEEE
T ss_pred ---------CCceEEEeCCCccccCCHHHHHHHHHHcCCeec---CCC------CeEEeeCC-cCcCCcEEEEECCEEEE
Confidence 134699999999999999999999998865421 111 24566776 56899999999999999
Q ss_pred ECCCCcEEEecC-CCcEEE-EEEecC--CCceeecHhhhcceEEEEECCCCEEEEeeCC
Q 040810 424 LPATNYLIPVDS-SGTFCF-AFAGTM--SGLSIIGNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 424 l~~~~yl~~~~~-~g~~Cl-~~~~~~--~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
||+++|+++... ++..|+ +|.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 391 lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 391 LEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp ECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999999998753 357897 788765 5689999999999999999999999999975
No 30
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=2.9e-54 Score=445.87 Aligned_cols=311 Identities=24% Similarity=0.439 Sum_probs=250.5
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+.. .|.|
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~----~~~y~~~~SsT~~~~-------------------~~~~ 76 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL----HRYYQRQLSSTYRDL-------------------RKGV 76 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC----SCCCCGGGCTTCEEE-------------------EEEE
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc----cCCcCcccCCCceeC-------------------CceE
Confidence 57899999999999999999999999999999998655 578999999999987 5899
Q ss_pred eeeeCCCceeEEEEEEEEEEEC-Ceeee-eEEEEEEecCCCCc---cCCceEeecCCCCCC--------hHHHhhhc--C
Q 040810 215 QVSYGDGSITVGDFSTETLTFR-GTRVA-RVALGCGHDNEGLF---VAAAGLLGLGRGRLS--------FPTQTGRR--F 279 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g-~~~v~-~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S--------l~~ql~~~--~ 279 (480)
.+.|++|+. .|.+++|+|+|+ +..++ .+.|++..+..+.| ...+||||||++.++ ++.+|.++ .
T Consensus 77 ~i~Yg~Gs~-~G~~~~Dtv~ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i 155 (395)
T 2qp8_A 77 YVPYTQGKW-EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 155 (395)
T ss_dssp EEECSSCEE-EEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC
T ss_pred EEEECCcEE-EEEEEeEEEEECCCCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHHHHHHccCC
Confidence 999999998 599999999998 55444 36788887665555 367999999998764 45577665 4
Q ss_pred CCcEEEEeccCCC--------CCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccc
Q 040810 280 NRKFSYCLVDRST--------SAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFK 348 (480)
Q Consensus 280 ~~~FS~~L~~~~~--------~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~ 348 (480)
.++||+||.+..- ....|.|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+. ++...+.
T Consensus 156 ~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~-~~~~~~~ 230 (395)
T 2qp8_A 156 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLK-MDCKEYN 230 (395)
T ss_dssp CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECC-CCGGGGG
T ss_pred cceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEEEEEEECCEEcc-cCccccC
Confidence 5899999975310 0127999999998 568999999986 4699999999999999987 7665442
Q ss_pred cCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCC--CccccccccCCCcccccceEEEEEcCe------
Q 040810 349 LDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDF--SLFDTCFDLSGKTEVKVPTVVLHFRGA------ 420 (480)
Q Consensus 349 ~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~--~~~~~Cy~~~~~~~~~~P~lt~~F~G~------ 420 (480)
...+||||||++++||+++|++|++++.+.........++ .....|+..+......+|+|+|+|+|.
T Consensus 231 -----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~ 305 (395)
T 2qp8_A 231 -----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSF 305 (395)
T ss_dssp -----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEE
T ss_pred -----CceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEEEEEccCCCCceE
Confidence 3579999999999999999999999998864311100111 113468876544445799999999964
Q ss_pred EEEECCCCcEEEecC---CCcEEE--EEEecCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 421 DVSLPATNYLIPVDS---SGTFCF--AFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 421 ~~~l~~~~yl~~~~~---~g~~Cl--~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+++|+|++|+++... ....|+ ++.+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 306 ~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~-~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 369 (395)
T 2qp8_A 306 RITILPQQYLRPVEDVATSQDDCYKFAISQS-STGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 369 (395)
T ss_dssp EEEECHHHHEEEECCTTCCSCEEEEECEEEE-SSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred EEEECHHHhEeecccCCCCCceEEEEEecCC-CCcEEEChHHhCCeeEEEECCCCEEEEEeccCC
Confidence 799999999998753 235897 45544 357999999999999999999999999999995
No 31
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.7e-53 Score=441.16 Aligned_cols=312 Identities=24% Similarity=0.422 Sum_probs=249.6
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+.+|+++|.||||||++.|+|||||+++||+|.+| | +.++.|||++|+||+.. .|.|
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~--~~~~~y~~~~SsT~~~~-------------------~~~~ 83 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--P--FLHRYYQRQLSSTYRDL-------------------RKGV 83 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--T--TCSCCCCGGGCTTCEEE-------------------EEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--C--cccCCcCcccCcccccC-------------------CCEE
Confidence 46899999999999999999999999999999988 4 45789999999999987 5999
Q ss_pred eeeeCCCceeEEEEEEEEEEEC-Ceeeee-EEEEEEecCCCCc---cCCceEeecCCCCCC--------hHHHhhhc--C
Q 040810 215 QVSYGDGSITVGDFSTETLTFR-GTRVAR-VALGCGHDNEGLF---VAAAGLLGLGRGRLS--------FPTQTGRR--F 279 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g-~~~v~~-~~fG~~~~~~~~~---~~~~GIlGLG~~~~S--------l~~ql~~~--~ 279 (480)
.+.|++|+. .|.+++|+|+|+ +..+.. +.|+|.....+.| ...+||||||++.++ ++.+|.++ .
T Consensus 84 ~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i 162 (402)
T 3vf3_A 84 YVPYTQGKW-EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162 (402)
T ss_dssp EEECSSCEE-EEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC
T ss_pred EEEECcEEE-EEEEEEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCC
Confidence 999999997 699999999998 444443 4588887765554 467999999997654 55677765 4
Q ss_pred CCcEEEEeccCC----C----CCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccc
Q 040810 280 NRKFSYCLVDRS----T----SAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFK 348 (480)
Q Consensus 280 ~~~FS~~L~~~~----~----~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~ 348 (480)
.++||+||.+.. . ....|.|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+. ++...+
T Consensus 163 ~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~-~~~~~~- 236 (402)
T 3vf3_A 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLK-MDCKEY- 236 (402)
T ss_dssp CSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEEEEEETTEECC-CCGGGG-
T ss_pred ccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEeEEEECCEEec-cccccc-
Confidence 589999997531 0 1227999999999 568999999986 5799999999999999987 765543
Q ss_pred cCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCC--ccccccccCCCcccccceEEEEEcCe------
Q 040810 349 LDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFS--LFDTCFDLSGKTEVKVPTVVLHFRGA------ 420 (480)
Q Consensus 349 ~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~--~~~~Cy~~~~~~~~~~P~lt~~F~G~------ 420 (480)
....+||||||++++||+++|++|++++.+.....+...+.+ .+..|+.........+|+|+|+|+|.
