Query 040811
Match_columns 258
No_of_seqs 218 out of 768
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yum_A ZZZ3 protein, zinc fing 99.6 1.3E-15 4.3E-20 113.0 7.0 52 1-52 9-66 (75)
2 2cu7_A KIAA1915 protein; nucle 99.6 3.5E-15 1.2E-19 110.3 8.3 52 1-52 10-61 (72)
3 2elk_A SPCC24B10.08C protein; 99.5 5.2E-15 1.8E-19 105.7 6.0 46 1-46 10-57 (58)
4 2yus_A SWI/SNF-related matrix- 99.5 4.3E-15 1.5E-19 112.9 3.6 46 1-46 19-64 (79)
5 1x41_A Transcriptional adaptor 99.5 2.2E-14 7.5E-19 102.8 6.2 46 1-46 9-55 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.4 4.8E-13 1.6E-17 92.6 6.4 45 1-45 4-49 (52)
7 1gvd_A MYB proto-oncogene prot 99.4 6.7E-13 2.3E-17 92.0 5.0 45 1-45 4-49 (52)
8 2d9a_A B-MYB, MYB-related prot 99.3 7.9E-13 2.7E-17 94.0 5.4 44 2-45 10-54 (60)
9 2din_A Cell division cycle 5-l 99.3 5.9E-12 2E-16 91.2 8.0 51 1-52 10-60 (66)
10 2iw5_B Protein corest, REST co 99.3 1.2E-12 3.9E-17 117.3 4.8 49 1-49 134-182 (235)
11 1w0t_A Telomeric repeat bindin 99.3 4.9E-12 1.7E-16 88.2 6.8 45 1-45 3-50 (53)
12 2eqr_A N-COR1, N-COR, nuclear 99.3 4.7E-12 1.6E-16 91.2 6.4 41 1-41 13-53 (61)
13 2dim_A Cell division cycle 5-l 99.3 3.5E-12 1.2E-16 93.4 5.5 44 2-45 11-55 (70)
14 2cqr_A RSGI RUH-043, DNAJ homo 99.3 6.1E-12 2.1E-16 94.5 5.8 45 1-45 19-67 (73)
15 1ity_A TRF1; helix-turn-helix, 99.2 1.2E-11 4.1E-16 90.4 6.9 47 1-47 11-60 (69)
16 2cjj_A Radialis; plant develop 99.2 1.3E-11 4.3E-16 96.7 7.0 60 1-61 9-72 (93)
17 2ltp_A Nuclear receptor corepr 98.9 8.3E-13 2.8E-17 101.7 0.0 51 1-51 17-67 (89)
18 3sjm_A Telomeric repeat-bindin 99.2 2E-11 6.8E-16 89.1 6.8 44 2-45 13-59 (64)
19 2xag_B REST corepressor 1; ami 99.2 6.6E-12 2.2E-16 122.3 4.9 50 1-50 381-430 (482)
20 2k9n_A MYB24; R2R3 domain, DNA 99.1 1.9E-10 6.4E-15 90.1 7.7 51 1-51 54-104 (107)
21 2yqk_A Arginine-glutamic acid 99.1 1.2E-10 4E-15 84.7 6.0 41 1-41 10-51 (63)
22 3osg_A MYB21; transcription-DN 99.1 1.2E-10 4.1E-15 93.8 5.7 44 2-45 13-56 (126)
23 2k9n_A MYB24; R2R3 domain, DNA 99.1 1.6E-10 5.6E-15 90.5 5.8 45 1-45 2-47 (107)
24 3osg_A MYB21; transcription-DN 99.0 2.1E-10 7.2E-15 92.3 6.1 48 1-48 63-110 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 99.0 1.8E-10 6.1E-15 89.4 5.0 44 1-44 5-49 (105)
26 2crg_A Metastasis associated p 99.0 4E-10 1.4E-14 83.6 6.1 41 1-41 9-50 (70)
27 2llk_A Cyclin-D-binding MYB-li 99.0 3.9E-10 1.3E-14 84.7 6.1 41 1-42 24-64 (73)
28 1gv2_A C-MYB, MYB proto-oncoge 99.0 2.3E-10 8E-15 88.7 5.0 45 1-45 57-101 (105)
29 1wgx_A KIAA1903 protein; MYB D 99.0 4.3E-10 1.5E-14 84.8 6.1 44 1-44 9-56 (73)
30 3zqc_A MYB3; transcription-DNA 99.0 3.4E-10 1.2E-14 91.5 5.3 48 1-48 55-102 (131)
31 2cqq_A RSGI RUH-037, DNAJ homo 99.0 9.8E-10 3.4E-14 82.2 7.2 45 2-47 10-58 (72)
32 3zqc_A MYB3; transcription-DNA 99.0 2.1E-10 7.3E-15 92.8 3.9 45 1-45 3-48 (131)
33 1irz_A ARR10-B; helix-turn-hel 99.0 1.1E-09 3.6E-14 80.9 7.2 49 2-50 9-62 (64)
34 1h8a_C AMV V-MYB, MYB transfor 99.0 6.5E-10 2.2E-14 89.3 5.6 44 2-45 29-73 (128)
35 2ckx_A NGTRF1, telomere bindin 98.9 2.6E-09 9E-14 81.9 6.9 48 1-48 1-53 (83)
36 1h8a_C AMV V-MYB, MYB transfor 98.9 8E-10 2.7E-14 88.7 3.8 44 1-44 80-123 (128)
37 4a69_C Nuclear receptor corepr 98.9 1.8E-09 6.2E-14 84.2 5.6 41 1-41 44-84 (94)
38 1h89_C C-MYB, MYB proto-oncoge 98.8 5.8E-09 2E-13 86.4 5.3 45 1-45 59-104 (159)
39 1h89_C C-MYB, MYB proto-oncoge 98.7 1.7E-09 5.9E-14 89.6 -0.6 44 2-45 8-52 (159)
40 4eef_G F-HB80.4, designed hema 98.6 1.8E-09 6E-14 81.8 -1.2 41 2-42 22-66 (74)
41 2roh_A RTBP1, telomere binding 98.6 5.3E-08 1.8E-12 79.7 7.3 48 1-48 32-84 (122)
42 2aje_A Telomere repeat-binding 98.6 3.4E-08 1.1E-12 78.9 5.6 47 1-47 14-65 (105)
43 1x58_A Hypothetical protein 49 98.6 5.1E-08 1.8E-12 71.6 5.2 43 1-43 9-54 (62)
44 2juh_A Telomere binding protei 98.6 7.7E-08 2.6E-12 78.6 6.4 48 1-48 18-70 (121)
45 1ign_A Protein (RAP1); RAP1,ye 98.4 1.4E-07 4.9E-12 85.1 3.4 46 2-47 10-61 (246)
46 3hm5_A DNA methyltransferase 1 97.8 6.5E-05 2.2E-09 58.9 7.2 51 1-51 31-86 (93)
47 1fex_A TRF2-interacting telome 97.6 7.4E-05 2.5E-09 53.6 4.5 44 2-45 4-57 (59)
48 2xag_B REST corepressor 1; ami 97.4 2.1E-05 7.3E-10 76.8 0.0 42 1-42 190-231 (482)
49 1ofc_X ISWI protein; nuclear p 97.3 0.0003 1E-08 65.1 5.8 47 2-48 112-159 (304)
50 1ug2_A 2610100B20RIK gene prod 97.3 0.00078 2.7E-08 53.0 7.2 44 2-45 35-81 (95)
51 4iej_A DNA methyltransferase 1 96.5 0.0076 2.6E-07 47.3 7.2 51 1-51 31-86 (93)
52 2lr8_A CAsp8-associated protei 95.4 0.00053 1.8E-08 51.3 0.0 42 2-44 16-60 (70)
53 2ebi_A DNA binding protein GT- 96.1 0.0095 3.3E-07 44.5 5.7 47 1-47 5-65 (86)
54 4b4c_A Chromodomain-helicase-D 95.7 0.018 6.3E-07 48.8 6.3 49 2-50 9-62 (211)
