Query 040813
Match_columns 401
No_of_seqs 130 out of 1036
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02282 phosphoglycerate kina 100.0 1E-150 3E-155 1140.3 41.5 401 1-401 1-401 (401)
2 PLN03034 phosphoglycerate kina 100.0 1E-149 3E-154 1147.3 42.1 399 2-400 77-475 (481)
3 COG0126 Pgk 3-phosphoglycerate 100.0 8E-149 2E-153 1112.2 36.2 389 1-401 1-393 (395)
4 cd00318 Phosphoglycerate_kinas 100.0 3E-147 7E-152 1115.4 41.9 389 10-400 1-397 (397)
5 PRK00073 pgk phosphoglycerate 100.0 1E-146 2E-151 1109.0 40.6 388 8-400 2-389 (389)
6 PTZ00005 phosphoglycerate kina 100.0 2E-144 5E-149 1099.5 42.0 394 5-401 3-417 (417)
7 PRK13962 bifunctional phosphog 100.0 2E-141 3E-146 1127.3 40.9 391 6-400 2-393 (645)
8 KOG1367 3-phosphoglycerate kin 100.0 5E-142 1E-146 1032.5 29.7 396 3-401 2-415 (416)
9 PF00162 PGK: Phosphoglycerate 100.0 3E-141 7E-146 1070.1 36.1 378 9-390 1-384 (384)
10 TIGR01663 PNK-3'Pase polynucle 83.1 46 0.001 36.2 15.8 201 42-266 199-450 (526)
11 COG0223 Fmt Methionyl-tRNA for 78.2 8.2 0.00018 39.2 7.6 48 45-93 13-61 (307)
12 PRK05826 pyruvate kinase; Prov 74.5 22 0.00048 38.0 10.0 305 45-371 18-397 (465)
13 cd04256 AAK_P5CS_ProBA AAK_P5C 73.9 8 0.00017 38.5 6.2 51 17-67 8-58 (284)
14 TIGR03590 PseG pseudaminic aci 73.1 97 0.0021 30.3 18.1 174 19-215 1-195 (279)
15 PRK00005 fmt methionyl-tRNA fo 72.0 20 0.00044 35.8 8.7 81 44-125 11-92 (309)
16 TIGR00460 fmt methionyl-tRNA f 67.8 28 0.0006 35.0 8.6 68 44-112 11-79 (313)
17 PRK06988 putative formyltransf 67.5 25 0.00054 35.4 8.2 65 44-112 13-78 (312)
18 PF13344 Hydrolase_6: Haloacid 67.4 21 0.00046 29.7 6.5 71 39-118 13-86 (101)
19 PRK02006 murD UDP-N-acetylmura 66.6 20 0.00044 37.9 7.8 52 182-233 378-430 (498)
20 PRK04302 triosephosphate isome 65.9 81 0.0018 29.8 11.0 42 48-93 77-118 (223)
21 cd02068 radical_SAM_B12_BD B12 62.5 45 0.00097 28.4 7.8 73 313-392 38-116 (127)
22 PRK14994 SAM-dependent 16S rib 62.1 60 0.0013 32.5 9.7 150 42-203 70-237 (287)
23 PRK00683 murD UDP-N-acetylmura 62.1 32 0.00069 35.6 8.0 49 182-230 303-352 (418)
24 PRK06801 hypothetical protein; 57.2 2.1E+02 0.0046 28.6 12.6 76 140-234 168-244 (286)
25 PRK08125 bifunctional UDP-gluc 54.2 56 0.0012 36.0 8.7 80 44-127 11-91 (660)
26 PRK02705 murD UDP-N-acetylmura 51.9 66 0.0014 33.4 8.4 42 191-232 348-390 (459)
27 PF08645 PNK3P: Polynucleotide 51.5 28 0.00061 31.5 4.9 51 44-94 33-86 (159)
28 PLN02716 nicotinate-nucleotide 50.7 23 0.00051 36.0 4.6 64 76-140 185-257 (308)
29 COG0647 NagD Predicted sugar p 50.6 43 0.00094 33.3 6.5 76 36-118 20-97 (269)
30 TIGR03471 HpnJ hopanoid biosyn 49.6 66 0.0014 33.9 8.1 85 304-395 58-145 (472)
31 COG0112 GlyA Glycine/serine hy 48.9 88 0.0019 33.1 8.5 199 118-358 89-311 (413)
32 PRK04308 murD UDP-N-acetylmura 47.9 66 0.0014 33.4 7.7 44 187-230 338-382 (445)
33 PF10087 DUF2325: Uncharacteri 47.4 55 0.0012 26.9 5.7 18 248-265 61-78 (97)
34 TIGR01486 HAD-SF-IIB-MPGP mann 46.5 22 0.00049 33.8 3.7 33 34-68 8-42 (256)
35 COG0263 ProB Glutamate 5-kinas 46.4 68 0.0015 33.4 7.2 63 17-81 6-77 (369)
36 PLN02285 methionyl-tRNA formyl 45.8 86 0.0019 32.0 7.9 47 45-92 18-71 (334)
37 TIGR02461 osmo_MPG_phos mannos 45.2 25 0.00054 33.4 3.7 33 34-68 8-41 (225)
38 COG0066 LeuD 3-isopropylmalate 43.3 7 0.00015 37.1 -0.4 52 116-173 41-100 (191)
39 PRK12314 gamma-glutamyl kinase 42.6 63 0.0014 31.7 6.2 47 18-65 10-56 (266)
40 smart00732 YqgFc Likely ribonu 41.8 40 0.00088 26.9 4.0 59 41-100 35-95 (99)
41 cd04814 PA_M28_1 PA_M28_1: Pro 41.1 79 0.0017 28.5 6.1 57 8-66 39-100 (142)
42 TIGR01656 Histidinol-ppas hist 40.6 40 0.00087 29.5 4.1 27 42-68 29-55 (147)
43 PF13793 Pribosyltran_N: N-ter 40.4 1.2E+02 0.0025 26.2 6.9 65 14-86 44-114 (116)
44 COG0626 MetC Cystathionine bet 40.0 89 0.0019 32.9 7.1 65 49-122 95-159 (396)
45 PF02310 B12-binding: B12 bind 40.0 1.2E+02 0.0026 25.1 6.7 67 314-386 51-120 (121)
46 TIGR01460 HAD-SF-IIA Haloacid 39.9 86 0.0019 29.8 6.5 47 41-94 15-61 (236)
47 PRK05337 beta-hexosaminidase; 39.7 1.3E+02 0.0029 30.7 8.2 95 23-121 176-282 (337)
48 COG1433 Uncharacterized conser 39.2 53 0.0011 29.0 4.5 55 46-115 55-109 (121)
49 TIGR01092 P5CS delta l-pyrroli 38.7 60 0.0013 36.5 6.0 51 17-68 7-61 (715)
50 cd04820 PA_M28_1_1 PA_M28_1_1: 38.2 68 0.0015 28.8 5.2 52 8-63 41-93 (137)
51 TIGR01664 DNA-3'-Pase DNA 3'-p 37.9 67 0.0014 29.1 5.2 47 36-84 34-84 (166)
52 cd04822 PA_M28_1_3 PA_M28_1_3: 37.8 70 0.0015 29.2 5.2 58 9-68 40-102 (151)
53 cd07410 MPP_CpdB_N Escherichia 37.1 84 0.0018 30.4 6.1 52 43-94 170-223 (277)
54 PRK03803 murD UDP-N-acetylmura 36.4 1.5E+02 0.0033 30.7 8.2 43 191-233 344-387 (448)
55 COG4100 Cystathionine beta-lya 35.6 65 0.0014 33.2 5.0 79 15-104 127-215 (416)
56 cd04821 PA_M28_1_2 PA_M28_1_2: 34.8 1.3E+02 0.0029 27.5 6.6 58 7-66 40-102 (157)
57 PRK10530 pyridoxal phosphate ( 33.9 43 0.00093 31.7 3.4 34 44-84 24-57 (272)
58 cd06259 YdcF-like YdcF-like. Y 33.4 2.2E+02 0.0048 24.5 7.6 70 194-263 2-95 (150)
59 PRK01045 ispH 4-hydroxy-3-meth 33.1 1.9E+02 0.0042 29.3 8.0 184 17-213 66-279 (298)
60 PRK08227 autoinducer 2 aldolas 32.9 40 0.00087 33.5 3.1 60 181-254 182-242 (264)
61 COG0761 lytB 4-Hydroxy-3-methy 32.9 89 0.0019 31.6 5.5 198 7-215 58-283 (294)
62 PRK12852 groEL chaperonin GroE 32.5 6.8E+02 0.015 27.2 13.3 168 55-233 216-424 (545)
63 PF09587 PGA_cap: Bacterial ca 32.2 1E+02 0.0023 29.5 5.8 52 42-95 170-222 (250)
64 TIGR01501 MthylAspMutase methy 32.0 1.6E+02 0.0034 26.4 6.4 89 293-387 28-128 (134)
65 PRK02261 methylaspartate mutas 32.0 1.7E+02 0.0037 25.9 6.7 79 293-380 30-120 (137)
66 KOG1014 17 beta-hydroxysteroid 31.7 99 0.0022 31.6 5.7 66 49-122 66-135 (312)
67 cd07409 MPP_CD73_N CD73 ecto-5 31.1 50 0.0011 32.4 3.4 27 42-68 168-195 (281)
68 PRK12849 groEL chaperonin GroE 30.8 5.8E+02 0.013 27.8 11.8 40 192-233 374-423 (542)
69 PRK01390 murD UDP-N-acetylmura 30.5 1.7E+02 0.0037 30.5 7.5 42 192-233 354-395 (460)
70 cd08162 MPP_PhoA_N Synechococc 30.4 53 0.0011 33.1 3.5 23 44-66 195-218 (313)
71 cd07381 MPP_CapA CapA and rela 30.3 78 0.0017 29.9 4.5 55 38-94 157-212 (239)
72 KOG0781 Signal recognition par 30.0 77 0.0017 34.5 4.7 98 34-144 390-494 (587)
73 PRK10017 colanic acid biosynth 29.9 5.3E+02 0.011 27.2 11.0 92 39-167 256-347 (426)
74 TIGR00290 MJ0570_dom MJ0570-re 29.5 4.1E+02 0.0089 25.7 9.3 37 288-324 144-191 (223)
75 COG2054 Uncharacterized archae 29.5 96 0.0021 29.7 4.8 95 288-394 107-205 (212)
76 PRK09250 fructose-bisphosphate 29.1 56 0.0012 33.9 3.4 71 180-261 267-343 (348)
77 PRK06247 pyruvate kinase; Prov 28.9 57 0.0012 35.2 3.6 207 46-270 20-276 (476)
78 PF04122 CW_binding_2: Putativ 28.6 3.1E+02 0.0066 21.9 7.7 80 35-122 2-83 (92)
79 TIGR02026 BchE magnesium-proto 28.6 2E+02 0.0043 30.7 7.7 71 304-381 51-124 (497)
80 PRK00553 ribose-phosphate pyro 28.4 2.5E+02 0.0053 28.8 8.0 66 14-87 53-125 (332)
81 PRK05581 ribulose-phosphate 3- 27.6 2.5E+02 0.0055 25.8 7.4 78 132-226 122-201 (220)
82 PRK14558 pyrH uridylate kinase 27.4 1.4E+02 0.003 28.4 5.7 49 18-66 1-49 (231)
83 TIGR01662 HAD-SF-IIIA HAD-supe 27.4 2.6E+02 0.0057 23.4 6.9 27 40-66 25-51 (132)
84 TIGR01087 murD UDP-N-acetylmur 26.8 2.3E+02 0.005 29.1 7.6 54 180-233 320-374 (433)
85 PRK01259 ribose-phosphate pyro 26.7 2.3E+02 0.0051 28.5 7.4 66 14-87 44-116 (309)
86 PRK00934 ribose-phosphate pyro 26.6 3.9E+02 0.0084 26.5 8.9 72 14-95 43-121 (285)
87 PLN02461 Probable pyruvate kin 26.5 86 0.0019 34.1 4.5 102 45-150 35-148 (511)
88 PRK02269 ribose-phosphate pyro 26.4 3E+02 0.0065 27.9 8.2 66 14-87 49-121 (320)
89 TIGR03609 S_layer_CsaB polysac 26.4 1.7E+02 0.0036 28.5 6.2 28 133-167 243-270 (298)
90 TIGR03639 cas1_NMENI CRISPR-as 26.1 40 0.00086 33.4 1.8 57 14-70 13-73 (278)
91 PLN02417 dihydrodipicolinate s 25.9 2.7E+02 0.0059 27.3 7.6 116 28-151 11-135 (280)
92 PF00582 Usp: Universal stress 25.9 2E+02 0.0043 23.0 5.7 46 48-95 94-139 (140)
93 PF05445 Pox_ser-thr_kin: Poxv 25.7 33 0.00073 36.0 1.2 14 367-380 80-93 (434)
94 PRK13402 gamma-glutamyl kinase 25.5 1.6E+02 0.0034 30.6 6.0 46 18-64 6-51 (368)
95 TIGR01452 PGP_euk phosphoglyco 25.4 2E+02 0.0044 27.9 6.6 80 30-118 7-91 (279)
96 PRK10834 vancomycin high tempe 25.3 2E+02 0.0044 28.2 6.4 67 186-253 39-128 (239)
97 COG0329 DapA Dihydrodipicolina 25.3 2E+02 0.0044 28.7 6.6 53 28-88 14-67 (299)
98 KOG3350 Uncharacterized conser 25.2 81 0.0017 30.2 3.5 50 13-63 110-172 (217)
99 COG4464 CapC Capsular polysacc 25.1 1.5E+02 0.0033 29.1 5.4 86 39-127 16-108 (254)
100 PRK07199 phosphoribosylpyropho 25.0 2.3E+02 0.005 28.4 7.0 64 14-86 46-116 (301)
101 cd07405 MPP_UshA_N Escherichia 25.0 75 0.0016 31.3 3.5 26 42-67 159-185 (285)
102 PHA02530 pseT polynucleotide k 25.0 1.3E+02 0.0027 29.3 5.0 51 16-66 155-213 (300)
103 cd00311 TIM Triosephosphate is 25.0 6.5E+02 0.014 24.5 10.5 55 48-105 76-130 (242)
104 COG0703 AroK Shikimate kinase 24.9 26 0.00057 32.7 0.2 24 315-346 2-25 (172)
105 TIGR00746 arcC carbamate kinas 24.8 1.4E+02 0.0031 30.2 5.5 51 18-69 1-54 (310)
106 smart00854 PGA_cap Bacterial c 24.7 1.5E+02 0.0032 28.2 5.4 53 41-95 158-211 (239)
107 PRK12726 flagellar biosynthesi 24.6 5.7E+02 0.012 27.2 9.9 172 57-257 206-400 (407)
108 TIGR02463 MPGP_rel mannosyl-3- 24.6 81 0.0018 29.1 3.5 44 34-84 8-53 (221)
109 TIGR01027 proB glutamate 5-kin 24.6 1.7E+02 0.0036 30.2 6.0 47 18-65 1-47 (363)
110 PF00702 Hydrolase: haloacid d 24.5 2.2E+02 0.0047 25.4 6.2 64 44-118 131-201 (215)
111 TIGR00730 conserved hypothetic 24.2 84 0.0018 29.2 3.4 53 294-346 99-151 (178)
112 PRK10799 metal-binding protein 24.2 63 0.0014 31.3 2.7 45 48-97 199-243 (247)
113 PRK08187 pyruvate kinase; Vali 24.2 47 0.001 35.9 2.0 107 39-149 134-264 (493)
114 PLN02369 ribose-phosphate pyro 23.9 2.9E+02 0.0062 27.8 7.4 66 14-87 35-107 (302)
115 PRK14104 chaperonin GroEL; Pro 23.9 7.7E+02 0.017 26.9 11.2 151 77-233 233-424 (546)
116 COG0370 FeoB Fe2+ transport sy 23.9 1.7E+02 0.0036 33.0 6.1 79 35-116 87-168 (653)
117 PRK02472 murD UDP-N-acetylmura 23.8 2.6E+02 0.0056 28.8 7.3 40 191-231 342-382 (447)
118 PRK08114 cystathionine beta-ly 23.7 4.6E+02 0.0099 27.4 9.1 77 85-163 122-201 (395)
119 PHA03111 Ser/Thr kinase; Provi 23.6 39 0.00084 35.4 1.2 52 319-380 44-98 (444)
120 PRK13982 bifunctional SbtC-lik 23.5 3E+02 0.0065 29.7 7.8 50 14-63 253-303 (475)
121 PTZ00114 Heat shock protein 60 23.5 8.2E+02 0.018 26.7 11.3 40 192-233 387-436 (555)
122 cd04240 AAK_UC AAK_UC: Unchara 23.4 5E+02 0.011 24.3 8.6 117 191-330 24-145 (203)
123 cd07406 MPP_CG11883_N Drosophi 23.2 90 0.0019 30.1 3.6 27 42-68 157-184 (257)
124 PLN02765 pyruvate kinase 23.2 89 0.0019 34.1 3.8 100 46-149 43-153 (526)
125 PF01902 ATP_bind_4: ATP-bindi 23.1 5.9E+02 0.013 24.4 9.1 38 287-324 143-191 (218)
126 PLN02762 pyruvate kinase compl 23.1 83 0.0018 34.2 3.6 100 46-150 40-153 (509)
127 PTZ00340 O-sialoglycoprotein e 23.1 99 0.0022 31.9 4.0 60 40-102 48-114 (345)
128 KOG3729 Mitochondrial glycerol 22.7 33 0.00072 37.5 0.5 12 20-31 330-341 (715)
129 PRK03958 tRNA 2'-O-methylase; 22.7 1.2E+02 0.0026 28.5 4.2 49 155-221 79-127 (176)
130 TIGR01261 hisB_Nterm histidino 22.6 1.4E+02 0.003 26.9 4.5 24 43-66 32-55 (161)
131 PF06506 PrpR_N: Propionate ca 22.5 1.2E+02 0.0025 27.7 4.0 141 201-386 17-159 (176)
132 PRK01033 imidazole glycerol ph 22.5 7.1E+02 0.015 24.1 12.6 53 44-98 31-83 (258)
133 cd00408 DHDPS-like Dihydrodipi 22.2 2.9E+02 0.0063 26.7 7.0 59 28-94 7-69 (281)
134 PF02421 FeoB_N: Ferrous iron 21.9 70 0.0015 29.2 2.4 67 36-106 85-152 (156)
135 PLN00139 hypothetical protein; 21.9 49 0.0011 33.6 1.5 19 108-126 286-304 (320)
136 TIGR01470 cysG_Nterm siroheme 21.5 1.5E+02 0.0033 27.9 4.7 35 13-63 5-39 (205)
137 PF04015 DUF362: Domain of unk 21.4 5.6E+02 0.012 23.5 8.4 109 19-154 1-116 (206)
138 PRK02048 4-hydroxy-3-methylbut 21.2 1.4E+02 0.0031 33.2 4.9 212 35-263 33-292 (611)
139 PRK15389 fumarate hydratase; P 21.0 4.6E+02 0.01 28.9 8.6 47 252-309 397-444 (536)
140 PRK00013 groEL chaperonin GroE 21.0 1.1E+03 0.024 25.7 12.8 50 182-233 363-423 (542)
141 cd07408 MPP_SA0022_N Staphyloc 20.9 1.2E+02 0.0025 29.3 3.8 28 42-69 156-185 (257)
142 PRK00694 4-hydroxy-3-methylbut 20.8 1.4E+02 0.003 33.1 4.7 210 35-262 37-295 (606)
143 cd03344 GroEL GroEL_like type 20.7 1.1E+03 0.023 25.5 12.7 40 192-233 372-421 (520)
144 PLN03226 serine hydroxymethylt 20.7 1.9E+02 0.004 30.9 5.6 106 110-220 93-213 (475)
145 cd03416 CbiX_SirB_N Sirohydroc 20.5 1.6E+02 0.0034 23.9 4.0 70 59-131 2-77 (101)
146 PRK13774 formimidoylglutamase; 20.2 2.7E+02 0.0059 27.9 6.4 68 294-362 62-133 (311)
No 1
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=1.3e-150 Score=1140.27 Aligned_cols=401 Identities=93% Similarity=1.344 Sum_probs=390.8
Q ss_pred CCCCCcccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhH
Q 040813 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPL 80 (401)
Q Consensus 1 ~~~~~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~v 80 (401)
|..|+++.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||++.++++||+||
T Consensus 1 ~~~~~~~~ti~d~d~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~v 80 (401)
T PLN02282 1 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPL 80 (401)
T ss_pred CCcccccCChhHhhccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHH
Confidence 56788999999999999999999999999975589999999999999999999999999999999999887678999999
Q ss_pred HHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccch
Q 040813 81 VPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHAST 160 (401)
Q Consensus 81 a~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~ 160 (401)
|++|+++|+++|.|++||+|++++++|++|++|||+||||+|||+||++|+++|+++||+|||+|||||||+|||+|||+
T Consensus 81 a~~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~~~~~~a~~LA~l~DvyVNDAFg~aHR~haS~ 160 (401)
T PLN02282 81 VPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHAST 160 (401)
T ss_pred HHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEeccccCcccccCHHHHHHHHHHhCcEeeechhhhhhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCC
Q 040813 161 EGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240 (401)
Q Consensus 161 vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~ 240 (401)
+|||+|++|+|||+|||||+++|++++++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+
T Consensus 161 ~gi~~~l~~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~ 240 (401)
T PLN02282 161 EGVAKYLKPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGS 240 (401)
T ss_pred hhhhhhcCccccchHHHHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcCh
Confidence 99999987799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEE
Q 040813 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIW 320 (401)
Q Consensus 241 sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~w 320 (401)
|++|++.++.|++|+++++++|++|+||+||+|+++|+.+++++++++++||+|||++||||+|++.|+++|++|+||||
T Consensus 241 sl~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~w 320 (401)
T PLN02282 241 SLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIW 320 (401)
T ss_pred hhcChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEE
Confidence 99999999999999999999999999999999999998888888888899999999999999999999999999999999
Q ss_pred eCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 321 NGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 321 NGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
|||||+||+++|++||+++++++++.++++++||+|||||++|++++|+.++||||||||||+|+||||++||||+||++
T Consensus 321 NGP~GvfE~~~F~~GT~~l~~aia~~t~~~a~sivGGGdt~aA~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgi~aL~~ 400 (401)
T PLN02282 321 NGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDD 400 (401)
T ss_pred ECCcCCccCcchhHHHHHHHHHHHHhhcCCCEEEEeCcHHHHHHHHcCCcCCceEEeCchHHHHHHHcCCCcchHHHhhc
Confidence 99999999999999999999999997767899999999999999999999999999999999999999999999999986
Q ss_pred C
Q 040813 401 A 401 (401)
Q Consensus 401 ~ 401 (401)
+
T Consensus 401 ~ 401 (401)
T PLN02282 401 A 401 (401)
T ss_pred C
Confidence 4
No 2
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.3e-149 Score=1147.28 Aligned_cols=399 Identities=86% Similarity=1.280 Sum_probs=385.6
Q ss_pred CCCCcccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHH
Q 040813 2 AAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLV 81 (401)
Q Consensus 2 ~~~~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va 81 (401)
|.++|++++++.|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||++.++++||+|||
T Consensus 77 m~~~tl~d~~~~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva 156 (481)
T PLN03034 77 MAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLV 156 (481)
T ss_pred cccCcHhhcchhhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHH
Confidence 44455555555599999999999999999866899999999999999999999999999999999998877789999999
Q ss_pred HHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchh
Q 040813 82 PRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTE 161 (401)
Q Consensus 82 ~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~v 161 (401)
++|+++|+++|+|++||+|++++++|++|++|||+||||+|||+||++|+++|+|+||+|+|+|||||||+|||+|||++
T Consensus 157 ~~Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~haS~v 236 (481)
T PLN03034 157 PRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTE 236 (481)
T ss_pred HHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCcHHHHHHHHhhCCEEEecchhhhHhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCc
Q 040813 162 GVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241 (401)
Q Consensus 162 gi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~s 241 (401)
|||+|++|+|||+||||||++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|
T Consensus 237 Gi~~~l~ps~aG~LmekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~s 316 (481)
T PLN03034 237 GVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSS 316 (481)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchh
Confidence 99999878999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEe
Q 040813 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWN 321 (401)
Q Consensus 242 l~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wN 321 (401)
++|++.++.|++|+++++++|++|+||+||+|+++|+.++++++++.++||+|||++||||+|++.|+++|++|+|||||
T Consensus 317 lvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WN 396 (481)
T PLN03034 317 LVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWN 396 (481)
T ss_pred hcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEE
Confidence 99999999999999999999999999999999999988888888888999999999999999999999999999999999
Q ss_pred CcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 322 GPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 322 GP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
|||||||+++|+.||++|+++|++.+++++|||||||||++|++++|+.++||||||||||+||||||++||||++|++
T Consensus 397 GPmGvFE~~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 475 (481)
T PLN03034 397 GPMGVFEFEKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDE 475 (481)
T ss_pred CCcccccCCcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCccceeEEeCcHHHHHHHHcCCCCcHHHHHhh
Confidence 9999999999999999999999998767899999999999999999999999999999999999999999999999975
No 3
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-149 Score=1112.16 Aligned_cols=389 Identities=63% Similarity=0.980 Sum_probs=371.3
Q ss_pred CCCCCcccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhH
Q 040813 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPL 80 (401)
Q Consensus 1 ~~~~~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~v 80 (401)
||.++++. |.+++|||||||||||||+++ |+|+||+||++++||||||+++||+|||+||||||+++++++||+||
T Consensus 1 ~~~~~~~~---d~~~~gK~VlvRvD~NvP~~d-G~I~dd~RI~a~lpTIk~l~~~ga~Vvl~SHlGRPk~~~~~~SL~pv 76 (395)
T COG0126 1 MMMKKTIL---DLDLAGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRPKEYSDKTSLEPV 76 (395)
T ss_pred CCccchhh---hhcccCCEEEEEeccCCcccC-CeeCCcHHHHHhhHHHHHHHhCCCeEEEEecCCCCCCCCCcccHHHH
Confidence 44444443 346999999999999999986 99999999999999999999999999999999999887799999999
Q ss_pred HHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHH----HHHHHhhcCCEEeeccccccccc
Q 040813 81 VPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRA 156 (401)
Q Consensus 81 a~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~----f~~~LA~l~DvyVNDAFg~aHR~ 156 (401)
|++|+++|+++|+|++||+|++++++|++|++|||+||||+|||+||++++++ |+|+||+|+|+|||||||||||+
T Consensus 77 a~~Ls~ll~~~V~f~~d~~g~~a~~~v~~l~~GevlLLEN~RF~~~E~~~d~~~~~~l~k~la~l~DvfVnDAFgtAHRa 156 (395)
T COG0126 77 AKRLSELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENVRFYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTAHRA 156 (395)
T ss_pred HHHHHHhcCCceEecccccCHHHHHHHhccCCCcEEEEeeccccccccCcchhhHHHHHHHHHhhcCEEEechhHHHHhh
Confidence 99999999999999999999999999999999999999999999999988765 99999999999999999999999
Q ss_pred ccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCC
Q 040813 157 HASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGH 236 (401)
Q Consensus 157 haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~ 236 (401)
|||++||++++ |+|||+||||||++|++++++|+||+++|+|||||||||++|+||+++||+|+|||+||||||+|+|+
T Consensus 157 haS~~g~~~~l-ps~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~ 235 (395)
T COG0126 157 HASTVGFAKFL-PSAAGFLMEKELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGY 235 (395)
T ss_pred ccchhhhhhhc-hhhhhHHHHHHHHHHHHHhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhcc
Confidence 99999999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCC
Q 040813 237 SVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTK 316 (401)
Q Consensus 237 ~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~ak 316 (401)
+||+|++|.+.++.|++||+++++ +|+||+|++|+++|+.+.....++ +||++||++||||+|++.|+++|++||
T Consensus 236 ~vG~sl~E~~~~~~Ak~ll~k~~~---~I~lPvD~~v~~~f~~~~~~~~~~--~i~~~~~~lDIGp~Ti~~~~~~i~~Ak 310 (395)
T COG0126 236 DVGKSLVEFDLIDGAKELLEKAKD---KIVLPVDVVVAKEFSRDAPATVKL--EIPDDLMILDIGPKTIELFAEIIKGAK 310 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCC---cEECcceeEEcccccccccccccc--CCCCCccccccCHHHHHHHHHHHhhCC
Confidence 999999999999999999999877 799999999999998887666554 899999999999999999999999999
Q ss_pred eEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhh
Q 040813 317 TIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVL 396 (401)
Q Consensus 317 tI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~ 396 (401)
||||||||||||+++|++||+++++|++++ +++|||+|||||++|++++|+.|+||||||||||||||||||+||||+
T Consensus 311 tivwNGP~GVfE~~~Fa~GT~~v~~aia~~--~~a~SiiGGGdt~aAi~~~G~~d~~shISTGGGAsLe~leGk~LPgv~ 388 (395)
T COG0126 311 TIVWNGPMGVFEFENFAKGTEEVAKAIAKS--SGAFSIIGGGDTAAAIDKLGLADKISHISTGGGASLEFLEGKELPGVE 388 (395)
T ss_pred EEEEeCCccceecchhhhhHHHHHHHHHhc--CCCeEEECCcHHHHHHHHcCccccCceEecCchHHHHHhcCCCcchHH
Confidence 999999999999999999999999999997 368999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 040813 397 ALDDA 401 (401)
Q Consensus 397 aL~~~ 401 (401)
+|+++
T Consensus 389 aL~~~ 393 (395)
T COG0126 389 ALEES 393 (395)
T ss_pred HHhhc
Confidence 99753
No 4
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=3.2e-147 Score=1115.38 Aligned_cols=389 Identities=66% Similarity=1.050 Sum_probs=378.4
Q ss_pred cccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhHHHHHHhhh
Q 040813 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL 88 (401)
Q Consensus 10 l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g-~~~~~SL~~va~~L~~~L 88 (401)
|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+| .++++||+|||++|+++|
T Consensus 1 i~d~~~~gK~VlvRvD~NvPi~~-g~I~dd~RI~a~lpTI~~l~~~gakvvl~SHlGRP~g~~~~~~SL~~va~~L~~lL 79 (397)
T cd00318 1 IDDLDLKGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEQGAKVVLLSHLGRPKGEPNEKYSLAPVAKALSELL 79 (397)
T ss_pred CCccccCCCEEEEEeccCCCCcC-CeECChHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999975 8999999999999999999999999999999999987 567899999999999999
Q ss_pred CCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCC-------cHHHHHHHhhcCCEEeecccccccccccchh
