Query 040811
Match_columns 258
No_of_seqs 218 out of 768
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 12:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.5 1.1E-14 2.5E-19 105.9 5.9 47 1-47 4-56 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.5 8E-14 1.7E-18 96.2 6.1 44 1-44 2-47 (48)
3 KOG0724 Zuotin and related mol 99.2 6.9E-13 1.5E-17 122.6 -0.8 228 2-237 55-310 (335)
4 cd00167 SANT 'SWI3, ADA2, N-Co 99.2 3.7E-11 8E-16 78.3 5.7 43 2-44 1-44 (45)
5 smart00717 SANT SANT SWI3, AD 99.2 6.1E-11 1.3E-15 78.2 6.0 45 1-45 2-47 (49)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.1 9.2E-11 2E-15 83.5 5.0 42 3-44 1-42 (60)
7 KOG0457 Histone acetyltransfer 98.9 1E-09 2.2E-14 106.6 5.9 49 1-49 73-122 (438)
8 PLN03212 Transcription repress 98.7 1.8E-08 3.8E-13 92.4 5.4 45 2-46 27-73 (249)
9 PLN03212 Transcription repress 98.6 2.8E-07 6.2E-12 84.6 9.5 50 1-50 79-128 (249)
10 PLN03091 hypothetical protein; 98.6 6.2E-08 1.3E-12 94.9 4.7 44 2-45 16-61 (459)
11 COG5259 RSC8 RSC chromatin rem 98.5 8.7E-08 1.9E-12 94.4 5.2 41 1-41 280-320 (531)
12 COG5114 Histone acetyltransfer 98.4 4.1E-07 8.9E-12 86.7 7.1 47 1-47 64-111 (432)
13 PLN03091 hypothetical protein; 98.3 9.5E-07 2.1E-11 86.7 6.9 48 1-48 68-115 (459)
14 KOG0048 Transcription factor, 98.3 3.8E-07 8.3E-12 81.9 3.8 46 1-46 10-57 (238)
15 KOG1279 Chromatin remodeling f 98.3 8.7E-07 1.9E-11 88.3 5.3 44 2-49 255-298 (506)
16 KOG0048 Transcription factor, 97.9 1.8E-05 3.9E-10 71.1 6.4 47 1-47 63-109 (238)
17 KOG0049 Transcription factor, 97.7 4.3E-05 9.3E-10 78.5 5.9 48 1-48 361-409 (939)
18 KOG4329 DNA-binding protein [G 96.7 0.002 4.3E-08 62.9 4.9 40 2-41 279-319 (445)
19 KOG4468 Polycomb-group transcr 96.4 0.0045 9.7E-08 63.5 5.4 51 2-52 90-150 (782)
20 KOG4167 Predicted DNA-binding 96.4 0.0047 1E-07 64.5 5.6 43 2-44 621-663 (907)
21 KOG0049 Transcription factor, 96.4 0.0069 1.5E-07 62.8 6.6 44 1-44 413-457 (939)
22 PLN03162 golden-2 like transcr 96.3 0.026 5.5E-07 55.5 9.3 50 2-51 239-293 (526)
23 KOG0050 mRNA splicing protein 96.0 0.0081 1.8E-07 60.8 4.5 45 2-46 9-54 (617)
24 PF13837 Myb_DNA-bind_4: Myb/S 95.9 0.016 3.4E-07 43.5 4.8 47 2-48 3-67 (90)
25 COG5118 BDP1 Transcription ini 95.9 0.012 2.6E-07 57.8 5.2 39 1-39 366-404 (507)
26 KOG0051 RNA polymerase I termi 95.1 0.02 4.4E-07 58.7 3.9 46 2-47 438-509 (607)
27 KOG0051 RNA polymerase I termi 95.1 0.03 6.5E-07 57.5 4.9 45 2-47 386-430 (607)
28 KOG3554 Histone deacetylase co 94.6 0.031 6.7E-07 56.4 3.5 41 1-41 286-327 (693)
29 KOG1194 Predicted DNA-binding 94.1 0.093 2E-06 52.6 5.7 40 2-41 189-228 (534)
30 PLN03142 Probable chromatin-re 93.9 0.12 2.5E-06 56.2 6.4 46 2-47 826-872 (1033)
31 COG5147 REB1 Myb superfamily p 92.9 0.056 1.2E-06 54.7 1.9 47 2-48 22-69 (512)
32 PF13873 Myb_DNA-bind_5: Myb/S 92.7 0.54 1.2E-05 34.8 6.5 49 2-50 4-74 (78)
33 COG5147 REB1 Myb superfamily p 89.7 0.43 9.2E-06 48.5 4.4 50 1-50 73-122 (512)
34 KOG0050 mRNA splicing protein 89.6 0.43 9.4E-06 48.7 4.3 43 2-45 61-103 (617)
35 KOG0724 Zuotin and related mol 88.7 0.28 6.1E-06 45.7 2.3 63 2-71 166-235 (335)
36 TIGR02894 DNA_bind_RsfA transc 88.4 0.86 1.9E-05 40.0 4.9 49 2-51 6-61 (161)
37 PF12776 Myb_DNA-bind_3: Myb/S 87.4 2 4.3E-05 32.5 5.8 43 2-44 1-61 (96)
38 KOG3841 TEF-1 and related tran 85.2 1.3 2.8E-05 43.9 4.7 47 2-48 78-145 (455)
39 KOG4282 Transcription factor G 82.4 4.2 9.2E-05 38.2 6.8 50 1-50 55-118 (345)
40 smart00426 TEA TEA domain. 81.2 2 4.3E-05 32.9 3.3 42 1-42 4-66 (68)
41 PRK13923 putative spore coat p 80.9 2.4 5.3E-05 37.5 4.3 48 1-48 6-59 (170)
42 PF09111 SLIDE: SLIDE; InterP 80.5 5.2 0.00011 33.2 5.9 49 2-50 51-115 (118)
43 PF08914 Myb_DNA-bind_2: Rap1 78.4 3.8 8.2E-05 30.7 4.0 46 2-47 4-59 (65)
44 PF01388 ARID: ARID/BRIGHT DNA 77.6 5.4 0.00012 30.3 4.9 38 10-47 40-90 (92)
45 PF13404 HTH_AsnC-type: AsnC-t 76.0 10 0.00022 25.8 5.3 37 6-43 3-40 (42)
46 PF02954 HTH_8: Bacterial regu 74.8 8.4 0.00018 25.8 4.6 33 6-39 5-37 (42)
47 KOG1878 Nuclear receptor coreg 74.2 1.4 3.1E-05 49.6 1.1 47 6-52 360-406 (1672)
48 KOG2009 Transcription initiati 71.4 3.2 6.8E-05 43.0 2.7 44 1-47 410-453 (584)
49 PF04504 DUF573: Protein of un 71.2 16 0.00035 29.1 6.2 38 2-39 6-56 (98)
50 KOG1194 Predicted DNA-binding 67.6 9 0.0002 39.0 4.9 48 2-49 371-418 (534)
51 PF01285 TEA: TEA/ATTS domain 67.1 4.8 0.0001 40.1 2.9 43 2-44 51-112 (431)
52 smart00501 BRIGHT BRIGHT, ARID 65.0 21 0.00047 27.3 5.6 39 11-49 37-88 (93)
53 PF11035 SnAPC_2_like: Small n 64.7 20 0.00043 35.0 6.4 47 2-48 23-73 (344)
54 PRK11179 DNA-binding transcrip 64.1 15 0.00032 30.7 4.9 42 6-52 9-51 (153)
55 PF06461 DUF1086: Domain of Un 63.6 23 0.0005 30.8 6.1 48 3-50 41-91 (145)
56 PRK11169 leucine-responsive tr 57.8 20 0.00044 30.2 4.8 43 5-52 13-56 (164)
57 KOG0385 Chromatin remodeling c 57.5 18 0.0004 39.2 5.3 50 1-51 796-846 (971)
58 smart00595 MADF subfamily of S 52.2 18 0.00038 27.0 3.1 23 21-44 29-51 (89)
