RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040813
(401 letters)
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 720 bits (1862), Expect = 0.0
Identities = 204/402 (50%), Positives = 277/402 (68%), Gaps = 8/402 (1%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
M+ S+ K+ DL K+VF+R D NVP DD LNITDD R+R+A+PTI+Y + +G VI
Sbjct: 4 MSDIISI---KDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L+SHLGRPK ++ KYSL+P+ RL+ LL E+ MA D IGE+ + + G +LLLEN
Sbjct: 61 LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMQK 178
+RF K E KND AK+LAS+ +Y+NDAFG HRAH+S E + KF K AGFL+QK
Sbjct: 121 LRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180
Query: 179 ELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSV 238
E+D+ + +P +PF A+VGGSKVS K+ + +LL KVD L++GGGM FTF KA G+ +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDI 240
Query: 239 GSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGL 298
G+SL+EE+ L+ A ++ K K+ GV + LP DVV A + D K VPA IP+GWMGL
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGL 300
Query: 299 DVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGG 358
D+GP +++ F E + +TI WNGPMGVFE DKF+ G+ ++ ++E T+++GGG
Sbjct: 301 DIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISE---GHATSVVGGG 357
Query: 359 DSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
D+ V + G AD+M+ ISTGGGASLEL+EGK LPGV AL
Sbjct: 358 DTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRS 399
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 714 bits (1845), Expect = 0.0
Identities = 235/399 (58%), Positives = 293/399 (73%), Gaps = 7/399 (1%)
Query: 4 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63
K ++ ++ DLKGKRV +RVD NVP+ D + DD R+RAA+PTIKY + GAKVIL S
Sbjct: 2 KMTI---RDVDLKGKRVIMRVDFNVPVKDG-VVQDDTRIRAALPTIKYALEQGAKVILLS 57
Query: 64 HLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVR 122
HLGRPKG +P++SL P+ RLSELLG EVK +G+EV+K V E+ EG VLLLEN R
Sbjct: 58 HLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTR 117
Query: 123 FHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDY 182
FH E KNDPE AK ASLAD++VNDAFG+AHRAHAS G+A+F+ PSVAGFLM+KE+ +
Sbjct: 118 FHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKF 176
Query: 183 LVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSL 242
L NP+KP+ ++GG+KVS KIGVI +L+EK D +L+GG M+FTF KA G VGSS
Sbjct: 177 LSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSR 236
Query: 243 VEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVG 301
VEEDK+DLA L+EKAK KGV ++LP D VIA K KVV IP+GWMGLD+G
Sbjct: 237 VEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIG 296
Query: 302 PDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSV 361
P+ I+ F + L KT++WNGPMGVFE D FA GT+ +A +A L+ KG T++GGGDS
Sbjct: 297 PETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSA 356
Query: 362 AAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
AAV K GL DK SH+STGGGASLE LEGK LPG+ ++
Sbjct: 357 AAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRI 395
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 712 bits (1841), Expect = 0.0
Identities = 244/399 (61%), Positives = 303/399 (75%), Gaps = 8/399 (2%)
Query: 3 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILS 62
KK++ ++ D++GKRVF RVD NVP++ ITDD R+RAA+PTI+YL+ HGAKVIL+
Sbjct: 2 NKKTI---RDVDVRGKRVFCRVDFNVPMEQG-AITDDTRIRAALPTIRYLIEHGAKVILA 57
Query: 63 SHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENV 121
SHLGRPKG V + L + RL ELL V N+ +G+EV+ V + EG VLLLENV
Sbjct: 58 SHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENV 117
Query: 122 RFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELD 181
RF+ EEKNDPE AK A LADLYVNDAFG+AHRAHASTEG+A +L P+VAGFLM+KEL+
Sbjct: 118 RFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKELE 176
Query: 182 YLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241
L A+SNP +PF AI+GG+KV KIGVI++LLEKVD L++GGG+ +TF KA GH VG S
Sbjct: 177 VLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKS 236
Query: 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVG 301