Q 040813 89 GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKN-------DPEFAKKLASLADLYVNDAFGSAHRAHASTE 161 (401)
Q Consensus 89 ~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~-------~~~f~~~LA~l~DvyVNDAFg~aHR~haS~v 161 (401)
+++|+|++||+|+.++++|++|++|||+||||+|||+||++| +++|+++||+|||+|||||||+|||+|||+|
T Consensus 80 ~~~V~f~~d~~g~~~~~~i~~l~~GeIlLLEN~RF~~~E~~~~~~e~~~~~~~a~~LA~l~DiyVNDAFg~aHR~haS~v 159 (397)
T cd00318 80 GQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEEGKRDDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMV 159 (397)
T ss_pred CCCcEECCCCCCHHHHHHHhcCCCCcEEEEeccCccccccccCCcchhhHHHHHHHHHHhCCEEEEcchhhhhhcccchh
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred hhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCc
Q 040813 162 GVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241 (401)
Q Consensus 162 gi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~s 241 (401)
|||+++ |+|||+||||||++|++++++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+|
T Consensus 160 gi~~~~-~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~s 238 (397)
T cd00318 160 GIALLL-PSAAGFLMEKELKYLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKS 238 (397)
T ss_pred hhhhhh-hhhHHHHHHHHHHHHHHHHcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCcc
Confidence 999977 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEe
Q 040813 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWN 321 (401)
Q Consensus 242 l~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wN 321 (401)
++|++.++.|++|+++++++|++|+||+|++|+++|+.++++.+++.++||+|||++||||+|++.|+++|++|+|||||
T Consensus 239 l~e~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wN 318 (397)
T cd00318 239 LFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAKTIVWN 318 (397)
T ss_pred ccChhhHHHHHHHHHHhHhcCCEEECCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEE
Confidence 99999999999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred CcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 322 GPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 322 GP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
||||+||+++|++||++|++|+++++++++|||||||||++|++++|+.++||||||||||+|+||||++||||++|++
T Consensus 319 GP~GvfE~~~F~~GT~~l~~aia~~~~~~a~sivGGGdt~aa~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgi~aL~~ 397 (397)
T cd00318 319 GPMGVFEFPAFAKGTKAIADAIAAATKAGAFSIIGGGDTAAAAEKFGLADKISHVSTGGGASLELLEGKELPGVAALEE 397 (397)
T ss_pred CCCcCccCCcccHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCceEEcCchHHHHHHHcCCCCchHHhhcC
Confidence 9999999999999999999999997766789999999999999999999999999999999999999999999999974
No 5
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.1e-146 Score=1109.04 Aligned_cols=388 Identities=66% Similarity=1.046 Sum_probs=376.9
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhh
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSEL 87 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~ 87 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||++|+++
T Consensus 2 ~tl~d~d~~gK~VlvRvD~NvPi~~-g~I~dd~RI~~~lpTI~~l~~~gakvvl~sH~gRP~g~~~~~SL~~va~~L~~l 80 (389)
T PRK00073 2 KTLDDLDLKGKRVLVRVDFNVPVKD-GKITDDTRIRAALPTIKYLLEKGAKVILLSHLGRPKGEDPEFSLAPVAKRLSEL 80 (389)
T ss_pred CchHHcccCCCEEEEEeccCCCCcC-CcCCChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCcCHHHHHHHHHHH
Confidence 5677789999999999999999975 899999999999999999999999999999999998866789999999999999
Q ss_pred hCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhccc
Q 040813 88 LGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL 167 (401)
Q Consensus 88 L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l 167 (401)
|+++|+|++||+|++++++|++|++|+|+||||+|||+||++|+++|+++||+|||+|||||||+|||+|||++|||+++
T Consensus 81 L~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~Rf~~~E~~~d~~~a~~LA~l~DiyVNDAFg~aHR~haS~vgi~~~l 160 (389)
T PRK00073 81 LGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKGEEKNDPELAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFL 160 (389)
T ss_pred hCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCHHHHHHHHHHhCCEEEECchhhhhhcccchhchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc
Q 040813 168 KPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDK 247 (401)
Q Consensus 168 ~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~ 247 (401)
|++|||+||||||++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.
T Consensus 161 p~~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~ 240 (389)
T PRK00073 161 KPAAAGFLMEKELEALGKALENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDL 240 (389)
T ss_pred chhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhh
Confidence 65999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCccccc
Q 040813 248 LDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVF 327 (401)
Q Consensus 248 ~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~Gvf 327 (401)
++.|++|+++++++|++|+||+|++|+++++ ++++++++.++||+|||++||||+|++.|+++|++|+|||||||||+|
T Consensus 241 i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~-~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~Gvf 319 (389)
T PRK00073 241 IDTAKELLEKAKEKGVKIPLPVDVVVAKEFS-DAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVF 319 (389)
T ss_pred HHHHHHHHHHHHhcCCEEECCCeeEEeeccC-CCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCCcc
Confidence 9999999999999999999999999999987 777778888999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 328 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 328 E~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
|+++|+.||+++++++++++ +|||||||||++|++++|+.++||||||||||+||||||++||||++|++
T Consensus 320 E~~~F~~GT~~l~~aia~~~---a~sivGGGdt~aa~~~~g~~~~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 389 (389)
T PRK00073 320 EFENFAKGTKAVAKAIAEST---AFSIIGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGKELPGVAALEE 389 (389)
T ss_pred ccccchHHHHHHHHHHHhcC---CeEEEcCCHHHHHHHHcCCCCCccEEcCCcHHHHHHHcCCCcchHHHhcC
Confidence 99999999999999999864 69999999999999999999999999999999999999999999999974
No 6
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=2.2e-144 Score=1099.54 Aligned_cols=394 Identities=55% Similarity=0.928 Sum_probs=375.7
Q ss_pred Cccccccccc--CCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhH
Q 040813 5 KSVSVLKEAD--LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPL 80 (401)
Q Consensus 5 ~~i~~l~d~d--~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g-~~~~~SL~~v 80 (401)
|.+++|+|+| ++|||||||||||||++ +|+|+||+||++++|||+||+++||| |||+||||||++ +++++||+||
T Consensus 3 ~~~~ti~d~~~~~~gK~VllRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~L~~~gak~vvl~SHlGRP~g~~~~~~SL~~v 81 (417)
T PTZ00005 3 SNKLGIDDVDDQLKGKRVLIRVDFNVPIK-EGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGRRVEKYSLKPV 81 (417)
T ss_pred cccCcHHHhhhccCCCEEEEEecCCCCCc-CCcCCChHhHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCcCcccCHHHH
Confidence 3466777778 99999999999999997 58999999999999999999999996 999999999987 6678999999
Q ss_pred HHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccC-----------CcH----HHHHHHhhcCCEE
Q 040813 81 VPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEK-----------NDP----EFAKKLASLADLY 145 (401)
Q Consensus 81 a~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~-----------~~~----~f~~~LA~l~Dvy 145 (401)
|++|+++|+++|+|++||+|+.++++|++|++|||+||||+|||++|+. |++ .|+++||+|||+|
T Consensus 82 a~~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~GeVlLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~Diy 161 (417)
T PTZ00005 82 VPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIY 161 (417)
T ss_pred HHHHHHHHCCCeEECCCCCCHHHHHHHHcCCCCCEEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEE
Confidence 9999999999999999999999999999999999999999999999984 444 4999999999999
Q ss_pred eecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchH
Q 040813 146 VNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGG 225 (401)
Q Consensus 146 VNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ 225 (401)
||||||+|||+|||++|||+ +++|||+||||||++|++++++|+||+++|+|||||||||++|+||+++||+|++||+
T Consensus 162 VNDAFg~aHR~haS~~gi~~--~~s~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ 239 (417)
T PTZ00005 162 VNDAFGTAHRAHSSMVGVDL--PVKVAGFLMKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGG 239 (417)
T ss_pred EecchhhhhhhcccccccCC--ccchhhHHHHHHHHHHHHHhcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcH
Confidence 99999999999999999997 3589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-cCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEE-eCCCCCCCCcccccChH
Q 040813 226 MIFTFYKA-QGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVV-PATAIPDGWMGLDVGPD 303 (401)
Q Consensus 226 ma~tFl~a-~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~-~~~~ip~~~~~~DIGp~ 303 (401)
||||||+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++++.++++.++ +..+||+|||++||||+
T Consensus 240 ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~ 319 (417)
T PTZ00005 240 MAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPK 319 (417)
T ss_pred HHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHH
Confidence 99999999 68999999999999999999999999999999999999999999877777666 56789999999999999
Q ss_pred HHHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhH
Q 040813 304 AIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGAS 383 (401)
Q Consensus 304 Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~ 383 (401)
|++.|+++|++|||||||||||+||+++|++||++|+++|++++++++|||+|||||++|++++|+.++||||||||||+
T Consensus 320 Ti~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia~~t~~~a~sivGGGdt~aAi~~~g~~~~~shvSTGGGA~ 399 (417)
T PTZ00005 320 SIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVVKATEKGAITIVGGGDTASLVEKTGAANKVSHVSTGGGAS 399 (417)
T ss_pred HHHHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCCceEcCchHHH
Confidence 99999999999999999999999999999999999999999977667999999999999999999999999999999999
Q ss_pred HHhhcCCCCchhhccccC
Q 040813 384 LELLEGKTLPGVLALDDA 401 (401)
Q Consensus 384 Le~LeG~~LPgv~aL~~~ 401 (401)
|+||||++||||+||+++
T Consensus 400 Le~LeGk~LPgv~aL~~~ 417 (417)
T PTZ00005 400 LELLEGKELPGVVALSNK 417 (417)
T ss_pred HHHHcCCCcchHHHhhcC
Confidence 999999999999999864
No 7
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.5e-141 Score=1127.29 Aligned_cols=391 Identities=68% Similarity=1.094 Sum_probs=379.5
Q ss_pred cccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhHHHHH
Q 040813 6 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRL 84 (401)
Q Consensus 6 ~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g-~~~~~SL~~va~~L 84 (401)
.+++|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||++ .++++||+|||++|
T Consensus 2 ~~~ti~d~d~~gK~VlvRvD~NvP~~~~g~i~dd~RI~~~lpTI~~l~~~gakvvl~SH~gRP~~~~~~~~SL~~va~~L 81 (645)
T PRK13962 2 NKKTIRDIDVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILVSHLGRPKGEFDPKFSMAPVAKRL 81 (645)
T ss_pred CCCchhhhccCCCEEEEEecCCCCcCCCCcCCCcHhHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCccCCHHHHHHHH
Confidence 45677788999999999999999997458999999999999999999999999999999999987 56789999999999
Q ss_pred HhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhh
Q 040813 85 SELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVA 164 (401)
Q Consensus 85 ~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~ 164 (401)
+++|+++|+|++||+|++++++|++|++|||+||||+|||+||++|++.|+++||+|||+|||||||||||+|||++|||
T Consensus 82 ~~~L~~~V~f~~d~~g~~~~~~i~~l~~GeilLLEN~Rf~~~E~~~d~~~~~~LA~l~DvyVNDAFg~aHR~haS~~gi~ 161 (645)
T PRK13962 82 SELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVRFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVA 161 (645)
T ss_pred HHHHCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCHHHHHHHHHHhCCEEEechhhhhhhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccc
Q 040813 165 KFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVE 244 (401)
Q Consensus 165 ~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e 244 (401)
+++ |+|||+|||||+++|++++++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+|++|
T Consensus 162 ~~l-p~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e 240 (645)
T PRK13962 162 EYL-PAVAGFLMEKEIEFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVE 240 (645)
T ss_pred hhh-hhhhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcC
Confidence 998 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCcc
Q 040813 245 EDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPM 324 (401)
Q Consensus 245 ~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~ 324 (401)
++.++.|++|+++++++|++|+||+|++|+++|+.++++.+++.++||+|||++||||+|++.|+++|++||||||||||
T Consensus 241 ~~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~ 320 (645)
T PRK13962 241 EDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPM 320 (645)
T ss_pred hhhHHHHHHHHHHHHhcCCEEECCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999988888888888999999999999999999999999999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 325 GVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 325 GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
||||+++|+.||++++++++++ ++|||+|||||++|++++|+.|+||||||||||+|||||||+||||++|++
T Consensus 321 GvfE~~~F~~GT~~l~~aia~~---~~~svvGGGdt~aa~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgv~aL~~ 393 (645)
T PRK13962 321 GVFEFDNFAEGTRAVAEAVAES---GAITIIGGGDSAAAVEKLGFADKMSHISTGGGASLEFLEGKVLPGIACLLD 393 (645)
T ss_pred ccccCCCchHHHHHHHHHHHhc---CCeEEECchHHHHHHHHcCCccCceEEcCChHHHHHHHcCCccHHHHHHhh
Confidence 9999999999999999999974 579999999999999999999999999999999999999999999999974
No 8
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-142 Score=1032.51 Aligned_cols=396 Identities=62% Similarity=0.989 Sum_probs=380.9
Q ss_pred CCCcccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhH
Q 040813 3 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPL 80 (401)
Q Consensus 3 ~~~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g-~~~~~SL~~v 80 (401)
...+..+|+++|++|||||+|||||||+++ ++|+|++||++++|||||++++|+| |||+||||||+| +++++||+|+
T Consensus 2 ~~~~klti~~~dl~GKrVf~RVDfNVPl~d-~~Itnn~RI~aalPtIky~l~~~~k~VvL~SHLGRP~G~~~~kySL~Pv 80 (416)
T KOG1367|consen 2 SLSSKLTIDNLDLKGKRVFIRVDFNVPLKD-NKITNNQRIVAALPTIKYLLSNGAKSVVLMSHLGRPKGVRNKKYSLAPV 80 (416)
T ss_pred CcccccccccccccCcEEEEEEeccccccC-CeecccceeeecccHHHHHHhCCCcEEEEhhhcCCCCCCCCccccccch
Confidence 345667778889999999999999999985 6999999999999999999999999 999999999999 6899999999
Q ss_pred HHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcH--------------HHHHHHhhcCCEEe
Q 040813 81 VPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDP--------------EFAKKLASLADLYV 146 (401)
Q Consensus 81 a~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~--------------~f~~~LA~l~DvyV 146 (401)
|.+|+++||++|.|.+||+|+++++++++..+|.|+||||+|||.|||.+.+ +|++.|++|+||||
T Consensus 81 a~eLk~lLg~~v~flddCvg~eVe~a~~~p~~G~viLLENlRfy~eEEg~~~~~~~~~~a~~~~v~~fr~~l~~l~DvyV 160 (416)
T KOG1367|consen 81 APELKSLLGKEVVFLDDCVGPEVEKAVASPAPGSVILLENLRFYVEEEGKGKDDSGKKVADPAKVKEFRASLASLGDVYV 160 (416)
T ss_pred HHHHHHHhCcceeeecccccHHHHHHhcCCCCCcEEEeecceeehhhhcCCccccccccCCHHHHHHHHHHHHhhccEEe
Confidence 9999999999999999999999999999999999999999999999987643 89999999999999
Q ss_pred ecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHH
Q 040813 147 NDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGM 226 (401)
Q Consensus 147 NDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~m 226 (401)
|||||||||+|+||+|+.. +.+++||||+|||+|+.+++++|.|||+||+||+||+|||++|+||++|||.+||||+|
T Consensus 161 nDAFGtaHRahsSm~g~~~--~~~~aGfLl~KEL~yf~kalenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGM 238 (416)
T KOG1367|consen 161 NDAFGTAHRAHSSMVGVGL--PQSAAGFLLQKELDYFAKALENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGM 238 (416)
T ss_pred ecccccchhccccccccCC--chhhhhHHHHHHHHHHHHHHcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCce
Confidence 9999999999999999985 45899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCC-CCCCCCcccccChHH
Q 040813 227 IFTFYKAQ-GHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDA 304 (401)
Q Consensus 227 a~tFl~a~-G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~-~ip~~~~~~DIGp~T 304 (401)
|||||+++ |++||+|++|++..+.+++|+++|+++|++|+||+||++++.|+++++...++.. .||+|||+|||||+|
T Consensus 239 aftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes 318 (416)
T KOG1367|consen 239 AFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRILLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPES 318 (416)
T ss_pred eehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEEEeeeeeeeeccccCccccceeccccCCCCCccccccChHH
Confidence 99999996 6999999999999999999999999999999999999999999999887777654 799999999999999
Q ss_pred HHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHH
Q 040813 305 IKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASL 384 (401)
Q Consensus 305 i~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~L 384 (401)
++.|++.+.+|||||||||+||||++.|++||+++++++.+++.+|++||+|||||++|++++|.+|++|||||||||+|
T Consensus 319 ~k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v~~t~~G~~tiiGGGDTata~~k~g~~dk~ShVSTGGGasL 398 (416)
T KOG1367|consen 319 IKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALVKLTGKGVTTIIGGGDTATACKKFGTEDKVSHVSTGGGASL 398 (416)
T ss_pred HHHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHHHHhcCCcEEEEcCCcHHHHHHHhCcccceeeeecCCceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCchhhccccC
Q 040813 385 ELLEGKTLPGVLALDDA 401 (401)
Q Consensus 385 e~LeG~~LPgv~aL~~~ 401 (401)
|+||||.||||.+|+++
T Consensus 399 eLLeGK~LPGv~aLs~~ 415 (416)
T KOG1367|consen 399 ELLEGKVLPGVDALSEA 415 (416)
T ss_pred hhhcCCcCcchhhhccC
Confidence 99999999999999863
No 9
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=3.2e-141 Score=1070.09 Aligned_cols=378 Identities=62% Similarity=1.019 Sum_probs=344.9
Q ss_pred ccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC--CCCCCChhhHHHHHHh
Q 040813 9 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSE 86 (401)
Q Consensus 9 ~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g--~~~~~SL~~va~~L~~ 86 (401)
||+|+|++|||||||||||||++ +|+|+|++||++++|||+||+++||||||+||||||++ +++++||+|||++|++
T Consensus 1 Ti~d~d~~gK~VlvRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~ 79 (384)
T PF00162_consen 1 TIDDLDLKGKRVLVRVDFNVPIK-NGKITDDTRIRAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSK 79 (384)
T ss_dssp BGGGS--TTEEEEEEE-----EE-TTEES-THHHHHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHH
T ss_pred CccccCcCCCEEEEEeCCCCCcC-CCcCCCcchHHHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHH
Confidence 57888999999999999999995 68999999999999999999999999999999999984 7789999999999999
Q ss_pred hhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCcccc----CCcHHHHHHHhhcCCEEeecccccccccccchhh
Q 040813 87 LLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE----KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEG 162 (401)
Q Consensus 87 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~----~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vg 162 (401)
+|+++|+|++||+|++++++|++|++|||+||||+|||+||+ +|++.|+++||++||+|||||||+|||+|||++|
T Consensus 80 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLENlRf~~eE~~~~~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vg 159 (384)
T PF00162_consen 80 LLGKPVKFVDDCIGEEAEEAIESLKPGEILLLENLRFYPEEEGKKEKNDTEFARKLASLADVYVNDAFGTAHRAHASTVG 159 (384)
T ss_dssp HHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESSGGGSTTTTSEEHHTHHHHHHHHHTT-SEEEEESGGGTTS--TTTTT
T ss_pred HhCCCeeeccccCCHHHHHHHhccCCCCEEEEeeeccccccccccccccHHHHHHHHHhCCEEEEcCccchhcCCCCccc
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcc
Q 040813 163 VAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSL 242 (401)
Q Consensus 163 i~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl 242 (401)
||++++|+|||+|||||+++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|+
T Consensus 160 i~~~l~ps~aG~lmekEl~~L~~~~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~ 239 (384)
T PF00162_consen 160 IPKFLKPSAAGFLMEKELEALSKVLENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSL 239 (384)
T ss_dssp GGGTSSEEEE-HHHHHHHHHHHHHHHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSS
T ss_pred chhccchhhHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeC
Q 040813 243 VEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNG 322 (401)
Q Consensus 243 ~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNG 322 (401)
+|++.++.|++|+++++++|++|+||+||+|+++++.+++.++++.++||++||++||||+|++.|+++|++|+||||||
T Consensus 240 ~e~~~i~~a~~ll~~~~~~g~~i~lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktv~wNG 319 (384)
T PF00162_consen 240 VEEDLIEEAKELLEKAKDRGVKIVLPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAKTVFWNG 319 (384)
T ss_dssp CHGGGHHHHHHHHHHHHHTT-EEE--SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-SEEEEES
T ss_pred hhhhhHHHHHHHHHHHHhcCceEEEEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCCeEEEEC
Confidence 99999999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCC
Q 040813 323 PMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGK 390 (401)
Q Consensus 323 P~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~ 390 (401)
|||+||+++|++||++++++++++ ++|||+|||||++|++++|+.++||||||||||+|+|||||
T Consensus 320 P~GvfE~~~F~~GT~~l~~aia~~---~a~sivGGGdt~~a~~~~g~~~~~shvSTGGGA~L~~LeGk 384 (384)
T PF00162_consen 320 PMGVFEIENFAEGTRALAKAIAKS---GAFSIVGGGDTAAAIKKFGLADKFSHVSTGGGAFLEFLEGK 384 (384)
T ss_dssp -SS-TTSGGGCHHHHHHHHHHHHH---TSEEEEESHHHHHHHHHTTGGGGSSEEESSSHHHHHHHTTS
T ss_pred CcccCchhhhhHHHHHHHHHHHhc---CCeEEEcccHHHHHHHhcCcccceeEEecCcHHHHHHhcCC
Confidence 999999999999999999999998 57999999999999999999999999999999999999997
No 10
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=83.13 E-value=46 Score=36.21 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCC-CCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEec
Q 040813 42 VRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120 (401)
Q Consensus 42 I~~~lpTI~~L~~~gakvvl~SHlGRP~-g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN 120 (401)
...+.++|+.|.++|.+++|+|.|+... |+...-.+...++.+-+.+|.++... +++. +
T Consensus 199 ~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdvi---ia~~-----------------~ 258 (526)
T TIGR01663 199 FPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVF---IAIG-----------------A 258 (526)
T ss_pred ccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEE---EeCC-----------------C
Confidence 3578889999999999999999998863 33222233333555555567664422 2211 0
Q ss_pred ccCCccccCCcHHHHHHHhhcC----------CEEeecc----------------cccccccccchhhhhcccCcc-ccc
Q 040813 121 VRFHKEEEKNDPEFAKKLASLA----------DLYVNDA----------------FGSAHRAHASTEGVAKFLKPS-VAG 173 (401)
Q Consensus 121 ~Rf~~eE~~~~~~f~~~LA~l~----------DvyVNDA----------------Fg~aHR~haS~vgi~~~l~~~-~aG 173 (401)
. .-.+.++.+-..+.... =+||-|| |+++-|.-|-.+|+.=|-|-. +.|
T Consensus 259 ~----~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~~~~D~s~~D~~FA~n~gi~F~tPee~Fl~ 334 (526)
T TIGR01663 259 G----FYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGKKKKDFSCADRLFAANLGIPFATPEEFFLG 334 (526)
T ss_pred C----CCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCCCcCCCChhhHHHHHHcCCcccChHHHhCC
Confidence 0 00133333333322211 2477776 334445556666664332111 111
Q ss_pred hh---HH------HHHHHHHh------hhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEc----hHHHHHH-HHH
Q 040813 174 FL---MQ------KELDYLVG------AVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLG----GGMIFTF-YKA 233 (401)
Q Consensus 174 ~l---me------kEl~~L~~------~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliG----G~ma~tF-l~a 233 (401)
.- .. +.+..... ....+.+|.+.|+.|..=|=|=-..+.++......++- |.-.... ...