55 2y9y_A Imitation switch protei 95.1 0.021 7.1E-07 54.3 5.2 47 2-48 125-173 (374)
56 1ofc_X ISWI protein; nuclear p 94.9 0.041 1.4E-06 50.9 6.4 50 2-51 214-279 (304)
57 1ig6_A MRF-2, modulator recogn 93.2 0.11 3.7E-06 40.3 4.8 54 11-64 38-107 (107)
58 4b4c_A Chromodomain-helicase-D 93.1 0.059 2E-06 45.6 3.4 46 2-48 136-196 (211)
59 2xb0_X Chromo domain-containin 91.4 0.13 4.4E-06 46.8 3.6 25 2-26 170-195 (270)
60 1ign_A Protein (RAP1); RAP1,ye 86.7 1.1 3.8E-05 40.5 6.1 28 21-48 173-200 (246)
61 2cxy_A BAF250B subunit, HBAF25 81.1 2.3 8E-05 33.7 5.2 40 11-50 56-107 (125)
62 2xb0_X Chromo domain-containin 79.8 3.7 0.00013 37.2 6.6 42 2-43 5-51 (270)
63 2li6_A SWI/SNF chromatin-remod 77.5 2.6 8.9E-05 33.0 4.4 38 11-48 54-99 (116)
64 2lm1_A Lysine-specific demethy 77.3 5.5 0.00019 30.4 6.1 40 11-50 49-100 (107)
65 2y9y_A Imitation switch protei 75.9 7.8 0.00027 36.8 7.8 50 2-51 230-295 (374)
66 2eqy_A RBP2 like, jumonji, at 71.1 6.4 0.00022 31.1 5.2 41 11-51 47-99 (122)
67 2jrz_A Histone demethylase jar 70.4 5.3 0.00018 31.3 4.5 41 10-50 44-96 (117)
68 1kkx_A Transcription regulator 70.3 4.8 0.00016 32.1 4.3 31 20-50 70-100 (123)
69 2jxj_A Histone demethylase jar 64.9 5.5 0.00019 29.8 3.5 30 20-49 58-91 (96)
70 3e7l_A Transcriptional regulat 64.5 13 0.00045 25.5 5.1 26 6-31 19-44 (63)
71 2hzd_A Transcriptional enhance 62.3 7.6 0.00026 29.6 3.8 43 2-44 8-71 (82)
72 1c20_A DEAD ringer protein; DN 61.8 7.3 0.00025 30.9 3.8 40 11-50 57-109 (128)
73 2kk0_A AT-rich interactive dom 59.0 9.4 0.00032 31.1 4.1 40 11-50 69-121 (145)
74 2rq5_A Protein jumonji; develo 53.5 12 0.00041 29.9 3.8 41 10-50 46-99 (121)
75 2o8x_A Probable RNA polymerase 52.8 46 0.0016 21.9 6.3 47 2-50 15-61 (70)
76 1ntc_A Protein (nitrogen regul 51.8 25 0.00086 25.8 5.1 37 6-43 51-87 (91)
77 1umq_A Photosynthetic apparatu 44.2 29 0.00099 25.7 4.4 27 5-31 40-66 (81)
78 1fse_A GERE; helix-turn-helix 43.6 69 0.0024 21.2 6.4 46 2-50 11-56 (74)
79 3c57_A Two component transcrip 38.4 1.1E+02 0.0036 22.2 6.7 47 2-51 27-73 (95)
80 3ulq_B Transcriptional regulat 37.3 89 0.003 22.8 6.1 44 3-49 30-73 (90)
81 1je8_A Nitrate/nitrite respons 36.2 69 0.0024 22.6 5.3 46 2-50 21-66 (82)
82 1eto_A FIS, factor for inversi 35.5 61 0.0021 24.5 5.1 26 6-31 58-83 (98)
83 3i4p_A Transcriptional regulat 33.8 39 0.0013 26.9 3.9 43 6-53 3-46 (162)
84 3mzy_A RNA polymerase sigma-H 32.3 1.1E+02 0.0038 22.6 6.2 42 6-50 113-154 (164)
85 1x3u_A Transcriptional regulat 32.2 1E+02 0.0036 20.7 5.5 44 3-49 17-60 (79)
86 3i5g_C Myosin catalytic light 31.0 90 0.0031 24.2 5.6 62 174-238 32-98 (159)
87 1ngr_A P75 low affinity neurot 27.3 42 0.0014 24.8 2.8 28 6-39 13-40 (85)
88 1p4w_A RCSB; solution structur 25.3 2E+02 0.0068 21.3 6.4 45 3-50 35-79 (99)
89 1g2h_A Transcriptional regulat 25.3 1.1E+02 0.0038 20.6 4.6 28 3-31 18-45 (61)
90 2o9x_A Reductase, assembly pro 24.7 38 0.0013 27.8 2.4 29 172-200 20-48 (181)
91 2jt1_A PEFI protein; solution 23.5 2E+02 0.0069 20.7 5.9 46 8-58 6-58 (77)
92 2rnj_A Response regulator prot 22.7 1.3E+02 0.0043 21.4 4.6 45 3-50 30-74 (91)
93 2e1c_A Putative HTH-type trans 22.4 1.5E+02 0.005 23.9 5.5 43 6-53 27-70 (171)
94 2yqf_A Ankyrin-1; death domain 22.2 1.6E+02 0.0054 22.3 5.4 32 7-39 17-48 (111)
95 1ku3_A Sigma factor SIGA; heli 22.1 1.9E+02 0.0064 19.5 6.1 45 4-49 12-59 (73)
96 2p7v_B Sigma-70, RNA polymeras 20.5 1.6E+02 0.0055 19.5 4.6 46 4-50 7-55 (68)
97 2dbb_A Putative HTH-type trans 20.3 1.8E+02 0.0062 22.2 5.5 43 6-53 9-52 (151)
No 1
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=113.00 Aligned_cols=52 Identities=42% Similarity=0.749 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHhC------ccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 1 ESWTDEEHDKFLEALQLFD------RDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG------rdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
..||+|||++|+++|++|| ++|.+||++|++||..|||.||++|+.++.+.|
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3799999999999999999 899999999999999999999999999887765
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.59 E-value=3.5e-15 Score=110.29 Aligned_cols=52 Identities=42% Similarity=0.762 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
..||+||+++|++++++||.+|..||.+|++||..|||.||++|+.+..+.|
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999986654
No 3
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=5.2e-15 Score=105.66 Aligned_cols=46 Identities=28% Similarity=0.632 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVG-SKTVIQIRSHAQKYFL 46 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg-TRT~~QcrsHaQkYf~ 46 (258)