L+EEDK++LA S MEKAK KGV +P DVV+AD+FA DAN+KVVP AIP W LD+G
Sbjct: 237 LLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIG 296
Query: 302 PDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSV 361
P + + + + +K ++WNGPMGVFE D FA GT+AIA+ LAE ++IGGGDS
Sbjct: 297 PKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEAL--DTYSVIGGGDSA 354
Query: 362 AAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct: 355 AAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 712 bits (1840), Expect = 0.0
Identities = 199/390 (51%), Positives = 264/390 (67%), Gaps = 4/390 (1%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
L + D KGKRV VRVD NVP+ D + D+ R+ ++PT+++L+ GA ++L SHLGRPK
Sbjct: 4 LLDLDPKGKRVLVRVDYNVPVQDG-KVQDETRILESLPTLRHLLAGGASLVLLSHLGRPK 62
Query: 70 GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEK 129
G PKYSL P+ L L EE + + G VLLLENVRF EEK
Sbjct: 63 GPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 122
Query: 130 NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSN 189
NDPE + + A L + +V DAFGSAHRAHAS GVA+ L P+ AGFLM+KE+ L + +
Sbjct: 123 NDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEVRALSRLLKD 181
Query: 190 PKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLD 249
P++P+A ++GG+KVS KIGVIESLL ++D LL+GG M FTF KA G VG SLVEED+LD
Sbjct: 182 PERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLD 241
Query: 250 LATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFS 309
LA L+ +A++ GV + LP DVV A++ A ++V PA AIP +MGLD+GP ++F+
Sbjct: 242 LAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFA 301
Query: 310 EALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL 369
AL+ +T+ WNGPMGVFE F GT A+ + +A L G T++GGGDSVAAV ++GL
Sbjct: 302 RALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALE--GAFTVVGGGDSVAAVNRLGL 359
Query: 370 ADKMSHISTGGGASLELLEGKTLPGVLALD 399
++ H+STGGGASLE LE TLPG+ L+
Sbjct: 360 KERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 693 bits (1790), Expect = 0.0
Identities = 196/419 (46%), Positives = 270/419 (64%), Gaps = 28/419 (6%)
Query: 4 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63
KKS+ E DLKGK+V +RVD NVP+ + IT+D R+R+A+PT+K ++ G +L S
Sbjct: 2 KKSI---NECDLKGKKVLIRVDFNVPVKNG-KITNDYRIRSALPTLKKVLTEGGSCVLMS 57
Query: 64 HLGRPKG-----------------VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM 106
HLGRPKG K +LKP+ RLSELL V A DC+ +
Sbjct: 58 HLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AADV 115
Query: 107 VAEIPEGGVLLLENVRFHKEE----EKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEG 162
V+++ G V+LLENVRF+KEE K+ AK LAS D+Y++DAFG+AHR A+ G
Sbjct: 116 VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTG 175
Query: 163 VAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLL 222
+ K L AG+LM+KE+ Y + NP +P AIVGG+KVS KI +++++L+++D LL+
Sbjct: 176 IPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLI 235
Query: 223 GGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADAN 282
GG M +TF KAQG+S+G S EE KL+ A SL++KA+ + V ++LP D V +F A +
Sbjct: 236 GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDS 295
Query: 283 SKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKK 342
+ IP+G M LD+GP I+ + + + K+ IWNGPMGVFE ++ GT AIAK
Sbjct: 296 PLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKA 355
Query: 343 LAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
+ + + G+ +IIGGGDS +A E G A +MSH+STGGGASLELLEGKTLPGV LDD
Sbjct: 356 MGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDD 414
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 690 bits (1782), Expect = 0.0
Identities = 200/419 (47%), Positives = 273/419 (65%), Gaps = 24/419 (5%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGA-KV 59
+ K S+S L D+K K+V VRVD NVP+++ I D NR+ A +PTI +L GA K+
Sbjct: 4 LGNKLSISDL--KDIKNKKVLVRVDFNVPIENG-IIKDTNRITATLPTINHLKKEGASKI 60
Query: 60 ILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118
IL SH GRP G KY+LKP+ L LLG EV NDC+G+EVE + E V+LL
Sbjct: 61 ILISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILL 120