T Consensus 335 ~~~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~~~~~~~~a~ 414 (526)
T TIGR01663 335 KPAAGFEKPAFDPRSVQDQGPLCDPDDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGSTQNCLTACE 414 (526)
T ss_pred CCcccccccCCCchhhcccccccCCcccccCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHHHHHHHHHHH
Confidence 11 00 00100000 11245789999999999999999999988754333330 2111111 111
Q ss_pred cCCccCCcc-cccCc--hHHHHHHHHHHhhCCCeEE
Q 040813 234 QGHSVGSSL-VEEDK--LDLATSLMEKAKSKGVSLL 266 (401)
Q Consensus 234 ~G~~iG~sl-~e~~~--~~~a~~il~~a~~~~~~I~ 266 (401)
+-..-|+|. ++.-. .+.-+++++.|+++|+.+.
T Consensus 415 ~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~ 450 (526)
T TIGR01663 415 RALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCR 450 (526)
T ss_pred HHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 234445554 44433 3455677888888887654
No 11
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.19 E-value=8.2 Score=39.16 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCcee
Q 040813 45 AVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVK 93 (401)
Q Consensus 45 ~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~ 93 (401)
+.|+++.|+++|.. |-+++|-.||.|...++...|+...-.+ +|.||.
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~-~~ipv~ 61 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALE-LGIPVF 61 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHH-cCCcee
Confidence 67899999999977 7789999999987667777788654444 466644
No 12
>PRK05826 pyruvate kinase; Provisional
Probab=74.48 E-value=22 Score=38.04 Aligned_cols=305 Identities=16% Similarity=0.214 Sum_probs=146.7
Q ss_pred HHHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHH-----HhcCCCCcEEE
Q 040813 45 AVPTIKYLMGHGAKVI--LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM-----VAEIPEGGVLL 117 (401)
Q Consensus 45 ~lpTI~~L~~~gakvv--l~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~-----i~~l~~G~vlL 117 (401)
+..+|+.|++.|..+. =+||-.. +....+-...+.+++.+|++|...-|.-||+.+-- --.|+.||.+-
T Consensus 18 ~~e~l~~li~~G~~v~RiN~sHg~~----~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~~i~l~~G~~v~ 93 (465)
T PRK05826 18 SPENLEKLIEAGVNVVRLNFSHGSH----EEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKEGKITLKTGDKFT 93 (465)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccCCcEEecCCCEEE
Confidence 3467888888887643 3456431 12223333445566667778887777777765311 12356677666
Q ss_pred EecccCCcccc----CCcHHHHHHHhhcCCEEeecccccccc-------ccc---------chhhhhcccCcc--ccchh
Q 040813 118 LENVRFHKEEE----KNDPEFAKKLASLADLYVNDAFGSAHR-------AHA---------STEGVAKFLKPS--VAGFL 175 (401)
Q Consensus 118 LEN~Rf~~eE~----~~~~~f~~~LA~l~DvyVNDAFg~aHR-------~ha---------S~vgi~~~l~~~--~aG~l 175 (401)
|-+-+-..+++ -+-++|.+.+.+.-.||++|.-=...= -.+ |--|+. +|.. -.-.|
T Consensus 94 l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn--lp~~~~~lp~l 171 (465)
T PRK05826 94 LDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN--IPGGGLSLPAL 171 (465)
T ss_pred EEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee--ccCcccCCCCC
Confidence 54332111111 134567888888888888884222210 000 000110 0000 00011
Q ss_pred HHH-------------------------HHHHHHhhhcCCCCCeEEEecCCccccHHHH--HHHHHHhcCeEEEchHHHH
Q 040813 176 MQK-------------------------ELDYLVGAVSNPKKPFAAIVGGSKVSTKIGV--IESLLEKVDILLLGGGMIF 228 (401)
Q Consensus 176 mek-------------------------El~~L~~~~~~p~rP~vaIlGGaKvsdKi~~--i~~Ll~kvD~lliGG~ma~ 228 (401)
=|+ +++.+.+.+..-..+.+.|+ +|+.++-.+ |+.++..+|.|++|=+
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~ii--akIEt~eav~nldeI~~~~DgImIgrg--- 246 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKII--AKIERAEAVDNIDEIIEASDGIMVARG--- 246 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEE--EEEcCHHHHHhHHHHHHHcCEEEECcc---
Confidence 133 34444444432221111121 688777644 4455667999998632
Q ss_pred HHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccc--CCCCeeEE-eC-CCCCCCCc--ccc---
Q 040813 229 TFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFA--ADANSKVV-PA-TAIPDGWM--GLD--- 299 (401)
Q Consensus 229 tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~--~~~~~~~~-~~-~~ip~~~~--~~D--- 299 (401)
-.|.++| .++.-..-+++++.|++.|..++.-.... +... +...|.++ ++ +.+-+|.- .|-
T Consensus 247 ----DLg~elg----~~~v~~~qk~Ii~~c~~~gKpvi~ATqmL--eSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ET 316 (465)
T PRK05826 247 ----DLGVEIP----DEEVPGLQKKIIRKAREAGKPVITATQML--ESMIENPRPTRAEVSDVANAVLDGTDAVMLSGET 316 (465)
T ss_pred ----hhhhhcC----cHhHHHHHHHHHHHHHHcCCCEEEECHHH--HHHhhCCCCchhhhhhHHHHHHcCCcEEEecccc
Confidence 2345555 34556677899999999988655433222 1111 11112221 11 11212210 000
Q ss_pred -cCh---HHHHHHHHHhccCCeEEEeCcccc-cCcccchHHHHHHHHHHHHhhC-CC-c--EEEE-ecchHHHHHHHcCC
Q 040813 300 -VGP---DAIKSFSEALDTTKTIIWNGPMGV-FEFDKFAAGTEAIAKKLAELSG-KG-V--TTII-GGGDSVAAVEKVGL 369 (401)
Q Consensus 300 -IGp---~Ti~~~~~~i~~aktI~wNGP~Gv-fE~~~F~~GT~~i~~aia~~~~-~~-a--~siv-GGGdt~~a~~~~g~ 369 (401)
+|. ++++..++++.+|...+|. ..-. ...+.+...+.+++.+..+... -+ + ..+. -.|-|+..+.++-.
T Consensus 317 A~G~yPveaV~~m~~I~~~aE~~~~~-~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP 395 (465)
T PRK05826 317 AAGKYPVEAVEAMARICKGAEKEFSI-NLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRP 395 (465)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhccch-hhhhhhccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCC
Confidence 332 6677778888877765543 1000 0111223456667766655321 13 2 2222 36677777777644
Q ss_pred CC
Q 040813 370 AD 371 (401)
Q Consensus 370 ~d 371 (401)
.-
T Consensus 396 ~~ 397 (465)
T PRK05826 396 GA 397 (465)
T ss_pred CC
Confidence 33
No 13
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=73.85 E-value=8 Score=38.48 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCC
Q 040813 17 GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGR 67 (401)
Q Consensus 17 gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGR 67 (401)
-||++|.+=-++=.+++|.-.|..+|......|..|.++|.+|||+||=.-
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv 58 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAV 58 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcH
Confidence 389999998888666555578999999999999999999999999999443
No 14
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=73.09 E-value=97 Score=30.29 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=89.5
Q ss_pred EEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCC
Q 040813 19 RVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDC 98 (401)
Q Consensus 19 ~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~ 98 (401)
+|++|+|-+.-+. -| -|.+++-=-+.|.++|..|+.+...... ...+.+++ -|.+|...++.
T Consensus 1 ~i~ir~Da~~~iG-~G------Hv~Rcl~LA~~l~~~g~~v~f~~~~~~~----------~~~~~i~~-~g~~v~~~~~~ 62 (279)
T TIGR03590 1 KILFRADASSEIG-LG------HVMRCLTLARALHAQGAEVAFACKPLPG----------DLIDLLLS-AGFPVYELPDE 62 (279)
T ss_pred CEEEEecCCcccc-cc------HHHHHHHHHHHHHHCCCEEEEEeCCCCH----------HHHHHHHH-cCCeEEEecCC
Confidence 5899999987664 23 5778887777888899998887654211 11233433 24555544433
Q ss_pred CC--HH---HHHHHhcCCCCcEEEEecccCCccccCCc----------HHHHHHHhhcCCEEeecccccccccccchhhh
Q 040813 99 IG--EE---VEKMVAEIPEGGVLLLENVRFHKEEEKND----------PEFAKKLASLADLYVNDAFGSAHRAHASTEGV 163 (401)
Q Consensus 99 ~g--~~---~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~----------~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi 163 (401)
-+ ++ ..+.+++. .-|++++++-++..+..+.- ..|.. -.-.+|+++|-.++...-.+... +
T Consensus 63 ~~~~~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~-~~~~~D~vin~~~~~~~~~y~~~--~ 138 (279)
T TIGR03590 63 SSRYDDALELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD-RPHDCDLLLDQNLGADASDYQGL--V 138 (279)
T ss_pred CchhhhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC-CCcCCCEEEeCCCCcCHhHhccc--C
Confidence 21 12 23333333 33677777776654332100 00110 01167888777665211111110 2
Q ss_pred hcccCccccch---hHHHHHHHHHhhhc-CC-CCCeEEEecCCcccc-HHHHHHHHHH
Q 040813 164 AKFLKPSVAGF---LMQKELDYLVGAVS-NP-KKPFAAIVGGSKVST-KIGVIESLLE 215 (401)
Q Consensus 164 ~~~l~~~~aG~---lmekEl~~L~~~~~-~p-~rP~vaIlGGaKvsd-Ki~~i~~Ll~ 215 (401)
+... .-+.|. ++.+|.....+... .+ .+..+..+||+-... ...+++.|.+
T Consensus 139 ~~~~-~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~ 195 (279)
T TIGR03590 139 PANC-RLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAE 195 (279)
T ss_pred cCCC-eEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhc
Confidence 2111 136677 88998876654221 21 234566677776654 2355555543
No 15
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=72.03 E-value=20 Score=35.83 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 040813 44 AAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVR 122 (401)
Q Consensus 44 ~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~R 122 (401)
-++|+++.|++++.. +.+++|-.+|.+...++...|+.++.. ..|.||.-..+.-.++..+.++++++-=+++.-.-+
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~-~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 89 (309)
T PRK00005 11 FAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLAL-EHGIPVLQPEKLRDPEFLAELAALNADVIVVVAYGQ 89 (309)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHH-HcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehhhc
Confidence 468999999998888 558888888866433444446655444 457887544443344555666666554444444444
Q ss_pred CCc
Q 040813 123 FHK 125 (401)
Q Consensus 123 f~~ 125 (401)
+.+
T Consensus 90 iip 92 (309)
T PRK00005 90 ILP 92 (309)
T ss_pred ccC
Confidence 444
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=67.81 E-value=28 Score=35.01 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCC
Q 040813 44 AAVPTIKYLMGHGAKV-ILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPE 112 (401)
Q Consensus 44 ~~lpTI~~L~~~gakv-vl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~ 112 (401)
-++|+++.|+++|..| .++++-.+|.+...++.-.|+.++..+ .|.||.-....-.++..+.++++++
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~-~~Ipv~~~~~~~~~~~~~~l~~~~~ 79 (313)
T TIGR00460 11 FSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEE-KGIPVFQPEKQRQLEELPLVRELKP 79 (313)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHH-cCCCEEecCCCCcHHHHHHHHhhCC
Confidence 3689999999998884 578888888765444555566665555 4888865544433444555666555
No 17
>PRK06988 putative formyltransferase; Provisional
Probab=67.53 E-value=25 Score=35.39 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCC
Q 040813 44 AAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPE 112 (401)
Q Consensus 44 ~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~ 112 (401)
-++|+++.|+++|.. +.+++|-.||.+ +....|+.++..+ .|.|+....+.-.++..+.+++.++
T Consensus 13 ~a~~~L~~L~~~~~~i~~Vvt~~d~~~~---~~~~~~v~~~A~~-~gip~~~~~~~~~~~~~~~l~~~~~ 78 (312)
T PRK06988 13 VGVRCLQVLLARGVDVALVVTHEDNPTE---NIWFGSVAAVAAE-HGIPVITPADPNDPELRAAVAAAAP 78 (312)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCcc---CcCCCHHHHHHHH-cCCcEEccccCCCHHHHHHHHhcCC
Confidence 478999999999987 667888888854 2333466544444 4888765444444444444554433
No 18
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=67.40 E-value=21 Score=29.75 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCC--CHHHHHHHhc-CCCCcE
Q 040813 39 DNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCI--GEEVEKMVAE-IPEGGV 115 (401)
Q Consensus 39 ~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~--g~~~~~~i~~-l~~G~v 115 (401)
++-|-.+..+|++|.++|.+++++|-- ...|-+.++++|++ +|.++.. ++++ +..+.+.++. .....|
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNn-------s~~s~~~~~~~L~~-~Gi~~~~-~~i~ts~~~~~~~l~~~~~~~~v 83 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNN-------SSRSREEYAKKLKK-LGIPVDE-DEIITSGMAAAEYLKEHKGGKKV 83 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES--------SSS-HHHHHHHHHH-TTTT--G-GGEEEHHHHHHHHHHHHTTSSEE
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCC-------CCCCHHHHHHHHHh-cCcCCCc-CEEEChHHHHHHHHHhcCCCCEE
Confidence 555677899999999999999999854 34577888999944 7888764 5555 3344555555 344455
Q ss_pred EEE
Q 040813 116 LLL 118 (401)
Q Consensus 116 lLL 118 (401)
+++
T Consensus 84 ~vl 86 (101)
T PF13344_consen 84 YVL 86 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 19
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.59 E-value=20 Score=37.91 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHhhhcCCCCCeEEEecCC-ccccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 182 YLVGAVSNPKKPFAAIVGGS-KVSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 182 ~L~~~~~~p~rP~vaIlGGa-KvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
...++++..+++.++|+||- |-.|.-.+.+.+.+++|.+++.|--+..+...
T Consensus 378 s~~~al~~~~~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~ 430 (498)
T PRK02006 378 ATVAALDGLAQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAA 430 (498)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHH
Confidence 33344444457889999996 55566667777777899999999777666543
No 20
>PRK04302 triosephosphate isomerase; Provisional
Probab=65.94 E-value=81 Score=29.83 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCcee
Q 040813 48 TIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVK 93 (401)
Q Consensus 48 TI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~ 93 (401)
+++.|.+.|+.-||++|--|... .-.++...++..+ +|..+-
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~---~~e~~~~v~~a~~-~Gl~~I 118 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLT---LADIEAVVERAKK-LGLESV 118 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccC---HHHHHHHHHHHHH-CCCeEE
Confidence 58888889999999999776532 2225556555555 365433
No 21
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=62.47 E-value=45 Score=28.41 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=49.4
Q ss_pred ccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchh--hHHHhh---
Q 040813 313 DTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGG--ASLELL--- 387 (401)
Q Consensus 313 ~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGG--A~Le~L--- 387 (401)
.+.+.|.+... +. .+. .+.++++.+.+.. ..+.+|+||.+....-+..-....++||..|-| ++.+++
T Consensus 38 ~~pdiv~~S~~---~~--~~~-~~~~~~~~ik~~~-p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 38 LKPDVVGISLM---TS--AIY-EALELAKIAKEVL-PNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred cCCCEEEEeec---cc--cHH-HHHHHHHHHHHHC-CCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 58899988853 22 233 7888888887753 357888888887765555323456899999888 444444
Q ss_pred -cCCCC
Q 040813 388 -EGKTL 392 (401)
Q Consensus 388 -eG~~L 392 (401)
+|+.+
T Consensus 111 ~~g~~~ 116 (127)
T cd02068 111 EEGEDL 116 (127)
T ss_pred HcCCCc
Confidence 45555
No 22
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=62.14 E-value=60 Score=32.49 Aligned_cols=150 Identities=22% Similarity=0.246 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecc
Q 040813 42 VRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENV 121 (401)
Q Consensus 42 I~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~ 121 (401)
-.+.++.|...+.+|-+|+++|+.|-|.=+++.. .+++++.+. |.+|..++-.-.-.+.-+...+. . +..
T Consensus 70 ~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~---~Lv~~~~~~-gi~v~vIPGiSA~~aA~a~sG~~-~-----~~f 139 (287)
T PRK14994 70 EQQKAETLLAKLQEGQNIALVSDAGTPLINDPGY---HLVRTCREA-GIRVVPLPGPCAAITALSAAGLP-S-----DRF 139 (287)
T ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHH---HHHHHHHHC-CCCEEEeCCHHHHHHHHHHcCCC-C-----Ccc
Confidence 4566778888888999999999999995343433 445555554 88888877653322222233333 2 333
Q ss_pred c---CCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcccCc---cccchhH----HH----HHHHHHhhh
Q 040813 122 R---FHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKP---SVAGFLM----QK----ELDYLVGAV 187 (401)
Q Consensus 122 R---f~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l~~---~~aG~lm----ek----El~~L~~~~ 187 (401)
. |.+.........-++|+...+-.| -|=+.||-...+..+-+.+.+ .+.++-+ |. -+..+...+
T Consensus 140 ~f~Gflp~~~~~r~~~L~~l~~~~~t~V--~yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~ 217 (287)
T PRK14994 140 CYEGFLPAKSKGRRDALKALEAEPRTLI--FYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWV 217 (287)
T ss_pred eEeEECCCCCchHHHHHHHHhcCCCeEE--EEEEChhHHHHHHHHHHhcCCCCeEEEEeeccCCCCcEEeeEHHHHHHHH
Confidence 3 334332222333444445556444 233457776666555443321 1222211 10 122222222
Q ss_pred ----cCCCCCeEEEecCCcc
Q 040813 188 ----SNPKKPFAAIVGGSKV 203 (401)
Q Consensus 188 ----~~p~rP~vaIlGGaKv 203 (401)
..++..||.|++|.+.
T Consensus 218 ~~~~~~~kGE~vivi~~~~~ 237 (287)
T PRK14994 218 KEDENRRKGEMVLIVEGHKA 237 (287)
T ss_pred HhcCCCCCceEEEEEeCCcc
Confidence 2458999999999754
No 23
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.10 E-value=32 Score=35.59 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHhhhcCCCCCeEEEecC-CccccHHHHHHHHHHhcCeEEEchHHHHHH
Q 040813 182 YLVGAVSNPKKPFAAIVGG-SKVSTKIGVIESLLEKVDILLLGGGMIFTF 230 (401)
Q Consensus 182 ~L~~~~~~p~rP~vaIlGG-aKvsdKi~~i~~Ll~kvD~lliGG~ma~tF 230 (401)
.+..+++.+.+|.++|+|| .|--|--.+++.+.+.+|.+++-|--+..+
T Consensus 303 s~~~al~~~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G~~~~~i 352 (418)
T PRK00683 303 AVEKALLAVGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEI 352 (418)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEECCCHHHH
Confidence 4555555556788999997 566666577777777789998888654433
No 24
>PRK06801 hypothetical protein; Provisional
Probab=57.18 E-value=2.1e+02 Score=28.64 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=51.7
Q ss_pred hcCCEEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHH-hcC
Q 040813 140 SLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLE-KVD 218 (401)
Q Consensus 140 ~l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~-kvD 218 (401)
.-+|+.-- +||++|..+.. -|+ .++-.-+|+.. . ..-| +++.||+.++|-- +..+++ -++
T Consensus 168 tgvD~LAv-aiGt~Hg~y~~---~~~------l~~e~l~~i~~---~---~~~P-LVlHGGSgi~~e~--~~~~i~~Gi~ 228 (286)
T PRK06801 168 TGIDALAV-AIGNAHGKYKG---EPK------LDFARLAAIHQ---Q---TGLP-LVLHGGSGISDAD--FRRAIELGIH 228 (286)
T ss_pred HCcCEEEe-ccCCCCCCCCC---CCC------CCHHHHHHHHH---h---cCCC-EEEECCCCCCHHH--HHHHHHcCCc
Confidence 46787777 99999977753 222 23333344433 2 2467 6889999999732 455555 499
Q ss_pred eEEEchHHHHHHHHHc
Q 040813 219 ILLLGGGMIFTFYKAQ 234 (401)
Q Consensus 219 ~lliGG~ma~tFl~a~ 234 (401)
+|=++-.+-..|..+.
T Consensus 229 KINv~T~~~~a~~~~~ 244 (286)
T PRK06801 229 KINFYTGMSQAALAAV 244 (286)
T ss_pred EEEehhHHHHHHHHHH
Confidence 9999999999988764
No 25
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=54.18 E-value=56 Score=36.02 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 040813 44 AAVPTIKYLMGHGAKVI-LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVR 122 (401)
Q Consensus 44 ~~lpTI~~L~~~gakvv-l~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~R 122 (401)
-++|+++.|+++|..|+ +++|-.||.+. ....|+.+ +.+..|.||.-..+.-.++..+.++++++-=+++.---+
T Consensus 11 ~a~~~l~~L~~~~~~i~~V~t~pd~~~~~---~~~~~v~~-~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~ 86 (660)
T PRK08125 11 IGCVGIEALLAAGYEIAAVFTHTDNPGEN---HFFGSVAR-LAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYYRN 86 (660)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCCCcCC---CCcCHHHH-HHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEccccc
Confidence 36899999999998876 89998888652 22235544 445568998766665566777778887666555555556
Q ss_pred CCccc
Q 040813 123 FHKEE 127 (401)
Q Consensus 123 f~~eE 127 (401)
+.++|
T Consensus 87 ii~~~ 91 (660)
T PRK08125 87 LLSDE 91 (660)
T ss_pred cCCHH
Confidence 66555
No 26
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.86 E-value=66 Score=33.40 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCCeEEEecC-CccccHHHHHHHHHHhcCeEEEchHHHHHHHH
Q 040813 191 KKPFAAIVGG-SKVSTKIGVIESLLEKVDILLLGGGMIFTFYK 232 (401)
Q Consensus 191 ~rP~vaIlGG-aKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~ 232 (401)
++|.++|+|| .|-.|.-.+++.+.+.+|.+++-|..+..+..
