Query 040813
Match_columns 401
No_of_seqs 130 out of 1036
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vpe_A Phosphoglycerate kinase 100.0 1E-154 4E-159 1162.9 41.7 391 8-400 3-395 (398)
2 1php_A 3-phosphoglycerate kina 100.0 2E-154 5E-159 1161.0 40.2 390 8-401 4-394 (394)
3 3q3v_A Phosphoglycerate kinase 100.0 7E-154 2E-158 1157.8 42.3 392 6-401 6-400 (403)
4 1v6s_A Phosphoglycerate kinase 100.0 8E-154 3E-158 1154.5 39.7 388 8-400 2-390 (390)
5 16pk_A PGK, 3-phosphoglycerate 100.0 4E-153 1E-157 1155.9 41.3 391 8-401 3-415 (415)
6 1qpg_A PGK, 3-phosphoglycerate 100.0 6E-153 2E-157 1155.6 39.0 391 8-401 6-414 (415)
7 4fey_A Phosphoglycerate kinase 100.0 1E-152 4E-157 1146.8 37.3 386 5-400 4-391 (395)
8 3oz7_A Phosphoglycerate kinase 100.0 1E-152 4E-157 1154.6 36.9 392 6-400 6-417 (417)
9 2wzb_A Phosphoglycerate kinase 100.0 1E-152 5E-157 1153.3 35.7 390 8-400 6-415 (416)
10 1zmr_A Phosphoglycerate kinase 100.0 1E-150 4E-155 1129.2 34.3 377 8-400 4-383 (387)
11 2cun_A Phosphoglycerate kinase 100.0 2E-148 6E-153 1121.8 35.2 379 7-400 1-400 (410)
12 1fw8_A PGK P72, phosphoglycera 100.0 1E-124 5E-129 949.2 32.3 326 73-400 2-343 (416)
13 1fw8_A PGK P72, phosphoglycera 99.8 1.3E-21 4.5E-26 198.2 8.3 64 7-71 350-414 (416)
14 3tqq_A Methionyl-tRNA formyltr 83.4 3.7 0.00013 40.0 8.6 82 45-127 14-96 (314)
15 3rfo_A Methionyl-tRNA formyltr 80.2 3.2 0.00011 40.5 6.9 67 45-112 16-83 (317)
16 3q0i_A Methionyl-tRNA formyltr 79.8 5.1 0.00017 39.1 8.2 81 44-125 18-99 (318)
17 1fmt_A Methionyl-tRNA FMet for 77.9 7 0.00024 37.9 8.5 80 45-125 15-95 (314)
18 2bln_A Protein YFBG; transfera 72.8 11 0.00038 36.3 8.5 78 45-126 12-90 (305)
19 3nav_A Tryptophan synthase alp 58.1 46 0.0016 31.5 9.4 162 40-231 79-245 (271)
20 3kwp_A Predicted methyltransfe 54.8 76 0.0026 30.3 10.5 71 44-118 76-146 (296)
21 3umf_A Adenylate kinase; rossm 50.6 7.1 0.00024 35.8 2.3 52 300-362 14-65 (217)
22 2ekc_A AQ_1548, tryptophan syn 45.7 1E+02 0.0034 28.6 9.5 180 41-260 77-258 (262)
23 1z7e_A Protein aRNA; rossmann 43.7 49 0.0017 34.5 7.7 79 45-127 12-91 (660)
24 1xpj_A Hypothetical protein; s 43.3 21 0.00071 29.2 3.9 25 43-69 27-51 (126)
25 1jy2_P Fibrinogen gamma-B chai 40.9 10 0.00036 27.2 1.3 36 147-187 12-47 (48)
26 3ek6_A Uridylate kinase; UMPK 38.2 60 0.0021 29.9 6.6 52 16-67 8-59 (243)
27 3h35_A Uncharacterized protein 38.0 14 0.00049 33.4 2.2 67 118-199 11-78 (185)
28 3vnd_A TSA, tryptophan synthas 37.5 1.5E+02 0.0052 27.8 9.4 160 40-231 77-243 (267)
29 2zos_A MPGP, mannosyl-3-phosph 35.3 19 0.00064 32.5 2.5 33 34-68 11-43 (249)
30 2rbk_A Putative uncharacterize 35.2 29 0.001 31.1 3.8 33 34-68 11-46 (261)
31 3cvo_A Methyltransferase-like 32.9 31 0.0011 31.4 3.5 63 65-127 95-161 (202)
32 3nwy_A Uridylate kinase; allos 32.5 83 0.0028 29.9 6.7 51 15-66 48-98 (281)
33 1vjr_A 4-nitrophenylphosphatas 31.5 30 0.001 30.9 3.2 49 34-91 26-76 (271)
34 4a7w_A Uridylate kinase; trans 30.6 95 0.0032 28.4 6.6 51 16-66 6-56 (240)
35 2pju_A Propionate catabolism o 29.8 40 0.0014 31.1 3.8 34 338-371 142-175 (225)
36 1rkq_A Hypothetical protein YI 29.0 41 0.0014 30.8 3.8 34 43-83 25-58 (282)
37 3pdw_A Uncharacterized hydrola 28.8 64 0.0022 28.7 5.0 51 34-92 15-66 (266)
38 3dao_A Putative phosphatse; st 28.5 40 0.0014 30.7 3.6 33 34-68 30-65 (283)
39 1xvi_A MPGP, YEDP, putative ma 28.4 26 0.0009 32.1 2.3 24 43-68 29-52 (275)
40 3hbm_A UDP-sugar hydrolase; PS 27.9 2E+02 0.0068 27.0 8.5 147 19-205 2-171 (282)
41 3r4c_A Hydrolase, haloacid deh 26.9 43 0.0015 29.8 3.5 33 34-68 21-56 (268)
42 1ybd_A Uridylate kinase; alpha 26.9 1.2E+02 0.0041 27.2 6.5 46 18-63 8-53 (239)
43 3kc2_A Uncharacterized protein 26.8 76 0.0026 30.9 5.4 79 1-99 1-80 (352)
44 3gve_A YFKN protein; alpha-bet 26.2 1.1E+02 0.0037 29.6 6.4 27 44-70 195-222 (341)
45 1u02_A Trehalose-6-phosphate p 26.0 35 0.0012 30.6 2.6 25 41-68 23-48 (239)
46 2obb_A Hypothetical protein; s 25.8 34 0.0012 29.3 2.4 43 42-92 26-68 (142)
47 1apy_A Aspartylglucosaminidase 24.5 2.6E+02 0.009 24.5 8.0 69 191-264 73-141 (162)
48 4hv4_A UDP-N-acetylmuramate--L 23.7 3.2E+02 0.011 27.4 9.6 14 39-52 359-372 (494)
49 1to3_A Putative aldolase YIHT; 23.4 89 0.003 29.9 5.1 63 4-68 5-74 (304)
50 2bw0_A 10-FTHFDH, 10-formyltet 23.3 2.7E+02 0.0091 26.8 8.6 45 45-96 34-79 (329)
51 2z08_A Universal stress protei 23.2 1.4E+02 0.0048 23.5 5.6 45 49-95 92-136 (137)
52 2jjx_A Uridylate kinase, UMP k 22.6 1.6E+02 0.0053 27.0 6.5 48 16-63 11-58 (255)
53 3jyf_A 2',3'-cyclic nucleotide 22.2 61 0.0021 31.4 3.7 26 44-69 189-215 (339)
54 2j5v_A Glutamate 5-kinase; pro 21.9 1E+02 0.0034 30.4 5.2 46 18-64 5-50 (367)
55 1wr8_A Phosphoglycolate phosph 21.7 62 0.0021 28.5 3.4 24 43-68 23-46 (231)
56 1z9d_A Uridylate kinase, UK, U 21.4 1.6E+02 0.0056 26.7 6.4 50 17-66 7-56 (252)
57 4h1s_A 5'-nucleotidase; hydrol 20.5 68 0.0023 32.7 3.8 28 41-68 171-199 (530)
58 2buf_A Acetylglutamate kinase; 20.3 1.5E+02 0.0052 27.9 6.0 63 15-96 24-86 (300)
59 1wek_A Hypothetical protein TT 20.1 1.4E+02 0.0047 27.2 5.5 65 175-239 20-97 (217)
60 3cpr_A Dihydrodipicolinate syn 20.1 2.2E+02 0.0075 26.9 7.1 55 26-88 24-79 (304)
No 1
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=100.00 E-value=1.3e-154 Score=1162.86 Aligned_cols=391 Identities=60% Similarity=0.985 Sum_probs=381.4
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhHHHHHHh
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSE 86 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g-~~~~~SL~~va~~L~~ 86 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++|||||||||||||+| +++++||+|||++|++
T Consensus 3 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~a~lpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~ 81 (398)
T 1vpe_A 3 MTIRDVDLKGKRVIMRVDFNVPVKD-GVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSE 81 (398)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCcCCccCHHHHHHHHHH
Confidence 4566679999999999999999985 8999999999999999999999999999999999998 6789999999999999
Q ss_pred hhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcc
Q 040813 87 LLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKF 166 (401)
Q Consensus 87 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~ 166 (401)
+||++|+|++||+|+++++++++|++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+||++|
T Consensus 82 lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~ 161 (398)
T 1vpe_A 82 LLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQF 161 (398)
T ss_dssp HHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGT
T ss_pred HHCCCceeCCCCCCHHHHHHHhcCCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 040813 167 LKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEED 246 (401)
Q Consensus 167 l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~ 246 (401)
+ |+|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|||++||+|++|++
T Consensus 162 l-ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d 240 (398)
T 1vpe_A 162 I-PSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED 240 (398)
T ss_dssp S-CEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred h-hhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChh
Confidence 8 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEe-CCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCccc
Q 040813 247 KLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMG 325 (401)
Q Consensus 247 ~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~-~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~G 325 (401)
.++.|++||++|+++|++|+||+|++|+++|++++++++++ .++||+|||++||||+|++.|+++|++|||||||||||
T Consensus 241 ~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmG 320 (398)
T 1vpe_A 241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG 320 (398)
T ss_dssp GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred hHHHHHHHHHHHHhcCCEEECCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCCEEEEECCcc
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 326 VFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 326 vfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
|||+++|+.||++++++++++++.++|||||||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 321 vFE~~~Fa~GT~~va~aia~~t~~~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 395 (398)
T 1vpe_A 321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRI 395 (398)
T ss_dssp CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCB
T ss_pred cccCchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCcCCccEEeCChHHHHHHHcCCCCcHHHHHHh
Confidence 999999999999999999998654579999999999999999999999999999999999999999999999975
No 2
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=100.00 E-value=1.6e-154 Score=1160.96 Aligned_cols=390 Identities=62% Similarity=1.015 Sum_probs=380.0
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhHHHHHHh
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSE 86 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g-~~~~~SL~~va~~L~~ 86 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+| +++++||+|||++|++
T Consensus 4 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~ 82 (394)
T 1php_A 4 KTIRDVDVRGKRVFCRVDFNVPMEQ-GAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGE 82 (394)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHH
Confidence 4556669999999999999999985 8999999999999999999999999999999999998 6789999999999999
Q ss_pred hhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcc
Q 040813 87 LLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKF 166 (401)
Q Consensus 87 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~ 166 (401)
+||++|+|++||+|+++++++++|++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+||++|
T Consensus 83 lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~ 162 (394)
T 1php_A 83 LLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHY 162 (394)
T ss_dssp HHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGT
T ss_pred HHCCCceECCCcCCHHHHHHHhcCCCCeEEEEcccCCCcchhhCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 040813 167 LKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEED 246 (401)
Q Consensus 167 l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~ 246 (401)
+ |+|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|||++||+|++|++
T Consensus 163 l-p~~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d 241 (394)
T 1php_A 163 L-PAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEED 241 (394)
T ss_dssp S-CEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGG
T ss_pred h-hhhhcHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCccccchh
Confidence 8 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCcccc
Q 040813 247 KLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGV 326 (401)
Q Consensus 247 ~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~Gv 326 (401)
.++.|++|+++|+++|++|+||+|++|+++|++++++++++.++||+|||++||||+|++.|+++|++||||||||||||
T Consensus 242 ~~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGv 321 (394)
T 1php_A 242 KIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGV 321 (394)
T ss_dssp GHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSC
T ss_pred hHHHHHHHHHHHHhcCCEEECCcchhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccC
Q 040813 327 FEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401 (401)
Q Consensus 327 fE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~~ 401 (401)
||+++|+.||++++++++++ .++|||||||||++|++++|+.|+||||||||||||||||||+||||++|+++
T Consensus 322 FE~~~Fa~GT~~va~aia~~--~~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 394 (394)
T 1php_A 322 FEMDAFAHGTKAIAEALAEA--LDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394 (394)
T ss_dssp TTSGGGCHHHHHHHHHHHHC--TTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred ccCchHHHHHHHHHHHHHhc--CCCEEEECChHHHHHHHHcCCCCCccEEeCChHHHHHHHcCCCcchHHHhhcC
Confidence 99999999999999999996 24699999999999999999999999999999999999999999999999864
No 3
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=100.00 E-value=7e-154 Score=1157.76 Aligned_cols=392 Identities=51% Similarity=0.886 Sum_probs=380.4
Q ss_pred cccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHH
Q 040813 6 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLS 85 (401)
Q Consensus 6 ~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~ 85 (401)
++++|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++|||||||||||||+|.++++||+|||++|+
T Consensus 6 ~~~ti~d~dl~gKrVlvRvD~NVP~~~~g~Itdd~RI~aalpTI~~ll~~GakVil~SHlGRP~g~~~~~SL~pva~~L~ 85 (403)
T 3q3v_A 6 DIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLA 85 (403)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCBCTTCCBSCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHH
T ss_pred cCCchhhhccCCCEEEEEeccCCCcCCCCcccChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCcccCHHHHHHHHH
Confidence 45666777999999999999999998548999999999999999999999999999999999998668999999999999
Q ss_pred hhhCCceeeccCCCC-HHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhh
Q 040813 86 ELLGVEVKMANDCIG-EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVA 164 (401)
Q Consensus 86 ~~L~~~V~f~~d~~g-~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~ 164 (401)