59 PF08281 Sigma70_r4_2: Sigma-7 52.2 53 0.0012 22.2 5.3 36 8-44 15-50 (54)
60 PF10141 ssDNA-exonuc_C: Singl 51.1 15 0.00032 32.2 3.0 40 174-213 99-138 (195)
61 PRK01905 DNA-binding protein F 49.9 50 0.0011 24.8 5.3 34 5-39 36-69 (77)
62 PRK00430 fis global DNA-bindin 48.2 50 0.0011 26.2 5.3 26 6-31 55-80 (95)
63 PLN03142 Probable chromatin-re 47.5 46 0.00099 36.9 6.5 50 2-51 928-990 (1033)
64 PHA00442 host recBCD nuclease 46.3 24 0.00052 26.3 2.9 24 5-28 25-49 (59)
65 smart00344 HTH_ASNC helix_turn 44.9 54 0.0012 25.1 4.9 42 6-52 3-45 (108)
66 KOG2656 DNA methyltransferase 44.6 19 0.00042 36.0 2.9 49 2-50 132-186 (445)
67 PF10440 WIYLD: Ubiquitin-bind 42.7 17 0.00036 27.6 1.7 18 10-27 31-48 (65)
68 cd08780 Death_TRADD Death Doma 41.7 45 0.00098 26.9 4.0 24 4-30 1-24 (90)
69 PF07750 GcrA: GcrA cell cycle 35.4 58 0.0013 28.2 4.1 37 2-39 2-38 (162)
70 PF08074 CHDCT2: CHDCT2 (NUC03 35.1 22 0.00047 31.7 1.5 27 1-27 4-31 (173)
71 KOG0384 Chromodomain-helicase 32.2 28 0.00061 39.4 2.0 48 2-50 1135-1195(1373)
72 cd06171 Sigma70_r4 Sigma70, re 32.0 1.3E+02 0.0028 18.8 5.5 41 3-45 11-51 (55)
73 PF10545 MADF_DNA_bdg: Alcohol 31.8 85 0.0018 22.4 4.0 25 20-44 27-52 (85)
74 PF12451 VPS11_C: Vacuolar pro 31.7 44 0.00095 23.6 2.3 27 5-31 18-44 (49)
75 PF12549 TOH_N: Tyrosine hydro 30.9 25 0.00055 22.2 0.9 21 217-237 3-23 (25)
76 PF06628 Catalase-rel: Catalas 30.0 1.9E+02 0.0042 21.2 5.6 38 3-50 20-57 (68)
77 PF04545 Sigma70_r4: Sigma-70, 29.6 1.8E+02 0.0038 19.5 6.0 43 4-48 6-48 (50)
78 PF13384 HTH_23: Homeodomain-l 28.7 1.1E+02 0.0023 20.3 3.8 35 4-40 3-37 (50)
79 KOG0421 Ubiquitin-protein liga 27.1 47 0.001 29.3 2.1 45 178-222 94-146 (175)
80 cd08312 Death_MyD88 Death doma 25.8 28 0.0006 26.5 0.5 27 10-37 7-33 (79)
81 TIGR03238 dnd_assoc_3 dnd syst 25.3 80 0.0017 32.5 3.7 51 185-235 243-295 (504)
82 KOG1079 Transcriptional repres 24.1 66 0.0014 34.4 2.9 42 2-43 411-452 (739)
83 cd08311 Death_p75NR Death doma 24.0 60 0.0013 24.9 2.0 33 5-39 2-34 (77)
84 PF11626 Rap1_C: TRF2-interact 23.4 47 0.001 25.6 1.3 12 2-13 49-60 (87)
85 PF00191 Annexin: Annexin; In 23.3 1.3E+02 0.0027 21.1 3.5 39 9-47 4-42 (66)
86 KOG0027 Calmodulin and related 22.9 1.8E+02 0.0039 23.8 4.8 63 174-239 29-99 (151)
87 TIGR00695 uxuA mannonate dehyd 21.8 1.5E+02 0.0032 29.6 4.7 52 1-52 38-96 (394)
88 PRK13722 lytic transglycosylas 21.0 1.5E+02 0.0033 26.1 4.2 21 11-31 100-120 (169)
89 PF05263 DUF722: Protein of un 20.8 2.3E+02 0.0049 24.1 5.0 41 3-44 82-123 (130)
90 PRK03906 mannonate dehydratase 20.8 1.5E+02 0.0033 29.1 4.6 50 1-50 38-94 (385)
91 smart00005 DEATH DEATH domain, 20.0 92 0.002 22.9 2.3 23 9-31 6-29 (88)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.54 E-value=1.1e-14 Score=105.91 Aligned_cols=47 Identities=45% Similarity=0.733 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cH---HHHHHHhC-CC-CHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DW---KKIEDFVG-SK-TVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dW---kkIA~~Vg-TR-T~~QcrsHaQkYf~k 47 (258)
..||+|||.+|++||+.||+ +| ++|+++++ ++ |..||+||+||||++
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 36999999999999999997 99 99998776 67 999999999999986
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.48 E-value=8e-14 Score=96.18 Aligned_cols=44 Identities=41% Similarity=0.714 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-HHHHHHHhC-CCCHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 44 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrd-WkkIA~~Vg-TRT~~QcrsHaQkY 44 (258)
..||+||+++|++||.+||.+ |+.||.+|+ +||..||++||++|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 379999999999999999976 999999999 99999999999987
No 3
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.9e-13 Score=122.64 Aligned_cols=228 Identities=21% Similarity=0.165 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc-CC---cCCCCCCCCCCCCCCCcCCCCcCC
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN-GT---IAHVPPPRPKRKAAHPYPQKASKN 77 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~-g~---~~~lP~p~~kR~s~hp~p~k~s~~ 77 (258)
.||.+|+++|.++|..|++.|.+|-++++.++..|++.|+|+||-++.+. +. .+.+|++++++++.|+|+++...+
T Consensus 55 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~ 134 (335)
T KOG0724|consen 55 RRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPD 134 (335)
T ss_pred ccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccccccccccccCCccccccccccCCCCCCcc
Confidence 49999999999999999999999999999999999999999999998774 22 234899999999999999987654
Q ss_pred CCCccccccCCCCcccccCCCCCCCC-ccccccccCCCCChhhhcccccccccccCCCCccCCCCC-----cccCCCCCC
Q 040811 78 VLPPLQAAMAYPSVNALAHGFAAWDD-ASMLVNAEKMMPSQDKYTNLHAIEADDIGSKGISGIGNS-----TVGGIGSST 151 (258)
Q Consensus 78 ~~~~~~~s~~~~s~~~~~p~~~~~~d-~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~s~~~s~~ 151 (258)
-... ............ .......+ .+.......... ..+.. .+. ..++.. ....+..+ +.....+..
