BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040811
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 163/241 (67%), Gaps = 21/241 (8%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPP 60
E+WT++EHDKFLEAL LFDRDWKKI+ FVGSKTVIQIRSHAQKYFLKVQKNGT H+PPP
Sbjct: 62 ENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPPP 121
Query: 61 RPKRKAAHPYPQKASKNVLPPLQAAMAYPSV-NALAHGFAAWDDASMLVNAEKMMPSQDK 119
RPKRKA HPYPQKA K L A + + N +H + LV+ + +PS
Sbjct: 122 RPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPS--- 178
Query: 120 YTNLHAIEADDIGSKGISGIGNSTVGGIGSSTRTQPSTDMPKQGNQVPVL---HGI-PDF 175
++ ++ G+S ST SS+R + T + + N H + P+F
Sbjct: 179 -----SVIKEEF---GVSENCCST-----SSSRDKQRTRIVTETNDQESCGKPHRVAPNF 225
Query: 176 AEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLSLNLSSPDFEPIRNVLSSYD 235
AEVY+FIGSVFDP T GHV++LKEMDPIN ETVLLLM+NLS+NL+SP+F+ R ++SSY+
Sbjct: 226 AEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYN 285
Query: 236 A 236
A
Sbjct: 286 A 286
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 128/237 (54%), Gaps = 17/237 (7%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPP 60
E+WTDEEH KFLEAL LFDRDWKKIE FVGSKTVIQIRSHAQKYF+KVQKN T +PPP
Sbjct: 42 ENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGERIPPP 101
Query: 61 RPKRKAAHPYPQKASKN----VLPPLQAAMAYPSVNALAHGFAAWDDASMLVNAEKMMPS 116
RPKRK+ PYPQK + +P + + S + FA W + +MP+
Sbjct: 102 RPKRKSIQPYPQKQKHDGMGAFIPDSLSGNHFIS----SSSFATW------MTYRGLMPN 151
Query: 117 -QDKYTNLHAIEADDIGSKGISGIGNSTVGGIGSSTRTQPSTDMPKQGNQVPVLHGIPDF 175
+ N ++ + V SS R P N L P+F
Sbjct: 152 ISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPPNPSSNNGGTTL--TPNF 209
Query: 176 AEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLSLNLSSPDFEPIRNVLS 232
++Y+F+ ++F+ + + L ++ I+ ET+ +LM NL++NL++ + LS
Sbjct: 210 PKIYAFLSNLFESNGTSFTEALSDLSMIDRETMQILMHNLAINLANQQYRDNHQTLS 266
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPP 60
E WT++EH++FLEAL+L+ R W++IE+ +G+KT +QIRSHAQK+F K++K + +P
Sbjct: 25 ERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVC 84
Query: 61 RP----------KRKAAHPYPQKASKNVLPPLQAAMAYPSVNALAHGFAAWDDASMLVNA 110
+ KRK PYP+K N Q + A + L ++ ++
Sbjct: 85 QALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDA--KLVSSASSSQLNQAFLDL 142
Query: 111 EKMMPSQDKYTNLHAIEADDIG----------SKGISG-IGNSTVGGIGSSTRTQPSTDM 159
EKM S+ T + + G +K +SG I S + ++ + P +
Sbjct: 143 EKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSGDIETSKTSTVDNAVQDVPKKNK 202
Query: 160 PKQGNQVPVLHGIPDF 175
K GN +H + ++
Sbjct: 203 DKDGNDGTTVHSMQNY 218
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 43/50 (86%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50
E WT+EEH++F+EAL+L+ R W+KIE+ V +KT +QIRSHAQK+F KV+K
Sbjct: 25 ERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEK 74
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 42/51 (82%)
Query: 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52
SWT EE F+EA +L+D+D KKI++ V +KT++Q+RSHAQK+ LK++KNG
Sbjct: 152 SWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNG 202
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 3 WTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKV-QKNG 52
W++EEH+ FL+A++ + R +WK I + S+ +QI++HA+ YF K+ Q+NG