++||++|+|++||+| +++++ +++|++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+||+
T Consensus 86 ~lLg~~V~f~~d~~G~~~~~~-v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~Gi~ 164 (403)
T 3q3v_A 86 RLLDKEIVMAKDVIGEDAKTK-AMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAIT 164 (403)
T ss_dssp HHHTSCCEECSSSSSHHHHHH-HHHCCTTCEEECSCGGGSTTGGGTCHHHHHHHHHTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred HHHCCCeEecCCCCCcHHHHH-HhcCCCCcEEEEeecccccchhhcHHHHHHHHHhhCCEEEECcchhhhhcCcchhhHH
Confidence 999999999999999 99999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcc--ccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcc
Q 040813 165 KFLKPS--VAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSL 242 (401)
Q Consensus 165 ~~l~~~--~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl 242 (401)
+|+|++ |||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|+|++||+|+
T Consensus 165 ~~lp~~~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl 244 (403)
T 3q3v_A 165 KFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSL 244 (403)
T ss_dssp GGSCTTSEEECHHHHHHHHHHHHHTTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSC
T ss_pred HhCCcchhhccHHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccc
Confidence 998548 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeC
Q 040813 243 VEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNG 322 (401)
Q Consensus 243 ~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNG 322 (401)
+|++.++.|++|+++|+++|++|+||+|++|+++|+.+++++++++++||+|||++||||+|++.|+++|++||||||||
T Consensus 245 ~e~d~~~~a~~ll~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTIvWNG 324 (403)
T 3q3v_A 245 LEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNG 324 (403)
T ss_dssp CCGGGHHHHHHHHHHHHHTTCEEECCSEEEEESSSSTTSCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHTTCSEEEEES
T ss_pred cchhhHHHHHHHHHHHHHcCCEEECCceEEEeeccCCCCceEEEecccCCCCCEeeecChHHHHHHHHHHHhCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccC
Q 040813 323 PMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401 (401)
Q Consensus 323 P~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~~ 401 (401)
||||||+++|+.||++++++++++ ++|||+|||||++|++++|+.|+||||||||||||||||||+||||++|+++
T Consensus 325 P~GvFE~~~Fa~GT~~va~aia~~---~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 400 (403)
T 3q3v_A 325 PMGVFEIDKFSKGSIKMSHYISEG---HATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSK 400 (403)
T ss_dssp CSSCTTSGGGCHHHHHHHHHHHHS---SSEEEEESHHHHHHHHHTTCGGGSSEECCCHHHHHHHHTTCCCHHHHTTBC-
T ss_pred CCccccccchhHHHHHHHHHHHhc---CCEEEECCcHHHHHHHHcCCcCCccEEcCChHHHHHHHcCCCCcHHHHHhhh
Confidence 999999999999999999999987 4699999999999999999999999999999999999999999999999853
No 4
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=100.00 E-value=8.1e-154 Score=1154.54 Aligned_cols=388 Identities=52% Similarity=0.863 Sum_probs=378.9
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhh
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSEL 87 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~ 87 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++|||||||||||||+|+++++||+|||++|+++
T Consensus 2 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~SL~pva~~L~~l 80 (390)
T 1v6s_A 2 RTLLDLDPKGKRVLVRVDYNVPVQD-GKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH 80 (390)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred CChhhcCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 4667779999999999999999984 899999999999999999999999999999999999977899999999999999
Q ss_pred hCCceeeccCCCC-HHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcc
Q 040813 88 LGVEVKMANDCIG-EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKF 166 (401)
Q Consensus 88 L~~~V~f~~d~~g-~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~ 166 (401)
|| +|+|++||+| +++++++++|++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+||+++
T Consensus 81 Lg-~V~f~~d~~G~~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~ 159 (390)
T 1v6s_A 81 LP-EARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARL 159 (390)
T ss_dssp CT-TEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGT
T ss_pred hC-CceeccccCCcHHHHHHHhcCCCCeEEEEcccccccccccCCHHHHHHHHhhCCEEEEcCcccccccccchhhHhhh
Confidence 99 9999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 040813 167 LKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEED 246 (401)
Q Consensus 167 l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~ 246 (401)
+ |+|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|||++||+|++|++
T Consensus 160 l-p~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d 238 (390)
T 1v6s_A 160 L-PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED 238 (390)
T ss_dssp S-CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG
T ss_pred h-HHhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchh
Confidence 8 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCcccc
Q 040813 247 KLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGV 326 (401)
Q Consensus 247 ~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~Gv 326 (401)
.++.|++|+++|+++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++||||||||||||
T Consensus 239 ~~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGv 318 (390)
T 1v6s_A 239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGV 318 (390)
T ss_dssp GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSC
T ss_pred hHHHHHHHHHHHHHcCCEEECCcChhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 327 FEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 327 fE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
||+++|+.||+++++++++++ ++|||+|||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 319 FE~~~Fa~GT~~va~aia~~~--~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 390 (390)
T 1v6s_A 319 FEVPPFDEGTLAVGQAIAALE--GAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390)
T ss_dssp TTSTTTTHHHHHHHHHHHTCS--SCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred ccCchHHHHHHHHHHHHHhcC--CCEEEECChHHHHHHHHcCCccCceEEeCChHHHHHHHcCCCcchHHHhcC
Confidence 999999999999999999963 469999999999999999999999999999999999999999999999974
No 5
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=100.00 E-value=3.9e-153 Score=1155.87 Aligned_cols=391 Identities=49% Similarity=0.826 Sum_probs=379.2
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCC----------------
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV---------------- 71 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~---------------- 71 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++|||||||||||||+|.
T Consensus 3 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTI~~ll~~Gakvil~SHlGRPkg~~~~~~~~~~~~~~~~~ 81 (415)
T 16pk_A 3 KSINECDLKGKKVLIRVDFNVPVKN-GKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPG 81 (415)
T ss_dssp CBGGGSCCTTCEEEEEECCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCTT
T ss_pred CcccccCcCCCEEEEEeccCCcccC-CccCchHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCccccccccccccccccc
Confidence 4566779999999999999999984 89999999999999999999999999999999999984
Q ss_pred -CCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCc----HHHHHHHhhcCCEEe
Q 040813 72 -TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYV 146 (401)
Q Consensus 72 -~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~----~~f~~~LA~l~DvyV 146 (401)
++++||+|||++|+++||++|+|++||+|++++ |++|++|||+||||+|||+||++|+ ++|+++||+|||+||
T Consensus 82 ~~~~~SL~pva~~Ls~lLg~~V~f~~d~~G~~~~--v~~l~~G~VlLLEN~RF~~~E~~nd~~e~~~fa~~LA~l~DvyV 159 (415)
T 16pk_A 82 FQQKATLKPVAKRLSELLLRPVTFAPDCLNAADV--VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYI 159 (415)
T ss_dssp CCGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHH--HHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEE
T ss_pred CCcccCHHHHHHHHHHHhCCCCeeCCccCChHHH--hhcCCCCcEEEeccccCCcccccCCccccHHHHHHHHhhCCEEE
Confidence 689999999999999999999999999999998 9999999999999999999999999 999999999999999
Q ss_pred ecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHH
Q 040813 147 NDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGM 226 (401)
Q Consensus 147 NDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~m 226 (401)
|||||||||+||||+||++++|++|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+|
T Consensus 160 NDAFgtaHRahaS~~Gi~~~lp~~~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgm 239 (415)
T 16pk_A 160 SDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAM 239 (415)
T ss_dssp EECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTH
T ss_pred EcccccccccccchhhhhhhcccccccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHH
Confidence 99999999999999999999955999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHH
Q 040813 227 IFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIK 306 (401)
Q Consensus 227 a~tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~ 306 (401)
|||||+|||++||+|++|++.++.|++||++|+++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++
T Consensus 240 a~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~ 319 (415)
T 16pk_A 240 AYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIE 319 (415)
T ss_dssp HHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHH
T ss_pred HHHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEECCceeehhhcccCCCceEEeehhcCCCCCEEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhC-CCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHH
Q 040813 307 SFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLE 385 (401)
Q Consensus 307 ~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~-~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le 385 (401)
.|+++|++||||||||||||||+++|+.||++++++++++++ .+++||||||||++|++++|+.|+|||||||||||||
T Consensus 320 ~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~~a~sIvGGGDt~aAv~~~G~~d~~shiSTGGGA~Le 399 (415)
T 16pk_A 320 KYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLE 399 (415)
T ss_dssp HHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHH
T ss_pred HHHHHHHhCCEEEEECCcccccCchHHHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHcCCccCceEEeCChHHHHH
Confidence 999999999999999999999999999999999999999752 3679999999999999999999999999999999999
Q ss_pred hhcCCCCchhhccccC
Q 040813 386 LLEGKTLPGVLALDDA 401 (401)
Q Consensus 386 ~LeG~~LPgv~aL~~~ 401 (401)
|||||+||||++|+++
T Consensus 400 ~LeGk~LPgv~aL~~~ 415 (415)
T 16pk_A 400 LLEGKTLPGVTVLDDK 415 (415)
T ss_dssp HHTTCCCHHHHTSCBC
T ss_pred HHcCCCcchHHHhhcC
Confidence 9999999999999864
No 6
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=100.00 E-value=6.2e-153 Score=1155.64 Aligned_cols=391 Identities=53% Similarity=0.900 Sum_probs=380.4
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhHHHHHH
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLS 85 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g-~~~~~SL~~va~~L~ 85 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||| ||||||||||+| +++++||+|||++|+
T Consensus 6 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTIk~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~L~ 84 (415)
T 1qpg_A 6 LSVQDLDLKDKRVFIRVDFNVPLDG-KKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQ 84 (415)
T ss_dssp CBGGGCCCTTCEEEEECCCCCCBSS-SSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHHHH
Confidence 5667779999999999999999985 8999999999999999999999999 999999999998 678999999999999
Q ss_pred hhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCcccc----------CCcHH----HHHHHhhcCCEEeecccc
Q 040813 86 ELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE----------KNDPE----FAKKLASLADLYVNDAFG 151 (401)
Q Consensus 86 ~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~----------~~~~~----f~~~LA~l~DvyVNDAFg 151 (401)
++||++|+|++||+|+++++++++|++|||+||||+|||+||+ +|+++ |+++||+|||+|||||||
T Consensus 85 ~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~g~~~~~~~~~knd~~~~~~fa~~LA~l~DvyVNDAFg 164 (415)
T 1qpg_A 85 SLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFG 164 (415)
T ss_dssp HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEECCGG
T ss_pred HHHCCCceeCCCcCCHHHHHHHhcCCCCeEEEeccCccChhhccccccccchhccCHHHHHHHHHHHHhhCCEEEecchh
Confidence 9999999999999999999999999999999999999999999 89999 999999999999999999
Q ss_pred cccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHH
Q 040813 152 SAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFY 231 (401)
Q Consensus 152 ~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl 231 (401)
||||+||||+||++++ | |||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||
T Consensus 165 taHRahaS~~gi~~~l-p-~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl 242 (415)
T 1qpg_A 165 TAHRAHSSMVGFDLPQ-R-AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFK 242 (415)
T ss_dssp GTTSCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred hchhhcCcccchhhcc-c-cccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHH
Confidence 9999999999999998 6 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCc-cCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeE-EeCCCCCCCCcccccChHHHHHHH
