RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 040813
(401 letters)
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 429 bits (1103), Expect = e-150
Identities = 244/399 (61%), Positives = 303/399 (75%), Gaps = 8/399 (2%)
Query: 3 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILS 62
KK+ +++ D++GKRVF RVD NVP++ ITDD R+RAA+PTI+YL+ HGAKVIL+
Sbjct: 2 NKKT---IRDVDVRGKRVFCRVDFNVPMEQG-AITDDTRIRAALPTIRYLIEHGAKVILA 57
Query: 63 SHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENV 121
SHLGRPKG V + L + RL ELL V N+ +G+EV+ V + EG VLLLENV
Sbjct: 58 SHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENV 117
Query: 122 RFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELD 181
RF+ EEKNDPE AK A LADLYVNDAFG+AHRAHASTEG+A +L P+VAGFLM+KEL+
Sbjct: 118 RFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKELE 176
Query: 182 YLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241
L A+SNP +PF AI+GG+KV KIGVI++LLEKVD L++GGG+ +TF KA GH VG S
Sbjct: 177 VLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKS 236
Query: 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVG 301
L+EEDK++LA S MEKAK KGV +P DVV+AD+FA DAN+KVVP AIP W LD+G
Sbjct: 237 LLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIG 296
Query: 302 PDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSV 361
P + + + + +K ++WNGPMGVFE D FA GT+AIA+ LAE ++IGGGDS
Sbjct: 297 PKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALDT--YSVIGGGDSA 354
Query: 362 AAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct: 355 AAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 408 bits (1049), Expect = e-142
Identities = 208/418 (49%), Positives = 282/418 (67%), Gaps = 24/418 (5%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-V 59
+++K S +++ DLK KRVF+RVD NVPLD IT + R+ AA+PTIKY++ H + V
Sbjct: 2 LSSKLS---VQDLDLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYV 57
Query: 60 ILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118
+L+SHLG+P G KYSL P+ L LLG +V NDC+G EVE V G V+LL
Sbjct: 58 VLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILL 117
Query: 119 ENVRFHKEEE--------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVA 164
EN+R+H EEE ++ +F +L+SLAD+Y+NDAFG+AHRAH+S G
Sbjct: 118 ENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVG-- 175
Query: 165 KFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGG 224
L AGFL++KEL Y A+ NP +PF AI+GG+KV+ KI +I++LL+KVD +++GG
Sbjct: 176 FDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGG 235
Query: 225 GMIFTFYKAQ-GHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANS 283
GM FTF K +G S+ ++ ++ LMEKAK+KGV ++LP D +IAD F+ADAN+
Sbjct: 236 GMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANT 295
Query: 284 KVVPA-TAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKK 342
K V IP GW GLD GP++ K F+ + KTI+WNGP GVFEF+KFAAGT+A+ +
Sbjct: 296 KTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDE 355
Query: 343 LAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
+ + S G T IIGGGD+ +K G+ DK+SH+STGGGASLELLEGK LPGV L +
Sbjct: 356 VVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 413
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 402 bits (1035), Expect = e-140
Identities = 234/393 (59%), Positives = 291/393 (74%), Gaps = 4/393 (1%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
+++ DLKGKRV +RVD NVP+ D + DD R+RAA+PTIKY + GAKVIL SHLGRPK
Sbjct: 5 IRDVDLKGKRVIMRVDFNVPVKDG-VVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPK 63
Query: 70 G-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE 128
G +P++SL P+ RLSELLG EVK +G+EV+K V E+ EG VLLLEN RFH E
Sbjct: 64 GEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGET 123
Query: 129 KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVS 188
KNDPE AK ASLAD++VNDAFG+AHRAHAS G+A+F+ PSVAGFLM+KE+ +L
Sbjct: 124 KNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKFLSKVTY 182
Query: 189 NPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKL 248
NP+KP+ ++GG+KVS KIGVI +L+EK D +L+GG M+FTF KA G VGSS VEEDK+
Sbjct: 183 NPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKI 242
Query: 249 DLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKS 307
DLA L+EKAK KGV ++LP D VIA K KVV IP+GWMGLD+GP+ I+
Sbjct: 243 DLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIEL 302
Query: 308 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKV 367
F + L KT++WNGPMGVFE D FA GT+ +A +A L+ KG T++GGGDS AAV K
Sbjct: 303 FKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKF 362