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNG 283
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 1 ESWTDEEHDKFLEALQLFDRD-WKKIEDFVGSKTVIQIRSHAQKYFLK 47
+ WT EEH +FL +Q+ + WK+I FVG++T QI+SHAQKY+L+
Sbjct: 377 QGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLR 424
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRP 62
WT EE + F + L F R W KI +GS+TV+Q++S+A++YF KN + P
Sbjct: 121 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF----KNKVKCGLDKETP 176
Query: 63 KRKAAHPY----PQKASKNVLPPLQAAMAYPSVNAL 94
+K H K +K P A P++NA+
Sbjct: 177 NQKTGHNLQVKNEDKGTKAWTPSCLRGRADPNLNAV 212
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 3 WTDEEHDKFLEALQLF-DRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50
WT EEH +F+EAL + +D K I +V ++ Q+R+HAQKYFL++ +
Sbjct: 175 WTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDR 223
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN 51
WT EE + F + L + R W KI +GS+TV+Q++S+A++YF KN
Sbjct: 122 WTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKNKAKN 170
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 3 WTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIA 55
WT EEH+KFLEA+Q F +D+ I FV ++ Q+R+H Y LK QK A
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTY-LKNQKKAEAA 709
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 45
W +EE + F + L F R W KI +G++TV+Q++S+A++YF
Sbjct: 102 WAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYF 144
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 3 WTDEEHDKFLEALQLFDR-DWKKI-EDFVGSKTVIQIRSHAQKYF 45
WT+EEH FL LQ + DW+ I +FV ++T Q+ SHAQKYF
Sbjct: 97 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 3 WTDEEHDKFLEALQLFDR-DWKKI-EDFVGSKTVIQIRSHAQKYFLKVQKNG 52
WT+EEH FL L+ + + DW+ I +FV ++T Q+ SHAQKYF++ G
Sbjct: 134 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGG 185
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRP 62
WT EE + F + L F R W KI + S+TV+Q++S+A++YF KN V P
Sbjct: 118 WTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYF----KNKVKWDVEKETP 173
Query: 63 KRKAA 67
+K++
Sbjct: 174 TQKSS 178
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 45
WT EE + F + L F R W I +GS++V+Q++++A+ YF
Sbjct: 112 WTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYARHYF 154
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 3 WTDEEHDKFLEAL------QLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52
WT EE K + L ++ R W+KI D +G++T Q+ S QKYF+K+ K G
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 710
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 3 WTDEEHDKFLEAL------QLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAH 56
WT EE K + L ++ R W+KI D +G++T Q+ S QKYF+K+ K G
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGI--- 718
Query: 57 VPPPRPKRKA-AHPYPQKASKNVLP-PLQAAMAYPSVNALAH 96
P P R + Y +K+S + PL + PS +H
Sbjct: 719 ---PVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSH 757
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48
++WTD+E LEA++L++ +W +I D VGSK+ Q H FL++
Sbjct: 401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILH----FLRL 444
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV 57
WT EE ++A++++ RD++ I D +G+K+V+Q+++ +F+ ++ I V
Sbjct: 332 WTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKN----FFVNYRRRFNIDQV 382