Q 040813 232 KAQGHS-VGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKV-VPATAIPDGWMGLDVGPDAIKSFS 309 (401)
Q Consensus 232 ~a~G~~-iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~-~~~~~ip~~~~~~DIGp~Ti~~~~ 309 (401)
+|+|++ ||+|++|++.++.|++||++|+++|++|+||+|++|+++|+.++++++ ++.++||+|||++||||+|++.|+
T Consensus 243 ~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~ 322 (415)
T 1qpg_A 243 KVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322 (415)
T ss_dssp HHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHH
T ss_pred HHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEEECCcchhhhhccCCCCCeEEecchhcCCCCCeeeccCHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999988888 888999999999999999999999
Q ss_pred HHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcC
Q 040813 310 EALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEG 389 (401)
Q Consensus 310 ~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG 389 (401)
++|++||||||||||||||+++|+.||++++++++++++.++|||||||||++|++++|+.|+|||||||||||||||||
T Consensus 323 ~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LEG 402 (415)
T 1qpg_A 323 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEG 402 (415)
T ss_dssp HHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHHTS
T ss_pred HHHhhCCEEEEeCCccccccchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCCCCceEEeCChHHHHHHHcC
Confidence 99999999999999999999999999999999999986557899999999999999999999999999999999999999
Q ss_pred CCCchhhccccC
Q 040813 390 KTLPGVLALDDA 401 (401)
Q Consensus 390 ~~LPgv~aL~~~ 401 (401)
|+||||++|+++
T Consensus 403 k~LPgv~aL~~~ 414 (415)
T 1qpg_A 403 KELPGVAFLSEK 414 (415)
T ss_dssp CCCHHHHTSCBC
T ss_pred CCCchHHHhhcC
Confidence 999999999753
No 7
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Probab=100.00 E-value=1.1e-152 Score=1146.81 Aligned_cols=386 Identities=47% Similarity=0.791 Sum_probs=375.1
Q ss_pred CcccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCC-CC-CCCCCChhhHHH
Q 040813 5 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP-KG-VTPKYSLKPLVP 82 (401)
Q Consensus 5 ~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP-~g-~~~~~SL~~va~ 82 (401)
|++++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+|||||| +| +++++||+|||+
T Consensus 4 m~~~ti~d~dl~gKrVlvRvD~NVP~~~-g~Itdd~RI~a~lpTI~~ll~~gakVil~SHlGRP~kg~~~~~~SL~pva~ 82 (395)
T 4fey_A 4 MSFLTLKDVDLKDKKVLVRVDFNVPVKD-GKVTSKVRIEAAIPTIQYILDQGGAVILMSHLGRPTEGEYDSQFSLEPVAK 82 (395)
T ss_dssp CCSCBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHTHHHHHHHHHHTCEEEEECCCSCCCTTSCCGGGCSHHHHH
T ss_pred cccCchhhcCcCCCEEEEEeccCCCCcC-CcCCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCcCcccCHHHHHH
Confidence 4677778889999999999999999984 89999999999999999999999999999999999 66 678999999999
Q ss_pred HHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhh
Q 040813 83 RLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEG 162 (401)
Q Consensus 83 ~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vg 162 (401)
+|+++||++|+|++||+|+ + +|++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+|
T Consensus 83 ~L~~lLg~~V~f~~d~~~~-----v-~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~G 156 (395)
T 4fey_A 83 ALSEIINKPVKFAKDWLDG-----V-DVKAGEIVMCENVRFNSGEKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYG 156 (395)
T ss_dssp HHHHHHCSCEEEESSTTTC-----C-CCCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCTTTTH
T ss_pred HHHHHHCCCcEECcccccc-----c-CCCCCcEEEEeecccCchhhhcHHHHHHHHHhhCCEEEECcchhhhhhcccchh
Confidence 9999999999999999984 5 899999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcc
Q 040813 163 VAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSL 242 (401)
Q Consensus 163 i~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl 242 (401)
|++|+|++|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|+|++||+|+
T Consensus 157 i~~~lp~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl 236 (395)
T 4fey_A 157 VAKYIPVACAGILLTNEIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSL 236 (395)
T ss_dssp HHHHSSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCC
T ss_pred hhccCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCccc
Confidence 99998549999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeC
Q 040813 243 VEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNG 322 (401)
Q Consensus 243 ~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNG 322 (401)
+|++.++.|++|+++|+++|++|+||+|++|+++|+.+++++++++++||+|||++||||+|++.|+++|++||||||||
T Consensus 237 ~E~d~~~~a~~il~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNG 316 (395)
T 4fey_A 237 YEQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAELLKSANTILWNG 316 (395)
T ss_dssp CCGGGHHHHHHHHHHHHHTTCBCCCCSEEEEESSSSTTCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEEC
T ss_pred cchhhHHHHHHHHHHHHHcCCEEEccceEEEeccccCCCceEEEEcccCCCCCcceecChHHHHHHHHHHHhCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 323 PMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 323 P~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
||||||+++|++||++++++++++ ++|||+|||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 317 P~GvFE~~~Fa~GT~~va~aia~~---~a~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 391 (395)
T 4fey_A 317 PVGVFEFDNFAEGTKALSLAIAQS---HAFSVAGGGDTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKE 391 (395)
T ss_dssp CSSCTTSGGGCHHHHHHHHHHHHH---CSEEEEESHHHHHHHHHTTCSTTSSEEECCSHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHHhc---CCeEEECCcHHHHHHHHcCCcCCceEEcCChHHHHHHHcCCCchHHHHHHh
Confidence 999999999999999999999996 579999999999999999999999999999999999999999999999975
No 8
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=100.00 E-value=1e-152 Score=1154.63 Aligned_cols=392 Identities=50% Similarity=0.855 Sum_probs=379.6
Q ss_pred cccccccc-cCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhHHH
Q 040813 6 SVSVLKEA-DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVP 82 (401)
Q Consensus 6 ~i~~l~d~-d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g-~~~~~SL~~va~ 82 (401)
+.++|+|+ |++|||||||||||||+++ |+|+||+||++++|||+||+++||| ||||||||||+| +++++||+|||+
T Consensus 6 ~~~ti~d~~dl~gKrVlvRvD~NVP~~~-g~Itdd~RI~aalpTI~~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~ 84 (417)
T 3oz7_A 6 NKLSISDLKDIKNKKVLVRVDFNVPIEN-GIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVAE 84 (417)
T ss_dssp TCCBGGGCSCCTTCEEEEECCCCCCEET-TEESCCHHHHTTHHHHHHHHHHTCSEEEEECCCSCCTTSCCGGGCSHHHHH
T ss_pred cCCchhHhhccCCCEEEEEeccCCCccC-CcCCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHH
Confidence 44566777 8999999999999999984 8999999999999999999999999 999999999998 678999999999
Q ss_pred HHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCcccc---------------CCcHHHHHHHhhcCCEEee
Q 040813 83 RLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE---------------KNDPEFAKKLASLADLYVN 147 (401)
Q Consensus 83 ~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~---------------~~~~~f~~~LA~l~DvyVN 147 (401)
+|+++||++|+|++||+|+++++++++|++|||+||||+|||+||+ +|+++|+++||+|||+|||
T Consensus 85 ~L~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~eE~~~~~~~~~~~~k~~~~n~~~fa~~LA~l~DvyVN 164 (417)
T 3oz7_A 85 TLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFIN 164 (417)
T ss_dssp HHHHHHTSCCEEESCSSSHHHHHHHHHSCTTEEEEECCGGGSHHHHSEEECTTSCEEECCHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhCCCcEECCCCCCHHHHHHHhcCCCCcEEEEccccccccccccccccccccccCChhhhHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999999999999998 4578999999999999999
Q ss_pred cccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHH
Q 040813 148 DAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMI 227 (401)
Q Consensus 148 DAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma 227 (401)
||||||||+||||+||+ ++|+|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||
T Consensus 165 DAFgtaHRahaS~~Gi~--~~~~~aG~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma 242 (417)
T 3oz7_A 165 DAFGTAHRAHSSMVGVK--LNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMA 242 (417)
T ss_dssp CCGGGTTSCCHHHHCCC--CSCEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEETTHH
T ss_pred CcchhhhhccCcccccc--cccccccHHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEeccHHH
Confidence 99999999999999999 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEE-eCCCCCCCCcccccChHHH
Q 040813 228 FTFYKA-QGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVV-PATAIPDGWMGLDVGPDAI 305 (401)
Q Consensus 228 ~tFl~a-~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~-~~~~ip~~~~~~DIGp~Ti 305 (401)
||||+| +|++||+|++|++.++.|++|+++|+++|++|+||+|++|+++|+.+++++++ +.++||+|||++||||+|+
T Consensus 243 ~tFl~A~~G~~iG~Sl~e~d~~~~a~~il~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~ 322 (417)
T 3oz7_A 243 YTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSI 322 (417)
T ss_dssp HHHHHHHHCCCBTTSCCCTTTHHHHHHHHHHHHHTTCEEECCSEEEEESSSSTTSCEEEEESSSCBCTTCEEEEECHHHH
T ss_pred HHHHHHHcCCccCchhcCccChHHHHHHHHHHHHcCCEEECCceeEEeecccCCCCeEEecccccCCCCCeeeecCHHHH
Confidence 999999 89999999999999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred HHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHH
Q 040813 306 KSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLE 385 (401)
Q Consensus 306 ~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le 385 (401)
+.|+++|++||||||||||||||+++|+.||+++++++++++++++|||+|||||++|++++|+.|+|||||||||||||
T Consensus 323 ~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le 402 (417)
T 3oz7_A 323 ENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLE 402 (417)
T ss_dssp HHHHHHHHTCSEEEEESCSBCTTSSTTTHHHHHHHHHHHHHHHHTCEEEECSHHHHHHHHHTTCGGGSSEECSCSHHHHH
T ss_pred HHHHHHHHhCCEEEEECCCccccccchhHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCcCCccEEcCChHHHHH
Confidence 99999999999999999999999999999999999999998766889999999999999999999999999999999999
Q ss_pred hhcCCCCchhhcccc
Q 040813 386 LLEGKTLPGVLALDD 400 (401)
Q Consensus 386 ~LeG~~LPgv~aL~~ 400 (401)
|||||+||||++|++
T Consensus 403 ~LeGk~LPgv~aL~~ 417 (417)
T 3oz7_A 403 LLEGKELPGVLALSN 417 (417)
T ss_dssp HHTTCCCHHHHTSCC
T ss_pred HHcCCCCcceeeccC
Confidence 999999999999974
No 9
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...
Probab=100.00 E-value=1.4e-152 Score=1153.35 Aligned_cols=390 Identities=51% Similarity=0.888 Sum_probs=378.2
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCC-CC-CCCChhhHHHHH
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VT-PKYSLKPLVPRL 84 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g-~~-~~~SL~~va~~L 84 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||| ||||||||||+| ++ +++||+|||++|
T Consensus 6 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTIk~ll~~gak~Vil~SHlGRPkg~~~~~~~SL~pva~~L 84 (416)
T 2wzb_A 6 LTLDKLDVKGKRVVMRVDFNVPMKN-NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVEL 84 (416)
T ss_dssp CBGGGCCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCCHHHHCSHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCccccCHHHHHHHH
Confidence 5667779999999999999999984 8999999999999999999999999 999999999998 56 789999999999
Q ss_pred HhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCcccc-----------CCcHH----HHHHHhhcCCEEeecc
Q 040813 85 SELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KNDPE----FAKKLASLADLYVNDA 149 (401)
Q Consensus 85 ~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~-----------~~~~~----f~~~LA~l~DvyVNDA 149 (401)
+++||++|+|++||+|+++++++++|++|||+||||+|||+||+ +|+++ |+++||+|||+|||||
T Consensus 85 ~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~~~~~~~~~~~knd~e~~~~fa~~LA~l~DvyVNDA 164 (416)
T 2wzb_A 85 KSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDA 164 (416)
T ss_dssp HHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTCC----------CHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHCCCCeeCCccCCHHHHHHHhcCCCCcEEEecccccchhhcccccccccccccCCHHHHHHHHHHHHhhCCEEEecc
Confidence 99999999999999999999999999999999999999999999 89999 9999999999999999
Q ss_pred cccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHH
Q 040813 150 FGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFT 229 (401)
Q Consensus 150 Fg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~t 229 (401)
||||||+||||+||++++ | |||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||
T Consensus 165 FgtaHRahaS~~gi~~~l-p-~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~T 242 (416)
T 2wzb_A 165 FGTAHRAHSSMVGVNLPQ-K-AGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFT 242 (416)
T ss_dssp GGGTTCCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHH
T ss_pred cccchhhccchhhhhhcc-h-hhhHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHH
Confidence 999999999999999998 6 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCc-cCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeE-EeCCCCCCCCcccccChHHHHH
Q 040813 230 FYKAQGHS-VGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKV-VPATAIPDGWMGLDVGPDAIKS 307 (401)
Q Consensus 230 Fl~a~G~~-iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~-~~~~~ip~~~~~~DIGp~Ti~~ 307 (401)
||+|+|++ ||+|++|++.++.|++||++|+++|++|+||+|++|+++|+.++++++ ++.++||+|||++||||+|++.