..||+||+++|++++++|| ++|..||++|+ +||..|||.||++||+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 3799999999999999999 89999999999 9999999999999985
No 4
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-15 Score=112.86 Aligned_cols=46 Identities=33% Similarity=0.620 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFL 46 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~ 46 (258)
..||+||+++|++||++||++|.+||++|++||..||+.||++|++
T Consensus 19 ~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 19 REWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCC
T ss_pred CCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 3799999999999999999999999999999999999999987743
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=2.2e-14 Score=102.75 Aligned_cols=46 Identities=30% Similarity=0.514 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYFL 46 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf~ 46 (258)
..||+||+++|++++++|| ++|.+||++|++||..|||.||++|+.
T Consensus 9 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3799999999999999999 799999999999999999999999865
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.39 E-value=4.8e-13 Score=92.55 Aligned_cols=45 Identities=29% Similarity=0.542 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||+||+++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 37999999999999999997 9999999999999999999999885
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.35 E-value=6.7e-13 Score=91.96 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||+||+++|++++++||. +|..||.+|++||..|||.||++|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 37999999999999999995 8999999999999999999998874
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=7.9e-13 Score=94.04 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
.||+||+++|++++++|| ++|..||++|++||..||+.||++|+
T Consensus 10 ~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 799999999999999999 69999999999999999999998774
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.9e-12 Score=91.21 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNG 52 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g 52 (258)
..||.||+++|++++++||.+|..||+++ +||..|||.||++|+....+.+
T Consensus 10 ~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCC
Confidence 36999999999999999999999999955 5999999999999998876654
No 10
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.30 E-value=1.2e-12 Score=117.34 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
..||+||+++|++||.+||+||..||++||+||+.||++||++|..++.
T Consensus 134 ~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 134 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 3799999999999999999999999999999999999999999876643
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.30 E-value=4.9e-12 Score=88.17 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhC--CCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVG--SKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg--TRT~~QcrsHaQkYf 45 (258)
..||+||+++|++++++|| ++|..||.+++ +||..||+.||.+|.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999 79999999999 999999999998874
No 12
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.7e-12 Score=91.20 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHA 41 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHa 41 (258)
+.||+||+++|++++.+||++|.+||.+|++||+.||+.||
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999875
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.5e-12 Score=93.38 Aligned_cols=44 Identities=16% Similarity=0.467 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
.||+||+++|++++++|| ++|..||.+|++||..|||.||++|+
T Consensus 11 ~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 699999999999999999 79999999999999999999998874
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=6.1e-12 Score=94.47 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhC----ccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD----RDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG----rdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||.+|+.+|++||++|| .+|.+||++|++||..||+.||+++.
T Consensus 19 ~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3699999999999999999 69999999999999999999998764
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.25 E-value=1.2e-11 Score=90.44 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVG--SKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg--TRT~~QcrsHaQkYf~k 47 (258)
..||+||+++|++++++|| ++|..||.+++ +||..||+.||.+|+..