T Consensus 135 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~~~~~~-~~~~~~~~~~~~r~~~~~~s~a 207 (335)
T KOG0724|consen 135 EEDS-ENRSQSRYSGGT-QRGKSNAEELRRKGTPVTERE--RKLVL-LAL-KKDGKI-DWRKISQNVEKERTPEQVASHA 207 (335)
T ss_pred cccc-cchhhhhhcccc-cccccchhhhhhccchhHHHH--HHHHH-hhh-cccccc-cceechhhhhhhhcchhhhhhh
Confidence 2110 000000001100 11111111 111111000000 00000 000 000000 00000000 111111111
Q ss_pred C------CCCCCCCCCCCCCCCCCCCCCChHHHHh--hhcccc-----C----CCchhHHHhhhcCCcchHHHHHHHHH-
Q 040811 152 R------TQPSTDMPKQGNQVPVLHGIPDFAEVYS--FIGSVF-----D----PDTKGHVQKLKEMDPINFETVLLLMR- 213 (258)
Q Consensus 152 ~------~~~~~~~~~~~~~~~~~~~~pdFaqVY~--FigsvF-----d----p~~~~hlq~Lk~Mdpi~~eTvlLlmr- 213 (258)
. ........+.....+..++++++++++. |.++++ + |...+|.+.++.|++++.++..+.|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (335)
T KOG0724|consen 208 QEKAFEKALARQKSGEEEKRRKSIEDITTASEAEDRKKEDEAAKEAKKKPRDTPSLKSRNKRLKSFDGIAEESSETEDSL 287 (335)
T ss_pred hhhhhHHHHHHHhhhccccccchhhhhhccchhhhhhcchhhhhhhhccccccccccchhhhcccCCccCCCchhHHHhH
Confidence 1 1111223455667788999999999998 999999 7 88899999999999999999999999
Q ss_pred HhhhhCCCCCchhHHhhhhcccCC
Q 040811 214 NLSLNLSSPDFEPIRNVLSSYDAK 237 (258)
Q Consensus 214 NLs~NL~sp~fe~~~~~ls~y~~~ 237 (258)
|+..+|+++.|++.+.+++. ...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~ 310 (335)
T KOG0724|consen 288 ELVAALSAPMEEPQWELKAA-AGS 310 (335)
T ss_pred HHHHhhhccccccHHHHHhh-ccc
Confidence 89999999999999666555 443
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.20 E-value=3.7e-11 Score=78.32 Aligned_cols=43 Identities=30% Similarity=0.588 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
.||++|+..|+.++.+|| .+|..||+.+++||..||+.||+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999999999999998765
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.18 E-value=6.1e-11 Score=78.16 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||++|+.+|+.++.+|| .+|..||.++++||..||+.||.+++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 3799999999999999999 89999999999999999999987664
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.11 E-value=9.2e-11 Score=83.46 Aligned_cols=42 Identities=36% Similarity=0.693 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
||++|+++|++++.+||.+|+.||+++|.||+.||+.||.++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~ 42 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNH 42 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 7
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.94 E-value=1e-09 Score=106.62 Aligned_cols=49 Identities=33% Similarity=0.605 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
+.||++|+.+||+|++.|| +||..||++||+||.++|+.||.|+|+.-.
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~ 122 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSP 122 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCc
Confidence 4799999999999999999 899999999999999999999999998743
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.70 E-value=1.8e-08 Score=92.38 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVG-SKTVIQIRSHAQKYFL 46 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg-TRT~~QcrsHaQkYf~ 46 (258)
.||+||+++|++++++|| .+|+.||+.++ +||..|||.||.+|+.
T Consensus 27 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 27 PWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhc
Confidence 699999999999999999 59999999886 8999999999999973
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.58 E-value=2.8e-07 Score=84.56 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
+.||+||++++++++..||..|..||.++++||..|||.||..++.+..+
T Consensus 79 gpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred CCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHH
Confidence 47999999999999999999999999999999999999999988776433
No 10
>PLN03091 hypothetical protein; Provisional
Probab=98.55 E-value=6.2e-08 Score=94.89 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhC-CCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVG-SKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg-TRT~~QcrsHaQkYf 45 (258)
.||.||+++|+++|++|| ++|+.||+.++ +||..|||.||.+|+
T Consensus 16 ~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 699999999999999999 59999999887 899999999999876
No 11
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=98.53 E-value=8.7e-08 Score=94.37 Aligned_cols=41 Identities=32% Similarity=0.618 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHA 41 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHa 41 (258)
+.||.+|..+||+||+.||.+|.+||.+||+||++||..|.
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~F 320 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHF 320 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999999963
No 12
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.45 E-value=4.1e-07 Score=86.69 Aligned_cols=47 Identities=30% Similarity=0.651 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
|.|+.+|+.+|+++++..| +||..||.+||+|+.+.||+||.|||..
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 6799999999999999999 8999999999999999999999999874
No 13
>PLN03091 hypothetical protein; Provisional
Probab=98.34 E-value=9.5e-07 Score=86.71 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
+.||.||++++++.+++||..|.+||++|+.||..|||.||.....|.
T Consensus 68 gpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999998876664
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.33 E-value=3.8e-07 Score=81.89 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVG-SKTVIQIRSHAQKYFL 46 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg-TRT~~QcrsHaQkYf~ 46 (258)
.+||.|||+++++.|++|| ++|..|++..| .|+..+||-||.+|+.
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence 3799999999999999999 69999999999 9999999999999963
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=98.28 E-value=8.7e-07 Score=88.32 Aligned_cols=44 Identities=36% Similarity=0.750 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
.||++|..+||+||++||.+|.+||.+||+||..||..| |+++.
T Consensus 255 ~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~k----FL~LP 298 (506)
T KOG1279|consen 255 NWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILK----FLRLP 298 (506)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHH----HHhcC
Confidence 699999999999999999999999999999999999996 55553
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.94 E-value=1.8e-05 Score=71.13 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
+.||+||+++++++-..||..|..||.++++||...|+.||.-...|
T Consensus 63 g~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 63 GNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred CCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999777555
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.74 E-value=4.3e-05 Score=78.48 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
++||.+|+.+++.|+.+|| ++|-+|-+.|++|+..|||.+|.+.+..-
T Consensus 361 g~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred CCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHh
Confidence 5899999999999999999 59999999999999999999988765543
No 18
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=96.73 E-value=0.002 Score=62.85 Aligned_cols=40 Identities=28% Similarity=0.555 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHH-HHhCCCCHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIE-DFVGSKTVIQIRSHA 41 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA-~~VgTRT~~QcrsHa 41 (258)
.|+++|...|.++|+.||+|+..|. ..|.||++..|..+|
T Consensus 279 ~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyY 319 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYY 319 (445)
T ss_pred cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHH
Confidence 5999999999999999999999997 899999999999864
No 19
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=96.44 E-value=0.0045 Score=63.51 Aligned_cols=51 Identities=29% Similarity=0.465 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHH----------HHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKI----------EDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkI----------A~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
.||-.|.+-|-.||++||+|+.+| -.-+..||..|+|.||.+-..++.+.-
T Consensus 90 aWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 90 AWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 599999999999999999999999 355668999999999888777777653
No 20
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=96.42 E-value=0.0047 Score=64.47 Aligned_cols=43 Identities=30% Similarity=0.414 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
.||..|..+|-+||-.|.+|+..|+++|.+||+.||..+|..+
T Consensus 621 ~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 621 KWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999986544
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.40 E-value=0.0069 Score=62.83 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
++||-.|++.++.+|++|| ++|-+||.++|.||..|.+++-..+
T Consensus 413 ~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~ 457 (939)
T KOG0049|consen 413 ERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRL 457 (939)
T ss_pred CceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHH
Confidence 5899999999999999999 6999999999999998877655443
No 22
>PLN03162 golden-2 like transcription factor; Provisional
Probab=96.26 E-value=0.026 Score=55.55 Aligned_cols=50 Identities=30% Similarity=0.403 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCc---cHHHHHHHhC--CCCHHHHHHHHHHHHHHHhhc
Q 040811 2 SWTDEEHDKFLEALQLFDR---DWKKIEDFVG--SKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr---dWkkIA~~Vg--TRT~~QcrsHaQkYf~kl~k~ 51 (258)
.||.|=|++|++||.+.|. -=++|-++++ .=|..+|+||.|||...+.+.