T Consensus 243 Fl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~ 322 (416)
T 2wzb_A 243 FLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKK 322 (416)
T ss_dssp HHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEEECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHH
T ss_pred HHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEEECCcchhhhhccCCCCCeEEecchhcCCCCCeeeecCHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999888 8889999999999999999999
Q ss_pred HHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhh
Q 040813 308 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELL 387 (401)
Q Consensus 308 ~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~L 387 (401)
|+++|++||||||||||||||+++|+.||++++++++++++.++|||||||||++|++++|+.|+|||||||||||||||
T Consensus 323 ~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~L 402 (416)
T 2wzb_A 323 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELL 402 (416)
T ss_dssp HHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESTTHHHHHHHTTCTTSSSEEESCSHHHHHHH
T ss_pred HHHHHhhCCEEEEECCCcccccchHHHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCCCCceEEeCchHHHHHHH
Confidence 99999999999999999999999999999999999999875578999999999999999999999999999999999999
Q ss_pred cCCCCchhhcccc
Q 040813 388 EGKTLPGVLALDD 400 (401)
Q Consensus 388 eG~~LPgv~aL~~ 400 (401)
|||+||||++|++
T Consensus 403 EGk~LPgv~aL~~ 415 (416)
T 2wzb_A 403 EGKVLPGVDALSN 415 (416)
T ss_dssp HTCCCHHHHTSCB
T ss_pred cCCCccHHHHHhc
Confidence 9999999999986
No 10
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-150 Score=1129.22 Aligned_cols=377 Identities=47% Similarity=0.773 Sum_probs=365.5
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCC-CC-CCCCCChhhHHHHHH
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP-KG-VTPKYSLKPLVPRLS 85 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP-~g-~~~~~SL~~va~~L~ 85 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+|||||| +| +++++||+|||++|+
T Consensus 4 ~ti~d~dl~gKrVlvRvD~NVP~~~-g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~ 82 (387)
T 1zmr_A 4 IKMTDLDLAGKRVFIRADLNVPVKD-GKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLK 82 (387)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHH
Confidence 4556669999999999999999984 89999999999999999999999999999999999 77 579999999999999
Q ss_pred hhhCCceeeccCCC-CHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhh
Q 040813 86 ELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVA 164 (401)
Q Consensus 86 ~~L~~~V~f~~d~~-g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~ 164 (401)
++||++|+|++||+ | ++ |++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+||+
T Consensus 83 ~lLg~~V~f~~d~~~G------v~-l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~ 155 (387)
T 1zmr_A 83 DKLSNPVRLVKDYLDG------VD-VAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIG 155 (387)
T ss_dssp HHCSSCEEEESCCTTC------CC-CCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCCCCCCHH
T ss_pred HHhCCCCEECcccccC------cc-CCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhh
Confidence 99999999999999 8 78 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccc
Q 040813 165 KFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVE 244 (401)
Q Consensus 165 ~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e 244 (401)
+++|++|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|+|++||+|++|
T Consensus 156 ~~lp~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E 235 (387)
T 1zmr_A 156 KFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYE 235 (387)
T ss_dssp HHSSEEEECHHHHHHHHHHHHHHSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCC
T ss_pred hhCchhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCCCccccc
Confidence 99855999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCcc
Q 040813 245 EDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPM 324 (401)
Q Consensus 245 ~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~ 324 (401)
++.++.|++|+++ ++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++||||||||||
T Consensus 236 ~d~~~~a~~ll~~-----~~i~lPvD~vva~~f~~~~~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPm 310 (387)
T 1zmr_A 236 ADLVDEAKRLLTT-----CNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPV 310 (387)
T ss_dssp GGGHHHHHHHHTT-----SCCCCCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCS
T ss_pred hhhHHHHHHHHHh-----CCccCCccceeeeccCCCCceEEeehhhCCCCCEEeecCHHHHHHHHHHHhhCCEEEEECCc
Confidence 9999999999977 78999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 325 GVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 325 GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
||||+++|+.||++++++++++ ++|||+|||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 311 GvFE~~~Fa~GT~~va~aia~~---~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 383 (387)
T 1zmr_A 311 GVFEFPNFRKGTEIVANAIADS---EAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383 (387)
T ss_dssp BCTTSGGGCHHHHHHHHHHHHS---SSEEEECSHHHHHHHHHHTCGGGSSEECCCTHHHHHHHTTCCCHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHhc---CCeEEECCHHHHHHHHHcCCccCceEEeCChHHHHHHHcCCCCchHHHHHh
Confidence 9999999999999999999996 359999999999999999999999999999999999999999999999964
No 11
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-148 Score=1121.77 Aligned_cols=379 Identities=35% Similarity=0.590 Sum_probs=367.0
Q ss_pred ccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHh
Q 040813 7 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 7 i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~ 86 (401)
+++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||||||||| |.++++||+|||++|++
T Consensus 1 ~~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~a~lpTI~~ll~~gakVvl~SHlGRP-G~~~~~SL~pva~~L~~ 78 (410)
T 2cun_A 1 MFRLEDFNFHNKTVFLRVDLNSPMKD-GKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKP-YSEDYTTTEEHARVLSE 78 (410)
T ss_dssp CCBGGGSCCTTCEEEEECCCCCCEET-TEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCT-TCTTCCCSHHHHHHHHH
T ss_pred CCchhhcCCCCCEEEEEecCCCcccC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCCCC-CCCCCcCHHHHHHHHHH
Confidence 35778889999999999999999974 89999999999999999999999999999999999 76789999999999999
Q ss_pred hhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcH-------HHHHHHhhcCCEEeecccccccccccc
Q 040813 87 LLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDP-------EFAKKLASLADLYVNDAFGSAHRAHAS 159 (401)
Q Consensus 87 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~-------~f~~~LA~l~DvyVNDAFg~aHR~haS 159 (401)
+||++|+|++||+|++++++|++|++|||+||||+|||+||++|++ +|+++||+|||+|||||||||||+|||
T Consensus 79 lLg~~V~f~~d~~G~~a~~~i~~l~~G~VlLLEN~RF~~eE~~nd~~e~~a~~~fa~~LA~l~DvyVNDAFgtaHRahaS 158 (410)
T 2cun_A 79 LLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPS 158 (410)
T ss_dssp HHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCHH
T ss_pred HHCCCCeeCCCcCCHHHHHHHhcCCCCeEEEEcccccccccccCCchhhhhHHHHHHHHHhhCCEEEecccccccccCCc
Confidence 9999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred hhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHh--cCeEEEchHHHHHHHHHcCCc
Q 040813 160 TEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEK--VDILLLGGGMIFTFYKAQGHS 237 (401)
Q Consensus 160 ~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~k--vD~lliGG~ma~tFl~a~G~~ 237 (401)
|+||++++ |+|||+||||||++|++++++|+|||++|+|||||||||++|+||++| ||+|||||+||||||+|+|++
T Consensus 159 ~~Gi~~~l-ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~k~~vD~liiGGgma~tFl~A~G~~ 237 (410)
T 2cun_A 159 LVGFARIK-PMIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFD 237 (410)
T ss_dssp HHTTTTTS-CEEECHHHHHHHHHHHHHHTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCC
T ss_pred eechhhhh-hhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHhcccCCCEEEEChHHHHHHHHHcCCC
Confidence 99999998 789999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCCc---cccc----CchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCC-----CCCCCcccccChHHH
Q 040813 238 VGSS---LVEE----DKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATA-----IPDGWMGLDVGPDAI 305 (401)
Q Consensus 238 iG~s---l~e~----~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~-----ip~~~~~~DIGp~Ti 305 (401)
||+| ++|+ +.++.|++||+++ |++|+||+|++|+++ +++++++.++ || |||++||||+|+
T Consensus 238 iG~S~~~l~E~~g~~d~~~~a~~ll~ka---g~~i~lPvD~vva~~----a~~~~~~~~~~~~~~ip-~~m~lDiGp~T~ 309 (410)
T 2cun_A 238 LGRKNVEFMKKKGLLDYVKHAEEILDEF---YPYIRTPVDFAVDYK----GERVEIDLLSENRGLLH-QYQIMDIGKRTA 309 (410)
T ss_dssp CCHHHHHHHHTTTGGGGHHHHHHHHHHH---GGGEECCSEEEEEET----TEEEEEESSSGGGGGGG-TSCEEEECHHHH
T ss_pred cCcchhhhhhcccchhhHHHHHHHHHhc---cCeEeCCceeEEecC----CCeEEEecccccccCCC-CCeeeeeCHHHH
Confidence 9999 9999 9999999999998 889999999999875 5677888888 99 999999999999
Q ss_pred HHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHH
Q 040813 306 KSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLE 385 (401)
Q Consensus 306 ~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le 385 (401)
+.|+++|++||||||||||||||+++|+.||++++++++++ ++|||||||||++|++++|+ |+|||||||||||||
T Consensus 310 ~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~---~~~sivGGGDt~aav~~~g~-d~~shiSTGGGA~Le 385 (410)
T 2cun_A 310 EKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADS---PAFSVLGGGHSIASIQKYGI-TGITHISTGGGAMLS 385 (410)
T ss_dssp HHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHS---SSEEEEECGGGGGGGGGSCC-CCCSEECSCSHHHHH
T ss_pred HHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhc---CCeEEECChHHHHHHHHhCC-CCcEEEcCChHHHHH
Confidence 99999999999999999999999999999999999999996 35999999999999999999 999999999999999
Q ss_pred hhcCCCCchhhcccc
Q 040813 386 LLEGKTLPGVLALDD 400 (401)
Q Consensus 386 ~LeG~~LPgv~aL~~ 400 (401)
|||||+||||+||++
T Consensus 386 ~LeGk~LPgv~aL~~ 400 (410)
T 2cun_A 386 FFAGEELPVLRALQI 400 (410)
T ss_dssp HHTTCCCHHHHHHHH
T ss_pred HHcCCCCcHHHHHHH
Confidence 999999999999964
No 12
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=100.00 E-value=1.4e-124 Score=949.18 Aligned_cols=326 Identities=53% Similarity=0.900 Sum_probs=319.3
Q ss_pred CCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCcccc----------CCcHH----HHHHH
Q 040813 73 PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE----------KNDPE----FAKKL 138 (401)
Q Consensus 73 ~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~----------~~~~~----f~~~L 138 (401)
+++||+|||++|+++||++|+|++||+|+++++++++|++|||+||||+|||+||+ +|+++ |+++|
T Consensus 2 ~~~SL~pva~~L~~lLg~~V~f~~d~vG~~~~~~v~~l~~G~VlLLEN~RF~~~E~g~~~~~~~~~knd~e~~~~fa~~L 81 (416)
T 1fw8_A 2 SKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHEL 81 (416)
T ss_dssp CTTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHCCCCEeCCCCCCHHHHHHHHcCCCCeEEEEcccccccccccccccccchhccCHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999 89999 99999
Q ss_pred hhcCCEEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcC
Q 040813 139 ASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVD 218 (401)
Q Consensus 139 A~l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD 218 (401)
|+|||+|||||||||||+||||+||++++ | |||+||||||++|++++++|+|||++|+|||||||||++|+||++|||
T Consensus 82 A~l~DvyVNDAFgtAHRahaS~~Gi~~~l-p-~aG~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD 159 (416)
T 1fw8_A 82 SSLADVYINDAFGTAHRAHSSMVGFDLPQ-R-AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVD 159 (416)
T ss_dssp HTTCSEEEECCGGGTTSCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHHSCCSSEEEEEECSCSTTTHHHHHHHHTTCS
T ss_pred HhhCCEEEeccccccchhcCchhhhhhhh-c-cccHHHHHHHHHHHHHHcCCCCCeEEEEcCcchhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999998 6 999999999999999999999999999999999999999999999999
Q ss_pred eEEEchHHHHHHHHHcCCc-cCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeE-EeCCCCCCCCc
Q 040813 219 ILLLGGGMIFTFYKAQGHS-VGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKV-VPATAIPDGWM 296 (401)
Q Consensus 219 ~lliGG~ma~tFl~a~G~~-iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~-~~~~~ip~~~~ 296 (401)
+|||||+||||||+|+|++ ||+|++|++.++.|++||++|+++|++|+||+|++|+++|+.++++++ ++.++||+|||
T Consensus 160 ~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m 239 (416)
T 1fw8_A 160 SIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQ 239 (416)
T ss_dssp EEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTCCEEEEETTTCCCTTCE
T ss_pred eeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHhcCCEEECCceEEEeeccCCCCCeEEecchhcCCCCCE
Confidence 9999999999999999999 999999999999999999999999999999999999999999999888 88899999999
Q ss_pred ccccChHHHHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEE
Q 040813 297 GLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHI 376 (401)
Q Consensus 297 ~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shv 376 (401)
++||||+|++.|+++|++||||||||||||||+++|+.||++++++++++++.++|||+|||||++|++++|+.|+||||
T Consensus 240 ~lDIGp~T~~~~~~~i~~akTIvWNGPmGVFE~~~Fa~GT~~va~aia~~~~~~a~sIvGGGDt~aav~~~G~~d~~shi 319 (416)
T 1fw8_A 240 GLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHV 319 (416)
T ss_dssp EEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCGGGSSEE
T ss_pred EEecCHHHHHHHHHHHhhCCEEEEECCCccccCchHHHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCCCCccee
Confidence 99999999999999999999999999999999999999999999999997655789999999999999999999999999
Q ss_pred ecchhhHHHhhcCCCCchhhcccc
Q 040813 377 STGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 377 STGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
||||||||||||||+||||++|++
T Consensus 320 STGGGA~LE~LEGk~LPgV~aL~~ 343 (416)
T 1fw8_A 320 STGGGASLELLEGKELPGVAFLSE 343 (416)
T ss_dssp CSCSHHHHHHHTTCCCHHHHTSCS
T ss_pred ccccceehHhhcCCCChHHHHHHh
Confidence 999999999999999999999975
No 13
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=99.84 E-value=1.3e-21 Score=198.19 Aligned_cols=64 Identities=55% Similarity=0.924 Sum_probs=59.7
Q ss_pred ccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCC
Q 040813 7 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV 71 (401)
Q Consensus 7 i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~ 71 (401)
.++|+|+|++|||||+|||||||+++ |+|+|++||++++||||||+++||| |||+||||||+|.