Query: 368 GLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
GL DK SH+STGGGASLE LEGK LPG+ ++
Sbjct: 363 GLEDKFSHVSTGGGASLEFLEGKELPGIASMRI 395
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 399 bits (1027), Expect = e-138
Identities = 201/419 (47%), Positives = 273/419 (65%), Gaps = 24/419 (5%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGA-KV 59
+ K S+S LK D+K K+V VRVD NVP+++ I D NR+ A +PTI +L GA K+
Sbjct: 4 LGNKLSISDLK--DIKNKKVLVRVDFNVPIENG-IIKDTNRITATLPTINHLKKEGASKI 60
Query: 60 ILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLL 118
IL SH GRP G KY+LKP+ L LLG EV NDC+G+EVE + E V+LL
Sbjct: 61 ILISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILL 120
Query: 119 ENVRFHKEEE---------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGV 163
EN+RFH EEE ++ +F L LAD+++NDAFG+AHRAH+S GV
Sbjct: 121 ENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGV 180
Query: 164 AKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLG 223
+K S FLM+KEL+Y A+ NP++P AI+GG+KVS KI +I++LL+KVD +++G
Sbjct: 181 KLNVKASG--FLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIG 238
Query: 224 GGMIFTFYKA-QGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADAN 282
GGM +TF K +G+SL +E + +MEKAK+K V + LP D IAD F +AN
Sbjct: 239 GGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNAN 298
Query: 283 SKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAK 341
+K V IPD WMGLD GP +I+++ + + T+KT+IWNGP GVFE FA G+
Sbjct: 299 TKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLN 358
Query: 342 KLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
+ E++ KG TI+GGGD+ + VE+ +++SH+STGGGASLELLEGK LPGVLAL +
Sbjct: 359 LVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKELPGVLALSN 417
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 398 bits (1024), Expect = e-138
Identities = 192/411 (46%), Positives = 259/411 (63%), Gaps = 23/411 (5%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRP 68
L + ++KGKRV +RVD NVP+ IT++ R++AAVP+IK+ + GAK V+L SHLGRP
Sbjct: 5 LDKLNVKGKRVVMRVDFNVPMAAA-QITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRP 63
Query: 69 KG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKE 126
G + KYSL+P+ L LG V DC+G VEK A+ G V+LLEN+RFH E
Sbjct: 64 DGSPMPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVE 123
Query: 127 EEK---------------NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSV 171
EE F L++L D+YVNDAFG+AHRAH+S GV L
Sbjct: 124 EEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGVN--LPKKA 181
Query: 172 AGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFY 231
FLM+KEL+Y A +P++PF AI+GG+KV+ KI +I ++L+KV+ +++GGGM FTF
Sbjct: 182 GAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFL 241
Query: 232 K-AQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKV-VPAT 289
K +G+SL +E + +LM KA + GV + LP D V ADKF A A+
Sbjct: 242 KVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVAS 301
Query: 290 AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK 349
IP GWMGLD GP + +SEA+ K I+WNGP+GVFE++ FA GT+A+ ++ + + +
Sbjct: 302 GIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSR 361
Query: 350 GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
G TIIGGGD+ K D +SH+STGGGASLELLEGK LPGV AL +
Sbjct: 362 GCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLEGKVLPGVDALSN 412
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 375 bits (963), Expect = e-129
Identities = 198/390 (50%), Positives = 262/390 (67%), Gaps = 4/390 (1%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
L + D KGKRV VRVD NVP+ D + D+ R+ ++PT+++L+ GA ++L SHLGRPK
Sbjct: 4 LLDLDPKGKRVLVRVDYNVPVQDG-KVQDETRILESLPTLRHLLAGGASLVLLSHLGRPK 62
Query: 70 GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEK 129
G PKYSL P+ L L EE + + G VLLLENVRF EEK
Sbjct: 63 GPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 122
Query: 130 NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSN 189
NDPE + + A L + +V DAFGSAHRAHAS GVA+ L AGFLM+KE+ L + +
Sbjct: 123 NDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPA-YAGFLMEKEVRALSRLLKD 181
Query: 190 PKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLD 249
P++P+A ++GG+KVS KIGVIESLL ++D LL+GG M FTF KA G VG SLVEED+LD
Sbjct: 182 PERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLD 241
Query: 250 LATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFS 309
LA L+ +A++ GV + LP DVV A++ A ++V PA AIP +MGLD+GP ++F+
Sbjct: 242 LAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFA 301