T Consensus 237 ----~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~ 312 (402)
T 3vf3_A 237 ----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSF 312 (402)
T ss_dssp ----GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEE
T ss_pred ----CCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCceE
Confidence 235799999999999999999999999998743111112211 24568876544445799999999965
Q ss_pred EEEECCCCcEEEecCC---CcEEEEEEe-cCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 421 DVSLPATNYLIPVDSS---GTFCFAFAG-TMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 421 ~~~l~~~~yl~~~~~~---g~~Cl~~~~-~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+++|++++|+++.... ...|++|.. ...+.||||++|||++|+|||++++|||||+++|+
T Consensus 313 ~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 313 RITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp EEEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred EEEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 5999999999987542 248986422 13467999999999999999999999999999996
No 32
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=3.6e-53 Score=445.32 Aligned_cols=312 Identities=24% Similarity=0.424 Sum_probs=252.0
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
+.+|+++|.||||+|++.|+|||||+++||+|.+| | +.++.|||++|+||+.. +|.|
T Consensus 73 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c--~~~~~y~~~~SsT~~~~-------------------~~~~ 129 (455)
T 3lpj_A 73 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--P--FLHRYYQRQLSSTYRDL-------------------RKGV 129 (455)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--T--TCSCCCCGGGCTTCEEE-------------------EEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--c--ccCCcccCCCCCCcccC-------------------CccE
Confidence 46899999999999999999999999999999988 5 45789999999999987 5899
Q ss_pred eeeeCCCceeEEEEEEEEEEECC-eeee-eEEEEEEecCCCCc---cCCceEeecCCCCCC--------hHHHhhhc--C
Q 040810 215 QVSYGDGSITVGDFSTETLTFRG-TRVA-RVALGCGHDNEGLF---VAAAGLLGLGRGRLS--------FPTQTGRR--F 279 (480)
Q Consensus 215 ~~~Ygdgs~~~G~~~~Dtvt~g~-~~v~-~~~fG~~~~~~~~~---~~~~GIlGLG~~~~S--------l~~ql~~~--~ 279 (480)
.+.|++|+. .|.+++|+|+|++ ..+. .+.|+|++...+.| ...+||||||++.++ ++.+|.++ .
T Consensus 130 ~i~Yg~Gs~-~G~~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i 208 (455)
T 3lpj_A 130 YVPYTQGKW-EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 208 (455)
T ss_dssp EEECSSCEE-EEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC
T ss_pred EEEeCCeEE-EEEEEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCC
Confidence 999999998 5999999999984 3332 36789988766555 467999999998654 55677765 4
Q ss_pred CCcEEEEeccCCC--------CCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccc
Q 040810 280 NRKFSYCLVDRST--------SAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFK 348 (480)
Q Consensus 280 ~~~FS~~L~~~~~--------~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~ 348 (480)
.++||+||.+... ....|.|+||++| +.|++.|+|+.. ..||.|.|++|+||++.+. ++...+
T Consensus 209 ~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~-~~~~~~- 282 (455)
T 3lpj_A 209 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLK-MDCKEY- 282 (455)
T ss_dssp CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECC-CCGGGG-
T ss_pred CceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEEeEEEECCEEcc-cccccc-
Confidence 5899999975310 1127999999999 568999999986 5799999999999999987 765543
Q ss_pred cCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCC--CccccccccCCCcccccceEEEEEcCe------
Q 040810 349 LDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDF--SLFDTCFDLSGKTEVKVPTVVLHFRGA------ 420 (480)
Q Consensus 349 ~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~--~~~~~Cy~~~~~~~~~~P~lt~~F~G~------ 420 (480)
....+||||||++++||+++|++|++++.+.....+...++ ..+..|+.........+|+|+|+|+|.
T Consensus 283 ----~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~ 358 (455)
T 3lpj_A 283 ----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSF 358 (455)
T ss_dssp ----GSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEE
T ss_pred ----CCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCceE
Confidence 24579999999999999999999999999874311111111 124568876544445699999999965
Q ss_pred EEEECCCCcEEEecCC---CcEEEEEEec-CCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 421 DVSLPATNYLIPVDSS---GTFCFAFAGT-MSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 421 ~~~l~~~~yl~~~~~~---g~~Cl~~~~~-~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
+++|++++|+++.... ...|++|... ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 359 ~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 422 (455)
T 3lpj_A 359 RITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 422 (455)
T ss_dssp EEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred EEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEecccc
Confidence 5999999999987643 2589864322 3467999999999999999999999999999995
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=7.7e-53 Score=426.73 Aligned_cols=298 Identities=20% Similarity=0.345 Sum_probs=243.3
Q ss_pred eecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCC
Q 040810 124 SSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDS 203 (480)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~ 203 (480)
++|+.+. +.+|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++.
T Consensus 4 ~~~l~n~----~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~~-------------- 55 (340)
T 1wkr_A 4 SVPATNQ----LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSAT-------------- 55 (340)
T ss_dssp EEEEEEC----SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEEE--------------
T ss_pred cEeeecc----CcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCcccc--------------
Confidence 4677653 469999999999999999999999999999864 479998887652
Q ss_pred CCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCCCh------------
Q 040810 204 SGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRLSF------------ 271 (480)
Q Consensus 204 ~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~Sl------------ 271 (480)
.|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+ |...+||||||++.+++
T Consensus 56 -------~~~~~i~Yg~Gs~-~G~~~~Dtv~~g~~~v~~~~fg~~~~~~~-~~~~~GilGLg~~~~s~~~~~~~~~~~~~ 126 (340)
T 1wkr_A 56 -------SDKVSVTYGSGSF-SGTEYTDTVTLGSLTIPKQSIGVASRDSG-FDGVDGILGVGPVDLTVGTLSPHTSTSIP 126 (340)
T ss_dssp -------EEEEEEECSSCEE-EEEEEEEEEEETTEEEEEEEEEEEEEEES-CTTCSEEEECSCGGGGTTSEESCTTCCCC
T ss_pred -------CceEEEEECCcEE-EEEEEEEEEEECCEEEcceEEEEEEccCC-CcCCCcEEECCccccccccccccccccCC
Confidence 5899999999985 59999999999999999999999998765 55789999999987643
Q ss_pred --HHHhhhc---CCCcEEEEeccCCC-CCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECC-eeecc
Q 040810 272 --PTQTGRR---FNRKFSYCLVDRST-SAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGG-AHVRG 341 (480)
Q Consensus 272 --~~ql~~~---~~~~FS~~L~~~~~-~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg-~~~~~ 341 (480)
+.+|.++ ..++||+||.+..+ ....|.|+||++| +.|++.|+|+..++....||.|. .+|+|++ +.+.