T Consensus 350 k~TIdD~d~~gk~vl~RvD~NvP~~~-g~i~d~~Ri~~~~pti~~l~~~gak~vvl~sH~grp~g~ 414 (416)
T 1fw8_A 350 KLSVQDLDLKDKRVFIRVDFNVPLDG-KKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGE 414 (416)
T ss_dssp SCBGGGSCCTTCEEEEECCCCCCBSS-SSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSS
T ss_pred cccccccccccccceeccccccCccC-CcccchHHHHHHhHHHHHHHHCCCceEEEeccCCCCCCC
Confidence 46788889999999999999999984 8999999999999999999999997 9999999999874
No 14
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=83.36 E-value=3.7 Score=39.98 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 040813 45 AVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRF 123 (401)
Q Consensus 45 ~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf 123 (401)
++|+++.|+++|.. +.+++|-.||.|...+..-.|+.++- +..|.||.-..+.-.+++.+.++++++-=+++.-.-|+
T Consensus 14 a~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A-~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i 92 (314)
T 3tqq_A 14 AVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIA-RQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLI 92 (314)
T ss_dssp GHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHH-HHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHH-HHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcCcccc
Confidence 67999999999988 56788889998743334444664444 44688875444444556666677666655555555555
Q ss_pred Cccc
Q 040813 124 HKEE 127 (401)
Q Consensus 124 ~~eE 127 (401)
.+.+
T Consensus 93 lp~~ 96 (314)
T 3tqq_A 93 LPKK 96 (314)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 5443
No 15
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=80.18 E-value=3.2 Score=40.46 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCC
Q 040813 45 AVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPE 112 (401)
Q Consensus 45 ~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~ 112 (401)
++|+++.|+++|.. +.+++|-.||.|...++.-.|+.++- +..|.||.-..+.-.++..+.++++++
T Consensus 16 a~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A-~~~gIpv~~~~~~~~~~~~~~l~~~~~ 83 (317)
T 3rfo_A 16 SVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEA-EKHGIPVLQPLRIREKDEYEKVLALEP 83 (317)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHH-HHTTCCEECCSCTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHH-HHcCCCEEccccCCCHHHHHHHHhcCC
Confidence 67999999999988 55788888887743444445665544 445888764434334444444444443
No 16
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=79.80 E-value=5.1 Score=39.06 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 040813 44 AAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVR 122 (401)
Q Consensus 44 ~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~R 122 (401)
=++|+++.|+++|.. +.++|+-.||.|...+..-.|+.+ +.+..|.||.-..+.-.+++.+.++++++-=+++.-.-|
T Consensus 18 fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~-~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 18 FAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKT-LALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHH-HHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHH-HHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeCccc
Confidence 367999999999998 557888899987433344446644 444468887543343344555556655554344434444
Q ss_pred CCc
Q 040813 123 FHK 125 (401)
Q Consensus 123 f~~ 125 (401)
+.+
T Consensus 97 ilp 99 (318)
T 3q0i_A 97 LLP 99 (318)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 17
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=77.85 E-value=7 Score=37.93 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 040813 45 AVPTIKYLMGHGAKV-ILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRF 123 (401)
Q Consensus 45 ~lpTI~~L~~~gakv-vl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf 123 (401)
+.|+++.|+++|..| .++|+-.||.|...++.-.|+.++- +..|.||.-..+.-.++..+.++++++-=+++.---|+
T Consensus 15 a~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A-~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 93 (314)
T 1fmt_A 15 AARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLA-EEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLI 93 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHH-HHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHH-HHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEeecccc
Confidence 579999999999884 5788888887743444445665544 44588875333333344445555554433333333344
Q ss_pred Cc
Q 040813 124 HK 125 (401)
Q Consensus 124 ~~ 125 (401)
.+
T Consensus 94 lp 95 (314)
T 1fmt_A 94 LP 95 (314)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 18
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=72.79 E-value=11 Score=36.28 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 040813 45 AVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRF 123 (401)
Q Consensus 45 ~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf 123 (401)
+.++++.|+++|.. +.++|+-.||.| +..-.|+.++- +..|.||...++.-.++..+.++++++-=+++.-.-|+
T Consensus 12 a~~~L~~L~~~~~~i~~Vvt~~d~~~g---~~~~~~v~~~A-~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 87 (305)
T 2bln_A 12 GCLGIEALLAAGYEISAIFTHTDNPGE---KAFYGSVARLA-AERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHL 87 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCC---------CCCCHHHHH-HHHTCCEECCSCCCSHHHHHHHHHTCCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCCCC---CcCccHHHHHH-HHcCCCEECCCcCCcHHHHHHHHhcCCCEEEEeccccc
Confidence 57899999999998 567888777766 22333554433 44588988665544455555566655543343344454
Q ss_pred Ccc
Q 040813 124 HKE 126 (401)
Q Consensus 124 ~~e 126 (401)
.+.
T Consensus 88 lp~ 90 (305)
T 2bln_A 88 IYD 90 (305)
T ss_dssp CCH
T ss_pred cCH
Confidence 443
No 19
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=58.08 E-value=46 Score=31.55 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCC-CC-c-
Q 040813 40 NRVRAAVPTIKYLMGH--GAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIP-EG-G- 114 (401)
Q Consensus 40 ~RI~~~lpTI~~L~~~--gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~-~G-~- 114 (401)
.+++..+..++.+.++ ...+|+|+.+. | -..+.++.+++.+.+. |.+-..++|.--++..+..+.++ .| +
T Consensus 79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n-~---v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee~~~~~~~~~~~gl~~ 153 (271)
T 3nav_A 79 TTPDICFELIAQIRARNPETPIGLLMYAN-L---VYARGIDDFYQRCQKA-GVDSVLIADVPTNESQPFVAAAEKFGIQP 153 (271)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEEEECHH-H---HHHTCHHHHHHHHHHH-TCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCc-H---HHHHhHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHHcCCeE
Confidence 4455778888888875 45689997654 2 1235678888888775 77776677775444444443332 23 2
Q ss_pred EEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCe
Q 040813 115 VLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPF 194 (401)
Q Consensus 115 vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~ 194 (401)
|.|. ... ..++..+.+++.+.=||- + -+...++|...-+ ..-++.-++.+.+. .+.|.