>sp|Q54YB7|MYBF_DICDI Myb-like protein F OS=Dictyostelium discoideum GN=mybF PE=3 SV=1
Length = 564
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPP 60
WT EE + + E + ++WKKI+ K+ Q+ SH Q Y +K+ K + V P
Sbjct: 417 WTLEEEELYKEVFNHYGKNWKKIKTHFPDKSKSQVTSHGQ-YLIKINKLQDLQKVKSP 473
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV 57
WT EE ++A++ + RD++ I D +G+K+V+Q+++ +F+ ++ I V
Sbjct: 377 WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRRRFNIDEV 427
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV 57
WT EE ++A++ + RD++ I D +G+K+V+Q+++ +F+ ++ I V
Sbjct: 383 WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRRRFNIDEV 433
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 3 WTDEEHDKFLEALQLFDRD----WKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTI--AH 56
WT +++ F +AL +D+D W+ + VG KT +++ H Y L VQ +I H
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRH---YELLVQDINSIENGH 70
Query: 57 VPPP 60
VP P
Sbjct: 71 VPFP 74
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRP 62
WT EE +K + + + WK I KT Q++SH Q Y +++ K I H +
Sbjct: 443 WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQSHGQ-YLIRIGKLEDI-HRDGRKE 500
Query: 63 KRKAAHPYPQKASK 76
+RK ++ +
Sbjct: 501 RRKGKQALQERQQQ 514
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTV 34
W+ EE ++F E + F ++WKK+ FV S++
Sbjct: 47 WSKEELERFYEGYRKFGKEWKKVAGFVHSRSA 78
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFV-GSKTVIQIRSH 40
WTD E LE +++F +W++I D++ GSKT Q +H
Sbjct: 930 WTDIETLLLLEGIEIFRDNWQEISDYIGGSKTPEQCLTH 968
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIR 38
WT+EE + + L R+W I VGSKTV Q +
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 650
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIR 38
WT+EE + + L R+W I VGSKTV Q +
Sbjct: 611 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 646
>sp|Q04850|NTRY_AZOC5 Nitrogen regulation protein NtrY OS=Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / ORS 571) GN=ntrY PE=3
SV=1
Length = 771
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 146 GIGSSTRTQPSTDMPKQGNQVPVLHGIPDFAEVYSFIGSVFDPDTKGHVQKLKE------ 199
IG +T QP +P + V + + D+ ++Y ++ + DP G+++ +E
Sbjct: 225 AIGDATPDQPVIYLPNDADYVAAVVPLKDYDDLYLYVARLIDPRVIGYLKTTQETLADYR 284
Query: 200 ---------------MDPINFETVLLLMRNLSLNLSSPDFEPIRNVLSSYD 235
M + VLL L LN S PIR ++S+ D
Sbjct: 285 SLEERRFGVQVAFALMYAVITLIVLLSAVWLGLNFSKWLVAPIRRLMSAAD 335
>sp|P0C691|DPOL_DHBV3 Protein P OS=Duck hepatitis B virus (strain Germany/DHBV-3) GN=P
PE=1 SV=1
Length = 786
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 156 STDMPKQGNQVPVLHGIPDFAEVYSFIGSVFDPDTK 191
+TD+P+ GN++P H + + +Y G F+P+ K
Sbjct: 73 TTDLPRLGNKLPARHHLGKLSGLYQMKGCTFNPEWK 108
>sp|Q8FS97|RPOB_COREF DNA-directed RNA polymerase subunit beta OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=rpoB PE=3 SV=1
Length = 1171
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 190 TKGHVQKLKEMDPINFETVLLLMRNLSLNLSSPDFEPIRNVLSSYDAKSKTVGVAAGI-- 247
T G L+E+ PI + N+SL+LS P FEP++N + +AK K + AA +
Sbjct: 78 TSGLENILEELSPIQDYS-----GNMSLSLSEPRFEPVKNTID--EAKEKDINYAAPLYV 130
Query: 248 ---VANNQTNDI 256
NN T +I
Sbjct: 131 TAEFVNNTTGEI 142
>sp|Q6P116|RCOR2_DANRE REST corepressor 2 OS=Danio rerio GN=rcor2 PE=2 SV=1
Length = 536