T Consensus 239 rWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 239 DWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred cCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence 6999999999999999993 5667776665 579999999999999887643
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.0081 Score=60.76 Aligned_cols=45 Identities=18% Similarity=0.491 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFL 46 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~ 46 (258)
-|+..|++.+..++.+||. .|.+|+..+..||+.||+.+|.+|..
T Consensus 9 vwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 9 VWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLD 54 (617)
T ss_pred eecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhC
Confidence 4999999999999999995 99999999999999999999998853
No 24
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.91 E-value=0.016 Score=43.51 Aligned_cols=47 Identities=32% Similarity=0.517 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHH------hC--------ccHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQL------FD--------RDWKKIEDFVG----SKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~------yG--------rdWkkIA~~Vg----TRT~~QcrsHaQkYf~kl 48 (258)
.||++|...||+.+.. |+ .-|+.||+.+. .||+.||+..+.+-..+-
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 6999999999998876 31 16999997764 599999999987754444
No 25
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=95.91 E-value=0.012 Score=57.83 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
++||.+|.++|.+||.++|-|+..|+.++++|...||+.
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKa 404 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKA 404 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHH
Confidence 589999999999999999999999999999999999998
No 26
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=95.12 E-value=0.02 Score=58.73 Aligned_cols=46 Identities=26% Similarity=0.518 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHH-------Hh------------------C-ccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQ-------LF------------------D-RDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~-------~y------------------G-rdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
.||.||.++|++.++ +| . =+|..|++.+|||+..|||.+|.+-...
T Consensus 438 ~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 438 AWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhh
Confidence 699999999999995 45 1 2899999999999999999988876544
No 27
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=95.05 E-value=0.03 Score=57.50 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
.||++|.+.+...+.++|.+|+.|++.+|. .+.-||.||..|-..
T Consensus 386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr-~P~~crd~wr~~~~~ 430 (607)
T KOG0051|consen 386 KWTPEEEEELKKLVVEHGNDWKEIGKALGR-MPMDCRDRWRQYVKC 430 (607)
T ss_pred CCCcchHHHHHHHHHHhcccHHHHHHHHcc-CcHHHHHHHHHhhcc
Confidence 699999999999999999999999999985 789999999988544
No 28
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=94.59 E-value=0.031 Score=56.36 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHH-HHhCCCCHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIE-DFVGSKTVIQIRSHA 41 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA-~~VgTRT~~QcrsHa 41 (258)
|.|+..|..+|.+||++||+|++.|- +|++=|+..-|..+|
T Consensus 286 EEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyY 327 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYY 327 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHH
Confidence 67999999999999999999999997 899999999988865
No 29
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=94.12 E-value=0.093 Score=52.65 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHA 41 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHa 41 (258)
.||.||..+|.+|+..||+++++|-+.++-|+...++-+|
T Consensus 189 ~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyY 228 (534)
T KOG1194|consen 189 EWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYY 228 (534)
T ss_pred cchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHH
Confidence 6999999999999999999999999999999999988765
No 30
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.89 E-value=0.12 Score=56.23 Aligned_cols=46 Identities=22% Similarity=0.472 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
.||..+-..|+.|..+||| +..+||..|.+||+.+|+.+++-|+.+
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~ 872 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWER 872 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 5999999999999999997 999999999999999999888776644
No 31
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=92.90 E-value=0.056 Score=54.67 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
.|+..|++.++.+++.|| .+|.+||..+..||..||+.||..|....
T Consensus 22 sw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~ 69 (512)
T COG5147 22 SWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQ 69 (512)
T ss_pred CCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchh
Confidence 699999999999999999 59999999999999999999997775543
No 32
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=92.66 E-value=0.54 Score=34.76 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHh-----C------------ccHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLF-----D------------RDWKKIEDFV-----GSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~y-----G------------rdWkkIA~~V-----gTRT~~QcrsHaQkYf~kl~k 50 (258)
.||.+|.+.|++.+++| | +-|..|+..+ +.||..|++..|.++-....+
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999887 2 2799998655 269999999999988666543
No 33
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=89.65 E-value=0.43 Score=48.48 Aligned_cols=50 Identities=16% Similarity=0.423 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
..|+.+|+..++..-.++|--|..||.+++.||..||..+|.+-+....+
T Consensus 73 ~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 73 KNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred ccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 36999999999999999999999999999999999999988876655433
No 34
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.58 E-value=0.43 Score=48.73 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
-|+.||++++|.+...+---|..|+..|| ||..||-.||++-.
T Consensus 61 ews~eederlLhlakl~p~qwrtIa~i~g-r~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 61 EWSREEDERLLHLAKLEPTQWRTIADIMG-RTSQQCLERYNNLL 103 (617)
T ss_pred hhhhhHHHHHHHHHHhcCCccchHHHHhh-hhHHHHHHHHHHHH
Confidence 49999999999999999999999999997 69999999998753
No 35
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.28 Score=45.72 Aligned_cols=63 Identities=29% Similarity=0.388 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHhCc-cHHHHH-HHhCCCCHHHHHHHHH-----HHHHHHhhcCCcCCCCCCCCCCCCCCCcC
Q 040811 2 SWTDEEHDKFLEALQLFDR-DWKKIE-DFVGSKTVIQIRSHAQ-----KYFLKVQKNGTIAHVPPPRPKRKAAHPYP 71 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr-dWkkIA-~~VgTRT~~QcrsHaQ-----kYf~kl~k~g~~~~lP~p~~kR~s~hp~p 71 (258)
.|++.++.+++.++.++|+ +|.+|+ .++-.|++.|+.+|+| +|+.+....+. ..+|.+.|.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~ 235 (335)
T KOG0724|consen 166 PVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEE-------EKRRKSIEDIT 235 (335)
T ss_pred hhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhcc-------ccccchhhhhh
Confidence 5899999999999999996 999988 7778899999999999 88888744331 23455666554
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=88.42 E-value=0.86 Score=40.04 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHh---Cc----cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 2 SWTDEEHDKFLEALQLF---DR----DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~y---Gr----dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
.||.||+.+|-+.|.+| |+ -+..|+..+ +||..-|.-||..|..+....
T Consensus 6 AWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 6 AWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred ccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 69999999999999998 42 555555554 589999999999998765443
No 37
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=87.35 E-value=2 Score=32.46 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHh---C----------ccHHHHHHHhC-----CCCHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLF---D----------RDWKKIEDFVG-----SKTVIQIRSHAQKY 44 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~y---G----------rdWkkIA~~Vg-----TRT~~QcrsHaQkY 44 (258)
+||++++..||+.+... | ..|+.|++.+. ..|..||++|+...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999988655 1 15888874443 36899999997654
No 38
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=85.23 E-value=1.3 Score=43.91 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHhC----------------ccHHHHHHHhC-----CCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD----------------RDWKKIEDFVG-----SKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG----------------rdWkkIA~~Vg-----TRT~~QcrsHaQkYf~kl 48 (258)
.|+++=++.|.|||..|- ++=.-||.||. |||..||-+|-|=.-++.
T Consensus 78 vWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk 145 (455)
T KOG3841|consen 78 VWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 145 (455)
T ss_pred ccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 599999999999998762 12256898886 799999999998654443
No 39
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=82.39 E-value=4.2 Score=38.23 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHhC----------ccHHHHHH---HhC-CCCHHHHHHHHHHHHHHHhh
Q 040811 1 ESWTDEEHDKFLEALQLFD----------RDWKKIED---FVG-SKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG----------rdWkkIA~---~Vg-TRT~~QcrsHaQkYf~kl~k 50 (258)
..|+.+|...||++..... ..|..||. ..| -||+.||+..+.+-..+..+
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3799999999999774432 26999996 233 59999999988765444433
No 40
>smart00426 TEA TEA domain.