T Consensus 154 I~lv------ap~--t~~eri~~i~~~~~gfiY----~--vs~~GvTG~~~~~-----~~~~~~~v~~vr~~---~~~Pv 211 (271)
T 3nav_A 154 IFIA------PPT--ASDETLRAVAQLGKGYTY----L--LSRAGVTGAETKA-----NMPVHALLERLQQF---DAPPA 211 (271)
T ss_dssp EEEE------CTT--CCHHHHHHHHHHCCSCEE----E--CCCC--------C-----CHHHHHHHHHHHHT---TCCCE
T ss_pred EEEE------CCC--CCHHHHHHHHHHCCCeEE----E--EeccCCCCcccCC-----chhHHHHHHHHHHh---cCCCE
Confidence 3333 111 234677888888876651 0 1123344443211 11233444444443 35673
Q ss_pred EEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHH
Q 040813 195 AAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFY 231 (401)
Q Consensus 195 vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl 231 (401)
+ + |--|++.=++-+.+...+|.+++|.++-..+-
T Consensus 212 ~-v--GfGIst~e~~~~~~~~gADgvIVGSAiv~~i~ 245 (271)
T 3nav_A 212 L-L--GFGISEPAQVKQAIEAGAAGAISGSAVVKIIE 245 (271)
T ss_dssp E-E--CSSCCSHHHHHHHHHTTCSEEEESHHHHHHHH
T ss_pred E-E--ECCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 3 3 44477777776567778999999999988764
No 20
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=54.81 E-value=76 Score=30.25 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEE
Q 040813 44 AAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118 (401)
Q Consensus 44 ~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLL 118 (401)
+..+.|-..+.+|-+|+++|--|-|.=++ .-..+++.+.+. |.+|..++-.-.-.+--+...+...++.++
T Consensus 76 ~~~~~li~~l~~G~~Va~lsdaGdP~i~~---~g~~lv~~~~~~-gi~v~viPGiSA~~aA~a~~Glp~~~f~f~ 146 (296)
T 3kwp_A 76 ERIPQLIAKLKQGMQIAQVSDAGMPSISD---PGHELVNACIDA-HIPVVPLPGANAGLTALIASGLAPQPFYFY 146 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSBCTTSSH---HHHHHHHHHHHT-TCCEEECCCCCHHHHHHHHHSSCCSSEEEE
T ss_pred hHhHHHHHHHhcCceEEEeccCCCCCCCC---CchHHHHHHHHc-CCCeeeCCCcccchHHHHhccCCCCceeEE
Confidence 44556666667888999999999873121 112233334332 778888887754444444556666555543
No 21
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.64 E-value=7.1 Score=35.79 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=28.6
Q ss_pred cChHHHHHHHHHhccCCeEEEeCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHH
Q 040813 300 VGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVA 362 (401)
Q Consensus 300 IGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~ 362 (401)
+-|+......+.+++++.||.-||.|. -+|| .++.+++.-. +..+--||-+-
T Consensus 14 ~~p~~~~~~~~~~~k~kiI~llGpPGs------GKgT--qa~~L~~~~g---~~hIstGdllR 65 (217)
T 3umf_A 14 LVPRGSHMTDQKLAKAKVIFVLGGPGS------GKGT--QCEKLVQKFH---FNHLSSGDLLR 65 (217)
T ss_dssp ----------CCTTSCEEEEEECCTTC------CHHH--HHHHHHHHHC---CEEECHHHHHH
T ss_pred cCCCCccccchhccCCcEEEEECCCCC------CHHH--HHHHHHHHHC---CceEcHHHHHH
Confidence 345566666778899999999999997 4555 4667766543 44445555443
No 22
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=45.68 E-value=1e+02 Score=28.60 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEE
Q 040813 41 RVRAAVPTIKYLMGH--GAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118 (401)
Q Consensus 41 RI~~~lpTI~~L~~~--gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLL 118 (401)
+++..+..++.+.++ +..+++|+-+. | -..+.++..++.+.+. |.+-..++|.-.++..+.++.++.-.+
T Consensus 77 ~~~~~~~~v~~ir~~~~~~Pi~~m~y~n-~---v~~~g~~~f~~~~~~a-G~dgvii~dl~~ee~~~~~~~~~~~gl--- 148 (262)
T 2ekc_A 77 RFEDVLELSETLRKEFPDIPFLLMTYYN-P---IFRIGLEKFCRLSREK-GIDGFIVPDLPPEEAEELKAVMKKYVL--- 148 (262)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEECCHH-H---HHHHCHHHHHHHHHHT-TCCEEECTTCCHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEecCc-H---HHHhhHHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHHHHHcCC---
Confidence 445567778888776 56788874433 1 1234556666666654 777555566655555555544432221
Q ss_pred ecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEe
Q 040813 119 ENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIV 198 (401)
Q Consensus 119 EN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIl 198 (401)
+.+.+... ...++..+.++..++-|+ -|-+.+.++|... + ..+.-+...++.+.+.. +-| +++=
T Consensus 149 ~~i~l~~p--~t~~~rl~~ia~~a~gfi------y~vs~~g~TG~~~---~-~~~~~~~~~v~~vr~~~---~~p-v~vG 212 (262)
T 2ekc_A 149 SFVPLGAP--TSTRKRIKLICEAADEMT------YFVSVTGTTGARE---K-LPYERIKKKVEEYRELC---DKP-VVVG 212 (262)
T ss_dssp EECCEECT--TCCHHHHHHHHHHCSSCE------EEESSCC-------------CHHHHHHHHHHHHHC---CSC-EEEE
T ss_pred cEEEEeCC--CCCHHHHHHHHHhCCCCE------EEEecCCccCCCC---C-cCcccHHHHHHHHHhhc---CCC-EEEe
Confidence 11222221 134456777777765332 2223334455432 1 11122344555555543 456 5554
Q ss_pred cCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhh
Q 040813 199 GGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKS 260 (401)
Q Consensus 199 GGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~ 260 (401)
+| +++.=.+-+ +..-+|.+++|.++-..+- ++..+.++++++..++
T Consensus 213 ~G--I~t~e~~~~-~~~gADgvIVGSai~~~~~-------------~~~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 213 FG--VSKKEHARE-IGSFADGVVVGSALVKLAG-------------QKKIEDLGNLVKELKE 258 (262)
T ss_dssp SS--CCSHHHHHH-HHTTSSEEEECHHHHHHHH-------------TTCHHHHHHHHHHHHH
T ss_pred CC--CCCHHHHHH-HHcCCCEEEECHHHHhhhh-------------hhhHHHHHHHHHHHHH
Confidence 44 555555554 6667999999999877651 1235566776666543
No 23
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=43.66 E-value=49 Score=34.47 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 040813 45 AVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRF 123 (401)
Q Consensus 45 ~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf 123 (401)
+.++++.|+++++. +.++|+-.+|.| +..-.|+.++- +..|.||...+..-.++..+.++++++-=|++.--.|+
T Consensus 12 ~~~~l~~l~~~~~~i~~v~t~~~~~~~---~~~~~~~~~~a-~~~~ip~~~~~~~~~~~~~~~l~~~~~d~iv~~~~~~i 87 (660)
T 1z7e_A 12 GCLGIEALLAAGYEISAIFTHTDNPGE---KAFYGSVARLA-AERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHL 87 (660)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCC-----------CCHHHHH-HHHTCCEECCSCTTSHHHHHHHHHHCCSEEEEESCCSC
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCcc---CcCccHHHHHH-HHcCCCEeccCCCCcHHHHHHHHhcCCCEEEEcCcccc
Confidence 47889999999998 567787777755 33333554433 44599998776665667778888887755555556677
Q ss_pred Cccc
Q 040813 124 HKEE 127 (401)
Q Consensus 124 ~~eE 127 (401)
.+.+
T Consensus 88 l~~~ 91 (660)
T 1z7e_A 88 IYDE 91 (660)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 7765
No 24
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=43.33 E-value=21 Score=29.18 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCC
Q 040813 43 RAAVPTIKYLMGHGAKVILSSHLGRPK 69 (401)
Q Consensus 43 ~~~lpTI~~L~~~gakvvl~SHlGRP~ 69 (401)
.....+|+.|.++|.++++.| |||.
T Consensus 27 ~~~~~~l~~l~~~Gi~~~iaT--GR~~ 51 (126)
T 1xpj_A 27 LDVIEQLREYHQLGFEIVIST--ARNM 51 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--CTTT
T ss_pred HHHHHHHHHHHhCCCeEEEEe--CCCh
Confidence 457788999999999999999 8874
No 25
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=40.88 E-value=10 Score=27.17 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=27.4
Q ss_pred ecccccccccccchhhhhcccCccccchhHHHHHHHHHhhh
Q 040813 147 NDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAV 187 (401)
Q Consensus 147 NDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~ 187 (401)
||.||. --+.|.||+.|+ ..|. .-+.|+|+.|+.++
T Consensus 12 d~rFGs---YCPTTCGiadfL-~~Yq-~~vd~dL~~lE~~L 47 (48)
T 1jy2_P 12 DERFGS---YCPTTCGIADFL-NNYQ-TSVDKDLRTLEGIL 47 (48)
T ss_dssp BTTTBC---EEECHHHHHHHH-HHHH-HHHHHHHHHHHHHH
T ss_pred cccccC---cCCccccHHHHh-cccc-cchhhHHHHHHHHh
Confidence 788884 468899999998 3443 44678999998876
No 26
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=38.16 E-value=60 Score=29.87 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCC
Q 040813 16 KGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGR 67 (401)
Q Consensus 16 ~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGR 67 (401)
+-|||+|.+==++=.++++.-+|..+|++....|..|.++|.+|||++-=|.
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~ 59 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 4589999987766555444467889999999999999999999877754343
No 27
>3h35_A Uncharacterized protein ABO_0056; ubiquitous hydrocarbon degrading BA structural genomics, PSI-2, protein structure initiative; HET: MSE SRT; 2.15A {Alcanivorax borkumensis}
Probab=37.97 E-value=14 Score=33.36 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=33.7
Q ss_pred EecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhh-hcccCccccchhHHHHHHHHHhhhcCCCCCeEE
Q 040813 118 LENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGV-AKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAA 196 (401)
Q Consensus 118 LEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi-~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~va 196 (401)
||.+||+-+|+.-..-|++-||+-.|. +.+.+|+|.+.+ -+-|.| .|-..|..+.....-|.+-
T Consensus 11 lE~~~y~~~~~~l~~m~a~LLa~s~d~-------~~~~~hp~f~~i~i~qLsp--------deA~iL~~l~~~~~~P~v~ 75 (185)
T 3h35_A 11 LEALHHPGELEGSPQNLHQLLGVSIEQ-------SVPQAQTMLVERHLASLTG--------DEARLLAALSDGSAFALLT 75 (185)
T ss_dssp ----------------------CCCSS-------CCCCHHHHHHHHHTTTSCH--------HHHHHHHHHTTSCCEEEEE
T ss_pred HHHhcCcccchHHHHHHHHHHHHHhcc-------CcccccHHHHHHHHHhcCh--------HHHHHHHHHhcCCCccEEE
Confidence 799999988877777899999988775 246678888887 554544 7888888888888899999
Q ss_pred Eec
Q 040813 197 IVG 199 (401)
Q Consensus 197 IlG 199 (401)
+..
T Consensus 76 v~~ 78 (185)
T 3h35_A 76 LYS 78 (185)
T ss_dssp EES
T ss_pred EEe
Confidence 864
No 28
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=37.50 E-value=1.5e+02 Score=27.83 Aligned_cols=160 Identities=12% Similarity=0.106 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCCCCHHHHHHHhcCC-CC-c-
Q 040813 40 NRVRAAVPTIKYLMGH--GAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIP-EG-G- 114 (401)
Q Consensus 40 ~RI~~~lpTI~~L~~~--gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~-~G-~- 114 (401)
.+++..+..++.+.++ ...+++|+.+. | -..+.++.+++.+.+. |.+-..++|.--++..+.++.++ .| +
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~n-p---v~~~g~e~f~~~~~~a-Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYAN-L---VFANGIDEFYTKAQAA-GVDSVLIADVPVEESAPFSKAAKAHGIAP 151 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHH-H---HHHHCHHHHHHHHHHH-TCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCc-H---HHHhhHHHHHHHHHHc-CCCEEEeCCCCHhhHHHHHHHHHHcCCeE
Confidence 3555678889998875 45688996544 1 1234567888888776 77776666664444444444332 23 2
Q ss_pred EEEEecccCCccccCCcHHHHHHHhhcCC--EEeecccccccccccchhhhhcccCccccchhHHHHHHHHHhhhcCCCC
Q 040813 115 VLLLENVRFHKEEEKNDPEFAKKLASLAD--LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKK 192 (401)
Q Consensus 115 vlLLEN~Rf~~eE~~~~~~f~~~LA~l~D--vyVNDAFg~aHR~haS~vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~r 192 (401)
|.++ ... ..++..+.+++.++ +|+-.. .-++|..+-++ .-+..-++.+.+. .+.
T Consensus 152 i~li------aP~--t~~eri~~i~~~~~gfvY~vS~--------~GvTG~~~~~~-----~~~~~~v~~vr~~---~~~ 207 (267)
T 3vnd_A 152 IFIA------PPN--ADADTLKMVSEQGEGYTYLLSR--------AGVTGTESKAG-----EPIENILTQLAEF---NAP 207 (267)
T ss_dssp ECEE------CTT--CCHHHHHHHHHHCCSCEEESCC--------CCCC-------------CHHHHHHHHHTT---TCC
T ss_pred EEEE------CCC--CCHHHHHHHHHhCCCcEEEEec--------CCCCCCccCCc-----HHHHHHHHHHHHh---cCC
Confidence 3233 111 13456777777787 555311 11223222111 1133344444443 345
Q ss_pred CeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHH
Q 040813 193 PFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFY 231 (401)
Q Consensus 193 P~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl 231 (401)
|. ++ |.-+++.=++-+.+..-+|.+++|-++-..+-
T Consensus 208 pv-~v--GfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~ 243 (267)
T 3vnd_A 208 PP-LL--GFGIAEPEQVRAAIKAGAAGAISGSAVVKIIE 243 (267)
T ss_dssp CE-EE--CSSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CE-EE--ECCcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 63 33 33477777765566678999999998876653
No 29
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=35.27 E-value=19 Score=32.51 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=25.5
Q ss_pred CcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 34 LNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 34 g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
|.++++.++.++..+|+.|.++|.+++++| |||
T Consensus 11 GTLl~~~~~~~~~~~l~~l~~~g~~~~i~T--gr~ 43 (249)
T 2zos_A 11 KTLIPGYEPDPAKPIIEELKDMGFEIIFNS--SKT 43 (249)
T ss_dssp TTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC
T ss_pred CCccCCCCcHHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 444444455667889999999999999998 886
No 30
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=35.19 E-value=29 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=25.7
Q ss_pred Ccccchhh--H-HHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 34 LNITDDNR--V-RAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 34 g~I~D~~R--I-~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
|.++|+.+ | .+....|+.|.++|.+++++| |||
T Consensus 11 GTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 46 (261)
T 2rbk_A 11 GTLVSFETHRIPSSTIEALEAAHAKGLKIFIAT--GRP 46 (261)
T ss_dssp TTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEC--CCh
Confidence 56666554 3 567788999999999998876 887
No 31
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=32.88 E-value=31 Score=31.36 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCChhhHHHHHHhhh---CCceeeccCCCC-HHHHHHHhcCCCCcEEEEecccCCccc
Q 040813 65 LGRPKGVTPKYSLKPLVPRLSELL---GVEVKMANDCIG-EEVEKMVAEIPEGGVLLLENVRFHKEE 127 (401)
Q Consensus 65 lGRP~g~~~~~SL~~va~~L~~~L---~~~V~f~~d~~g-~~~~~~i~~l~~G~vlLLEN~Rf~~eE 127 (401)
+|+|......-++...+..+-++- .-++.|+|--.. .....++..|++|.+++++|+-+.+.+
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DNv~~r~~y 161 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDDYSQRRWQ 161 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETTGGGCSSG
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeCCcCCcch
Confidence 567765433333433332221221 247888875433 456677899999999999997554443
No 32
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=32.48 E-value=83 Score=29.89 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=40.2
Q ss_pred CCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 15 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 15 ~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
.+-|||+|.+==.+=.+++ .-+|..+|++....|+.+.++|.+|||++==|
T Consensus 48 ~~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG 98 (281)
T 3nwy_A 48 SGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGG 98 (281)
T ss_dssp CCCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CcCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCh
Confidence 3568999998776655433 34788999999999999999999988877434
No 33
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=31.48 E-value=30 Score=30.88 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=33.0
Q ss_pred Ccccchhh-HHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCCCChhhHHHHHHhhhCCc
Q 040813 34 LNITDDNR-VRAAVPTIKYLMGHGAKVILSSHL-GRPKGVTPKYSLKPLVPRLSELLGVE 91 (401)
Q Consensus 34 g~I~D~~R-I~~~lpTI~~L~~~gakvvl~SHl-GRP~g~~~~~SL~~va~~L~~~L~~~ 91 (401)
|.++|+.+ +..+..+|+.|.++|.+++++|-. ||| ...+.+++.+ +|.+
T Consensus 26 GTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~--------~~~~~~~~~~-lg~~ 76 (271)
T 1vjr_A 26 GTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLG--------AQDYVRKLRN-MGVD 76 (271)
T ss_dssp TTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSC--------HHHHHHHHHH-TTCC
T ss_pred CcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCC--------HHHHHHHHHH-cCCC
Confidence 56666644 345677899999999999999876 554 3445555544 4543
No 34
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=30.61 E-value=95 Score=28.41 Aligned_cols=51 Identities=25% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 16 KGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 16 ~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
+-|||++.+==++=.++++.-+|..+|++....|..+.+.|.+|||++-=|
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG 56 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGG 56 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 458999887766654322234788999999999999999999987664333
No 35
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.78 E-value=40 Score=31.07 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCC
Q 040813 338 AIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAD 371 (401)
Q Consensus 338 ~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d 371 (401)
++-+.+.+..+.|+..||||+=++..++++|+..