Query: 119 ENVRFHKEEE---------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGV 163
EN+RFH EEE ++ +F L LAD+++NDAFG+AHRAH+S GV
Sbjct: 121 ENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGV 180
Query: 164 AKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLG 223
+K +GFLM+KEL+Y A+ NP++P AI+GG+KVS KI +I++LL+KVD +++G
Sbjct: 181 KLNVK--ASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIG 238
Query: 224 GGMIFTFYKA-QGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADAN 282
GGM +TF K +G+SL +E + +MEKAK+K V + LP D IAD F +AN
Sbjct: 239 GGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNAN 298
Query: 283 SKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAK 341
+K V IPD WMGLD GP +I+++ + + T+KT+IWNGP GVFE FA G+
Sbjct: 299 TKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLN 358
Query: 342 KLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
+ E++ KG TI+GGGD+ + VE+ +++SH+STGGGASLELLEGK LPGVLAL +
Sbjct: 359 LVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKELPGVLALSN 417
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 686 bits (1773), Expect = 0.0
Identities = 181/402 (45%), Positives = 268/402 (66%), Gaps = 16/402 (3%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
M+ LK+ DLK K+V VRVD NVP+ D +T R+ AA+PTI+Y++ G VI
Sbjct: 4 MSFLT----LKDVDLKDKKVLVRVDFNVPVKDG-KVTSKVRIEAAIPTIQYILDQGGAVI 58
Query: 61 LSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118
L SHLGRP ++SL+P+ LSE++ VK A D + ++ G +++
Sbjct: 59 LMSHLGRPTEGEYDSQFSLEPVAKALSEIINKPVKFAKDWLDG------VDVKAGEIVMC 112
Query: 119 ENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQK 178
ENVRF+ E+K+ + +KK+ASL D++V DAF +AHRA AST GVAK++ + AG L+
Sbjct: 113 ENVRFNSGEKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGVAKYIPVACAGILLTN 172
Query: 179 ELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSV 238
E+ L A+ +PKKP AAIVGGSKVSTK+ V+ +LL+KV+IL++GGG+ TF KA+G V
Sbjct: 173 EIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDV 232
Query: 239 GSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGL 298
G+SL E+D + AT ++ KAK+ GV++ +P DV +A +F+ +A + + + + M L
Sbjct: 233 GNSLYEQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMIL 292
Query: 299 DVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGG 358
D+GP++ K +E L + TI+WNGP+GVFEFD FA GT+A++ +A+ ++ GGG
Sbjct: 293 DIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLAIAQ---SHAFSVAGGG 349
Query: 359 DSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
D++AA+EK G+ D++S+IST GGA LE LEGK LP + L +
Sbjct: 350 DTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKE 391
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 685 bits (1771), Expect = 0.0
Identities = 209/418 (50%), Positives = 283/418 (67%), Gaps = 24/418 (5%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-V 59
+++K SV ++ DLK KRVF+RVD NVPLD IT + R+ AA+PTIKY++ H + V
Sbjct: 2 LSSKLSV---QDLDLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYV 57
Query: 60 ILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118
+L+SHLG+P G KYSL P+ L LLG +V NDC+G EVE V G V+LL
Sbjct: 58 VLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILL 117
Query: 119 ENVRFHKEEE--------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVA 164
EN+R+H EEE ++ +F +L+SLAD+Y+NDAFG+AHRAH+S G
Sbjct: 118 ENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD 177
Query: 165 KFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGG 224
L AGFL++KEL Y A+ NP +PF AI+GG+KV+ KI +I++LL+KVD +++GG
Sbjct: 178 --LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGG 235
Query: 225 GMIFTFYKA-QGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANS 283
GM FTF K + +G S+ ++ ++ LMEKAK+KGV ++LP D +IAD F+ADAN+
Sbjct: 236 GMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANT 295
Query: 284 KVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKK 342
K V IP GW GLD GP++ K F+ + KTI+WNGP GVFEF+KFAAGT+A+ +
Sbjct: 296 KTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDE 355
Query: 343 LAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