Probab=81.16 E-value=2 Score=32.92 Aligned_cols=42 Identities=29% Similarity=0.508 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHhCc--cHH--------------HHHHHhC-----CCCHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR--DWK--------------KIEDFVG-----SKTVIQIRSHAQ 42 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr--dWk--------------kIA~~Vg-----TRT~~QcrsHaQ 42 (258)
+-|.++=+..|++||+.|-. .++ -|++||- .||..||-||-|
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 36999999999999998852 121 1454443 377777777755
No 41
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=80.92 E-value=2.4 Score=37.49 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHH--HHhC---CCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIE--DFVG---SKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA--~~Vg---TRT~~QcrsHaQkYf~kl 48 (258)
..||+||+.++-+.+..|++ .=..++ +.+| .||..+|..||..+..+.
T Consensus 6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~ 59 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQ 59 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence 36999999999999999985 222233 2223 689999999996665543
No 42
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=80.53 E-value=5.2 Score=33.18 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHhC----ccHHHHHHH------------hCCCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFD----RDWKKIEDF------------VGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG----rdWkkIA~~------------VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.||++|+.-+|-.+.+|| +.|..|-+. +.+||+..+..|..--..-+.+
T Consensus 51 ~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K 115 (118)
T PF09111_consen 51 VYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK 115 (118)
T ss_dssp SS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred CcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999 499998654 4599999999988754444443
No 43
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=78.42 E-value=3.8 Score=30.67 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHhC---------ccHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD---------RDWKKIEDFVG-SKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG---------rdWkkIA~~Vg-TRT~~QcrsHaQkYf~k 47 (258)
.+|++|+..+++.|..+. .=|+.+++.-. ..|..--|.||.|.+..
T Consensus 4 ~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 4 PFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp ---HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 589999999999997663 26999996656 78888889987776543
No 44
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=77.64 E-value=5.4 Score=30.27 Aligned_cols=38 Identities=26% Similarity=0.534 Sum_probs=27.6
Q ss_pred HHHHHHHHhC--------ccHHHHHHHhCCCC-----HHHHHHHHHHHHHH
Q 040811 10 KFLEALQLFD--------RDWKKIEDFVGSKT-----VIQIRSHAQKYFLK 47 (258)
Q Consensus 10 ~FLeaL~~yG--------rdWkkIA~~VgTRT-----~~QcrsHaQkYf~k 47 (258)
+|-.+|.++| +.|..|++.+|-.+ ..+++.+|.+|+..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 3445666666 37999999998533 47899999998653
No 45
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=75.96 E-value=10 Score=25.75 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHH
Q 040811 6 EEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQK 43 (258)
Q Consensus 6 eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQk 43 (258)
+=+.++|..|+.-|+ .|..||+.+|- |...|..+.++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lgl-S~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGL-SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCc-CHHHHHHHHHH
Confidence 456789999999996 99999999998 88888887765
No 46
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=74.82 E-value=8.4 Score=25.79 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
=|...+.++|+.+|++..+.|+.+|- +...+..
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lgi-sr~tL~~ 37 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLGI-SRRTLYR 37 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHTS--HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCC-CHHHHHH
Confidence 37788899999999999999999996 4344433
No 47
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=74.15 E-value=1.4 Score=49.60 Aligned_cols=47 Identities=26% Similarity=0.228 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
||.+.-..||..+||+|.+|+..|+++|..||+..+-||-.++..++
T Consensus 360 ee~ev~k~Glveh~R~~aai~p~vvt~tes~c~na~a~~~~r~N~d~ 406 (1672)
T KOG1878|consen 360 EEMEVAKSGLVEHGREWAAILPKVVTKTESQCKNAYAKYKNRHNLDE 406 (1672)
T ss_pred hhhhhhhccchhhhhhHHHhcCccceecccchhhHHHhhhhhhcchh
Confidence 45556677899999999999999999999999998778877766554
No 48
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=71.44 E-value=3.2 Score=42.99 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
..||..|.++|-.++..+|-+..-|++..+.|+..|||. ||-++
T Consensus 410 ~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~---K~~~e 453 (584)
T KOG2009|consen 410 DKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKA---KFKKE 453 (584)
T ss_pred CcccchhhHHhhhHHhhhcccccccccccccccHHHHHH---HHhhh
Confidence 479999999999999999999999999999999999998 55444
No 49
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=71.16 E-value=16 Score=29.10 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHh----C----ccHHHHHHHhCCC-----CHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLF----D----RDWKKIEDFVGSK-----TVIQIRS 39 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~y----G----rdWkkIA~~VgTR-----T~~Qcrs 39 (258)
.||++++..+|+||..| | .||...-++|... |..|+..
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~ 56 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYD 56 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 59999999999999988 6 3888877776543 6667654
No 50
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=67.61 E-value=9 Score=38.97 Aligned_cols=48 Identities=2% Similarity=-0.085 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
.||.+|..+++.+|++||++...|+-.||.++..|++...-.|-.+..
T Consensus 371 ~~~T~~~la~v~~I~~~~~~~~pl~wrik~t~cmee~e~l~~~~Rr~m 418 (534)
T KOG1194|consen 371 CFDTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEENEILNEEARRQM 418 (534)
T ss_pred ccCcHHHHHHHHHHHHhccCcchhhhHhcCcchhhHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999987777755543
No 51
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=67.12 E-value=4.8 Score=40.10 Aligned_cols=43 Identities=30% Similarity=0.560 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHhC----ccH----------HHHHHHhC-----CCCHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD----RDW----------KKIEDFVG-----SKTVIQIRSHAQKY 44 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG----rdW----------kkIA~~Vg-----TRT~~QcrsHaQkY 44 (258)
.|+++=+..|++||..|- +.+ +-|+.||. .||.+||-+|.|-.
T Consensus 51 vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 51 VWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 599999999999998883 122 23777765 58999999999865
No 52
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=65.05 E-value=21 Score=27.34 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=28.9
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCCC-----HHHHHHHHHHHHHHHh
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSKT-----VIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTRT-----~~QcrsHaQkYf~kl~ 49 (258)
|-.++.+.| +.|..|+..+|-.. ..+++.+|++|.....
T Consensus 37 Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~yE 88 (93)
T smart00501 37 LYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPFE 88 (93)
T ss_pred HHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHHH
Confidence 344677777 38999999988643 5788999999866543
No 53
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=64.65 E-value=20 Score=35.01 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHh-Cc---cHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLF-DR---DWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~y-Gr---dWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
.||..|...+|.+|+-- |. |-..|++.+.+|+..+|+..-|+.-.++
T Consensus 23 ~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rv 73 (344)
T PF11035_consen 23 AWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRV 73 (344)
T ss_pred cCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence 59999999999999866 43 6667888999999999999777654443
No 54
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=64.10 E-value=15 Score=30.67 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 6 EEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 6 eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
+-+.++|++|++-|| .|..||+.+|. |...|+.+.+ ++...|
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lgl-S~~tV~~Ri~----rL~~~G 51 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGV-SPGTIHVRVE----KMKQAG 51 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCC
Confidence 567889999999997 99999999998 8888988755 445555
No 55
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=63.64 E-value=23 Score=30.76 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHhCc---cHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 3 WTDEEHDKFLEALQLFDR---DWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGr---dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
++..+...|+.++.+||- +|+-.-..+..||..+++.+.-=|..+|..