T Consensus 142 e~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~ 175 (225)
T 2pju_A 142 DARGQINELKANGTEAVVGAGLITDLAEEAGMTG 175 (225)
T ss_dssp HHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcE
Confidence 3344445555568899999999999999999764
No 36
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=29.04 E-value=41 Score=30.76 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHH
Q 040813 43 RAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPR 83 (401)
Q Consensus 43 ~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~ 83 (401)
.+....|+.|.++|.+++++| ||| ..++.++.+.
T Consensus 25 ~~~~~aL~~l~~~Gi~vviaT--GR~-----~~~~~~~~~~ 58 (282)
T 1rkq_A 25 PAVKNAIAAARARGVNVVLTT--GRP-----YAGVHNYLKE 58 (282)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC--SSC-----GGGTHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEc--CCC-----HHHHHHHHHH
Confidence 345678999999999999999 886 2345555443
No 37
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=28.77 E-value=64 Score=28.67 Aligned_cols=51 Identities=10% Similarity=0.225 Sum_probs=35.0
Q ss_pred Ccccchhh-HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCce
Q 040813 34 LNITDDNR-VRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEV 92 (401)
Q Consensus 34 g~I~D~~R-I~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V 92 (401)
|.++|+.+ +.++..+|+.|.++|.+++++| ||+ .-+...+.++|.++ |.++
T Consensus 15 GTLl~~~~~~~~~~~ai~~l~~~Gi~v~laT--grs-----~r~~~~~~~~l~~l-g~~~ 66 (266)
T 3pdw_A 15 GTMYNGTEKIEEACEFVRTLKDRGVPYLFVT--NNS-----SRTPKQVADKLVSF-DIPA 66 (266)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCEEEEE--SCC-----SSCHHHHHHHHHHT-TCCC
T ss_pred CceEeCCEeCccHHHHHHHHHHCCCeEEEEe--CCC-----CCCHHHHHHHHHHc-CCCC
Confidence 56666544 4678889999999999999997 443 12455666777653 5543
No 38
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=28.49 E-value=40 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.1
Q ss_pred Ccccchhh--H-HHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 34 LNITDDNR--V-RAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 34 g~I~D~~R--I-~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
|.++|+.+ | .+...+|+.|.++|.+++++| |||
T Consensus 30 GTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaT--GR~ 65 (283)
T 3dao_A 30 GTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCS--GRQ 65 (283)
T ss_dssp TTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 66666543 4 677889999999999999987 886
No 39
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=28.37 E-value=26 Score=32.09 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 43 RAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 43 ~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
.+....|+.|.++|.+++++| |||
T Consensus 29 ~~~~~~l~~l~~~G~~~~iaT--GR~ 52 (275)
T 1xvi_A 29 QPAAPWLTRLREANVPVILCS--SKT 52 (275)
T ss_dssp CTTHHHHHHHHHTTCCEEEEC--SSC
T ss_pred HHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 456788999999999999998 886
No 40
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=27.87 E-value=2e+02 Score=26.98 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=72.5
Q ss_pred EEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeeccCC
Q 040813 19 RVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDC 98 (401)
Q Consensus 19 ~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~d~ 98 (401)
+|++|+|=+.-+. .| =|.+++ ||-..+. .|..+.+.. | + .+ ++ .+|.+|...+.-
T Consensus 2 ki~ir~Da~~~IG-~G------HvmRcl-~LA~~l~---~v~F~~~~~-~-~-----~~------~~-~~g~~v~~l~~~ 56 (282)
T 3hbm_A 2 KVLFRSDSSSQIG-FG------HIKRDL-VLAKQYS---DVSFACLPL-E-G-----SL------ID-EIPYPVYELSSE 56 (282)
T ss_dssp CEEEEECCBTTTB-SH------HHHHHH-HHHTTCS---SEEEEECCC-T-T-----CC------GG-GCCSCEEECSSS
T ss_pred EEEEEEecCCCcc-cc------HHHHHH-HHHHHHH---hCEEEEecC-c-H-----hH------HH-HCCCeEEEcCcc
Confidence 5899999988764 23 456666 3332222 566665432 1 1 00 11 126666554321
Q ss_pred CCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhh----------------cCCEEeecccccccccccchhh
Q 040813 99 IGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLAS----------------LADLYVNDAFGSAHRAHASTEG 162 (401)
Q Consensus 99 ~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~----------------l~DvyVNDAFg~aHR~haS~vg 162 (401)
--++..+.++.. +-|+++++.-.+..+ +-+.|.+ .||+-+|=.+++- .+-|-
T Consensus 57 d~~~~~~~l~~~-~~d~lIvD~Y~~~~~-------~~~~lk~~~~~~i~~iDD~~~~~~~Dllin~~~~~~----~~~Y~ 124 (282)
T 3hbm_A 57 SIYELINLIKEE-KFELLIIDHYGISVD-------DEKLIKLETGVKILSFDDEIKPHHCDILLNVNAYAK----ASDYE 124 (282)
T ss_dssp CHHHHHHHHHHH-TCSEEEEECTTCCHH-------HHHHHHHHHCCEEEEECSSCCCCCCSEEEECSTTCC----GGGGT
T ss_pred CHHHHHHHHHhC-CCCEEEEECCCCCHH-------HHHHHHHhcCcEEEEEecCCCcccCCEEEeCCcccc----hhhcc
Confidence 112333444433 447888888776432 2333322 3565555444421 11111
Q ss_pred hhcccCc---cccch---hHHHHHHHHHhhhcCCCCCeEEE-ecCCcccc
Q 040813 163 VAKFLKP---SVAGF---LMQKELDYLVGAVSNPKKPFAAI-VGGSKVST 205 (401)
Q Consensus 163 i~~~l~~---~~aG~---lmekEl~~L~~~~~~p~rP~vaI-lGGaKvsd 205 (401)
..+|+ -..|. ++.+|.....+. ..++.|.+.| +||+-...
T Consensus 125 --~~~p~~~~~l~G~~Y~~lR~eF~~~~~~-~r~~~~~ILv~~GG~d~~~ 171 (282)
T 3hbm_A 125 --GLVPFKCEVRCGFSYALIREEFYQEAKE-NRKKKYDFFICMGGTDIKN 171 (282)
T ss_dssp --TTCC-CCEEEESGGGCCCCHHHHHHTTC-CCCCCEEEEEECCSCCTTC
T ss_pred --ccCCCCCeEeeCCcccccCHHHHHhhhh-ccccCCeEEEEECCCchhh
Confidence 11111 25688 888888766543 2234455655 57765443
No 41
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=26.86 E-value=43 Score=29.78 Aligned_cols=33 Identities=18% Similarity=0.519 Sum_probs=25.1
Q ss_pred Ccccc-h-hhH-HHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 34 LNITD-D-NRV-RAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 34 g~I~D-~-~RI-~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
|.++| + .+| .+...+|+.+.++|.++++.| |||
T Consensus 21 GTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 56 (268)
T 3r4c_A 21 GTLLSFETHKVSQSSIDALKKVHDSGIKIVIAT--GRA 56 (268)
T ss_dssp TTTBCTTTCSCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 56666 2 344 456779999999999999885 887
No 42
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=26.85 E-value=1.2e+02 Score=27.18 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=35.4
Q ss_pred CEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEe
Q 040813 18 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~S 63 (401)
|+++|.+-=++=-++++.-.|..++++....|..|.+.|.++||++
T Consensus 8 ~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~ 53 (239)
T 1ybd_A 8 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVV 53 (239)
T ss_dssp SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7888888777644332334578899999999999999999977654
No 43
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=26.82 E-value=76 Score=30.91 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCCCcccccccccCCCCEEEEEeccCCccCCCCccc-chhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhh
Q 040813 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNIT-DDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKP 79 (401)
Q Consensus 1 ~~~~~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~-D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~ 79 (401)
|+.++.+.+.. +.|.+|+-+| |.+. .+.-|..+..+|++|.++|-+++++|--+ ..|-+.
T Consensus 1 ~~~~~~~~~~~----~~~~~l~D~D--------Gvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~-------~~~~~~ 61 (352)
T 3kc2_A 1 MIGKRFFQTTS----KKIAFAFDID--------GVLFRGKKPIAGASDALKLLNRNKIPYILLTNGG-------GFSERA 61 (352)
T ss_dssp ---------------CCEEEEECCB--------TTTEETTEECTTHHHHHHHHHHTTCCEEEECSCC-------SSCHHH
T ss_pred CchHHHhhhhc----cCCEEEEECC--------CeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCC-------CCCchH
Confidence 45555555542 2344555333 3332 23456677889999999999999987543 457788
Q ss_pred HHHHHHhhhCCceeeccCCC
Q 040813 80 LVPRLSELLGVEVKMANDCI 99 (401)
Q Consensus 80 va~~L~~~L~~~V~f~~d~~ 99 (401)
.+++|++.||.++. .++++
T Consensus 62 ~~~~l~~~lgi~~~-~~~i~ 80 (352)
T 3kc2_A 62 RTEFISSKLDVDVS-PLQII 80 (352)
T ss_dssp HHHHHHHHHTSCCC-GGGEE
T ss_pred HHHHHHHhcCCCCC-hhhEe
Confidence 99999988998875 34444
No 44
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=26.24 E-value=1.1e+02 Score=29.64 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHCCCe-EEEEecCCCCCC
Q 040813 44 AAVPTIKYLMGHGAK-VILSSHLGRPKG 70 (401)
Q Consensus 44 ~~lpTI~~L~~~gak-vvl~SHlGRP~g 70 (401)
++-..++.|.++|+. ||+++|+|-+..
T Consensus 195 ~~~~~v~~Lk~~g~D~II~l~H~G~~~d 222 (341)
T 3gve_A 195 SANETIPKMKAEGADVIIALAHTGIEKQ 222 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCCCCSS
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCcccc
Confidence 334455666678997 899999998643
No 45
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=25.96 E-value=35 Score=30.57 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.8
Q ss_pred hH-HHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 41 RV-RAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 41 RI-~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
+| .+....|+.|.++| +++++| |||
T Consensus 23 ~i~~~~~~al~~l~~~g-~v~iaT--GR~ 48 (239)
T 1u02_A 23 YADAGLLSLISDLKERF-DTYIVT--GRS 48 (239)
T ss_dssp CCCHHHHHHHHHHHHHS-EEEEEC--SSC
T ss_pred CCCHHHHHHHHHHhcCC-CEEEEe--CCC
Confidence 44 46778899999999 999998 886
No 46
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=25.76 E-value=34 Score=29.32 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCce
Q 040813 42 VRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEV 92 (401)
Q Consensus 42 I~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V 92 (401)
+..+..+|+.|.++|.+++|+| |||. -.+....++|.+ +|.+.
