RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 040813
(401 letters)
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 741 bits (1915), Expect = 0.0
Identities = 374/401 (93%), Positives = 392/401 (97%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
MA K+SV LKEADLKGKRVFVRVDLNVPLDDN NITDD R+RAAVPTIKYLMGHGA+VI
Sbjct: 1 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVI 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L SHLGRPKGVTPKYSLKPLVPRLSELLGVEV MANDCIGEEVEK+VAE+PEGGVLLLEN
Sbjct: 61 LCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKEL 180
VRF+KEEEKNDPEFAKKLASLAD+YVNDAFG+AHRAHASTEGVAK+LKPSVAGFLMQKEL
Sbjct: 121 VRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKEL 180
Query: 181 DYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240
DYLVGAV+NPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQG+SVGS
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGS 240
Query: 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDV 300
SLVEEDKLDLATSL+EKAK+KGVSLLLPTDVVIADKFA DANSKVVPA+AIPDGWMGLD+
Sbjct: 241 SLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDI 300
Query: 301 GPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
GPD+IK+FSEALDTTKTIIWNGPMGVFEF+KFAAGTEAIAKKLAELSGKGVTTIIGGGDS
Sbjct: 301 GPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
Query: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
VAAVEKVGLADKMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 706 bits (1824), Expect = 0.0
Identities = 344/399 (86%), Positives = 378/399 (94%)
Query: 3 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILS 62
AKKSV L ADLKGK+VFVR DLNVPLDDN NITDD R+RAA+PTIKYL+ +GAKVILS
Sbjct: 78 AKKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILS 137
Query: 63 SHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVR 122
SHLGRPKGVTPK+SL PLVPRLSELLG++V A+DCIG EVEK+VA +PEGGVLLLENVR
Sbjct: 138 SHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 197
Query: 123 FHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDY 182
F+KEEEKN+PEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDY
Sbjct: 198 FYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDY 257
Query: 183 LVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSL 242
LVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSL
Sbjct: 258 LVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSL 317
Query: 243 VEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGP 302
VEEDKL+LATSL+ KAK+KGVSLLLPTDVVIADKFA DANSK+VPA+AIPDGWMGLD+GP
Sbjct: 318 VEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGP 377
Query: 303 DAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVA 362
D++K+F+EALDTT+T+IWNGPMGVFEF+KFA GTEA+AKKLAELSGKGVTTIIGGGDSVA
Sbjct: 378 DSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVA 437
Query: 363 AVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
AVEKVG+AD MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct: 438 AVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEA 476
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 668 bits (1726), Expect = 0.0
Identities = 256/391 (65%), Positives = 310/391 (79%), Gaps = 5/391 (1%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
L + DLKGKRV VRVD NVP+ D ITDD R+RAA+PTIKYL+ GAKVIL SHLGRPK
Sbjct: 4 LDDLDLKGKRVLVRVDFNVPVKDG-KITDDTRIRAALPTIKYLLEKGAKVILLSHLGRPK 62
Query: 70 GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEK 129
G P++SL P+ RLSELLG EVK +DCIGEE + +A + +G VLLLENVRF+K EEK
Sbjct: 63 GEDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKGEEK 122
Query: 130 NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSN 189
NDPE AKKLASL D++VNDAFG+AHRAHAST G+AKFLKP+ AGFLM+KEL+ L A+ N
Sbjct: 123 NDPELAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFLKPAAAGFLMEKELEALGKALEN 182
Query: 190 PKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLD 249
P++PF AI+GG+KVS KIGV+E+LLEKVD L++GGGM TF KAQG++VG SLVEED +D
Sbjct: 183 PERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLID 242
Query: 250 LATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFS 309
A L+EKAK KGV + LP DVV+A +F +DA + VV IPD WM LD+GP I+ F+
Sbjct: 243 TAKELLEKAKEKGVKIPLPVDVVVAKEF-SDAEATVVSVDEIPDDWMILDIGPKTIELFA 301