T Consensus 348 ~~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~~~~l~~ 390 (459)
T PRK02705 348 PGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQ 390 (459)
T ss_pred CCCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCCHHHHHH
Confidence 3578999998 66778888888777789999888877766544
No 27
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=51.51 E-value=28 Score=31.46 Aligned_cols=51 Identities=12% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhh---hCCceee
Q 040813 44 AAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSEL---LGVEVKM 94 (401)
Q Consensus 44 ~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~---L~~~V~f 94 (401)
.+.+.|++|.++|.+|||+|.|+--...-...+++.+-+++..+ |+.|+.+
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~ 86 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQV 86 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEE
T ss_pred hHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEE
Confidence 48889999999999999999997543211344565555555544 4666553
No 28
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=50.66 E-value=23 Score=35.96 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=38.1
Q ss_pred ChhhHHHHHHhhhC-----CceeeccCCCCHHHHHHHhcC---CCC-cEEEEecccCCccccCCcHHHHHHHhh
Q 040813 76 SLKPLVPRLSELLG-----VEVKMANDCIGEEVEKMVAEI---PEG-GVLLLENVRFHKEEEKNDPEFAKKLAS 140 (401)
Q Consensus 76 SL~~va~~L~~~L~-----~~V~f~~d~~g~~~~~~i~~l---~~G-~vlLLEN~Rf~~eE~~~~~~f~~~LA~ 140 (401)
|++...++..+.+. ++|..--+. =+++.++++.+ +.| |++||+|.|+-++|-..+++-.++..+
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~ 257 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVE 257 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHH
Confidence 66677777777432 233332222 23455555411 144 999999999999998777664444333
No 29
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=50.61 E-value=43 Score=33.31 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=55.5
Q ss_pred ccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCC-CHHHHHHHhcCCC-C
Q 040813 36 ITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPE-G 113 (401)
Q Consensus 36 I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~-g~~~~~~i~~l~~-G 113 (401)
+.+.+.|-.+..+|+.|.++|-+++++|--+++ |=+.++++|+++.+.++..-.-+. |..+...++...+ +
T Consensus 20 ~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~-------s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~ 92 (269)
T COG0647 20 YRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTR-------SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGK 92 (269)
T ss_pred EeCCccCchHHHHHHHHHHcCCeEEEEeCCCCC-------CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCC
Confidence 455788899999999999999999999966543 556789999999888887544443 4445555665444 4
Q ss_pred cEEEE
Q 040813 114 GVLLL 118 (401)
Q Consensus 114 ~vlLL 118 (401)
.|.++
T Consensus 93 kv~vi 97 (269)
T COG0647 93 KVYVI 97 (269)
T ss_pred EEEEE
Confidence 55554
No 30
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=49.62 E-value=66 Score=33.91 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHH-cCCCCCceEEecchh-
Q 040813 304 AIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEK-VGLADKMSHISTGGG- 381 (401)
Q Consensus 304 Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~-~g~~d~~shvSTGGG- 381 (401)
|.+.+.+...+++-|.++.= . .-.....++++.+-+. ..++.+|+||.|....-+. +.....+++|..|=|
T Consensus 58 ~~~~~~~~~~~~Dlv~is~~-----t-~~~~~~~~ia~~iK~~-~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE 130 (472)
T TIGR03471 58 TIDDTLAIAKDYDLVVLHTS-----T-PSFPSDVKTAEALKEQ-NPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD 130 (472)
T ss_pred CHHHHHHHhcCCCEEEEECC-----C-cchHHHHHHHHHHHHh-CCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH
Confidence 34455556778899888742 1 2234577788877654 2467899999996544332 222246889999887
Q ss_pred -hHHHhhcCCCCchh
Q 040813 382 -ASLELLEGKTLPGV 395 (401)
Q Consensus 382 -A~Le~LeG~~LPgv 395 (401)
++.++++|+.++.|
T Consensus 131 ~~l~~l~~g~~~~~i 145 (472)
T TIGR03471 131 YTIKEVAEGKPLAEI 145 (472)
T ss_pred HHHHHHHcCCChhcC
Confidence 67788888765443
No 31
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=48.88 E-value=88 Score=33.07 Aligned_cols=199 Identities=22% Similarity=0.257 Sum_probs=104.9
Q ss_pred EecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcccCccccchhHHHH-----HHHHHhhhcCCCC
Q 040813 118 LENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKE-----LDYLVGAVSNPKK 192 (401)
Q Consensus 118 LEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekE-----l~~L~~~~~~p~r 192 (401)
-=|++=|++-..|-.-|...|.+---|--.|--.--|-.|.|-+.+.-.+- ...-.=+.+| .+.+.+.. ...|
T Consensus 89 ~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~-~~v~Y~vd~et~~IDyD~~~k~a-~e~k 166 (413)
T COG0112 89 YANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLF-NVVSYGVDPETGLIDYDEVEKLA-KEVK 166 (413)
T ss_pred ccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeE-EeEecccccccCccCHHHHHHHH-HHhC
Confidence 347777777666666665555555455567777778999986666553221 1111222222 33444422 2478
Q ss_pred CeEEEecCCccccHHH--HHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccce
Q 040813 193 PFAAIVGGSKVSTKIG--VIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTD 270 (401)
Q Consensus 193 P~vaIlGGaKvsdKi~--~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D 270 (401)
|.+.|.|++-.+-.+. -++.+.+.|...+.-= ...+-.|+. +..+.-.+-. -|
T Consensus 167 PK~ii~G~SaY~r~id~~~~reIad~VGA~L~~D-----------------------mAHiaGLVA-~G~~p~P~~~-Ad 221 (413)
T COG0112 167 PKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVD-----------------------MAHVAGLIA-GGVHPNPLPH-AD 221 (413)
T ss_pred CCEEEECccccccccCHHHHHHHHHHhCceEEeh-----------------------HHHHHHHHh-cccCCCCCCc-cc
Confidence 9999999998887774 3455555554444311 112222221 1122222222 34
Q ss_pred EEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEe---Ccc--------------cccCcccch
Q 040813 271 VVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWN---GPM--------------GVFEFDKFA 333 (401)
Q Consensus 271 ~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wN---GP~--------------GvfE~~~F~ 333 (401)
+|.+... ++.. =|-|.+||-=. +++.+.|. ++|||- ||. --+|++.|+
T Consensus 222 vVTtTTH------KTlr---GPrGG~Il~~~----eel~kkin--~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya 286 (413)
T COG0112 222 VVTTTTH------KTLR---GPRGGIILTND----EELAKKIN--SAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYA 286 (413)
T ss_pred eEeCCcc------cCCC---CCCceEEEecc----HHHHHHhh--hhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHH
Confidence 4443221 1111 25677766433 56666666 457763 442 236667787
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecc
Q 040813 334 AGTEAIAKKLAELSGKGVTTIIGGG 358 (401)
Q Consensus 334 ~GT~~i~~aia~~~~~~a~sivGGG 358 (401)
+=..+=|+++|+.-.+..|.|++||
T Consensus 287 ~qVv~NAkaLAe~l~~~G~~vvsGg 311 (413)
T COG0112 287 KQVVKNAKALAEALKERGFKVVSGG 311 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCeEecCC
Confidence 7777667777764332236666654
No 32
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.92 E-value=66 Score=33.40 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=29.3
Q ss_pred hcCCCCCeEEEecCC-ccccHHHHHHHHHHhcCeEEEchHHHHHH
Q 040813 187 VSNPKKPFAAIVGGS-KVSTKIGVIESLLEKVDILLLGGGMIFTF 230 (401)
Q Consensus 187 ~~~p~rP~vaIlGGa-KvsdKi~~i~~Ll~kvD~lliGG~ma~tF 230 (401)
++.-.+|.++|+||. |-.|-=.+++.+.+.+|.+++-|--+..+
T Consensus 338 l~~~~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G~~~~~l 382 (445)
T PRK04308 338 IAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQI 382 (445)
T ss_pred HHhCCCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEECCCHHHH
Confidence 333345789999977 66565556655556789988888654444
No 33
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.37 E-value=55 Score=26.88 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhhCCCeE
Q 040813 248 LDLATSLMEKAKSKGVSL 265 (401)
Q Consensus 248 ~~~a~~il~~a~~~~~~I 265 (401)
.+....+.+.|+++++++
T Consensus 61 H~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred hHHHHHHHHHHHHcCCcE
Confidence 445555666677776643
No 34
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=46.45 E-value=22 Score=33.85 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=27.1
Q ss_pred Ccccchh--hHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 34 LNITDDN--RVRAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 34 g~I~D~~--RI~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
|.++++. .+..+...|+.|.++|.+++++| |||
T Consensus 8 GTll~~~~~~~~~~~~~i~~l~~~g~~~~~~T--gR~ 42 (256)
T TIGR01486 8 GTLLDPHGYDWGPAKEVLERLQELGIPVIPCT--SKT 42 (256)
T ss_pred CCCcCCCCcCchHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 6666654 46778899999999999999997 886
No 35
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=46.39 E-value=68 Score=33.43 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=49.1
Q ss_pred CCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEe---------cCCCCCCCCCCCChhhHH
Q 040813 17 GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS---------HLGRPKGVTPKYSLKPLV 81 (401)
Q Consensus 17 gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~S---------HlGRP~g~~~~~SL~~va 81 (401)
-||+.|.+=-++=.+.+ .-+|-.+|.+...+|-.|.++|.+|||+| |||.|+.+ ..++.++.+
T Consensus 6 ~~riVvKiGSs~Lt~~~-g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp-~~l~~kQA~ 77 (369)
T COG0263 6 ARRIVVKIGSSSLTDGT-GGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRP-KTLAEKQAA 77 (369)
T ss_pred ceEEEEEECcceeeCCC-CCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCC-cchHHHHHH
Confidence 38999999998877753 47889999999999999999999999987 47766543 334444443
No 36
>PLN02285 methionyl-tRNA formyltransferase
Probab=45.81 E-value=86 Score=31.95 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHHHHHC------CCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCce
Q 040813 45 AVPTIKYLMGH------GAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEV 92 (401)
Q Consensus 45 ~lpTI~~L~~~------gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V 92 (401)
++++++.|+++ +.. +.++|+-.||.|...+..-.|+.++..+ .|.|.
T Consensus 18 a~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~-~gIp~ 71 (334)
T PLN02285 18 AATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALD-RGFPP 71 (334)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHH-cCCCc
Confidence 67899999984 677 5567888888774344555567655544 47773
No 37
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=45.19 E-value=25 Score=33.38 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=26.3
Q ss_pred Ccccc-hhhHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 34 LNITD-DNRVRAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 34 g~I~D-~~RI~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
|.+++ +..+.++..+|+.|.++|.+++++| |||
T Consensus 8 GTLl~~~~~~~~~~~ai~~l~~~G~~~vi~T--gR~ 41 (225)
T TIGR02461 8 GTLLPPGYEPGPAREALEELKDLGFPIVFVS--SKT 41 (225)
T ss_pred CCCcCCCCCchHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 55554 4456678999999999999999996 886
No 38
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=43.26 E-value=7 Score=37.05 Aligned_cols=52 Identities=31% Similarity=0.603 Sum_probs=39.0
Q ss_pred EEEecccCCccccCCcHHHHHHHhhc--CCEEe-eccccc-ccccccch----hhhhcccCccccc
Q 040813 116 LLLENVRFHKEEEKNDPEFAKKLASL--ADLYV-NDAFGS-AHRAHAST----EGVAKFLKPSVAG 173 (401)
Q Consensus 116 lLLEN~Rf~~eE~~~~~~f~~~LA~l--~DvyV-NDAFg~-aHR~haS~----vgi~~~l~~~~aG 173 (401)
-+.+..||.+ |+|+....++ +||-| .+-||| |.|.||-. +||.-.+.||+|-
T Consensus 41 ~~f~~~r~~~------PdF~~n~~~yq~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAd 100 (191)
T COG0066 41 HLFEDWRYLD------PDFVLNVPPYQGGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFAD 100 (191)
T ss_pred cccccccccC------cchhhcCCccCCccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHH
Confidence 4577888765 8999999888 99988 999998 56889876 4665555455543
No 39
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=42.59 E-value=63 Score=31.72 Aligned_cols=47 Identities=30% Similarity=0.306 Sum_probs=37.2
Q ss_pred CEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecC
Q 040813 18 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHL 65 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHl 65 (401)
|++++.+=-++=-+++| -.|..||++....|..+.++|-+|||+||=
T Consensus 10 ~~iViK~Ggs~l~~~~~-~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 10 KRIVIKVGSSTLSYENG-KINLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred CEEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 56777766555444433 468899999999999999999999999995
No 40
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=41.81 E-value=40 Score=26.92 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHC-CCeEEEEecCCCCCC-CCCCCChhhHHHHHHhhhCCceeeccCCCC
Q 040813 41 RVRAAVPTIKYLMGH-GAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIG 100 (401)
Q Consensus 41 RI~~~lpTI~~L~~~-gakvvl~SHlGRP~g-~~~~~SL~~va~~L~~~L~~~V~f~~d~~g 100 (401)
+..+.+..|..++++ ....|.++=-|...| ....+. .++.+.|++.++.||.+.+|...
T Consensus 35 ~~~~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~nDa~s 95 (99)
T smart00732 35 NKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE-EAFAELLKERFNLPVVLVDERLA 95 (99)
T ss_pred CcchHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEeCCcc
Confidence 445567777777765 334555554443333 112233 88899999999999999998754
No 41
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=41.07 E-value=79 Score=28.53 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=31.6
Q ss_pred cccccccCCCCEEEEEeccCCccCCCC--cccch--hhHHHHHHHHHHHHHCCCe-EEEEecCC
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNL--NITDD--NRVRAAVPTIKYLMGHGAK-VILSSHLG 66 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g--~I~D~--~RI~~~lpTI~~L~~~gak-vvl~SHlG 66 (401)
.+...+|++||-|++.-+ .|-+.++ ..-+. +|.-..-.-.++..++||+ ||++.+..
T Consensus 39 dDYag~DVkGKIVlv~~g--~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 39 DDYAGLDVKGKVVVVLRN--DPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred hhcCCCCCCCcEEEEEcC--CCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 344556999999999754 3421111 01111 1111122356789999999 66666543
No 42
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=40.62 E-value=40 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 42 VRAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 42 I~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
...+.++|++|.++|.++.|+|-..|.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~ 55 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGI 55 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcc
Confidence 446778999999999999999988765
No 43
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=40.41 E-value=1.2e+02 Score=26.24 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=39.4
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCCCC----CCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGRPK----GVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGRP~----g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++=-+..-|. +..+.+.+=++..+.+.||+ ++++|+++--. ..-+-+|.+-+|+.|+.
T Consensus 44 ~v~g~dv~iiqs~~~~~--------nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 44 SVRGKDVFIIQSTSPPV--------NDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAKLLSA 114 (116)
T ss_dssp --TTSEEEEE---SSSH--------HHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHHHHHH
T ss_pred cccCCceEEEEecCCch--------hHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHHHHHh
Confidence 46667666654444333 46788889999999999987 77788865321 12244777888877764
No 44
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.03 E-value=89 Score=32.89 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=43.5
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 040813 49 IKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVR 122 (401)
Q Consensus 49 I~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~R 122 (401)
+-.+++.|-+||+... -.-....+.+.+-+.+|.+|.|+++..++...+++.. .+-.+++||---
T Consensus 95 ~l~ll~~GD~vl~~~~--------~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPs 159 (396)
T COG0626 95 LLALLKAGDHVLLPDD--------LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPS 159 (396)
T ss_pred HHHhcCCCCEEEecCC--------ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCC
Confidence 4555555655554333 1334555666666668999999999888777776664 567899998644
No 45
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.95 E-value=1.2e+02 Score=25.07 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=41.0
Q ss_pred cCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHH-cCCCCCceEEecchh--hHHHh
Q 040813 314 TTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEK-VGLADKMSHISTGGG--ASLEL 386 (401)
Q Consensus 314 ~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~-~g~~d~~shvSTGGG--A~Le~ 386 (401)
+.+.|.+..++. .-...+.++++.+.+ ...+...++||.+....-+. +.....++|+..|-| ++.++
T Consensus 51 ~pd~V~iS~~~~-----~~~~~~~~l~~~~k~-~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE~~~~~l 120 (121)
T PF02310_consen 51 RPDVVGISVSMT-----PNLPEAKRLARAIKE-RNPNIPIVVGGPHATADPEEILREYPGIDYVVRGEGEEAFPEL 120 (121)
T ss_dssp TCSEEEEEESSS-----THHHHHHHHHHHHHT-TCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTSSHHHH-
T ss_pred CCcEEEEEccCc-----CcHHHHHHHHHHHHh-cCCCCEEEEECCchhcChHHHhccCcCcceecCCChHHhhccc
Confidence 679999987643 234556778887433 34467999999883322221 100045899998877 44444
No 46
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=39.89 E-value=86 Score=29.80 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceee
Q 040813 41 RVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKM 94 (401)
Q Consensus 41 RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f 94 (401)
-|..+..+|+.|.++|.+++++|.-+ ..|-+..+++|.+++|.++..
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~-------~~~~~~~~~~l~~~~g~~~~~ 61 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNS-------SRSEEDYAEKLSSLLGVDVSP 61 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCC-------CCCHHHHHHHHHHhcCCCCCH
Confidence 36678899999999999999998655 235667889999988877653
No 47
>PRK05337 beta-hexosaminidase; Provisional
Probab=39.69 E-value=1.3e+02 Score=30.72 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=58.0
Q ss_pred EeccCCccCCCCcccchhhH-HHHHHHHHHHHHCCCeEEEEecCCCCC--CCCCCCChhhHHHHHHhhhCCceeeccCCC
Q 040813 23 RVDLNVPLDDNLNITDDNRV-RAAVPTIKYLMGHGAKVILSSHLGRPK--GVTPKYSLKPLVPRLSELLGVEVKMANDCI 99 (401)
Q Consensus 23 RvD~NvP~~~~g~I~D~~RI-~~~lpTI~~L~~~gakvvl~SHlGRP~--g~~~~~SL~~va~~L~~~L~~~V~f~~d~~ 99 (401)
+-+++.|+++ .+-..+ +..++--+.++++|+.-|+++|.--|. +..-.+|=.-+-+.|.+.+|-+=..+.|+.
T Consensus 176 dsh~~~~~~~----~~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l 251 (337)
T PRK05337 176 DSHVETPVDE----RPLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDL 251 (337)
T ss_pred CCCCCCCCCC----CCHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecch
Confidence 4455566542 112233 345777888899999999999988775 221235544455788888886644455554
Q ss_pred C--------HHHHHHHhcCCCC-cEEEEecc
Q 040813 100 G--------EEVEKMVAEIPEG-GVLLLENV 121 (401)
Q Consensus 100 g--------~~~~~~i~~l~~G-~vlLLEN~ 121 (401)
+ ...+.++++++.| |++|.-|-
T Consensus 252 ~m~a~~~~~~~~~~~~~al~AG~Dl~l~~~~ 282 (337)
T PRK05337 252 SMEGAAVAGDYAERAQAALDAGCDMVLVCNN 282 (337)
T ss_pred hhhhhhhcCCHHHHHHHHHHcCCCEEeeCCC
Confidence 2 2333445666666 77777654
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.16 E-value=53 Score=28.97 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcE
Q 040813 46 VPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGV 115 (401)
Q Consensus 46 lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~v 115 (401)
.-..+.|.++|+.+||++..|++ -...|+.. |.+|...+. ..++++|+.+..|+.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~-----------a~~~l~~~-GIkv~~~~~---~~V~e~i~~~~~g~l 109 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPN-----------AYNALKAA-GIKVYVAPG---GTVEEAIKAFLEGEL 109 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHH-----------HHHHHHHc-CcEEEecCC---CCHHHHHHHHhcCCc
Confidence 34678999999999999999964 12445554 677776655 468888888887764
No 49
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=38.75 E-value=60 Score=36.50 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEec----CCCC
Q 040813 17 GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSH----LGRP 68 (401)
Q Consensus 17 gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SH----lGRP 68 (401)
-||++|.+=-++=.+++| -.|..+|......|..|.++|.+|||+|| .|++
T Consensus 7 ~~~iViKiGss~lt~~~~-~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~ 61 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDG-RLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQ 61 (715)
T ss_pred CCEEEEEeCcceeECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchH
Confidence 488999988777555444 58888999999999999999999999999 5555
No 50
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=38.19 E-value=68 Score=28.76 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEe
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSS 63 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~S 63 (401)
.+..++|++||-||++-. .|-+..+. ..++....-.-++.+.++||+ ||+++
T Consensus 41 ~Dy~~iDVkGKIVlv~~g--~p~~~~~~--~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSG--GPAGIPSE--EGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred hhccCCCCCCeEEEEEcC--CCCccccc--cccccccHHHHHHHHHHCCCeEEEEEe
Confidence 344456999999999863 44221111 011111122357889999999 66655
No 51
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=37.88 E-value=67 Score=29.10 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=32.4
Q ss_pred ccchhhH----HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHH
Q 040813 36 ITDDNRV----RAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRL 84 (401)
Q Consensus 36 I~D~~RI----~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L 84 (401)
+.+..++ ..+.++|+.|.++|.++.|+|+..++. ....|.+.+.+++
T Consensus 34 ~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~--~~~~~~~~~~~~i 84 (166)
T TIGR01664 34 PTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIG--RGKLSAESFKNKI 84 (166)
T ss_pred cCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccc--cCcccHHHHHHHH
Confidence 4555555 458899999999999999999987652 1234554443333
No 52
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=37.84 E-value=70 Score=29.15 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=33.8
Q ss_pred ccccccCCCCEEEEEeccCCccCCC-Ccccch---hhHHHHHHHHHHHHHCCCe-EEEEecCCCC
Q 040813 9 VLKEADLKGKRVFVRVDLNVPLDDN-LNITDD---NRVRAAVPTIKYLMGHGAK-VILSSHLGRP 68 (401)
Q Consensus 9 ~l~d~d~~gK~VlvRvD~NvP~~~~-g~I~D~---~RI~~~lpTI~~L~~~gak-vvl~SHlGRP 68 (401)
+...+|++||-||++-+ .|-+.+ +.+... +|.-.--.-++...++||+ ||++++....
T Consensus 40 Dy~giDVkGKIVlv~~g--~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 40 DYAGLDVKGKIVLVLRH--EPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred hccCCCCCCeEEEEEcC--CcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 33456899999999644 353321 112111 2222222356788999999 8888775443
No 53
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=37.12 E-value=84 Score=30.42 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhh-CCceee
Q 040813 43 RAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELL-GVEVKM 94 (401)
Q Consensus 43 ~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L-~~~V~f 94 (401)
.+.-..++.|.++++. ||+++|+|......+....+..+..|.+.+ +.++.+
T Consensus 170 ~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~Il 223 (277)
T cd07410 170 ETAKKYVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAIL 223 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEE
Confidence 3555567777777887 999999997643212233344444555543 455544
No 54
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.40 E-value=1.5e+02 Score=30.74 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=29.7
Q ss_pred CCCeEEEecC-CccccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 191 KKPFAAIVGG-SKVSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 191 ~rP~vaIlGG-aKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
+++.++|+|| .|=.|--.+.+.+.+.++.+++-|.-+..+...
T Consensus 344 ~~~iilI~Gg~~k~~d~~~l~~~l~~~~~~vil~G~~~~~i~~~ 387 (448)
T PRK03803 344 QGKLVLIAGGDGKGADFSPLREPVAKYVRAVVLIGRDADKIAAA 387 (448)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 3578999998 465555556665656799998888766555443
No 55
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=35.61 E-value=65 Score=33.24 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=49.2
Q ss_pred CCCCEEEEEeccCC-----ccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCC--CCCCChhhHHHHHHhh
Q 040813 15 LKGKRVFVRVDLNV-----PLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV--TPKYSLKPLVPRLSEL 87 (401)
Q Consensus 15 ~~gK~VlvRvD~Nv-----P~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~--~~~~SL~~va~~L~~~ 87 (401)
++|+.+===.||++ |+..+|+|- .+|++.-+...-|+|. ..|-+|+ .+.+|++.+++...-+
T Consensus 127 ~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD--------~~~v~~~i~~~tkli~---IQRS~GY~~RpS~~I~eI~~~i~~v 195 (416)
T COG4100 127 LRGEGQGSLKDFGIKYKAVPLTADGKID--------IQAVKTAISDRTKLIG---IQRSKGYAWRPSLSIAEIEEMITFV 195 (416)
T ss_pred cCCCCcccHHHhCcceeecccccCCccc--------HHHHHHhcCccceEEE---EEeccCcCCCCcccHHHHHHHHHHH
Confidence 44444433346665 666556552 3456666667778764 4677774 4667877776655443
Q ss_pred ---hCCceeeccCCCCHHHH
Q 040813 88 ---LGVEVKMANDCIGEEVE 104 (401)
Q Consensus 88 ---L~~~V~f~~d~~g~~~~ 104 (401)
-..-+.|+|+|.|+-++
T Consensus 196 k~inpn~ivFVDNCYGEFvE 215 (416)
T COG4100 196 KEINPNVIVFVDNCYGEFVE 215 (416)
T ss_pred HhcCCCEEEEEeccchhhhh
Confidence 33458899999997553
No 56
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=34.79 E-value=1.3e+02 Score=27.49 Aligned_cols=58 Identities=21% Similarity=0.093 Sum_probs=32.5
Q ss_pred ccccccccCCCCEEEEEeccCCccCCCC--cccch---hhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 7 VSVLKEADLKGKRVFVRVDLNVPLDDNL--NITDD---NRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 7 i~~l~d~d~~gK~VlvRvD~NvP~~~~g--~I~D~---~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
..+..++|++||.|++- .|-|-..++ ..... ++--+----.+.+.++||+=||+-|.-
T Consensus 40 ~dDy~g~DVkGKiVvvl--~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 40 WDDYKGLDVKGKTVVIL--VNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccccCCCcCCcEEEEE--cCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 44666779999999875 345532110 00111 111122235678999999955555543
No 57
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=33.93 E-value=43 Score=31.73 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHH
Q 040813 44 AAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRL 84 (401)
Q Consensus 44 ~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L 84 (401)
++...|+.+.++|.++++.| |||- .++.++++.|
T Consensus 24 ~~~~ai~~~~~~G~~~~iaT--GR~~-----~~~~~~~~~l 57 (272)
T PRK10530 24 ESLEALARAREAGYKVIIVT--GRHH-----VAIHPFYQAL 57 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEc--CCCh-----HHHHHHHHhc
Confidence 34577999999999999997 8872 3455555443
No 58
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=33.43 E-value=2.2e+02 Score=24.54 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=35.6
Q ss_pred eEEEecCCccc--------cHHHHHHHHHHh--cCeEEEchH-----------HHHHHHHHcCCccCCcccccCc---hH
Q 040813 194 FAAIVGGSKVS--------TKIGVIESLLEK--VDILLLGGG-----------MIFTFYKAQGHSVGSSLVEEDK---LD 249 (401)
Q Consensus 194 ~vaIlGGaKvs--------dKi~~i~~Ll~k--vD~lliGG~-----------ma~tFl~a~G~~iG~sl~e~~~---~~ 249 (401)
.+.|+||..-. ..+.---.|.+. +..|++.|+ +...++..+|++-..-++|+.. .+
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~e 81 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYE 81 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHH
Confidence 35667776554 234333334432 666666666 2334455566544433555543 44
Q ss_pred HHHHHHHHHhhCCC
Q 040813 250 LATSLMEKAKSKGV 263 (401)
Q Consensus 250 ~a~~il~~a~~~~~ 263 (401)
-|....+.+++++.