T Consensus 127 ~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~- 204 (340)
T 1wkr_A 127 TVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSIL- 204 (340)
T ss_dssp CHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEE-
T ss_pred CHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEcc-
Confidence 5566654 46899999986422 1127999999999 67999999999865446799999 9999998 7664
Q ss_pred eeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeE
Q 040810 342 ITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGAD 421 (480)
Q Consensus 342 i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~ 421 (480)
. ...+||||||++++||+++|++|.+++.+... ...+ +|.++|.....+|+|+|+|+|.+
T Consensus 205 ~-----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~---~~~g------~~~~~C~~~~~~p~i~f~f~g~~ 264 (340)
T 1wkr_A 205 S-----------STAGIVDTGTTLTLIASDAFAKYKKATGAVAD---NNTG------LLRLTTAQYANLQSLFFTIGGQT 264 (340)
T ss_dssp E-----------EEEEEECTTBCSEEECHHHHHHHHHHHTCEEC---TTTS------SEEECHHHHHTCCCEEEEETTEE
T ss_pred C-----------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEc---CCCC------eEEeeccccccCCcEEEEECCEE
Confidence 1 13699999999999999999999988865422 1111 35556655567999999999999
Q ss_pred EEECCCCcEEEecC------CCcEEE-EEEecC-----CCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 040810 422 VSLPATNYLIPVDS------SGTFCF-AFAGTM-----SGLSIIGNIQQQGFRVVYDLAASRIGFAPRGCA 480 (480)
Q Consensus 422 ~~l~~~~yl~~~~~------~g~~Cl-~~~~~~-----~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C~ 480 (480)
++|++++|+++... ....|+ +|.+.. +..||||++|||++|+|||++++|||||+++|+
T Consensus 265 ~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 265 FELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp EEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred EEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 99999999987542 124575 776531 236999999999999999999999999999985
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=2.8e-42 Score=332.32 Aligned_cols=221 Identities=23% Similarity=0.406 Sum_probs=186.8
Q ss_pred eecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC---CCCCCCCCCCCCCCCCCccccCCCCcccCC
Q 040810 124 SSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK---KCYSQTDPVFDPAKSRSFATVPCRSPLCRK 200 (480)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~---~C~~~~~~~fdps~SsT~~~~~C~~~~C~~ 200 (480)
.+|+.+. .+++|+++|.||||+|++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 4 ~~~l~n~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~--------- 69 (239)
T 1b5f_A 4 VVALTND---RDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACR--AHSMYESSDSSTYKEN--------- 69 (239)
T ss_dssp EEEEEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHH--TSCCBCGGGCTTCEEE---------
T ss_pred eeeeeec---CCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccC--CCCCCCCccCCCeeeC---------
Confidence 4566553 3689999999999999999999999999999999997 465 4689999999999987
Q ss_pred CCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC--hHHHh
Q 040810 201 LDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS--FPTQT 275 (480)
Q Consensus 201 ~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S--l~~ql 275 (480)
+|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+. | ..++||||||++.++ +..+|
T Consensus 70 ----------~~~~~i~Yg~Gs~-~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~l 138 (239)
T 1b5f_A 70 ----------GTFGAIIYGTGSI-TGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYNM 138 (239)
T ss_dssp ----------EEEEEEECSSCEE-EEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHHH
T ss_pred ----------CcEEEEEECCCcE-EEEEEEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccccHHHHHH
Confidence 5899999999986 599999999999999999999999976542 3 467999999999987 33455
Q ss_pred hhc---CCCcEEEEeccCCCCCCCcEEEeccCC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceecccccc
Q 040810 276 GRR---FNRKFSYCLVDRSTSAKPSSMVFGDSA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKL 349 (480)
Q Consensus 276 ~~~---~~~~FS~~L~~~~~~~~~g~L~fG~~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~ 349 (480)
.++ ..++||+||.+.......|.|+||++| +.|++.|+|+.. ..||.|.|++|+|+++.+. ++.
T Consensus 139 ~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~~~----- 208 (239)
T 1b5f_A 139 LNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKSTG-FCA----- 208 (239)
T ss_dssp HHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEECC-TTT-----
T ss_pred HHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEEec-ccC-----
Confidence 554 468999999875322237999999998 468999999986 4699999999999998875 432
Q ss_pred CCCCCCcEEEcccCcceeeCHHHHHHHHHHHHh
Q 040810 350 DPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRA 382 (480)
Q Consensus 350 ~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~ 382 (480)
....+||||||++++||+++|++|.+++.+
T Consensus 209 ---~~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 209 ---PGCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp ---TCEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred ---CCCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 245799999999999999999999998854
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=1.2e-36 Score=293.21 Aligned_cols=219 Identities=21% Similarity=0.361 Sum_probs=177.9
Q ss_pred CCeeeeeEEEEEEecCCCC-c--cCCceEeecCCCCCC------hHHHhhhc---CCCcEEEEeccCCCCCCCcEEEecc
Q 040810 236 RGTRVARVALGCGHDNEGL-F--VAAAGLLGLGRGRLS------FPTQTGRR---FNRKFSYCLVDRSTSAKPSSMVFGD 303 (480)
Q Consensus 236 g~~~v~~~~fG~~~~~~~~-~--~~~~GIlGLG~~~~S------l~~ql~~~---~~~~FS~~L~~~~~~~~~g~L~fG~ 303 (480)
|+.+++++.|||++...+. | ...+||||||++.++ ++.+|.++ ..++||+||.+.......|.|+||+
T Consensus 1 gg~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg 80 (241)
T 1lya_B 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG 80 (241)
T ss_dssp CCEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETS
T ss_pred CCeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECC
Confidence 4678999999999988663 3 468999999998765 55677765 5799999998864332379999999
Q ss_pred CC---CCCCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHH
Q 040810 304 SA---VSRTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAF 380 (480)
Q Consensus 304 ~d---~~g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l 380 (480)
+| +.|++.|+|+.. +.||.|.|++|+|+++.+. . .....+||||||+++++|+++|++|.+++
T Consensus 81 ~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~-~---------~~~~~aiiDSGTt~~~lP~~~~~~l~~~~ 146 (241)
T 1lya_B 81 TDSKYYKGSLSYLNVTR----KAYWQVHLDQVEVASGLTL-C---------KEGCEAIVDTGTSLMVGPVDEVRELQKAI 146 (241)
T ss_dssp CCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTSCEE-S---------TTCEEEEECTTCSSEEECHHHHHHHHHHH
T ss_pred cCHHHcCCceEEEECcc----ccEEEEEEeEEEECCeeEe-c---------cCCCEEEEECCCccccCCHHHHHHHHHHh
Confidence 99 568999999985 5799999999999998642 1 23457999999999999999999999999
Q ss_pred HhhhccCCcCCCCCccccccccCCCcccccceEEEEEcCeEEEECCCCcEEEecCC-CcEEE-EEEec-----CCCceee
Q 040810 381 RAGASSLKRAPDFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSS-GTFCF-AFAGT-----MSGLSII 453 (480)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~-g~~Cl-~~~~~-----~~~~~Il 453 (480)
.+... ..+ .|.++|.....+|+|+|+|+|++++||+++|+++.... +..|+ +|.+. ..+.|||
T Consensus 147 ~~~~~----~~g------~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~il 216 (241)
T 1lya_B 147 GAVPL----IQG------EYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWIL 216 (241)
T ss_dssp TCEEE----ETT------EEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEE
T ss_pred CCeec----cCC------cEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEe
Confidence 65421 122 23445554568999999999999999999999987642 46898 68875 2468999
Q ss_pred cHhhhcceEEEEECCCCEEEEeeCC
Q 040810 454 GNIQQQGFRVVYDLAASRIGFAPRG 478 (480)
Q Consensus 454 G~~fl~~~yvvfD~~~~rIGFa~~~ 478 (480)
|++|||++|+|||++++|||||+++
T Consensus 217 G~~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 217 GDVFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp CHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred chHHhcceEEEEECCCCEEEEEEcC
Confidence 9999999999999999999999974
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.87 E-value=1.4e-22 Score=166.80 Aligned_cols=89 Identities=27% Similarity=0.639 Sum_probs=78.9
Q ss_pred eecccccccCCceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCC----CCCCCCCCCCCCCCCCCccccCCCCcccC
Q 040810 124 SSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCK----KCYSQTDPVFDPAKSRSFATVPCRSPLCR 199 (480)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~----~C~~~~~~~fdps~SsT~~~~~C~~~~C~ 199 (480)
..|+.+. .+.+|+++|.||||||++.|+|||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 4 ~~~l~n~---~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~--~~~~y~p~~SsT~~~~-------- 70 (97)
T 1lya_A 4 PEVLKNY---MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW--IHHKYNSDKSSTYVKN-------- 70 (97)
T ss_dssp EEEEEEE---TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHH--TSCCBCGGGCTTCEEE--------
T ss_pred eEeeEEC---CCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccC--CCCCCCchhCCCceeC--------
Confidence 4566542 4689999999999999999999999999999999997 575 4689999999999987
Q ss_pred CCCCCCCCCCCCceeeeeeCCCceeEEEEEEEEEEECC
Q 040810 200 KLDSSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRG 237 (480)
Q Consensus 200 ~~~~~~C~~~~~~~y~~~Ygdgs~~~G~~~~Dtvt~g~ 237 (480)
.|.|.+.|++|+. .|.+++|+|+|++
T Consensus 71 -----------~~~~~i~Yg~Gs~-~G~~~~Dtv~i~g 96 (97)
T 1lya_A 71 -----------GTSFDIHYGSGSL-SGYLSQDTVSVPC 96 (97)
T ss_dssp -----------EEEEEEECSSCEE-EEEEEEEEEEESC
T ss_pred -----------CCcEEEEECCcEE-EEEEEEEEEEECC
Confidence 5999999999995 5999999999975
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.69 E-value=4.6e-17 Score=131.12 Aligned_cols=79 Identities=23% Similarity=0.495 Sum_probs=67.4
Q ss_pred cccCCCcccccceEEEEEcCeEEEECCCCcEEEecCC-CcEEE-EEEec----CCCceeecHhhhcceEEEEECCCCEEE
Q 040810 400 FDLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSS-GTFCF-AFAGT----MSGLSIIGNIQQQGFRVVYDLAASRIG 473 (480)
Q Consensus 400 y~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~-g~~Cl-~~~~~----~~~~~IlG~~fl~~~yvvfD~~~~rIG 473 (480)
|.++|+....+|+|+|+|+|++++|++++|+++.... +..|+ +|++. ..+.||||++|||++|+|||++++|||
T Consensus 3 y~v~C~~~~~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riG 82 (87)
T 1b5f_B 3 LQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVG 82 (87)
T ss_dssp CEECGGGGGGCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEE
T ss_pred EEEECCCCCcCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEE
Confidence 4556766678999999999999999999999987642 36898 68864 245799999999999999999999999
Q ss_pred EeeCC
Q 040810 474 FAPRG 478 (480)
Q Consensus 474 Fa~~~ 478 (480)
||+++
T Consensus 83 fA~~~ 87 (87)
T 1b5f_B 83 FAEAA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99874
No 38
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=92.59 E-value=0.26 Score=42.69 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=62.6
Q ss_pred eEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhcc-CC-cCCCCCccccccc
Q 040810 324 FYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGASS-LK-RAPDFSLFDTCFD 401 (480)
Q Consensus 324 ~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~~-~~-~~~~~~~~~~Cy~ 401 (480)
.++|+ +.|+|+.+. ++||||.+.+.++.+..+.+- +...... .. .+.+.... .+
T Consensus 24 ~l~v~---~~Ing~~v~----------------~LVDTGAs~s~Is~~~A~rlG--L~~~~~~~~~~~a~g~G~~-~~-- 79 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK----------------AFVDSGAQMTIMSQACAERCN--IMRLVDRRWAGVAKGVGTQ-RI-- 79 (148)
T ss_dssp CCEEE---EEETTEEEE----------------EEECTTCSSCEEEHHHHHHTT--CGGGEEGGGCEECCC---C-EE--
T ss_pred EEEEE---EEECCEEEE----------------EEEeCCCCcEeeCHHHHHHcC--CccccCcceeEEEEcCCcc-EE--
Confidence 45555 457888776 899999999999998877761 1000000 00 00110000 00
Q ss_pred cCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcEE-EEEEecCCCceeecHhhhcceEEEEECCCCEEEEee
Q 040810 402 LSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTFC-FAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAP 476 (480)
Q Consensus 402 ~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~C-l~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~ 476 (480)
...++...+.+++..+. | +.+.....-..|||.-+|+.+-.+.|++++++-|..