Query: 310 EALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL 369
E + KTI+WNGPMGVFEF+ FA GT+A+AK +AE + +IIGGGD+ AAVEK+GL
Sbjct: 302 EIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAESTA---FSIIGGGDTAAAVEKLGL 358
Query: 370 ADKMSHISTGGGASLELLEGKTLPGVLALDD 400
ADK SHISTGGGASLE LEGK LPGV AL++
Sbjct: 359 ADKFSHISTGGGASLEFLEGKELPGVAALEE 389
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 632 bits (1634), Expect = 0.0
Identities = 257/386 (66%), Positives = 304/386 (78%), Gaps = 9/386 (2%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
L + DLKGKRV VRVD NVPLDD ITDD R+RAA+PTIKYL+ GAKV+L SHLGRPK
Sbjct: 2 LDDLDLKGKRVLVRVDFNVPLDDG-KITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRPK 60
Query: 70 G-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE 128
G KYSLKP+ RLSELLG VK +DCIG E E +A + G VLLLENVRF+ EEE
Sbjct: 61 GGPKDKYSLKPVAKRLSELLGKPVKFVDDCIGPEAEAAIAALKPGEVLLLENVRFYAEEE 120
Query: 129 ----KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLV 184
KNDPEFAKKLASL D+YVNDAFG+AHRAHAST GVAK L PS AGFLM+KEL+ L
Sbjct: 121 GKEEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTVGVAKVLPPSAAGFLMEKELEALS 180
Query: 185 GAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVE 244
A+ NP++PF AI+GG+KVS KI VIE+LL+KVD LL+GGGM TF KAQG+++G SLVE
Sbjct: 181 KALENPERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVE 240
Query: 245 EDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDA 304
ED ++ A L+EKAK KGV ++LP DVV+AD+F+ADA +KVV IPDGWMGLD+GP
Sbjct: 241 EDLIETAKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPKT 300
Query: 305 IKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAV 364
I+ F+E + KT++WNGPMGVFEF+ FA GT+A+AK +AE G +I+GGGD+ AAV
Sbjct: 301 IELFAEVIKDAKTVVWNGPMGVFEFENFAKGTKAVAKAIAES---GAFSIVGGGDTAAAV 357
Query: 365 EKVGLADKMSHISTGGGASLELLEGK 390
EK GLADK SHISTGGGASLELLEGK
Sbjct: 358 EKAGLADKFSHISTGGGASLELLEGK 383
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 613 bits (1583), Expect = 0.0
Identities = 256/399 (64%), Positives = 304/399 (76%), Gaps = 10/399 (2%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
+ + DLKGKRV VRVD NVP+DD ITDD R+RAA+PTIKYL+ GAKV+L SHLGRPK
Sbjct: 1 IDDLDLKGKRVLVRVDFNVPVDDG-KITDDTRIRAALPTIKYLLEQGAKVVLLSHLGRPK 59
Query: 70 GVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE 128
G KYSL P+ LSELLG V ANDC+G E E+ V + G VLLLENVRF+ EEE
Sbjct: 60 GEPNEKYSLAPVAKALSELLGQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEE 119
Query: 129 KN-------DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELD 181
D EFAKKLASL D+YVNDAFG+AHRAHAS G+A L PS AGFLM+KEL
Sbjct: 120 GKRDDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMVGIALLL-PSAAGFLMEKELK 178
Query: 182 YLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241
YL A+ NP++PF AI+GG+KVS KI VIE+LL+KVD L++GGGM FTF KAQG +G S
Sbjct: 179 YLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKS 238
Query: 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVG 301
L EED ++LA SL+EKAK+KGV ++LP DVV+ADKF ADAN+KVV IPDGWMGLD+G
Sbjct: 239 LFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIG 298
Query: 302 PDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSV 361
P I+ F+E + KTI+WNGPMGVFEF FA GT+AIA +A + G +IIGGGD+
Sbjct: 299 PKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAATKAGAFSIIGGGDTA 358
Query: 362 AAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
AA EK GLADK+SH+STGGGASLELLEGK LPGV AL++
Sbjct: 359 AAAEKFGLADKISHVSTGGGASLELLEGKELPGVAALEE 397
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 584 bits (1508), Expect = 0.0
Identities = 248/405 (61%), Positives = 305/405 (75%), Gaps = 16/405 (3%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
M KK++ + DL GKRV VRVD NVP+DD ITDD R+RAA+PTIKYL+ GAKV+
Sbjct: 1 MMMKKTI---LDLDLAGKRVLVRVDFNVPVDDG-KITDDTRIRAALPTIKYLLEKGAKVV 56
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L SHLGRPK + K SL+P+ RLSELLG EVK +DC+G E + VAE+ +G VLLLEN
Sbjct: 57 LLSHLGRPKEYSDKTSLEPVAKRLSELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLEN 116
Query: 121 VRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 176
VRF+ EEEKND E KKLASL D++VNDAFG+AHRAHAST G AKFL PS AGFLM