T Consensus 82 na~~~~~~~~~~~~ 95 (150)
T cd06259 82 NARFSAELLRERGI 95 (150)
T ss_pred HHHHHHHHHHhcCC
Confidence 45555555555543
No 59
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.08 E-value=1.9e+02 Score=29.27 Aligned_cols=184 Identities=18% Similarity=0.288 Sum_probs=96.8
Q ss_pred CCEEEEEeccCCcc-----CCCC-cccchhh--HHHHHHHHHHHHHCCCeEEEEecCCCCC-----CCCC-CCChhhHHH
Q 040813 17 GKRVFVRVDLNVPL-----DDNL-NITDDNR--VRAAVPTIKYLMGHGAKVILSSHLGRPK-----GVTP-KYSLKPLVP 82 (401)
Q Consensus 17 gK~VlvRvD~NvP~-----~~~g-~I~D~~R--I~~~lpTI~~L~~~gakvvl~SHlGRP~-----g~~~-~~SL~~va~ 82 (401)
|.+|++|.==-.|= .+.| +|.|.|. ....--.++.+.++|.+||++.+-+-|. |+.+ ...+=.-.+
T Consensus 66 ~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~ 145 (298)
T PRK01045 66 GAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPE 145 (298)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHH
Confidence 88999996443332 1123 6777763 4555568899999999999999999996 2221 111111123
Q ss_pred HHHhh---hCCceeeccCCC--CHHHHHHHhcCCCCcEEEEecccC--Ccc---ccCCcHHHHHHHhhcCCEEeeccccc
Q 040813 83 RLSEL---LGVEVKMANDCI--GEEVEKMVAEIPEGGVLLLENVRF--HKE---EEKNDPEFAKKLASLADLYVNDAFGS 152 (401)
Q Consensus 83 ~L~~~---L~~~V~f~~d~~--g~~~~~~i~~l~~G~vlLLEN~Rf--~~e---E~~~~~~f~~~LA~l~DvyVNDAFg~ 152 (401)
.++++ ...++.++.... -++..+.++.|+.- ..|+++ +.. -+.+..+=+++||+-+|+.+- -|
T Consensus 146 e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~----~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miV--VG- 218 (298)
T PRK01045 146 DVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKER----FPEIQGPPKDDICYATQNRQEAVKELAPQADLVIV--VG- 218 (298)
T ss_pred HHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHh----CcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEE--EC-
Confidence 34443 336677776553 23344445544321 244554 211 123345568899999997662 12
Q ss_pred ccccccchh-hhhcccCcc-ccchhHH--HHHHHHHhhhcCCCCCeEEEecCCccccHH--HHHHHH
Q 040813 153 AHRAHASTE-GVAKFLKPS-VAGFLMQ--KELDYLVGAVSNPKKPFAAIVGGSKVSTKI--GVIESL 213 (401)
Q Consensus 153 aHR~haS~v-gi~~~l~~~-~aG~lme--kEl~~L~~~~~~p~rP~vaIlGGaKvsdKi--~~i~~L 213 (401)
-.|+|.+ -+.+.+... .--+++| .||.- ..+.. .-.|.|.+||--+|.+ .+++.|
T Consensus 219 --g~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~--~~l~~--~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 219 --SKNSSNSNRLREVAEEAGAPAYLIDDASEIDP--EWFKG--VKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred --CCCCccHHHHHHHHHHHCCCEEEECChHHCcH--HHhcC--CCEEEEEecCCCCHHHHHHHHHHH
Confidence 2223332 111111000 0122232 23321 12222 2359999999888876 444433
No 60
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.90 E-value=40 Score=33.48 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=36.7
Q ss_pred HHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc-hHHHHHH
Q 040813 181 DYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDK-LDLATSL 254 (401)
Q Consensus 181 ~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~-~~~a~~i 254 (401)
+.+.+++.....|. .|.||.|.+| -..|+.+-+ .+-+| |.|..+|+...+.+. ...++.|
T Consensus 182 ~~f~~vv~a~~vPV-viaGG~k~~~-~~~L~~v~~----ai~aG--------a~Gv~~GRNIfQ~~~p~~~~~al 242 (264)
T PRK08227 182 EGFERITAGCPVPI-VIAGGKKLPE-RDALEMCYQ----AIDEG--------ASGVDMGRNIFQSEHPVAMIKAV 242 (264)
T ss_pred HHHHHHHHcCCCcE-EEeCCCCCCH-HHHHHHHHH----HHHcC--------CceeeechhhhccCCHHHHHHHH
Confidence 56778888777885 5999999966 334433332 22244 467778887666543 3333333
No 61
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=32.89 E-value=89 Score=31.63 Aligned_cols=198 Identities=21% Similarity=0.263 Sum_probs=108.1
Q ss_pred ccccccccCCCCEEEEEeccCCcc-----C-CCCcccchhh--HHHHHHHHHHHHHCCCeEEEEecCCCCC-----C-CC
Q 040813 7 VSVLKEADLKGKRVFVRVDLNVPL-----D-DNLNITDDNR--VRAAVPTIKYLMGHGAKVILSSHLGRPK-----G-VT 72 (401)
Q Consensus 7 i~~l~d~d~~gK~VlvRvD~NvP~-----~-~~g~I~D~~R--I~~~lpTI~~L~~~gakvvl~SHlGRP~-----g-~~ 72 (401)
+..+++++ +|.+|++|.==-+|- + .+-++.|.|. ....--+.+...++|.++||+.|-|-|. | +.
T Consensus 58 ve~l~e~p-~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~ 136 (294)
T COG0761 58 VEELDEVP-DGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYP 136 (294)
T ss_pred ccccccCC-CCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccC
Confidence 34556666 888999986443332 1 2236777764 3344457788889999999999999997 3 33
Q ss_pred C-CCChhhHHHHHHhh---hCCceeeccCCC--CHHHHHHHhcCCCCcEEEEecccCCcc--ccCCcHHHHHHHhhcCCE
Q 040813 73 P-KYSLKPLVPRLSEL---LGVEVKMANDCI--GEEVEKMVAEIPEGGVLLLENVRFHKE--EEKNDPEFAKKLASLADL 144 (401)
Q Consensus 73 ~-~~SL~~va~~L~~~---L~~~V~f~~d~~--g~~~~~~i~~l~~G~vlLLEN~Rf~~e--E~~~~~~f~~~LA~l~Dv 144 (401)
+ ...|-.-.+.+.++ +..++.|+.... -++..+.++.|+.-=- -++-.+|..- =+.|...=++.||+-+|+
T Consensus 137 ~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p-~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl 215 (294)
T COG0761 137 EGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFP-KIEVPPFNDICYATQNRQDAVKELAPEVDL 215 (294)
T ss_pred CCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCc-cccCCcccccchhhhhHHHHHHHHhhcCCE
Confidence 3 24444444444444 344677766553 2334444544431100 0111111100 134566789999999999
Q ss_pred Eeecccccccccccchh----hhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHH--HHHHHHHH
Q 040813 145 YVNDAFGSAHRAHASTE----GVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKI--GVIESLLE 215 (401)
Q Consensus 145 yVNDAFg~aHR~haS~v----gi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi--~~i~~Ll~ 215 (401)
++- -| -.|+|.. -+++- .+..-.|++..=+.=...+. ..-.+.|-.||...|.| .+++.|-+
T Consensus 216 ~iV--VG---~~nSSNs~rL~eiA~~--~g~~aylId~~~ei~~~w~~--~~~~VGvTAGAStPd~lV~~Vi~~l~~ 283 (294)
T COG0761 216 VIV--VG---SKNSSNSNRLAEIAKR--HGKPAYLIDDAEEIDPEWLK--GVKTVGVTAGASTPDWLVQEVIAKLRE 283 (294)
T ss_pred EEE--EC---CCCCccHHHHHHHHHH--hCCCeEEeCChHhCCHHHhc--CccEEEEecCCCCCHHHHHHHHHHHHH
Confidence 873 22 2334442 22221 11223344332111122333 25569999999999987 55555543
No 62
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=32.49 E-value=6.8e+02 Score=27.18 Aligned_cols=168 Identities=13% Similarity=0.178 Sum_probs=87.8
Q ss_pred CCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHH--hcCCCC-cEEEEecccCCccccCCc
Q 040813 55 HGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMV--AEIPEG-GVLLLENVRFHKEEEKND 131 (401)
Q Consensus 55 ~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i--~~l~~G-~vlLLEN~Rf~~eE~~~~ 131 (401)
.+++|.+..+ + ....-++.|..+.+.+. ++++.++.+-+++.+.... +.++.+ .|+.+....|-.....+-
T Consensus 216 ~n~~Ili~d~---~--i~~~~~i~~~l~~i~~~-g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l 289 (545)
T PRK12852 216 DDAYILLHEK---K--LSGLQAMLPVLEAVVQS-GKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAML 289 (545)
T ss_pred cCceEEEecC---c--cCCHHHHHHHHHHHHHh-CcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHH
Confidence 3677766543 1 12223555655555543 6788887777777776654 344444 688887666532222222
Q ss_pred HHHHHHHhhcCCEEe-----------ecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCC----------
Q 040813 132 PEFAKKLASLADLYV-----------NDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNP---------- 190 (401)
Q Consensus 132 ~~f~~~LA~l~DvyV-----------NDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p---------- 190 (401)
..+++.. .+-++. .+.||.+-+..-+-..+. ++..+--...++..++.|.+.+++.
T Consensus 290 ~~ia~~t--Ga~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~-~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 290 EDIAILT--GGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTT-IVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred HHHHHhc--CCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEE-EEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2233221 112222 123555444333332111 1111111234455555555444332
Q ss_pred -------CCCeEEEecCCc----------cccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 191 -------KKPFAAIVGGSK----------VSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 191 -------~rP~vaIlGGaK----------vsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
.+-.+.++||+- +.|-+.++++.++. .++-|||.+..-+..
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~--g~VpGGGa~e~~~s~ 424 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQE--GIVPGGGVALLRAKK 424 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCchHHHHHHHH
Confidence 233467888864 66677777777765 699999998877654
No 63
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=32.20 E-value=1e+02 Score=29.46 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeec
Q 040813 42 VRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA 95 (401)
Q Consensus 42 I~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~ 95 (401)
+......|+.+. +++. ||++.|||......+.-..+.+|..|-+ -|.++.+-
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lid-aGaDiIiG 222 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGIEYENYPTPEQRELARALID-AGADIIIG 222 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHH-cCCCEEEe
Confidence 477788888887 5666 9999999977544454556667766655 36666553
No 64
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.02 E-value=1.6e+02 Score=26.36 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=49.8
Q ss_pred CCCcccccCh-HHHHHHHHHhcc--CCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchH---------
Q 040813 293 DGWMGLDVGP-DAIKSFSEALDT--TKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS--------- 360 (401)
Q Consensus 293 ~~~~~~DIGp-~Ti~~~~~~i~~--aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt--------- 360 (401)
.|+.+.|.|. .|.+.|.+...+ ++.|-...=+|--.. .-+++.+.+.+..-.+...++||+-.
T Consensus 28 ~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~-----~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~ 102 (134)
T TIGR01501 28 AGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEI-----DCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDV 102 (134)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHH-----HHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHH
Confidence 5777888888 556777777655 778888877764331 22335555544322234555666421
Q ss_pred HHHHHHcCCCCCceEEecchhhHHHhh
Q 040813 361 VAAVEKVGLADKMSHISTGGGASLELL 387 (401)
Q Consensus 361 ~~a~~~~g~~d~~shvSTGGGA~Le~L 387 (401)
...++++|+ +++..=+|.--..++||
T Consensus 103 ~~~l~~~Gv-~~vF~pgt~~~~iv~~l 128 (134)
T TIGR01501 103 EKRFKEMGF-DRVFAPGTPPEVVIADL 128 (134)
T ss_pred HHHHHHcCC-CEEECcCCCHHHHHHHH
Confidence 234788884 33333333444555554
No 65
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.02 E-value=1.7e+02 Score=25.88 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCCcccccChHH-HHHHHHHhcc--CCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchH---------
Q 040813 293 DGWMGLDVGPDA-IKSFSEALDT--TKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS--------- 360 (401)
Q Consensus 293 ~~~~~~DIGp~T-i~~~~~~i~~--aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt--------- 360 (401)
.||.+.|.|+.+ .+.+.+.+.+ ++.|...--++ .-....+.+.+.+.+....+...++||.-+
T Consensus 30 ~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~ 104 (137)
T PRK02261 30 AGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEV 104 (137)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHH
Confidence 578888999855 6777777765 67888876665 345556777777766532344566676532
Q ss_pred HHHHHHcCCCCCceEEecch
Q 040813 361 VAAVEKVGLADKMSHISTGG 380 (401)
Q Consensus 361 ~~a~~~~g~~d~~shvSTGG 380 (401)
..-++++| |+.|.++|
T Consensus 105 ~~~l~~~G----~~~vf~~~ 120 (137)
T PRK02261 105 EKKFKEMG----FDRVFPPG 120 (137)
T ss_pred HHHHHHcC----CCEEECcC
Confidence 13567777 45565544
No 66
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=31.72 E-value=99 Score=31.59 Aligned_cols=66 Identities=29% Similarity=0.432 Sum_probs=44.8
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeec-cCCC-CHHHHH-HHhcCCCCcE-EEEeccc
Q 040813 49 IKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA-NDCI-GEEVEK-MVAEIPEGGV-LLLENVR 122 (401)
Q Consensus 49 I~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~-~d~~-g~~~~~-~i~~l~~G~v-lLLEN~R 122 (401)
.++|.+||-+|+|+| | ..--|+.+++.+.+.-+.+|+++ -|+. +.++-+ .-+.|...|| +|.-|+=
T Consensus 66 A~eLAkrG~nvvLIs---R-----t~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 66 ARELAKRGFNVVLIS---R-----TQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred HHHHHHcCCEEEEEe---C-----CHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEeccc
Confidence 478899999999987 3 22348899999999999888885 3544 333222 2345566666 5555553
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=31.12 E-value=50 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCCC
Q 040813 42 VRAAVPTIKYLMGHGAK-VILSSHLGRP 68 (401)
Q Consensus 42 I~~~lpTI~~L~~~gak-vvl~SHlGRP 68 (401)
+.+.-..++.|.++|+. ||+++|+|..
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~l~H~G~~ 195 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIALSHSGYE 195 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCch
Confidence 34455567778788888 8999999975
No 68
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=30.84 E-value=5.8e+02 Score=27.78 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCeEEEecCCc----------cccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 192 KPFAAIVGGSK----------VSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 192 rP~vaIlGGaK----------vsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
+-.+.++||+- +.|-+.++++.++. .++-|||.+..-+..
T Consensus 374 ~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~--g~VpGGGa~e~~ls~ 423 (542)
T PRK12849 374 GVAVIKVGAATEVELKERKDRVEDALNATRAAVEE--GIVPGGGVALLRAAK 423 (542)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc--CeecCCCHHHHHHHH
Confidence 34567788865 66777888887775 699999998877654
No 69
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.49 E-value=1.7e+02 Score=30.50 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=32.2
Q ss_pred CCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 192 KPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 192 rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
++.++|+||-...+=+..|..++++++.+++-|.=+..+...
T Consensus 354 ~~i~~I~G~~d~~~~~~~L~~~~~~v~~v~~~g~~~~~l~~~ 395 (460)
T PRK01390 354 DRIYWIAGGKPKEGGIESLAPFFPRIAKAYLIGEAAEAFAAT 395 (460)
T ss_pred CCeEEEecCccCCCCHHHHHHHHHhhCEEEEECCCHHHHHHH
Confidence 477899999777677888888888899988877666555443
No 70
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=30.39 E-value=53 Score=33.07 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCe-EEEEecCC
Q 040813 44 AAVPTIKYLMGHGAK-VILSSHLG 66 (401)
Q Consensus 44 ~~lpTI~~L~~~gak-vvl~SHlG 66 (401)
+.-.+++.|.++|+. ||++||+|
T Consensus 195 ~~~~~v~~Lr~~gvD~II~LsH~g 218 (313)
T cd08162 195 QIQPSIDALTAQGINKIILLSHLQ 218 (313)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccc
Confidence 345678888889998 99999996
No 71
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=30.33 E-value=78 Score=29.94 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceee
Q 040813 38 DDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKM 94 (401)
Q Consensus 38 D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f 94 (401)
....+.+....|+.+.++ +. ||+++|+|......+......+|+.|-+ -|.++.+
T Consensus 157 ~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~-~G~D~Ii 212 (239)
T cd07381 157 NPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPTPEQRELARALID-AGADLVI 212 (239)
T ss_pred CccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCCHHHHHHHHHHHH-CCCCEEE
Confidence 334456677778888776 76 9999999975332232233444444432 1444444
No 72
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.99 E-value=77 Score=34.51 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=61.9
Q ss_pred CcccchhhHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCH----HHHHHHh
Q 040813 34 LNITDDNRVRAAVPTIKYLMGHGAKVILSSHL-GRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGE----EVEKMVA 108 (401)
Q Consensus 34 g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHl-GRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~----~~~~~i~ 108 (401)
|+=++=.+|- .+|++++.+|.|.+-= =|- |. ---|+-|+++|+.+.|.-|.+-..-.|. -+++||+
T Consensus 390 GKSTNLAKIa------yWLlqNkfrVLIAACDTFRs-GA--vEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~ 460 (587)
T KOG0781|consen 390 GKSTNLAKIA------YWLLQNKFRVLIAACDTFRS-GA--VEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQ 460 (587)
T ss_pred cccchHHHHH------HHHHhCCceEEEEeccchhh-hH--HHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHH
Confidence 4555544442 4788888888777531 111 10 1238889999999888766664443332 3566776
Q ss_pred cCC-CC-cEEEEecccCCccccCCcHHHHHHHhhcCCE
Q 040813 109 EIP-EG-GVLLLENVRFHKEEEKNDPEFAKKLASLADL 144 (401)
Q Consensus 109 ~l~-~G-~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~Dv 144 (401)
.-+ +| ||+|.+- +|-.+|++.+-+.|+++.++
T Consensus 461 ~a~~~gfDVvLiDT----AGR~~~~~~lm~~l~k~~~~ 494 (587)
T KOG0781|consen 461 EARNQGFDVVLIDT----AGRMHNNAPLMTSLAKLIKV 494 (587)
T ss_pred HHHhcCCCEEEEec----cccccCChhHHHHHHHHHhc
Confidence 554 33 8888875 34456788888888888763
No 73
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=29.94 E-value=5.3e+02 Score=27.22 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEE
Q 040813 39 DNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118 (401)
Q Consensus 39 ~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLL 118 (401)
.........++++|+++|.+|+++||..-...+ .-.-..++..+.+.+..+. .. .++.
T Consensus 256 ~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~--~~dD~~~~~~l~~~~~~~~-------------------~~-~vi~ 313 (426)
T PRK10017 256 QAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSY--NKDDRMVALNLRQHVSDPA-------------------RY-HVVM 313 (426)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecccCccCC--CCchHHHHHHHHHhccccc-------------------ce-eEec
Confidence 344466778999999999999999997421110 1112234455555543210 00 1222
Q ss_pred ecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhccc
Q 040813 119 ENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL 167 (401)
Q Consensus 119 EN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l 167 (401)
++ -++.++...+ +-||++| +.|-|+.+.+...-+
T Consensus 314 ~~--------~~~~e~~~iI-s~~dl~i------g~RlHa~I~a~~~gv 347 (426)
T PRK10017 314 DE--------LNDLEMGKIL-GACELTV------GTRLHSAIISMNFGT 347 (426)
T ss_pred CC--------CChHHHHHHH-hhCCEEE------EecchHHHHHHHcCC
Confidence 21 2344444444 5678887 589999987665544
No 74
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=29.53 E-value=4.1e+02 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.549 Sum_probs=29.1
Q ss_pred CCCCCCCCcccccChHHHHHHHHH-----hcc------CCeEEEeCcc
Q 040813 288 ATAIPDGWMGLDVGPDAIKSFSEA-----LDT------TKTIIWNGPM 324 (401)
Q Consensus 288 ~~~ip~~~~~~DIGp~Ti~~~~~~-----i~~------aktI~wNGP~ 324 (401)
...++..|.+-.|..++++.+.+. +.- +-|++++||+
T Consensus 144 a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~Pl 191 (223)
T TIGR00290 144 AEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPI 191 (223)
T ss_pred cCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCcc
Confidence 345788999999999999988875 332 2599999996
No 75
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=29.50 E-value=96 Score=29.72 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=61.4
Q ss_pred CCCCCCCCcccccChHHHHHHHHHhccC-CeEEEeCcccccCcccchHHHHHHHHHHHHhhCC-CcEEEEecchHHHHHH
Q 040813 288 ATAIPDGWMGLDVGPDAIKSFSEALDTT-KTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVE 365 (401)
Q Consensus 288 ~~~ip~~~~~~DIGp~Ti~~~~~~i~~a-ktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~-~a~sivGGGdt~~a~~ 365 (401)
.+..|..| +|=..|+..|-....+| ..|+-.-.-|+||. +..| .+.+.|..+.=+ +-++|=+ =+---+.
T Consensus 107 ~DplpHSW---~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~--~~~~--kLv~eI~A~dl~~~~t~vD~--~~P~Ll~ 177 (212)
T COG2054 107 TDPLPHSW---EVTSDSISVWIAAKAGATEVVKATDVDGIYEE--DPKG--KLVREIRASDLKTGETSVDP--YLPKLLV 177 (212)
T ss_pred CCCCCcce---eecccHHHHHHHHHcCCcEEEEEecCCccccc--CCcc--hhhhhhhHhhcccCcccccc--hhhHHHH
Confidence 35678899 88899999999999998 78899999999996 4455 677777554311 1111111 1112334
Q ss_pred HcCCCCCceEEecchh--hHHHhhcCCCCch
Q 040813 366 KVGLADKMSHISTGGG--ASLELLEGKTLPG 394 (401)
Q Consensus 366 ~~g~~d~~shvSTGGG--A~Le~LeG~~LPg 394 (401)
++++. .+|-.|+- -.+..+.|++-||
T Consensus 178 k~~m~---~~Vvng~~pervi~~lrGk~~v~ 205 (212)
T COG2054 178 KYKMN---CRVVNGKEPERVILALRGKEVVG 205 (212)
T ss_pred HcCCc---eEEECCCCHHHHHHHHhccccce
Confidence 44432 46666654 5667777777665
No 76
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=29.06 E-value=56 Score=33.86 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHhhhcCC---CCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc---hHHHHH
Q 040813 180 LDYLVGAVSNP---KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDK---LDLATS 253 (401)
Q Consensus 180 l~~L~~~~~~p---~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~---~~~a~~ 253 (401)
.+-+..++... .+| |.|.||.|.+| -.+++.+-+-+=. +-+| |.|.-+|+...+.+. ++.++.
T Consensus 267 ~~~~~~~V~ac~ag~vp-VviAGG~k~~~-~e~L~~v~~a~~~-i~aG--------a~Gv~iGRNIfQ~~~~ea~~~~~~ 335 (348)
T PRK09250 267 IDLVRYQVANCYMGRRG-LINSGGASKGE-DDLLDAVRTAVIN-KRAG--------GMGLIIGRKAFQRPMAEGVKLLNA 335 (348)
T ss_pred HHHHHHHHHhhccCCce-EEEeCCCCCCH-HHHHHHHHHHHHh-hhcC--------CcchhhchhhhcCCcHHHHHHHHH
Confidence 34445555554 566 78999999854 3344333222000 3355 467777887776543 666677
Q ss_pred HHHHHhhC
Q 040813 254 LMEKAKSK 261 (401)
Q Consensus 254 il~~a~~~ 261 (401)
|.+...+.