+ + S G T IIGGGD+ +K G+ DK+SH+STGGGASLELLEGK LPGV L +
Sbjct: 356 VVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 413
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 676 bits (1747), Expect = 0.0
Identities = 198/420 (47%), Positives = 274/420 (65%), Gaps = 26/420 (6%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-V 59
++ K ++ + D+KGKRV +RVD NVP+ +N IT++ R++AAVP+IK+ + +GAK V
Sbjct: 2 LSNKLTL---DKLDVKGKRVVMRVDFNVPMKNN-QITNNQRIKAAVPSIKFCLDNGAKSV 57
Query: 60 ILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLL 117
+L SHLGRP G + KYSL+P+ L LLG +V DC+G EVEK A G V+L
Sbjct: 58 VLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVIL 117
Query: 118 LENVRFHKEEEKND---------------PEFAKKLASLADLYVNDAFGSAHRAHASTEG 162
LEN+RFH EEE F L+ L D+YVNDAFG+AHRAH+S G
Sbjct: 118 LENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVG 177
Query: 163 VAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLL 222
V L GFLM+KEL+Y A+ +P++PF AI+GG+KV+ KI +I ++L+KV+ +++
Sbjct: 178 VN--LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMII 235
Query: 223 GGGMIFTFYKA-QGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADA 281
GGGM FTF K +G+SL +E+ + LM KA+ GV + LP D V ADKF +A
Sbjct: 236 GGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENA 295
Query: 282 NSK-VVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIA 340
+ A+ IP GWMGLD GP++ K ++EA+ K I+WNGP+GVFE++ FA GT+A+
Sbjct: 296 KTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALM 355
Query: 341 KKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
++ + + +G TIIGGGD+ K DK+SH+STGGGASLELLEGK LPGV AL +
Sbjct: 356 DEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 415
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 674 bits (1742), Expect = 0.0
Identities = 175/402 (43%), Positives = 252/402 (62%), Gaps = 21/402 (5%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
M+ K + + DL GKRVF+R DLNVP+ D +T D R+RA++PTI+ + GAKV+
Sbjct: 1 MSVIK----MTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVM 55
Query: 61 LSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118
++SHLGRP ++SL P+V L + L V++ D + ++ EG +++L
Sbjct: 56 VTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVL 109
Query: 119 ENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQK 178
ENVRF+K E+K+D +KK A+L D++V DAFG+AHRA AST G+ KF + AG L+
Sbjct: 110 ENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAA 169
Query: 179 ELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSV 238
ELD L A+ P +P AIVGGSKVSTK+ V++SL + D L++GGG+ TF AQGH V
Sbjct: 170 ELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDV 229
Query: 239 GSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGL 298
G SL E D +D A L+ + +P+DV +A +F+ A + + + L
Sbjct: 230 GKSLYEADLVDEAKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQIL 284
Query: 299 DVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGG 358
D+G + + +E L KTI+WNGP+GVFEF F GTE +A +A+ +I GGG
Sbjct: 285 DIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGG 341
Query: 359 DSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
D++AA++ G+ADK+S+ISTGGGA LE +EGK LP V L++
Sbjct: 342 DTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 660 bits (1705), Expect = 0.0
Identities = 136/405 (33%), Positives = 213/405 (52%), Gaps = 20/405 (4%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
L++ + K VF+RVDLN P+ D I D R +A +PTI+YL+ GAKV++ +H G+P
Sbjct: 4 LEDFNFHNKTVFLRVDLNSPMKDG-KIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPY 62
Query: 70 GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEK 129
+ + LSELL V+ D G + + E+ G V +LEN+RF EE K
Sbjct: 63 S-EDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVK 121
Query: 130 NDP-------EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDY 182
N P KKL+ + D VNDAF +AHR+ S G A+ P + GFLM+KE++
Sbjct: 122 NKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIK-PMIMGFLMEKEIEA 180
Query: 183 LVGAVSNPKKPFAAIVGGSKVSTKIGVIESLL--EKVDILLLGGGMIFTFYKAQGHSVGS 240