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 3799999999999999999 79999999999 99999999999988654
No 16
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=1.3e-11 Score=96.66 Aligned_cols=60 Identities=22% Similarity=0.491 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHhC----ccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCcCCCCCCC
Q 040811 1 ESWTDEEHDKFLEALQLFD----RDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPR 61 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG----rdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g~~~~lP~p~ 61 (258)
..||.||+.+|++||.+|| .+|.+||++|++||..||+.||+++..++..... ..+|.|.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ies-g~vp~P~ 72 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES-GKVPFPN 72 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-SSCCC--
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc-CCCCCCC
Confidence 3699999999999999997 5899999999999999999999999877654332 2466654
No 17
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=8.3e-13 Score=101.73 Aligned_cols=51 Identities=31% Similarity=0.495 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
..||+||+++|++++.+||.+|..||.+|++||..||+.||++|+.++...
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 379999999999999999999999999999999999999999998776543
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.22 E-value=2e-11 Score=89.09 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhC--CCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVG--SKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~Vg--TRT~~QcrsHaQkYf 45 (258)
.||+||+++|+++|++|| ++|..||++++ +||..||+.+|.++.
T Consensus 13 ~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 13 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 699999999999999999 69999999876 899999999998763
No 19
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.21 E-value=6.6e-12 Score=122.28 Aligned_cols=50 Identities=28% Similarity=0.566 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.+||++|+++|++||.+||+||++||++|||||+.|||+||++|+.++..
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCh
Confidence 37999999999999999999999999999999999999999998776543
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.10 E-value=1.9e-10 Score=90.14 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
..||+||+.+|++++.+||.+|..||++|++||..||+.||..+..++.+.
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred cccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 379999999999999999999999999999999999999999887776553
No 21
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=84.66 Aligned_cols=41 Identities=17% Similarity=0.518 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHH-HhCCCCHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIED-FVGSKTVIQIRSHA 41 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~-~VgTRT~~QcrsHa 41 (258)
+.||+||+.+|++||.+||+||..|+. +|++||+.||..+|
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 479999999999999999999999998 69999999999875
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.07 E-value=1.2e-10 Score=93.79 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
.||+||+++|++++++||.+|..||+++++||..||+.||.+|+
T Consensus 13 ~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 13 KFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 79999999999999999999999999999999999999999874
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.06 E-value=1.6e-10 Score=90.45 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||+||+++|++++++||. +|..||.+|++||..||+.||.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 37999999999999999995 9999999999999999999998773
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.04 E-value=2.1e-10 Score=92.34 Aligned_cols=48 Identities=27% Similarity=0.499 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
..||+||+++|++++++||.+|..||++|++||..||+.||..+..++
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999988776654
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.03 E-value=1.8e-10 Score=89.37 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
..||+||+++|++++++||. +|..||++|++||..||+.||++|
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 37999999999999999995 899999999999999999999887
No 26
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.02 E-value=4e-10 Score=83.55 Aligned_cols=41 Identities=29% Similarity=0.496 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHH-HhCCCCHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIED-FVGSKTVIQIRSHA 41 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~-~VgTRT~~QcrsHa 41 (258)
+.||++|+.+|++||.+||+||..|+. +|++||+.||..+|
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 579999999999999999999999998 79999999999976
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.02 E-value=3.9e-10 Score=84.68 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQ 42 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQ 42 (258)
..||+||+++|++++++||.+|..||+++ +||..|||.||.
T Consensus 24 ~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 37999999999999999999999999999 999999999885
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.01 E-value=2.3e-10 Score=88.73 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||+||+.+|++++++||.+|..||++|++||..||+.||..+.
T Consensus 57 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999987663
No 29
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.01 E-value=4.3e-10 Score=84.84 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc----cHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR----DWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr----dWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
+.||++|+.+|++||..|+. +|.+||++||+||+.||+.||+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 36999999999999999984 799999999999999999987644
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.99 E-value=3.4e-10 Score=91.51 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
..||+||+++|++++.+||.+|..||.+|++||..||+.||..++.+.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999998887664
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=9.8e-10 Score=82.17 Aligned_cols=45 Identities=20% Similarity=0.481 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHhC----ccHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD----RDWKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG----rdWkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
.||.||+.+|.+||.+|+ .+|.+||+++ +||+.||+.||+++...