T Consensus 41 Fn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~HL~E 91 (145)
T PF06461_consen 41 FNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMRHLCE 91 (145)
T ss_pred cCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHHHhcC
Confidence 577889999999999993 999999999999999999988777777654
No 56
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=57.81 E-value=20 Score=30.25 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 5 DEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 5 ~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
++-+.++|.+|++-|| .|..||+.+|- |...|+.|.++ +...|
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lgl-S~~tv~~Ri~r----L~~~G 56 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGL-SPTPCLERVRR----LERQG 56 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCc-CHHHHHHHHHH----HHHCC
Confidence 3567889999999997 99999999997 88888887654 45544
No 57
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=57.51 E-value=18 Score=39.19 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
+.||..+-..|+.|..+||+ |-..||.-|-. |++.+..++.-+|.++.+.
T Consensus 796 t~w~k~df~~fi~a~eKygr~di~~ia~~~e~-~~eev~~y~rvfwer~~el 846 (971)
T KOG0385|consen 796 TNWTKRDFNQFIKANEKYGRDDIENIAAEVEG-TPEEVGEYARVFWERLEEL 846 (971)
T ss_pred cchhhhhHHHHHHHhhccCcchhhhhHHhhcC-CHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999997 88999988877 9999999999888887664
No 58
>smart00595 MADF subfamily of SANT domain.
Probab=52.19 E-value=18 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.4
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 21 DWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 21 dWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
-|..||..+|. |+.+|+.+|.+-
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHH
Confidence 79999999998 999999888653
No 59
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=52.15 E-value=53 Score=22.19 Aligned_cols=36 Identities=6% Similarity=0.180 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 8 HDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 8 h~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
+...+...-..|..|..||+.+| .|...|+.+.++=
T Consensus 15 ~r~i~~l~~~~g~s~~eIa~~l~-~s~~~v~~~l~ra 50 (54)
T PF08281_consen 15 QREIFLLRYFQGMSYAEIAEILG-ISESTVKRRLRRA 50 (54)
T ss_dssp HHHHHHHHHTS---HHHHHHHCT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHC-cCHHHHHHHHHHH
Confidence 33344444455779999999998 4888888876543
No 60
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=51.12 E-value=15 Score=32.23 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=28.7
Q ss_pred ChHHHHhhhccccCCCchhHHHhhhcCCcchHHHHHHHHH
Q 040811 174 DFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMR 213 (258)
Q Consensus 174 dFaqVY~FigsvFdp~~~~hlq~Lk~Mdpi~~eTvlLlmr 213 (258)
+|+++|+||-..=.-+...|++.|-.-==|+.+++.++++
T Consensus 99 ~F~~~Y~~l~~~~~~~l~~~~~~La~~l~i~~~~l~fml~ 138 (195)
T PF10141_consen 99 QFKKLYKFLKQHPNFDLKEQLQALAKYLGISPDTLKFMLK 138 (195)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 8999999998752223366888876655577777776654
No 61
>PRK01905 DNA-binding protein Fis; Provisional
Probab=49.91 E-value=50 Score=24.85 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 5 DEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 5 ~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
+-|...+.++|+.+|+++.+.|+.+|- +...++.
T Consensus 36 ~~E~~~i~~aL~~~~gn~s~aAr~LGI-srstL~r 69 (77)
T PRK01905 36 CVEKPLLEVVMEQAGGNQSLAAEYLGI-NRNTLRK 69 (77)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCC-CHHHHHH
Confidence 346778889999999999999999996 3333433
No 62
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=48.23 E-value=50 Score=26.17 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCC
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgT 31 (258)
-|...+.++++.+|+++.+.|+.+|-
T Consensus 55 ~Er~~i~~aL~~~~gn~s~AAr~LGI 80 (95)
T PRK00430 55 VEAPLLDMVMQYTRGNQTRAALMLGI 80 (95)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 36778899999999999999999996
No 63
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=47.50 E-value=46 Score=36.90 Aligned_cols=50 Identities=16% Similarity=0.353 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIED------------FVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~------------~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
.||++|+.-+|-.+.+|| ++|..|-. |+.+||+..+..|..-....+.+.
T Consensus 928 ~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~~e 990 (1033)
T PLN03142 928 LYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIEKE 990 (1033)
T ss_pred cCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999 78999944 345999999999987666666554
No 64
>PHA00442 host recBCD nuclease inhibitor
Probab=46.35 E-value=24 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhC-ccHHHHHHH
Q 040811 5 DEEHDKFLEALQLFD-RDWKKIEDF 28 (258)
Q Consensus 5 ~eEh~~FLeaL~~yG-rdWkkIA~~ 28 (258)
-+.+..||++|+.+| .||..+...
T Consensus 25 Lek~~~~L~~Lea~GVDNW~Gy~eA 49 (59)
T PHA00442 25 LEKDNEFLKALRACGVDNWDGYMDA 49 (59)
T ss_pred HHHhhHHHHHHHHcCCcchhhHHHH
Confidence 356778999999999 599998754
No 65
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=44.86 E-value=54 Score=25.08 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 6 EEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 6 eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
+.+.+++.+|++.|+ .|+.||+.+|- +...|+.+.+ ++.+.|
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~~-s~~tv~~~l~----~L~~~g 45 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVGL-SPSTVHNRVK----RLEEEG 45 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCC
Confidence 567899999999986 99999999987 7788887644 444444
No 66
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=44.64 E-value=19 Score=36.03 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHH-----hCC-CCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDF-----VGS-KTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~-----VgT-RT~~QcrsHaQkYf~kl~k 50 (258)
.||.+|.+-|-+.-+.|+-+|--||.- .++ ||++..+.+|-....++-+
T Consensus 132 ~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k 186 (445)
T KOG2656|consen 132 SWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK 186 (445)
T ss_pred cccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence 599999999999999999888888843 566 9999999988666565544
No 67
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=42.74 E-value=17 Score=27.65 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=14.9
Q ss_pred HHHHHHHHhCccHHHHHH
Q 040811 10 KFLEALQLFDRDWKKIED 27 (258)
Q Consensus 10 ~FLeaL~~yGrdWkkIA~ 27 (258)
.+.+.|+.||+||.-|.+
T Consensus 31 vl~~LL~lY~~nW~lIEe 48 (65)
T PF10440_consen 31 VLKNLLKLYDGNWELIEE 48 (65)
T ss_pred HHHHHHHHHcCCchhhhc
Confidence 456688999999999983
No 68
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=41.68 E-value=45 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHhCccHHHHHHHhC
Q 040811 4 TDEEHDKFLEALQLFDRDWKKIEDFVG 30 (258)
Q Consensus 4 T~eEh~~FLeaL~~yGrdWkkIA~~Vg 30 (258)
|+++.+.|-+- -|++|+.++..+|
T Consensus 1 ~~~~~q~~~~n---vGr~WK~laR~Lg 24 (90)
T cd08780 1 TPADQQHFAKS---VGKKWKPVGRSLQ 24 (90)
T ss_pred CHHHHHHHHHH---HhHHHHHHHHHHc
Confidence 45566666544 4799999999999
No 69
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=35.40 E-value=58 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
.||+|+.+++.+. ..-|..-..||..+|..|...|.-
T Consensus 2 ~Wtde~~~~L~~l-w~~G~SasqIA~~lg~vsRnAViG 38 (162)
T PF07750_consen 2 SWTDERVERLRKL-WAEGLSASQIARQLGGVSRNAVIG 38 (162)
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHhCCcchhhhhh
Confidence 5999988866554 466889999999999444444443
No 70
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.11 E-value=22 Score=31.73 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIED 27 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~ 27 (258)
|.|-.+-+-.||.|+..|| ++|..|.+
T Consensus 4 ~iw~r~hdywll~gi~~hgy~rwqdi~n 31 (173)
T PF08074_consen 4 EIWHRRHDYWLLAGIVKHGYGRWQDIQN 31 (173)
T ss_pred hhhhhhhhHHHHhHHhhccchhHHHHhc
Confidence 4688899999999999999 79999973
No 71
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=32.18 E-value=28 Score=39.38 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHH--------HHhC----CCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIE--------DFVG----SKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA--------~~Vg----TRT~~QcrsHaQkYf~kl~k 50 (258)
.|..+|+..||.||-+|| ++|..|- +.|. --+..|...++ .|...+-+
T Consensus 1135 ~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~-~yLls~~~ 1195 (1373)
T KOG0384|consen 1135 DWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRA-DYLLSLLR 1195 (1373)
T ss_pred CCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHH-HHHHHHHh
Confidence 599999999999999999 7999983 2232 22345555554 47766544
No 72
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=32.04 E-value=1.3e+02 Score=18.76 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
+++++.. ++..+-..|..+..||+.+|- +..+|+.+-.+..