L+ A + P ++GG+KV + V+E++L E+ D++L GG + F A+G +G
Sbjct: 181 LMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGR 240
Query: 241 SLVEEDKLDLATSLMEKAKSK----GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWM 296
VE K ++ A+ + P D + K + + +
Sbjct: 241 KNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQ 300
Query: 297 GLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIG 356
+D+G + + E L + I+ NGPMGVFE ++FA GT + K +A+ +++G
Sbjct: 301 IMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADSPA---FSVLG 357
Query: 357 GGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
GG S+A+++K G+ ++HISTGGGA L G+ LP + AL +
Sbjct: 358 GGHSIASIQKYGITG-ITHISTGGGAMLSFFAGEELPVLRALQIS 401
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 575 bits (1485), Expect = 0.0
Identities = 172/343 (50%), Positives = 231/343 (67%), Gaps = 18/343 (5%)
Query: 74 KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE----- 128
KYSL P+ L LLG +V NDC+G EVE V G V+LLEN+R+H EEE
Sbjct: 3 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKV 62
Query: 129 ---------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKE 179
++ +F +L+SLAD+Y+NDAFG+AHRAH+S G L AGFL++KE
Sbjct: 63 DGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGF--DLPQRAAGFLLEKE 120
Query: 180 LDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKA-QGHSV 238
L Y A+ NP +PF AI+GG+KV+ KI +I++LL+KVD +++GGGM FTF K + +
Sbjct: 121 LKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEI 180
Query: 239 GSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMG 297
G S+ ++ ++ LMEKAK+KGV ++LP D +IAD F+ADAN+K V IP GW G
Sbjct: 181 GDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQG 240
Query: 298 LDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGG 357
LD GP++ K F+ + KTI+WNGP GVFEF+KFAAGT+A+ ++ + S G T IIGG
Sbjct: 241 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGG 300
Query: 358 GDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
GD+ +K G+ DK+SH+STGGGASLELLEGK LPGV L +
Sbjct: 301 GDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 343
Score = 103 bits (259), Expect = 1e-24
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-V 59
+++K SV ++ DLK KRVF+RVD NVPLD IT + R+ AA+PTIKY++ H + V
Sbjct: 347 LSSKLSV---QDLDLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYV 402
Query: 60 ILSSHLGRPKG 70
+L+SHLGRP G
Sbjct: 403 VLASHLGRPNG 413
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 8e-05
Identities = 51/297 (17%), Positives = 82/297 (27%), Gaps = 104/297 (35%)
Query: 132 PEFAKKLASLADLYVNDAF--GS-AHRAHASTEGVAKFLK---------PS----VAGFL 175
F + F G + A+ +T L+ PS ++ L
Sbjct: 290 ESFFV----SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-L 344
Query: 176 MQKELDYLVGAVSNPKKP-----FAAIVGGSK---VSTKIGVIESL------LEKVDILL 221
Q+++ V N P ++V G+K VS G +SL L K
Sbjct: 345 TQEQVQDYVNKT-NSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNLTLRKA---- 396
Query: 222 LGGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDV--------VI 273
KA LD + + K K + LP
Sbjct: 397 ----------KA-----------PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 274 ADKFAADANSKVVPATA----IP--DGWMGLDV---GPDAIKSFSEALDTTKTIIWN--- 321
+D D V A IP D + G D+ + + + + W
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI-IRLPVKWETTT 494
Query: 322 ----------GPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVG 368
GP G +G + + + G GV I+ G + + G
Sbjct: 495 QFKATHILDFGPGGA-------SGLGVLTHRNKD--GTGVRVIVAGTLDINPDDDYG 542
Score = 42.3 bits (99), Expect = 3e-04
Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 75/201 (37%)
Query: 234 QG-HSVGSSLVEEDKLDLATSLMEKAKSK-----GVSLLLPTDVV------IADKFAADA 281
QG G + A + +A + G S+L D+V + F
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSIL---DIVINNPVNLTIHFGG-E 1679
Query: 282 NSKVVPATAIPDGWMGL--DVGPDAI----KSFSEALDTTKTIIWNGPMGVFEFDKFAAG 335
K I + + + + D K F E + + + + G+
Sbjct: 1680 KGK-----RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA------ 1728
Query: 336 TE----AIAKKLAELSGKGVTTIIGGGDSVAAVEKV---GLADKMS----HISTGGGASL 384
T+ A+ AA E + GL + H SL