T Consensus 80 -----~g~v~~~~I~Ig~~~~~----------------~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 80 -----IGRVHLAQIQIEGDFLQ----------------CSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp -----EEEEEEEEEEETTEEEE----------------EEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred -----EEEEEEEEEEECCEEEE----------------EEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 01233344555543321 3 223333233589999999999999999999998764
No 39
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.19 Score=43.26 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=56.7
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
.+.+++++.|+ ++++.+++|||++.+-+.-.-...+.- .+..+ ..+
T Consensus 24 ~~~~~v~v~In--G~~~~~LvDTGAs~s~is~~~a~~lgl--~~~~~------------------------------~~~ 69 (148)
T 2i1a_A 24 VPMLYINIEIN--NYPVKAFVDTGAQTTIMSTRLAKKTGL--SRMID------------------------------KRF 69 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHHHHHHHTG--GGGCB------------------------------CCC
T ss_pred cceEEEEEEEC--CEEEEEEEECCCCccccCHHHHHHcCC--CccCC------------------------------cce
Confidence 57889999999 889999999999998885332111210 00000 111
Q ss_pred e-eeeCCCc-eeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCCChHHHhh
Q 040810 215 Q-VSYGDGS-ITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRLSFPTQTG 276 (480)
Q Consensus 215 ~-~~Ygdgs-~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~Sl~~ql~ 276 (480)
. ..+|.|. ...|..-.+.+.+|+..++ +.|.+.. . +.+||||+. ++.++.
T Consensus 70 ~~~a~g~g~~~~~~~~~~~~i~ig~~~~~-~~~~vl~--~----~~d~iLG~d-----~L~~~~ 121 (148)
T 2i1a_A 70 IGEARGVGTGKIIGRIHQAQVKIETQYIP-CSFTVLD--T----DIDVLIGLD-----MLKRHL 121 (148)
T ss_dssp C-----------CEEEEEEEEEETTEEEE-EEEEEEC--S----SCSEEECHH-----HHHHTT
T ss_pred EEEEecCCCcccccEEEEEEEEECCEEec-eeEEEec--C----CCCeEecHH-----HHhhCC
Confidence 1 1223222 1236666778999998865 6676654 2 468999976 555543
No 40
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.45 Score=40.79 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=60.3
Q ss_pred eeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHHHHHHHHHHHhhhc-cCC-cCCCCCcccccc
Q 040810 323 TFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRAGAS-SLK-RAPDFSLFDTCF 400 (480)
Q Consensus 323 ~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~l~~~~~-~~~-~~~~~~~~~~Cy 400 (480)
+.++|. +.|+|+.+. ++||||.+.+.++.+..+.+- +..... ... .+.+.... .+
T Consensus 25 ~~~~v~---v~InG~~~~----------------~LvDTGAs~s~is~~~a~~lg--l~~~~~~~~~~~a~g~g~~-~~- 81 (148)
T 2i1a_A 25 PMLYIN---IEINNYPVK----------------AFVDTGAQTTIMSTRLAKKTG--LSRMIDKRFIGEARGVGTG-KI- 81 (148)
T ss_dssp CCCEEE---EEETTEEEE----------------EEECTTCSSCEEEHHHHHHHT--GGGGCBCCCC-------------
T ss_pred ceEEEE---EEECCEEEE----------------EEEECCCCccccCHHHHHHcC--CCccCCcceEEEEecCCCc-cc-
Confidence 345555 678888665 799999999999988766542 111000 000 00110000 00
Q ss_pred ccCCCcccccceEEEEEcCeEEEECCCCcEEEecCCCcEEEEEEecCCCceeecHhhhcceEEEEECCCCEEEEe
Q 040810 401 DLSGKTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFA 475 (480)
Q Consensus 401 ~~~~~~~~~~P~lt~~F~G~~~~l~~~~yl~~~~~~g~~Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa 475 (480)
........+.+++..+.++ +.+.+ .+-..|||.-||+.+-+..|+.+++|-|.
T Consensus 82 ------~~~~~~~~i~ig~~~~~~~---------------~~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 82 ------IGRIHQAQVKIETQYIPCS---------------FTVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp ------CEEEEEEEEEETTEEEEEE---------------EEEEC-SSCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred ------ccEEEEEEEEECCEEecee---------------EEEec-CCCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 0112223455555442210 11222 12358999999999999999999999885
No 41
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=85.94 E-value=1.7 Score=37.37 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=66.1
Q ss_pred ceeEEEEEEecCCCcEEEEEEECCCCceEEecCCCCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCCCCCCCCCcee
Q 040810 135 SGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDSSGCNRRNTCLY 214 (480)
Q Consensus 135 ~~~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~y 214 (480)
..-|++++.|. .+++.+++|||++.+.+.-.-...|.-. ..-+ ..+
T Consensus 22 ~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~~A~rlGL~--~~~~------------------------------~~~ 67 (148)
T 3s8i_A 22 VTMLYINCKVN--GHPLKAFVDSGAQMTIMSQACAERCNIM--RLVD------------------------------RRW 67 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHHHHHHTTCG--GGEE------------------------------GGG
T ss_pred cCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHHHHHHcCCc--cccC------------------------------cce
Confidence 35789999998 8999999999999999865432233210 0000 001
Q ss_pred e-eeeCC-CceeEEEEEEEEEEECCeeeeeEEEEEEecCCCCccCCceEeecCCCCCChHHHhhhcCCCcEEEEeccCCC
Q 040810 215 Q-VSYGD-GSITVGDFSTETLTFRGTRVARVALGCGHDNEGLFVAAAGLLGLGRGRLSFPTQTGRRFNRKFSYCLVDRST 292 (480)
Q Consensus 215 ~-~~Ygd-gs~~~G~~~~Dtvt~g~~~v~~~~fG~~~~~~~~~~~~~GIlGLG~~~~Sl~~ql~~~~~~~FS~~L~~~~~ 292 (480)
. ...+- +....|..-...+.+++..++ ..|...... ..++|||+- ++.+++ .++.-.
T Consensus 68 ~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~-~~~~Vle~~-----~~d~LLGmD-----~L~~~~--------~~ID~~-- 126 (148)
T 3s8i_A 68 AGVAKGVGTQRIIGRVHLAQIQIEGDFLQ-CSFSILEDQ-----PMDMLLGLD-----MLRRHQ--------CSIDLK-- 126 (148)
T ss_dssp CEECCC---CEEEEEEEEEEEEETTEEEE-EEEEEETTC-----SSSEEECHH-----HHHHTT--------CEEETT--
T ss_pred eEEEEcCCccEEEEEEEEEEEEECCEEEE-EEEEEeCCC-----CcCeeccHH-----HHHhCC--------EEEEcC--
Confidence 1 11222 223357777788999988763 455544322 358999986 455443 122222
Q ss_pred CCCCcEEEeccC
Q 040810 293 SAKPSSMVFGDS 304 (480)
Q Consensus 293 ~~~~g~L~fG~~ 304 (480)
.+.|+|+..