T Consensus 26 ~~~~~~al~~l~~~G~~iii~T--gR~~-----~~~~~~~~~l~~-~gi~~ 68 (142)
T 2obb_A 26 IPFAVETLKLLQQEKHRLILWS--VREG-----ELLDEAIEWCRA-RGLEF 68 (142)
T ss_dssp CTTHHHHHHHHHHTTCEEEECC--SCCH-----HHHHHHHHHHHT-TTCCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEe--CCCc-----ccHHHHHHHHHH-cCCCe
Confidence 3578899999999999999987 5652 234445555554 34443
No 47
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=24.52 E-value=2.6e+02 Score=24.53 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCe
Q 040813 191 KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVS 264 (401)
Q Consensus 191 ~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~ 264 (401)
..-+-+|.|=..|..=|.+-+.++++-.++++.|-=|-.|-..+|++. +.-..+.+++..++.++..++
T Consensus 73 t~~~GAVa~v~~vknPI~vAr~Vme~t~HvlLvG~GA~~fA~~~G~~~-----~~l~t~~~~~~~~~~~~~~~q 141 (162)
T 1apy_A 73 TMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFIN-----EDLSTSASQALHSDWLARNCQ 141 (162)
T ss_dssp TCCEEEEEEECSCSCHHHHHHHHHHHBSCSEEEHHHHHHHHHHTTCCC-----CCCCCHHHHHHHHHHHHTTSC
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHhcCCCeEEEcHHHHHHHHHcCCCc-----cccCCHHHHHHHHHHHHhccC
Confidence 344555555555888899999999999999999999999999999986 222355666777777766543
No 48
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=23.69 E-value=3.2e+02 Score=27.43 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHH
Q 040813 39 DNRVRAAVPTIKYL 52 (401)
Q Consensus 39 ~~RI~~~lpTI~~L 52 (401)
.+-+++++.+++..
T Consensus 359 p~~i~a~l~al~~~ 372 (494)
T 4hv4_A 359 PTEVDATIKAARAG 372 (494)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34566666666654
No 49
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=23.37 E-value=89 Score=29.90 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCEEEEEeccCCccC----CCC--cccchhhHHHHHHHHHHHHHCCCeEEE-EecCCCC
Q 040813 4 KKSVSVLKEADLKGKRVFVRVDLNVPLD----DNL--NITDDNRVRAAVPTIKYLMGHGAKVIL-SSHLGRP 68 (401)
Q Consensus 4 ~~~i~~l~d~d~~gK~VlvRvD~NvP~~----~~g--~I~D~~RI~~~lpTI~~L~~~gakvvl-~SHlGRP 68 (401)
+..+..|- +=.|+.+++=+|.-+.+. +.| .-.++.+|..---++..+++.|+.-|+ -..++++
T Consensus 5 ~~~l~ri~--~~~G~~~ilA~Dhr~~l~~~~~~~g~~~~~~~~~l~~~k~lv~~~~~~~~~avl~~~g~~~~ 74 (304)
T 1to3_A 5 NYTIKDIT--RASGGFAMLAVDQREAMRLMFAAAGAKTPVADSVLTDFKVNAAKILSPYASAVLLDQQFCYR 74 (304)
T ss_dssp CCCGGGGS--CTTSCEEEEECCCCHHHHHHHHHTTCCSSCCHHHHHHHHHHHHHHHGGGCSEEEECTTTTHH
T ss_pred hhHHHHHh--CCCCCEEEEEccChhHHHHHHHhcCCCCCcccchhhhHHHHHHHHHhcCCCEEEeCHHHHHH
Confidence 34555553 247899999999877621 112 233466888888899999999988444 4456655
No 50
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=23.30 E-value=2.7e+02 Score=26.83 Aligned_cols=45 Identities=20% Similarity=0.045 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeecc
Q 040813 45 AVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMAN 96 (401)
Q Consensus 45 ~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~~ 96 (401)
+.+.++.|+++|.. +.++|+-.||.+. + |+. .+.+..|.||...+
T Consensus 34 a~~~L~~L~~~~~~i~~Vvt~pd~~~~~----~--~v~-~~A~~~gIpv~~~~ 79 (329)
T 2bw0_A 34 GQEVYCHLRKEGHEVVGVFTVPDKDGKA----D--PLG-LEAEKDGVPVFKYS 79 (329)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCSSCC----C--HHH-HHHHHHTCCEEECS
T ss_pred HHHHHHHHHHCCCeEEEEEeCCCcCCCC----C--HHH-HHHHHcCCCEEecC
Confidence 45789999999988 4577777776321 2 554 44556688887654
No 51
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=23.18 E-value=1.4e+02 Score=23.48 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=31.2
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceeec
Q 040813 49 IKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA 95 (401)
Q Consensus 49 I~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f~ 95 (401)
+++.-+.++..|+|.+.||.. . ..+-+-.+++++-+...+||-.+
T Consensus 92 ~~~a~~~~~dliV~G~~~~~~-~-~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 92 LQAARAEKADLIVMGTRGLGA-L-GSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHTTCSEEEEESSCTTC-C-SCSSSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCCEEEECCCCCch-h-hhhhhccHHHHHHhcCCCCEEEe
Confidence 345566788888888777752 2 23446688888888888888654
No 52
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=22.60 E-value=1.6e+02 Score=27.01 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEe
Q 040813 16 KGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63 (401)
Q Consensus 16 ~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~S 63 (401)
++|++++.+-=++=.+++..-.|..++++....|..|.+.|.++||++
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~ 58 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVI 58 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 568898888777633321233678899999999999999999876554
No 53
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=22.22 E-value=61 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCe-EEEEecCCCCC
Q 040813 44 AAVPTIKYLMGHGAK-VILSSHLGRPK 69 (401)
Q Consensus 44 ~~lpTI~~L~~~gak-vvl~SHlGRP~ 69 (401)
++-..++.|.++|+. ||++||+|-+.
T Consensus 189 ~~~~~v~~lr~~g~D~II~l~H~G~~~ 215 (339)
T 3jyf_A 189 TARKYIPEMRAKGADVVVVVAHSGLSA 215 (339)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCccc
Confidence 333455566678998 89999999864
No 54
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=21.86 E-value=1e+02 Score=30.36 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=37.2
Q ss_pred CEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEec
Q 040813 18 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSH 64 (401)
Q Consensus 18 K~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SH 64 (401)
|+++|.+==++=.++++ -.|..++++....|..|.++|.+|||+++
T Consensus 5 k~iVIKiGGs~l~~~~~-~~~~~~l~~la~~Ia~l~~~G~~vVlV~g 50 (367)
T 2j5v_A 5 QTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRIVIVTS 50 (367)
T ss_dssp CEEEEEECHHHHTTTSS-SCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEEECcHHhcCCCC-CcCHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 78888877766444333 47789999999999999999999988876
No 55
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=21.73 E-value=62 Score=28.47 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Q 040813 43 RAAVPTIKYLMGHGAKVILSSHLGRP 68 (401)
Q Consensus 43 ~~~lpTI~~L~~~gakvvl~SHlGRP 68 (401)
.+...+|+.|.++|.+++++| |||
T Consensus 23 ~~~~~al~~l~~~G~~v~i~T--GR~ 46 (231)
T 1wr8_A 23 EKALEAIRRAESLGIPIMLVT--GNT 46 (231)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC--SSC
T ss_pred HHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 456778999999999999887 775
No 56
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=21.40 E-value=1.6e+02 Score=26.75 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=36.1
Q ss_pred CCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCC
Q 040813 17 GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLG 66 (401)
Q Consensus 17 gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlG 66 (401)
-|+++|.+-=++=-++++.-.|..++++.+..|..|.+.|.+|||++==|
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG 56 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGG 56 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCT
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 37888887777643322224577899999999999999999977665333
No 57
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=20.49 E-value=68 Score=32.65 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCe-EEEEecCCCC
Q 040813 41 RVRAAVPTIKYLMGHGAK-VILSSHLGRP 68 (401)
Q Consensus 41 RI~~~lpTI~~L~~~gak-vvl~SHlGRP 68 (401)
-+.++-..++.|.++|+. ||++||+|-+
T Consensus 171 ~v~~~~~~v~~Lr~~g~D~II~LsH~G~~ 199 (530)
T 4h1s_A 171 EITALQPEVDKLKTLNVNKIIALGHSGFE 199 (530)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEESCHH
T ss_pred HHHHHHHHHhhhhhcCCCEEEEeccCCch
Confidence 456666778888889998 9999999954
No 58
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=20.31 E-value=1.5e+02 Score=27.86 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=42.6
Q ss_pred CCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHhhhCCceee
Q 040813 15 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKM 94 (401)
Q Consensus 15 ~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~~L~~~V~f 94 (401)
+++|+++|.+-=|+ +.|..+++.....|..|.+.|.++| +-|=|+| .+ ..+-+.++.+-.|
T Consensus 24 ~~~k~iVIKlGGs~-------l~~~~~~~~~~~~i~~l~~~G~~vV-lVhGgG~----------~i-~~~~~~~g~~~~~ 84 (300)
T 2buf_A 24 FVGKTLVIKYGGNA-------MESEELKAGFARDVVLMKAVGINPV-VVHGGGP----------QI-GDLLKRLSIESHF 84 (300)
T ss_dssp HTTCEEEEEECCTT-------TTSSHHHHHHHHHHHHHHHTTCEEE-EEECCCH----------HH-HHHHHHTTCCCCB
T ss_pred hcCCeEEEEECchh-------hCCchHHHHHHHHHHHHHHCCCeEE-EEECCcH----------HH-HHHHHHcCCCccc
Confidence 67899888765443 4456788899999999999999865 4565654 22 3344456766555
Q ss_pred cc
Q 040813 95 AN 96 (401)
Q Consensus 95 ~~ 96 (401)
.+
T Consensus 85 ~~ 86 (300)
T 2buf_A 85 ID 86 (300)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 59
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=20.11 E-value=1.4e+02 Score=27.25 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhhcCCCCCeEEEecCCcccc--H----H-HHHHHHHHhcCeEEEchHHH------HHHHHHcCCccC
Q 040813 175 LMQKELDYLVGAVSNPKKPFAAIVGGSKVST--K----I-GVIESLLEKVDILLLGGGMI------FTFYKAQGHSVG 239 (401)
Q Consensus 175 lmekEl~~L~~~~~~p~rP~vaIlGGaKvsd--K----i-~~i~~Ll~kvD~lliGG~ma------~tFl~a~G~~iG 239 (401)
-+..|+..--+.+..-.+|.|+|.||++.+. . . .+-+.|.+.==.|+.||+.+ -..+.+.|..||
T Consensus 20 ~i~~e~~~~~~~l~~~~~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg~GiM~aa~~gAl~~gG~~iG 97 (217)
T 1wek_A 20 RILAEFVEGFETLSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEAGGVSVG 97 (217)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcCCCEEE
Confidence 3456655444445433358999999999874 1 2 22233333445677776532 334444555555
No 60
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.07 E-value=2.2e+02 Score=26.93 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=38.1
Q ss_pred cCCccCCCCcccchhhHHHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhHHHHHHhhh
Q 040813 26 LNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELL 88 (401)
Q Consensus 26 ~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gak-vvl~SHlGRP~g~~~~~SL~~va~~L~~~L 88 (401)
.--|++++|+ +|...+++. +++++++|.. ++++.+-| .-..+|.+...+.++...
T Consensus 24 ~vTPf~~dg~-iD~~~l~~l---v~~li~~Gv~gl~v~GttG----E~~~Ls~~Er~~v~~~~~ 79 (304)
T 3cpr_A 24 MVTPFTESGD-IDIAAGREV---AAYLVDKGLDSLVLAGTTG----ESPTTTAAEKLELLKAVR 79 (304)
T ss_dssp CCCCBCTTSC-BCHHHHHHH---HHHHHHTTCCEEEESSTTT----TTTTSCHHHHHHHHHHHH
T ss_pred eeccCCCCCC-cCHHHHHHH---HHHHHHcCCCEEEECcccc----ChhhCCHHHHHHHHHHHH
Confidence 4468876665 577777775 5899999998 88888877 235677766655554433
Done!