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV 57
WT EE ++A++ + +D+ I D +G+KTV Q+ S +F+ ++ + V
Sbjct: 333 WTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSS----FFVSYRRRFNLEEV 383
>sp|Q5F450|PAN2_CHICK PAB-dependent poly(A)-specific ribonuclease subunit 2 OS=Gallus
gallus GN=PAN2 PE=2 SV=1
Length = 1197
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 82 LQAAMAYPSVNALAHGFAAWDDASMLVNAEKMMPSQDKY--TNLHAIEADDIGSKGISGI 139
L+A P +AL A D+A+ VN +++ S +++ T LH + G + G
Sbjct: 581 LRAFRTIPEASALGLILADSDEATGKVNLGRLIQSWNRFILTQLHQETQEQEGPQAYRGA 640
Query: 140 GNSTVGGIGSSTRTQ 154
G+ST G G S Q
Sbjct: 641 GSSTFGSSGDSVIGQ 655
>sp|P17192|DPOL_HPBDB Protein P OS=Duck hepatitis B virus (isolate brown Shanghai duck
S5) GN=P PE=3 SV=1
Length = 788
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 128 ADDIGSKGISGIGNSTVGGIGSSTRTQPSTDMPKQGNQVPVLHGIPDFAEVYSFIGSVFD 187
+D+ S GI + V S + D+P+ GN++P H + + +Y G F+
Sbjct: 45 GEDVQSPGIGEPLHPNVRAPLSHVVRAATIDLPRLGNKLPAKHHLGKLSGLYQMKGCTFN 104
Query: 188 PDTK 191
P+ K
Sbjct: 105 PEWK 108
>sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2
Length = 1013
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 16 QLFDRD-WKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPP 60
Q+ +RD WK DFVG + + + K F K QKNG+ P
Sbjct: 251 QIIERDGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSSTKTSCP 296
>sp|P79987|HIRA_CHICK Protein HIRA OS=Gallus gallus GN=HIRA PE=1 SV=2
Length = 1019
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 16 QLFDRD-WKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGT 53
Q+ +RD WK DFVG + + + K F K QKNG+
Sbjct: 251 QIIERDGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGS 289
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKT 33
E+W+ E+ K L+ +Q F DW K+ VG+K+
Sbjct: 525 ENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKS 557
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV 57
WT EE ++ ++ + +D++ I D +G+KTV Q+++ +F+ ++ + V
Sbjct: 290 WTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKN----FFVNYRRRFNLEEV 340
>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1
Length = 322
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 112 KMMPSQDKYTNLHAIEADDIGSKGI----SGIGNSTVGGIGSSTRTQPSTDM--PKQGNQ 165
K+ D+YT + + AD++GSK + G+ +V +G +T + S + K GNQ
Sbjct: 17 KLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQ 76
Query: 166 VPVLHGIPDFAEVYSFIGSVFDPDTKGHVQKLKE 199
L+ IP IG+V TKG+++++ E
Sbjct: 77 A-FLNLIP------LLIGNVGLIFTKGYLKEVSE 103
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVG 30
+W+D+E LE +++++ W+KI D VG
Sbjct: 314 NWSDQEMLLLLEGIEMYEDQWEKIADHVG 342
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48
W+++E LEA++ + DW +I VGS+T Q H FL++
Sbjct: 250 WSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIH----FLQI 291
>sp|Q865B6|PRGC1_PIG Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Sus scrofa GN=PPARGC1A PE=2 SV=1
Length = 796
Score = 31.6 bits (70), Expect = 5.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 46 LKVQKNGTIAHVPPPRPKRKAAHPYPQKASKNVLPPLQAAMAYPS 90
L V+ +GT PP P KA P +AS + PP + + PS
Sbjct: 282 LSVELSGTAGLTPPTTPPHKANQDNPFRASPKLKPPCKTVVPPPS 326
>sp|Q7YRU7|DSG3_CANFA Desmoglein-3 OS=Canis familiaris GN=DSG3 PE=2 SV=1
Length = 993