Sbjct: 117 VRFYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTAHRAHASTVGFAKFL-PSAAGFLM 175
Query: 177 QKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGH 236
+KELD L A+ NP++PF AI+GG+KVS KIGVIE+LL+K D L++GGGM TF KAQG+
Sbjct: 176 EKELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGY 235
Query: 237 SVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWM 296
VG SLVE D +D A L+EKAK K ++LP DVV+A +F+ DA + V IPD M
Sbjct: 236 DVGKSLVEFDLIDGAKELLEKAKDK---IVLPVDVVVAKEFSRDAPATVKL--EIPDDLM 290
Query: 297 GLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIG 356
LD+GP I+ F+E + KTI+WNGPMGVFEF+ FA GTE +AK +A+ SG +IIG
Sbjct: 291 ILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAKSSGA--FSIIG 348
Query: 357 GGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
GGD+ AA++K+GLADK+SHISTGGGASLE LEGK LPGV AL+++
Sbjct: 349 GGDTAAAIDKLGLADKISHISTGGGASLEFLEGKELPGVEALEES 393
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 589 bits (1519), Expect = 0.0
Identities = 268/400 (67%), Positives = 324/400 (81%), Gaps = 8/400 (2%)
Query: 3 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILS 62
KK++ ++ D+KGKRV VRVD NVPLD+N NITDD R+RAA+PTIKYL+ HGAKVIL
Sbjct: 2 NKKTI---RDIDVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILV 58
Query: 63 SHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENV 121
SHLGRPKG PK+S+ P+ RLSELLG EV A D IG++ +K VA++ EG VLLLENV
Sbjct: 59 SHLGRPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENV 118
Query: 122 RFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELD 181
RFHKEE KNDPEFAK+LASLAD+YVNDAFG+AHRAHAST GVA++L P+VAGFLM+KE++
Sbjct: 119 RFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAEYL-PAVAGFLMEKEIE 177
Query: 182 YLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241
+L A++NP++PF AI+GG+KVS KIGVIE+LLEKVD LL+GGGM +TF KA+G+ VG S
Sbjct: 178 FLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKS 237
Query: 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVG 301
LVEEDKLDLA L+ KA+ KGV LLLP D V+A +F DA KVVP+ AIP+ WMGLD+G
Sbjct: 238 LVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIG 297
Query: 302 PDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSV 361
P+ I+ F++ + KTI+WNGPMGVFEFD FA GT A+A+ +AE G TIIGGGDS
Sbjct: 298 PETIELFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAE---SGAITIIGGGDSA 354
Query: 362 AAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
AAVEK+G ADKMSHISTGGGASLE LEGK LPG+ L D
Sbjct: 355 AAVEKLGFADKMSHISTGGGASLEFLEGKVLPGIACLLDK 394
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 481 bits (1240), Expect = e-170
Identities = 219/407 (53%), Positives = 277/407 (68%), Gaps = 22/407 (5%)
Query: 13 ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG- 70
LKGKRV +RVD NVP+ + I D R++A +PTIKYL+ GAK V+L SHLGRP G
Sbjct: 13 DQLKGKRVLIRVDFNVPIKEG-VIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGR 71
Query: 71 VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-- 128
KYSLKP+VP+L ELLG +V NDC+G EVE+ A G V+LLEN+RFH EEE
Sbjct: 72 RVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGK 131
Query: 129 ---------KNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFL 175
K D E F K L L D+YVNDAFG+AHRAH+S GV L VAGFL
Sbjct: 132 GVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAHRAHSSMVGVD--LPVKVAGFL 189
Query: 176 MQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTF-YKAQ 234
M+KELDY A+ NP++PF AI+GG+KV+ KI +I++LL+KVD +++GGGM FTF
Sbjct: 190 MKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLD 249
Query: 235 GHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPD 293
+G SL +E+ + +MEKAK K V + LP D V ADKF +AN+KVV IPD
Sbjct: 250 NMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPD 309
Query: 294 GWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTT 353
GWMGLD GP +I+ F+EA+ KTI+WNGP GVFE FA G+ A+ + + + KG T
Sbjct: 310 GWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVVKATEKGAIT 369
Query: 354 IIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
I+GGGD+ + VEK G A+K+SH+STGGGASLELLEGK LPGV+AL +
Sbjct: 370 IVGGGDTASLVEKTGAANKVSHVSTGGGASLELLEGKELPGVVALSN 416
>gnl|CDD|227908 COG5621, COG5621, Predicted secreted hydrolase [General function
prediction only].