T Consensus 127 ---~~~L~l~~~ 135 (148)
T 3s8i_A 127 ---KNVLVIGTT 135 (148)
T ss_dssp ---TTEEECTTT
T ss_pred ---CCEEEEccC
Confidence 688888864
No 42
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=83.98 E-value=0.96 Score=36.57 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.8
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEe
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQ 165 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~ 165 (480)
-++.|.|| .|.+.+++|||.|++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 36789999 899999999999999997
No 43
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=83.90 E-value=1.2 Score=35.67 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.6
Q ss_pred EEEEEecCCCcEEEEEEECCCCceEEecCC
Q 040810 139 FTRLGVGTPPRYVYMVLDTGSDVVWIQCAP 168 (480)
Q Consensus 139 ~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~ 168 (480)
++.|.|| .|.+.+++|||.|++-+.-..
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~ 37 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMS 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEeccc
Confidence 6789999 899999999999999996543
No 44
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=79.72 E-value=2 Score=34.37 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.0
Q ss_pred EEEEEecCCCcEEEEEEECCCCceEEecC
Q 040810 139 FTRLGVGTPPRYVYMVLDTGSDVVWIQCA 167 (480)
Q Consensus 139 ~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~ 167 (480)
++.|.|| +|.+.+++|||.|++-+.-.
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 6789999 89999999999999999544
No 45
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=78.34 E-value=2 Score=35.08 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=26.2
Q ss_pred EEEEEec---CCCcEEEEEEECCCCceEEecCCC
Q 040810 139 FTRLGVG---TPPRYVYMVLDTGSDVVWIQCAPC 169 (480)
Q Consensus 139 ~~~i~iG---TP~q~~~~ivDTGS~~~Wv~~~~C 169 (480)
.+.|.|| +|+|.+..++|||-|++-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 5666676 789999999999999999987654
No 46
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=74.32 E-value=2.7 Score=34.62 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEecC
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQCA 167 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~ 167 (480)
=++ |.|| .|.+.+++|||.|++-+.-.
T Consensus 15 P~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 15 EIL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred CEE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 355 9999 89999999999999999743
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=67.80 E-value=5.1 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.5
Q ss_pred EEEEEecCCCcEEEEEEECCCCceEEecCCC
Q 040810 139 FTRLGVGTPPRYVYMVLDTGSDVVWIQCAPC 169 (480)
Q Consensus 139 ~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~~C 169 (480)
.+.|.|| .|.+.+++|||-|++-+.-...
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 6789999 8999999999999999976544
No 48
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=62.41 E-value=9.4 Score=30.02 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=23.3
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
+..|+++ |.|| .|++.| .++||||++.+++|..
T Consensus 12 ~~~Y~~~---i~iG------TP~Q~~--------~v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 12 DAQYYGE---IGIG------TPPQCF--------TVVFDTGSSNLWVPSI 44 (97)
T ss_dssp TTEEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEBT
T ss_pred CCeEEEE---EEEC------CCCeEE--------EEEEeCCCCceEEeEc
Confidence 4567765 6776 233333 3899999999999964
No 49
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=54.89 E-value=13 Score=31.23 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=24.9
Q ss_pred eEEEEEEecCCCcEEEEEEECCCCceEEecC
Q 040810 137 EYFTRLGVGTPPRYVYMVLDTGSDVVWIQCA 167 (480)
Q Consensus 137 ~Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~~ 167 (480)
.-++.+.|+ .|.+.+++|||.+++-+.-.
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 347789999 89999999999999999644
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=51.72 E-value=13 Score=30.78 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.0
Q ss_pred ecCCCcEEEEEEECCCCceEEecCCC
Q 040810 144 VGTPPRYVYMVLDTGSDVVWIQCAPC 169 (480)
Q Consensus 144 iGTP~q~~~~ivDTGS~~~Wv~~~~C 169 (480)
|| .|.+.+++|||-|++-+.-...
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEEDW 50 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTTS
T ss_pred CC--CEEEEEEecCCCCcEEEecccC
Confidence 66 6888999999999999986543
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=51.15 E-value=12 Score=33.82 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEec
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQC 166 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~ 166 (480)
-.+.|.|| .|.+.+++|||.|++-+.-
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 36789999 8999999999999999953
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=42.97 E-value=23 Score=34.04 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=28.0
Q ss_pred CeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 309 TARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 309 ~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
.+...|+.. ...|+++ |+||.+.+. ++||||++.+++|..
T Consensus 5 ~v~~~~~~~----~~~Y~~~---i~iG~Q~~~----------------v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 5 VATNTPTAN----DEEYITP---VTIGGTTLN----------------LNFDTGSADLWVFST 44 (323)
T ss_dssp EEEEEECGG----GSCEEEE---EEETTEEEE----------------EEEETTCCCEEECBT
T ss_pred ceeeeecCC----CCEEEEE---EEECCEEEE----------------EEEeCCCcceEEecC
Confidence 344555543 4567765 678855544 899999999999975
No 53
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=41.26 E-value=25 Score=33.71 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=28.1
Q ss_pred CeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHH
Q 040810 309 TARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPA 372 (480)
Q Consensus 309 ~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~ 372 (480)
.+...|+.. ...|+++ |+||.+.+. ++||||++.+++|..-
T Consensus 5 ~v~~~~~~~----~~~Y~~~---i~iG~q~~~----------------v~~DTGSs~lWv~~~~ 45 (323)
T 1izd_A 5 SVTTNPTSN----DEEYITQ---VTVGDDTLG----------------LDFDTGSADLWVFSSQ 45 (323)
T ss_dssp EEEEEECGG----GCCEEEE---EEETTEEEE----------------EEEETTCCCEEECBTT
T ss_pred ceeeeEcCC----CCEEEEE---EEECCEEEE----------------EEEcCCCcceEEecCC
Confidence 344455542 4567765 778855443 8999999999999753
No 54
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=41.25 E-value=30 Score=33.71 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 308 RTARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 308 g~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
|.+...|+... ....|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 5 g~~~~~~l~~~--~~~~Y~~~---i~iG------tP~q~~--------~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 5 GSVDTPGLYDF--DLEEYAIP---VSIG------TPGQDF--------YLLFDTGSSDTWVPHK 49 (361)
T ss_dssp CCEEEEEEEET--TTTEEEEE---EEET------TTTEEE--------EEEEETTCCCCEEEBT
T ss_pred CccceEEeecC--CCCEEEEE---EEEC------CCCcEE--------EEEEcCCCCCeEECCC
Confidence 45666777652 24577765 6787 222222 3899999999999964
No 55
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=39.44 E-value=25 Score=33.71 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=24.2
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRPA 372 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~ 372 (480)
...|+++ |+||.+.+. ++||||++.+++|..-
T Consensus 13 ~~~Y~~~---i~iG~Q~~~----------------v~~DTGSs~lWv~~~~ 44 (325)
T 1ibq_A 13 DEEYLTP---VTVGKSTLH----------------LDFDTGSADLWVFSDE 44 (325)
T ss_dssp TSCEEEE---EEEBTEEEE----------------EEEETTCCCEEEECTT
T ss_pred CCEEEEE---EEECCEEEE----------------EEEeCCCccceEeeCC
Confidence 4567765 678755544 8999999999999753
No 56
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=39.09 E-value=30 Score=33.10 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=28.7
Q ss_pred CeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 309 TARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 309 ~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
++...||... .+..|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 2 ~~~~~~l~n~--~~~~Y~~~---i~iG------tP~q~~--------~v~~DTGSs~~Wv~~~ 45 (323)
T 3cms_A 2 EVASVPLTNY--LDSQYFGK---IYLG------TPPQEF--------TVLFDTGSSDFWVPSI 45 (323)
T ss_dssp CCEEEEEEEE--TTTEEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEBT
T ss_pred CcceeeeEec--cCCEEEEE---EEEC------CCCeEE--------EEEEeCCccceEEcCC
Confidence 4455666542 24567765 6777 233333 3899999999999964
No 57
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=32.03 E-value=36 Score=30.63 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEEEEEecCCCcEEEEEEECCCCceEEec
Q 040810 138 YFTRLGVGTPPRYVYMVLDTGSDVVWIQC 166 (480)
Q Consensus 138 Y~~~i~iGTP~q~~~~ivDTGS~~~Wv~~ 166 (480)
-.+.+.|| .|.+.+++|||.|++-+..