T Consensus 11 l~~~~~~-~~~~~~~~~~~~~~ia~~~~~-s~~~i~~~~~~~~ 51 (55)
T cd06171 11 LPERERE-VILLRFGEGLSYEEIAEILGI-SRSTVRQRLHRAL 51 (55)
T ss_pred CCHHHHH-HHHHHHhcCCCHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 4455443 444444466799999998885 6677766554443
No 73
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=31.77 E-value=85 Score=22.41 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=20.6
Q ss_pred ccHHHHHHHhCC-CCHHHHHHHHHHH
Q 040811 20 RDWKKIEDFVGS-KTVIQIRSHAQKY 44 (258)
Q Consensus 20 rdWkkIA~~VgT-RT~~QcrsHaQkY 44 (258)
.-|..||..++. -++.+|+.+|.+.
T Consensus 27 ~aw~~Ia~~l~~~~~~~~~~~~w~~L 52 (85)
T PF10545_consen 27 EAWQEIARELGKEFSVDDCKKRWKNL 52 (85)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHH
Confidence 479999999985 4788999888774
No 74
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=31.70 E-value=44 Score=23.56 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCccHHHHHHHhCC
Q 040811 5 DEEHDKFLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 5 ~eEh~~FLeaL~~yGrdWkkIA~~VgT 31 (258)
.+.|++|...|+.-...++-||+|+|-
T Consensus 18 ~~~~d~F~~~L~~s~D~F~vIaeyfGr 44 (49)
T PF12451_consen 18 ADQHDLFFKQLEESEDRFSVIAEYFGR 44 (49)
T ss_pred hhcHHHHHHHHHhCCCCchhHHHHHcc
Confidence 456899999997777799999999983
No 75
>PF12549 TOH_N: Tyrosine hydroxylase N terminal ; InterPro: IPR021164 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. There is a single completely conserved residue G that may be functionally important. Tyrosine hydroxylase converts L-tyrosine to L-DOPA in the catecholamine synthesis pathway. ; GO: 0004511 tyrosine 3-monooxygenase activity, 0055114 oxidation-reduction process
Probab=30.94 E-value=25 Score=22.18 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred hhCCCCCchhHHhhhhcccCC
Q 040811 217 LNLSSPDFEPIRNVLSSYDAK 237 (258)
Q Consensus 217 ~NL~sp~fe~~~~~ls~y~~~ 237 (258)
-|+++|.|---|+-++.||..
T Consensus 3 Ps~ts~~~~G~r~avse~d~k 23 (25)
T PF12549_consen 3 PSITSPQAKGFRRAVSELDSK 23 (25)
T ss_pred CcccCCCCccchhhhhhhccc
Confidence 489999999999999999975
No 76
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=29.97 E-value=1.9e+02 Score=21.21 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
++++|.+.|++ .|+..++.=+..+|+.++..||.++..
T Consensus 20 l~~~er~~lv~----------nia~~l~~v~~~~i~~r~l~~f~~vd~ 57 (68)
T PF06628_consen 20 LSDEERERLVE----------NIAGHLSGVSDEEIQERVLAYFYKVDP 57 (68)
T ss_dssp SSHHHHHHHHH----------HHHHHHTTSSHHHHHHHHHHHHHHH-H
T ss_pred CCHHHHHHHHH----------HHHHHHccCChhhHHHHHHHHHHHhCH
Confidence 45666666653 478888887877799999999988754
No 77
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=29.61 E-value=1.8e+02 Score=19.48 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 4 TDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 4 T~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
+++|.+.+..-+ ..|..+..||+.+|- |...|+.+..+=+.++
T Consensus 6 ~~~er~vi~~~y-~~~~t~~eIa~~lg~-s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 6 PPREREVIRLRY-FEGLTLEEIAERLGI-SRSTVRRILKRALKKL 48 (50)
T ss_dssp -HHHHHHHHHHH-TST-SHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-cCCCCHHHHHHHHCC-cHHHHHHHHHHHHHHh
Confidence 344444443333 334699999999997 7777777655555555
No 78
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=28.66 E-value=1.1e+02 Score=20.32 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHH
Q 040811 4 TDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSH 40 (258)
Q Consensus 4 T~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsH 40 (258)
+.++....+..+.. |.....||+.+|- +...|..-
T Consensus 3 ~~~~R~~ii~l~~~-G~s~~~ia~~lgv-s~~Tv~~w 37 (50)
T PF13384_consen 3 SEERRAQIIRLLRE-GWSIREIAKRLGV-SRSTVYRW 37 (50)
T ss_dssp -------HHHHHHH-T--HHHHHHHHTS--HHHHHHH
T ss_pred chhHHHHHHHHHHC-CCCHHHHHHHHCc-CHHHHHHH
Confidence 44556666777777 8899999999984 55555543
No 79
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=47 Score=29.32 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=34.5
Q ss_pred HHhhhccccCCCc--hh--HHHhhhc--CCcchHHHHHHHHHHh--hhhCCCC
Q 040811 178 VYSFIGSVFDPDT--KG--HVQKLKE--MDPINFETVLLLMRNL--SLNLSSP 222 (258)
Q Consensus 178 VY~FigsvFdp~~--~~--hlq~Lk~--Mdpi~~eTvlLlmrNL--s~NL~sp 222 (258)
+-.|+..+|.||+ +| -|+-||+ -.--||+||||-+.-| +-|-.||
T Consensus 94 ~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SP 146 (175)
T KOG0421|consen 94 TVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSP 146 (175)
T ss_pred eeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCc
Confidence 3479999999986 33 5666766 4567999999999988 5566666
No 80
>cd08312 Death_MyD88 Death domain of Myeloid Differentation primary response protein MyD88. Death Domain (DD) of Myeloid Differentiation primary response protein 88 (MyD88). MyD88 is an adaptor protein involved in interleukin-1 receptor (IL-1R)- and Toll-like receptor (TLR)-induced activation of nuclear factor-kappaB (NF-kB) and mitogen activated protein kinase pathways that lead to the induction of proinflammatory cytokines. It is a key component in the signaling pathway of pathogen recognition in the innate immune system. MyD88 contains an N-terminal DD and a C-terminal Toll/IL-1 Receptor (TIR) homology domain that mediates interaction with TLRs and IL-1R. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and
Probab=25.84 E-value=28 Score=26.53 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=18.4
Q ss_pred HHHHHHHHhCccHHHHHHHhCCCCHHHH
Q 040811 10 KFLEALQLFDRDWKKIEDFVGSKTVIQI 37 (258)
Q Consensus 10 ~FLeaL~~yGrdWkkIA~~VgTRT~~Qc 37 (258)
.+|.--..+|+||+.+|..+|- +...|
T Consensus 7 ~~Ldp~~~~g~DWr~LA~~Lg~-~~~~I 33 (79)
T cd08312 7 LFLNPPRVVAADWTALAEEMGF-EYLEI 33 (79)
T ss_pred HHcCCCCCcccCHHHHHHHcCC-CHHHH
Confidence 3444444578999999999995 43333
No 81
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=25.32 E-value=80 Score=32.50 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=40.1
Q ss_pred ccCCCchhHHHhhhcCCcchHHH--HHHHHHHhhhhCCCCCchhHHhhhhccc
Q 040811 185 VFDPDTKGHVQKLKEMDPINFET--VLLLMRNLSLNLSSPDFEPIRNVLSSYD 235 (258)
Q Consensus 185 vFdp~~~~hlq~Lk~Mdpi~~eT--vlLlmrNLs~NL~sp~fe~~~~~ls~y~ 235 (258)
+|-++.+.=+.+|.+|||++.-| +=-+.=+++.||-.|.|.+....|..|.