Length = 354
Score = 31.3 bits (71), Expect = 0.90
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 21/104 (20%)
Query: 226 MIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKV 285
M+F +A G V + + D VS L PTDV + +D N +
Sbjct: 254 MLFRLRQADGRYVSGNWISADG--------------KVSPLEPTDVQLEPLRTSDQNGRT 299
Query: 286 VP---ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGV 326
P IP GL+V A+ A T W GP+ +
Sbjct: 300 YPLEWEVKIPS--RGLNVKTAALD--ENAWMATSIPYWEGPIEL 339
>gnl|CDD|235347 PRK05113, PRK05113, electron transport complex protein RnfB;
Provisional.
Length = 191
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 79 PLVPRLSELLGVEVK-MANDCIGEEVEKMVAEIPE 112
+ +L+ELLGVE + + + + VA I E
Sbjct: 79 ATMLKLAELLGVEPQPLDGEAQEATPARKVAFIDE 113
>gnl|CDD|240573 cd12953, MMP_TTHA0227, Minimal MMP-like domain found in Thermus
thermophilus hypothetical protein TTHA0227 and similar
proteins. The subfamily includes an uncharacterized
protein from Thermus thermophilus (TTHA0227) and its
homologs from bacteria. Although its biological role
remains unclear, TTHA0227 contains a minimal
metalloprotease (MMP)-like domain consisting of
3-stranded mixed 2-beta sheets and a HExxH (x could be
any amino acid) motif. It may belong to a superfamily of
bacterial zinc metallo-peptidases, which is
characterized by a conserved HExxHxxGxxD motif.
Length = 112
Score = 28.7 bits (65), Expect = 2.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 97 DCIGEEVEKMVAEIPE-------GGVLLLENVRFHKEEEKND 131
D E +E++ EIPE GG++LL ++H E D
Sbjct: 3 DEFEELLEEIADEIPEAFFRELNGGIILLPEAKYHPESPNGD 44
>gnl|CDD|197798 smart00580, PUG, domain in protein kinases, N-glycanases and other
nuclear proteins.
Length = 57
Score = 26.9 bits (60), Expect = 3.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 117 LLENVRFHKEEEKNDPEFAKKLASLAD 143
L N+ H EEK +P ++L +
Sbjct: 8 ALRNILHHPREEKGNPAIKERLGPVPG 34
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 316
Score = 29.0 bits (65), Expect = 4.3
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 336 TEAIAKKLAELSGKGV---TTIIGGGDSVAAVEKVGLADKM--------SHISTGGGASL 384
+EAIA+ L E++ GV T+IG G S A+ +G+ DK+ S IS G A++
Sbjct: 175 SEAIARNLREMARLGVPVICTVIGEGGSGGAL-AIGVGDKVNMLEYSTYSVISPEGCAAI 233
>gnl|CDD|240716 cd12270, RRM_MTHFSD, RNA recognition motif in vertebrate
methenyltetrahydrofolate synthetase domain-containing
proteins. This subfamily corresponds to
methenyltetrahydrofolate synthetase domain (MTHFSD), a
putative RNA-binding protein found in various vertebrate
species. It contains an N-terminal
5-formyltetrahydrofolate cyclo-ligase domain and a
C-terminal RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain).
The biological role of MTHFSD remains unclear. .