T Consensus 10 ~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 699999999999999998 4899999999 59999999998877444
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.99 E-value=2.1e-10 Score=92.75 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||+||+++|++++++|| ++|..||.+|++||..||+.||++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 3799999999999999999 79999999999999999999999884
No 33
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.98 E-value=1.1e-09 Score=80.90 Aligned_cols=49 Identities=37% Similarity=0.526 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHhCcc---HHHHHHHhC--CCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFDRD---WKKIEDFVG--SKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrd---WkkIA~~Vg--TRT~~QcrsHaQkYf~kl~k 50 (258)
.||+|.|++|++|+++.|.+ |++|-++++ +-|..||+||.|||+.++.+
T Consensus 9 ~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 9 LWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp SSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 69999999999999999964 899999887 46999999999999999876
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.95 E-value=6.5e-10 Score=89.28 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
.||+||+++|++++++||. +|..||++|++||..||+.||.+|+
T Consensus 29 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 29 PWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 6999999999999999995 8999999999999999999998763
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.90 E-value=2.6e-09 Score=81.89 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHH----hCCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDF----VGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~----VgTRT~~QcrsHaQkYf~kl 48 (258)
.+||+||++.|++++++||. +|.+|++. +.+||..|||.+|.+++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999999995 99999985 88999999999999987654
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.88 E-value=8e-10 Score=88.75 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
..||+||+++|++++++||.+|..||++|++||..||+.||..+
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999998754
No 37
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.88 E-value=1.8e-09 Score=84.20 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHA 41 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHa 41 (258)
+.||++|+++|.+++.+||++|.+||++|++||..||..||
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999975
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.77 E-value=5.8e-09 Score=86.42 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
..||+||+++|++++++||. +|..||.++++||..||+.||.+|+
T Consensus 59 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 37999999999999999995 8999999999999999999998773
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.68 E-value=1.7e-09 Score=89.60 Aligned_cols=44 Identities=30% Similarity=0.555 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
.||+||+++|++++++|| ++|..||+++++||..||+.||++|+
T Consensus 8 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 8 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 52 (159)
T ss_dssp -----------------------------------CHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHcc
Confidence 699999999999999999 59999999999999999999998763
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.65 E-value=1.8e-09 Score=81.84 Aligned_cols=41 Identities=27% Similarity=0.567 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHhCc----cHHHHHHHhCCCCHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR----DWKKIEDFVGSKTVIQIRSHAQ 42 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr----dWkkIA~~VgTRT~~QcrsHaQ 42 (258)
.||.+|+.+|..||.+|++ +|.+||+.||+||+.||+.||+
T Consensus 22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 6999999999999999995 8999999999999999999986
No 41
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.64 E-value=5.3e-08 Score=79.70 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFV----GSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~V----gTRT~~QcrsHaQkYf~kl 48 (258)
..||.||++.|++++++||. +|.+|+... ..||..||+.+|.+++...
T Consensus 32 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 32 RPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 37999999999999999995 999999864 7999999999999987664
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.63 E-value=3.4e-08 Score=78.93 Aligned_cols=47 Identities=9% Similarity=0.326 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFV----GSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~V----gTRT~~QcrsHaQkYf~k 47 (258)
..||+||++.|++++++||. +|..|+... ..||..||+.+|.+++.+
T Consensus 14 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 14 RPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 37999999999999999995 999999855 789999999999888654
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.59 E-value=5.1e-08 Score=71.58 Aligned_cols=43 Identities=14% Similarity=0.421 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHH---HHhCCCCHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIE---DFVGSKTVIQIRSHAQK 43 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA---~~VgTRT~~QcrsHaQk 43 (258)
..||+||++.|++++++||..|++|+ .++..||...++.+|.+
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 37999999999999999999999999 58889999999997653
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.57 E-value=7.7e-08 Score=78.63 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDR-DWKKIEDFV----GSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGr-dWkkIA~~V----gTRT~~QcrsHaQkYf~kl 48 (258)
..||.||++.|++++++||. +|..|+... ..||..||+.+|.++....
T Consensus 18 ~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 37999999999999999995 999999885 7899999999999987664
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.37 E-value=1.4e-07 Score=85.06 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhCcc------HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDRD------WKKIEDFVGSKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrd------WkkIA~~VgTRT~~QcrsHaQkYf~k 47 (258)
.||+||++.+++++++||.. |..||+++++||..|||+||..|+.+
T Consensus 10 ~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 10 SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999963 99999999999999999999988644
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.77 E-value=6.5e-05 Score=58.90 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFV-----GSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~V-----gTRT~~QcrsHaQkYf~kl~k~ 51 (258)
+.||.||.+.|++.+++||..|..|+... +.||.+++|+|+-..-.++.+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999887 5799999999987666666543
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.57 E-value=7.4e-05 Score=53.58 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHh--------C-ccHHHHHH-HhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLF--------D-RDWKKIED-FVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~y--------G-rdWkkIA~-~VgTRT~~QcrsHaQkYf 45 (258)
.||+||+..+++.|..| | .-|+.+|+ .+..+|..++|.||.|++
T Consensus 4 ~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 4 AFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 69999999999999999 5 48999999 899999999999998874
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.41 E-value=2.1e-05 Score=76.78 Aligned_cols=42 Identities=17% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQ 42 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQ 42 (258)
+.||++|..+|.++|.+||++|..|+++|++||..+|..||-
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY 231 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYY 231 (482)
T ss_dssp ------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhc
Confidence 469999999999999999999999999999999999999864
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.26 E-value=0.0003 Score=65.14 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
.||..+-..|+.|+.+||+ +|..||..|++||..+|+.|++-|+.+.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 5999999999999999997 9999999999999999999988776655
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.25 E-value=0.00078 Score=53.00 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHhCc---cHHHHHHHhCCCCHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR---DWKKIEDFVGSKTVIQIRSHAQKYF 45 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr---dWkkIA~~VgTRT~~QcrsHaQkYf 45 (258)
.||.||+..+|.+.++-|. .|..||+.+|+||+.||+.|.|..-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5999999999999999995 9999999999999999999988653
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.51 E-value=0.0076 Score=47.26 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 040811 1 ESWTDEEHDKFLEALQLFDRDWKKIEDFV-----GSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yGrdWkkIA~~V-----gTRT~~QcrsHaQkYf~kl~k~ 51 (258)
..||.||.+.|.+..++|+-.|.-|+... +.||.++++.|+-..-.++.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999999999999654 3799999999987777776553
No 52
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.41 E-value=0.00053 Score=51.34 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHhCc---cHHHHHHHhCCCCHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR---DWKKIEDFVGSKTVIQIRSHAQKY 44 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr---dWkkIA~~VgTRT~~QcrsHaQkY 44 (258)
.||.||+..+|...++-|. .|..||+.+ +||+.||..|+|..
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 5999999999999999995 999999999 89999999987754
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.13 E-value=0.0095 Score=44.45 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHhC----------ccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Q 040811 1 ESWTDEEHDKFLEALQLFD----------RDWKKIEDFVG----SKTVIQIRSHAQKYFLK 47 (258)
Q Consensus 1 e~WT~eEh~~FLeaL~~yG----------rdWkkIA~~Vg----TRT~~QcrsHaQkYf~k 47 (258)
..||.+|...||++..... ..|..||+.+. .||+.||+..+.+-...