Sbjct: 1729 TQFTQPAL-----------TLM------EKAAFEDLKSKGLIPADATFAGH-------SL 1764
Query: 385 -E---LLEGKTLPGVLALDDA 401
E L +L V++++
Sbjct: 1765 GEYAALA---SLADVMSIESL 1782
Score = 41.6 bits (97), Expect = 5e-04
Identities = 49/304 (16%), Positives = 88/304 (28%), Gaps = 98/304 (32%)
Query: 2 AAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVIL 61
AA+ V AD + + L+I +N P +
Sbjct: 1641 AAQD---VWNRADN-----HFKDTYGFSI---LDIVINN------PVNLTI--------- 1674
Query: 62 SSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENV 121
H G KG K + S ++ + + EK+ EI E +
Sbjct: 1675 --HFGGEKG-------KRIRENYSAMIFETIVDGK----LKTEKIFKEINE----HSTSY 1717
Query: 122 RFHKEEEK-NDPEF---AKKLASLADLYV---------NDAF-----G--SAHRAHA--- 158
F E+ + +F A L A + F G +A + A
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 159 STEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIG--VIESLLEK 216
S E + + + G MQ + SN + +V+ ++ ++E+
Sbjct: 1778 SIESLVEVVF--YRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQEALQYVVER 1832
Query: 217 VDILLLGGGMIFTFYKAQGHSV--------GSSLV---EEDKLDLATSLMEKAKSKGVSL 265
V K G V V + LD T+++ K + + +
Sbjct: 1833 VG-------------KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 266 L-LP 268
+ L
Sbjct: 1880 IELQ 1883
Score = 38.5 bits (89), Expect = 0.004
Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 65/180 (36%)
Query: 75 YSLKPLVPRLSELLG-VEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE 133
YS +PL LS G +E + +P F + + +
Sbjct: 4 YSTRPLT--LSH--GSLEHVL--------------LVPT-------ASFFIASQLQE--Q 36
Query: 134 FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKP 193
F K L + F + E V KFL G++
Sbjct: 37 FNKILPE-----PTEGFAADDEPTTPAELVGKFL-----GYV------------------ 68
Query: 194 FAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLATS 253
+++V SKV V+ L + + L G I H++ + L++E+ L +
Sbjct: 69 -SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--------HALAAKLLQENDTTLVKT 119
Score = 36.6 bits (84), Expect = 0.019
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 21/105 (20%)
Query: 10 LKEA------DLKGKRV-FVRVDLNVPLDD-----NLNITDDNRVRAAVPTIKYLMGH-- 55
L A DL V F D+ +P+ D +L + + V I L
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 56 GAKVILSSHL---GRPKGVTPKYSLKPLVPRLSELLGVEVKMAND 97
++H+ G P G + L L R + GV V +A
Sbjct: 492 TTTQFKATHILDFG-PGGAS---GLGVLTHRNKDGTGVRVIVAGT 532
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 49/332 (14%), Positives = 94/332 (28%), Gaps = 122/332 (36%)
Query: 1 MA-AKKSV---SVLKEADLKGKRVFVRVDLNVPLDDN---LNITDDNRVRAAVPTIKYLM 53
+ + K+ V ++ K +D LN+ + N + ++ L+
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCK-----------MDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 54 GHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPE 112
I + R K + + L LL + K +C+
Sbjct: 207 YQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCL------------- 247
Query: 113 GGVLLLENVRFHKEEEKNDPE----FA---KKLASLADLYVNDAFGSAHRAHASTEGVAK 165
L+L NV+ + + F K L + V D +A H S + +
Sbjct: 248 ---LVLLNVQ--------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 166 FLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESL-LEKVDILLLGG 224
L P K L + + L E +
Sbjct: 297 TLTPDEV-----KSL-------------LLKYLDCR--------PQDLPREVLTTNPRRL 330
Query: 225 GMI----------FTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDV--- 271
+I + +K H V DKL T+++E + +++L P +
Sbjct: 331 SIIAESIRDGLATWDNWK---H------VNCDKL---TTIIESS----LNVLEPAEYRKM 374
Query: 272 ----VIADKFAADANSKVVPATAIPDGWMGLD 299
+ F A+ +P + W +
Sbjct: 375 FDRLSV---FPPSAH---IPTILLSLIWFDVI 400
Score = 35.6 bits (81), Expect = 0.029
Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 117/264 (44%)
Query: 4 KKSVSVLKEADLKGKR-----VFVRVDLNVPL------------DDNLNITDDNRVRAAV 46
+ S++VL+ A+ + K VF ++P D + + + + V
Sbjct: 360 ESSLNVLEPAEYR-KMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 47 -----PTIKYLMG---------------HGAKVILS-----------------------S 63
+ + H + I+ S
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 64 HLGRPKGVTPKYSLKPLVPRLSELLG-----------VEVKMANDCIGEEVEKMVAEIPE 112