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 154 QPSTDMPKQGNQVPVLHGIPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMR 213
Q +T +P PV HG E YS GS+ P T ++ L + E V+ +
Sbjct: 911 QSATSIPN-----PVQHGSYMVTETYSASGSLVQPTTT-VLEPLLTQNVTVTERVICPIS 964
Query: 214 NLSLNLSSP-DFEPIRNVLSSYDAKSKTV 241
N+S NL +P + RN++ + D S+ +
Sbjct: 965 NVSGNLQTPMELRGSRNMICTEDPCSRLI 993
>sp|P54198|HIRA_HUMAN Protein HIRA OS=Homo sapiens GN=HIRA PE=1 SV=2
Length = 1017
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 16 QLFDRD-WKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPP 60
Q+ +R+ WK DFVG + + + K F K QKNG+ A P
Sbjct: 251 QIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGSSAKPSCP 296
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50
+WT +E + F AL+ ++++KI V SK Q+R + + ++ K
Sbjct: 57 AWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNK 105
>sp|Q02457|TBF1_YEAST Protein TBF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TBF1 PE=1 SV=2
Length = 562
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVG----------SKTVIQIRSHAQKYFLKVQK 50
+W+ EE + +E L+ W KI D G ++T +Q++ A+ + L+ K
Sbjct: 410 RTWSKEEEEALVEGLKEVGPSWSKILDLYGPGGKITENLKNRTQVQLKDKARNWKLQYLK 469
Query: 51 NG 52
+G
Sbjct: 470 SG 471
>sp|Q6GZT5|041R_FRG3G Uncharacterized protein 041R OS=Frog virus 3 (isolate Goorha)
GN=FV3-041R PE=4 SV=1
Length = 1165
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 4 TDEEHDKFLEALQLFDRDWKKIEDFV---GSKTVIQIRSHAQKYFLKVQKNGTIA-HVPP 59
TDE+ + +L++ RD K +E+ + G I R ++ + T+A P
Sbjct: 366 TDEDSGEAYISLRVRARDRKGVEELMEAAGRVMAIYSRRESEIVSFYALYDKTVAKEAAP 425
Query: 60 PRPKRKAAHPYP--QKASKNVLPPLQAAMAYPS 90
PRP RK+ P P KA + +L L + P+
Sbjct: 426 PRPPRKSKAPEPTGDKADRKLLRTLAPDIFLPT 458
>sp|Q8NT26|RPOB_CORGL DNA-directed RNA polymerase subunit beta OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=rpoB PE=3 SV=1
Length = 1165
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 190 TKGHVQKLKEMDPINFETVLLLMRNLSLNLSSPDFEPIRNVLSSYDAKSKTVGVAAGI-- 247
T G L+E+ PI + N+SL+LS P FE ++N + +AK K + AA +
Sbjct: 72 TSGLENILEELSPIQDYS-----GNMSLSLSEPRFEDVKNTID--EAKEKDINYAAPLYV 124
Query: 248 ---VANNQTNDI 256
NN T +I
Sbjct: 125 TAEFVNNTTGEI 136
>sp|A4QBG2|RPOB_CORGB DNA-directed RNA polymerase subunit beta OS=Corynebacterium
glutamicum (strain R) GN=rpoB PE=3 SV=1
Length = 1165
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 190 TKGHVQKLKEMDPINFETVLLLMRNLSLNLSSPDFEPIRNVLSSYDAKSKTVGVAAGI-- 247
T G L+E+ PI + N+SL+LS P FE ++N + +AK K + AA +
Sbjct: 72 TSGLENILEELSPIQDYS-----GNMSLSLSEPRFEDVKNTID--EAKEKDINYAAPLYV 124
Query: 248 ---VANNQTNDI 256
NN T +I
Sbjct: 125 TAEFVNNTTGEI 136
>sp|Q61666|HIRA_MOUSE Protein HIRA OS=Mus musculus GN=Hira PE=1 SV=3
Length = 1015
Score = 30.8 bits (68), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 16 QLFDRD-WKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGT 53
Q+ +R+ WK DFVG + + + K F K QKNG+
Sbjct: 251 QIIEREGWKTNMDFVGHRKAVTVVKFNPKIFKKKQKNGS 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,885,733
Number of Sequences: 539616
Number of extensions: 4067278
Number of successful extensions: 9635
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 9564
Number of HSP's gapped (non-prelim): 99
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)