T Consensus 336 i~~i~~~~ 343 (348)
T PRK09250 336 IQDVYLDK 343 (348)
T ss_pred HHHHhcCC
Confidence 76665444
No 77
>PRK06247 pyruvate kinase; Provisional
Probab=28.94 E-value=57 Score=35.16 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=116.0
Q ss_pred HHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHH-----HhcCCCCcEEEE
Q 040813 46 VPTIKYLMGHGAKVI--LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM-----VAEIPEGGVLLL 118 (401)
Q Consensus 46 lpTI~~L~~~gakvv--l~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~-----i~~l~~G~vlLL 118 (401)
..+|+.|++.|..|. =+||-... .-..+-...+.+++.++++|...-|.-||+++-- --.|+.||.+.|
T Consensus 20 ~e~l~~li~aGm~v~RlN~SHg~~e----~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~~~l 95 (476)
T PRK06247 20 EDMIRKLVEAGADVFRLNFSHGDHD----DHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFADGKVQLANGQTFRL 95 (476)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCCCcEeccCCCEEEE
Confidence 468999999998753 46775532 2223334446677778888888888888876521 123677777666
Q ss_pred ecccCCcccc---CCcHHHHHHHhhcCCEEeecccccccc---cccch-------------hhhhcccCcc--ccchhHH
Q 040813 119 ENVRFHKEEE---KNDPEFAKKLASLADLYVNDAFGSAHR---AHAST-------------EGVAKFLKPS--VAGFLMQ 177 (401)
Q Consensus 119 EN~Rf~~eE~---~~~~~f~~~LA~l~DvyVNDAFg~aHR---~haS~-------------vgi~~~l~~~--~aG~lme 177 (401)
---.+...++ -+.++|.+.+.+---||++|.-=...= .--.+ -|+. +|.. -.-.|=|
T Consensus 96 ~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn--~p~~~~~~p~lte 173 (476)
T PRK06247 96 DVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVS--LPGTVLSVSALTE 173 (476)
T ss_pred EecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCccc--cCCcccCCCCCCH
Confidence 3222211111 134678888888888999987322210 00000 0111 0000 0112335
Q ss_pred HHHHHHHhhhcCCCCCeEEEe---------------cC-----CccccHHHH--HHHHHHhcCeEEEchHHHHHHHHHcC
Q 040813 178 KELDYLVGAVSNPKKPFAAIV---------------GG-----SKVSTKIGV--IESLLEKVDILLLGGGMIFTFYKAQG 235 (401)
Q Consensus 178 kEl~~L~~~~~~p~rP~vaIl---------------GG-----aKvsdKi~~--i~~Ll~kvD~lliGG~ma~tFl~a~G 235 (401)
|..+.|.-.+++. =-|+++- |. +|+.++-.+ |+.++..+|.|++|=+ -.|
T Consensus 174 kD~~di~f~~~~~-vD~ia~SFVr~a~Di~~~r~~l~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRG-------DLg 245 (476)
T PRK06247 174 KDRADLEFALELG-VDWVALSFVQRPEDVEEVRKIIGGRVPVMAKIEKPQAIDRLEAIVEASDAIMVARG-------DLG 245 (476)
T ss_pred HHHHHHHHHHHcC-CCEEEECCCCCHHHHHHHHHHhhhcCeEEEEECCHHHHHhHHHHHHHcCEEEEccc-------hhc
Confidence 5555554433321 1222221 21 577766543 5566777999999532 245
Q ss_pred CccCCcccccCchHHHHHHHHHHhhCCCeEEccce
Q 040813 236 HSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTD 270 (401)
Q Consensus 236 ~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D 270 (401)
.++|- ++.-..-+++++.|++.|..++.-.-
T Consensus 246 ve~g~----~~v~~~qk~ii~~~~~~gkpvI~ATQ 276 (476)
T PRK06247 246 VEVPL----EQVPLIQKRIIRAARRAGKPVVVATQ 276 (476)
T ss_pred cccCH----HHHHHHHHHHHHHHHHhCCCEEEECc
Confidence 55553 45566788999999999887655443
No 78
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=28.61 E-value=3.1e+02 Score=21.95 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=57.0
Q ss_pred cccchhhHHHHHHHHHHHHH-CCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCC
Q 040813 35 NITDDNRVRAAVPTIKYLMG-HGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPE 112 (401)
Q Consensus 35 ~I~D~~RI~~~lpTI~~L~~-~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~ 112 (401)
+|.-..|.+=++--.+++.. .+.+ ++|.+=.. ..+.+|-.++|.. .+.|+-++++.+.+.+.+.++.+..
T Consensus 2 Ri~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~----~~Dalsa~~~a~~----~~~PIll~~~~l~~~~~~~l~~~~~ 73 (92)
T PF04122_consen 2 RISGADRYETSAKVAKKFYPDNKSDKVYIASGDN----FADALSASPLAAK----NNAPILLVNNSLPSSVKAFLKSLNI 73 (92)
T ss_pred CCCCCCHHHHHHHHHHHhcccCCCCEEEEEeCcc----hhhhhhhHHHHHh----cCCeEEEECCCCCHHHHHHHHHcCC
Confidence 34557788888888888654 2444 66653322 3355666666544 6899999998899999999999988
Q ss_pred CcEEEEeccc
Q 040813 113 GGVLLLENVR 122 (401)
Q Consensus 113 G~vlLLEN~R 122 (401)
..++++-...
T Consensus 74 ~~v~iiGg~~ 83 (92)
T PF04122_consen 74 KKVYIIGGEG 83 (92)
T ss_pred CEEEEECCCC
Confidence 8988875443
No 79
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.56 E-value=2e+02 Score=30.75 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHHHhc--cCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHH-cCCCCCceEEecch
Q 040813 304 AIKSFSEALD--TTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEK-VGLADKMSHISTGG 380 (401)
Q Consensus 304 Ti~~~~~~i~--~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~-~g~~d~~shvSTGG 380 (401)
|.+.+.+.|. +.+.|....- ........++++.+-+. ..++.+|+||.+....-+. +.....+++|..|-
T Consensus 51 ~~~~~~~~l~~~~pdvVgis~~------t~~~~~a~~~~~~~k~~-~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 51 TDEKLVERLRAHCPDLVLITAI------TPAIYIACETLKFARER-LPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred CHHHHHHHHHhcCcCEEEEecC------cccHHHHHHHHHHHHHH-CCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCC
Confidence 3455555553 5677776542 12334566677766543 3478999999985443332 22235689999999
Q ss_pred h
Q 040813 381 G 381 (401)
Q Consensus 381 G 381 (401)
|
T Consensus 124 G 124 (497)
T TIGR02026 124 G 124 (497)
T ss_pred c
Confidence 9
No 80
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.40 E-value=2.5e+02 Score=28.75 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=48.3
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCCCC-----CCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGRPK-----GVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGRP~-----g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++--++.-|.+ ..+-+-+=++..|.+.||| .+++|.++--. ...+-.|.+-+|+.|+.
T Consensus 53 ~vrg~dV~ivqs~~~p~n--------d~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~ 124 (332)
T PRK00553 53 SVRNKDVVIFQSTCSPVN--------DSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTK 124 (332)
T ss_pred CCCCCEEEEEcCCCCCCc--------hHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHh
Confidence 578999999888776653 2488888899999999997 57888865322 11235678888888876
Q ss_pred h
Q 040813 87 L 87 (401)
Q Consensus 87 ~ 87 (401)
.
T Consensus 125 ~ 125 (332)
T PRK00553 125 A 125 (332)
T ss_pred c
Confidence 4
No 81
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=27.61 E-value=2.5e+02 Score=25.82 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCEEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCC-CCeEEEecCCccccHHHHH
Q 040813 132 PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPK-KPFAAIVGGSKVSTKIGVI 210 (401)
Q Consensus 132 ~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~-rP~vaIlGGaKvsdKi~~i 210 (401)
.+..+.+...+| |+ .|++.|. .+.|- .+ .+ .+ ...++.+.+...... .|.+++.||-+.. -+
T Consensus 122 ~e~~~~~~~~~d-~i--~~~~~~~---g~tg~-~~-~~--~~---~~~i~~~~~~~~~~~~~~~i~v~GGI~~~----nv 184 (220)
T PRK05581 122 LEPLEDVLDLLD-LV--LLMSVNP---GFGGQ-KF-IP--EV---LEKIRELRKLIDERGLDILIEVDGGINAD----NI 184 (220)
T ss_pred HHHHHHHHhhCC-EE--EEEEECC---CCCcc-cc-cH--HH---HHHHHHHHHHHHhcCCCceEEEECCCCHH----HH
Confidence 456777888889 43 1444332 33332 21 11 12 223333333332210 1667788998773 33
Q ss_pred HHHH-HhcCeEEEchHH
Q 040813 211 ESLL-EKVDILLLGGGM 226 (401)
Q Consensus 211 ~~Ll-~kvD~lliGG~m 226 (401)
..++ .-+|.+++|..+
T Consensus 185 ~~l~~~GaD~vvvgSai 201 (220)
T PRK05581 185 KECAEAGADVFVAGSAV 201 (220)
T ss_pred HHHHHcCCCEEEEChhh
Confidence 3344 348999998664
No 82
>PRK14558 pyrH uridylate kinase; Provisional
Probab=27.45 E-value=1.4e+02 Score=28.37 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=35.0
Q ss_pred CEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 18 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
||++|.+==++=-++++.-.|..+|+.....|+.+.++|.+|||++==|
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgG 49 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAG 49 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECcc
Confidence 4566665444433433456888999999999999999999988775334
No 83
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.39 E-value=2.6e+02 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 40 NRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 40 ~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
.-...+.++|++|.++|.+++++|...
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 335567789999999999999999876
No 84
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=26.79 E-value=2.3e+02 Score=29.15 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHHHhhhcCCCCCeEEEecCC-ccccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 180 LDYLVGAVSNPKKPFAAIVGGS-KVSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 180 l~~L~~~~~~p~rP~vaIlGGa-KvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
.+....++..-++|.++|+||. |-.|--.+.+.+.+.++.+++-|.-+..+...
T Consensus 320 ~~a~~~al~~~~~~ii~I~Gg~~~~~d~~~~~~~l~~~~~~v~~~G~~~~~l~~~ 374 (433)
T TIGR01087 320 VHATLAALSAFDNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIGEDAAKIAPL 374 (433)
T ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 3344444443345788999885 22222234444445577888888776665544
No 85
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.68 E-value=2.3e+02 Score=28.50 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=46.6
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCC-----CCCCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGR-----PKGVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGR-----P~g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++--+++-|.+ ..+.+-+=.+..|.+.||| ++++|.++- -....+-+|.+-+|+.|+.
T Consensus 44 ~v~g~~V~ii~s~~~~~n--------d~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~ 115 (309)
T PRK01259 44 NVRGKDVFIIQSTCAPTN--------DNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLET 115 (309)
T ss_pred CCCCCEEEEECCCCCCCc--------HHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhh
Confidence 578899988777655532 3588888899999999997 567777553 2112235788888888876
Q ss_pred h
Q 040813 87 L 87 (401)
Q Consensus 87 ~ 87 (401)
.
T Consensus 116 ~ 116 (309)
T PRK01259 116 A 116 (309)
T ss_pred c
Confidence 4
No 86
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.62 E-value=3.9e+02 Score=26.50 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=49.5
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCCC-----CCCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGRP-----KGVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGRP-----~g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++.-.+. | ++.++.+-+=.+..|.+.||| ++++|.++-- ...-+-+|.+-+|+.|+.
T Consensus 43 ~v~g~~v~i~~~~~-~--------~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~ 113 (285)
T PRK00934 43 EIDGEDVVIISTTY-P--------QDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISA 113 (285)
T ss_pred CcCCCEEEEEeCCC-C--------CcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHHHHHHH
Confidence 57888887755432 2 134688889899999999997 5678875532 112245889999999988
Q ss_pred hhCCceeec
Q 040813 87 LLGVEVKMA 95 (401)
Q Consensus 87 ~L~~~V~f~ 95 (401)
. +-.|..+
T Consensus 114 ~-~d~vitv 121 (285)
T PRK00934 114 Y-YDRIITI 121 (285)
T ss_pred h-cCEEEEE
Confidence 7 4445544
No 87
>PLN02461 Probable pyruvate kinase
Probab=26.53 E-value=86 Score=34.11 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=65.1
Q ss_pred HHHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHH-Hh-----cCCCCcEE
Q 040813 45 AVPTIKYLMGHGAKV--ILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM-VA-----EIPEGGVL 116 (401)
Q Consensus 45 ~lpTI~~L~~~gakv--vl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~-i~-----~l~~G~vl 116 (401)
+.++|+.|++.|..| +=+||-.. +.-...-...+..++.+|++|...-|.-||+++-- ++ .++.||.+
T Consensus 35 ~~e~l~~li~aGm~v~RlN~SHg~~----e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~~~~~~~i~l~~G~~v 110 (511)
T PLN02461 35 SVPMLEKLLRAGMNVARFNFSHGSH----EYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGFLKDGKPVQLKQGQEI 110 (511)
T ss_pred CHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccccCCCCceecCCCCEE
Confidence 457999999999875 34688332 11122233345566677999999999989887632 21 26778877
Q ss_pred EEecccCCcccc----CCcHHHHHHHhhcCCEEeeccc
Q 040813 117 LLENVRFHKEEE----KNDPEFAKKLASLADLYVNDAF 150 (401)
Q Consensus 117 LLEN~Rf~~eE~----~~~~~f~~~LA~l~DvyVNDAF 150 (401)
.|-.=.-..+++ -+-++|.+.+.+---||++|..
T Consensus 111 ~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~ 148 (511)
T PLN02461 111 TITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGT 148 (511)
T ss_pred EEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCE
Confidence 763210011111 1356899999998889999864
No 88
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.40 E-value=3e+02 Score=27.88 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=46.8
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCCCC-----CCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGRPK-----GVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGRP~-----g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++--....|.+ ..|-+-+=.+..|.+.||| ++++|.++--. ...+-.|.+-+|+.|+.
T Consensus 49 ~vrg~dV~iv~s~~~~~n--------d~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~ 120 (320)
T PRK02269 49 SIRGHHVFILQSTSSPVN--------DNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEV 120 (320)
T ss_pred CCCCCEEEEEecCCCCcc--------chHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhh
Confidence 578898888777666653 2477788888888889997 67888865322 12245788888888877
Q ss_pred h
Q 040813 87 L 87 (401)
Q Consensus 87 ~ 87 (401)
.
T Consensus 121 ~ 121 (320)
T PRK02269 121 A 121 (320)
T ss_pred c
Confidence 5
No 89
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=26.36 E-value=1.7e+02 Score=28.45 Aligned_cols=28 Identities=29% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCEEeecccccccccccchhhhhccc
Q 040813 133 EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL 167 (401)
Q Consensus 133 ~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l 167 (401)
++...++ -+|++| +-|-|+.+.+...-.
T Consensus 243 e~~~~i~-~~~~vI------~~RlH~~I~A~~~gv 270 (298)
T TIGR03609 243 ELLGLFA-SARLVI------GMRLHALILAAAAGV 270 (298)
T ss_pred HHHHHHh-hCCEEE------EechHHHHHHHHcCC
Confidence 4554444 488887 469999987766533
No 90
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=26.14 E-value=40 Score=33.44 Aligned_cols=57 Identities=18% Similarity=0.403 Sum_probs=43.2
Q ss_pred cCCCCEEEEEec---cCCccCC-CCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Q 040813 14 DLKGKRVFVRVD---LNVPLDD-NLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG 70 (401)
Q Consensus 14 d~~gK~VlvRvD---~NvP~~~-~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g 70 (401)
..++.++.|+-+ ..+|+.+ +..++....+.=+-+.|++|.++|..|+++++.|+|-|
T Consensus 13 ~~~~~~l~v~~~~~~~~iP~~~i~~Ivi~g~~~~lst~~l~~l~~~~I~v~f~~~~G~~~g 73 (278)
T TIGR03639 13 SLKLNQLVIKKDGEEVTLPLEDIDVILIENPQITISSALLSALAENNIALIFCDEKHLPVG 73 (278)
T ss_pred EEECCEEEEEECCceEEEehHHccEEEEeCCCEEEcHHHHHHHHHCCCeEEEECCCCCcce
Confidence 456777777765 2257752 23445555777788899999999999999999999987
No 91
>PLN02417 dihydrodipicolinate synthase
Probab=25.95 E-value=2.7e+02 Score=27.30 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=62.5
Q ss_pred CccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhh---CCceeeccCCCCHHH
Q 040813 28 VPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELL---GVEVKMANDCIGEEV 103 (401)
Q Consensus 28 vP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L---~~~V~f~~d~~g~~~ 103 (401)
.|++++|+ +|...+++. |++++++|.+ +++..+.| .-..+|.+.-.+.++... +..|..+-.+-....
T Consensus 11 TPf~~~g~-iD~~~~~~~---i~~l~~~Gv~Gi~~~GstG----E~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t 82 (280)
T PLN02417 11 TPYLPDGR-FDLEAYDSL---VNMQIENGAEGLIVGGTTG----EGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNST 82 (280)
T ss_pred CCcCCCCC-cCHHHHHHH---HHHHHHcCCCEEEECccCc----chhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccH
Confidence 58876665 777777775 5889999998 88888888 224677766665554433 333333322322233
Q ss_pred HHHHh----cCCCC-cEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccc
Q 040813 104 EKMVA----EIPEG-GVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFG 151 (401)
Q Consensus 104 ~~~i~----~l~~G-~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg 151 (401)
+++++ +-+.| |.+++-.=.|++--+..--+|-+.++....+|+-+..+
T Consensus 83 ~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~ 135 (280)
T PLN02417 83 REAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPG 135 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChh
Confidence 33332 23345 66666665555421111112333333322555554443
No 92
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=25.89 E-value=2e+02 Score=22.96 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeec
Q 040813 48 TIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA 95 (401)
Q Consensus 48 TI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~ 95 (401)
-+++.-+.++..|++.+.+|+.- ..+-+-.++++|-+...+||-.+
T Consensus 94 i~~~~~~~~~dliv~G~~~~~~~--~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 94 IIEFAEEHNADLIVMGSRGRSGL--ERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHTTCSEEEEESSSTTST--TTSSSHHHHHHHHHHTSSEEEEE
T ss_pred hhhccccccceeEEEeccCCCCc--cCCCcCCHHHHHHHcCCCCEEEe
Confidence 35667778899888887776532 33568899999999999998754
No 93
>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly. ; GO: 0004672 protein kinase activity, 0005524 ATP binding
Probab=25.70 E-value=33 Score=35.99 Aligned_cols=14 Identities=50% Similarity=0.681 Sum_probs=11.6
Q ss_pred cCCCCCceEEecch
Q 040813 367 VGLADKMSHISTGG 380 (401)
Q Consensus 367 ~g~~d~~shvSTGG 380 (401)
+-..|.|.|+||||
T Consensus 80 ~p~NddfYHisTGG 93 (434)
T PF05445_consen 80 YPANDDFYHISTGG 93 (434)
T ss_pred cccCCceEEEecCc
Confidence 34568899999998
No 94
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=25.48 E-value=1.6e+02 Score=30.62 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=37.9
Q ss_pred CEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEec
Q 040813 18 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSH 64 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SH 64 (401)
||+++.+=-++=-+.+| -+|..+|.+....|..|.++|.+|||+|-
T Consensus 6 kriVIKiGgs~L~~~~~-~l~~~~i~~la~~I~~l~~~G~~vvlVsS 51 (368)
T PRK13402 6 KRIVVKVGSSLLTPHHQ-GCSSHYLLGLVQQIVYLKDQGHQVVLVSS 51 (368)
T ss_pred cEEEEEEchhhccCCCC-CcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 68888877776554333 57889999999999999999999888887
No 95
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=25.40 E-value=2e+02 Score=27.90 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred cCCCCcccchhh-HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCC--CHHHHHH
Q 040813 30 LDDNLNITDDNR-VRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCI--GEEVEKM 106 (401)
Q Consensus 30 ~~~~g~I~D~~R-I~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~--g~~~~~~ 106 (401)
+|-+|.+.+..+ |..+..+|+.|.++|.+++++| .+...+.....+.|.+ +|.++. .++++ +..+...
T Consensus 7 ~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~T-------nns~~~~~~~~~~l~~-~G~~~~-~~~i~ts~~~~~~~ 77 (279)
T TIGR01452 7 FDCDGVLWLGERVVPGAPELLDRLARAGKAALFVT-------NNSTKSRAEYALKFAR-LGFNGL-AEQLFSSALCAARL 77 (279)
T ss_pred EeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEe-------CCCCCCHHHHHHHHHH-cCCCCC-hhhEecHHHHHHHH
Q ss_pred Hhc--CCCCcEEEE
Q 040813 107 VAE--IPEGGVLLL 118 (401)
Q Consensus 107 i~~--l~~G~vlLL 118 (401)
+++ ...+.|+++
T Consensus 78 l~~~~~~~~~v~~i 91 (279)
T TIGR01452 78 LRQPPDAPKAVYVI 91 (279)
T ss_pred HHhhCcCCCEEEEE
No 96
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=25.32 E-value=2e+02 Score=28.23 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=39.9
Q ss_pred hhcCCCCCeEEEecCCccc----------cHHHHHHHHHH--hcCeEEEchH-----------HHHHHHHHcCCccCCcc
Q 040813 186 AVSNPKKPFAAIVGGSKVS----------TKIGVIESLLE--KVDILLLGGG-----------MIFTFYKAQGHSVGSSL 242 (401)
Q Consensus 186 ~~~~p~rP~vaIlGGaKvs----------dKi~~i~~Ll~--kvD~lliGG~-----------ma~tFl~a~G~~iG~sl 242 (401)
+-+.|+++.+.|+|+++.. +.+..--.|.+ ++..|++.|+ |.. .|.++|++-..=+
T Consensus 39 ~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~-yLi~~GVp~e~Ii 117 (239)
T PRK10834 39 LQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRK-DLIAAGVDPSDIV 117 (239)
T ss_pred HhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHH-HHHHcCCCHHHEE
Confidence 3446889999999998752 23333333444 4788888886 333 3456777655555
Q ss_pred cccCchHHHHH
Q 040813 243 VEEDKLDLATS 253 (401)
Q Consensus 243 ~e~~~~~~a~~ 253 (401)
+|....+.-++
T Consensus 118 ~e~~s~nT~en 128 (239)
T PRK10834 118 LDYAGFRTLDS 128 (239)
T ss_pred ecCCCCCHHHH
Confidence 66655333333
No 97
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.27 E-value=2e+02 Score=28.72 Aligned_cols=53 Identities=19% Similarity=0.478 Sum_probs=39.3
Q ss_pred CccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhh
Q 040813 28 VPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELL 88 (401)
Q Consensus 28 vP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L 88 (401)
-|++++|+ .|-..+++. +++|+++|.+ ++++.+-| ....+|.+...+.++...
T Consensus 14 TPF~~dg~-vD~~a~~~l---v~~li~~Gv~gi~~~GttG----E~~~Ls~eEr~~v~~~~v 67 (299)
T COG0329 14 TPFDEDGS-VDEEALRRL---VEFLIAAGVDGLVVLGTTG----ESPTLTLEERKEVLEAVV 67 (299)
T ss_pred cCCCCCCC-cCHHHHHHH---HHHHHHcCCCEEEECCCCc----cchhcCHHHHHHHHHHHH
Confidence 48875577 787777765 5899999987 98888887 346788887766655443
No 98
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=81 Score=30.15 Aligned_cols=50 Identities=34% Similarity=0.410 Sum_probs=32.5
Q ss_pred ccCCCCEEEEEeccCCccCC-C---C----cc-----cchhhHHHHHHHHHHHHHCCCeEEEEe
Q 040813 13 ADLKGKRVFVRVDLNVPLDD-N---L----NI-----TDDNRVRAAVPTIKYLMGHGAKVILSS 63 (401)
Q Consensus 13 ~d~~gK~VlvRvD~NvP~~~-~---g----~I-----~D~~RI~~~lpTI~~L~~~gakvvl~S 63 (401)
+.+.| +=|+--|+|.|.|- + + .| +...-+..+-.||++|...+-|||+++
T Consensus 110 Fe~yg-~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 110 FELYG-TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred HHhcc-ceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEec
Confidence 35677 67889999999872 1 1 11 233455666777777776666777765
No 99
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.05 E-value=1.5e+02 Score=29.13 Aligned_cols=86 Identities=16% Similarity=0.330 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhC---Cceeecc--CC-CCHHHHHHHhcCC
Q 040813 39 DNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLG---VEVKMAN--DC-IGEEVEKMVAEIP 111 (401)
Q Consensus 39 ~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~---~~V~f~~--d~-~g~~~~~~i~~l~ 111 (401)
...+..++.-++.-.++|.. +|-.||.-||.=.++.--.+.-+..|.+.+. .+.++.+ ++ +..++ .+.+.
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~v---l~~l~ 92 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDV---LDDLD 92 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHH---HHHHh
Confidence 67788999999999999976 9999999998522222223444444544442 2333321 11 12222 35678
Q ss_pred CCcEEEEecccCCccc
Q 040813 112 EGGVLLLENVRFHKEE 127 (401)
Q Consensus 112 ~G~vlLLEN~Rf~~eE 127 (401)
.|.|.-|-+.|+.--|
T Consensus 93 ~g~I~tindskYlLIE 108 (254)
T COG4464 93 KGIILTINDSKYLLIE 108 (254)
T ss_pred cCccccccccceEEEE
Confidence 8888888888876665
No 100
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=25.02 E-value=2.3e+02 Score=28.43 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=46.2
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCC-----CCCCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGR-----PKGVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGR-----P~g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++--.++.| + ..|.+-+=.+..|.+.||| .+++|.++- -...-+-+|.+-+|+.|+.