Query: 310 EALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL 369
AL+ +T+ WNGPMGVFE F GT A+ + +A L G T++GGGDSVAAV ++GL
Sbjct: 302 RALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALEGA--FTVVGGGDSVAAVNRLGL 359
Query: 370 ADKMSHISTGGGASLELLEGKTLPGVLALD 399
++ H+STGGGASLE LE TLPG+ L+
Sbjct: 360 KERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 356 bits (913), Expect = e-121
Identities = 195/419 (46%), Positives = 268/419 (63%), Gaps = 28/419 (6%)
Query: 4 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSS 63
KKS + E DLKGK+V +RVD NVP+ + IT+D R+R+A+PT+K ++ G +L S
Sbjct: 2 KKS---INECDLKGKKVLIRVDFNVPVKNG-KITNDYRIRSALPTLKKVLTEGGSCVLMS 57
Query: 64 HLGRPKG-----------------VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKM 106
HLGRPKG K +LKP+ RLSELL V A DC+ +
Sbjct: 58 HLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCL--NAADV 115
Query: 107 VAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYVNDAFGSAHRAHASTEG 162
V+++ G V+LLENVRF+KEE AK LAS D+Y++DAFG+AHR A+ G
Sbjct: 116 VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTG 175
Query: 163 VAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLL 222
+ K L AG+LM+KE+ Y + NP +P AIVGG+KVS KI +++++L+++D LL+
Sbjct: 176 IPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLI 235
Query: 223 GGGMIFTFYKAQGHSVGSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADAN 282
GG M +TF KAQG+S+G S EE KL+ A SL++KA+ + V ++LP D V +F A +
Sbjct: 236 GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDS 295
Query: 283 SKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKK 342
+ IP+G M LD+GP I+ + + + K+ IWNGPMGVFE ++ GT AIAK
Sbjct: 296 PLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKA 355
Query: 343 LAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
+ + + G+ +IIGGGDS +A E G A +MSH+STGGGASLELLEGKTLPGV LDD
Sbjct: 356 MGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDD 414
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 26.6 bits (58), Expect = 1.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 101 EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVN 147
E ++K++AE ++ E+V E+ K DP+ A+KL L + Y
Sbjct: 21 EAIKKIIAEFD----VVKESVNELSEKAKTDPQAAEKLNKLIEGYTY 63
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga
(Porphyridium purpureum) [TaxId: 35688]}
Length = 242
Score = 28.2 bits (62), Expect = 1.8
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 104 EKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLAS 140
+ +P + N + +E K DPEF +LA+
Sbjct: 19 QPAGQAMPGKSNIFANNEAWRQEMLKQDPEFFNRLAN 55
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 26.7 bits (59), Expect = 2.2
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 299 DVGPDAIKSFSEALDTTKTII----WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTI 354
+ + + + DT ++ + N M FE + G + I +KL L + V
Sbjct: 4 TLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQ-LQGAKDIVEKLVSLPFQKVQHR 62
Query: 355 I 355
I
Sbjct: 63 I 63
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 27.8 bits (60), Expect = 3.0
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 11/121 (9%)
Query: 10 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK 69
+ P D LN + + S G P
Sbjct: 336 FSSEFTNEIADRGLIASWCPQDKVLN---HPSIGGFLTH-----CGWNSTTESICAGVPM 387
Query: 70 GVTPKYSLKPLV-PRLSELLGVEVKMANDCIGEEVEKMVAEI--PEGGVLLLENVRFHKE 126
P ++ +P + + +++ + EE+ K++ E+ + G + + K+
Sbjct: 388 LCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKK 447
Query: 127 E 127
+
Sbjct: 448 K 448
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 26.3 bits (58), Expect = 7.5
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 308 FSEALD---TTKTIIWNGPMGVFEFDKFAAGTEAIAKKL 343
F L T T IWN +FD + E I++K+
Sbjct: 22 FDRTLARGPQTTTWIWNLHALAHDFDTHTSDLEDISRKI 60
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 25.1 bits (55), Expect = 7.9
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 101 EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE 133
E VE++ E+PE L+ V E K +P
Sbjct: 7 ELVERLWEEVPEDFKRGLQGVHVF-PEAKPEPG 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.372
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,415,357
Number of extensions: 66852
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 19
Length of query: 401
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,213,086
Effective search space: 380909004
Effective search space used: 380909004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.6 bits)