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3799999999999986532 28999997765 79999999987755433
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.69 E-value=0.018 Score=48.75 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhC---ccHHHHHHH--hCCCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFD---RDWKKIEDF--VGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG---rdWkkIA~~--VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.||+.|...|+.|+.+|| .+|..|++. +..||...++.++..+.....+
T Consensus 9 ~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 9 GFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp CSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999999 489999865 5589999999988877665433
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.12 E-value=0.021 Score=54.32 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCc-cHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFDR-DWKKIEDFVG-SKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGr-dWkkIA~~Vg-TRT~~QcrsHaQkYf~kl 48 (258)
.||..+=..|+.|+.+||+ +...||..|+ +||..+|+.++.-|+.+.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 6999999999999999997 7999999998 999999998877665443
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.91 E-value=0.041 Score=50.90 Aligned_cols=50 Identities=12% Similarity=0.322 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHhC----ccHHHHH------------HHhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 2 SWTDEEHDKFLEALQLFD----RDWKKIE------------DFVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG----rdWkkIA------------~~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
.||++||..||-+|.+|| ++|..|- -|+.+||+.++..|++--...+.+.
T Consensus 214 ~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 214 NYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp SCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999 5999996 3888999999999998666556554
No 57
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=93.24 E-value=0.11 Score=40.35 Aligned_cols=54 Identities=28% Similarity=0.542 Sum_probs=37.4
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCC-----CHHHHHHHHHHHHH---HHhhcCCcCCCCCCCCCC
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSK-----TVIQIRSHAQKYFL---KVQKNGTIAHVPPPRPKR 64 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTR-----T~~QcrsHaQkYf~---kl~k~g~~~~lP~p~~kR 64 (258)
|-.+|...| +.|..|+..+|-- ...++|.||++|+. +..+......+|+..||+
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 445566777 3899999998832 24689999999943 333344457788877764
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.11 E-value=0.059 Score=45.59 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHHH--H------------hCCCCHHHHHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIED--F------------VGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA~--~------------VgTRT~~QcrsHaQkYf~kl 48 (258)
.||++|+..||.|+.+|| ++|..|-. . ..+.+..++..|+. |++++
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 499999999999999999 89999964 1 12345677888876 55553
No 59
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.38 E-value=0.13 Score=46.80 Aligned_cols=25 Identities=32% Similarity=0.765 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHhC-ccHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD-RDWKKIE 26 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG-rdWkkIA 26 (258)
.|+.+|+..||.||-+|| ++|..|-
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 499999999999999999 8999986
No 60
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=86.75 E-value=1.1 Score=40.46 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=25.0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 21 DWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 21 dWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
-|+.||++.+.+|...+|.||.|+..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999999876553
No 61
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=81.10 E-value=2.3 Score=33.74 Aligned_cols=40 Identities=8% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSKT----VIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTRT----~~QcrsHaQkYf~kl~k 50 (258)
|-.+|...| +.|..|+..+|--+ ..++|.||.+|+..-..
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 445566666 38999999998654 57899999999655433
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.78 E-value=3.7 Score=37.20 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhC---ccHHHHH--HHhCCCCHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD---RDWKKIE--DFVGSKTVIQIRSHAQK 43 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG---rdWkkIA--~~VgTRT~~QcrsHaQk 43 (258)
.||+.|-..|+.++.+|| .+|..|+ .-+..|+...++.-++.
T Consensus 5 ~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 5 SIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 699999999999999999 4899997 45668998887755443
No 63
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=77.53 E-value=2.6 Score=33.04 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSKTVIQIRSHAQKYFLKV 48 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTRT~~QcrsHaQkYf~kl 48 (258)
|-.+|...| +.|..|+..+|-....++|.||.+|+..-
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 344566666 38999999999877899999999996543
No 64
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=77.29 E-value=5.5 Score=30.44 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSKT----VIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTRT----~~QcrsHaQkYf~kl~k 50 (258)
|-.++.+.| +.|..|+..+|--. ..++|.||.+|+..-..
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 344566666 48999999998644 57899999999766544
No 65
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=75.88 E-value=7.8 Score=36.80 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhC----ccHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 2 SWTDEEHDKFLEALQLFD----RDWKKIED------------FVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG----rdWkkIA~------------~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
.||++|+.-||-+|.+|| ++|..|-. |+.+||+.++..|..--...+.+.
T Consensus 230 ~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 230 TYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999 58999943 377999999999987666666664
No 66
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.10 E-value=6.4 Score=31.14 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCCC----HHHHHHHHHHHHHHHhhc
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSKT----VIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTRT----~~QcrsHaQkYf~kl~k~ 51 (258)
|-.+|.+.| +.|+.|+..+|-.+ ..++|.||++|+..-...
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~ 99 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLF 99 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 445566666 38999999998643 468999999997665443
No 67
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=70.38 E-value=5.3 Score=31.34 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--------ccHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 040811 10 KFLEALQLFD--------RDWKKIEDFVGSKT----VIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 10 ~FLeaL~~yG--------rdWkkIA~~VgTRT----~~QcrsHaQkYf~kl~k 50 (258)
+|-.+|...| +.|..|+..+|-.. ..++|.||++|+..-..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3445667777 38999999988644 67899999999655443
No 68
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=70.29 E-value=4.8 Score=32.12 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=27.1
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 20 RDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 20 rdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
+.|+.|+..+|-....++|.+|.+|+..-..
T Consensus 70 k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 4899999999987799999999999777655
No 69
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=64.88 E-value=5.5 Score=29.84 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=23.1
Q ss_pred ccHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Q 040811 20 RDWKKIEDFVGSKT----VIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 20 rdWkkIA~~VgTRT----~~QcrsHaQkYf~kl~ 49 (258)
+.|..|++.+|-.. ..++|.||++|+..-.