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEE 139 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeec
Confidence 47889999 8999999999999999953
No 58
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=30.99 E-value=41 Score=30.71 Aligned_cols=33 Identities=39% Similarity=0.637 Sum_probs=22.9
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
+..|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 12 ~~~Y~~~---i~iG------tP~q~~--------~v~~DTGSs~lWv~~~ 44 (239)
T 1b5f_A 12 DTSYFGE---IGIG------TPPQKF--------TVIFDTGSSVLWVPSS 44 (239)
T ss_dssp TTEEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEBT
T ss_pred CCEEEEE---EEEC------CCCeEE--------EEEEeCCCcceEEEcC
Confidence 4567765 6777 233333 3899999999999854
No 59
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=30.16 E-value=47 Score=32.92 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=27.8
Q ss_pred EEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 312 FTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 312 ~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
..||..+. ....|+++ |.|| .|++.+ .++||||++.+++|..
T Consensus 11 ~~pl~~~~-~~~~Y~~~---i~iG------TP~Q~~--------~v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 11 VLPVQNDG-STGLHWAN---LQKR------TPLMQV--------PVLVDLNGNHLWVNCE 52 (403)
T ss_dssp EEEEEECT-TTCCEEEE---EEET------TTTEEE--------EEEEETTCSSEEEECS
T ss_pred EEeeecCC-CCceEEEE---EECC------CCCcee--------EEEEECCCCceeECCC
Confidence 46766432 24567765 6676 233333 3899999999999854
No 60
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=27.95 E-value=54 Score=31.38 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=23.1
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
+..|+++ |.|| .|++.+ .++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iG------TP~Q~~--------~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 14 DDAYITP---VQIG------TPAQTL--------NLDFDTGSSDLWVFSS 46 (329)
T ss_dssp CCCEEEE---EEET------TTTEEE--------EEEEETTCCCEEECBT
T ss_pred CCEEEEE---EEEC------CCCeEE--------EEEECCCCCCeEEecC
Confidence 4567765 7787 222222 3899999999999964
No 61
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=27.21 E-value=60 Score=31.09 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=25.7
Q ss_pred EecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 313 TPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
.|+... ...|+++ |.|| .|++.+ .++||||++.+++|..
T Consensus 5 ~~l~~~---~~~Y~~~---i~iG------tP~q~~--------~v~~DTGSs~~Wv~~~ 43 (334)
T 1j71_A 5 TTLINE---GPSYAAD---IVVG------SNQQKQ--------TVVIDTGSSDLWVVDT 43 (334)
T ss_dssp EEEEEC---SSSEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEEE
T ss_pred EEEecC---CcEEEEE---EEEc------CCCcEE--------EEEEcCCCCCEEEecC
Confidence 455442 4567775 6776 233333 3899999999999853
No 62
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=26.92 E-value=61 Score=31.01 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=26.4
Q ss_pred EEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 312 FTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 312 ~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
-+|+... ..+|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 4 ~~~l~~~---~~~Y~~~---i~iG------tP~Q~~--------~v~~DTGSs~~Wv~~~ 43 (339)
T 3fv3_A 4 SLSLINE---GPSYASK---VSVG------SNKQQQ--------TVIIDTGSSDFWVVDS 43 (339)
T ss_dssp EEEEEEC---SSSEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEEE
T ss_pred eeEEEcC---CCEEEEE---EEEc------CCCcEE--------EEEEeCCCCceEEecC
Confidence 3455543 4578776 6776 233333 3899999999999843
No 63
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=26.76 E-value=67 Score=30.83 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=22.9
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
...|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 11 ~~~Y~~~---i~iG------tP~q~~--------~v~~DTGSs~~Wv~~~ 43 (342)
T 2qzx_A 11 AITYTAD---ITVG------SDNQKL--------NVIVDTGSSDLWIPDS 43 (342)
T ss_dssp SSCEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEEE
T ss_pred CeEEEEE---EEEC------CCCcEE--------EEEEeCCCCCeEEecC
Confidence 4567765 6777 223322 3899999999999843
No 64
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=26.67 E-value=59 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=23.2
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
...|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iG------TP~Q~~--------~v~~DTGSs~lWv~~~ 46 (329)
T 3c9x_A 14 DSEYITS---VSIG------TPAQVL--------PLDFDTGSSDLWVFSS 46 (329)
T ss_dssp CCCEEEE---EEET------TTTEEE--------EEEEETTCCCEEECBT
T ss_pred CCEEEEE---EEEC------CCCeEE--------EEEEcCCCCCeEEecC
Confidence 4567765 7787 223322 3899999999999975
No 65
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=26.56 E-value=58 Score=31.26 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=25.1
Q ss_pred EecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCH
Q 040810 313 TPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370 (480)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~ 370 (480)
+||... ...|+++ |+|| .|++.+ .++||||++.+++|.