T Consensus 46 ~v~g~~V~ivqs~~~~-n--------~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~ 116 (301)
T PRK07199 46 PVAGRTVVLVCSLDRP-D--------EKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG 116 (301)
T ss_pred CCCCCEEEEECCCCCC-c--------HHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh
Confidence 5788888887666544 3 3578888899999999997 457777553 2222346888999999985
No 101
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=24.99 E-value=75 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCC
Q 040813 42 VRAAVPTIKYLMGHGAK-VILSSHLGR 67 (401)
Q Consensus 42 I~~~lpTI~~L~~~gak-vvl~SHlGR 67 (401)
++++-..++.|.++|+. ||++||+|-
T Consensus 159 ~~~~~~~v~~lk~~~~D~VI~lsH~G~ 185 (285)
T cd07405 159 IHEAKEVVPELKQEKPDIVIAATHMGH 185 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccc
Confidence 34444566777777887 999999996
No 102
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=24.97 E-value=1.3e+02 Score=29.26 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCCEEEEEeccCCccCCC-C-------cccchhhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 16 KGKRVFVRVDLNVPLDDN-L-------NITDDNRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 16 ~gK~VlvRvD~NvP~~~~-g-------~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
.+|.=.+.+|.+-++.+. + ...|+.-+..+..+|+.|.++|.+++++||-.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~ 213 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD 213 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence 444345566887776431 1 12256667888999999999999999999643
No 103
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=24.96 E-value=6.5e+02 Score=24.52 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=36.2
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHH
Q 040813 48 TIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEK 105 (401)
Q Consensus 48 TI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~ 105 (401)
+-+-|.+-|++-||+-|--|..-. .-|-+.++..+...+..-.. +=-|+|+..++
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f--~Et~~~i~~Kv~~a~~~gl~-pIvCiGE~~~~ 130 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYF--GETDEDVAKKVKAALEAGLT-PILCVGETLEE 130 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcC--CCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHH
Confidence 456678889999999999998543 23566777777777643222 11377765543
No 104
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=24.88 E-value=26 Score=32.67 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.1
Q ss_pred CCeEEEeCcccccCcccchHHHHHHHHHHHHh
Q 040813 315 TKTIIWNGPMGVFEFDKFAAGTEAIAKKLAEL 346 (401)
Q Consensus 315 aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~ 346 (401)
++.||.-||||. |=..|.+++|+.
T Consensus 2 ~~~IvLiG~mGa--------GKSTIGr~LAk~ 25 (172)
T COG0703 2 NMNIVLIGFMGA--------GKSTIGRALAKA 25 (172)
T ss_pred CccEEEEcCCCC--------CHhHHHHHHHHH
Confidence 467899999998 888888888875
No 105
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=24.79 E-value=1.4e+02 Score=30.24 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=38.2
Q ss_pred CEEEEEeccCCccCCCCcc---cchhhHHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 040813 18 KRVFVRVDLNVPLDDNLNI---TDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I---~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~ 69 (401)
||++|-+=-|.=+++++.- .+..+|+.....|..|.++|..|| +.|=|-|.
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vv-iv~gngpq 54 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELV-ITHGNGPQ 54 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEE-EEECChHH
Confidence 6888888888866532232 457799999999999999998776 45666563
No 106
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=24.69 E-value=1.5e+02 Score=28.17 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeec
Q 040813 41 RVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA 95 (401)
Q Consensus 41 RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~ 95 (401)
.+.+....|++|.+ ++. ||+++|+|......+.-..+..|+.|-+ -|.++.+-
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~-~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEPTDEQRELAHALID-AGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCCCHHHHHHHHHHHH-cCCCEEEc
Confidence 35556666777765 476 8999999975322222223445555543 25555543
No 107
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.62 E-value=5.7e+02 Score=27.18 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=88.3
Q ss_pred CeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeec-cCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHH
Q 040813 57 AKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA-NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFA 135 (401)
Q Consensus 57 akvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~-~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~ 135 (401)
.+++++.- |.|.-...++.-+|.++.+. +.+|.++ -|+....+.++.+.... ..++.|+.. .+..++.
T Consensus 206 ~~ii~lvG---ptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~gAveQLk~yae-----~lgvpv~~~--~dp~dL~ 274 (407)
T PRK12726 206 HRIISLIG---QTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRSGAVEQFQGYAD-----KLDVELIVA--TSPAELE 274 (407)
T ss_pred CeEEEEEC---CCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCccHHHHHHHHhh-----cCCCCEEec--CCHHHHH
Confidence 45544443 44543356677777776543 7788886 46654434344333221 123333321 2233455
Q ss_pred HHHhh-----cCCEEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHH
Q 040813 136 KKLAS-----LADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVI 210 (401)
Q Consensus 136 ~~LA~-----l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i 210 (401)
+.+.. -+|+-+-|--|.+|+... + -.|+..+.+.. .|.-.+++.-.|.+-.|-..++
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr~~~d~~----------------~-l~EL~~l~~~~-~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNYLAEE----------------S-VSEISAYTDVV-HPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCccCHH----------------H-HHHHHHHhhcc-CCceEEEECCCcccHHHHHHHH
Confidence 54443 479888998888774411 1 13444444432 2332233334567777766666
Q ss_pred HHHHH-hcCeEEEc-------hHHHHHHHHHcCCcc---------CCcccccCchHHHHHHHHH
Q 040813 211 ESLLE-KVDILLLG-------GGMIFTFYKAQGHSV---------GSSLVEEDKLDLATSLMEK 257 (401)
Q Consensus 211 ~~Ll~-kvD~lliG-------G~ma~tFl~a~G~~i---------G~sl~e~~~~~~a~~il~~ 257 (401)
++.-. ..|.+|+. ||.++.+....|.+| ..++...+....++.++..
T Consensus 337 ~~f~~l~i~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~ 400 (407)
T PRK12726 337 PKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGT 400 (407)
T ss_pred HhcCcCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhcc
Confidence 55332 26677652 444455555555543 2334444445666666543
No 108
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=24.57 E-value=81 Score=29.06 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=31.6
Q ss_pred Ccccchhh--HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHH
Q 040813 34 LNITDDNR--VRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRL 84 (401)
Q Consensus 34 g~I~D~~R--I~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L 84 (401)
|.++++.+ +..+..+|+.|.++|-++++.| ||| ..+++++++.|
T Consensus 8 GTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~T--gR~-----~~~~~~~~~~l 53 (221)
T TIGR02463 8 GTLLDSHSYDWQPAAPWLTRLQEAGIPVILCT--SKT-----AAEVEYLQKAL 53 (221)
T ss_pred CCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEc--CCC-----HHHHHHHHHHc
Confidence 67777544 5668899999999999999987 665 23455555443
No 109
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=24.56 E-value=1.7e+02 Score=30.18 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.5
Q ss_pred CEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecC
Q 040813 18 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHL 65 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHl 65 (401)
||+++.+==++=-+++|. .|..+|++....|..|.++|.+|||++-=
T Consensus 1 ~riVIKiGgs~l~~~~~~-~~~~~i~~la~~I~~l~~~g~~vvlV~sG 47 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGS-LDRSHIAELVEQVAALHAAGHEVVIVSSG 47 (363)
T ss_pred CeEEEEeccceEeCCCCC-cCHHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 345555544432233333 78889999999999999999998888763
No 110
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.52 E-value=2.2e+02 Score=25.40 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCC-ceeeccCC--CCHHH--HHHHhcCC--CCcEE
Q 040813 44 AAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGV-EVKMANDC--IGEEV--EKMVAEIP--EGGVL 116 (401)
Q Consensus 44 ~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~-~V~f~~d~--~g~~~--~~~i~~l~--~G~vl 116 (401)
.+.++|++|.++|.++.|+| |.. ...+..+.+.+|. +..+..++ ..+.- .+.++.|+ ++.++
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~T--GD~---------~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAILT--GDN---------ESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp THHHHHHHHHHTTEEEEEEE--SSE---------HHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEE
T ss_pred hhhhhhhhhhccCcceeeee--ccc---------cccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEE
Confidence 47789999999999999998 421 1445566666776 32122222 22222 56666665 45666
Q ss_pred EE
Q 040813 117 LL 118 (401)
Q Consensus 117 LL 118 (401)
+.
T Consensus 200 ~v 201 (215)
T PF00702_consen 200 MV 201 (215)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 111
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.20 E-value=84 Score=29.18 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.7
Q ss_pred CCcccccChHHHHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHh
Q 040813 294 GWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAEL 346 (401)
Q Consensus 294 ~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~ 346 (401)
...++==|.-|++++.+++...++=.-+-|.+++-...|..+-.+..+.+.+.
T Consensus 99 a~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~ 151 (178)
T TIGR00730 99 AFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQE 151 (178)
T ss_pred EEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHC
Confidence 34445557799999999997655445567888888888998888888877654
No 112
>PRK10799 metal-binding protein; Provisional
Probab=24.16 E-value=63 Score=31.32 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccC
Q 040813 48 TIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMAND 97 (401)
Q Consensus 48 TI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d 97 (401)
+.....++|-.+|.++|.. .+.+-++.++++|++.++.+|.|.+.
T Consensus 199 ~~~~A~~~gl~li~~GH~~-----sE~~~~~~la~~L~~~~~~~~~~i~~ 243 (247)
T PRK10799 199 TIHSAREQGLHFYAAGHHA-----TERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_pred HHHHHHHCCCeEEEcCchH-----HHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 4555666776777777764 35567889999999999999999864
No 113
>PRK08187 pyruvate kinase; Validated
Probab=24.15 E-value=47 Score=35.93 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=72.1
Q ss_pred hhhHHHHHH--------HHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHH-H
Q 040813 39 DNRVRAAVP--------TIKYLMGHGAKV--ILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM-V 107 (401)
Q Consensus 39 ~~RI~~~lp--------TI~~L~~~gakv--vl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~-i 107 (401)
.+||..++| +|+.|++.|..| +=+||-+ | +.-..+-...+.+++.+|++|...-|.-||+++-- +
T Consensus 134 ~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~-~---e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRtG~l 209 (493)
T PRK08187 134 RTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDD-P---AAWQAMIGHLRQAERATGRRCKILMDLAGPKIRTGAV 209 (493)
T ss_pred CceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceeeccc
Confidence 466666663 899999999885 4567755 2 12234555667778889999999999989887531 1
Q ss_pred ------hcCCCCcEEEEecccCCc-cc-c-----CCcHHHHHHHhhcCCEEeecc
Q 040813 108 ------AEIPEGGVLLLENVRFHK-EE-E-----KNDPEFAKKLASLADLYVNDA 149 (401)
Q Consensus 108 ------~~l~~G~vlLLEN~Rf~~-eE-~-----~~~~~f~~~LA~l~DvyVNDA 149 (401)
-.|+.||.+.|-.-+-.. .+ . -+-++|.+.+.+---||++|.
T Consensus 210 ~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG 264 (493)
T PRK08187 210 AGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDG 264 (493)
T ss_pred CCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCC
Confidence 247888887774322111 10 1 124678999999889999985
No 114
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=23.94 E-value=2.9e+02 Score=27.81 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=46.8
Q ss_pred cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe--EEEEecCCCCC-----CCCCCCChhhHHHHHHh
Q 040813 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK--VILSSHLGRPK-----GVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 14 d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak--vvl~SHlGRP~-----g~~~~~SL~~va~~L~~ 86 (401)
+++||.|++--...-|.+ ..+.+-+=++..|.+.||| .+++|.++--. ...+-.|.+-+|+.|+.
T Consensus 35 ~v~g~~V~iv~s~~~p~n--------d~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~lL~~ 106 (302)
T PLN02369 35 SVRGCDVFLVQPTCPPAN--------ENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITE 106 (302)
T ss_pred CCCCCeEEEEecCCCCcc--------hHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHHHHHh
Confidence 578888888766655542 3588888899999999998 57788765322 12235778888888876
Q ss_pred h
Q 040813 87 L 87 (401)
Q Consensus 87 ~ 87 (401)
.
T Consensus 107 ~ 107 (302)
T PLN02369 107 A 107 (302)
T ss_pred c
Confidence 4
No 115
>PRK14104 chaperonin GroEL; Provisional
Probab=23.93 E-value=7.7e+02 Score=26.89 Aligned_cols=151 Identities=14% Similarity=0.199 Sum_probs=80.7
Q ss_pred hhhHHHHHHhhhCCceeeccCCCCHHHHHHHh--cCCCC-cEEEEecccCCccccCCcHHHHHHHhhcCCEEeec-----
Q 040813 77 LKPLVPRLSELLGVEVKMANDCIGEEVEKMVA--EIPEG-GVLLLENVRFHKEEEKNDPEFAKKLASLADLYVND----- 148 (401)
Q Consensus 77 L~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~--~l~~G-~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVND----- 148 (401)
+.|..+.+.+ .++|+.++..-+.+.+...+. .++.+ .|+.+...-|-.-...+-+.++.. ..+.++.+|
T Consensus 233 i~~~l~~i~~-~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~--tG~~~i~~~~~~~l 309 (546)
T PRK14104 233 LLPLLEAVVQ-TGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAIL--TGGQAISEDLGIKL 309 (546)
T ss_pred HHHHHHHHHH-hCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHH--hCCEEEecCCCCCc
Confidence 4444444433 378888888878888877654 55543 578887776643222222223322 122333331
Q ss_pred ------ccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCC-----------------CCeEEEecCCc---
Q 040813 149 ------AFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPK-----------------KPFAAIVGGSK--- 202 (401)
Q Consensus 149 ------AFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~-----------------rP~vaIlGGaK--- 202 (401)
-+|.+.+..-|---+ .++..+----.++..++.|.+-+++.. +-.+.++||+-
T Consensus 310 ~~~~~~~LG~a~~v~~~~~~~-~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~ 388 (546)
T PRK14104 310 ENVTLQMLGRAKKVMIDKENT-TIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVE 388 (546)
T ss_pred CcCCHHHCCceeEEEEcCCEE-EEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 244444332211111 111111112234555555555555432 33377889973
Q ss_pred -------cccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 203 -------VSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 203 -------vsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
+.|-+.++++.++. .++-|||.++.-+..
T Consensus 389 l~e~~r~i~Dal~a~~~ai~~--g~VpGGGa~e~~~s~ 424 (546)
T PRK14104 389 VKERKDRVDDAMHATRAAVEE--GIVPGGGVALLRASE 424 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CcCcCchHHHHHHHH
Confidence 67778888888775 699999998776654
No 116
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=23.90 E-value=1.7e+02 Score=32.96 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=53.2
Q ss_pred cccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCH---HHHHHHhcCC
Q 040813 35 NITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGE---EVEKMVAEIP 111 (401)
Q Consensus 35 ~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~---~~~~~i~~l~ 111 (401)
.|.|.+.+++.+.=--.|+|-|.++|+.=-+- +...+.-.+--.++|++.||.||......-|+ +..+++-.+.
T Consensus 87 nVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~---D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 87 NVVDATNLERNLYLTLQLLELGIPMILALNMI---DEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELA 163 (653)
T ss_pred EEcccchHHHHHHHHHHHHHcCCCeEEEeccH---hhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 48899999999995556778999866543222 11123445566799999999999987666554 4555555555
Q ss_pred CCcEE
Q 040813 112 EGGVL 116 (401)
Q Consensus 112 ~G~vl 116 (401)
+++..
T Consensus 164 ~~~~~ 168 (653)
T COG0370 164 ESKTT 168 (653)
T ss_pred ccccc
Confidence 55554
No 117
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.78 E-value=2.6e+02 Score=28.85 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=25.7
Q ss_pred CCCeEEEecCCc-cccHHHHHHHHHHhcCeEEEchHHHHHHH
Q 040813 191 KKPFAAIVGGSK-VSTKIGVIESLLEKVDILLLGGGMIFTFY 231 (401)
Q Consensus 191 ~rP~vaIlGGaK-vsdKi~~i~~Ll~kvD~lliGG~ma~tFl 231 (401)
+++.++|+||.. -.|--.+++.+. ++|.+++-|.=+..+.
T Consensus 342 ~~~ii~I~g~~~~~~~~~~l~~~l~-~~~~v~~~G~~~~~l~ 382 (447)
T PRK02472 342 NQPVVLLAGGLDRGNEFDELVPYLK-NVKAMVVFGETAEKLA 382 (447)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHh-ccCEEEEECCCHHHHH
Confidence 467899999864 233334555554 4999988776554443
No 118
>PRK08114 cystathionine beta-lyase; Provisional
Probab=23.74 E-value=4.6e+02 Score=27.40 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=49.0
Q ss_pred HhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhc---CCEEeecccccccccccchh
Q 040813 85 SELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASL---ADLYVNDAFGSAHRAHASTE 161 (401)
Q Consensus 85 ~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l---~DvyVNDAFg~aHR~haS~v 161 (401)
-+..|.+|.|++..-.+.++++++. +-.++++|..----.+..+-++.++..-+. +-++|-..|++.+-.++.-.
T Consensus 122 l~~~Gi~v~~vd~~d~~~l~~~l~~--~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~ 199 (395)
T PRK08114 122 LSKLGVTTTWFDPLIGADIAKLIQP--NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDF 199 (395)
T ss_pred HHhcCcEEEEECCCCHHHHHHhcCC--CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHc
Confidence 3446999999876555666666642 346888887665444544444555555554 55777888888776655555
Q ss_pred hh
Q 040813 162 GV 163 (401)
Q Consensus 162 gi 163 (401)
|.
T Consensus 200 Ga 201 (395)
T PRK08114 200 GI 201 (395)
T ss_pred CC
Confidence 54
No 119
>PHA03111 Ser/Thr kinase; Provisional
Probab=23.59 E-value=39 Score=35.44 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=27.2
Q ss_pred EEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHH---cCCCCCceEEecch
Q 040813 319 IWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEK---VGLADKMSHISTGG 380 (401)
Q Consensus 319 ~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~---~g~~d~~shvSTGG 380 (401)
.|--|.-+.+ -|.+=|++-+.-|++.. .+- -+---.+. +-..|.|.|+||||
T Consensus 44 ~w~p~v~l~~--yF~~f~~~tl~~i~~~~------yin--PSyfq~kdkrFyp~NddfYHisTGG 98 (444)
T PHA03111 44 SWAPSVRLLR--YFKNFNKETLDKIAEND------YIN--PSFFQQKDKRFYPINDDFYHISTGG 98 (444)
T ss_pred ccCCchHHHH--HHHhhcHHHHHhhhhcC------ccC--hHHHhcCcccccccCCceEEEecCc
Confidence 3544444443 35566666666776632 110 01111111 33568899999998
No 120
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.52 E-value=3e+02 Score=29.73 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred cCCCCEEEEEeccCC-ccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEe
Q 040813 14 DLKGKRVFVRVDLNV-PLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63 (401)
Q Consensus 14 d~~gK~VlvRvD~Nv-P~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~S 63 (401)
|++||+|||-.==.. |||+=--|++.+.=+--.---+.+..+||+|.|++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 689999998532222 33321123333332333444577888999999998
No 121
>PTZ00114 Heat shock protein 60; Provisional
Probab=23.51 E-value=8.2e+02 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCeEEEecCCc----------cccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 192 KPFAAIVGGSK----------VSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 192 rP~vaIlGGaK----------vsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
+-.+.++||+- +.|-+.++++.++ +.++-|||.+..-+..
T Consensus 387 ~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~--~gvVpGGGa~e~~~s~ 436 (555)
T PTZ00114 387 GVAVIKVGGASEVEVNEKKDRIEDALNATRAAVE--EGIVPGGGVALLRASK 436 (555)
T ss_pred CeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh--cCcccCCcHHHHHHHH
Confidence 44566788864 6778888888877 6799999998887654
No 122
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=23.41 E-value=5e+02 Score=24.32 Aligned_cols=117 Identities=16% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCeEEEecCCccccHHHHHHHHHH----hcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEE
Q 040813 191 KKPFAAIVGGSKVSTKIGVIESLLE----KVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLL 266 (401)
Q Consensus 191 ~rP~vaIlGGaKvsdKi~~i~~Ll~----kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~ 266 (401)
..+.+.|.||-.+.|.++-+..-.. .+|.+=+-.-.=|.++.+ +...+.. ......+...+ +...+.|+
T Consensus 24 ~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~---~~~~~~~-~~~~~~~~~~~---~~g~ipV~ 96 (203)
T cd04240 24 GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLA---DLEPRLV-ARTLAELTDVL---ERGKIAIL 96 (203)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh---ccCCccc-cCCHHHHHHHH---HCCCcEEE
Confidence 6789999999999998876654222 267765555555555543 1222222 22233444443 33456688
Q ss_pred ccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccC-CeEEEeCcccccCcc
Q 040813 267 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTT-KTIIWNGPMGVFEFD 330 (401)
Q Consensus 267 lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~a-ktI~wNGP~GvfE~~ 330 (401)
.|..+..+ .++++.+| ++-..|+..+-...-+| +-|+..-.-|+|..+
T Consensus 97 ~P~~~~~~-------------~~~~~~~~---~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d 145 (203)
T cd04240 97 LPYRLLLD-------------TDPLPHSW---EVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD 145 (203)
T ss_pred eCchhhcc-------------cCCCCccc---ccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC
Confidence 88766532 23455666 77778887654444445 577778899999743
No 123
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=23.23 E-value=90 Score=30.13 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCCC
Q 040813 42 VRAAVPTIKYLMGHGAK-VILSSHLGRP 68 (401)
Q Consensus 42 I~~~lpTI~~L~~~gak-vvl~SHlGRP 68 (401)
.++.-..++.+.++|+. ||+++|+|.+
T Consensus 157 ~~~~~~~v~~~~~~~~D~iVvl~H~g~~ 184 (257)
T cd07406 157 VETARELVDELREQGADLIIALTHMRLP 184 (257)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeccCch
Confidence 44445566677788988 9999999975
No 124
>PLN02765 pyruvate kinase
Probab=23.18 E-value=89 Score=34.15 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHH-----HHhcCCCCcEEEE
Q 040813 46 VPTIKYLMGHGAKVI--LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEK-----MVAEIPEGGVLLL 118 (401)
Q Consensus 46 lpTI~~L~~~gakvv--l~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~-----~i~~l~~G~vlLL 118 (401)
..+|+.|++.|..|. =+||-.. +.-...-...+.+++.++++|...-|.-||+++- .--.|+.|+.+.|
T Consensus 43 ~e~l~~li~aGm~v~RlNfSHg~~----e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~i~l~~G~~~~l 118 (526)
T PLN02765 43 VEVIEACLKAGMSVARFDFSWGDA----EYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTEKPISLKAGNTVTL 118 (526)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCCCcEecCCCCEEEE
Confidence 479999999999854 3688653 1222333344556667899999888998988752 1123667777766
Q ss_pred ecccCCcccc----CCcHHHHHHHhhcCCEEeecc
Q 040813 119 ENVRFHKEEE----KNDPEFAKKLASLADLYVNDA 149 (401)
Q Consensus 119 EN~Rf~~eE~----~~~~~f~~~LA~l~DvyVNDA 149 (401)
-.=.-..+++ -+-++|.+.+.+---||++|.
T Consensus 119 ~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG 153 (526)
T PLN02765 119 TPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQY 153 (526)
T ss_pred ecccccCCCCCEEeechHHHHhhcCCCCEEEECCc
Confidence 3211101111 134689999999999999984
No 125
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=23.11 E-value=5.9e+02 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.558 Sum_probs=24.8
Q ss_pred eCCCCCCCCcccccChHHHHHHHHH-----hccC------CeEEEeCcc
Q 040813 287 PATAIPDGWMGLDVGPDAIKSFSEA-----LDTT------KTIIWNGPM 324 (401)
Q Consensus 287 ~~~~ip~~~~~~DIGp~Ti~~~~~~-----i~~a------ktI~wNGP~ 324 (401)
....+++.|.+-.+..++++.+.+. +.-| -|.+++||+
T Consensus 143 ~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEfhT~V~dgPl 191 (218)
T PF01902_consen 143 DADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGEFHTFVVDGPL 191 (218)
T ss_dssp ESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTTEEEEEEE-TT
T ss_pred eccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCeeEEEEEEEccc
Confidence 4456888999999999999999887 5544 499999995
No 126
>PLN02762 pyruvate kinase complex alpha subunit
Probab=23.09 E-value=83 Score=34.23 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=67.3
Q ss_pred HHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHH------HhcCCCCcEEE
Q 040813 46 VPTIKYLMGHGAKV--ILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM------VAEIPEGGVLL 117 (401)
Q Consensus 46 lpTI~~L~~~gakv--vl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~------i~~l~~G~vlL 117 (401)
..+|+.|++.|..| +=+||-.. +.-...-...+.+++.+|++|...-|.-||+++-- --.|++||.+.
T Consensus 40 ~e~l~~li~aGm~v~RlNfSHg~~----e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~~i~l~~G~~v~ 115 (509)
T PLN02762 40 FEQLEALAMGGMNVARLNMCHGTR----EWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWT 115 (509)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCCccEEecCCCEEE
Confidence 47999999999885 34677542 22233334456777788999999999988876521 12367888877
Q ss_pred EecccCCccc---c---CCcHHHHHHHhhcCCEEeeccc
Q 040813 118 LENVRFHKEE---E---KNDPEFAKKLASLADLYVNDAF 150 (401)
Q Consensus 118 LEN~Rf~~eE---~---~~~~~f~~~LA~l~DvyVNDAF 150 (401)
|-.-.+ .++ + -+-++|.+.+.+--.||++|..