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 48999999988532 6789999998865543
No 70
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=64.53 E-value=13 Score=25.45 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCC
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgT 31 (258)
-|.+.+.++|+.+|+++.+.|+.+|-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 47788899999999999999999996
No 71
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=62.29 E-value=7.6 Score=29.59 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhC---c-cH------------HHHHHHhC-----CCCHHHHHHHHHHH
Q 040811 2 SWTDEEHDKFLEALQLFD---R-DW------------KKIEDFVG-----SKTVIQIRSHAQKY 44 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yG---r-dW------------kkIA~~Vg-----TRT~~QcrsHaQkY 44 (258)
-|.++=+..|++||..|- + .+ .-|+.||- .||..||-||-|-.
T Consensus 8 vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 8 VWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp CSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 599999999999999884 2 11 11444443 69999999998743
No 72
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=61.76 E-value=7.3 Score=30.89 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSK-----TVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTR-----T~~QcrsHaQkYf~kl~k 50 (258)
|-.+|...| +.|..|+..+|-. ...++|.||.+|+.....
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344566666 4899999999842 267899999999665443
No 73
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=58.98 E-value=9.4 Score=31.07 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHhC--------ccHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhh
Q 040811 11 FLEALQLFD--------RDWKKIEDFVGSKT-----VIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 11 FLeaL~~yG--------rdWkkIA~~VgTRT-----~~QcrsHaQkYf~kl~k 50 (258)
|-.+|.+.| +.|..|+..+|-.. ..++|.+|++|+..-..
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 445566676 38999999988532 57899999999555433
No 74
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=53.50 E-value=12 Score=29.88 Aligned_cols=41 Identities=15% Similarity=0.435 Sum_probs=29.7
Q ss_pred HHHHHHHHhC--------ccHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 040811 10 KFLEALQLFD--------RDWKKIEDFVGSK-----TVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 10 ~FLeaL~~yG--------rdWkkIA~~VgTR-----T~~QcrsHaQkYf~kl~k 50 (258)
+|-.+|.+.| +.|+.|+..+|-- ...++|.||.||+..-..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 4455666777 4899999988732 357899999999766443
No 75
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.75 E-value=46 Score=21.87 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.+++.|.+.|.. .-..|..++.||+.+|- |...|+.+..+-..++.+
T Consensus 15 ~L~~~~r~il~l-~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLL-TQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHH-HHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHH-HHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 355556555543 22457799999999987 777888776666666644
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=51.81 E-value=25 Score=25.76 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHH
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 43 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQk 43 (258)
-|...+.++|+++|++..+.|+.+|- +...+..+.++
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~LGI-sr~tL~rklkk 87 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLLGW-GAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 46778889999999999999999996 33344333333
No 77
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=44.21 E-value=29 Score=25.70 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCccHHHHHHHhCC
Q 040811 5 DEEHDKFLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 5 ~eEh~~FLeaL~~yGrdWkkIA~~VgT 31 (258)
+-|.+.+.++|+++|++..+.|+.+|-
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 346777889999999999999999996
No 78
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=43.60 E-value=69 Score=21.23 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|..+-+.++..
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Confidence 467778777766 4 567799999999987 888888887777666643
No 79
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.39 E-value=1.1e+02 Score=22.22 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKN 51 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~ 51 (258)
..|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|..+-+.++...
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 356777776665 4 678899999999987 8889999888887777543
No 80
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.33 E-value=89 Score=22.76 Aligned_cols=44 Identities=18% Similarity=0.034 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
-|+.|.+.|.-.. .|..-+.||+.++- +..-|+.|..+-+.|+.
T Consensus 30 Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 30 LTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp CCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 4666766665433 78899999999986 88999999888877764
No 81
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.24 E-value=69 Score=22.61 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 2 SWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 2 ~WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
..|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|..+-+.++..
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcC
Confidence 357777777665 4 567899999999986 888888887777666643
No 82
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=35.52 E-value=61 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCC
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgT 31 (258)
-|...+.++|+.+|++..+.|+.+|-
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 46778889999999999999999996
No 83
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.83 E-value=39 Score=26.87 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 040811 6 EEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGT 53 (258)
Q Consensus 6 eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g~ 53 (258)
+-+.++|.+|++-|+ .|..||+.+|- |...|+.|.+ ++...|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~----~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQ----KMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHH----HHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCCC
Confidence 456788999999887 99999999997 8888888654 4555553
No 84
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.33 E-value=1.1e+02 Score=22.65 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.+.+.|. +-..|...+.||+.+|- |...|+.+..+-..++.+
T Consensus 113 ~~r~v~~--~~~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 113 FEKEVLT--YLIRGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HHHHHHH--HHTTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 3444444 33456799999999986 666676665555555443
No 85
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.16 E-value=1e+02 Score=20.71 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
.|+.|.+.|.. + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 45666666654 4 557799999999986 88888888776666654
No 86
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=31.05 E-value=90 Score=24.20 Aligned_cols=62 Identities=13% Similarity=0.343 Sum_probs=39.4
Q ss_pred ChHHHHhhhccccCCCchhHHHhhhcCC-----cchHHHHHHHHHHhhhhCCCCCchhHHhhhhcccCCC
Q 040811 174 DFAEVYSFIGSVFDPDTKGHVQKLKEMD-----PINFETVLLLMRNLSLNLSSPDFEPIRNVLSSYDAKS 238 (258)
Q Consensus 174 dFaqVY~FigsvFdp~~~~hlq~Lk~Md-----pi~~eTvlLlmrNLs~NL~sp~fe~~~~~ls~y~~~~ 238 (258)
+|..|.+-+| +.| +...++++..+| .|+++..+-+|..+.........+..++.+..||.+.