T Consensus 5 ~~l~n~---~~~Y~~~---i~iG------TP~q~~--------~v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 5 VPATNQ---LVDYVVN---VGVG------SPATTY--------SLLVDTGSSNTWLGA 42 (340)
T ss_dssp EEEEEC---SSCEEEE---EEET------TTTEEE--------EEEEETTCCCCEECS
T ss_pred Eeeecc---CcEEEEE---EEEC------CCCcEE--------EEEEeCCChhheecC
Confidence 455432 3467765 6777 223322 389999999999985
No 66
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=26.50 E-value=57 Score=32.55 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=31.0
Q ss_pred CeEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCH
Q 040810 309 TARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370 (480)
Q Consensus 309 ~~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~ 370 (480)
.....|+.++. ....|+++ |+|| .|++.| .++||||+.++++|-
T Consensus 7 ~~~~~pv~~d~-~~~~Y~~~---i~iG------TPpq~~--------~v~~DTGS~~lWv~c 50 (413)
T 3vla_A 7 SALVVPVKKDA-STLQYVTT---INQR------TPLVSE--------NLVVDLGGRFLWVDC 50 (413)
T ss_dssp SEEEEEEEECT-TTCCEEEE---EEET------TTTEEE--------EEEEETTCSSEEEEC
T ss_pred ccEEEEeeecC-CCCeEEEE---EEcC------CCCcce--------EEEEeCCChhhhccc
Confidence 44567888775 35567766 5666 344444 489999999999995
No 67
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=25.79 E-value=66 Score=30.70 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=23.0
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
...|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iG------TP~q~~--------~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 14 DIEYYGQ---VTIG------TPGKKF--------NLDFDTGSSDLWIAST 46 (325)
T ss_dssp TTEEEEE---EEET------TTTEEE--------EEEEETTCCCCEEEBT
T ss_pred CCEEEEE---EEEC------CCCeEE--------EEEEcCCCCCEEEccC
Confidence 4567765 6787 223222 3899999999999864
No 68
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=24.92 E-value=72 Score=30.34 Aligned_cols=33 Identities=39% Similarity=0.568 Sum_probs=23.3
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
+..|+++ |+||. |++.+ .++||||++.+++|..
T Consensus 11 ~~~Y~~~---i~iGt------P~q~~--------~v~~DTGSs~~Wv~~~ 43 (324)
T 1am5_A 11 DTEYYGV---ISIGT------PPESF--------KVIFDTGSSNLWVSSS 43 (324)
T ss_dssp TTEEEEE---EEETT------TTEEE--------EEEEETTCCCEEECBT
T ss_pred CCEEEEE---EEECC------CCeEE--------EEEEeCCCcceEEecC
Confidence 4567766 66762 33333 3899999999999964
No 69
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=23.72 E-value=66 Score=30.77 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=23.1
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
..+|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 11 ~~~Y~~~---i~iG------tP~q~~--------~v~~DTGSs~~Wv~~~ 43 (342)
T 3pvk_A 11 QVTYAAD---ITVG------SNNQKL--------NVIVDTGSSDLWVPDV 43 (342)
T ss_dssp SSSEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEEE
T ss_pred CcEEEEE---EEEc------CCCcEE--------EEEEECCCcceEEEcC
Confidence 4578776 6776 233333 3899999999999853
No 70
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=22.89 E-value=43 Score=32.82 Aligned_cols=42 Identities=36% Similarity=0.454 Sum_probs=28.2
Q ss_pred eEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCH
Q 040810 310 ARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTR 370 (480)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~ 370 (480)
+...||... .+..|+++ |+|| .|++.| .++||||++.+++|.
T Consensus 45 ~~~~~l~n~--~d~~Y~~~---i~iG------TPpQ~~--------~v~~DTGSs~lWV~s 86 (370)
T 3psg_A 45 IGDEPLENY--LDTEYFGT---IGIG------TPAQDF--------TVIFDTGSSNLWVPS 86 (370)
T ss_dssp SCCCTTGGG--TTCCEEEE---EEET------TTTEEE--------EEEEETTCCCEEEEB
T ss_pred cceecceec--cCCEEEEE---EEEc------CCCCEE--------EEEEeCCCCccEEEC
Confidence 445565532 24567766 6776 344444 389999999999996
No 71
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=22.77 E-value=80 Score=30.09 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.7
Q ss_pred EEEcccCcceeeCHH
Q 040810 357 VIIDSGTSVTRLTRP 371 (480)
Q Consensus 357 ~iiDSGTt~t~Lp~~ 371 (480)
++||||++.+++|..
T Consensus 30 v~~DTGSs~lWv~~~ 44 (329)
T 1dpj_A 30 VILDTGSSNLWVPSN 44 (329)
T ss_dssp EEEETTCCCEEEEBT
T ss_pred EEEeCCCcCeEEecC
Confidence 899999999999864
No 72
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=21.96 E-value=86 Score=29.91 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=27.9
Q ss_pred eEEEecccCCCCCeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 310 ARFTPLLANPKLDTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
....||... .+..|+++ |.||. |++.+ .++||||++.+++|..
T Consensus 7 ~~~~~l~n~--~d~~Y~~~---i~iGt------P~q~~--------~v~~DTGSs~~Wv~~~ 49 (341)
T 3k1w_A 7 TSSVILTNY--MDTQYYGE---IGIGT------PPQTF--------KVVFDTGSSNVWVPSS 49 (341)
T ss_dssp CEEEEEEEE--TTTEEEEE---EEETT------TTEEE--------EEEEETTCCCEEEEBT
T ss_pred CccccceEc--cCCEEEEE---EEEcC------CCcEE--------EEEEeCCCcceEEccC
Confidence 345566542 24567765 67773 33333 3899999999999864
No 73
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=21.51 E-value=64 Score=30.56 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=23.4
Q ss_pred CeeEEEEEeeEEECCeeecceeccccccCCCCCCcEEEcccCcceeeCHH
Q 040810 322 DTFYYVELVGISVGGAHVRGITASLFKLDPAGNGGVIIDSGTSVTRLTRP 371 (480)
Q Consensus 322 ~~~y~v~l~gisVgg~~~~~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~ 371 (480)
+..|+++ |+|| .|++.+ .++||||++.+++|..
T Consensus 10 d~~Y~~~---i~iG------tP~Q~~--------~v~~DTGSs~~Wv~~~ 42 (320)
T 4aa9_A 10 DSQYFGK---IYIG------TPPQEF--------TVVFDTGSSDLWVPSI 42 (320)
T ss_dssp CCCCEEE---EEET------TTTEEE--------EEEEETTCCCEEEEBT
T ss_pred CCEEEEE---EEEC------CCCeEE--------EEEEeCCCCceEEcCC
Confidence 4567766 6776 233333 3899999999999864
Done!