T Consensus 116 lt~~~~-~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~ 153 (509)
T PLN02762 116 FTVRKF-DGSRPEFTIQVNYDGFAEDVKVGDELVVDGGM 153 (509)
T ss_pred EeCCcc-CCCCCCcEEeechHHHHHhcCCCCEEEEeCCE
Confidence 753221 121 1 1346899999999999999874
No 127
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=23.08 E-value=99 Score=31.91 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHC-CCe---EEEEecCCCCCCCCCCCChh---hHHHHHHhhhCCceeeccCCCCHH
Q 040813 40 NRVRAAVPTIKYLMGH-GAK---VILSSHLGRPKGVTPKYSLK---PLVPRLSELLGVEVKMANDCIGEE 102 (401)
Q Consensus 40 ~RI~~~lpTI~~L~~~-gak---vvl~SHlGRP~g~~~~~SL~---~va~~L~~~L~~~V~f~~d~~g~~ 102 (401)
.-.+.-.|.|+.++++ |.+ +=.++=--.|+ -+.+|. -.|+-|+..+++|+.=+....|--
T Consensus 48 ~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPG---l~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi 114 (345)
T PTZ00340 48 HHREHILSLVKEALEEAKITPSDISLICYTKGPG---MGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHI 114 (345)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC---cHhhHHHHHHHHHHHHHHcCCCEeecchHHHHH
Confidence 3356666777877764 221 11111122343 223443 467889999999988777665543
No 128
>KOG3729 consensus Mitochondrial glycerol-3-phosphate acyltransferase GPAT [Lipid transport and metabolism]
Probab=22.75 E-value=33 Score=37.52 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=10.2
Q ss_pred EEEEeccCCccC
Q 040813 20 VFVRVDLNVPLD 31 (401)
Q Consensus 20 VlvRvD~NvP~~ 31 (401)
=+||+|||-|+.
T Consensus 330 G~vR~DF~~P~S 341 (715)
T KOG3729|consen 330 GVVRMDFGRPIS 341 (715)
T ss_pred CeEEEecCCCcc
Confidence 378999999984
No 129
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=22.75 E-value=1.2e+02 Score=28.51 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=35.7
Q ss_pred ccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEE
Q 040813 155 RAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILL 221 (401)
Q Consensus 155 R~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~ll 221 (401)
+.|=.++|... .+ ...| +.+.+.+ ++|++.|+||-|+.. .+.+.||..+
T Consensus 79 vvhLtmyga~~--~~------~~~~---ir~~~~~-~~p~LIvvGg~gvp~------evye~aDynl 127 (176)
T PRK03958 79 VVHLTMYGENI--QD------VEPE---IREAHRK-GEPLLIVVGAEKVPR------EVYELADWNV 127 (176)
T ss_pred EEEEEEecCCc--cc------hHHH---HHHhhcc-CCcEEEEEcCCCCCH------HHHhhCCEEe
Confidence 56778888864 23 2233 3344445 899999999999885 6788999988
No 130
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=22.63 E-value=1.4e+02 Score=26.93 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Q 040813 43 RAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 43 ~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
....++|++|.++|.+++++|.++
T Consensus 32 pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 32 KGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCc
Confidence 457889999999999999999984
No 131
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.45 E-value=1.2e+02 Score=27.69 Aligned_cols=141 Identities=24% Similarity=0.374 Sum_probs=72.5
Q ss_pred CccccHHHHHHHHH--HhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccc
Q 040813 201 SKVSTKIGVIESLL--EKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFA 278 (401)
Q Consensus 201 aKvsdKi~~i~~Ll--~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~ 278 (401)
+..++-+...+.++ +.+|.||..|+.|...=+. +++.==-++-...|. -+.+.+|++++.+| .+++
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~--~~iPVV~I~~s~~Di-l~al~~a~~~~~~I-----avv~---- 84 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAELLRKH--VSIPVVEIPISGFDI-LRALAKAKKYGPKI-----AVVG---- 84 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC---SS-EEEE---HHHH-HHHHHHCCCCTSEE-----EEEE----
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHh--CCCCEEEECCCHhHH-HHHHHHHHhcCCcE-----EEEe----
Confidence 34788888999884 4599999999988875322 232211123333343 44455666555443 1221
Q ss_pred CCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecc
Q 040813 279 ADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGG 358 (401)
Q Consensus 279 ~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGG 358 (401)
..+...+ ...+.+++.- +..+. .... ..++-..+.+....|+..||||+
T Consensus 85 ---------~~~~~~~----------~~~~~~ll~~-~i~~~-------~~~~----~~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 85 ---------YPNIIPG----------LESIEELLGV-DIKIY-------PYDS----EEEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp ---------ESS-SCC----------HHHHHHHHT--EEEEE-------EESS----HHHHHHHHHHHHHTT--EEEESH
T ss_pred ---------cccccHH----------HHHHHHHhCC-ceEEE-------EECC----HHHHHHHHHHHHHcCCcEEECCH
Confidence 1111111 4556666632 22221 1111 33455566555556889999999
Q ss_pred hHHHHHHHcCCCCCceEEecchhhHHHh
Q 040813 359 DSVAAVEKVGLADKMSHISTGGGASLEL 386 (401)
Q Consensus 359 dt~~a~~~~g~~d~~shvSTGGGA~Le~ 386 (401)
-++..++++|+.- -++-||--+..+.
T Consensus 134 ~~~~~A~~~gl~~--v~i~sg~esi~~A 159 (176)
T PF06506_consen 134 VVCRLARKLGLPG--VLIESGEESIRRA 159 (176)
T ss_dssp HHHHHHHHTTSEE--EESS--HHHHHHH
T ss_pred HHHHHHHHcCCcE--EEEEecHHHHHHH
Confidence 9999999999752 4444544444433
No 132
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.45 E-value=7.1e+02 Score=24.08 Aligned_cols=53 Identities=6% Similarity=0.060 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCC
Q 040813 44 AAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDC 98 (401)
Q Consensus 44 ~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~ 98 (401)
.-+..++.+.++|++=+++.-+.|-+.. .... .++.+.+.+..+.||..-..+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~-~~~n-~~~i~~i~~~~~~pv~~gGGi 83 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRG-SEPN-YELIENLASECFMPLCYGGGI 83 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCC-Cccc-HHHHHHHHHhCCCCEEECCCC
Confidence 4566789999999998888888876421 1112 234455555567787765554
No 133
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.22 E-value=2.9e+02 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=37.5
Q ss_pred CccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHH---HHHHhhhCCceee
Q 040813 28 VPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLV---PRLSELLGVEVKM 94 (401)
Q Consensus 28 vP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va---~~L~~~L~~~V~f 94 (401)
.|++++|+ +|...++++ |++|+++|.+ ++++.+.|. -..+|.+.-. +...+..+.++..
T Consensus 7 TPf~~dg~-iD~~~~~~~---i~~l~~~Gv~gi~~~GstGE----~~~ls~~Er~~l~~~~~~~~~~~~~v 69 (281)
T cd00408 7 TPFTADGE-VDLDALRRL---VEFLIEAGVDGLVVLGTTGE----APTLTDEERKEVIEAVVEAVAGRVPV 69 (281)
T ss_pred CCcCCCCC-cCHHHHHHH---HHHHHHcCCCEEEECCCCcc----cccCCHHHHHHHHHHHHHHhCCCCeE
Confidence 47876664 677777765 5899999998 888888883 2456654433 3444444433333
No 134
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=21.94 E-value=70 Score=29.16 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHHHHHHCCCeEEEEec-CCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHH
Q 040813 36 ITDDNRVRAAVPTIKYLMGHGAKVILSSH-LGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM 106 (401)
Q Consensus 36 I~D~~RI~~~lpTI~~L~~~gakvvl~SH-lGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~ 106 (401)
+.|.+++++.+.=...|++.|-.+|++=. ...- ....+..-++.|++.||.||..+...-|+.+.+.
T Consensus 85 VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a----~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 85 VVDATNLERNLYLTLQLLELGIPVVVVLNKMDEA----ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHH----HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHH----HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence 66777888888777777788766444332 2211 1223344578999999999988877766655443
No 135
>PLN00139 hypothetical protein; Provisional
Probab=21.87 E-value=49 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=15.5
Q ss_pred hcCCCCcEEEEecccCCcc
Q 040813 108 AEIPEGGVLLLENVRFHKE 126 (401)
Q Consensus 108 ~~l~~G~vlLLEN~Rf~~e 126 (401)
-.+++|||+||+|.|+--+
T Consensus 286 ~~Wq~GDvl~iDN~~~~HG 304 (320)
T PLN00139 286 FKWEKGDVLFLDNLALLHG 304 (320)
T ss_pred CCCCCCCEEEEeChhhhcC
Confidence 3578999999999997543
No 136
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.52 E-value=1.5e+02 Score=27.86 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=26.5
Q ss_pred ccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEe
Q 040813 13 ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63 (401)
Q Consensus 13 ~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~S 63 (401)
++++||+||| + .+|+ .+.-.++.|++.||+|+++|
T Consensus 5 l~l~gk~vlV-----v---GgG~--------va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLV-----V---GGGD--------VALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEE-----E---CcCH--------HHHHHHHHHHHCCCEEEEEc
Confidence 3689999987 2 2353 34567899999999998886
No 137
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=21.43 E-value=5.6e+02 Score=23.52 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=62.6
Q ss_pred EEEEEeccCCccCC-CCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeecc
Q 040813 19 RVFVRVDLNVPLDD-NLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMAN 96 (401)
Q Consensus 19 ~VlvRvD~NvP~~~-~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~ 96 (401)
||+|...++-|... .+..++..=+++.+ ++|.++|++ |++.-+-+-+ -.+..+.++. .|..
T Consensus 1 ~V~IKpN~~~~~~~~~~~~T~P~vv~avv---~~l~~~g~~~i~i~e~~~~~--------~~~~~~~~~~-~G~~----- 63 (206)
T PF04015_consen 1 RVLIKPNFVNPGPPESGATTHPEVVRAVV---EMLKEAGAKEIIIAESPGSG--------AADTREVFKR-SGYE----- 63 (206)
T ss_pred CEEEEeCCCCCCCCCCCccCCHHHHHHHH---HHHHHcCCCceEEEeCCCcc--------hHhHHHHHHH-cchh-----
Confidence 68999999988762 36777777777655 555678887 7776655432 1122222221 1210
Q ss_pred CCCCHHHHHHHhcCCCCcEEEEecccCCccccC-----CcHHHHHHHhhcCCEEeeccccccc
Q 040813 97 DCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEK-----NDPEFAKKLASLADLYVNDAFGSAH 154 (401)
Q Consensus 97 d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~-----~~~~f~~~LA~l~DvyVNDAFg~aH 154 (401)
+.+ + -...+++-+++.+++..... ..-.+.+.+.. +|++||=+-=-.|
T Consensus 64 ----~~~----~-~~g~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~e-aD~iInvp~lK~H 116 (206)
T PF04015_consen 64 ----EIA----E-EYGAELVDLDDEPWVEVPLPGGEHLKEFKVPRILLE-ADVIINVPKLKTH 116 (206)
T ss_pred ----hHH----H-hcCCcEEEccCCcccceeccCCeeeeeEEhhHHHHh-CCEEEEecCcccC
Confidence 000 0 02236666777666655432 12358888888 9999985433334
No 138
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=21.23 E-value=1.4e+02 Score=33.17 Aligned_cols=212 Identities=19% Similarity=0.255 Sum_probs=112.0
Q ss_pred cccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCC-CCHH-HHHHHhcCCC
Q 040813 35 NITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDC-IGEE-VEKMVAEIPE 112 (401)
Q Consensus 35 ~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~-~g~~-~~~~i~~l~~ 112 (401)
.-+|..-+.+++..|+.|.+.||.+|=++=++. ++.-.|+.+.+.|.+. |.+|..+.|+ +.+. +..+++.
T Consensus 33 t~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~----~~a~~l~~I~~~l~~~-G~~iPLVADIHF~~~~A~~a~~~--- 104 (611)
T PRK02048 33 TNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGV----REAENLMNINIGLRSQ-GYMVPLVADVHFNPKVADVAAQY--- 104 (611)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCH----HHHHhHHHHHHHHhhc-CCCCCEEEecCCCcHHHHHHHHh---
Confidence 346788899999999999999999998887774 3455677777776553 6677776665 3333 2222321
Q ss_pred CcEEEEecccCCccccC-----------CcHHHHHHHhhcCCEE---eec--ccccccc---cccchh-hh-hcccCccc
Q 040813 113 GGVLLLENVRFHKEEEK-----------NDPEFAKKLASLADLY---VND--AFGSAHR---AHASTE-GV-AKFLKPSV 171 (401)
Q Consensus 113 G~vlLLEN~Rf~~eE~~-----------~~~~f~~~LA~l~Dvy---VND--AFg~aHR---~haS~v-gi-~~~l~~~~ 171 (401)
.|.+|-+||--. .|++|++.|...-+-| |+- ..+++=| .|-|+. .+ .+| -++.
T Consensus 105 -----v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y-g~tp 178 (611)
T PRK02048 105 -----AEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY-GDTP 178 (611)
T ss_pred -----hCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh-CCCh
Confidence 566666665421 1455655554433221 111 1223322 144442 01 111 0111
Q ss_pred cchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcC-----eEEEch--------------HHHHHHHH
Q 040813 172 AGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVD-----ILLLGG--------------GMIFTFYK 232 (401)
Q Consensus 172 aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD-----~lliGG--------------~ma~tFl~ 232 (401)
.| ++|.=++++.-+-+.-=+-++.=+=-+.+..-+..-+.|..+.+ .=+.-| .++.--|.
T Consensus 179 e~-mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~~edg~IKSAigiGaLL 257 (611)
T PRK02048 179 EG-MVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGDGEDGRIKSAVGIGALL 257 (611)
T ss_pred HH-HHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCcCceehhHHHHHHHH
Confidence 22 44555555544433344555555544445555555566666553 222211 22333333
Q ss_pred HcCCccCC----ccccc--CchHHHHHHHHHHhhCCC
Q 040813 233 AQGHSVGS----SLVEE--DKLDLATSLMEKAKSKGV 263 (401)
Q Consensus 233 a~G~~iG~----sl~e~--~~~~~a~~il~~a~~~~~ 263 (401)
..|+ |. |+-++ +-+..|.+||+.++.+..
T Consensus 258 ~DGI--GDTIRVSlt~dP~~Ev~vAf~ILQa~r~R~~ 292 (611)
T PRK02048 258 ADGI--GDTIRVSLSEEPEAEIPVARKLVDYIRSREN 292 (611)
T ss_pred hcCC--ccEEEEeCCCChHHHHHHHHHHHHHHHhhcc
Confidence 3432 33 22222 228899999999987754
No 139
>PRK15389 fumarate hydratase; Provisional
Probab=21.04 E-value=4.6e+02 Score=28.87 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCCeEEccceEEEeccccCCCCeeEE-eCCCCCCCCcccccChHHHHHHH
Q 040813 252 TSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVV-PATAIPDGWMGLDVGPDAIKSFS 309 (401)
Q Consensus 252 ~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~-~~~~ip~~~~~~DIGp~Ti~~~~ 309 (401)
+++++..++ |.. ||+|+.= +-.-.+ |. .-|+||.+.-+||-|...+.
T Consensus 397 krl~e~~~~-G~~--lP~dl~g-------~~Iyh~GP~-~~~~g~~igs~GPTTS~RMd 444 (536)
T PRK15389 397 AKLKERLDA-GEG--LPQYLKD-------HPVYYAGPA-KTPEGYASGSFGPTTAGRMD 444 (536)
T ss_pred HHHHHHHhc-CCC--CCcCcCC-------CEEEEecCC-CCCCCceeeeeCCchHHHhh
Confidence 555555544 433 7998741 111111 22 23679999999999986543
No 140
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=20.99 E-value=1.1e+03 Score=25.68 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHhhhcCCCCCeE-EEecCCc----------cccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 182 YLVGAVSNPKKPFA-AIVGGSK----------VSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 182 ~L~~~~~~p~rP~v-aIlGGaK----------vsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
.|.+-+..-..|.. .++||+- +.|-+.++++.++. .++-|||.+..-+..
T Consensus 363 ~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~--g~VpGGGa~e~~~s~ 423 (542)
T PRK00013 363 KLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEE--GIVPGGGVALLRAAP 423 (542)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc--CcccCcHHHHHHHHH
Confidence 45554444445555 7788864 67778888888775 699999998877654
No 141
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=20.90 E-value=1.2e+02 Score=29.28 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=20.8
Q ss_pred HHHHHHH-HHHHHHCCCe-EEEEecCCCCC
Q 040813 42 VRAAVPT-IKYLMGHGAK-VILSSHLGRPK 69 (401)
Q Consensus 42 I~~~lpT-I~~L~~~gak-vvl~SHlGRP~ 69 (401)
+.+.-.. ++.+.++|+. ||+++|+|...
T Consensus 156 ~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~ 185 (257)
T cd07408 156 IEEAKKVIVAALKAKGADVIVALGHLGVDR 185 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCcCcCC
Confidence 3444444 6777788998 99999999864
No 142
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=20.85 E-value=1.4e+02 Score=33.12 Aligned_cols=210 Identities=18% Similarity=0.277 Sum_probs=120.6
Q ss_pred cccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCC-CCHH-HHHHHhcCCC
Q 040813 35 NITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDC-IGEE-VEKMVAEIPE 112 (401)
Q Consensus 35 ~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~-~g~~-~~~~i~~l~~ 112 (401)
.-+|..-+.+++..|+.|.+.||.+|=++=++. ++.-.|+.+.+.|.+. |.+|..+.|+ +-+. +..+++.
T Consensus 37 t~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~----~~A~al~~I~~~L~~~-g~~iPLVADIHF~~~~A~~a~~~--- 108 (606)
T PRK00694 37 TTTATTDVDGTVRQICALQEWGCDIVRVTVQGL----KEAQACEHIKERLIQQ-GISIPLVADIHFFPQAAMHVADF--- 108 (606)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCH----HHHHhHHHHHHHHhcc-CCCCCEEeecCCChHHHHHHHHh---
Confidence 346788899999999999999999998887773 3456777777777664 6677777665 3433 2333332
Q ss_pred CcEEEEecccCCccccC-----------CcHHHHHHHhhcCCEE---eec--ccccccc---cccchhhhhccc---Ccc
Q 040813 113 GGVLLLENVRFHKEEEK-----------NDPEFAKKLASLADLY---VND--AFGSAHR---AHASTEGVAKFL---KPS 170 (401)
Q Consensus 113 G~vlLLEN~Rf~~eE~~-----------~~~~f~~~LA~l~Dvy---VND--AFg~aHR---~haS~vgi~~~l---~~~ 170 (401)
.+.+|-+||--. .|++|++.|..+-+-| |+- ..+++=| .|-|+. .+++ -+.
T Consensus 109 -----vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~--~~i~~~yG~t 181 (606)
T PRK00694 109 -----VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLS--ERVMQRYGDT 181 (606)
T ss_pred -----cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCch--HHHHHHhCCC
Confidence 455666555422 1444444433332211 111 2233333 244543 1111 011
Q ss_pred ccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcC-----e-EEEc-------------hHHHHHHH
Q 040813 171 VAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVD-----I-LLLG-------------GGMIFTFY 231 (401)
Q Consensus 171 ~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD-----~-lliG-------------G~ma~tFl 231 (401)
..| ++|.=++++.-+-+.-=+-++.=+=-+.+..-++.-+-|.+++| . |.+| -.++.--|
T Consensus 182 peg-mVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~eg~~YPLHLGVTEAG~g~~G~IKSavGIG~L 260 (606)
T PRK00694 182 IEG-MVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPLHLGVTEAGSGTDGIIKSAVGIGTL 260 (606)
T ss_pred HHH-HHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhccCCCcCceeccccCcCCCCceeHHHHHHHHH
Confidence 122 45555555554444444666666655556666677777888888 1 2222 24566666
Q ss_pred HHcCCccCC----cccccCc--hHHHHHHHHHHhhCC
Q 040813 232 KAQGHSVGS----SLVEEDK--LDLATSLMEKAKSKG 262 (401)
Q Consensus 232 ~a~G~~iG~----sl~e~~~--~~~a~~il~~a~~~~ 262 (401)
.+.| ||. ||-|+.. +..|++|++...++.
T Consensus 261 L~dG--IGDTIRVSLT~dP~~Ev~va~~ll~~~~~~~ 295 (606)
T PRK00694 261 LSEG--LGDTIRCSLTGCPTNEIPVCISLLKHTTEYL 295 (606)
T ss_pred HHhC--CCCeEEEECCCChHHHHHHHHHHHHHHHHhh
Confidence 6665 354 6766544 889999998886653
No 143
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=20.74 E-value=1.1e+03 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCeEEEecCCc----------cccHHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 040813 192 KPFAAIVGGSK----------VSTKIGVIESLLEKVDILLLGGGMIFTFYKA 233 (401)
Q Consensus 192 rP~vaIlGGaK----------vsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a 233 (401)
+-...++||+- +.|-+.++++.++. .++-|||.+..-+..
T Consensus 372 ~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~--g~VpGGGa~e~~~s~ 421 (520)
T cd03344 372 GVAVIKVGGATEVELKEKKDRVEDALNATRAAVEE--GIVPGGGVALLRASP 421 (520)
T ss_pred CeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCcHHHHHHHH
Confidence 34567788863 66777788877776 599999998876653
No 144
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=20.67 E-value=1.9e+02 Score=30.93 Aligned_cols=106 Identities=18% Similarity=0.097 Sum_probs=56.0
Q ss_pred CCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEe-ecccccccccccchhhhhcccCccccchhH------HH----
Q 040813 110 IPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYV-NDAFGSAHRAHASTEGVAKFLKPSVAGFLM------QK---- 178 (401)
Q Consensus 110 l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyV-NDAFg~aHR~haS~vgi~~~l~~~~aG~lm------ek---- 178 (401)
..-.+--++=|+|.+++-..|-..+.-.+ +-+|.-+ .|--.--|..|+|...=.+ .+.+|..+ -.
T Consensus 93 f~~~~~~~~~nv~~~SG~~AN~av~~aL~-~pgD~Il~~d~~~gGhl~H~~~~~g~~---~s~~~~~~~~~~y~~~~~~g 168 (475)
T PLN03226 93 FRLDPEKWGVNVQPLSGSPANFAVYTALL-QPHDRIMGLDLPHGGHLSHGYQTDGKK---ISATSIYFESMPYRLDESTG 168 (475)
T ss_pred hCCCcceeEEecCcCchHHHHHHHHHHhC-CCCCEEEECCCCcCcchhhhhhhcccc---cccceEEEEeeeeeecCCCC
Confidence 43334456679998887766655544444 4456555 4655567899998652111 12222110 01
Q ss_pred --HHHHHHhhhcCCCCCeEEEecCCccccH--HHHHHHHHHhcCeE
Q 040813 179 --ELDYLVGAVSNPKKPFAAIVGGSKVSTK--IGVIESLLEKVDIL 220 (401)
Q Consensus 179 --El~~L~~~~~~p~rP~vaIlGGaKvsdK--i~~i~~Ll~kvD~l 220 (401)
.++.|.+++.. .+|.+.|+|.+-.+-- +.-|..+.++++.+
T Consensus 169 ~iD~d~Le~~l~~-~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~ 213 (475)
T PLN03226 169 LIDYDKLEKKAML-FRPKLIIAGASAYPRDWDYARMRKIADKVGAL 213 (475)
T ss_pred CcCHHHHHHHHhh-cCCeEEEEecCcCCCccCHHHHHHHHHHcCCE
Confidence 45666766653 2566677766544432 23344455554433
No 145
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=20.47 E-value=1.6e+02 Score=23.89 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=44.7
Q ss_pred EEEEecCCCCCCCCCCCChhhHHHHHHhhh-CCceee--ccCCCCHHHHHHHhcCCC---CcEEEEecccCCccccCCc
Q 040813 59 VILSSHLGRPKGVTPKYSLKPLVPRLSELL-GVEVKM--ANDCIGEEVEKMVAEIPE---GGVLLLENVRFHKEEEKND 131 (401)
Q Consensus 59 vvl~SHlGRP~g~~~~~SL~~va~~L~~~L-~~~V~f--~~d~~g~~~~~~i~~l~~---G~vlLLEN~Rf~~eE~~~~ 131 (401)
+||++|=.|-. ...-+++.+++.|++.. +.+|.. .+. --+.+.++++.+.. ..|+++.-.-|.-....+|
T Consensus 2 ivlv~hGS~~~--~~~~~~~~l~~~l~~~~~~~~v~~afle~-~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~d 77 (101)
T cd03416 2 LLLVGHGSRDP--RAAEALEALAERLRERLPGDEVELAFLEL-AEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKED 77 (101)
T ss_pred EEEEEcCCCCH--HHHHHHHHHHHHHHhhCCCCcEEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCcccccc
Confidence 68899955421 12247889999999987 455554 322 13456666666554 5788888887765555443
No 146
>PRK13774 formimidoylglutamase; Provisional
Probab=20.18 E-value=2.7e+02 Score=27.89 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCcccccChHHHHHHHHHhcc---CCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcE-EEEecchHHH
Q 040813 294 GWMGLDVGPDAIKSFSEALDT---TKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVT-TIIGGGDSVA 362 (401)
Q Consensus 294 ~~~~~DIGp~Ti~~~~~~i~~---aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~-sivGGGdt~~ 362 (401)
+..+.--||+.+..-...++. ...|++-|..=+ .......-.+++.+++++.-+.+.+ .++||+|+++
T Consensus 62 ~r~G~~~gP~aIR~as~~l~~~~~~~~i~D~Gdv~~-~~~~~~~~~~~i~~~v~~i~~~g~~pivlGGdHsit 133 (311)
T PRK13774 62 GRIGAKEGPDAIKQAFAGLPDLNQCETLVDYGNVYH-DHEELIDTQKEFAMLAAKSIANHRQTFLLGGGHDIA 133 (311)
T ss_pred CCcCHhHhHHHHHHHhhcCCcccccCeEEECCCCCC-CccHHHHHHHHHHHHHHHHHHCCCeEEEEcCchHHH
Confidence 445678899999887665542 226888887532 1112344456777777765555655 6678888775
Done!