T Consensus 243 lf~~~~s~L~~~i~~~DP~~~r~~~iD~fIl~~~l~i~d~~~~~f~~~l~~~g 295 (504)
T TIGR03238 243 LFSKERSELLKFLHELDPVHRRTSKIDQFIIDLSLNLPDQEFNEFKTVLNRLG 295 (504)
T ss_pred CCCccccHHHHHhhhcCchhhcchhHhHHHHHhhccCCchhHHHHHHHHHhcc
Confidence 45567888999999999999855 3344556699999999999888877754
No 82
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=24.10 E-value=66 Score=34.36 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 43 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQk 43 (258)
.|+.-|...|..+...||.+.-.|+..+.+||=.||-.+.++
T Consensus 411 ew~~~ek~~fr~~~~~~~~n~c~Iar~l~~ktC~~v~~~~~~ 452 (739)
T KOG1079|consen 411 EWNGAEKVLFRVGSTLYGTNRCSIARNLLTKTCRQVYEYEQK 452 (739)
T ss_pred ccchhhhHHHHhccccccchhhHHHHHhcchHHHHHHHHhhc
Confidence 699999999999999999999999999999999888887664
No 83
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=23.97 E-value=60 Score=24.91 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 5 DEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 5 ~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
.||-+++|..= .-|+||+..|..+|- +...|+.
T Consensus 2 ~~~v~~ll~~~-nlG~dW~~LA~~LG~-~~~~I~~ 34 (77)
T cd08311 2 QEEVEKLLESG-RPGRDWRSLAGELGY-EDEAIDT 34 (77)
T ss_pred hHHHHHHHhCC-CCccCHHHHHHHcCC-CHHHHHH
Confidence 46777777411 457899999999997 3455544
No 84
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=23.39 E-value=47 Score=25.60 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHH
Q 040811 2 SWTDEEHDKFLE 13 (258)
Q Consensus 2 ~WT~eEh~~FLe 13 (258)
-||+|+++.|+.
T Consensus 49 iWT~eDD~~L~~ 60 (87)
T PF11626_consen 49 IWTPEDDEMLRS 60 (87)
T ss_dssp ---HHHHHHHTS
T ss_pred CcCHHHHHHHHc
Confidence 599999998844
No 85
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=23.28 E-value=1.3e+02 Score=21.06 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 9 DKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 9 ~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
+.+.+|++..|.|=..|-+.+.+|+..|.+.=.+.|...
T Consensus 4 ~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~ 42 (66)
T PF00191_consen 4 ELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKK 42 (66)
T ss_dssp HHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhh
Confidence 467788888887777778888899999999877777544
No 86
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=22.90 E-value=1.8e+02 Score=23.79 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=50.0
Q ss_pred ChHHHHhhhccccCCCchhHHHhh-hcCCc-----chHHHHHHHHHHhhhhCCCC--CchhHHhhhhcccCCCc
Q 040811 174 DFAEVYSFIGSVFDPDTKGHVQKL-KEMDP-----INFETVLLLMRNLSLNLSSP--DFEPIRNVLSSYDAKSK 239 (258)
Q Consensus 174 dFaqVY~FigsvFdp~~~~hlq~L-k~Mdp-----i~~eTvlLlmrNLs~NL~sp--~fe~~~~~ls~y~~~~~ 239 (258)
.+..+.+.+|.- -+..+++.+ ++.|+ |+++-.+-||..+..+.... .-+..++.+.-||.++.
T Consensus 29 el~~~lr~lg~~---~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~ 99 (151)
T KOG0027|consen 29 ELGAVLRSLGQN---PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGD 99 (151)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCC
Confidence 678888888876 355677764 67774 99999999999888887775 47788999999998854
No 87
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=21.85 E-value=1.5e+02 Score=29.62 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHH-------HHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIE-------DFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA-------~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
|-||.+|-....+.++.+|=.|.-|+ -..|+-...+-..+|+.-...+.+.|
T Consensus 38 evW~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~G 96 (394)
T TIGR00695 38 EVWEKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCG 96 (394)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 57999999999999999999998873 33445555666666666666666654
No 88
>PRK13722 lytic transglycosylase; Provisional
Probab=21.03 E-value=1.5e+02 Score=26.08 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=17.0
Q ss_pred HHHHHHHhCccHHHHHHHhCC
Q 040811 11 FLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 11 FLeaL~~yGrdWkkIA~~VgT 31 (258)
|...+++||..|..|+.|=.+
T Consensus 100 L~~~~~~~g~~w~AvaaYNaG 120 (169)
T PRK13722 100 LAIAFKKWGVSWEAVGAYNAG 120 (169)
T ss_pred HHHHHHHcCCchheeeecCCC
Confidence 556789999999999877654
No 89
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.81 E-value=2.3e+02 Score=24.05 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHh-CccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 3 WTDEEHDKFLEALQLF-DRDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 3 WT~eEh~~FLeaL~~y-GrdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
+++++...|..-...+ |..|-.||..+. .+..||+...+.|
T Consensus 82 l~de~k~Ii~lry~~r~~~TW~~IA~~l~-i~erta~r~~~~f 123 (130)
T PF05263_consen 82 LIDEEKRIIKLRYDRRSRRTWYQIAQKLH-ISERTARRWRDRF 123 (130)
T ss_pred hCHHHHHHHHHHHcccccchHHHHHHHhC-ccHHHHHHHHHHH
Confidence 3455555554333444 358999997766 6888888855544
No 90
>PRK03906 mannonate dehydratase; Provisional
Probab=20.79 E-value=1.5e+02 Score=29.13 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHH-------HhCCCCHHHHHHHHHHHHHHHhh
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIED-------FVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~-------~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
|.||.+|-..+.+.++.+|=.|.-|+. ..|..+..+-...|++-...+-+
T Consensus 38 ~~W~~~~i~~~~~~ie~~Gl~~~vvEs~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~ 94 (385)
T PRK03906 38 EVWPVEEILARKAEIEAAGLEWSVVESVPVHEDIKTGTPNRDRYIENYKQTLRNLAA 94 (385)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999988742 33444444444444444444433
No 91
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=20.03 E-value=92 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=17.4
Q ss_pred HHHHHHHHH-hCccHHHHHHHhCC
Q 040811 9 DKFLEALQL-FDRDWKKIEDFVGS 31 (258)
Q Consensus 9 ~~FLeaL~~-yGrdWkkIA~~VgT 31 (258)
+.|...+.. .|.+|+.+|..+|-
T Consensus 6 ~~~~~l~~~~~g~~W~~la~~Lg~ 29 (88)
T smart00005 6 EKLAKLLDHPLGLDWRELARKLGL 29 (88)
T ss_pred HHHHHHHcCccchHHHHHHHHcCC
Confidence 344445555 78999999999996
Done!