H+G + LK + E + +E K+ +D A
Sbjct: 476 HIG--------HHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHDST--------AWNAS 517
Query: 113 GGVL-LLENVRFHKEE-EKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPS 170
G +L L+ ++F+K NDP++ + + ++ D FL
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILD----------------------FLPKI 555
Query: 171 VAGFLMQKELDYLVGAVSNPKKPF 194
+ K D L A+ +
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAI 579
Score = 34.8 bits (79), Expect = 0.056
Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 77/237 (32%)
Query: 123 FHKEEEKND-PEFAKKLASLADLYVNDAFGSAHRAHAS-----------TEGVAKFLKPS 170
F + D + K + S + ++ S + E V KF+
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 171 VAGFLMQKELDYLVGAVSN-PKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFT 229
+++ +L+ + ++P + +E+ D L +F
Sbjct: 84 --EEVLRINYKFLMSPIKTEQRQP-------------SMMTRMYIEQRDRLY-NDNQVFA 127
Query: 230 FYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSL---------LLPTDVVIADKFAAD 280
Y +V + L L +L+E +K V + + DV ++ K
Sbjct: 128 KY-----NVSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 281 ANSKVVPATAIPDGWMGLDVG----PDAI------------KSFSEALDTTKTIIWN 321
+ K+ W L++ P+ + +++ D + I
Sbjct: 180 MDFKIF--------W--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.10
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 128 EKNDPEFAKKLASLADLYVNDAFGSAHRAHASTE 161
EK KKL + LY +D+ A A+ E
Sbjct: 18 EKQA---LKKLQASLKLYADDS-APALAIKATME 47
Score = 29.5 bits (65), Expect = 1.1
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 15/38 (39%)
Query: 256 EKAKSKGV--SLLLPTDVVIADKFAADANSKVVPATAI 291
EK K + SL L +A D+ PA AI
Sbjct: 18 EKQALKKLQASLKL---------YADDS----APALAI 42
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 78 KPLVPRLSELLGVEVKMANDC 98
KPL LS L +V++ ND
Sbjct: 110 KPLRADLSARLDRDVRLDNDA 130
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics,
center for structural genomics of infec diseases, csgid,
transferase; 1.95A {Vibrio vulnificus}
Length = 327
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 78 KPLVPRLSELLGVEVKMANDC 98
KPL L +G VK+ ND
Sbjct: 110 KPLRADLEAKIGRSVKIENDA 130
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A
{Mycobacterium smegmatis}
Length = 178
Score = 29.3 bits (66), Expect = 1.7
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 337 EAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHIST-----GGG-------ASL 384
E + +A GK V ++GGGD A L D++ +S G G +
Sbjct: 98 ELHPELVAAAGGKDVW-VVGGGDVAAQFVAADLIDEI-IVSYAPCTLGVGSRVLPMRSEW 155
Query: 385 ELLEGKTLPGVLAL 398
L + +
Sbjct: 156 VLDDCARNGDFVCA 169
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 29.4 bits (65), Expect = 2.3
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 11/62 (17%)
Query: 9 VLKEADLKGKRVFV-----RVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63
A G ++ D N + I + +V A L LS
Sbjct: 227 SSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDA------LTEGAMDFSLSG 280
Query: 64 HL 65
H+
Sbjct: 281 HI 282
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli}
SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A*
1h7g_A* 1h7h_A* 1h7t_A*
Length = 245
Score = 29.0 bits (66), Expect = 2.4
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 13 ADLKGK----RVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63
D+ GK V+ R + + TDD RV AV G K I++
Sbjct: 22 LDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAV------QAFGGKAIMTR 70
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 29.1 bits (66), Expect = 2.5
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 78 KPLVPRLSELLGVEVKMAND 97
L +L L V+ + D
Sbjct: 97 YDLADKLENTLNCPVEFSRD 116
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 28.5 bits (63), Expect = 3.8
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 338 AIAKKLAELSGKGVTTIIGGGDSVAA--VEKVGLADKMSHISTG 379
+KK + GV I G S +A V+ + A + HI T
Sbjct: 59 EASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTR 102
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural
genomics, MPN423, hypothetical protien, all alpha
structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP:
a.291.1.1
Length = 135
Score = 27.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 166 FLKPSVA-GFLMQ----KELDYLVGAVSNPK 191
FLKP ++ F + K+LD L V NPK
Sbjct: 59 FLKPMLSDAFFISSEVVKQLDLLAVLVDNPK 89
>2lhk_A L0052; chaperone, type III secretion system; NMR {Escherichia coli}
Length = 107
Score = 27.1 bits (59), Expect = 4.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 101 EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVN 147
E ++K++AE ++ E+V E+ K DP+ A+KL L + Y
Sbjct: 22 EAIKKIIAEFD----VVKESVNELSEKAKTDPQAAEKLNKLIEGYTY 64
>3hxl_A Uncharacterized protein DSY3957; alpha-beta three-domained
protein., structural genomics, PSI protein structure
initiative; 1.90A {Desulfitobacterium hafniense}
Length = 446
Score = 28.5 bits (63), Expect = 4.7
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 247 KLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIK 306
+ + ++K ++ L D VI A + P G +
Sbjct: 134 STLVDGAELDKQTVSDIAGLAANDWVIFSGTGALTETAGAPLI-------NGSDGAVTNQ 186
Query: 307 SFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGG 357
++ + L + +N D A A AK+L + GK + ++
Sbjct: 187 AYIDYLAAVEIFDFNTIALPSTDDALKATFTAFAKRLRDDEGKKIQVVLEN 237
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 27.9 bits (62), Expect = 6.4
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 25/98 (25%)
Query: 14 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP 73
L+GKRV + R R + + L G +V+ G
Sbjct: 345 RLEGKRVML-------------YIGGLRPRHVIGAYEDL---GMEVV---------GTGY 379
Query: 74 KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIP 111
+++ R + +G + +D G E E+ V I
Sbjct: 380 EFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIK 417
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 26.4 bits (59), Expect = 6.7
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 326 VFEFDKFAAGTEAIAKKLAELSGKGVTTI---------IGGGDSVAAVEKVGLADKM 373
V E D+ + K L L+G+ T+ IGG + + G + M
Sbjct: 48 VVELDQLGPQGPQLQKVLERLTGQ--HTVPNVFVCGKHIGGCTDTVKLNRKGDLELM 102
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer,
structural protein/chaperone complex; 2.80A {Escherichia
coli} SCOP: a.231.1.2
Length = 95
Score = 26.4 bits (57), Expect = 7.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 101 EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVN 147
E ++K++AE ++ E+V E+ K DP+ A+KL L + Y
Sbjct: 22 EAIKKIIAEFD----VVKESVNELSEKAKTDPQAAEKLNKLIEGYTY 64
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 27.7 bits (62), Expect = 7.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 337 EAIAKKLAELSGKGV---TTIIGGGDSVAAVEKVGLADKM 373
E+IA L E++ V +IG G S A+ +G+A+K+
Sbjct: 185 ESIATNLIEMASLKVPVIAIVIGEGGSGGAL-GIGIANKV 223
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 27.7 bits (62), Expect = 8.0
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 337 EAIAKKLAELSGKGV---TTIIGGGDSVAAVEKVGLADKM 373
EAIA+ L E+S GV T+IG G S A+ +G+ DK+
Sbjct: 199 EAIARNLREMSRLGVPVVCTVIGEGGSGGAL-AIGVGDKV 237
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo
sapiens} SCOP: c.55.3.5
Length = 238
Score = 27.2 bits (60), Expect = 8.5
Identities = 11/74 (14%), Positives = 17/74 (22%), Gaps = 9/74 (12%)
Query: 124 HKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYL 183
H + L SL Y +AH A + L
Sbjct: 160 HSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIF---------LHRAAEL 210
Query: 184 VGAVSNPKKPFAAI 197
+ + +A I
Sbjct: 211 LAWADEQARGWAHI 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.372
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,158,192
Number of extensions: 402296
Number of successful extensions: 1161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 67
Length of query: 401
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 305
Effective length of database: 4,021,377
Effective search space: 1226519985
Effective search space used: 1226519985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (25.9 bits)