Length = 74
Score = 26.9 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 318 IIWNGPMGVFEF----DKFAAGTEAIAKKLAELSGKGVT 352
I W G G F DK AA ++ L +LS G T
Sbjct: 30 ITWQGARG-KAFLHFPDKDAADADSALASLQQLSIGGNT 67
>gnl|CDD|219732 pfam08161, NUC173, NUC173 domain. This is the central domain of of
novel family of hypothetical nucleolar proteins.
Length = 197
Score = 27.9 bits (63), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 115 VLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHA 158
VL + + F K E+++P K L +L DL N++F R
Sbjct: 20 VLNVLSALFDKLGERSNPLLLKVLKTLGDLRTNESF--PFRKEL 61
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 28.5 bits (63), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 110 IPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYV 146
+PE + L+ + + K DPEF K+LA+L YV
Sbjct: 287 VPEALITALDELERVYTQAKADPEFHKELATLNQRYV 323
>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the
activation of KDO which is an essential component of
the lipopolysaccharide. CMP-KDO Synthetase:
3-Deoxy-D-manno-octulosonate cytidylyltransferase
(CMP-KDO synthetase) catalyzes the conversion of CTP
and 3-deoxy-D-manno-octulosonate into
CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and
pyrophosphate. KDO is an essential component of the
lipopolysaccharide found in the outer surface of
gram-negative eubacteria. It is also a constituent of
the capsular polysaccharides of some gram-negative
eubacteria. Its presence in the cell wall
polysaccharides of green algae and plant were also
discovered. However, they have not been found in yeast
and animals. The absence of the enzyme in mammalian
cells makes it an attractive target molecule for drug
design.
Length = 239
Score = 28.2 bits (64), Expect = 7.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 13 ADLKGK----RVFVRVDLNVPLDDNLNI-TDDNRVRAAVPTIKYLMGHGAKVILSSH 64
AD+ GK V+ R D + + TDD R+ AV G KV+++S
Sbjct: 21 ADIAGKPMIQHVYERA-KKAKGLDEVVVATDDERIADAV------ESFGGKVVMTSP 70
>gnl|CDD|205225 pfam13044, DUF3904, Protein of unknown function (DUF3904). This
family of proteins is functionally uncharacterized. This
family of proteins is found in viruses. Proteins in this
family are typically between 437 and 448 amino acids in
length.
Length = 436
Score = 28.5 bits (63), Expect = 7.9
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 243 VEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPD 293
++ KLD+ + + +KG+ + +P+ V+++ K + + +VVP ++PD
Sbjct: 182 IKTGKLDIDSCCTQHGCTKGIRVEVPSPVLVSAK-CNEISFRVVPFHSVPD 231
>gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional.
Length = 470
Score = 28.2 bits (63), Expect = 8.2
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 159 STEGVAKFLKPS------VAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIES 212
+ E +F+K + V G+ L+ LV ++ P+K I G V I +
Sbjct: 33 TYEKTEEFVKKAKEGNTRVKGY---HTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLP 89
Query: 213 LLEKVDILLLGG 224
LLEK DI++ GG
Sbjct: 90 LLEKGDIIIDGG 101
>gnl|CDD|220638 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 28.0 bits (63), Expect = 9.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 203 VSTKIGVIESLLEK---VDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAK 259
+ KI + + L K V ++L+G HS+G+ + L++ L K +
Sbjct: 62 IEHKIDFLRAFLPKKTDVKLILIG------------HSIGAYIA----LEVLKRLSLKFR 105
Query: 260 SKGVSLLLPTDVVIAD 275
K LL PT IA
Sbjct: 106 IKKCVLLFPTIEDIAK 121
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
This model does not specify whether the cofactor is
NADP only (EC 1.1.1.44), NAD only, or both. The model
does not assign an EC number for that reason [Energy
metabolism, Pentose phosphate pathway].
Length = 467
Score = 28.1 bits (63), Expect = 9.4
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 159 STEGVAKFLKPSVAG--FLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEK 216
+ E +FL G + ++ V ++ P+K + G+ V I + LLEK
Sbjct: 31 TPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK 90
Query: 217 VDILLLGG 224
DI++ GG
Sbjct: 91 GDIIIDGG 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.372
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,641,481
Number of extensions: 2082603
Number of successful extensions: 1777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 51
Length of query: 401
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 302
Effective length of database: 6,546,556
Effective search space: 1977059912
Effective search space used: 1977059912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.9 bits)