T Consensus 32 El~~~lr~lG--~~~-t~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~ 98 (159)
T 3i5g_C 32 KVGDLLRCLG--MNP-TEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREG 98 (159)
T ss_dssp GHHHHHHHTT--CCC-CHHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcC--CCC-CHHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCC
Confidence 5667776666 333 344566655444 4777777777777665555555667777777777664
No 87
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=27.30 E-value=42 Score=24.80 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 6 EEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 6 eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
+|-.++|. |+||+..|..+|- +..+|+.
T Consensus 13 ~~l~~lL~-----g~dW~~LA~~Lg~-~~~~I~~ 40 (85)
T 1ngr_A 13 EEVEKLLN-----GDTWRHLAGELGY-QPEHIDS 40 (85)
T ss_dssp HHHHHHSC-----TTHHHHHHHHTTC-CHHHHHH
T ss_pred HHHHHHhC-----cCCHHHHHHHcCC-CHHHHHH
Confidence 45555555 9999999999998 4445544
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.32 E-value=2e+02 Score=21.32 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
-|+.|.+.|.- + ..|...+.||+.++- +..-|+.|..+-+.++.-
T Consensus 35 Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 35 LSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp CCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 46777777654 3 368899999999987 888899988777777643
No 89
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.28 E-value=1.1e+02 Score=20.60 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCC
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGS 31 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgT 31 (258)
..+-|.+.+.++|+++ ++..+.|+.+|-
T Consensus 18 l~~~Er~~I~~aL~~~-gn~~~aA~~LGI 45 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY-PSTRKLAQRLGV 45 (61)
T ss_dssp CSHHHHHHHHHHHHHS-CSHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHhCC
Confidence 3456888899999999 788899999995
No 90
>2o9x_A Reductase, assembly protein; SAD, RAMP, helical protein, structural genomics, PSI, protei structure initiative; 3.40A {Archaeoglobus fulgidus} SCOP: a.184.1.1
Probab=24.73 E-value=38 Score=27.82 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.7
Q ss_pred CCChHHHHhhhccccCCCchhHHHhhhcC
Q 040811 172 IPDFAEVYSFIGSVFDPDTKGHVQKLKEM 200 (258)
Q Consensus 172 ~pdFaqVY~FigsvFdp~~~~hlq~Lk~M 200 (258)
.-.++.+|++++.+|.+-+...++.|.++
T Consensus 20 ~~~ra~~y~lLs~Lf~~P~~~~l~~l~~~ 48 (181)
T 2o9x_A 20 QGHMREHLKLFSLIFSYPDEDKLGKAIAL 48 (181)
T ss_dssp CCCHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34799999999999997777777777654
No 91
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.54 E-value=2e+02 Score=20.73 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=33.4
Q ss_pred HHHHHHHHHHh-----Cc--cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCcCCCC
Q 040811 8 HDKFLEALQLF-----DR--DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVP 58 (258)
Q Consensus 8 h~~FLeaL~~y-----Gr--dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g~~~~lP 58 (258)
.+..|+.|+.+ |. .-..||+.+|- |...|+. |+..|.+.|.....|
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecC
Confidence 45677778777 54 78899999999 7666665 677888877654433
No 92
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.68 E-value=1.3e+02 Score=21.40 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 3 WTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 3 WT~eEh~~FLeaL~~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
.|+.|.+.|.- + ..|...+.||+.+|- +..-|+.|..+-+.++..
T Consensus 30 Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 30 LTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp CCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 46667666655 3 568899999999986 888888887777666643
No 93
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.41 E-value=1.5e+02 Score=23.92 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 040811 6 EEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGT 53 (258)
Q Consensus 6 eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g~ 53 (258)
+-+.++|.+|+..|+ .|..||+.+|- +...|+.| ..++...|.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~r----l~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHER----IRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHH----HHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 446688999999886 99999999996 88888875 455566554
No 94
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=22.19 E-value=1.6e+02 Score=22.26 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCccHHHHHHHhCCCCHHHHHH
Q 040811 7 EHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRS 39 (258)
Q Consensus 7 Eh~~FLeaL~~yGrdWkkIA~~VgTRT~~Qcrs 39 (258)
-+..|...-..-|.+|+.+|..+|- |..+|..
T Consensus 17 ~~~~~~~ia~~lg~~Wk~LAr~Lg~-s~~~I~~ 48 (111)
T 2yqf_A 17 AEMKMAVISEHLGLSWAELARELQF-SVEDINR 48 (111)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHTTC-CHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCC-CHHHHHH
Confidence 3445555557779999999999986 4444443
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.12 E-value=1.9e+02 Score=19.49 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHH---hCccHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 040811 4 TDEEHDKFLEALQL---FDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQ 49 (258)
Q Consensus 4 T~eEh~~FLeaL~~---yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~ 49 (258)
++.|.+.|..-.-. .|..|+.||+.+|- |...|+.+-.+-+.++.
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 45555555443321 35799999999986 66777766666666665
No 96
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.48 E-value=1.6e+02 Score=19.54 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHH---HhCccHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 040811 4 TDEEHDKFLEALQ---LFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQK 50 (258)
Q Consensus 4 T~eEh~~FLeaL~---~yGrdWkkIA~~VgTRT~~QcrsHaQkYf~kl~k 50 (258)
++.|.+.|....- ..|..++.||+.+|- |...|+.|..+-+.++..
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgi-s~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDV-TRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 4455554443321 136799999999986 777788776665555543
No 97
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.28 E-value=1.8e+02 Score=22.17 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCc-cHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 040811 6 EEHDKFLEALQLFDR-DWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGT 53 (258)
Q Consensus 6 eEh~~FLeaL~~yGr-dWkkIA~~VgTRT~~QcrsHaQkYf~kl~k~g~ 53 (258)
+-+.++|..|+..|+ .|..||+.+|- +...|+.+ ..++...|.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARR----IDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHH----HHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 345678889998886 99999999997 77777775 445555553
Done!